Mercurial > repos > richard-burhans > ncbi_fcs_adaptor
diff serve.log @ 0:d55ad8533d58 draft default tip
planemo upload for repository https://github.com/richard-burhans/galaxytools/tree/main/tools/ncbi_fcs_adaptor commit 74ccb005520db16be005e6471e8624357aca7d94
| author | richard-burhans |
|---|---|
| date | Fri, 01 Mar 2024 18:26:57 +0000 |
| parents | |
| children |
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--- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/serve.log Fri Mar 01 18:26:57 2024 +0000 @@ -0,0 +1,4332 @@ +Created directory for Galaxy configuration [/tmp/tmpqrlh6ih1] +Writing dependency_resolvers_config_file to path /tmp/tmpqrlh6ih1/resolvers_conf.xml with contents [<dependency_resolvers> + <tool_shed_packages /> + <conda auto_init="True" auto_install="True" ensure_channels="conda-forge,bioconda,defaults" prefix="/afs/bx.psu.edu/home/rico/miniconda3" condarc_override="/scratch/rico/.planemo/condarc" /> + <conda versionless="true" auto_init="True" auto_install="True" ensure_channels="conda-forge,bioconda,defaults" prefix="/afs/bx.psu.edu/home/rico/miniconda3" condarc_override="/scratch/rico/.planemo/condarc" /> +</dependency_resolvers> +] +Writing tool_conf to path /tmp/tmpqrlh6ih1/tool_conf.xml with contents [<toolbox> + <tool file="data_source/upload.xml" /> + <tool file="/scratch/rico/galaxytools/tools/ncbi_fcs_adaptor/ncbi_fcs_adaptor.xml" /> +</toolbox> +] +Starting Galaxy with command [cd /scratch/rico/galaxy && if [ -d .venv ]; then GALAXY_VIRTUAL_ENV=.venv; else GALAXY_VIRTUAL_ENV=/scratch/rico/.planemo/gx_venv_3; fi && export GALAXY_VIRTUAL_ENV && echo "Set \$GALAXY_VIRTUAL_ENV to $GALAXY_VIRTUAL_ENV" && if [ -e "$GALAXY_VIRTUAL_ENV" ]; then echo "Virtual environment directory exists."; else echo "Virtual environment directory does not exist."; fi && if [ ! -e "$GALAXY_VIRTUAL_ENV" ]; then /scratch/rico/.venv/bin/virtualenv $GALAXY_VIRTUAL_ENV -p /scratch/rico/.venv/bin/python3; echo "Created virtualenv"; fi && echo "Set \$GALAXY_VIRTUAL_ENV to $GALAXY_VIRTUAL_ENV" && if [ -e "$GALAXY_VIRTUAL_ENV" ]; then echo "Virtual environment directory exists."; else echo "Virtual environment directory does not exist."; fi && if [ -e "$GALAXY_VIRTUAL_ENV" ]; then . "$GALAXY_VIRTUAL_ENV"/bin/activate; echo "Activated a virtualenv for Galaxy"; echo "$VIRTUAL_ENV"; else echo "Failed to activate virtualenv."; fi && bash -c 'pwd' && bash -c 'which python' && bash -c 'which pip' && bash -c 'echo $GALAXY_VIRTUAL_ENV' && bash -c 'echo $VIRTUAL_ENV' && bash -c 'ls -a' && /scratch/rico/galaxy/run.sh $COMMON_STARTUP_ARGS --server-name main] +With environment variables: +============================ +GALAXY_CONFIG_OVERRIDE_MASTER_API_KEY="test_key" +GALAXY_CONFIG_OVERRIDE_ADMIN_USERS="planemo@galaxyproject.org,test@bx.psu.edu" +GALAXY_CONFIG_OVERRIDE_EXPOSE_DATASET_PATH="True" +GALAXY_CONFIG_OVERRIDE_COLLECT_OUTPUTS_FROM="job_working_directory" +GALAXY_CONFIG_OVERRIDE_ALLOW_PATH_PASTE="True" +GALAXY_CONFIG_OVERRIDE_CHECK_MIGRATE_TOOLS="False" +GALAXY_CONFIG_OVERRIDE_USE_CACHED_DEPENDENCY_MANAGER="True" +GALAXY_CONFIG_OVERRIDE_BRAND="Configured by Planemo" +GALAXY_CONFIG_OVERRIDE_STRICT_CWL_VALIDATION="True" +GALAXY_CONFIG_OVERRIDE_CLEANUP_JOB="never" +GALAXY_CONFIG_OVERRIDE_SINGLE_USER="planemo@galaxyproject.org" +GALAXY_CONFIG_OVERRIDE_SERVER_NAME="main" +GALAXY_CONFIG_OVERRIDE_FTP_UPLOAD_DIR_TEMPLATE="${ftp_upload_dir}" +GALAXY_CONFIG_OVERRIDE_FTP_UPLOAD_PURGE="False" +GALAXY_CONFIG_OVERRIDE_FTP_UPLOAD_DIR="/scratch/rico/galaxytools/tools/ncbi_fcs_adaptor/test-data" +GALAXY_CONFIG_OVERRIDE_FTP_UPLOAD_SITE="Test Data" +GALAXY_CONFIG_OVERRIDE_CHECK_UPLOAD_CONTENT="False" +GALAXY_CONFIG_OVERRIDE_TOOL_DEPENDENCY_DIR="/tmp/tmpqrlh6ih1/deps" +GALAXY_CONFIG_OVERRIDE_FILE_PATH="/tmp/tmpqrlh6ih1/files" +GALAXY_CONFIG_OVERRIDE_NEW_FILE_PATH="/tmp/tmpqrlh6ih1/tmp" +GALAXY_CONFIG_OVERRIDE_TOOL_CONFIG_FILE="/tmp/tmpqrlh6ih1/tool_conf.xml,/tmp/tmpqrlh6ih1/shed_tools_conf.xml" +GALAXY_CONFIG_OVERRIDE_TOOL_SHEDS_CONFIG_FILE="/tmp/tmpqrlh6ih1/tool_sheds_conf.xml" +GALAXY_CONFIG_OVERRIDE_MANAGE_DEPENDENCY_RELATIONSHIPS="False" +GALAXY_CONFIG_OVERRIDE_JOB_WORKING_DIRECTORY="/tmp/tmpqrlh6ih1/job_working_directory" +GALAXY_CONFIG_OVERRIDE_TEMPLATE_CACHE_PATH="/tmp/tmpqrlh6ih1/compiled_templates" +GALAXY_CONFIG_OVERRIDE_CITATION_CACHE_TYPE="file" +GALAXY_CONFIG_OVERRIDE_CITATION_CACHE_DATA_DIR="/tmp/tmpqrlh6ih1/citations/data" +GALAXY_CONFIG_OVERRIDE_CITATION_CACHE_LOCK_DIR="/tmp/tmpqrlh6ih1/citations/lock" +GALAXY_CONFIG_OVERRIDE_DATABASE_AUTO_MIGRATE="True" +GALAXY_CONFIG_OVERRIDE_ENABLE_BETA_TOOL_FORMATS="True" +GALAXY_CONFIG_OVERRIDE_ID_SECRET="f6141d9059f331976b6b66b722a14f48" +GALAXY_CONFIG_OVERRIDE_LOG_LEVEL="DEBUG" +GALAXY_CONFIG_OVERRIDE_DEBUG="true" +GALAXY_CONFIG_OVERRIDE_WATCH_TOOLS="auto" +GALAXY_CONFIG_OVERRIDE_DEFAULT_JOB_SHELL="/bin/bash" +GALAXY_CONFIG_OVERRIDE_INTEGRATED_TOOL_PANEL_CONFIG="/tmp/tmpqrlh6ih1/integrated_tool_panel_conf.xml" +GALAXY_CONFIG_OVERRIDE_MIGRATED_TOOLS_CONFIG="/tmp/tmpqrlh6ih1/empty_tool_conf.xml" +GALAXY_CONFIG_OVERRIDE_TEST_DATA_DIR="/scratch/rico/galaxytools/tools/ncbi_fcs_adaptor/test-data" +GALAXY_CONFIG_OVERRIDE_SHED_DATA_MANAGER_CONFIG_FILE="/tmp/tmpqrlh6ih1/shed_data_manager_conf.xml" +GALAXY_CONFIG_OVERRIDE_OUTPUTS_TO_WORKING_DIRECTORY="True" +GALAXY_CONFIG_OVERRIDE_OBJECT_STORE_STORE_BY="uuid" +GALAXY_CONFIG_OVERRIDE_DATABASE_CONNECTION="sqlite:////tmp/tmpqrlh6ih1/galaxy.sqlite?isolation_level=IMMEDIATE" +GALAXY_CONFIG_OVERRIDE_JOB_CONFIG_FILE="/scratch/rico/galaxytools/tools/ncbi_fcs_adaptor/planemo_job_conf.xml" +GALAXY_CONFIG_OVERRIDE_JOB_METRICS_CONFIG_FILE="/tmp/tmpqrlh6ih1/job_metrics_conf.xml" +GALAXY_CONFIG_OVERRIDE_DEPENDENCY_RESOLVERS_CONFIG_FILE="/tmp/tmpqrlh6ih1/resolvers_conf.xml" +GALAXY_DEVELOPMENT_ENVIRONMENT="1" +GALAXY_LOG="main.log" +GALAXY_PID="main.pid" +GALAXY_CONFIG_FILE="/tmp/tmpqrlh6ih1/galaxy.yml" +GRAVITY_STATE_DIR="/tmp/tmpqrlh6ih1/gravity" +SUPERVISORD_SOCKET="/tmp/tmpwpqnbgo4.sock" +============================ +galaxy.util.commands WARNING 2024-02-23 14:19:34,170: Passing program arguments as a string may be a security hazard if combined with untrusted input +Set $GALAXY_VIRTUAL_ENV to /scratch/rico/.planemo/gx_venv_3 +Virtual environment directory does not exist. +created virtual environment CPython3.7.3.final.0-64 in 1093ms + creator CPython3Posix(dest=/scratch/rico/.planemo/gx_venv_3, clear=False, no_vcs_ignore=False, global=False) + seeder FromAppData(download=False, pip=bundle, setuptools=bundle, wheel=bundle, via=copy, app_data_dir=/afs/bx.psu.edu/home/rico/.local/share/virtualenv) + added seed packages: pip==23.3.2, setuptools==68.0.0, wheel==0.42.0 + activators BashActivator,CShellActivator,FishActivator,NushellActivator,PowerShellActivator,PythonActivator +Created virtualenv +Set $GALAXY_VIRTUAL_ENV to /scratch/rico/.planemo/gx_venv_3 +Virtual environment directory exists. +Activated a virtualenv for Galaxy +/scratch/rico/.planemo/gx_venv_3 +/scratch/rico/galaxy +/scratch/rico/.planemo/gx_venv_3/bin/python +/scratch/rico/.planemo/gx_venv_3/bin/pip +/scratch/rico/.planemo/gx_venv_3 +/scratch/rico/.planemo/gx_venv_3 +. +.. +check_model.sh +.ci +.circleci +CITATION +client +CODE_OF_CONDUCT.md +config +contrib +CONTRIBUTING.md +CONTRIBUTORS.md +.coveragerc +cron +database +doc +.dockerignore +extract_dataset_parts.sh +.flake8 +.git +.gitattributes +.git-blame-ignore-revs +.github +.gitignore +.gitpod.yml +hooks +.isort.cfg +.k8s_ci.Dockerfile +lib +LICENSE.txt +main.log +Makefile +manage_db.sh +manage_toolshed_db.sh +mypy.ini +package.json +packages +.pre-commit-config.yaml.sample +pyproject.toml +pytest.ini +README.rst +.redocly.lint-ignore.yaml +.redocly.yaml +requirements.txt +rolling_restart.sh +run_reports.sh +run.sh +run_tests.sh +run_tool_shed.sh +scripts +SECURITY.md +static +templates +test +test-data +tool-data +tools +tox.ini +tsconfig.json +.vscode +Activating virtualenv at /scratch/rico/.planemo/gx_venv_3 +Requirement already satisfied: pip>=20.3 in /scratch/rico/.planemo/gx_venv_3/lib/python3.7/site-packages (23.3.2) +Requirement already satisfied: wheel in /scratch/rico/.planemo/gx_venv_3/lib/python3.7/site-packages (0.42.0) + +[notice] A new release of pip is available: 23.3.2 -> 24.0 +[notice] To update, run: pip install --upgrade pip +Looking in indexes: https://wheels.galaxyproject.org/simple, https://pypi.python.org/simple +Ignoring billiard: markers 'python_version >= "3.8" and python_version < "3.12"' don't match your environment +Ignoring celery: markers 'python_version >= "3.8" and python_version < "3.12"' don't match your environment +Ignoring colorama: markers 'python_version >= "3.7" and python_version < "3.12" and platform_system == "Windows"' don't match your environment +Ignoring kombu: markers 'python_version >= "3.8" and python_version < "3.12"' don't match your environment +Ignoring numpy: markers 'python_version >= "3.8" and python_version < "3.9"' don't match your environment +Ignoring numpy: markers 'python_version >= "3.9" and python_version < "3.12"' don't match your environment +Ignoring pyreadline3: markers 'sys_platform == "win32" and python_version >= "3.8" and python_version < "3.12"' don't match your environment +Ignoring pyreadline: markers 'sys_platform == "win32" and python_version < "3.8" and python_version >= "3.7"' don't match your environment +Ignoring tzdata: markers 'python_version >= "3.7" and python_version < "3.12" and platform_system == "Windows"' don't match your environment +Collecting a2wsgi==1.7.0 (from -r requirements.txt (line 1)) + Using cached a2wsgi-1.7.0-py3-none-any.whl.metadata (1.6 kB) +Collecting adal==1.2.7 (from -r requirements.txt (line 2)) + Using cached adal-1.2.7-py2.py3-none-any.whl (55 kB) +Collecting aiobotocore==2.4.2 (from -r requirements.txt (line 3)) + Using cached aiobotocore-2.4.2-py3-none-any.whl.metadata (19 kB) +Collecting aiodataloader==0.4.0 (from -r requirements.txt (line 4)) + Using cached aiodataloader-0.4.0-py3-none-any.whl.metadata (16 kB) +Collecting aiofiles==23.2.1 (from -r requirements.txt (line 5)) + Using cached 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kB) +Using cached yarl-1.9.3-cp37-cp37m-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (288 kB) +Using cached zipp-3.15.0-py3-none-any.whl (6.8 kB) +Using cached zstandard-0.21.0-cp37-cp37m-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (2.7 MB) +Installing collected packages: zipstream-new, whoosh, webencodings, wcwidth, ubiquerg, sqlitedict, sortedcontainers, shellescape, repoze-lru, pytz, pyeventsystem, parsley, msgpack, mistune, mercurial, edam-ontology, docopt, dictobj, cached-property, boto, boltons, billiard, beaker, bagit, arcp, appdirs, aniso8601, zstandard, zipp, wrapt, webob, vine, uvloop, urllib3, typing-extensions, tqdm, tornado, tomli, tinydb, tenacity, svgwrite, supervisor, sqlparse, sniffio, six, setuptools-scm, ruamel-yaml-clib, regex, pyzmq, pyyaml, python-multipart, python-magic, pysam, pyrsistent, pyparsing, pygments, pycryptodome, pycparser, pyasn1, psutil, prompt-toolkit, pkgutil-resolve-name, pebble, packaging, orjson, oauthlib, numpy, nodeenv, mypy-extensions, multidict, mdurl, markupsafe, lxml, lagom, jsonref, jmespath, isal, idna, humanfriendly, greenlet, future, fsspec, frozenlist, filelock, exceptiongroup, docutils, dnspython, defusedxml, decorator, cheetah3, charset-normalizer, certifi, bcrypt, backports-zoneinfo, babel, attmap, asynctest, aiofiles, a2wsgi, yarl, tzlocal, tuswsgi, tifffile, ruamel-yaml, rsa, routes, requests, python3-openid, python-dateutil, pyjwt, pydot, pydantic, promise, paste, oyaml, networkx, mrcfile, markdown-it-py, jinja2, isodate, importlib-resources, importlib-metadata, h5py, h11, graphql-core, galaxy-sequence-utils, fs, email-validator, ecdsa, dparse, deprecation, coloredlogs, circus, cffi, bx-python, bleach, async-timeout, apispec, anyio, amqp, aiosignal, aioitertools, aiodataloader, starlette, sqlalchemy, rich, requests-unixsocket, requests-toolbelt, requests-oauthlib, rdflib, python-jose, pynacl, pylibmagic, pykwalify, pyfaidx, pydantic-tes, pastedeploy, markdown, mako, kombu, isa-rwval, h5grove, gunicorn, graphql-relay, cryptography, conda-package-streaming, cloudbridge, click, cachecontrol, botocore, bagit-profile, attrs, argcomplete, uvicorn, starlette-context, social-auth-core, prov, paramiko, jsonschema, gravity, graphene, fastapi, click-repl, click-plugins, click-didyoumean, bdbag, alembic, aiohttp, adal, yacman, tuspy, starlette-graphene3, schema-salad, pulsar-galaxy-lib, msal, graphene-sqlalchemy, fastapi-utils, cloudauthz, celery, aiobotocore, s3fs, refgenconf, cwl-upgrader, bioblend, gxformat2, cwl-utils, galaxy2cwl, cwltool, rocrate +Successfully installed a2wsgi-1.7.0 adal-1.2.7 aiobotocore-2.4.2 aiodataloader-0.4.0 aiofiles-23.2.1 aiohttp-3.8.6 aioitertools-0.11.0 aiosignal-1.3.1 alembic-1.12.1 amqp-5.2.0 aniso8601-9.0.1 anyio-3.7.1 apispec-6.3.0 appdirs-1.4.4 arcp-0.2.1 argcomplete-3.1.2 async-timeout-4.0.3 asynctest-0.13.0 attmap-0.13.2 attrs-23.1.0 babel-2.13.1 backports-zoneinfo-0.2.1 bagit-1.8.1 bagit-profile-1.3.1 bcrypt-4.0.1 bdbag-1.7.1 beaker-1.12.1 billiard-3.6.4.0 bioblend-1.2.0 bleach-6.0.0 boltons-23.1.1 boto-2.49.0 botocore-1.27.59 bx-python-0.10.0 cachecontrol-0.13.1 cached-property-1.5.2 celery-5.2.7 certifi-2023.11.17 cffi-1.15.1 charset-normalizer-3.3.2 cheetah3-3.2.6.post1 circus-0.18.0 click-8.1.7 click-didyoumean-0.3.0 click-plugins-1.1.1 click-repl-0.3.0 cloudauthz-0.6.0 cloudbridge-3.2.0 coloredlogs-15.0.1 conda-package-streaming-0.9.0 cryptography-41.0.5 cwl-upgrader-1.2.8 cwl-utils-0.28 cwltool-3.1.20221109155812 decorator-5.1.1 defusedxml-0.7.1 deprecation-2.1.0 dictobj-0.4 dnspython-2.3.0 docopt-0.6.2 docutils-0.18.1 dparse-0.6.3 ecdsa-0.18.0 edam-ontology-1.25.2 email-validator-2.0.0.post2 exceptiongroup-1.2.0 fastapi-0.98.0 fastapi-utils-0.2.1 filelock-3.12.2 frozenlist-1.3.3 fs-2.4.16 fsspec-2023.1.0 future-0.18.3 galaxy-sequence-utils-1.1.5 galaxy2cwl-0.1.4 graphene-3.3 graphene-sqlalchemy-3.0.0b3 graphql-core-3.2.3 graphql-relay-3.2.0 gravity-1.0.4 greenlet-2.0.2 gunicorn-21.2.0 gxformat2-0.18.0 h11-0.14.0 h5grove-1.3.0 h5py-3.8.0 humanfriendly-10.0 idna-3.5 importlib-metadata-4.13.0 importlib-resources-5.12.0 isa-rwval-0.10.10 isal-1.3.0 isodate-0.6.1 jinja2-3.1.2 jmespath-1.0.1 jsonref-1.1.0 jsonschema-4.17.3 kombu-5.2.4 lagom-2.6.0 lxml-4.9.3 mako-1.2.4 markdown-3.4.4 markdown-it-py-2.2.0 markupsafe-2.1.3 mdurl-0.1.2 mercurial-6.6 mistune-2.0.5 mrcfile-1.4.3 msal-1.25.0 msgpack-1.0.5 multidict-6.0.4 mypy-extensions-1.0.0 networkx-2.5 nodeenv-1.8.0 numpy-1.21.6 oauthlib-3.2.2 orjson-3.9.7 oyaml-1.0 packaging-23.2 paramiko-3.3.1 parsley-1.3 paste-3.7.1 pastedeploy-3.1.0 pebble-5.0.4 pkgutil-resolve-name-1.3.10 promise-2.3 prompt-toolkit-3.0.41 prov-1.5.1 psutil-5.9.6 pulsar-galaxy-lib-0.15.5 pyasn1-0.5.1 pycparser-2.21 pycryptodome-3.19.0 pydantic-1.10.13 pydantic-tes-0.1.5 pydot-1.4.2 pyeventsystem-0.1.0 pyfaidx-0.7.2.2 pygments-2.17.2 pyjwt-2.8.0 pykwalify-1.8.0 pylibmagic-0.5.0 pynacl-1.5.0 pyparsing-3.0.9 pyrsistent-0.19.3 pysam-0.22.0 python-dateutil-2.8.2 python-jose-3.3.0 python-magic-0.4.27 python-multipart-0.0.7 python3-openid-3.2.0 pytz-2023.3.post1 pyyaml-6.0.1 pyzmq-25.1.1 rdflib-6.2.0 refgenconf-0.12.2 regex-2023.10.3 repoze-lru-0.7 requests-2.31.0 requests-oauthlib-1.3.1 requests-toolbelt-1.0.0 requests-unixsocket-0.3.0 rich-13.7.0 rocrate-0.9.0 routes-2.5.1 rsa-4.9 ruamel-yaml-0.17.21 ruamel-yaml-clib-0.2.8 s3fs-2023.1.0 schema-salad-8.4.20230808163024 setuptools-scm-5.0.2 shellescape-3.8.1 six-1.16.0 sniffio-1.3.0 social-auth-core-4.0.3 sortedcontainers-2.4.0 sqlalchemy-1.4.50 sqlitedict-2.1.0 sqlparse-0.4.4 starlette-0.27.0 starlette-context-0.3.5 starlette-graphene3-0.6.0 supervisor-4.2.5 svgwrite-1.4.3 tenacity-8.2.3 tifffile-2021.11.2 tinydb-4.8.0 tomli-2.0.1 tornado-6.2 tqdm-4.66.1 tuspy-1.0.1 tuswsgi-0.5.5 typing-extensions-4.7.1 tzlocal-5.1 ubiquerg-0.6.3 urllib3-1.26.18 uvicorn-0.22.0 uvloop-0.18.0 vine-5.1.0 wcwidth-0.2.12 webencodings-0.5.1 webob-1.8.7 whoosh-2.7.4 wrapt-1.16.0 yacman-0.9.2 yarl-1.9.3 zipp-3.15.0 zipstream-new-1.1.8 zstandard-0.21.0 + +[notice] A new release of pip is available: 23.3.2 -> 24.0 +[notice] To update, run: pip install --upgrade pip + +[notice] A new release of pip is available: 23.3.2 -> 24.0 +[notice] To update, run: pip install --upgrade pip +Looking in indexes: https://wheels.galaxyproject.org/simple, https://pypi.python.org/simple +Collecting watchdog (from -r /dev/stdin (line 1)) + Using cached watchdog-3.0.0-py3-none-manylinux2014_x86_64.whl.metadata (36 kB) +Using cached watchdog-3.0.0-py3-none-manylinux2014_x86_64.whl (82 kB) +Installing collected packages: watchdog +Successfully installed watchdog-3.0.0 + +[notice] A new release of pip is available: 23.3.2 -> 24.0 +[notice] To update, run: pip install --upgrade pip +Installing node into /scratch/rico/.planemo/gx_venv_3 with nodeenv. + * Install prebuilt node (18.12.1) ..... done. + * Appending data to /scratch/rico/.planemo/gx_venv_3/bin/activate + * Appending data to /scratch/rico/.planemo/gx_venv_3/bin/activate.fish +The Galaxy client build is up to date and will not be rebuilt at this time. +Activating virtualenv at /scratch/rico/.planemo/gx_venv_3 +Adding service gunicorn +supervisord is not running +Adding service celery +supervisord is not running +Adding service celery-beat +supervisord is not running +Executing: galaxy +2024-02-23 14:21:29,531 WARN No file matches via include "/tmp/tmpqrlh6ih1/gravity/supervisor/supervisord.conf.d/*.conf" +2024-02-23 14:21:29,531 INFO Included extra file "/tmp/tmpqrlh6ih1/gravity/supervisor/supervisord.conf.d/_default_.d/galaxy_celery-beat_celery-beat.conf" during parsing +2024-02-23 14:21:29,531 INFO Included extra file "/tmp/tmpqrlh6ih1/gravity/supervisor/supervisord.conf.d/_default_.d/galaxy_celery_celery.conf" during parsing +2024-02-23 14:21:29,531 INFO Included extra file "/tmp/tmpqrlh6ih1/gravity/supervisor/supervisord.conf.d/_default_.d/galaxy_gunicorn_gunicorn.conf" during parsing +2024-02-23 14:21:29,535 INFO RPC interface 'supervisor' initialized +2024-02-23 14:21:29,536 CRIT Server 'unix_http_server' running without any HTTP authentication checking +2024-02-23 14:21:29,536 INFO supervisord started with pid 78500 +2024-02-23 14:21:29,833 INFO spawned: 'celery' with pid 78503 +2024-02-23 14:21:29,836 INFO spawned: 'celery-beat' with pid 78504 +2024-02-23 14:21:29,839 INFO spawned: 'gunicorn' with pid 78505 +==> /tmp/tmpqrlh6ih1/gravity/log/gunicorn.log <== + +==> /tmp/tmpqrlh6ih1/gravity/log/celery.log <== + +==> /tmp/tmpqrlh6ih1/gravity/log/celery-beat.log <== +Working directory: /scratch/rico/galaxy +Executing: PYTHONPATH=lib GALAXY_CONFIG_FILE=/tmp/tmpqrlh6ih1/galaxy.yml celery --app galaxy.celery beat --loglevel DEBUG --schedule /tmp/tmpqrlh6ih1/gravity/celery-beat-schedule + +==> /tmp/tmpqrlh6ih1/gravity/log/celery.log <== +Working directory: /scratch/rico/galaxy +Executing: PYTHONPATH=lib GALAXY_CONFIG_FILE=/tmp/tmpqrlh6ih1/galaxy.yml celery --app galaxy.celery worker --concurrency 2 --loglevel DEBUG --pool threads --queues celery,galaxy.internal,galaxy.external + +==> /tmp/tmpqrlh6ih1/gravity/log/gunicorn.log <== +Working directory: /scratch/rico/galaxy +Executing: PYTHONPATH=lib GALAXY_CONFIG_FILE=/tmp/tmpqrlh6ih1/galaxy.yml gunicorn 'galaxy.webapps.galaxy.fast_factory:factory()' --timeout 300 --pythonpath lib -k galaxy.webapps.galaxy.workers.Worker -b localhost:9090 --workers=1 --config python:galaxy.web_stack.gunicorn_config --preload + +==> /tmp/tmpqrlh6ih1/gravity/log/celery.log <== +Option master_api_key has been deprecated in favor of bootstrap_admin_api_key +No corresponding location name exists for location code: . + +==> /tmp/tmpqrlh6ih1/gravity/log/celery-beat.log <== +Option master_api_key has been deprecated in favor of bootstrap_admin_api_key +No corresponding location name exists for location code: . + +==> /tmp/tmpqrlh6ih1/gravity/log/gunicorn.log <== +Option master_api_key has been deprecated in favor of bootstrap_admin_api_key +No corresponding location name exists for location code: . +DEBUG:yacman.yacman:Patching yaml loader +DEBUG:yacman.yacman1:Using yacman version 0.9.2 + +==> /tmp/tmpqrlh6ih1/gravity/log/celery.log <== +[2024-02-23 14:21:33,665: DEBUG/MainProcess] | Worker: Preparing bootsteps. +[2024-02-23 14:21:33,667: DEBUG/MainProcess] | Worker: Building graph... +[2024-02-23 14:21:33,668: DEBUG/MainProcess] | Worker: New boot order: {Timer, Hub, Pool, Autoscaler, StateDB, Beat, Consumer} +[2024-02-23 14:21:33,673: DEBUG/MainProcess] | Consumer: Preparing bootsteps. +[2024-02-23 14:21:33,673: DEBUG/MainProcess] | Consumer: Building graph... +[2024-02-23 14:21:33,689: DEBUG/MainProcess] | Consumer: New boot order: {Connection, Events, Mingle, Gossip, Tasks, Control, Agent, Heart, event loop} + + -------------- celery@laila v5.2.7 (dawn-chorus) +--- ***** ----- +-- ******* ---- Linux-4.19.0-26-amd64-x86_64-with-debian-10.13 2024-02-23 14:21:33 +- *** --- * --- +- ** ---------- [config] +- ** ---------- .> app: galaxy:0x7f9f17483748 +- ** ---------- .> transport: sqlalchemy+sqlite:////tmp/tmpqrlh6ih1/galaxy.sqlite +- ** ---------- .> results: disabled:// +- *** --- * --- .> concurrency: 2 (thread) +-- ******* ---- .> task events: OFF (enable -E to monitor tasks in this worker) +--- ***** ----- + -------------- [queues] + .> celery exchange=celery(direct) key=celery + .> galaxy.external exchange=galaxy.external(direct) key=galaxy.external + .> galaxy.internal exchange=galaxy.internal(direct) key=galaxy.internal + +[tasks] + . celery.accumulate + . celery.backend_cleanup + . celery.chain + . celery.chord + . celery.chord_unlock + . celery.chunks + . celery.group + . celery.map + . celery.starmap + . galaxy.change_datatype + . galaxy.clean_object_store_caches + . galaxy.cleanup_expired_notifications + . galaxy.cleanup_short_term_storage + . galaxy.compute_dataset_hash + . galaxy.export_history + . galaxy.fetch_data + . galaxy.finish_job + . galaxy.import_data_bundle + . galaxy.import_model_store + . galaxy.materialize + . galaxy.prepare_dataset_collection_download + . galaxy.prepare_history_content_download + . galaxy.prepare_history_download + . galaxy.prepare_invocation_download + . galaxy.prepare_pdf_download + . galaxy.prune_history_audit_table + . galaxy.purge_datasets + . galaxy.purge_hda + . galaxy.recalculate_user_disk_usage + . galaxy.set_job_metadata + . galaxy.set_metadata + . galaxy.setup_fetch_data + . galaxy.touch + . galaxy.write_history_content_to + . galaxy.write_history_to + . galaxy.write_invocation_to + +[2024-02-23 14:21:33,704: DEBUG/MainProcess] | Worker: Starting Pool +[2024-02-23 14:21:33,704: DEBUG/MainProcess] ^-- substep ok +[2024-02-23 14:21:33,704: DEBUG/MainProcess] | Worker: Starting Consumer +[2024-02-23 14:21:33,704: DEBUG/MainProcess] | Consumer: Starting Connection +[2024-02-23 14:21:33,711: INFO/MainProcess] Connected to sqlalchemy+sqlite:////tmp/tmpqrlh6ih1/galaxy.sqlite +[2024-02-23 14:21:33,712: DEBUG/MainProcess] ^-- substep ok +[2024-02-23 14:21:33,712: DEBUG/MainProcess] | Consumer: Starting Events +[2024-02-23 14:21:33,712: DEBUG/MainProcess] ^-- substep ok +[2024-02-23 14:21:33,712: DEBUG/MainProcess] | Consumer: Starting Tasks +[2024-02-23 14:21:33,762: DEBUG/MainProcess] ^-- substep ok +[2024-02-23 14:21:33,762: DEBUG/MainProcess] | Consumer: Starting Heart +[2024-02-23 14:21:33,762: DEBUG/MainProcess] ^-- substep ok +[2024-02-23 14:21:33,762: DEBUG/MainProcess] | Consumer: Starting event loop +[2024-02-23 14:21:33,762: INFO/MainProcess] celery@laila ready. + +==> /tmp/tmpqrlh6ih1/gravity/log/gunicorn.log <== +DEBUG:galaxy.app:python path is: /scratch/rico/galaxy, /scratch/rico/.planemo/gx_venv_3/bin, /scratch/rico/galaxy/lib, /usr/lib/python37.zip, /usr/lib/python3.7, /usr/lib/python3.7/lib-dynload, /scratch/rico/.planemo/gx_venv_3/lib/python3.7/site-packages +DEBUG:galaxy.config:Configuration directory is /tmp/tmpqrlh6ih1 +DEBUG:galaxy.config:Data directory is /scratch/rico/galaxy/database +DEBUG:galaxy.config:Managed config directory is /tmp/tmpqrlh6ih1 +WARNING:galaxy.config:Option master_api_key has been deprecated in favor of bootstrap_admin_api_key +DEBUG:galaxy.config:No extra version JSON file detected at /scratch/rico/galaxy/version.json +WARNING:galaxy.carbon_emissions:No corresponding location name exists for location code: . +INFO:galaxy.carbon_emissions:Using global default values for location name and carbon intensity... + +==> /tmp/tmpqrlh6ih1/gravity/log/celery-beat.log <== +[2024-02-23 14:21:34,069: DEBUG/MainProcess] Setting default socket timeout to 30 +[2024-02-23 14:21:34,069: INFO/MainProcess] beat: Starting... +[2024-02-23 14:21:34,090: DEBUG/MainProcess] Current schedule: +<ScheduleEntry: cleanup-expired-notifications galaxy.cleanup_expired_notifications() <freq: 1.00 day> +<ScheduleEntry: cleanup-short-term-storage galaxy.cleanup_short_term_storage() <freq: 1.00 hour> +<ScheduleEntry: clean-object-store-caches galaxy.clean_object_store_caches() <freq: 10.00 minutes> +<ScheduleEntry: prune-history-audit-table galaxy.prune_history_audit_table() <freq: 1.00 hour> +<ScheduleEntry: celery.backend_cleanup celery.backend_cleanup() <crontab: 0 4 * * * (m/h/d/dM/MY)> +[2024-02-23 14:21:34,090: DEBUG/MainProcess] beat: Ticking with max interval->5.00 minutes +[2024-02-23 14:21:34,090: DEBUG/MainProcess] beat: Waking up in 5.00 minutes. + +==> /tmp/tmpqrlh6ih1/gravity/log/gunicorn.log <== +INFO:alembic.runtime.migration:Context impl SQLiteImpl. +INFO:alembic.runtime.migration:Will assume non-transactional DDL. +INFO:alembic.runtime.migration:Running stamp_revision -> 8a19186a6ee7 +DEBUG:alembic.runtime.migration:new branch insert 8a19186a6ee7 +INFO:alembic.runtime.migration:Context impl SQLiteImpl. +INFO:alembic.runtime.migration:Will assume non-transactional DDL. +INFO:alembic.runtime.migration:Running stamp_revision -> d4a650f47a3c +DEBUG:alembic.runtime.migration:new branch insert d4a650f47a3c +INFO:galaxy.app:Install database targeting Galaxy's database configuration. +DEBUG:galaxy.web_stack:GunicornApplicationStack initialized +galaxy.jobs DEBUG 2024-02-23 14:21:34,770 [pN:main,p:78505,tN:MainThread] Loading job configuration from /scratch/rico/galaxytools/tools/ncbi_fcs_adaptor/planemo_job_conf.xml +galaxy.jobs DEBUG 2024-02-23 14:21:34,770 [pN:main,p:78505,tN:MainThread] Read job configuration from file: /scratch/rico/galaxytools/tools/ncbi_fcs_adaptor/planemo_job_conf.xml +galaxy.web_stack.handlers INFO 2024-02-23 14:21:34,781 [pN:main,p:78505,tN:MainThread] JobConfiguration: No job handler assignment method is set, defaulting to 'HANDLER_ASSIGNMENT_METHODS.DB_SKIP_LOCKED', set the `assign_with` attribute on <handlers> to override the default +galaxy.jobs INFO 2024-02-23 14:21:34,781 [pN:main,p:78505,tN:MainThread] Job handler assignment methods set to: db-skip-locked +galaxy.web_stack.handlers DEBUG 2024-02-23 14:21:34,781 [pN:main,p:78505,tN:MainThread] default set to child with id or tag 'docker_local' +galaxy.jobs DEBUG 2024-02-23 14:21:34,781 [pN:main,p:78505,tN:MainThread] Done loading job configuration +galaxy.security.vault WARNING 2024-02-23 14:21:34,965 [pN:main,p:78505,tN:MainThread] No vault configured. We recommend defining the vault_config_file setting in galaxy.yml +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,007 [pN:main,p:78505,tN:MainThread] Loading datatypes from /scratch/rico/galaxy/lib/galaxy/config/sample/datatypes_conf.xml.sample +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,008 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension source.h. +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,008 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension source.c. +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,008 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension source.cpp. +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,008 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension source.py. +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,009 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension source.go. +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,009 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension source.rs. +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,009 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension source.cs. +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,009 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:Binary from the datatype registry for extension hep.root. +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,009 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:JP2 from the datatype registry for extension jp2. +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,009 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:Ab1 from the datatype registry for extension ab1. +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,010 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.assembly:Amos from the datatype registry for extension afg. +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,010 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.goldenpath:GoldenPath from the datatype registry for extension agp. +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,011 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.anvio:AnvioComposite from the datatype registry for extension anvio_cog_profile. +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,011 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.anvio:AnvioComposite from the datatype registry for extension anvio_composite. +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,011 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:Data from the datatype registry for extension anvio_classifier. +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,011 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.anvio:AnvioContigsDB from the datatype registry for extension anvio_contigs_db. +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,012 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.anvio:AnvioDB from the datatype registry for extension anvio_db. +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,012 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.anvio:AnvioGenomesDB from the datatype registry for extension anvio_genomes_db. +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,012 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.anvio:AnvioPanDB from the datatype registry for extension anvio_pan_db. +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,012 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.anvio:AnvioComposite from the datatype registry for extension anvio_pfam_profile. +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,012 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.anvio:AnvioProfileDB from the datatype registry for extension anvio_profile_db. +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,012 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.anvio:AnvioSamplesDB from the datatype registry for extension anvio_samples_db. +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,012 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.text:Json from the datatype registry for extension anvio_state. +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,012 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.anvio:AnvioStructureDB from the datatype registry for extension anvio_structure_db. +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,012 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.tabular:TSV from the datatype registry for extension anvio_variability. +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,012 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.text:Arff from the datatype registry for extension arff. +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,013 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.text:Paf from the datatype registry for extension paf. +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,013 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.text:Gfa1 from the datatype registry for extension gfa1. +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,013 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.text:Gfa2 from the datatype registry for extension gfa2. +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,013 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:GenericAsn1 from the datatype registry for extension asn1. +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,013 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:GenericAsn1Binary from the datatype registry for extension asn1-binary. +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,013 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.sequence:Axt from the datatype registry for extension axt. +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,013 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.tabular:FeatureLocationIndex from the datatype registry for extension fli. +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,013 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:Bam from the datatype registry for extension bam. +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,013 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:Binary from the datatype registry for extension bai. +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,013 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:BamInputSorted from the datatype registry for extension qname_input_sorted.bam. +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,014 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:BamQuerynameSorted from the datatype registry for extension qname_sorted.bam. +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,014 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:BamNative from the datatype registry for extension unsorted.bam. +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,014 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:ProBam from the datatype registry for extension probam. +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,014 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:CRAM from the datatype registry for extension cram. +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,014 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.interval:Bed from the datatype registry for extension bed. +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,014 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.interval:BedGraph from the datatype registry for extension bedgraph. +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,014 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.interval:BedStrict from the datatype registry for extension bedstrict. +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,014 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.interval:Bed6 from the datatype registry for extension bed6. +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,014 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.interval:Bed12 from the datatype registry for extension bed12. +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,014 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.interval:ProBed