Mercurial > repos > richard-burhans > ncbi_egapx

changeset 32:588b73318a45 draft default tip

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planemo upload for repository https://github.com/richard-burhans/galaxytools/tree/main/tools/ncbi_egapx commit 86859379a0c6185ccb7f150ed407bcb3bd684925
author richard-burhans
date Thu, 27 Mar 2025 16:57:03 +0000
parents 1429b9638055
children
files macros.xml ncbi_egapx.xml
diffstat 2 files changed, 23 insertions(+), 10 deletions(-) [+]
line wrap: on
line diff
--- a/macros.xml	Wed Mar 26 20:17:43 2025 +0000
+++ b/macros.xml	Thu Mar 27 16:57:03 2025 +0000
@@ -5,7 +5,7 @@
         </requirements>
     </xml>
     <token name="@TOOL_VERSION@">0.3.2-alpha</token>
-    <token name="@VERSION_SUFFIX@">4</token>
+    <token name="@VERSION_SUFFIX@">5</token>
     <token name="@PROFILE@">23.0</token>
     <xml name="edam_ontology">
         <edam_operations>
--- a/ncbi_egapx.xml	Wed Mar 26 20:17:43 2025 +0000
+++ b/ncbi_egapx.xml	Thu Mar 27 16:57:03 2025 +0000
@@ -220,18 +220,31 @@
     </outputs>
     <tests>
         <test expect_num_outputs="20" expect_test_failure="true">
-            <param name="input_style" value="fillform"/>
-            <param name="taxid" value="6954"/>
-            <param name="genome_style" value="uri"/>
-            <param name="uri" value="https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/020/809/275/GCF_020809275.1_ASM2080927v1/GCF_020809275.1_ASM2080927v1_genomic.fna.gz"/>
-            <param name="rnaseq_style" value="list"/>
-            <param name="rnaseq" value="https://ftp.ncbi.nlm.nih.gov/genomes/TOOLS/EGAP/sample_data/Dermatophagoides_farinae_small/SRR8506572_1.gz https://ftp.ncbi.nlm.nih.gov/genomes/TOOLS/EGAP/sample_data/Dermatophagoides_farinae_small/SRR8506572_2.gz https://ftp.ncbi.nlm.nih.gov/genomes/TOOLS/EGAP/sample_data/Dermatophagoides_farinae_small/SRR9005248_1.gz https://ftp.ncbi.nlm.nih.gov/genomes/TOOLS/EGAP/sample_data/Dermatophagoides_farinae_small/SRR9005248_2.gz"/>
+            <conditional name="cond_input_style">
+                <param name="input_style" value="fillform"/>
+                <conditional name="cond_genome_style">
+                    <param name="genome_style" value="uri"/>
+                    <param name="uri" value="https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/020/809/275/GCF_020809275.1_ASM2080927v1/GCF_020809275.1_ASM2080927v1_genomic.fna.gz"/>
+                </conditional>
+                <param name="taxid" value="6954"/>
+                <conditional name="cond_rnaseq_style">
+                    <param name="rnaseq_style" value="list"/>
+                    <param name="rnaseq" value="https://ftp.ncbi.nlm.nih.gov/genomes/TOOLS/EGAP/sample_data/Dermatophagoides_farinae_small/SRR8506572_1.gz https://ftp.ncbi.nlm.nih.gov/genomes/TOOLS/EGAP/sample_data/Dermatophagoides_farinae_small/SRR8506572_2.gz https://ftp.ncbi.nlm.nih.gov/genomes/TOOLS/EGAP/sample_data/Dermatophagoides_farinae_small/SRR9005248_1.gz https://ftp.ncbi.nlm.nih.gov/genomes/TOOLS/EGAP/sample_data/Dermatophagoides_farinae_small/SRR9005248_2.gz"/>
+                </conditional>
+            </conditional>
+            <section name="developer">
+                <param name="collect_star_bams" value="true"/>
+            </section>
             <expand macro="test_outputs"/>
         </test>
         <test expect_num_outputs="21" expect_test_failure="true">
-            <param name="input_style" value="history"/>
-            <param name="yamlin" value="input.yaml"/>
-            <param name="collect_star_bams" value="true"/>
+            <conditional name="cond_input_style">
+                <param name="input_style" value="history"/>
+                <param name="yamlin" value="input.yaml"/>
+            </conditional>
+            <section name="developer">
+                <param name="collect_star_bams" value="true"/>
+            </section>
             <expand macro="test_outputs"/>
         </test>
     </tests>