Mercurial > repos > richard-burhans > ncbi_egapx

changeset 34:192174c3b91b draft

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planemo upload for repository https://github.com/richard-burhans/galaxytools/tree/main/tools/ncbi_egapx commit 8fad6ad99b9f24e553ce58a4fd8a77dfb92fb5d7
author richard-burhans
date Tue, 01 Apr 2025 14:56:26 +0000
parents 96000184dd1e
children ff65a73f5379
files macros.xml ncbi_egapx.xml
diffstat 2 files changed, 2 insertions(+), 2 deletions(-) [+]
line wrap: on
line diff
--- a/macros.xml	Tue Apr 01 14:26:36 2025 +0000
+++ b/macros.xml	Tue Apr 01 14:56:26 2025 +0000
@@ -5,7 +5,7 @@
         </requirements>
     </xml>
     <token name="@TOOL_VERSION@">0.3.2-alpha</token>
-    <token name="@VERSION_SUFFIX@">6</token>
+    <token name="@VERSION_SUFFIX@">7</token>
     <token name="@PROFILE@">23.0</token>
     <xml name="edam_ontology">
         <edam_operations>
--- a/ncbi_egapx.xml	Tue Apr 01 14:26:36 2025 +0000
+++ b/ncbi_egapx.xml	Tue Apr 01 14:56:26 2025 +0000
@@ -214,7 +214,7 @@
            <data name="run_params" format="yaml" label="Nextflow run parameters" from_work_dir="egapx_out/run_params.yaml"/>
         </collection>
         <collection name="star_alignments" type="list" label="EGAPx STAR alignments for ${on_string}">
-            <discover_datasets pattern="bam\..+/(?P&lt;designation&gt;.+)\.bam" format="bam" directory="egapx_out" recurse="true" match_relative_path="true"/>
+            <discover_datasets pattern="(?:.+/)?bam\.[0-9A-Za-z]{10}/(?P&lt;designation&gt;.+)\.bam" format="bam" directory="egapx_out" recurse="true" match_relative_path="true"/>
             <filter>developer['collect_star_bams']</filter>
         </collection>
     </outputs>