from the datatype registry for extension probed. +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,015 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.chrominfo:ChromInfo from the datatype registry for extension len. +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,015 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:DAA from the datatype registry for extension daa. +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,015 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:RMA6 from the datatype registry for extension rma6. +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,015 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:DMND from the datatype registry for extension dmnd. +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,015 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:Parquet from the datatype registry for extension parquet. +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,015 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:Idat from the datatype registry for extension idat. +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,015 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:BigBed from the datatype registry for extension bigbed. +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,015 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:BigWig from the datatype registry for extension bigwig. +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,015 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:Binary from the datatype registry for extension cxb. +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,016 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.interval:ChromatinInteractions from the datatype registry for extension chrint. +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,016 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.tabular:CSV from the datatype registry for extension csv. +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,016 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.tabular:TSV from the datatype registry for extension tsv. +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,016 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.tabular:TSV from the datatype registry for extension intermine_tabular. +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,016 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.interval:CustomTrack from the datatype registry for extension customtrack. +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,016 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.ngsindex:BowtieColorIndex from the datatype registry for extension bowtie_color_index. +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,017 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.ngsindex:BowtieBaseIndex from the datatype registry for extension bowtie_base_index. +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,017 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.sequence:csFasta from the datatype registry for extension csfasta. +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,017 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:Data from the datatype registry for extension data. +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,017 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:Binary from the datatype registry for extension gz. +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,017 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:Binary from the datatype registry for extension binary. +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,017 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.text:Json from the datatype registry for extension d3_hierarchy. +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,017 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.text:ImgtJson from the datatype registry for extension imgt.json. +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,017 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.text:GeoJson from the datatype registry for extension geojson. +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,017 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.text:Json from the datatype registry for extension data_manager_json. +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,017 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.sequence:DotBracket from the datatype registry for extension dbn. +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,017 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.tabular:Tabular from the datatype registry for extension fai. +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,018 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.sequence:Fasta from the datatype registry for extension fasta. +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,018 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.sequence:Fastg from the datatype registry for extension fastg. +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,018 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.sequence:Fastq from the datatype registry for extension fastq. +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,018 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.sequence:FastqSanger from the datatype registry for extension fastqsanger. +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,018 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.sequence:FastqSolexa from the datatype registry for extension fastqsolexa. +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,019 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.sequence:FastqCSSanger from the datatype registry for extension fastqcssanger. +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,019 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.sequence:FastqIllumina from the datatype registry for extension fastqillumina. +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,019 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.sequence:SequenceSplitLocations from the datatype registry for extension fqtoc. +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,019 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.tabular:Eland from the datatype registry for extension eland. +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,019 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.tabular:ElandMulti from the datatype registry for extension elandmulti. +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,019 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.tracks:GeneTrack from the datatype registry for extension genetrack. +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,019 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.interval:Gff from the datatype registry for extension gff. +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,019 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.interval:Gff3 from the datatype registry for extension gff3. +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,020 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.images:Gif from the datatype registry for extension gif. +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,020 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.images:Gmaj from the datatype registry for extension gmaj.zip. +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,020 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension graph_dot. +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,020 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.interval:Gtf from the datatype registry for extension gtf. +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,020 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:Binary from the datatype registry for extension toolshed.gz. +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,020 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:Binary from the datatype registry for extension hdf4. +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,020 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:H5 from the datatype registry for extension h5. +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,020 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:H5 from the datatype registry for extension scool. +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,020 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:Grib from the datatype registry for extension grib. +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,021 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:Loom from the datatype registry for extension loom. +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,021 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:Anndata from the datatype registry for extension h5ad. +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,021 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:Visium from the datatype registry for extension visium.tar.gz. +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,021 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:H5 from the datatype registry for extension mz5. +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,021 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.text:Json from the datatype registry for extension hyphy_results.json. +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,021 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.text:Json from the datatype registry for extension hivtrace. +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,021 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:Cool from the datatype registry for extension cool. +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,021 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:MCool from the datatype registry for extension mcool. +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,021 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:H5MLM from the datatype registry for extension h5mlm. +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,021 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:LudwigModel from the datatype registry for extension ludwig_model. +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,021 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.text:Html from the datatype registry for extension html. +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,022 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.text:Html from the datatype registry for extension ludwig_report.html. +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,022 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.interval:Interval from the datatype registry for extension interval. +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,022 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:Binary from the datatype registry for extension jellyfish. +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,022 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:Binary from the datatype registry for extension ktab. +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,022 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:Binary from the datatype registry for extension hist. +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,022 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:Binary from the datatype registry for extension prof. +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,103 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.isa:IsaTab from the datatype registry for extension isa-tab. +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,103 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.isa:IsaJson from the datatype registry for extension isa-json. +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,103 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.tabular:Tabular from the datatype registry for extension picard_interval_list. +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,103 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension gatk_interval. +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,103 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension gatk_report. +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,104 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.tabular:Tabular from the datatype registry for extension gatk_dbsnp. +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,104 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.tabular:Tabular from the datatype registry for extension gatk_tranche. +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,104 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.tabular:Tabular from the datatype registry for extension gatk_recal. +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,104 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.tabular:Tabular from the datatype registry for extension cnn. +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,104 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.tabular:Tabular from the datatype registry for extension cns. +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,104 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.tabular:Tabular from the datatype registry for extension cnr. +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,104 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension hhr. +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,105 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.images:Jpg from the datatype registry for extension jpg. +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,105 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.images:Tiff from the datatype registry for extension tiff. +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,105 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.images:Tiff from the datatype registry for extension tf2. +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,105 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.images:Tiff from the datatype registry for extension tf8. +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,105 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.images:Tiff from the datatype registry for extension btf. +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,105 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.images:Tiff from the datatype registry for extension tif. +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,105 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.images:Tiff from the datatype registry for extension svs. +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,105 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.images:Tiff from the datatype registry for extension scn. +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,105 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.images:Tiff from the datatype registry for extension bif. +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,105 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.images:OMETiff from the datatype registry for extension ome.tiff. +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,106 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.images:Hamamatsu from the datatype registry for extension vms. +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,106 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.images:Hamamatsu from the datatype registry for extension vmu. +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,106 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.images:Hamamatsu from the datatype registry for extension ndpi. +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,106 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.images:Mirax from the datatype registry for extension mrxs. +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,106 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.images:Sakura from the datatype registry for extension svslide. +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,106 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.images:Bmp from the datatype registry for extension bmp. +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,106 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.images:Im from the datatype registry for extension im. +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,106 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.images:Pcd from the datatype registry for extension pcd. +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,106 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.images:Pcx from the datatype registry for extension pcx. +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,106 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.images:Ppm from the datatype registry for extension ppm. +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,106 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.images:Psd from the datatype registry for extension psd. +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,106 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.images:Xbm from the datatype registry for extension xbm. +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,106 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.images:Xpm from the datatype registry for extension xpm. +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,106 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.images:Rgb from the datatype registry for extension rgb. +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,107 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.images:Pbm from the datatype registry for extension pbm. +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,107 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.images:Pgm from the datatype registry for extension pgm. +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,107 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.images:Nrrd from the datatype registry for extension nrrd. +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,107 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.images:Nrrd from the datatype registry for extension nhdr. +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,107 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.sequence:RNADotPlotMatrix from the datatype registry for extension rna_eps. +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,108 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.qiime2:QIIME2Artifact from the datatype registry for extension qza. +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,108 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.qiime2:QIIME2Visualization from the datatype registry for extension qzv. +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,108 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.qiime2:QIIME2Metadata from the datatype registry for extension qiime2.tabular. +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,108 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:CompressedZipArchive from the datatype registry for extension zip. +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,108 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:CompressedZipArchive from the datatype registry for extension ncbi_genome_dataset.zip. +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,108 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:CompressedArchive from the datatype registry for extension tar. +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,108 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:Directory from the datatype registry for extension directory. +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,108 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.text:Yaml from the datatype registry for extension yaml. +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,109 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.tabular:Tabular from the datatype registry for extension mrm. +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,111 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.proteomics:Dta from the datatype registry for extension dta. +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,111 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.proteomics:Dta2d from the datatype registry for extension dta2d. +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,111 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.proteomics:Edta from the datatype registry for extension edta. +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,111 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.proteomics:PepXml from the datatype registry for extension pepxml. +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,111 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.proteomics:PepXml from the datatype registry for extension raw_pepxml. +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,111 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.proteomics:PepXml from the datatype registry for extension peptideprophet_pepxml. +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,111 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.proteomics:PepXml from the datatype registry for extension interprophet_pepxml. +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,111 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.proteomics:ProtXML from the datatype registry for extension protxml. +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,112 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.proteomics:ParamXml from the datatype registry for extension paramxml. +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,112 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.proteomics:Kroenik from the datatype registry for extension kroenik. +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,112 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.proteomics:PepList from the datatype registry for extension peplist. +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,112 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.proteomics:PSMS from the datatype registry for extension psms. +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,112 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.proteomics:PepXmlReport from the datatype registry for extension pepxml.tsv. +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,112 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.proteomics:ProtXmlReport from the datatype registry for extension protxml.tsv. +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,112 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.proteomics:MascotDat from the datatype registry for extension mascotdat. +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,112 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.proteomics:MzIdentML from the datatype registry for extension mzid. +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,112 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.proteomics:IdXML from the datatype registry for extension idxml. +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,112 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.proteomics:TandemXML from the datatype registry for extension tandem. +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,112 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension sirius.ms. +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,112 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.proteomics:ThermoRAW from the datatype registry for extension thermo.raw. +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,112 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:BafTar from the datatype registry for extension brukerbaf.d.tar. +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,113 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:YepTar from the datatype registry for extension agilentbrukeryep.d.tar. +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,113 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:TdfTar from the datatype registry for extension brukertdf.d.tar. +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,113 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:MassHunterTar from the datatype registry for extension agilentmasshunter.d.tar. +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,113 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:MassLynxTar from the datatype registry for extension watersmasslynx.raw.tar. +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,113 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:WiffTar from the datatype registry for extension wiff.tar. +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,113 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:Wiff2Tar from the datatype registry for extension wiff2.tar. +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,113 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.proteomics:MascotXML from the datatype registry for extension mascotxml. +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,113 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.proteomics:MzTab from the datatype registry for extension mztab. +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,113 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.proteomics:MzTab2 from the datatype registry for extension mztab2. +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,113 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.proteomics:MzML from the datatype registry for extension mzml. +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,113 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.proteomics:NmrML from the datatype registry for extension nmrml. +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,113 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:Meryldb from the datatype registry for extension meryldb. +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,113 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:Bref3 from the datatype registry for extension bref3. +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,114 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.proteomics:Mgf from the datatype registry for extension mgf. +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,114 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.proteomics:Wiff from the datatype registry for extension wiff. +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,114 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.proteomics:Wiff2 from the datatype registry for extension wiff2. +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,114 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.proteomics:MzXML from the datatype registry for extension mzxml. +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,114 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.proteomics:MzData from the datatype registry for extension mzdata. +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,114 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.proteomics:Ms2 from the datatype registry for extension ms2. +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,114 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.proteomics:MzQuantML from the datatype registry for extension mzq. +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,114 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:SQlite from the datatype registry for extension sqlite. +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,114 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:MzSQlite from the datatype registry for extension mz.sqlite. +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,114 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:OSW from the datatype registry for extension osw. +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,114 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:PQP from the datatype registry for extension pqp. +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,114 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.proteomics:TraML from the datatype registry for extension traml. +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,115 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.proteomics:TrafoXML from the datatype registry for extension trafoxml. +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,115 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.proteomics:FeatureXML from the datatype registry for extension featurexml. +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,115 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.proteomics:ConsensusXML from the datatype registry for extension consensusxml. +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,115 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.proteomics:UniProtXML from the datatype registry for extension uniprotxml. +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,115 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.proteomics:XquestXML from the datatype registry for extension xquest.xml. +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,115 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.proteomics:XquestSpecXML from the datatype registry for extension spec.xml. +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,115 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.proteomics:QCML from the datatype registry for extension qcml. +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,115 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.text:Json from the datatype registry for extension mzqc. +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,115 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.proteomics:Msp from the datatype registry for extension msp. +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,115 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.proteomics:SPLibNoIndex from the datatype registry for extension splib_noindex. +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,115 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.proteomics:SPLib from the datatype registry for extension splib. +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,115 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:BlibSQlite from the datatype registry for extension blib. +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,115 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:DlibSQlite from the datatype registry for extension dlib. +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,116 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:ElibSQlite from the datatype registry for extension elib. +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,116 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.proteomics:XHunterAslFormat from the datatype registry for extension hlf. +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,116 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:IdpDB from the datatype registry for extension idpdb. +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,116 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.proteomics:Sf3 from the datatype registry for extension sf3. +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,116 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:Binary from the datatype registry for extension cps. +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,116 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.tabular:ConnectivityTable from the datatype registry for extension ct. +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,116 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:PostgresqlArchive from the datatype registry for extension postgresql. +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,116 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:MongoDBArchive from the datatype registry for extension mongodb. +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,116 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:GeneNoteBook from the datatype registry for extension genenotebook. +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,116 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:SearchGuiArchive from the datatype registry for extension searchgui_archive. +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,116 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:Fast5Archive from the datatype registry for extension fast5.tar. +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,116 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:Fast5ArchiveGz from the datatype registry for extension fast5.tar.gz. +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,116 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:Fast5ArchiveBz2 from the datatype registry for extension fast5.tar.bz2. +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,117 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:CompressedArchive from the datatype registry for extension peptideshaker_archive. +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,117 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.tabular:Tabular from the datatype registry for extension percin. +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,117 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.xml:GenericXml from the datatype registry for extension percout. +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,117 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.tabular:Tabular from the datatype registry for extension hardklor. +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,117 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.tabular:Tabular from the datatype registry for extension kronik. +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,117 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.proteomics:ImzML from the datatype registry for extension imzml. +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,117 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.images:Analyze75 from the datatype registry for extension analyze75. +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,117 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.images:Nifti1 from the datatype registry for extension nii1. +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,117 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.images:Nifti2 from the datatype registry for extension nii2. +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,118 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.images:Gifti from the datatype registry for extension gii. +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,118 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.images:Tck from the datatype registry for extension tck. +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,118 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.images:Trk from the datatype registry for extension trk. +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,118 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.images:Mrc2014 from the datatype registry for extension mrc. +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,118 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.images:Star from the datatype registry for extension star. +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,118 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.proteomics:PEFF from the datatype registry for extension peff. +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,118 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension toml. +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,118 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.flow:FCS from the datatype registry for extension fcs. +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,119 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.tabular:Tabular from the datatype registry for extension flowtext. +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,119 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.tabular:Tabular from the datatype registry for extension flowclr. +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,119 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.tabular:Tabular from the datatype registry for extension flowmfi. +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,119 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.tabular:Tabular from the datatype registry for extension flowstat1. +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,119 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.tabular:Tabular from the datatype registry for extension flowstat2. +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,119 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.tabular:Tabular from the datatype registry for extension flowstat3. +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,119 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.tabular:Tabular from the datatype registry for extension flowscore. +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,120 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:RData from the datatype registry for extension flowframe. +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,120 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:RData from the datatype registry for extension fsom. +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,120 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:RData from the datatype registry for extension flowset. +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,120 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.tabular:Tabular from the datatype registry for extension metacyto_clr.txt. +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,120 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.metacyto:mSummary from the datatype registry for extension metacyto_summary.txt. +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,120 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.metacyto:mStats from the datatype registry for extension metacyto_stats.txt. +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,120 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:CompressedArchive from the datatype registry for extension deeptools_compute_matrix_archive. +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,121 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:CompressedArchive from the datatype registry for extension deeptools_coverage_matrix. +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,121 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:NetCDF from the datatype registry for extension netcdf. +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,121 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.images:Eps from the datatype registry for extension eps. +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,121 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.images:Rast from the datatype registry for extension rast. +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,121 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.images:Laj from the datatype registry for extension laj. +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,121 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.sequence:Lav from the datatype registry for extension lav. +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,121 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.sequence:Maf from the datatype registry for extension maf. +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,121 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.sequence:MafCustomTrack from the datatype registry for extension mafcustomtrack. +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,121 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.tabular:MatrixMarket from the datatype registry for extension mtx. +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,121 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.tabular:CMAP from the datatype registry for extension cmap. +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,121 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.interval:ENCODEPeak from the datatype registry for extension encodepeak. +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,122 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.images:Pdf from the datatype registry for extension pdf. +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,122 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.tabular:Pileup from the datatype registry for extension pileup. +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,122 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.tabular:Psl from the datatype registry for extension psl. +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,122 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.text:Obo from the datatype registry for extension obo. +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,122 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.xml:Owl from the datatype registry for extension owl. +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,122 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.images:Png from the datatype registry for extension png. +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,122 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.qualityscore:QualityScore from the datatype registry for extension qual. +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,122 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.qualityscore:QualityScoreSolexa from the datatype registry for extension qualsolexa. +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,122 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.qualityscore:QualityScoreIllumina from the datatype registry for extension qualillumina. +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,122 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.qualityscore:QualityScoreSOLiD from the datatype registry for extension qualsolid. +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,122 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.qualityscore:QualityScore454 from the datatype registry for extension qual454. +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,122 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.assembly:Roadmaps from the datatype registry for extension roadmaps. +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,122 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.tabular:Sam from the datatype registry for extension sam. +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,123 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:Scf from the datatype registry for extension scf. +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,123 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.assembly:Sequences from the datatype registry for extension sequences. +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,123 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.text:SnpEffDb from the datatype registry for extension snpeffdb. +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,123 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.text:SnpSiftDbNSFP from the datatype registry for extension snpsiftdbnsfp. +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,123 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.tabular:Tabular from the datatype registry for extension dbnsfp.tabular. +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,123 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:Sff from the datatype registry for extension sff. +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,123 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:Sra from the datatype registry for extension sra. +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,123 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.tabular:SraManifest from the datatype registry for extension sra_manifest.tabular. +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,123 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.xml:GenericXml from the datatype registry for extension svg. +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,123 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.tabular:Taxonomy from the datatype registry for extension taxonomy. +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,123 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.tabular:Tabular from the datatype registry for extension tabular. +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,124 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:TwoBit from the datatype registry for extension twobit. +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,124 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:SQmass from the datatype registry for extension sqmass. +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,124 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:GeminiSQLite from the datatype registry for extension gemini.sqlite. +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,124 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:ChiraSQLite from the datatype registry for extension chira.sqlite. +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,124 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:CuffDiffSQlite from the datatype registry for extension cuffdiff.sqlite. +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,124 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:GAFASQLite from the datatype registry for extension gafa.sqlite. +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,124 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:NcbiTaxonomySQlite from the datatype registry for extension ncbitaxonomy.sqlite. +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,124 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension txt. +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,124 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:LineCount from the datatype registry for extension linecount. +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,124 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.sequence:MemePsp from the datatype registry for extension memepsp. +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,124 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.xml:MEMEXml from the datatype registry for extension memexml. +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,124 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.xml:CisML from the datatype registry for extension cisml. +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,125 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.xml:GenericXml from the datatype registry for extension xml. +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,125 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.xml:GenericXml from the datatype registry for extension xsd. +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,125 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.xml:Dzi from the datatype registry for extension dzi. +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,125 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.tabular:Vcf from the datatype registry for extension vcf. +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,125 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:Bcf from the datatype registry for extension bcf. +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,125 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:Bcf from the datatype registry for extension bcf_bgzip. +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,126 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:BcfUncompressed from the datatype registry for extension bcf_uncompressed. +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,126 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.assembly:Velvet from the datatype registry for extension velvet. +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,126 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.interval:Wiggle from the datatype registry for extension wig. +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,126 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:Binary from the datatype registry for extension interval_index. +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,127 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:Binary from the datatype registry for extension odgi. +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,127 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:CompressedArchive from the datatype registry for extension vg. +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,127 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:Binary from the datatype registry for extension xg. +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,127 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:Binary from the datatype registry for extension protobuf2. +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,127 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:Binary from the datatype registry for extension protobuf3. +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,127 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:Binary from the datatype registry for extension onnx. +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,127 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:Binary from the datatype registry for extension tabix. +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,127 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.interval:IntervalTabix from the datatype registry for extension interval_tabix.gz. +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,127 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.interval:JuicerMediumTabix from the datatype registry for extension juicer_medium_tabix.gz. +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,127 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.interval:BedTabix from the datatype registry for extension bed_tabix.gz. +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,128 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.interval:GffTabix from the datatype registry for extension gff_tabix.gz. +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,128 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:Binary from the datatype registry for extension bgzip. +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,128 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.tabular:VcfGz from the datatype registry for extension vcf_bgzip. +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,128 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:Binary from the datatype registry for extension bus. +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,128 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:Binary from the datatype registry for extension kallisto.idx. +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,128 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.xml:Phyloxml from the datatype registry for extension phyloxml. +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,128 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:Newick from the datatype registry for extension newick. +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,128 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:Newick from the datatype registry for extension nhx. +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,128 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:Nexus from the datatype registry for extension nex. +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,128 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.text:IQTree from the datatype registry for extension iqtree. +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,130 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.mothur:SquareDistanceMatrix from the datatype registry for extension mldist. +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,132 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.genetics:Affybatch from the datatype registry for extension affybatch. +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,133 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.genetics:Eigenstratgeno from the datatype registry for extension eigenstratgeno. +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,133 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.genetics:Eigenstratpca from the datatype registry for extension eigenstratpca. +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,133 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.genetics:Eset from the datatype registry for extension eset. +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,133 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.genetics:Fped from the datatype registry for extension fped. +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,133 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.genetics:Fphe from the datatype registry for extension fphe. +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,133 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.genetics:GenomeGraphs from the datatype registry for extension gg. +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,133 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.genetics:ldIndep from the datatype registry for extension ldindep. +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,133 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.genetics:MAlist from the datatype registry for extension malist. +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,133 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.genetics:Lped from the datatype registry for extension lped. +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,133 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.genetics:Pbed from the datatype registry for extension pbed. +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,134 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.genetics:Pheno from the datatype registry for extension pheno. +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,134 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.genetics:Pphe from the datatype registry for extension pphe. +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,134 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.genetics:RexpBase from the datatype registry for extension rexpbase. +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,134 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.genetics:Rgenetics from the datatype registry for extension rgenetics. +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,134 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.genetics:Snptest from the datatype registry for extension snptest. +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,134 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.genetics:SNPMatrix from the datatype registry for extension snpmatrix. +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,134 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:ExcelXls from the datatype registry for extension xls. +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,134 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.text:Ipynb from the datatype registry for extension ipynb. +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,134 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.text:Json from the datatype registry for extension json. +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,134 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.text:ExpressionJson from the datatype registry for extension expression.json. +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,135 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.graph:Xgmml from the datatype registry for extension xgmml. +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,135 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.graph:Sif from the datatype registry for extension sif. +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,136 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.triples:Triples from the datatype registry for extension triples. +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,136 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.triples:HDT from the datatype registry for extension hdt. +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,136 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.triples:NTriples from the datatype registry for extension nt. +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,136 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.triples:N3 from the datatype registry for extension n3. +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,136 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.triples:Turtle from the datatype registry for extension ttl. +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,137 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.triples:Rdf from the datatype registry for extension rdf. +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,137 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.triples:Jsonld from the datatype registry for extension jsonld. +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,137 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:ExcelXls from the datatype registry for extension excel.xls. +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,137 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:Xlsx from the datatype registry for extension xlsx. +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,137 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:Binary from the datatype registry for extension docx. +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,137 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension btwisted. +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,137 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension cai. +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,137 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension cat_db. +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,137 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension charge. +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,138 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension checktrans. +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,138 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension chips. +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,138 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension codcmp. +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,138 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension coderet. +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,138 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension compseq. +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,138 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension cpgplot. +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,138 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension cpgreport. +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,138 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension cusp. +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,138 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension cut. +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,138 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension dan. +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,138 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension digest. +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,139 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension dreg. +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,139 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension einverted. +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,139 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension epestfind. +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,139 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension equicktandem. +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,139 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension est2genome. +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,139 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension etandem. +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,139 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension freak. +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,139 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension fuzznuc. +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,139 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension fuzzpro. +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,139 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension fuzztran. +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,139 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension garnier. +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,140 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension geecee. +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,140 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension helixturnhelix. +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,140 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension hmoment. +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,140 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension isochore. +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,140 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension match. +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,140 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension nametable. +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,140 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension needle. +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,140 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension newcpgreport. +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,140 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension newcpgseek. +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,140 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension noreturn. +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,140 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension palindrome. +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,141 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension pepcoil. +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,141 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension pepinfo. +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,141 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension pepstats. +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,141 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension polydot. +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,141 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension preg. +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,141 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension prettyseq. +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,141 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension primersearch. +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,141 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension showfeat. +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,141 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension showorf. +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,141 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension sixpack. +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,141 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension strider. +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,142 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension supermatcher. +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,142 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension syco. +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,142 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension textsearch. +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,142 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension vectorstrip. +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,142 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension wobble. +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,142 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension wordcount. +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,142 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension dbmotif. +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,142 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension diffseq. +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,142 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension excel. +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,142 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension feattable. +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,142 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension motif. +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,143 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension regions. +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,143 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension seqtable. +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,143 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension simple. +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,143 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension table. +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,143 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension tagseq. +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,143 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension acedb. +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,143 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension clustal. +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,143 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension codata. +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,143 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension embl. +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,143 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension fitch. +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,143 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension gcg. +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,144 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.sequence:Genbank from the datatype registry for extension genbank. +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,144 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension hennig86. +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,144 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension ig. +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,144 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension jackknifer. +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,144 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension jackknifernon. +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,144 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension mega. +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,144 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension meganon. +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,144 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension ncbi. +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,144 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension nexus. +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,144 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension nexusnon. +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,145 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.phylip:Phylip from the datatype registry for extension phylip. +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,145 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension phylipnon. +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,145 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension pir. +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,145 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension staden. +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,145 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension swiss. +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,146 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.msa:Msf from the datatype registry for extension msf. +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,146 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension markx0. +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,147 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension markx1. +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,147 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension markx10. +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,147 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension markx2. +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,147 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension markx3. +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,147 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension pair. +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,147 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension score. +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,147 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension srs. +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,147 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension srspair. +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,148 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.annotation:SnapHmm from the datatype registry for extension snaphmm. +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,148 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.annotation:Augustus from the datatype registry for extension augustus. +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,148 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:ICM from the datatype registry for extension icm. +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,148 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.msa:InfernalCM from the datatype registry for extension cm. +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,148 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.msa:Hmmer2 from the datatype registry for extension hmm2. +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,148 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.msa:Hmmer3 from the datatype registry for extension hmm3. +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,148 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.msa:Stockholm_1_0 from the datatype registry for extension stockholm. +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,148 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.msa:MauveXmfa from the datatype registry for extension xmfa. +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,149 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.microarrays:Cel from the datatype registry for extension cel. +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,149 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.microarrays:Gpr from the datatype registry for extension gpr. +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,149 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.microarrays:Gal from the datatype registry for extension gal. +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,149 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:RDS from the datatype registry for extension rds. +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,149 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:RDS from the datatype registry for extension phyloseq. +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,149 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:RData from the datatype registry for extension rdata. +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,149 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:RData from the datatype registry for extension rdata.sce. +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,149 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:RData from the datatype registry for extension rdata.xcms.raw. +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,150 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:RData from the datatype registry for extension rdata.msnbase.raw. +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,150 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:RData from the datatype registry for extension rdata.xcms.findchrompeaks. +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,150 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:RData from the datatype registry for extension rdata.xcms.group. +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,150 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:RData from the datatype registry for extension rdata.xcms.retcor. +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,150 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:RData from the datatype registry for extension rdata.xcms.fillpeaks. +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,150 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:RData from the datatype registry for extension rdata.camera.positive. +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,150 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:RData from the datatype registry for extension rdata.camera.negative. +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,150 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:RData from the datatype registry for extension rdata.camera.quick. +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,151 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.hdf5:HDF5SummarizedExperiment from the datatype registry for extension rdata.se. +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,151 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:Binary from the datatype registry for extension rdock_as. +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,151 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:OxliCountGraph from the datatype registry for extension oxlicg. +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,151 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:OxliNodeGraph from the datatype registry for extension oxling. +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,151 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:OxliTagSet from the datatype registry for extension oxlits. +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,151 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:OxliStopTags from the datatype registry for extension oxlist. +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,151 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:OxliSubset from the datatype registry for extension oxliss. +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,151 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:OxliGraphLabels from the datatype registry for extension oxligl. +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,152 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.constructive_solid_geometry:STL from the datatype registry for extension stl. +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,153 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.constructive_solid_geometry:PlyAscii from the datatype registry for extension plyascii. +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,153 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.constructive_solid_geometry:PlyBinary from the datatype registry for extension plybinary. +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,153 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.constructive_solid_geometry:VtkAscii from the datatype registry for extension vtkascii. +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,153 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.constructive_solid_geometry:VtkBinary from the datatype registry for extension vtkbinary. +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,153 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.text:Biom1 from the datatype registry for extension biom1. +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,153 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:Biom2 from the datatype registry for extension biom2. +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,153 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:MashSketch from the datatype registry for extension msh. +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,153 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.interval:ScIdx from the datatype registry for extension scidx. +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,155 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.molecules:SMILES from the datatype registry for extension smi. +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,155 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.molecules:SDF from the datatype registry for extension sdf. +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,155 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.molecules:InChI from the datatype registry for extension inchi. +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,155 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.molecules:MOL from the datatype registry for extension mol. +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,156 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.molecules:MOL2 from the datatype registry for extension mol2. +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,156 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.molecules:CML from the datatype registry for extension cml. +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,156 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.molecules:FPS from the datatype registry for extension fps. +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,156 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.molecules:OBFS from the datatype registry for extension obfs. +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,156 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.molecules:DRF from the datatype registry for extension drf. +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,156 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.molecules:PHAR from the datatype registry for extension phar. +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,156 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.molecules:PDB from the datatype registry for extension pdb. +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,156 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.molecules:PDBQT from the datatype registry for extension pdbqt. +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,156 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.molecules:PQR from the datatype registry for extension pqr. +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,156 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.molecules:Cell from the datatype registry for extension cell. +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,156 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.molecules:CIF from the datatype registry for extension cif. +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,157 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.molecules:XYZ from the datatype registry for extension xyz. +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,157 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.molecules:ExtendedXYZ from the datatype registry for extension extxyz. +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,157 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:Trr from the datatype registry for extension trr. +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,157 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:Dcd from the datatype registry for extension dcd. +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,157 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension top. +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,157 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension prmtop. +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,157 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension itp. +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,157 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension mdp. +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,157 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension ndx. +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,157 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension xvg. +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,157 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:Xtc from the datatype registry for extension xtc. +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,158 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:Cpt from the datatype registry for extension cpt. +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,158 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:Edr from the datatype registry for extension edr. +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,158 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:Binary from the datatype registry for extension tpr. +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,158 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.molecules:GRO from the datatype registry for extension gro. +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,158 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension inpcrd. +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,158 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:Vel from the datatype registry for extension vel. +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,158 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.molecules:grd from the datatype registry for extension grd. +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,158 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.molecules:grdtgz from the datatype registry for extension grd.tgz. +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,158 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.mothur:Otu from the datatype registry for extension mothur.otu. +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,158 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.mothur:Otu from the datatype registry for extension mothur.list. +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,159 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.mothur:Sabund from the datatype registry for extension mothur.sabund. +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,159 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.mothur:Sabund from the datatype registry for extension mothur.rabund. +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,159 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.mothur:GroupAbund from the datatype registry for extension mothur.shared. +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,159 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.mothur:GroupAbund from the datatype registry for extension mothur.relabund. +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,159 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.mothur:Names from the datatype registry for extension mothur.names. +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,159 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.mothur:Group from the datatype registry for extension mothur.design. +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,159 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.mothur:Summary from the datatype registry for extension mothur.summary. +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,159 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.mothur:Group from the datatype registry for extension mothur.groups. +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,159 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.mothur:Oligos from the datatype registry for extension mothur.oligos. +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,159 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.sequence:Fasta from the datatype registry for extension mothur.align. +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,159 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.mothur:AccNos from the datatype registry for extension mothur.accnos. +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,160 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.mothur:AccNos from the datatype registry for extension mothur.otulabels. +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,160 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.tabular:Tabular from the datatype registry for extension mothur.otu.corr. +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,160 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.mothur:SecondaryStructureMap from the datatype registry for extension mothur.map. +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,160 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.mothur:AlignCheck from the datatype registry for extension mothur.align.check. +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,160 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.mothur:AlignReport from the datatype registry for extension mothur.align.report. +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,160 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.mothur:LaneMask from the datatype registry for extension mothur.filter. +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,160 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.mothur:DistanceMatrix from the datatype registry for extension mothur.dist. +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,160 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension mothur.tre. +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,160 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.mothur:PairwiseDistanceMatrix from the datatype registry for extension mothur.pair.dist. +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,160 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.mothur:SquareDistanceMatrix from the datatype registry for extension mothur.square.dist. +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,160 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.mothur:LowerTriangleDistanceMatrix from the datatype registry for extension mothur.lower.dist. +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,160 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.mothur:RefTaxonomy from the datatype registry for extension mothur.ref.taxonomy. +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,161 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.mothur:RefTaxonomy from the datatype registry for extension mothur.seq.taxonomy. +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,161 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.mothur:RefTaxonomy from the datatype registry for extension mothur.rdp.taxonomy. +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,161 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.mothur:ConsensusTaxonomy from the datatype registry for extension mothur.cons.taxonomy. +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,161 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.mothur:TaxonomySummary from the datatype registry for extension mothur.tax.summary. +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,161 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.mothur:Frequency from the datatype registry for extension mothur.freq. +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,161 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.mothur:Quantile from the datatype registry for extension mothur.quan. +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,161 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.mothur:Quantile from the datatype registry for extension mothur.filtered.quan. +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,161 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.mothur:Quantile from the datatype registry for extension mothur.masked.quan. +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,161 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.mothur:Quantile from the datatype registry for extension mothur.filtered.masked.quan. +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,161 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.mothur:Axes from the datatype registry for extension mothur.axes. +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,162 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.mothur:SffFlow from the datatype registry for extension mothur.sff.flow. +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,162 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.mothur:CountTable from the datatype registry for extension mothur.count_table. +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,162 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.neo4j:Neo4jDB from the datatype registry for extension neostore. +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,162 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.neo4j:Neo4jDBzip from the datatype registry for extension neostore.zip. +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,162 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.tracks:UCSCTrackHub from the datatype registry for extension trackhub. +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,163 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.blast:BlastXml from the datatype registry for extension blastxml. +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,163 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.blast:BlastNucDb from the datatype registry for extension blastdbn. +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,163 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.blast:BlastProtDb from the datatype registry for extension blastdbp. +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,164 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.blast:BlastDomainDb from the datatype registry for extension blastdbd. +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,164 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.blast:LastDb from the datatype registry for extension lastdb. +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,164 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.blast:BlastNucDb5 from the datatype registry for extension blastdbn5. +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,164 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.blast:BlastProtDb5 from the datatype registry for extension blastdbp5. +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,164 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.blast:BlastDomainDb5 from the datatype registry for extension blastdbd5. +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,164 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:GenericAsn1 from the datatype registry for extension maskinfo-asn1. +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,164 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:GenericAsn1Binary from the datatype registry for extension maskinfo-asn1-binary. +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,164 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:GenericAsn1 from the datatype registry for extension pssm-asn1. +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,165 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.plant_tribes:PlantTribesKsComponents from the datatype registry for extension ptkscmp. +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,165 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.plant_tribes:Smat from the datatype registry for extension smat. +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,165 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.genetics:GenotypeMatrix from the datatype registry for extension alohomora_gts. +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,165 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.tabular:Tabular from the datatype registry for extension alohomora_map. +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,165 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.tabular:Tabular from the datatype registry for extension alohomora_maf. +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,165 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.tabular:Tabular from the datatype registry for extension alohomora_ped. +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,165 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.tabular:Tabular from the datatype registry for extension linkage_pedin. +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,166 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.genetics:DataIn from the datatype registry for extension linkage_datain. +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,166 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.genetics:MarkerMap from the datatype registry for extension linkage_map. +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,166 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.tabular:Tabular from the datatype registry for extension allegro_ihaplo. +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,166 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.tabular:Tabular from the datatype registry for extension allegro_descent. +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,166 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.genetics:AllegroLOD from the datatype registry for extension allegro_fparam. +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,166 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.genetics:IdeasPre from the datatype registry for extension ideaspre. +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,166 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.xml:Sbml from the datatype registry for extension sbml. +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,167 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.spaln:SpalnNuclDb from the datatype registry for extension spalndbnp. +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,168 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.spaln:SpalnProtDb from the datatype registry for extension spalndba. +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,168 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:RDS from the datatype registry for extension dada2_dada. +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,168 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:RDS from the datatype registry for extension dada2_errorrates. +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,168 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:RDS from the datatype registry for extension dada2_mergepairs. +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,168 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.tabular:Tabular from the datatype registry for extension dada2_sequencetable. +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,168 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.tabular:Tabular from the datatype registry for extension dada2_uniques. +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,168 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:RDS from the datatype registry for extension ampvis2. +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,169 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:Binary from the datatype registry for extension ckpt. +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,169 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:Binary from the datatype registry for extension tgz. +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,171 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.media:Wav from the datatype registry for extension wav. +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,171 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.media:Mp3 from the datatype registry for extension mp3. +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,172 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.media:Mkv from the datatype registry for extension mkv. +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,172 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.media:Mp4 from the datatype registry for extension mp4. +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,172 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.media:Flv from the datatype registry for extension flv. +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,172 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.media:Mpg from the datatype registry for extension mpg. +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,172 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.speech:TextGrid from the datatype registry for extension textgrid. +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,172 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.speech:BPF from the datatype registry for extension par. +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,172 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.tabular:Tabular from the datatype registry for extension ffindex. +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,172 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:Data from the datatype registry for extension ffdata. +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,173 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:Pretext from the datatype registry for extension pretext. +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,173 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.text:Html from the datatype registry for extension immuneml_receptors.html. +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,173 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:HexrdMaterials from the datatype registry for extension hexrd.materials.h5. +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,173 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:Npz from the datatype registry for extension npz. +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,173 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:HexrdImagesNpz from the datatype registry for extension hexrd.images.npz. +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,173 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:HexrdEtaOmeNpz from the datatype registry for extension hexrd.eta_ome.npz. +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,173 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:Npz from the datatype registry for extension hexrd.scored_orientations.npz. +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,173 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.tabular:Tabular from the datatype registry for extension hexrd.accepted_orientations. +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,173 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.text:Yaml from the datatype registry for extension hexrd.yml. +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,173 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.constructive_solid_geometry:NeperTess from the datatype registry for extension neper.tess. +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,174 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.constructive_solid_geometry:NeperTesr from the datatype registry for extension neper.tesr. +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,174 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.constructive_solid_geometry:NeperPoints from the datatype registry for extension neper.points. +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,174 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.constructive_solid_geometry:NeperPointsTabular from the datatype registry for extension neper.points.tsv. +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,174 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.constructive_solid_geometry:NeperMultiScaleCell from the datatype registry for extension neper.mscell. +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,174 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.constructive_solid_geometry:GmshMsh from the datatype registry for extension gmsh.msh. +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,174 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.constructive_solid_geometry:GmshGeo from the datatype registry for extension gmsh.geo. +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,174 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.constructive_solid_geometry:ZsetGeof from the datatype registry for extension zset.geof. +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,174 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:Binary from the datatype registry for extension stl. +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,174 [pN:main,p:78505,tN:MainThread] Overriding conflicting datatype with extension 'stl', using datatype from /scratch/rico/galaxy/lib/galaxy/config/sample/datatypes_conf.xml.sample. +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,174 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.text:Text from the datatype registry for extension pov. +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,174 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.text:PithyaResult from the datatype registry for extension pithya.result. +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,174 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.text:PithyaProperty from the datatype registry for extension pithya.property. +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,174 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.text:PithyaModel from the datatype registry for extension pithya.model. +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,175 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.text:BCSLts from the datatype registry for extension bcsl.ts. +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,175 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.text:BCSLmodel from the datatype registry for extension bcsl.model. +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,175 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.text:StormSample from the datatype registry for extension storm.sample. +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,175 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.text:StormCheck from the datatype registry for extension storm.check. +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,175 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.text:CTLresult from the datatype registry for extension ctl.result. +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,175 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.text:Castep from the datatype registry for extension castep. +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,175 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.text:Param from the datatype registry for extension param. +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,175 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.text:FormattedDensity from the datatype registry for extension den_fmt. +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,176 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.larch:AthenaProject from the datatype registry for extension prj. +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,176 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.larch:FEFFInput from the datatype registry for extension inp. +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,176 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.tabular:CSV from the datatype registry for extension sp. +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,176 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.tabular:CSV from the datatype registry for extension gds. +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,176 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.tabular:CSV from the datatype registry for extension feff. +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,176 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension feffit. +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,176 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:Binary from the datatype registry for extension bil. +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,176 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension hdr. +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,177 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.gis:Shapefile from the datatype registry for extension shp. +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,177 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:FITS from the datatype registry for extension fits. +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,177 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.chain:Chain from the datatype registry for extension chain. +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,177 [pN:main,p:78505,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.plant_tribes:PlantTribesKsComponents' +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,178 [pN:main,p:78505,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.plant_tribes:Smat' +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,178 [pN:main,p:78505,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.mothur:Sabund' +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,178 [pN:main,p:78505,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.mothur:Otu' +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,178 [pN:main,p:78505,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.mothur:GroupAbund' +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,178 [pN:main,p:78505,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.mothur:SecondaryStructureMap' +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,178 [pN:main,p:78505,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.mothur:LowerTriangleDistanceMatrix' +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,178 [pN:main,p:78505,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.mothur:SquareDistanceMatrix' +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,178 [pN:main,p:78505,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.mothur:PairwiseDistanceMatrix' +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,178 [pN:main,p:78505,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.mothur:Oligos' +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,178 [pN:main,p:78505,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.mothur:Quantile' +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,178 [pN:main,p:78505,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.mothur:Frequency' +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,178 [pN:main,p:78505,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.mothur:LaneMask' +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,178 [pN:main,p:78505,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.mothur:RefTaxonomy' +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,178 [pN:main,p:78505,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.mothur:Axes' +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,178 [pN:main,p:78505,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.constructive_solid_geometry:PlyAscii' +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,178 [pN:main,p:78505,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.constructive_solid_geometry:PlyBinary' +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,178 [pN:main,p:78505,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.constructive_solid_geometry:VtkAscii' +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,178 [pN:main,p:78505,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.constructive_solid_geometry:VtkBinary' +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,178 [pN:main,p:78505,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.constructive_solid_geometry:NeperTess' +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,178 [pN:main,p:78505,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.constructive_solid_geometry:NeperTesr' +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,178 [pN:main,p:78505,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.constructive_solid_geometry:GmshMsh' +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,178 [pN:main,p:78505,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.goldenpath:GoldenPath' +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,179 [pN:main,p:78505,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.interval:ScIdx' +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,179 [pN:main,p:78505,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.tabular:Vcf' +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,179 [pN:main,p:78505,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.binary:JP2' +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,179 [pN:main,p:78505,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.binary:TwoBit' +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,179 [pN:main,p:78505,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.binary:GeminiSQLite' +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,179 [pN:main,p:78505,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.binary:SQmass' +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,179 [pN:main,p:78505,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.binary:MzSQlite' +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,179 [pN:main,p:78505,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.binary:OSW' +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,179 [pN:main,p:78505,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.binary:PQP' +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,179 [pN:main,p:78505,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.binary:IdpDB' +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,179 [pN:main,p:78505,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.binary:ElibSQlite' +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,179 [pN:main,p:78505,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.binary:DlibSQlite' +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,179 [pN:main,p:78505,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.binary:BlibSQlite' +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,179 [pN:main,p:78505,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.binary:ChiraSQLite' +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,179 [pN:main,p:78505,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.binary:CuffDiffSQlite' +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,179 [pN:main,p:78505,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.binary:GAFASQLite' +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,179 [pN:main,p:78505,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.binary:NcbiTaxonomySQlite' +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,179 [pN:main,p:78505,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.binary:SQlite' +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,179 [pN:main,p:78505,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.binary:H5MLM' +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,179 [pN:main,p:78505,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.binary:Cool' +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,179 [pN:main,p:78505,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.binary:MCool' +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,179 [pN:main,p:78505,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.binary:Loom' +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,179 [pN:main,p:78505,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.binary:Anndata' +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,179 [pN:main,p:78505,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.binary:Biom2' +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,180 [pN:main,p:78505,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.binary:HexrdMaterials' +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,180 [pN:main,p:78505,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.binary:H5' +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,180 [pN:main,p:78505,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.binary:Grib' +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,180 [pN:main,p:78505,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.binary:HexrdImagesNpz' +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,180 [pN:main,p:78505,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.binary:HexrdEtaOmeNpz' +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,180 [pN:main,p:78505,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.binary:Npz' +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,180 [pN:main,p:78505,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.binary:Bam' +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,180 [pN:main,p:78505,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.binary:BamQuerynameSorted' +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,180 [pN:main,p:78505,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.binary:BamNative' +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,180 [pN:main,p:78505,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.binary:CRAM' +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,180 [pN:main,p:78505,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.binary:Sff' +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,180 [pN:main,p:78505,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.binary:Sra' +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,180 [pN:main,p:78505,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.binary:NetCDF' +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,180 [pN:main,p:78505,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.binary:DAA' +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,180 [pN:main,p:78505,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.binary:RMA6' +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,180 [pN:main,p:78505,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.binary:DMND' +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,180 [pN:main,p:78505,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.binary:Parquet' +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,180 [pN:main,p:78505,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.binary:BafTar' +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,180 [pN:main,p:78505,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.binary:TdfTar' +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,180 [pN:main,p:78505,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.binary:MassHunterTar' +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,180 [pN:main,p:78505,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.binary:MassLynxTar' +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,180 [pN:main,p:78505,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.binary:YepTar' +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,180 [pN:main,p:78505,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.binary:WiffTar' +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,180 [pN:main,p:78505,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.binary:Fast5ArchiveGz' +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,181 [pN:main,p:78505,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.binary:Fast5ArchiveBz2' +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,181 [pN:main,p:78505,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.binary:Fast5Archive' +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,181 [pN:main,p:78505,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.binary:Meryldb' +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,181 [pN:main,p:78505,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.binary:Bref3' +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,181 [pN:main,p:78505,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.binary:PostgresqlArchive' +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,181 [pN:main,p:78505,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.binary:ICM' +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,181 [pN:main,p:78505,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.binary:Idat' +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,181 [pN:main,p:78505,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.binary:Trr' +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,181 [pN:main,p:78505,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.binary:Dcd' +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,181 [pN:main,p:78505,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.binary:Xtc' +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,181 [pN:main,p:78505,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.binary:Cpt' +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,181 [pN:main,p:78505,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.binary:Edr' +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,181 [pN:main,p:78505,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.binary:Vel' +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,181 [pN:main,p:78505,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.binary:Xlsx' +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,181 [pN:main,p:78505,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.qiime2:QIIME2Metadata' +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,181 [pN:main,p:78505,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.qiime2:QIIME2Artifact' +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,181 [pN:main,p:78505,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.qiime2:QIIME2Visualization' +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,181 [pN:main,p:78505,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.binary:CompressedZipArchive' +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,181 [pN:main,p:78505,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.binary:Pretext' +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,181 [pN:main,p:78505,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.annotation:Augustus' +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,181 [pN:main,p:78505,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.xml:Owl' +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,182 [pN:main,p:78505,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.chain:Chain' +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,182 [pN:main,p:78505,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.triples:Rdf' +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,182 [pN:main,p:78505,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.blast:BlastXml' +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,182 [pN:main,p:78505,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.images:Gifti' +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,182 [pN:main,p:78505,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.xml:Phyloxml' +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,182 [pN:main,p:78505,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.xml:Dzi' +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,182 [pN:main,p:78505,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.xml:Sbml' +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,182 [pN:main,p:78505,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.proteomics:Dta2d' +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,182 [pN:main,p:78505,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.proteomics:Edta' +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,182 [pN:main,p:78505,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.proteomics:ConsensusXML' +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,182 [pN:main,p:78505,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.proteomics:IdXML' +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,182 [pN:main,p:78505,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.proteomics:FeatureXML' +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,182 [pN:main,p:78505,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.proteomics:MascotXML' +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,182 [pN:main,p:78505,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.proteomics:Mgf' +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,182 [pN:main,p:78505,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.proteomics:Ms2' +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,182 [pN:main,p:78505,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.proteomics:Msp' +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,182 [pN:main,p:78505,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.proteomics:MzData' +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,182 [pN:main,p:78505,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.proteomics:MzIdentML' +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,182 [pN:main,p:78505,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.proteomics:MzML' +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,182 [pN:main,p:78505,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.proteomics:MzQuantML' +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,182 [pN:main,p:78505,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.proteomics:MzTab' +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,183 [pN:main,p:78505,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.proteomics:MzTab2' +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,183 [pN:main,p:78505,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.proteomics:ParamXml' +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,183 [pN:main,p:78505,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.proteomics:MzXML' +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,183 [pN:main,p:78505,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.proteomics:NmrML' +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,183 [pN:main,p:78505,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.proteomics:Kroenik' +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,183 [pN:main,p:78505,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.proteomics:PepList' +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,183 [pN:main,p:78505,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.proteomics:PSMS' +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,183 [pN:main,p:78505,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.proteomics:PepXml' +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,183 [pN:main,p:78505,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.proteomics:ProtXML' +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,183 [pN:main,p:78505,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.proteomics:SPLib' +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,183 [pN:main,p:78505,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.proteomics:TandemXML' +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,183 [pN:main,p:78505,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.proteomics:ThermoRAW' +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,183 [pN:main,p:78505,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.proteomics:TraML' +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,183 [pN:main,p:78505,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.proteomics:TrafoXML' +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,183 [pN:main,p:78505,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.proteomics:UniProtXML' +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,183 [pN:main,p:78505,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.proteomics:XquestXML' +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,183 [pN:main,p:78505,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.proteomics:XquestSpecXML' +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,183 [pN:main,p:78505,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.proteomics:QCML' +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,183 [pN:main,p:78505,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.proteomics:Wiff' +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,183 [pN:main,p:78505,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.proteomics:PEFF' +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,184 [pN:main,p:78505,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.molecules:CML' +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,184 [pN:main,p:78505,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.xml:GenericXml' +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,184 [pN:main,p:78505,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.triples:HDT' +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,184 [pN:main,p:78505,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.triples:Turtle' +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,184 [pN:main,p:78505,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.triples:NTriples' +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,184 [pN:main,p:78505,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.triples:Jsonld' +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,184 [pN:main,p:78505,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.sequence:Maf' +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,184 [pN:main,p:78505,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.sequence:Lav' +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,184 [pN:main,p:78505,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.sequence:MemePsp' +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,184 [pN:main,p:78505,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.sequence:Fastg' +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,184 [pN:main,p:78505,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.sequence:csFasta' +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,184 [pN:main,p:78505,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.qualityscore:QualityScoreSOLiD' +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,184 [pN:main,p:78505,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.qualityscore:QualityScore454' +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,184 [pN:main,p:78505,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.molecules:SDF' +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,184 [pN:main,p:78505,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.molecules:PDB' +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,184 [pN:main,p:78505,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.molecules:Cell' +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,184 [pN:main,p:78505,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.molecules:CIF' +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,184 [pN:main,p:78505,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.molecules:ExtendedXYZ' +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,184 [pN:main,p:78505,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.molecules:XYZ' +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,185 [pN:main,p:78505,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.molecules:MOL2' +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,185 [pN:main,p:78505,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.molecules:InChI' +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,185 [pN:main,p:78505,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.molecules:FPS' +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,185 [pN:main,p:78505,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.molecules:PQR' +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,185 [pN:main,p:78505,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.molecules:GRO' +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,185 [pN:main,p:78505,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.phylip:Phylip' +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,185 [pN:main,p:78505,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.sequence:Fasta' +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,185 [pN:main,p:78505,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.sequence:FastqCSSanger' +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,185 [pN:main,p:78505,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.sequence:FastqSanger' +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,185 [pN:main,p:78505,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.sequence:Fastq' +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,185 [pN:main,p:78505,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.interval:Wiggle' +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,185 [pN:main,p:78505,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.text:Html' +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,185 [pN:main,p:78505,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.images:Pdf' +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,185 [pN:main,p:78505,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.sequence:Axt' +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,185 [pN:main,p:78505,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.sequence:Genbank' +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,185 [pN:main,p:78505,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.interval:Bed' +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,185 [pN:main,p:78505,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.interval:CustomTrack' +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,186 [pN:main,p:78505,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.interval:Gtf' +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,186 [pN:main,p:78505,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.interval:Gff' +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,186 [pN:main,p:78505,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.interval:Gff3' +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,186 [pN:main,p:78505,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.tabular:Pileup' +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,186 [pN:main,p:78505,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.tabular:Psl' +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,186 [pN:main,p:78505,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.text:Paf' +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,186 [pN:main,p:78505,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.interval:Interval' +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,186 [pN:main,p:78505,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.tabular:Sam' +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,186 [pN:main,p:78505,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.data:Newick' +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,186 [pN:main,p:78505,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.data:Nexus' +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,186 [pN:main,p:78505,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.text:IQTree' +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,186 [pN:main,p:78505,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.text:Obo' +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,186 [pN:main,p:78505,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.text:Arff' +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,186 [pN:main,p:78505,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.text:Ipynb' +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,186 [pN:main,p:78505,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.text:Biom1' +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,186 [pN:main,p:78505,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.text:ImgtJson' +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,187 [pN:main,p:78505,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.text:GeoJson' +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,187 [pN:main,p:78505,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.text:PithyaResult' +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,187 [pN:main,p:78505,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.text:BCSLts' +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,187 [pN:main,p:78505,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.text:Json' +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,187 [pN:main,p:78505,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.genetics:GenotypeMatrix' +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,187 [pN:main,p:78505,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.genetics:DataIn' +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,187 [pN:main,p:78505,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.genetics:MarkerMap' +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,187 [pN:main,p:78505,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.genetics:AllegroLOD' +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,187 [pN:main,p:78505,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.sequence:RNADotPlotMatrix' +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,187 [pN:main,p:78505,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.sequence:DotBracket' +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,187 [pN:main,p:78505,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.tabular:CMAP' +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,187 [pN:main,p:78505,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.tabular:ConnectivityTable' +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,187 [pN:main,p:78505,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.tabular:CSV' +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,187 [pN:main,p:78505,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.metacyto:mSummary' +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,187 [pN:main,p:78505,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.metacyto:mStats' +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,187 [pN:main,p:78505,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.tabular:TSV' +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,188 [pN:main,p:78505,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.tabular:MatrixMarket' +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,188 [pN:main,p:78505,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.msa:Hmmer2' +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,188 [pN:main,p:78505,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.msa:Hmmer3' +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,188 [pN:main,p:78505,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.msa:Stockholm_1_0' +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,188 [pN:main,p:78505,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.msa:MauveXmfa' +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,188 [pN:main,p:78505,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.msa:InfernalCM' +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,188 [pN:main,p:78505,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.annotation:SnapHmm' +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,188 [pN:main,p:78505,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.microarrays:Cel' +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,188 [pN:main,p:78505,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.microarrays:Gpr' +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,188 [pN:main,p:78505,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.microarrays:Gal' +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,188 [pN:main,p:78505,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.binary:RData' +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,188 [pN:main,p:78505,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.binary:RDS' +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,188 [pN:main,p:78505,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.images:Mrc2014' +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,188 [pN:main,p:78505,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.images:Jpg' +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,188 [pN:main,p:78505,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.images:Png' +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,188 [pN:main,p:78505,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.images:OMETiff' +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,189 [pN:main,p:78505,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.images:Tiff' +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,189 [pN:main,p:78505,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.images:Bmp' +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,189 [pN:main,p:78505,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.images:Gif' +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,189 [pN:main,p:78505,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.images:Im' +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,189 [pN:main,p:78505,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.images:Pcd' +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,189 [pN:main,p:78505,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.images:Pcx' +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,189 [pN:main,p:78505,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.images:Ppm' +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,189 [pN:main,p:78505,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.images:Psd' +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,189 [pN:main,p:78505,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.images:Xbm' +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,189 [pN:main,p:78505,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.images:Rgb' +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,189 [pN:main,p:78505,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.images:Pbm' +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,189 [pN:main,p:78505,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.images:Pgm' +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,189 [pN:main,p:78505,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.images:Xpm' +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,189 [pN:main,p:78505,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.images:Eps' +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,189 [pN:main,p:78505,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.images:Rast' +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,189 [pN:main,p:78505,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.images:Tck' +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,190 [pN:main,p:78505,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.images:Trk' +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,190 [pN:main,p:78505,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.images:Nifti1' +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,190 [pN:main,p:78505,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.images:Nifti2' +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,190 [pN:main,p:78505,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.images:Star' +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,190 [pN:main,p:78505,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.media:Wav' +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,190 [pN:main,p:78505,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.media:Mkv' +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,190 [pN:main,p:78505,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.media:Mp3' +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,190 [pN:main,p:78505,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.media:Mp4' +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,190 [pN:main,p:78505,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.media:Flv' +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,190 [pN:main,p:78505,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.media:Mpg' +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,190 [pN:main,p:78505,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.speech:TextGrid' +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,190 [pN:main,p:78505,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.speech:BPF' +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,190 [pN:main,p:78505,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.larch:FEFFInput' +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,190 [pN:main,p:78505,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.larch:AthenaProject' +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,190 [pN:main,p:78505,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.text:Castep' +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,191 [pN:main,p:78505,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.text:CTLresult' +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,191 [pN:main,p:78505,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.text:FormattedDensity' +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,191 [pN:main,p:78505,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.text:Param' +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,191 [pN:main,p:78505,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.text:Yaml' +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,191 [pN:main,p:78505,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.binary:OxliCountGraph' +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,191 [pN:main,p:78505,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.binary:OxliNodeGraph' +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,191 [pN:main,p:78505,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.binary:OxliTagSet' +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,191 [pN:main,p:78505,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.binary:OxliStopTags' +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,191 [pN:main,p:78505,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.binary:OxliSubset' +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,191 [pN:main,p:78505,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.binary:OxliGraphLabels' +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,191 [pN:main,p:78505,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.binary:FITS' +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,191 [pN:main,p:78505,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.neo4j:Neo4jDBzip' +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,191 [pN:main,p:78505,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.text:PithyaProperty' +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,191 [pN:main,p:78505,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.text:PithyaModel' +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,191 [pN:main,p:78505,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.text:BCSLmodel' +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,192 [pN:main,p:78505,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.text:StormSample' +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,192 [pN:main,p:78505,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.text:StormCheck' +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,196 [pN:main,p:78505,tN:MainThread] Build site file [tool-data/shared/ucsc/ucsc_build_sites.txt] not found using sample [tool-data/shared/ucsc/ucsc_build_sites.txt.sample]. +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,196 [pN:main,p:78505,tN:MainThread] Loaded build site 'ucsc': tool-data/shared/ucsc/ucsc_build_sites.txt.sample with display sites: ['main', 'test', 'archaea', 'ucla'] +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,197 [pN:main,p:78505,tN:MainThread] Loaded build site 'gbrowse': tool-data/shared/gbrowse/gbrowse_build_sites.txt with display sites: ['modencode', 'sgd_yeast', 'tair', 'wormbase', 'wormbase_ws120', 'wormbase_ws140', 'wormbase_ws170', 'wormbase_ws180', 'wormbase_ws190', 'wormbase_ws200', 'wormbase_ws204', 'wormbase_ws210', 'wormbase_ws220', 'wormbase_ws225'] +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,197 [pN:main,p:78505,tN:MainThread] Loaded build site 'ensembl': tool-data/shared/ensembl/ensembl_sites.txt +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,197 [pN:main,p:78505,tN:MainThread] Loaded build site 'ensembl_data_url': tool-data/shared/ensembl/ensembl_sites_data_URL.txt +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,197 [pN:main,p:78505,tN:MainThread] Build site file [tool-data/shared/igv/igv_build_sites.txt] not found using sample [tool-data/shared/igv/igv_build_sites.txt.sample]. +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,197 [pN:main,p:78505,tN:MainThread] Loaded build site 'igv': tool-data/shared/igv/igv_build_sites.txt.sample +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,197 [pN:main,p:78505,tN:MainThread] Build site file [tool-data/shared/rviewer/rviewer_build_sites.txt] not found using sample [tool-data/shared/rviewer/rviewer_build_sites.txt.sample]. +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,197 [pN:main,p:78505,tN:MainThread] Loaded build site 'rviewer': tool-data/shared/rviewer/rviewer_build_sites.txt.sample +galaxy.util.tool_shed.tool_shed_registry DEBUG 2024-02-23 14:21:35,198 [pN:main,p:78505,tN:MainThread] Loading references to tool sheds from /tmp/tmpqrlh6ih1/tool_sheds_conf.xml +galaxy.util.tool_shed.tool_shed_registry DEBUG 2024-02-23 14:21:35,198 [pN:main,p:78505,tN:MainThread] Loaded reference to tool shed: Target Shed +galaxy.queue_worker INFO 2024-02-23 14:21:35,198 [pN:main,p:78505,tN:MainThread] Initializing main Galaxy Queue Worker on sqlalchemy+sqlite:////tmp/tmpqrlh6ih1/galaxy.sqlite?isolation_level=IMMEDIATE +galaxy.visualization.genomes ERROR 2024-02-23 14:21:35,213 [pN:main,p:78505,tN:MainThread] Error reading twobit.loc +Traceback (most recent call last): + File "/scratch/rico/galaxy/lib/galaxy/visualization/genomes.py", line 220, in reload_genomes + with open(twobit_path) as f: +FileNotFoundError: [Errno 2] No such file or directory: '/scratch/rico/galaxy/tool-data/twobit.loc' +galaxy.util WARNING 2024-02-23 14:21:35,452 [pN:main,p:78505,tN:MainThread] directory not found: /scratch/rico/galaxy/lib/galaxy/util/../../../config/plugins/activities +galaxy.tools WARNING 2024-02-23 14:21:35,452 [pN:main,p:78505,tN:MainThread] The default shed tool config file (/tmp/tmpqrlh6ih1/shed_tool_conf.xml) has been added to the tool_config_file option, if this is not the desired behavior, please set shed_tool_config_file to your primary shed-enabled tool config file +galaxy.tool_util.toolbox.base INFO 2024-02-23 14:21:35,452 [pN:main,p:78505,tN:MainThread] Parsing the tool configuration /tmp/tmpqrlh6ih1/tool_conf.xml +galaxy.tool_util.toolbox.base DEBUG 2024-02-23 14:21:35,453 [pN:main,p:78505,tN:MainThread] Tool path for tool configuration /tmp/tmpqrlh6ih1/tool_conf.xml is None +galaxy.tool_util.toolbox.base DEBUG 2024-02-23 14:21:35,462 [pN:main,p:78505,tN:MainThread] Loaded tool id: upload1, version: 1.1.7 into tool panel.. +galaxy.tool_util.toolbox.base DEBUG 2024-02-23 14:21:35,465 [pN:main,p:78505,tN:MainThread] Loaded tool id: ncbi_fcs_adaptor, version: 0.5.0+galaxy0 into tool panel.. +galaxy.tools WARNING 2024-02-23 14:21:35,465 [pN:main,p:78505,tN:MainThread] The default shed tool config file (/tmp/tmpqrlh6ih1/shed_tool_conf.xml) has been added to the tool_config_file option, if this is not the desired behavior, please set shed_tool_config_file to your primary shed-enabled tool config file +galaxy.tool_util.toolbox.base INFO 2024-02-23 14:21:35,465 [pN:main,p:78505,tN:MainThread] Parsing the tool configuration /tmp/tmpqrlh6ih1/shed_tools_conf.xml +galaxy.tool_util.toolbox.base DEBUG 2024-02-23 14:21:35,465 [pN:main,p:78505,tN:MainThread] Tool path for shed tool configuration /tmp/tmpqrlh6ih1/shed_tools_conf.xml is /tmp/tmpqrlh6ih1/shed_tools +galaxy.tools WARNING 2024-02-23 14:21:35,465 [pN:main,p:78505,tN:MainThread] The default shed tool config file (/tmp/tmpqrlh6ih1/shed_tool_conf.xml) has been added to the tool_config_file option, if this is not the desired behavior, please set shed_tool_config_file to your primary shed-enabled tool config file +galaxy.tool_util.toolbox.base INFO 2024-02-23 14:21:35,466 [pN:main,p:78505,tN:MainThread] Parsing the tool configuration /tmp/tmpqrlh6ih1/empty_tool_conf.xml +galaxy.tool_util.toolbox.base DEBUG 2024-02-23 14:21:35,466 [pN:main,p:78505,tN:MainThread] Tool path for tool configuration /tmp/tmpqrlh6ih1/empty_tool_conf.xml is None +galaxy.tool_util.toolbox.base DEBUG 2024-02-23 14:21:35,466 [pN:main,p:78505,tN:MainThread] Reading tools from config files finished (13.784 ms) +galaxy.tool_util.toolbox.base DEBUG 2024-02-23 14:21:35,468 [pN:main,p:78505,tN:MainThread] Loaded tool id: upload1, version: 1.1.7 into tool panel.. +galaxy.tool_util.toolbox.views.edam DEBUG 2024-02-23 14:21:35,468 [pN:main,p:78505,tN:MainThread] Loading EDAM tool panel finished (1.469 ms) +galaxy.tool_util.toolbox.base DEBUG 2024-02-23 14:21:35,469 [pN:main,p:78505,tN:MainThread] Loaded tool id: upload1, version: 1.1.7 into tool panel.. +galaxy.tool_util.toolbox.views.edam DEBUG 2024-02-23 14:21:35,469 [pN:main,p:78505,tN:MainThread] Loading EDAM tool panel finished (1.281 ms) +galaxy.tool_util.toolbox.integrated_panel DEBUG 2024-02-23 14:21:35,469 [pN:main,p:78505,tN:MainThread] Writing integrated tool panel config file to '/tmp/tmpqrlh6ih1/integrated_tool_panel_conf.xml' +galaxy.util ERROR 2024-02-23 14:21:35,925 [pN:main,p:78505,tN:MainThread] Error parsing file /tmp/tmpqrlh6ih1 +Traceback (most recent call last): + File "/scratch/rico/galaxy/lib/galaxy/util/__init__.py", line 305, in parse_xml + tree = etree.parse(str(fname), parser=parser) + File "src/lxml/etree.pyx", line 3541, in lxml.etree.parse + File "src/lxml/parser.pxi", line 1879, in lxml.etree._parseDocument + File "src/lxml/parser.pxi", line 1905, in lxml.etree._parseDocumentFromURL + File "src/lxml/parser.pxi", line 1808, in lxml.etree._parseDocFromFile + File "src/lxml/parser.pxi", line 1180, in lxml.etree._BaseParser._parseDocFromFile + File "src/lxml/parser.pxi", line 618, in lxml.etree._ParserContext._handleParseResultDoc + File "src/lxml/parser.pxi", line 728, in lxml.etree._handleParseResult + File "src/lxml/parser.pxi", line 657, in lxml.etree._raiseParseError + File "/tmp/tmpqrlh6ih1", line 1 +lxml.etree.XMLSyntaxError: Document is empty, line 1, column 1 +galaxy.tools.data_manager.manager ERROR 2024-02-23 14:21:35,926 [pN:main,p:78505,tN:MainThread] There was an error parsing your Data Manager config file "/tmp/tmpqrlh6ih1": Document is empty, line 1, column 1 (tmpqrlh6ih1, line 1) +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,927 [pN:main,p:78505,tN:MainThread] Loaded display application 'ucsc_bam' for datatype 'bam', inherit=False. +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,928 [pN:main,p:78505,tN:MainThread] Loaded display application 'ensembl_bam' for datatype 'bam', inherit=False. +galaxy.datatypes.display_applications.application ERROR 2024-02-23 14:21:35,929 [pN:main,p:78505,tN:MainThread] Error loading a set of Dynamic Display Application links: Unable to find data table named "igv_broad_genomes". +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,930 [pN:main,p:78505,tN:MainThread] Loaded display application 'igv_bam' for datatype 'bam', inherit=False. +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,930 [pN:main,p:78505,tN:MainThread] Loaded display application 'igb_bam' for datatype 'bam', inherit=False. +galaxy.datatypes.display_applications.application ERROR 2024-02-23 14:21:35,930 [pN:main,p:78505,tN:MainThread] Error loading a set of Dynamic Display Application links: Unable to find data table named "bam_iobio". +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,930 [pN:main,p:78505,tN:MainThread] Loaded display application 'iobio_bam' for datatype 'bam', inherit=False. +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,931 [pN:main,p:78505,tN:MainThread] Loaded display application 'igb_bed' for datatype 'bed', inherit=False. +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,931 [pN:main,p:78505,tN:MainThread] Loaded display application 'igb_bedgraph' for datatype 'bedgraph', inherit=False. +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,932 [pN:main,p:78505,tN:MainThread] Loaded display application 'ucsc_bigbed' for datatype 'bigbed', inherit=False. +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,932 [pN:main,p:78505,tN:MainThread] Loaded display application 'igb_bb' for datatype 'bigbed', inherit=False. +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,932 [pN:main,p:78505,tN:MainThread] Loaded display application 'ucsc_bigwig' for datatype 'bigwig', inherit=False. +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,933 [pN:main,p:78505,tN:MainThread] Loaded display application 'igb_bigwig' for datatype 'bigwig', inherit=False. +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,933 [pN:main,p:78505,tN:MainThread] Loaded display application 'igv_bigwig' for datatype 'bigwig', inherit=False. +galaxy.datatypes.display_applications.application ERROR 2024-02-23 14:21:35,933 [pN:main,p:78505,tN:MainThread] Error loading a set of Dynamic Display Application links: Unable to find data table named "intermine_simple_display". +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,933 [pN:main,p:78505,tN:MainThread] Loaded display application 'intermine_simple' for datatype 'intermine_tabular', inherit=False. +galaxy.datatypes.display_applications.application ERROR 2024-02-23 14:21:35,934 [pN:main,p:78505,tN:MainThread] Error loading a set of Dynamic Display Application links: Unable to find data table named "igv_broad_genomes". +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,934 [pN:main,p:78505,tN:MainThread] Loaded display application 'igv_fasta' for datatype 'fasta', inherit=True. +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,935 [pN:main,p:78505,tN:MainThread] Loaded display application 'ensembl_gff' for datatype 'gff', inherit=True. +galaxy.datatypes.display_applications.application ERROR 2024-02-23 14:21:35,936 [pN:main,p:78505,tN:MainThread] Error loading a set of Dynamic Display Application links: Unable to find data table named "igv_broad_genomes". +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,936 [pN:main,p:78505,tN:MainThread] Loaded display application 'igv_gff' for datatype 'gff', inherit=True. +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,936 [pN:main,p:78505,tN:MainThread] Loaded display application 'igb_gtf' for datatype 'gtf', inherit=False. +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,937 [pN:main,p:78505,tN:MainThread] Loaded display application 'ensembl_interval' for datatype 'interval', inherit=True. +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,938 [pN:main,p:78505,tN:MainThread] Loaded display application 'gbrowse_interval_as_bed' for datatype 'interval', inherit=True. +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,939 [pN:main,p:78505,tN:MainThread] Loaded display application 'rviewer_interval' for datatype 'interval', inherit=True. +galaxy.datatypes.display_applications.application ERROR 2024-02-23 14:21:35,939 [pN:main,p:78505,tN:MainThread] Error loading a set of Dynamic Display Application links: Unable to find data table named "igv_broad_genomes". +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,939 [pN:main,p:78505,tN:MainThread] Loaded display application 'igv_interval_as_bed' for datatype 'interval', inherit=True. +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,939 [pN:main,p:78505,tN:MainThread] Loaded display application 'avivator' for datatype 'ome.tiff', inherit=False. +galaxy.datatypes.display_applications.application ERROR 2024-02-23 14:21:35,940 [pN:main,p:78505,tN:MainThread] Error loading a set of Dynamic Display Application links: Unable to find data table named "q2view_display". +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,940 [pN:main,p:78505,tN:MainThread] Loaded display application 'q2view' for datatype 'qza', inherit=False. +galaxy.datatypes.display_applications.application ERROR 2024-02-23 14:21:35,940 [pN:main,p:78505,tN:MainThread] Error loading a set of Dynamic Display Application links: Unable to find data table named "q2view_display". +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,940 [pN:main,p:78505,tN:MainThread] Loaded display application 'q2view' for datatype 'qzv', inherit=False. +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,940 [pN:main,p:78505,tN:MainThread] Loaded display application 'ucsc_maf_customtrack' for datatype 'mafcustomtrack', inherit=False. +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,941 [pN:main,p:78505,tN:MainThread] Loaded display application 'minerva_tabular' for datatype 'tabular', inherit=False. +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,941 [pN:main,p:78505,tN:MainThread] Loaded display application 'ucsc_vcf' for datatype 'vcf', inherit=False. +galaxy.datatypes.display_applications.application ERROR 2024-02-23 14:21:35,942 [pN:main,p:78505,tN:MainThread] Error loading a set of Dynamic Display Application links: Unable to find data table named "igv_broad_genomes". +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,942 [pN:main,p:78505,tN:MainThread] Loaded display application 'igv_vcf' for datatype 'vcf', inherit=False. +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,942 [pN:main,p:78505,tN:MainThread] Loaded display application 'rviewer_vcf' for datatype 'vcf', inherit=True. +galaxy.datatypes.display_applications.application ERROR 2024-02-23 14:21:35,942 [pN:main,p:78505,tN:MainThread] Error loading a set of Dynamic Display Application links: Unable to find data table named "vcf_iobio". +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,942 [pN:main,p:78505,tN:MainThread] Loaded display application 'iobio_vcf' for datatype 'vcf', inherit=False. +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,943 [pN:main,p:78505,tN:MainThread] Loaded display application 'igb_wig' for datatype 'wig', inherit=False. +galaxy.datatypes.display_applications.application ERROR 2024-02-23 14:21:35,943 [pN:main,p:78505,tN:MainThread] Error loading a set of Dynamic Display Application links: Unable to find data table named "igv_broad_genomes". +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,943 [pN:main,p:78505,tN:MainThread] Loaded display application 'igv_vcf' for datatype 'vcf_bgzip', inherit=False. +galaxy.datatypes.display_applications.application ERROR 2024-02-23 14:21:35,944 [pN:main,p:78505,tN:MainThread] Error loading a set of Dynamic Display Application links: Unable to find data table named "igv_broad_genomes". +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,944 [pN:main,p:78505,tN:MainThread] Loaded display application 'igv_genbank' for datatype 'genbank', inherit=False. +galaxy.datatypes.display_applications.application ERROR 2024-02-23 14:21:35,944 [pN:main,p:78505,tN:MainThread] Error loading a set of Dynamic Display Application links: Unable to find data table named "biom_simple_display". +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,944 [pN:main,p:78505,tN:MainThread] Loaded display application 'biom_simple' for datatype 'biom1', inherit=False. +galaxy.datatypes.display_applications.application ERROR 2024-02-23 14:21:35,944 [pN:main,p:78505,tN:MainThread] Error loading a set of Dynamic Display Application links: Unable to find data table named "icn3d_simple_display". +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,944 [pN:main,p:78505,tN:MainThread] Loaded display application 'icn3d_simple' for datatype 'sdf', inherit=False. +galaxy.datatypes.display_applications.application ERROR 2024-02-23 14:21:35,945 [pN:main,p:78505,tN:MainThread] Error loading a set of Dynamic Display Application links: Unable to find data table named "icn3d_simple_display". +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,945 [pN:main,p:78505,tN:MainThread] Loaded display application 'icn3d_simple' for datatype 'mol2', inherit=False. +galaxy.datatypes.display_applications.application ERROR 2024-02-23 14:21:35,945 [pN:main,p:78505,tN:MainThread] Error loading a set of Dynamic Display Application links: Unable to find data table named "icn3d_simple_display". +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,945 [pN:main,p:78505,tN:MainThread] Loaded display application 'icn3d_simple' for datatype 'pdb', inherit=False. +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,945 [pN:main,p:78505,tN:MainThread] Loaded display application 'ucsc_trackhub' for datatype 'trackhub', inherit=False. +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,945 [pN:main,p:78505,tN:MainThread] Adding inherited display application 'ensembl_interval' to datatype 'bed' +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,945 [pN:main,p:78505,tN:MainThread] Adding inherited display application 'gbrowse_interval_as_bed' to datatype 'bed' +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,945 [pN:main,p:78505,tN:MainThread] Adding inherited display application 'rviewer_interval' to datatype 'bed' +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,945 [pN:main,p:78505,tN:MainThread] Adding inherited display application 'igv_interval_as_bed' to datatype 'bed' +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,945 [pN:main,p:78505,tN:MainThread] Adding inherited display application 'ensembl_interval' to datatype 'bedgraph' +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,945 [pN:main,p:78505,tN:MainThread] Adding inherited display application 'gbrowse_interval_as_bed' to datatype 'bedgraph' +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,945 [pN:main,p:78505,tN:MainThread] Adding inherited display application 'rviewer_interval' to datatype 'bedgraph' +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,945 [pN:main,p:78505,tN:MainThread] Adding inherited display application 'igv_interval_as_bed' to datatype 'bedgraph' +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,945 [pN:main,p:78505,tN:MainThread] Adding inherited display application 'ensembl_interval' to datatype 'bedstrict' +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,946 [pN:main,p:78505,tN:MainThread] Adding inherited display application 'gbrowse_interval_as_bed' to datatype 'bedstrict' +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,946 [pN:main,p:78505,tN:MainThread] Adding inherited display application 'rviewer_interval' to datatype 'bedstrict' +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,946 [pN:main,p:78505,tN:MainThread] Adding inherited display application 'igv_interval_as_bed' to datatype 'bedstrict' +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,946 [pN:main,p:78505,tN:MainThread] Adding inherited display application 'ensembl_interval' to datatype 'bed6' +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,946 [pN:main,p:78505,tN:MainThread] Adding inherited display application 'gbrowse_interval_as_bed' to datatype 'bed6' +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,946 [pN:main,p:78505,tN:MainThread] Adding inherited display application 'rviewer_interval' to datatype 'bed6' +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,946 [pN:main,p:78505,tN:MainThread] Adding inherited display application 'igv_interval_as_bed' to datatype 'bed6' +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,946 [pN:main,p:78505,tN:MainThread] Adding inherited display application 'ensembl_interval' to datatype 'bed12' +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,946 [pN:main,p:78505,tN:MainThread] Adding inherited display application 'gbrowse_interval_as_bed' to datatype 'bed12' +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,946 [pN:main,p:78505,tN:MainThread] Adding inherited display application 'rviewer_interval' to datatype 'bed12' +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,946 [pN:main,p:78505,tN:MainThread] Adding inherited display application 'igv_interval_as_bed' to datatype 'bed12' +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,946 [pN:main,p:78505,tN:MainThread] Adding inherited display application 'ensembl_interval' to datatype 'probed' +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,946 [pN:main,p:78505,tN:MainThread] Adding inherited display application 'gbrowse_interval_as_bed' to datatype 'probed' +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,946 [pN:main,p:78505,tN:MainThread] Adding inherited display application 'rviewer_interval' to datatype 'probed' +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,946 [pN:main,p:78505,tN:MainThread] Adding inherited display application 'igv_interval_as_bed' to datatype 'probed' +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,946 [pN:main,p:78505,tN:MainThread] Adding inherited display application 'ensembl_interval' to datatype 'chrint' +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,946 [pN:main,p:78505,tN:MainThread] Adding inherited display application 'gbrowse_interval_as_bed' to datatype 'chrint' +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,946 [pN:main,p:78505,tN:MainThread] Adding inherited display application 'rviewer_interval' to datatype 'chrint' +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,946 [pN:main,p:78505,tN:MainThread] Adding inherited display application 'igv_interval_as_bed' to datatype 'chrint' +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,946 [pN:main,p:78505,tN:MainThread] Adding inherited display application 'igv_fasta' to datatype 'fasta.gz' +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,946 [pN:main,p:78505,tN:MainThread] Adding inherited display application 'ensembl_gff' to datatype 'gff3' +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,946 [pN:main,p:78505,tN:MainThread] Adding inherited display application 'igv_gff' to datatype 'gff3' +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,946 [pN:main,p:78505,tN:MainThread] Adding inherited display application 'ensembl_gff' to datatype 'gff3.gz' +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,946 [pN:main,p:78505,tN:MainThread] Adding inherited display application 'igv_gff' to datatype 'gff3.gz' +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,946 [pN:main,p:78505,tN:MainThread] Adding inherited display application 'ensembl_gff' to datatype 'gff3.bz2' +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,946 [pN:main,p:78505,tN:MainThread] Adding inherited display application 'igv_gff' to datatype 'gff3.bz2' +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,946 [pN:main,p:78505,tN:MainThread] Adding inherited display application 'ensembl_gff' to datatype 'gtf' +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,947 [pN:main,p:78505,tN:MainThread] Adding inherited display application 'igv_gff' to datatype 'gtf' +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,947 [pN:main,p:78505,tN:MainThread] Adding inherited display application 'ensembl_interval' to datatype 'encodepeak' +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,947 [pN:main,p:78505,tN:MainThread] Adding inherited display application 'gbrowse_interval_as_bed' to datatype 'encodepeak' +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,948 [pN:main,p:78505,tN:MainThread] Adding inherited display application 'rviewer_interval' to datatype 'encodepeak' +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,948 [pN:main,p:78505,tN:MainThread] Adding inherited display application 'igv_interval_as_bed' to datatype 'encodepeak' +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,948 [pN:main,p:78505,tN:MainThread] Adding inherited display application 'igv_fasta' to datatype 'sequences' +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,948 [pN:main,p:78505,tN:MainThread] Adding inherited display application 'ensembl_interval' to datatype 'interval_tabix.gz' +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,948 [pN:main,p:78505,tN:MainThread] Adding inherited display application 'gbrowse_interval_as_bed' to datatype 'interval_tabix.gz' +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,948 [pN:main,p:78505,tN:MainThread] Adding inherited display application 'rviewer_interval' to datatype 'interval_tabix.gz' +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,948 [pN:main,p:78505,tN:MainThread] Adding inherited display application 'igv_interval_as_bed' to datatype 'interval_tabix.gz' +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,948 [pN:main,p:78505,tN:MainThread] Adding inherited display application 'ensembl_interval' to datatype 'juicer_medium_tabix.gz' +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,948 [pN:main,p:78505,tN:MainThread] Adding inherited display application 'gbrowse_interval_as_bed' to datatype 'juicer_medium_tabix.gz' +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,948 [pN:main,p:78505,tN:MainThread] Adding inherited display application 'rviewer_interval' to datatype 'juicer_medium_tabix.gz' +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,948 [pN:main,p:78505,tN:MainThread] Adding inherited display application 'igv_interval_as_bed' to datatype 'juicer_medium_tabix.gz' +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,948 [pN:main,p:78505,tN:MainThread] Adding inherited display application 'ensembl_interval' to datatype 'bed_tabix.gz' +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,948 [pN:main,p:78505,tN:MainThread] Adding inherited display application 'gbrowse_interval_as_bed' to datatype 'bed_tabix.gz' +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,948 [pN:main,p:78505,tN:MainThread] Adding inherited display application 'rviewer_interval' to datatype 'bed_tabix.gz' +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,948 [pN:main,p:78505,tN:MainThread] Adding inherited display application 'igv_interval_as_bed' to datatype 'bed_tabix.gz' +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,948 [pN:main,p:78505,tN:MainThread] Adding inherited display application 'ensembl_interval' to datatype 'gff_tabix.gz' +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,948 [pN:main,p:78505,tN:MainThread] Adding inherited display application 'gbrowse_interval_as_bed' to datatype 'gff_tabix.gz' +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,948 [pN:main,p:78505,tN:MainThread] Adding inherited display application 'rviewer_interval' to datatype 'gff_tabix.gz' +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,948 [pN:main,p:78505,tN:MainThread] Adding inherited display application 'igv_interval_as_bed' to datatype 'gff_tabix.gz' +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,949 [pN:main,p:78505,tN:MainThread] Adding inherited display application 'igv_fasta' to datatype 'mothur.align' +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,952 [pN:main,p:78505,tN:MainThread] Loaded converter: CONVERTER_uncompressed_to_gz +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,953 [pN:main,p:78505,tN:MainThread] Loaded converter: CONVERTER_gz_to_uncompressed +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,954 [pN:main,p:78505,tN:MainThread] Loaded converter: CONVERTER_uncompressed_to_gz +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,955 [pN:main,p:78505,tN:MainThread] Loaded converter: CONVERTER_gz_to_uncompressed +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,957 [pN:main,p:78505,tN:MainThread] Loaded converter: CONVERTER_uncompressed_to_gz +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,958 [pN:main,p:78505,tN:MainThread] Loaded converter: CONVERTER_gz_to_uncompressed +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,959 [pN:main,p:78505,tN:MainThread] Loaded converter: CONVERTER_Bam_Bai_0 +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,960 [pN:main,p:78505,tN:MainThread] Loaded converter: CONVERTER_bam_to_bigwig_0 +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,961 [pN:main,p:78505,tN:MainThread] Loaded converter: CONVERTER_bam_to_qname_sorted_bam +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,962 [pN:main,p:78505,tN:MainThread] Loaded converter: CONVERTER_bam_to_bigwig_0 +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,963 [pN:main,p:78505,tN:MainThread] Loaded converter: CONVERTER_bam_to_coodinate_sorted_bam +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,964 [pN:main,p:78505,tN:MainThread] Loaded converter: CONVERTER_bam_to_qname_sorted_bam +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,965 [pN:main,p:78505,tN:MainThread] Loaded converter: CONVERTER_cram_to_bam_0 +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,966 [pN:main,p:78505,tN:MainThread] Loaded converter: CONVERTER_bed_to_gff_0 +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,968 [pN:main,p:78505,tN:MainThread] Loaded converter: CONVERTER_interval_to_bgzip_0 +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,970 [pN:main,p:78505,tN:MainThread] Loaded converter: CONVERTER_interval_to_tabix_0 +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,971 [pN:main,p:78505,tN:MainThread] Loaded converter: CONVERTER_bed_gff_or_vcf_to_bigwig_0 +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,972 [pN:main,p:78505,tN:MainThread] Loaded converter: CONVERTER_bed_to_fli_0 +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,973 [pN:main,p:78505,tN:MainThread] Loaded converter: CONVERTER_bedgraph_to_bigwig +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,974 [pN:main,p:78505,tN:MainThread] Loaded converter: CONVERTER_len_to_linecount +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,975 [pN:main,p:78505,tN:MainThread] Loaded converter: CONVERTER_parquet_to_csv +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,977 [pN:main,p:78505,tN:MainThread] Loaded converter: bigwigtowig +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,980 [pN:main,p:78505,tN:MainThread] Loaded converter: CONVERTER_interval_to_bgzip_0 +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,982 [pN:main,p:78505,tN:MainThread] Loaded converter: CONVERTER_interval_to_tabix_0 +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,983 [pN:main,p:78505,tN:MainThread] Loaded converter: CONVERTER_bed_gff_or_vcf_to_bigwig_0 +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,984 [pN:main,p:78505,tN:MainThread] Loaded converter: csv_to_tabular +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,985 [pN:main,p:78505,tN:MainThread] Loaded converter: tabular_to_csv +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,986 [pN:main,p:78505,tN:MainThread] Loaded converter: CONVERTER_fasta_to_tabular +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,987 [pN:main,p:78505,tN:MainThread] Loaded converter: CONVERTER_fasta_to_bowtie_base_index +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,988 [pN:main,p:78505,tN:MainThread] Loaded converter: CONVERTER_fasta_to_bowtie_color_index +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,989 [pN:main,p:78505,tN:MainThread] Loaded converter: CONVERTER_fasta_to_2bit +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,990 [pN:main,p:78505,tN:MainThread] Loaded converter: CONVERTER_fasta_to_len +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,991 [pN:main,p:78505,tN:MainThread] Loaded converter: CONVERTER_fasta_to_fai +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,992 [pN:main,p:78505,tN:MainThread] Loaded converter: CONVERTER_uncompressed_to_gz +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,993 [pN:main,p:78505,tN:MainThread] Loaded converter: CONVERTER_gz_to_uncompressed +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,994 [pN:main,p:78505,tN:MainThread] Loaded converter: CONVERTER_fastq_to_fqtoc0 +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,996 [pN:main,p:78505,tN:MainThread] Loaded converter: CONVERTER_uncompressed_to_gz +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,997 [pN:main,p:78505,tN:MainThread] Loaded converter: CONVERTER_gz_to_uncompressed +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,998 [pN:main,p:78505,tN:MainThread] Loaded converter: CONVERTER_bz2_to_uncompressed +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,999 [pN:main,p:78505,tN:MainThread] Loaded converter: CONVERTER_fastq_to_fqtoc0 +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:36,000 [pN:main,p:78505,tN:MainThread] Loaded converter: CONVERTER_uncompressed_to_gz +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:36,001 [pN:main,p:78505,tN:MainThread] Loaded converter: CONVERTER_gz_to_uncompressed +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:36,002 [pN:main,p:78505,tN:MainThread] Loaded converter: CONVERTER_bz2_to_uncompressed +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:36,003 [pN:main,p:78505,tN:MainThread] Loaded converter: CONVERTER_fastq_to_fqtoc0 +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:36,005 [pN:main,p:78505,tN:MainThread] Loaded converter: CONVERTER_uncompressed_to_gz +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:36,006 [pN:main,p:78505,tN:MainThread] Loaded converter: CONVERTER_gz_to_uncompressed +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:36,007 [pN:main,p:78505,tN:MainThread] Loaded converter: CONVERTER_bz2_to_uncompressed +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:36,008 [pN:main,p:78505,tN:MainThread] Loaded converter: CONVERTER_fastq_to_fqtoc0 +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:36,010 [pN:main,p:78505,tN:MainThread] Loaded converter: CONVERTER_uncompressed_to_gz +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:36,011 [pN:main,p:78505,tN:MainThread] Loaded converter: CONVERTER_gz_to_uncompressed +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:36,012 [pN:main,p:78505,tN:MainThread] Loaded converter: CONVERTER_bz2_to_uncompressed +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:36,013 [pN:main,p:78505,tN:MainThread] Loaded converter: CONVERTER_fastq_to_fqtoc0 +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:36,015 [pN:main,p:78505,tN:MainThread] Loaded converter: CONVERTER_uncompressed_to_gz +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:36,016 [pN:main,p:78505,tN:MainThread] Loaded converter: CONVERTER_gz_to_uncompressed +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:36,017 [pN:main,p:78505,tN:MainThread] Loaded converter: CONVERTER_bz2_to_uncompressed +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:36,018 [pN:main,p:78505,tN:MainThread] Loaded converter: CONVERTER_gff_to_bed_0 +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:36,019 [pN:main,p:78505,tN:MainThread] Loaded converter: CONVERTER_gff_to_interval_index_0 +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:36,020 [pN:main,p:78505,tN:MainThread] Loaded converter: CONVERTER_bed_gff_or_vcf_to_bigwig_0 +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:36,021 [pN:main,p:78505,tN:MainThread] Loaded converter: CONVERTER_gff_to_fli_0 +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:36,023 [pN:main,p:78505,tN:MainThread] Loaded converter: CONVERTER_interval_to_bgzip_0 +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:36,025 [pN:main,p:78505,tN:MainThread] Loaded converter: CONVERTER_interval_to_tabix_0 +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:36,026 [pN:main,p:78505,tN:MainThread] Loaded converter: CONVERTER_uncompressed_to_gz +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:36,027 [pN:main,p:78505,tN:MainThread] Loaded converter: CONVERTER_gz_to_uncompressed +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:36,029 [pN:main,p:78505,tN:MainThread] Loaded converter: CONVERTER_bz2_to_uncompressed +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:36,029 [pN:main,p:78505,tN:MainThread] Loaded converter: CONVERTER_gff_to_interval_index_0 +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:36,030 [pN:main,p:78505,tN:MainThread] Loaded converter: CONVERTER_bed_gff_or_vcf_to_bigwig_0 +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:36,031 [pN:main,p:78505,tN:MainThread] Loaded converter: CONVERTER_interval_to_bed_0 +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:36,032 [pN:main,p:78505,tN:MainThread] Loaded converter: CONVERTER_interval_to_bedstrict_0 +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:36,033 [pN:main,p:78505,tN:MainThread] Loaded converter: CONVERTER_interval_to_bed6_0 +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:36,034 [pN:main,p:78505,tN:MainThread] Loaded converter: CONVERTER_interval_to_bed12_0 +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:36,037 [pN:main,p:78505,tN:MainThread] Loaded converter: CONVERTER_interval_to_bgzip_0 +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:36,039 [pN:main,p:78505,tN:MainThread] Loaded converter: CONVERTER_interval_to_tabix_0 +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:36,040 [pN:main,p:78505,tN:MainThread] Loaded converter: CONVERTER_interval_to_bigwig_0 +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:36,041 [pN:main,p:78505,tN:MainThread] Loaded converter: CONVERTER_picard_interval_list_to_bed6 +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:36,042 [pN:main,p:78505,tN:MainThread] Loaded converter: CONVERTER_tar_to_directory +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:36,043 [pN:main,p:78505,tN:MainThread] Loaded converter: CONVERTER_uncompressed_to_gz +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:36,044 [pN:main,p:78505,tN:MainThread] Loaded converter: CONVERTER_gz_to_uncompressed +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:36,046 [pN:main,p:78505,tN:MainThread] Loaded converter: CONVERTER_uncompressed_to_gz +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:36,047 [pN:main,p:78505,tN:MainThread] Loaded converter: CONVERTER_gz_to_uncompressed +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:36,048 [pN:main,p:78505,tN:MainThread] Loaded converter: CONVERTER_uncompressed_to_gz +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:36,049 [pN:main,p:78505,tN:MainThread] Loaded converter: CONVERTER_gz_to_uncompressed +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:36,050 [pN:main,p:78505,tN:MainThread] Loaded converter: CONVERTER_maf_to_fasta_0 +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:36,051 [pN:main,p:78505,tN:MainThread] Loaded converter: CONVERTER_maf_to_interval_0 +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:36,053 [pN:main,p:78505,tN:MainThread] Loaded converter: CONVERTER_interval_to_tabix_0 +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:36,056 [pN:main,p:78505,tN:MainThread] Loaded converter: CONVERTER_interval_to_bgzip_0 +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:36,057 [pN:main,p:78505,tN:MainThread] Loaded converter: CONVERTER_bed_gff_or_vcf_to_bigwig_0 +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:36,059 [pN:main,p:78505,tN:MainThread] Loaded converter: CONVERTER_interval_to_bgzip_0 +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:36,061 [pN:main,p:78505,tN:MainThread] Loaded converter: CONVERTER_interval_to_tabix_0 +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:36,062 [pN:main,p:78505,tN:MainThread] Loaded converter: CONVERTER_sam_to_unsorted_bam +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:36,063 [pN:main,p:78505,tN:MainThread] Loaded converter: CONVERTER_bam_to_coodinate_sorted_bam +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:36,064 [pN:main,p:78505,tN:MainThread] Loaded converter: CONVERTER_bam_to_qname_sorted_bam +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:36,065 [pN:main,p:78505,tN:MainThread] Loaded converter: CONVERTER_sam_to_bigwig_0 +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:36,066 [pN:main,p:78505,tN:MainThread] Loaded converter: tabular_to_dbnsfp +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:36,067 [pN:main,p:78505,tN:MainThread] Loaded converter: tabular_to_csv +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:36,069 [pN:main,p:78505,tN:MainThread] Loaded converter: CONVERTER_uncompressed_to_gz +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:36,070 [pN:main,p:78505,tN:MainThread] Loaded converter: CONVERTER_gz_to_uncompressed +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:36,072 [pN:main,p:78505,tN:MainThread] Loaded converter: CONVERTER_interval_to_bgzip_0 +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:36,073 [pN:main,p:78505,tN:MainThread] Loaded converter: CONVERTER_vcf_to_vcf_bgzip_0 +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:36,075 [pN:main,p:78505,tN:MainThread] Loaded converter: CONVERTER_interval_to_tabix_0 +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:36,076 [pN:main,p:78505,tN:MainThread] Loaded converter: CONVERTER_bed_gff_or_vcf_to_bigwig_0 +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:36,078 [pN:main,p:78505,tN:MainThread] Loaded converter: CONVERTER_uncompressed_to_gz +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:36,079 [pN:main,p:78505,tN:MainThread] Loaded converter: CONVERTER_bcf_uncompressed_to_bcf +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:36,080 [pN:main,p:78505,tN:MainThread] Loaded converter: CONVERTER_bcf_uncompressed_to_bcf +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:36,081 [pN:main,p:78505,tN:MainThread] Loaded converter: CONVERTER_wig_to_bigwig +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:36,082 [pN:main,p:78505,tN:MainThread] Loaded converter: CONVERTER_wiggle_to_interval_0 +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:36,084 [pN:main,p:78505,tN:MainThread] Loaded converter: CONVERTER_vcf_bgzip_to_tabix_0 +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:36,085 [pN:main,p:78505,tN:MainThread] Loaded converter: CONVERTER_gz_to_uncompressed +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:36,085 [pN:main,p:78505,tN:MainThread] Loaded converter: lped2fpedconvert +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:36,086 [pN:main,p:78505,tN:MainThread] Loaded converter: lped2pbedconvert +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:36,087 [pN:main,p:78505,tN:MainThread] Loaded converter: pbed2lpedconvert +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:36,088 [pN:main,p:78505,tN:MainThread] Loaded converter: pbed2ldindepconvert +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:36,089 [pN:main,p:78505,tN:MainThread] Loaded converter: CONVERTER_uncompressed_to_gz +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:36,091 [pN:main,p:78505,tN:MainThread] Loaded converter: CONVERTER_gz_to_uncompressed +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:36,092 [pN:main,p:78505,tN:MainThread] Loaded converter: CONVERTER_biom +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:36,094 [pN:main,p:78505,tN:MainThread] Loaded converter: CONVERTER_biom +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:36,099 [pN:main,p:78505,tN:MainThread] Loaded converter: CONVERTER_molecules +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:36,104 [pN:main,p:78505,tN:MainThread] Loaded converter: CONVERTER_molecules +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:36,109 [pN:main,p:78505,tN:MainThread] Loaded converter: CONVERTER_molecules +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:36,110 [pN:main,p:78505,tN:MainThread] Loaded converter: CONVERTER_SMILES_to_MOL +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:36,115 [pN:main,p:78505,tN:MainThread] Loaded converter: CONVERTER_molecules +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:36,116 [pN:main,p:78505,tN:MainThread] Loaded converter: CONVERTER_smiles_to_smiles +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:36,121 [pN:main,p:78505,tN:MainThread] Loaded converter: CONVERTER_molecules +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:36,126 [pN:main,p:78505,tN:MainThread] Loaded converter: CONVERTER_molecules +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:36,131 [pN:main,p:78505,tN:MainThread] Loaded converter: CONVERTER_molecules +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:36,136 [pN:main,p:78505,tN:MainThread] Loaded converter: CONVERTER_molecules +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:36,141 [pN:main,p:78505,tN:MainThread] Loaded converter: CONVERTER_molecules +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:36,146 [pN:main,p:78505,tN:MainThread] Loaded converter: CONVERTER_molecules +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:36,147 [pN:main,p:78505,tN:MainThread] Loaded converter: CONVERTER_inchi_to_mol +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:36,152 [pN:main,p:78505,tN:MainThread] Loaded converter: CONVERTER_molecules +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:36,157 [pN:main,p:78505,tN:MainThread] Loaded converter: CONVERTER_molecules +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:36,163 [pN:main,p:78505,tN:MainThread] Loaded converter: CONVERTER_molecules +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:36,168 [pN:main,p:78505,tN:MainThread] Loaded converter: CONVERTER_molecules +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:36,173 [pN:main,p:78505,tN:MainThread] Loaded converter: CONVERTER_molecules +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:36,178 [pN:main,p:78505,tN:MainThread] Loaded converter: CONVERTER_molecules +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:36,183 [pN:main,p:78505,tN:MainThread] Loaded converter: CONVERTER_molecules +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:36,188 [pN:main,p:78505,tN:MainThread] Loaded converter: CONVERTER_molecules +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:36,193 [pN:main,p:78505,tN:MainThread] Loaded converter: CONVERTER_molecules +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:36,198 [pN:main,p:78505,tN:MainThread] Loaded converter: CONVERTER_molecules +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:36,199 [pN:main,p:78505,tN:MainThread] Loaded converter: CONVERTER_mol2_to_mol +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:36,204 [pN:main,p:78505,tN:MainThread] Loaded converter: CONVERTER_molecules +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:36,206 [pN:main,p:78505,tN:MainThread] Loaded converter: CONVERTER_cml_to_smiles +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:36,211 [pN:main,p:78505,tN:MainThread] Loaded converter: CONVERTER_molecules +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:36,216 [pN:main,p:78505,tN:MainThread] Loaded converter: CONVERTER_molecules +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:36,221 [pN:main,p:78505,tN:MainThread] Loaded converter: CONVERTER_molecules +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:36,223 [pN:main,p:78505,tN:MainThread] Loaded converter: CONVERTER_Pdb_to_Gro_0 +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:36,224 [pN:main,p:78505,tN:MainThread] Loaded converter: CONVERTER_mdconvert +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:36,226 [pN:main,p:78505,tN:MainThread] Loaded converter: CONVERTER_mdconvert +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:36,228 [pN:main,p:78505,tN:MainThread] Loaded converter: CONVERTER_mdconvert +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:36,231 [pN:main,p:78505,tN:MainThread] Loaded converter: CONVERTER_mdconvert +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:36,233 [pN:main,p:78505,tN:MainThread] Loaded converter: CONVERTER_mdconvert +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:36,235 [pN:main,p:78505,tN:MainThread] Loaded converter: CONVERTER_mdconvert +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:36,236 [pN:main,p:78505,tN:MainThread] Loaded converter: CONVERTER_Gro_to_Pdb_0 +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:36,237 [pN:main,p:78505,tN:MainThread] Loaded converter: CONVERTER_ref_to_seq_taxomony +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:36,238 [pN:main,p:78505,tN:MainThread] Loaded converter: CONVERTER_neostorezip_to_neostore +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:36,240 [pN:main,p:78505,tN:MainThread] Loaded external metadata tool: __SET_METADATA__ +galaxy.tools.special_tools DEBUG 2024-02-23 14:21:36,241 [pN:main,p:78505,tN:MainThread] Loaded history export tool: __EXPORT_HISTORY__ +galaxy.tools.special_tools DEBUG 2024-02-23 14:21:36,242 [pN:main,p:78505,tN:MainThread] Loaded history export to uri tool: __EXPORT_HISTORY_TO_URI__ +galaxy.tools.special_tools DEBUG 2024-02-23 14:21:36,243 [pN:main,p:78505,tN:MainThread] Loaded history import tool: __IMPORT_HISTORY__ +galaxy.tools.special_tools DEBUG 2024-02-23 14:21:36,244 [pN:main,p:78505,tN:MainThread] Loaded data fetch tool: __DATA_FETCH__ +galaxy.visualization.plugins.registry INFO 2024-02-23 14:21:36,245 [pN:main,p:78505,tN:MainThread] VisualizationsRegistry, loaded plugin: PCA_3Dplot +galaxy.visualization.plugins.registry INFO 2024-02-23 14:21:36,246 [pN:main,p:78505,tN:MainThread] VisualizationsRegistry, loaded plugin: aequatus +galaxy.visualization.plugins.registry INFO 2024-02-23 14:21:36,247 [pN:main,p:78505,tN:MainThread] VisualizationsRegistry, loaded plugin: annotate_image +galaxy.visualization.plugins.config_parser INFO 2024-02-23 14:21:36,248 [pN:main,p:78505,tN:MainThread] template syntax is deprecated: use entry_point instead +galaxy.visualization.plugins.registry INFO 2024-02-23 14:21:36,248 [pN:main,p:78505,tN:MainThread] VisualizationsRegistry, loaded plugin: chiraviz +galaxy.visualization.plugins.config_parser INFO 2024-02-23 14:21:36,249 [pN:main,p:78505,tN:MainThread] Visualizations plugin disabled: Circster. Skipping... +galaxy.visualization.plugins.config_parser INFO 2024-02-23 14:21:36,249 [pN:main,p:78505,tN:MainThread] template syntax is deprecated: use entry_point instead +galaxy.visualization.plugins.registry INFO 2024-02-23 14:21:36,249 [pN:main,p:78505,tN:MainThread] VisualizationsRegistry, loaded plugin: csg +galaxy.visualization.plugins.registry INFO 2024-02-23 14:21:36,250 [pN:main,p:78505,tN:MainThread] VisualizationsRegistry, loaded plugin: cytoscape +galaxy.visualization.plugins.registry INFO 2024-02-23 14:21:36,251 [pN:main,p:78505,tN:MainThread] VisualizationsRegistry, loaded plugin: drawrna +galaxy.visualization.plugins.registry INFO 2024-02-23 14:21:36,252 [pN:main,p:78505,tN:MainThread] VisualizationsRegistry, loaded plugin: editor +galaxy.visualization.plugins.registry INFO 2024-02-23 14:21:36,253 [pN:main,p:78505,tN:MainThread] VisualizationsRegistry, loaded plugin: example +galaxy.visualization.plugins.config_parser INFO 2024-02-23 14:21:36,254 [pN:main,p:78505,tN:MainThread] template syntax is deprecated: use entry_point instead +galaxy.visualization.plugins.registry INFO 2024-02-23 14:21:36,255 [pN:main,p:78505,tN:MainThread] VisualizationsRegistry, loaded plugin: fits_image_viewer +galaxy.visualization.plugins.config_parser INFO 2024-02-23 14:21:36,256 [pN:main,p:78505,tN:MainThread] template syntax is deprecated: use entry_point instead +galaxy.visualization.plugins.registry INFO 2024-02-23 14:21:36,256 [pN:main,p:78505,tN:MainThread] VisualizationsRegistry, loaded plugin: graphviz +galaxy.visualization.plugins.registry INFO 2024-02-23 14:21:36,256 [pN:main,p:78505,tN:MainThread] VisualizationsRegistry, loaded plugin: h5web +galaxy.visualization.plugins.registry INFO 2024-02-23 14:21:36,259 [pN:main,p:78505,tN:MainThread] VisualizationsRegistry, loaded plugin: heatmap_cluster +galaxy.visualization.plugins.registry INFO 2024-02-23 14:21:36,261 [pN:main,p:78505,tN:MainThread] VisualizationsRegistry, loaded plugin: heatmap_default +galaxy.visualization.plugins.config_parser INFO 2024-02-23 14:21:36,261 [pN:main,p:78505,tN:MainThread] template syntax is deprecated: use entry_point instead +galaxy.visualization.plugins.registry INFO 2024-02-23 14:21:36,261 [pN:main,p:78505,tN:MainThread] VisualizationsRegistry, loaded plugin: hivtrace +galaxy.visualization.plugins.config_parser INFO 2024-02-23 14:21:36,262 [pN:main,p:78505,tN:MainThread] template syntax is deprecated: use entry_point instead +galaxy.visualization.plugins.registry INFO 2024-02-23 14:21:36,262 [pN:main,p:78505,tN:MainThread] VisualizationsRegistry, loaded plugin: hyphyvision +galaxy.visualization.plugins.registry INFO 2024-02-23 14:21:36,264 [pN:main,p:78505,tN:MainThread] VisualizationsRegistry, loaded plugin: jqplot_bar +galaxy.visualization.plugins.registry INFO 2024-02-23 14:21:36,267 [pN:main,p:78505,tN:MainThread] VisualizationsRegistry, loaded plugin: jqplot_box +galaxy.visualization.plugins.registry INFO 2024-02-23 14:21:36,269 [pN:main,p:78505,tN:MainThread] VisualizationsRegistry, loaded plugin: jqplot_histogram +galaxy.visualization.plugins.registry INFO 2024-02-23 14:21:36,271 [pN:main,p:78505,tN:MainThread] VisualizationsRegistry, loaded plugin: jqplot_line +galaxy.visualization.plugins.registry INFO 2024-02-23 14:21:36,273 [pN:main,p:78505,tN:MainThread] VisualizationsRegistry, loaded plugin: jqplot_scatter +galaxy.visualization.plugins.config_parser INFO 2024-02-23 14:21:36,273 [pN:main,p:78505,tN:MainThread] template syntax is deprecated: use entry_point instead +galaxy.visualization.plugins.registry INFO 2024-02-23 14:21:36,273 [pN:main,p:78505,tN:MainThread] VisualizationsRegistry, loaded plugin: audio_player +galaxy.visualization.plugins.config_parser INFO 2024-02-23 14:21:36,274 [pN:main,p:78505,tN:MainThread] template syntax is deprecated: use entry_point instead +galaxy.visualization.plugins.registry INFO 2024-02-23 14:21:36,274 [pN:main,p:78505,tN:MainThread] VisualizationsRegistry, loaded plugin: video_player +galaxy.visualization.plugins.registry INFO 2024-02-23 14:21:36,274 [pN:main,p:78505,tN:MainThread] VisualizationsRegistry, loaded plugin: msa +galaxy.visualization.plugins.config_parser INFO 2024-02-23 14:21:36,275 [pN:main,p:78505,tN:MainThread] template syntax is deprecated: use entry_point instead +galaxy.visualization.plugins.registry INFO 2024-02-23 14:21:36,276 [pN:main,p:78505,tN:MainThread] VisualizationsRegistry, loaded plugin: mvpapp +galaxy.visualization.plugins.registry INFO 2024-02-23 14:21:36,277 [pN:main,p:78505,tN:MainThread] VisualizationsRegistry, loaded plugin: ngl +galaxy.visualization.plugins.registry INFO 2024-02-23 14:21:36,278 [pN:main,p:78505,tN:MainThread] VisualizationsRegistry, loaded plugin: nora +galaxy.visualization.plugins.registry INFO 2024-02-23 14:21:36,280 [pN:main,p:78505,tN:MainThread] VisualizationsRegistry, loaded plugin: nvd3_bar +galaxy.visualization.plugins.registry INFO 2024-02-23 14:21:36,282 [pN:main,p:78505,tN:MainThread] VisualizationsRegistry, loaded plugin: nvd3_bar_stacked +galaxy.visualization.plugins.registry INFO 2024-02-23 14:21:36,284 [pN:main,p:78505,tN:MainThread] VisualizationsRegistry, loaded plugin: nvd3_histogram +galaxy.visualization.plugins.registry INFO 2024-02-23 14:21:36,286 [pN:main,p:78505,tN:MainThread] VisualizationsRegistry, loaded plugin: nvd3_histogram_discrete +galaxy.visualization.plugins.registry INFO 2024-02-23 14:21:36,288 [pN:main,p:78505,tN:MainThread] VisualizationsRegistry, loaded plugin: nvd3_horizontal +galaxy.visualization.plugins.registry INFO 2024-02-23 14:21:36,290 [pN:main,p:78505,tN:MainThread] VisualizationsRegistry, loaded plugin: nvd3_horizontal_stacked +galaxy.visualization.plugins.registry INFO 2024-02-23 14:21:36,292 [pN:main,p:78505,tN:MainThread] VisualizationsRegistry, loaded plugin: nvd3_line +galaxy.visualization.plugins.registry INFO 2024-02-23 14:21:36,294 [pN:main,p:78505,tN:MainThread] VisualizationsRegistry, loaded plugin: nvd3_line_focus +galaxy.visualization.plugins.registry INFO 2024-02-23 14:21:36,296 [pN:main,p:78505,tN:MainThread] VisualizationsRegistry, loaded plugin: nvd3_pie +galaxy.visualization.plugins.registry INFO 2024-02-23 14:21:36,298 [pN:main,p:78505,tN:MainThread] VisualizationsRegistry, loaded plugin: nvd3_scatter +galaxy.visualization.plugins.registry INFO 2024-02-23 14:21:36,300 [pN:main,p:78505,tN:MainThread] VisualizationsRegistry, loaded plugin: nvd3_stackedarea +galaxy.visualization.plugins.registry INFO 2024-02-23 14:21:36,302 [pN:main,p:78505,tN:MainThread] VisualizationsRegistry, loaded plugin: nvd3_stackedarea_full +galaxy.visualization.plugins.registry INFO 2024-02-23 14:21:36,304 [pN:main,p:78505,tN:MainThread] VisualizationsRegistry, loaded plugin: nvd3_stackedarea_stream +galaxy.visualization.plugins.registry INFO 2024-02-23 14:21:36,305 [pN:main,p:78505,tN:MainThread] VisualizationsRegistry, loaded plugin: openlayers +galaxy.visualization.plugins.registry INFO 2024-02-23 14:21:36,306 [pN:main,p:78505,tN:MainThread] VisualizationsRegistry, loaded plugin: openseadragon +galaxy.visualization.plugins.registry INFO 2024-02-23 14:21:36,307 [pN:main,p:78505,tN:MainThread] VisualizationsRegistry, loaded plugin: phylocanvas +galaxy.visualization.plugins.registry INFO 2024-02-23 14:21:36,308 [pN:main,p:78505,tN:MainThread] VisualizationsRegistry, loaded plugin: phyloviz +galaxy.visualization.plugins.registry INFO 2024-02-23 14:21:36,309 [pN:main,p:78505,tN:MainThread] VisualizationsRegistry, loaded plugin: pv +galaxy.visualization.plugins.registry INFO 2024-02-23 14:21:36,310 [pN:main,p:78505,tN:MainThread] VisualizationsRegistry, loaded plugin: scatterplot +galaxy.visualization.plugins.config_parser INFO 2024-02-23 14:21:36,310 [pN:main,p:78505,tN:MainThread] Visualizations plugin disabled: Sweepster. Skipping... +galaxy.visualization.plugins.registry INFO 2024-02-23 14:21:36,311 [pN:main,p:78505,tN:MainThread] VisualizationsRegistry, loaded plugin: trackster +galaxy.visualization.plugins.registry INFO 2024-02-23 14:21:36,311 [pN:main,p:78505,tN:MainThread] VisualizationsRegistry, loaded plugin: ts_visjs +galaxy.visualization.plugins.config_parser INFO 2024-02-23 14:21:36,312 [pN:main,p:78505,tN:MainThread] template syntax is deprecated: use entry_point instead +galaxy.visualization.plugins.registry INFO 2024-02-23 14:21:36,312 [pN:main,p:78505,tN:MainThread] VisualizationsRegistry, loaded plugin: unipept +galaxy.visualization.plugins.registry INFO 2024-02-23 14:21:36,312 [pN:main,p:78505,tN:MainThread] VisualizationsRegistry, loaded plugin: venn +galaxy.tours._impl INFO 2024-02-23 14:21:36,337 [pN:main,p:78505,tN:MainThread] Loaded tour 'core.galaxy_ui' +galaxy.tours._impl INFO 2024-02-23 14:21:36,354 [pN:main,p:78505,tN:MainThread] Loaded tour 'core.deferred' +galaxy.tours._impl INFO 2024-02-23 14:21:36,366 [pN:main,p:78505,tN:MainThread] Loaded tour 'core.history' +galaxy.tours._impl INFO 2024-02-23 14:21:36,377 [pN:main,p:78505,tN:MainThread] Loaded tour 'core.windows' +galaxy.workflow.scheduling_manager INFO 2024-02-23 14:21:36,383 [pN:main,p:78505,tN:MainThread] No workflow schedulers plugin config file defined, using default scheduler. +galaxy.web_stack.handlers INFO 2024-02-23 14:21:36,383 [pN:main,p:78505,tN:MainThread] WorkflowSchedulingManager: No job handler assignment method is set, defaulting to 'HANDLER_ASSIGNMENT_METHODS.DB_SKIP_LOCKED', set the `assign_with` attribute on <handlers> to override the default +galaxy.workflow.scheduling_manager DEBUG 2024-02-23 14:21:36,384 [pN:main,p:78505,tN:MainThread] Starting workflow schedulers +galaxy.app INFO 2024-02-23 14:21:36,386 [pN:main,p:78505,tN:MainThread] Galaxy app startup finished (2552.949 ms) +galaxy.web.framework.base DEBUG 2024-02-23 14:21:36,413 [pN:main,p:78505,tN:MainThread] Enabling 'user' controller, class: User +galaxy.web.framework.base DEBUG 2024-02-23 14:21:36,414 [pN:main,p:78505,tN:MainThread] Enabling 'data_manager' controller, class: DataManager +galaxy.web.framework.base DEBUG 2024-02-23 14:21:36,415 [pN:main,p:78505,tN:MainThread] Enabling 'async' controller, class: ASync +galaxy.web.framework.base DEBUG 2024-02-23 14:21:36,415 [pN:main,p:78505,tN:MainThread] Enabling 'tag' controller, class: TagsController +galaxy.web.framework.base DEBUG 2024-02-23 14:21:36,420 [pN:main,p:78505,tN:MainThread] Enabling 'page' controller, class: PageController +galaxy.web.framework.base DEBUG 2024-02-23 14:21:36,421 [pN:main,p:78505,tN:MainThread] Enabling 'root' controller, class: RootController +galaxy.web.framework.base DEBUG 2024-02-23 14:21:36,421 [pN:main,p:78505,tN:MainThread] Enabling 'tool_runner' controller, class: ToolRunner +galaxy.web.framework.base DEBUG 2024-02-23 14:21:36,422 [pN:main,p:78505,tN:MainThread] Enabling 'error' controller, class: Error +galaxy.web.framework.base DEBUG 2024-02-23 14:21:36,423 [pN:main,p:78505,tN:MainThread] Enabling 'forms' controller, class: Forms +galaxy.web.framework.base DEBUG 2024-02-23 14:21:36,437 [pN:main,p:78505,tN:MainThread] Enabling 'admin_toolshed' controller, class: AdminGalaxy +galaxy.web.framework.base DEBUG 2024-02-23 14:21:36,438 [pN:main,p:78505,tN:MainThread] Enabling 'admin_toolshed' controller, class: AdminToolshed +galaxy.web.framework.base DEBUG 2024-02-23 14:21:36,439 [pN:main,p:78505,tN:MainThread] Enabling 'visualization' controller, class: VisualizationController +galaxy.web.framework.base DEBUG 2024-02-23 14:21:36,440 [pN:main,p:78505,tN:MainThread] Enabling 'shed_tool_static' controller, class: ShedToolStatic +galaxy.web.framework.base DEBUG 2024-02-23 14:21:36,440 [pN:main,p:78505,tN:MainThread] Enabling 'authnz' controller, class: JSAppLauncher +galaxy.web.framework.base DEBUG 2024-02-23 14:21:36,441 [pN:main,p:78505,tN:MainThread] Enabling 'authnz' controller, class: OIDC +galaxy.web.framework.base DEBUG 2024-02-23 14:21:36,442 [pN:main,p:78505,tN:MainThread] Enabling 'workflow' controller, class: WorkflowController +galaxy.web.framework.base DEBUG 2024-02-23 14:21:36,444 [pN:main,p:78505,tN:MainThread] Enabling 'history' controller, class: HistoryController +galaxy.web.framework.base DEBUG 2024-02-23 14:21:36,474 [pN:main,p:78505,tN:MainThread] Enabling 'dataset' controller, class: DatasetInterface +galaxy.web.framework.base DEBUG 2024-02-23 14:21:36,474 [pN:main,p:78505,tN:MainThread] Enabling 'admin' controller, class: AdminGalaxy +galaxy.web.framework.base DEBUG 2024-02-23 14:21:37,175 [pN:main,p:78505,tN:MainThread] Enabling 'library_datasets' API controller, class: LibraryDatasetsController +galaxy.web.framework.base DEBUG 2024-02-23 14:21:37,328 [pN:main,p:78505,tN:MainThread] Enabling 'jobs' API controller, class: JobController +galaxy.web.framework.base DEBUG 2024-02-23 14:21:37,448 [pN:main,p:78505,tN:MainThread] Enabling 'job_files' API controller, class: JobFilesAPIController +galaxy.web.framework.base DEBUG 2024-02-23 14:21:37,495 [pN:main,p:78505,tN:MainThread] Enabling 'toolshed' API controller, class: ToolShedController +galaxy.web.framework.base DEBUG 2024-02-23 14:21:37,511 [pN:main,p:78505,tN:MainThread] Enabling 'tools' API controller, class: ToolsController +galaxy.web.framework.base DEBUG 2024-02-23 14:21:37,632 [pN:main,p:78505,tN:MainThread] Enabling 'trs_consumer' API controller, class: TrsConsumeAPIController +galaxy.web.framework.base DEBUG 2024-02-23 14:21:37,633 [pN:main,p:78505,tN:MainThread] Enabling 'history_dataset_extended_metadata' API controller, class: HistoryDatasetExtendMetadataController +galaxy.web.framework.base DEBUG 2024-02-23 14:21:37,633 [pN:main,p:78505,tN:MainThread] Enabling 'library_dataset_extended_metadata' API controller, class: LibraryDatasetExtendMetadataController +galaxy.web.framework.base DEBUG 2024-02-23 14:21:37,634 [pN:main,p:78505,tN:MainThread] Enabling 'container_resolution' API controller, class: ContainerResolutionAPIController +galaxy.web.framework.base DEBUG 2024-02-23 14:21:37,634 [pN:main,p:78505,tN:MainThread] Enabling 'job_ports' API controller, class: JobPortsAPIController +galaxy.web.framework.base DEBUG 2024-02-23 14:21:37,635 [pN:main,p:78505,tN:MainThread] Enabling 'tool_dependencies' API controller, class: ToolDependenciesAPIController +galaxy.web.framework.base DEBUG 2024-02-23 14:21:37,775 [pN:main,p:78505,tN:MainThread] Enabling 'history_content_provenance' API controller, class: HDAProvenanceController +galaxy.web.framework.base DEBUG 2024-02-23 14:21:37,775 [pN:main,p:78505,tN:MainThread] Enabling 'ldda_provenance' API controller, class: LDDAProvenanceController +galaxy.web.framework.base DEBUG 2024-02-23 14:21:37,775 [pN:main,p:78505,tN:MainThread] Enabling 'tool_entry_points' API controller, class: ToolEntryPointsAPIController +galaxy.web.framework.base DEBUG 2024-02-23 14:21:37,909 [pN:main,p:78505,tN:MainThread] Enabling 'authenticate' API controller, class: AuthenticationController +galaxy.web.framework.base DEBUG 2024-02-23 14:21:38,315 [pN:main,p:78505,tN:MainThread] Enabling 'trs_search' API controller, class: TrsSearchAPIController +galaxy.web.framework.base DEBUG 2024-02-23 14:21:38,366 [pN:main,p:78505,tN:MainThread] Enabling 'tool_shed_repositories' API controller, class: ToolShedRepositoriesController +galaxy.web.framework.base DEBUG 2024-02-23 14:21:38,547 [pN:main,p:78505,tN:MainThread] Enabling 'forms' API controller, class: FormDefinitionAPIController +galaxy.web.framework.base DEBUG 2024-02-23 14:21:38,735 [pN:main,p:78505,tN:MainThread] Enabling 'workflows' API controller, class: WorkflowsAPIController +galaxy.web.framework.base DEBUG 2024-02-23 14:21:38,735 [pN:main,p:78505,tN:MainThread] Enabling 'uploads' API controller, class: UploadsAPIController +galaxy.web.framework.base DEBUG 2024-02-23 14:21:39,227 [pN:main,p:78505,tN:MainThread] Enabling 'history_annotations' API controller, class: HistoryAnnotationsController +galaxy.web.framework.base DEBUG 2024-02-23 14:21:39,227 [pN:main,p:78505,tN:MainThread] Enabling 'history_content_annotations' API controller, class: HistoryContentAnnotationsController +galaxy.web.framework.base DEBUG 2024-02-23 14:21:39,228 [pN:main,p:78505,tN:MainThread] Enabling 'workflow_annotations' API controller, class: WorkflowAnnotationsController +galaxy.web.framework.base DEBUG 2024-02-23 14:21:39,272 [pN:main,p:78505,tN:MainThread] Enabling 'visualizations' API controller, class: VisualizationsController +galaxy.web.framework.base DEBUG 2024-02-23 14:21:39,273 [pN:main,p:78505,tN:MainThread] Enabling 'sanitize_allow' API controller, class: SanitizeAllowController +galaxy.web.framework.base DEBUG 2024-02-23 14:21:39,273 [pN:main,p:78505,tN:MainThread] Enabling 'page_revisions' API controller, class: PageRevisionsController +galaxy.web.framework.base DEBUG 2024-02-23 14:21:39,345 [pN:main,p:78505,tN:MainThread] Enabling 'library_contents' API controller, class: LibraryContentsController +galaxy.web.framework.base DEBUG 2024-02-23 14:21:39,463 [pN:main,p:78505,tN:MainThread] Enabling 'users' API controller, class: UserAPIController +galaxy.web.framework.base DEBUG 2024-02-23 14:21:39,463 [pN:main,p:78505,tN:MainThread] Enabling 'cloudauthz' API controller, class: CloudAuthzController +galaxy.web.framework.base DEBUG 2024-02-23 14:21:39,464 [pN:main,p:78505,tN:MainThread] Enabling 'webhooks' API controller, class: WebhooksController +galaxy.web.framework.base DEBUG 2024-02-23 14:21:39,538 [pN:main,p:78505,tN:MainThread] Enabling 'plugins' API controller, class: PluginsController +galaxy.web.framework.base DEBUG 2024-02-23 14:21:39,573 [pN:main,p:78505,tN:MainThread] Enabling 'dynamic_tools' API controller, class: DynamicToolsController +2024-02-23 14:21:39,857 INFO success: celery entered RUNNING state, process has stayed up for > than 10 seconds (startsecs) +galaxy.webapps.util DEBUG 2024-02-23 14:21:39,857 [pN:main,p:78505,tN:MainThread] Enabling 'paste.httpexceptions' middleware +2024-02-23 14:21:39,858 INFO success: celery-beat entered RUNNING state, process has stayed up for > than 10 seconds (startsecs) +galaxy.webapps.util DEBUG 2024-02-23 14:21:39,857 [pN:main,p:78505,tN:MainThread] Enabling 'RemoteUser' middleware +galaxy.webapps.util DEBUG 2024-02-23 14:21:39,857 [pN:main,p:78505,tN:MainThread] Enabling 'ErrorMiddleware' middleware +galaxy.webapps.util DEBUG 2024-02-23 14:21:39,857 [pN:main,p:78505,tN:MainThread] Enabling 'TusMiddleware' middleware +galaxy.webapps.util DEBUG 2024-02-23 14:21:39,857 [pN:main,p:78505,tN:MainThread] Enabling 'XForwardedHostMiddleware' middleware +galaxy.webapps.util DEBUG 2024-02-23 14:21:39,857 [pN:main,p:78505,tN:MainThread] Enabling 'RequestIDMiddleware' middleware +galaxy.webapps.util DEBUG 2024-02-23 14:21:39,857 [pN:main,p:78505,tN:MainThread] Enabling 'build_url_map' middleware +galaxy.webapps.galaxy.buildapp DEBUG 2024-02-23 14:21:39,858 [pN:main,p:78505,tN:MainThread] Prior to webapp return, Galaxy thread <_MainThread(MainThread, started 139838623614784)> is alive. +/scratch/rico/galaxy/lib/galaxy/webapps/openapi/utils.py:463: UserWarning: Merging operation with id fetch_json_api_tools_fetch_post with operation with id fetch_form_api_tools_fetch_post. + warnings.warn(message) # noqa: B028 +[2024-02-23 14:21:41 -0500] [78505] [INFO] Starting gunicorn 21.2.0 +[2024-02-23 14:21:41 -0500] [78505] [INFO] Listening at: http://127.0.0.1:9090 (78505) +[2024-02-23 14:21:41 -0500] [78505] [INFO] Using worker: galaxy.webapps.galaxy.workers.Worker +[2024-02-23 14:21:41 -0500] [78709] [INFO] Booting worker with pid: 78709 +galaxy.web_stack DEBUG 2024-02-23 14:21:41,492 [pN:main.1,p:78709,tN:Thread-2] server_name set to: main.1 +galaxy.jobs.manager DEBUG 2024-02-23 14:21:41,493 [pN:main.1,p:78709,tN:Thread-2] Initializing job handler +galaxy.jobs INFO 2024-02-23 14:21:41,494 [pN:main.1,p:78709,tN:Thread-2] Handler 'main.1' will load all configured runner plugins +galaxy.jobs.runners.state_handler_factory DEBUG 2024-02-23 14:21:41,509 [pN:main.1,p:78709,tN:Thread-2] Loaded 'failure' state handler from module galaxy.jobs.runners.state_handlers.resubmit +galaxy.jobs DEBUG 2024-02-23 14:21:41,509 [pN:main.1,p:78709,tN:Thread-2] Loaded job runner 'galaxy.jobs.runners.local:LocalJobRunner' as 'local' +galaxy.jobs.handler DEBUG 2024-02-23 14:21:41,509 [pN:main.1,p:78709,tN:Thread-2] Loaded job runners plugins: local +galaxy.jobs.runners DEBUG 2024-02-23 14:21:41,510 [pN:main.1,p:78709,tN:Thread-2] Starting 4 LocalRunner workers +galaxy.jobs.handler DEBUG 2024-02-23 14:21:41,514 [pN:main.1,p:78709,tN:Thread-2] Handler queue starting for jobs assigned to handler: main.1 +galaxy.jobs.handler INFO 2024-02-23 14:21:41,546 [pN:main.1,p:78709,tN:JobHandlerQueue.monitor_thread] Handler job grabber initialized with 'HANDLER_ASSIGNMENT_METHODS.DB_SKIP_LOCKED' assignment method for handler 'main.1', tag(s): +galaxy.jobs.handler INFO 2024-02-23 14:21:41,546 [pN:main.1,p:78709,tN:Thread-2] job handler queue started +galaxy.jobs.handler INFO 2024-02-23 14:21:41,553 [pN:main.1,p:78709,tN:Thread-2] job handler stop queue started +galaxy.jobs.handler INFO 2024-02-23 14:21:41,556 [pN:main.1,p:78709,tN:WorkflowRequestMonitor.monitor_thread] Handler job grabber initialized with 'HANDLER_ASSIGNMENT_METHODS.DB_SKIP_LOCKED' assignment method for handler 'main.1', tag(s): None, _default_ +galaxy.queue_worker INFO 2024-02-23 14:21:41,575 [pN:main.1,p:78709,tN:Thread-2] Binding and starting galaxy control worker for main.1 +galaxy.queue_worker DEBUG 2024-02-23 14:21:41,587 [pN:main.1,p:78709,tN:Thread-2] Executing toolbox reload on 'main.1' +galaxy.util WARNING 2024-02-23 14:21:41,644 [pN:main.1,p:78709,tN:Thread-2] directory not found: /scratch/rico/galaxy/lib/galaxy/util/../../../config/plugins/activities +[2024-02-23 14:21:41 -0500] [78709] [INFO] Started server process [78709] +[2024-02-23 14:21:41 -0500] [78709] [INFO] Waiting for application startup. +[2024-02-23 14:21:41 -0500] [78709] [INFO] Application startup complete. +galaxy.tools WARNING 2024-02-23 14:21:41,668 [pN:main.1,p:78709,tN:Thread-2] The default shed tool config file (/tmp/tmpqrlh6ih1/shed_tool_conf.xml) has been added to the tool_config_file option, if this is not the desired behavior, please set shed_tool_config_file to your primary shed-enabled tool config file +galaxy.tool_util.toolbox.base INFO 2024-02-23 14:21:41,668 [pN:main.1,p:78709,tN:Thread-2] Parsing the tool configuration /tmp/tmpqrlh6ih1/tool_conf.xml +galaxy.tool_util.toolbox.base DEBUG 2024-02-23 14:21:41,669 [pN:main.1,p:78709,tN:Thread-2] Tool path for tool configuration /tmp/tmpqrlh6ih1/tool_conf.xml is None +galaxy.tools WARNING 2024-02-23 14:21:41,670 [pN:main.1,p:78709,tN:Thread-2] The default shed tool config file (/tmp/tmpqrlh6ih1/shed_tool_conf.xml) has been added to the tool_config_file option, if this is not the desired behavior, please set shed_tool_config_file to your primary shed-enabled tool config file +galaxy.tool_util.toolbox.base INFO 2024-02-23 14:21:41,670 [pN:main.1,p:78709,tN:Thread-2] Parsing the tool configuration /tmp/tmpqrlh6ih1/shed_tools_conf.xml +galaxy.model.database_heartbeat DEBUG 2024-02-23 14:21:41,678 [pN:main.1,p:78709,tN:database_heartbeart_main.1.thread] main.1 is config watcher +galaxy.tool_util.toolbox.base DEBUG 2024-02-23 14:21:41,679 [pN:main.1,p:78709,tN:Thread-2] Tool path for shed tool configuration /tmp/tmpqrlh6ih1/shed_tools_conf.xml is /tmp/tmpqrlh6ih1/shed_tools +galaxy.tools WARNING 2024-02-23 14:21:41,680 [pN:main.1,p:78709,tN:Thread-2] The default shed tool config file (/tmp/tmpqrlh6ih1/shed_tool_conf.xml) has been added to the tool_config_file option, if this is not the desired behavior, please set shed_tool_config_file to your primary shed-enabled tool config file +galaxy.tool_util.toolbox.base INFO 2024-02-23 14:21:41,680 [pN:main.1,p:78709,tN:Thread-2] Parsing the tool configuration /tmp/tmpqrlh6ih1/empty_tool_conf.xml +galaxy.tool_util.toolbox.base DEBUG 2024-02-23 14:21:41,683 [pN:main.1,p:78709,tN:Thread-2] Tool path for tool configuration /tmp/tmpqrlh6ih1/empty_tool_conf.xml is None +galaxy.tool_util.toolbox.base DEBUG 2024-02-23 14:21:41,684 [pN:main.1,p:78709,tN:Thread-2] Reading tools from config files finished (15.967 ms) +galaxy.tool_util.toolbox.base DEBUG 2024-02-23 14:21:41,684 [pN:main.1,p:78709,tN:Thread-2] Loaded tool id: upload1, version: 1.1.7 into tool panel.. +galaxy.tool_util.toolbox.base DEBUG 2024-02-23 14:21:41,684 [pN:main.1,p:78709,tN:Thread-2] Loading tool panel finished (0.472 ms) +galaxy.tool_util.toolbox.base DEBUG 2024-02-23 14:21:41,689 [pN:main.1,p:78709,tN:Thread-2] Loaded tool id: upload1, version: 1.1.7 into tool panel.. +galaxy.tool_util.toolbox.views.edam DEBUG 2024-02-23 14:21:41,690 [pN:main.1,p:78709,tN:Thread-2] Loading EDAM tool panel finished (5.481 ms) +galaxy.tool_util.toolbox.base DEBUG 2024-02-23 14:21:41,692 [pN:main.1,p:78709,tN:Thread-2] Loaded tool id: upload1, version: 1.1.7 into tool panel.. +galaxy.tool_util.toolbox.views.edam DEBUG 2024-02-23 14:21:41,692 [pN:main.1,p:78709,tN:Thread-2] Loading EDAM tool panel finished (1.670 ms) +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:41,692 [pN:main.1,p:78709,tN:Thread-2] Loaded converter: CONVERTER_uncompressed_to_gz +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:41,692 [pN:main.1,p:78709,tN:Thread-2] Loaded converter: CONVERTER_gz_to_uncompressed +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:41,693 [pN:main.1,p:78709,tN:Thread-2] Loaded converter: CONVERTER_uncompressed_to_gz +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:41,693 [pN:main.1,p:78709,tN:Thread-2] Loaded converter: CONVERTER_gz_to_uncompressed +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:41,693 [pN:main.1,p:78709,tN:Thread-2] Loaded converter: CONVERTER_uncompressed_to_gz +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:41,693 [pN:main.1,p:78709,tN:Thread-2] Loaded converter: CONVERTER_gz_to_uncompressed +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:41,693 [pN:main.1,p:78709,tN:Thread-2] Loaded converter: CONVERTER_Bam_Bai_0 +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:41,693 [pN:main.1,p:78709,tN:Thread-2] Loaded converter: CONVERTER_bam_to_bigwig_0 +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:41,693 [pN:main.1,p:78709,tN:Thread-2] Loaded converter: CONVERTER_bam_to_qname_sorted_bam +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:41,694 [pN:main.1,p:78709,tN:Thread-2] Loaded converter: CONVERTER_bam_to_bigwig_0 +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:41,694 [pN:main.1,p:78709,tN:Thread-2] Loaded converter: CONVERTER_bam_to_coodinate_sorted_bam +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:41,694 [pN:main.1,p:78709,tN:Thread-2] Loaded converter: CONVERTER_bam_to_qname_sorted_bam +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:41,694 [pN:main.1,p:78709,tN:Thread-2] Loaded converter: CONVERTER_cram_to_bam_0 +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:41,695 [pN:main.1,p:78709,tN:Thread-2] Loaded converter: CONVERTER_bed_to_gff_0 +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:41,695 [pN:main.1,p:78709,tN:Thread-2] Loaded converter: CONVERTER_interval_to_bgzip_0 +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:41,695 [pN:main.1,p:78709,tN:Thread-2] Loaded converter: CONVERTER_interval_to_tabix_0 +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:41,695 [pN:main.1,p:78709,tN:Thread-2] Loaded converter: CONVERTER_bed_gff_or_vcf_to_bigwig_0 +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:41,695 [pN:main.1,p:78709,tN:Thread-2] Loaded converter: CONVERTER_bed_to_fli_0 +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:41,696 [pN:main.1,p:78709,tN:Thread-2] Loaded converter: CONVERTER_bedgraph_to_bigwig +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:41,696 [pN:main.1,p:78709,tN:Thread-2] Loaded converter: CONVERTER_len_to_linecount +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:41,696 [pN:main.1,p:78709,tN:Thread-2] Loaded converter: CONVERTER_parquet_to_csv +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:41,696 [pN:main.1,p:78709,tN:Thread-2] Loaded converter: bigwigtowig +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:41,696 [pN:main.1,p:78709,tN:Thread-2] Loaded converter: CONVERTER_interval_to_bgzip_0 +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:41,696 [pN:main.1,p:78709,tN:Thread-2] Loaded converter: CONVERTER_interval_to_tabix_0 +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:41,706 [pN:main.1,p:78709,tN:Thread-2] Loaded converter: CONVERTER_bed_gff_or_vcf_to_bigwig_0 +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:41,706 [pN:main.1,p:78709,tN:Thread-2] Loaded converter: csv_to_tabular +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:41,707 [pN:main.1,p:78709,tN:Thread-2] Loaded converter: tabular_to_csv +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:41,707 [pN:main.1,p:78709,tN:Thread-2] Loaded converter: CONVERTER_fasta_to_tabular +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:41,707 [pN:main.1,p:78709,tN:Thread-2] Loaded converter: CONVERTER_fasta_to_bowtie_base_index +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:41,707 [pN:main.1,p:78709,tN:Thread-2] Loaded converter: CONVERTER_fasta_to_bowtie_color_index +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:41,707 [pN:main.1,p:78709,tN:Thread-2] Loaded converter: CONVERTER_fasta_to_2bit +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:41,707 [pN:main.1,p:78709,tN:Thread-2] Loaded converter: CONVERTER_fasta_to_len +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:41,707 [pN:main.1,p:78709,tN:Thread-2] Loaded converter: CONVERTER_fasta_to_fai +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:41,708 [pN:main.1,p:78709,tN:Thread-2] Loaded converter: CONVERTER_uncompressed_to_gz +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:41,708 [pN:main.1,p:78709,tN:Thread-2] Loaded converter: CONVERTER_gz_to_uncompressed +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:41,708 [pN:main.1,p:78709,tN:Thread-2] Loaded converter: CONVERTER_fastq_to_fqtoc0 +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:41,708 [pN:main.1,p:78709,tN:Thread-2] Loaded converter: CONVERTER_uncompressed_to_gz +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:41,708 [pN:main.1,p:78709,tN:Thread-2] Loaded converter: CONVERTER_gz_to_uncompressed +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:41,708 [pN:main.1,p:78709,tN:Thread-2] Loaded converter: CONVERTER_bz2_to_uncompressed +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:41,709 [pN:main.1,p:78709,tN:Thread-2] Loaded converter: CONVERTER_fastq_to_fqtoc0 +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:41,709 [pN:main.1,p:78709,tN:Thread-2] Loaded converter: CONVERTER_uncompressed_to_gz +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:41,709 [pN:main.1,p:78709,tN:Thread-2] Loaded converter: CONVERTER_gz_to_uncompressed +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:41,709 [pN:main.1,p:78709,tN:Thread-2] Loaded converter: CONVERTER_bz2_to_uncompressed +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:41,709 [pN:main.1,p:78709,tN:Thread-2] Loaded converter: CONVERTER_fastq_to_fqtoc0 +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:41,709 [pN:main.1,p:78709,tN:Thread-2] Loaded converter: CONVERTER_uncompressed_to_gz +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:41,709 [pN:main.1,p:78709,tN:Thread-2] Loaded converter: CONVERTER_gz_to_uncompressed +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:41,710 [pN:main.1,p:78709,tN:Thread-2] Loaded converter: CONVERTER_bz2_to_uncompressed +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:41,710 [pN:main.1,p:78709,tN:Thread-2] Loaded converter: CONVERTER_fastq_to_fqtoc0 +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:41,710 [pN:main.1,p:78709,tN:Thread-2] Loaded converter: CONVERTER_uncompressed_to_gz +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:41,710 [pN:main.1,p:78709,tN:Thread-2] Loaded converter: CONVERTER_gz_to_uncompressed +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:41,710 [pN:main.1,p:78709,tN:Thread-2] Loaded converter: CONVERTER_bz2_to_uncompressed +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:41,710 [pN:main.1,p:78709,tN:Thread-2] Loaded converter: CONVERTER_fastq_to_fqtoc0 +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:41,710 [pN:main.1,p:78709,tN:Thread-2] Loaded converter: CONVERTER_uncompressed_to_gz +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:41,710 [pN:main.1,p:78709,tN:Thread-2] Loaded converter: CONVERTER_gz_to_uncompressed +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:41,711 [pN:main.1,p:78709,tN:Thread-2] Loaded converter: CONVERTER_bz2_to_uncompressed +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:41,711 [pN:main.1,p:78709,tN:Thread-2] Loaded converter: CONVERTER_gff_to_bed_0 +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:41,711 [pN:main.1,p:78709,tN:Thread-2] Loaded converter: CONVERTER_gff_to_interval_index_0 +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:41,711 [pN:main.1,p:78709,tN:Thread-2] Loaded converter: CONVERTER_bed_gff_or_vcf_to_bigwig_0 +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:41,711 [pN:main.1,p:78709,tN:Thread-2] Loaded converter: CONVERTER_gff_to_fli_0 +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:41,712 [pN:main.1,p:78709,tN:Thread-2] Loaded converter: CONVERTER_interval_to_bgzip_0 +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:41,712 [pN:main.1,p:78709,tN:Thread-2] Loaded converter: CONVERTER_interval_to_tabix_0 +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:41,712 [pN:main.1,p:78709,tN:Thread-2] Loaded converter: CONVERTER_uncompressed_to_gz +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:41,712 [pN:main.1,p:78709,tN:Thread-2] Loaded converter: CONVERTER_gz_to_uncompressed +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:41,712 [pN:main.1,p:78709,tN:Thread-2] Loaded converter: CONVERTER_bz2_to_uncompressed +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:41,712 [pN:main.1,p:78709,tN:Thread-2] Loaded converter: CONVERTER_gff_to_interval_index_0 +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:41,713 [pN:main.1,p:78709,tN:Thread-2] Loaded converter: CONVERTER_bed_gff_or_vcf_to_bigwig_0 +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:41,713 [pN:main.1,p:78709,tN:Thread-2] Loaded converter: CONVERTER_interval_to_bed_0 +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:41,713 [pN:main.1,p:78709,tN:Thread-2] Loaded converter: CONVERTER_interval_to_bedstrict_0 +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:41,713 [pN:main.1,p:78709,tN:Thread-2] Loaded converter: CONVERTER_interval_to_bed6_0 +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:41,713 [pN:main.1,p:78709,tN:Thread-2] Loaded converter: CONVERTER_interval_to_bed12_0 +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:41,713 [pN:main.1,p:78709,tN:Thread-2] Loaded converter: CONVERTER_interval_to_bgzip_0 +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:41,713 [pN:main.1,p:78709,tN:Thread-2] Loaded converter: CONVERTER_interval_to_tabix_0 +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:41,713 [pN:main.1,p:78709,tN:Thread-2] Loaded converter: CONVERTER_interval_to_bigwig_0 +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:41,714 [pN:main.1,p:78709,tN:Thread-2] Loaded converter: CONVERTER_picard_interval_list_to_bed6 +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:41,714 [pN:main.1,p:78709,tN:Thread-2] Loaded converter: CONVERTER_tar_to_directory +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:41,714 [pN:main.1,p:78709,tN:Thread-2] Loaded converter: CONVERTER_uncompressed_to_gz +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:41,714 [pN:main.1,p:78709,tN:Thread-2] Loaded converter: CONVERTER_gz_to_uncompressed +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:41,714 [pN:main.1,p:78709,tN:Thread-2] Loaded converter: CONVERTER_uncompressed_to_gz +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:41,714 [pN:main.1,p:78709,tN:Thread-2] Loaded converter: CONVERTER_gz_to_uncompressed +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:41,714 [pN:main.1,p:78709,tN:Thread-2] Loaded converter: CONVERTER_uncompressed_to_gz +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:41,714 [pN:main.1,p:78709,tN:Thread-2] Loaded converter: CONVERTER_gz_to_uncompressed +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:41,715 [pN:main.1,p:78709,tN:Thread-2] Loaded converter: CONVERTER_maf_to_fasta_0 +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:41,715 [pN:main.1,p:78709,tN:Thread-2] Loaded converter: CONVERTER_maf_to_interval_0 +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:41,715 [pN:main.1,p:78709,tN:Thread-2] Loaded converter: CONVERTER_interval_to_tabix_0 +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:41,715 [pN:main.1,p:78709,tN:Thread-2] Loaded converter: CONVERTER_interval_to_bgzip_0 +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:41,715 [pN:main.1,p:78709,tN:Thread-2] Loaded converter: CONVERTER_bed_gff_or_vcf_to_bigwig_0 +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:41,716 [pN:main.1,p:78709,tN:Thread-2] Loaded converter: CONVERTER_interval_to_bgzip_0 +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:41,716 [pN:main.1,p:78709,tN:Thread-2] Loaded converter: CONVERTER_interval_to_tabix_0 +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:41,716 [pN:main.1,p:78709,tN:Thread-2] Loaded converter: CONVERTER_sam_to_unsorted_bam +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:41,716 [pN:main.1,p:78709,tN:Thread-2] Loaded converter: CONVERTER_bam_to_coodinate_sorted_bam +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:41,716 [pN:main.1,p:78709,tN:Thread-2] Loaded converter: CONVERTER_bam_to_qname_sorted_bam +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:41,716 [pN:main.1,p:78709,tN:Thread-2] Loaded converter: CONVERTER_sam_to_bigwig_0 +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:41,717 [pN:main.1,p:78709,tN:Thread-2] Loaded converter: tabular_to_dbnsfp +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:41,717 [pN:main.1,p:78709,tN:Thread-2] Loaded converter: tabular_to_csv +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:41,717 [pN:main.1,p:78709,tN:Thread-2] Loaded converter: CONVERTER_uncompressed_to_gz +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:41,717 [pN:main.1,p:78709,tN:Thread-2] Loaded converter: CONVERTER_gz_to_uncompressed +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:41,717 [pN:main.1,p:78709,tN:Thread-2] Loaded converter: CONVERTER_interval_to_bgzip_0 +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:41,717 [pN:main.1,p:78709,tN:Thread-2] Loaded converter: CONVERTER_vcf_to_vcf_bgzip_0 +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:41,718 [pN:main.1,p:78709,tN:Thread-2] Loaded converter: CONVERTER_interval_to_tabix_0 +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:41,718 [pN:main.1,p:78709,tN:Thread-2] Loaded converter: CONVERTER_bed_gff_or_vcf_to_bigwig_0 +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:41,718 [pN:main.1,p:78709,tN:Thread-2] Loaded converter: CONVERTER_uncompressed_to_gz +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:41,718 [pN:main.1,p:78709,tN:Thread-2] Loaded converter: CONVERTER_bcf_uncompressed_to_bcf +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:41,718 [pN:main.1,p:78709,tN:Thread-2] Loaded converter: CONVERTER_bcf_uncompressed_to_bcf +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:41,718 [pN:main.1,p:78709,tN:Thread-2] Loaded converter: CONVERTER_wig_to_bigwig +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:41,718 [pN:main.1,p:78709,tN:Thread-2] Loaded converter: CONVERTER_wiggle_to_interval_0 +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:41,718 [pN:main.1,p:78709,tN:Thread-2] Loaded converter: CONVERTER_vcf_bgzip_to_tabix_0 +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:41,719 [pN:main.1,p:78709,tN:Thread-2] Loaded converter: CONVERTER_gz_to_uncompressed +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:41,719 [pN:main.1,p:78709,tN:Thread-2] Loaded converter: lped2fpedconvert +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:41,719 [pN:main.1,p:78709,tN:Thread-2] Loaded converter: lped2pbedconvert +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:41,719 [pN:main.1,p:78709,tN:Thread-2] Loaded converter: pbed2lpedconvert +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:41,739 [pN:main.1,p:78709,tN:Thread-2] Loaded converter: pbed2ldindepconvert +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:41,739 [pN:main.1,p:78709,tN:Thread-2] Loaded converter: CONVERTER_uncompressed_to_gz +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:41,739 [pN:main.1,p:78709,tN:Thread-2] Loaded converter: CONVERTER_gz_to_uncompressed +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:41,739 [pN:main.1,p:78709,tN:Thread-2] Loaded converter: CONVERTER_biom +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:41,740 [pN:main.1,p:78709,tN:Thread-2] Loaded converter: CONVERTER_biom +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:41,740 [pN:main.1,p:78709,tN:Thread-2] Loaded converter: CONVERTER_molecules +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:41,740 [pN:main.1,p:78709,tN:Thread-2] Loaded converter: CONVERTER_molecules +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:41,740 [pN:main.1,p:78709,tN:Thread-2] Loaded converter: CONVERTER_molecules +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:41,740 [pN:main.1,p:78709,tN:Thread-2] Loaded converter: CONVERTER_SMILES_to_MOL +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:41,740 [pN:main.1,p:78709,tN:Thread-2] Loaded converter: CONVERTER_molecules +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:41,741 [pN:main.1,p:78709,tN:Thread-2] Loaded converter: CONVERTER_smiles_to_smiles +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:41,741 [pN:main.1,p:78709,tN:Thread-2] Loaded converter: CONVERTER_molecules +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:41,741 [pN:main.1,p:78709,tN:Thread-2] Loaded converter: CONVERTER_molecules +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:41,741 [pN:main.1,p:78709,tN:Thread-2] Loaded converter: CONVERTER_molecules +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:41,741 [pN:main.1,p:78709,tN:Thread-2] Loaded converter: CONVERTER_molecules +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:41,742 [pN:main.1,p:78709,tN:Thread-2] Loaded converter: CONVERTER_molecules +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:41,742 [pN:main.1,p:78709,tN:Thread-2] Loaded converter: CONVERTER_molecules +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:41,742 [pN:main.1,p:78709,tN:Thread-2] Loaded converter: CONVERTER_inchi_to_mol +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:41,742 [pN:main.1,p:78709,tN:Thread-2] Loaded converter: CONVERTER_molecules +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:41,742 [pN:main.1,p:78709,tN:Thread-2] Loaded converter: CONVERTER_molecules +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:41,742 [pN:main.1,p:78709,tN:Thread-2] Loaded converter: CONVERTER_molecules +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:41,743 [pN:main.1,p:78709,tN:Thread-2] Loaded converter: CONVERTER_molecules +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:41,743 [pN:main.1,p:78709,tN:Thread-2] Loaded converter: CONVERTER_molecules +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:41,743 [pN:main.1,p:78709,tN:Thread-2] Loaded converter: CONVERTER_molecules +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:41,743 [pN:main.1,p:78709,tN:Thread-2] Loaded converter: CONVERTER_molecules +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:41,743 [pN:main.1,p:78709,tN:Thread-2] Loaded converter: CONVERTER_molecules +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:41,743 [pN:main.1,p:78709,tN:Thread-2] Loaded converter: CONVERTER_molecules +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:41,744 [pN:main.1,p:78709,tN:Thread-2] Loaded converter: CONVERTER_molecules +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:41,744 [pN:main.1,p:78709,tN:Thread-2] Loaded converter: CONVERTER_mol2_to_mol +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:41,744 [pN:main.1,p:78709,tN:Thread-2] Loaded converter: CONVERTER_molecules +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:41,744 [pN:main.1,p:78709,tN:Thread-2] Loaded converter: CONVERTER_cml_to_smiles +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:41,744 [pN:main.1,p:78709,tN:Thread-2] Loaded converter: CONVERTER_molecules +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:41,744 [pN:main.1,p:78709,tN:Thread-2] Loaded converter: CONVERTER_molecules +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:41,745 [pN:main.1,p:78709,tN:Thread-2] Loaded converter: CONVERTER_molecules +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:41,745 [pN:main.1,p:78709,tN:Thread-2] Loaded converter: CONVERTER_Pdb_to_Gro_0 +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:41,745 [pN:main.1,p:78709,tN:Thread-2] Loaded converter: CONVERTER_mdconvert +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:41,745 [pN:main.1,p:78709,tN:Thread-2] Loaded converter: CONVERTER_mdconvert +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:41,745 [pN:main.1,p:78709,tN:Thread-2] Loaded converter: CONVERTER_mdconvert +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:41,745 [pN:main.1,p:78709,tN:Thread-2] Loaded converter: CONVERTER_mdconvert +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:41,746 [pN:main.1,p:78709,tN:Thread-2] Loaded converter: CONVERTER_mdconvert +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:41,746 [pN:main.1,p:78709,tN:Thread-2] Loaded converter: CONVERTER_mdconvert +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:41,746 [pN:main.1,p:78709,tN:Thread-2] Loaded converter: CONVERTER_Gro_to_Pdb_0 +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:41,746 [pN:main.1,p:78709,tN:Thread-2] Loaded converter: CONVERTER_ref_to_seq_taxomony +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:41,746 [pN:main.1,p:78709,tN:Thread-2] Loaded converter: CONVERTER_neostorezip_to_neostore +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:41,751 [pN:main.1,p:78709,tN:Thread-2] Loaded external metadata tool: __SET_METADATA__ +galaxy.tools.special_tools DEBUG 2024-02-23 14:21:41,753 [pN:main.1,p:78709,tN:Thread-2] Loaded history export tool: __EXPORT_HISTORY__ +galaxy.tools.special_tools DEBUG 2024-02-23 14:21:41,755 [pN:main.1,p:78709,tN:Thread-2] Loaded history export to uri tool: __EXPORT_HISTORY_TO_URI__ +galaxy.tools.special_tools DEBUG 2024-02-23 14:21:41,757 [pN:main.1,p:78709,tN:Thread-2] Loaded history import tool: __IMPORT_HISTORY__ +galaxy.tools.special_tools DEBUG 2024-02-23 14:21:41,761 [pN:main.1,p:78709,tN:Thread-2] Loaded data fetch tool: __DATA_FETCH__ +galaxy.queue_worker INFO 2024-02-23 14:21:41,761 [pN:main.1,p:78709,tN:Thread-2] Queuing async task rebuild_toolbox_search_index for main.1. +galaxy.queue_worker DEBUG 2024-02-23 14:21:41,781 [pN:main.1,p:78709,tN:Thread-2] Toolbox reload (193.942 ms) +galaxy.queue_worker INFO 2024-02-23 14:21:41,781 [pN:main.1,p:78709,tN:Thread-2] Queuing async task rebuild_toolbox_search_index for main.1. +galaxy.web_stack INFO 2024-02-23 14:21:41,792 [pN:main.1,p:78709,tN:Thread-2] Galaxy server instance 'main.1' is running +[92m +Serving on http://127.0.0.1:9090 +[0m +galaxy.queue_worker INFO 2024-02-23 14:21:42,781 [pN:main.1,p:78709,tN:Thread-1] Instance 'main.1' received 'rebuild_toolbox_search_index' task, executing now. +galaxy.tools.search DEBUG 2024-02-23 14:21:42,782 [pN:main.1,p:78709,tN:Thread-1] Starting to build toolbox index of panel default. +galaxy.tools.search DEBUG 2024-02-23 14:21:42,791 [pN:main.1,p:78709,tN:Thread-1] Toolbox index of panel default finished (9.312 ms) +galaxy.tools.search DEBUG 2024-02-23 14:21:42,791 [pN:main.1,p:78709,tN:Thread-1] Starting to build toolbox index of panel ontology:edam_operations. +galaxy.tools.search DEBUG 2024-02-23 14:21:42,795 [pN:main.1,p:78709,tN:Thread-1] Toolbox index of panel ontology:edam_operations finished (3.894 ms) +galaxy.tools.search DEBUG 2024-02-23 14:21:42,796 [pN:main.1,p:78709,tN:Thread-1] Starting to build toolbox index of panel ontology:edam_topics. +galaxy.tools.search DEBUG 2024-02-23 14:21:42,799 [pN:main.1,p:78709,tN:Thread-1] Toolbox index of panel ontology:edam_topics finished (3.529 ms) +galaxy.queue_worker INFO 2024-02-23 14:21:42,808 [pN:main.1,p:78709,tN:Thread-1] Instance 'main.1' received 'rebuild_toolbox_search_index' task, executing now. +galaxy.tools.search DEBUG 2024-02-23 14:21:42,808 [pN:main.1,p:78709,tN:Thread-1] Starting to build toolbox index of panel default. +galaxy.tools.search DEBUG 2024-02-23 14:21:42,811 [pN:main.1,p:78709,tN:Thread-1] Toolbox index of panel default finished (3.266 ms) +galaxy.tools.search DEBUG 2024-02-23 14:21:42,811 [pN:main.1,p:78709,tN:Thread-1] Starting to build toolbox index of panel ontology:edam_operations. +galaxy.tools.search DEBUG 2024-02-23 14:21:42,815 [pN:main.1,p:78709,tN:Thread-1] Toolbox index of panel ontology:edam_operations finished (3.321 ms) +galaxy.tools.search DEBUG 2024-02-23 14:21:42,815 [pN:main.1,p:78709,tN:Thread-1] Starting to build toolbox index of panel ontology:edam_topics. +galaxy.tools.search DEBUG 2024-02-23 14:21:42,818 [pN:main.1,p:78709,tN:Thread-1] Toolbox index of panel ontology:edam_topics finished (3.186 ms) +2024-02-23 14:21:45,822 INFO success: gunicorn entered RUNNING state, process has stayed up for > than 15 seconds (startsecs) + +==> /tmp/tmpqrlh6ih1/gravity/log/celery-beat.log <== +[2024-02-23 14:26:34,191: DEBUG/MainProcess] beat: Synchronizing schedule... +[2024-02-23 14:26:34,192: DEBUG/MainProcess] beat: Waking up in 5.00 minutes. + +==> /tmp/tmpqrlh6ih1/gravity/log/gunicorn.log <== +galaxy.webapps.base.webapp DEBUG 2024-02-23 14:29:47,081 [pN:main.1,p:78709,tN:WSGI_0] Received invalid session key '{secure_id}', setting a new session key +/scratch/rico/galaxy/lib/galaxy/managers/users.py:854: SAWarning: Dialect sqlite+pysqlite does *not* support Decimal objects natively, and SQLAlchemy must convert from floating point - rounding errors and other issues may occur. Please consider storing Decimal numbers as strings or integers on this platform for lossless storage. + return session.scalars(stmt).first() +/scratch/rico/galaxy/lib/galaxy/webapps/base/webapp.py:349: SAWarning: Dialect sqlite+pysqlite does *not* support Decimal objects natively, and SQLAlchemy must convert from floating point - rounding errors and other issues may occur. Please consider storing Decimal numbers as strings or integers on this platform for lossless storage. + if config.use_remote_user and self.galaxy_session.user.deleted: +uvicorn.access INFO 2024-02-23 14:29:47,290 [pN:main.1,p:78709,tN:MainThread] 127.0.0.1:51344 - "GET / HTTP/1.1" 200 +uvicorn.access INFO 2024-02-23 14:29:47,318 [pN:main.1,p:78709,tN:MainThread] 127.0.0.1:51344 - "GET /static/dist/base.css?v=1707855697000 HTTP/1.1" 200 +uvicorn.access INFO 2024-02-23 14:29:47,321 [pN:main.1,p:78709,tN:MainThread] 127.0.0.1:51360 - "GET /static/dist/analysis.bundled.js?v=1707855697000 HTTP/1.1" 200 +uvicorn.access INFO 2024-02-23 14:29:47,324 [pN:main.1,p:78709,tN:MainThread] 127.0.0.1:51352 - "GET /static/dist/libs.bundled.js?v=1707855697000 HTTP/1.1" 200 +uvicorn.access INFO 2024-02-23 14:29:48,282 [pN:main.1,p:78709,tN:MainThread] 127.0.0.1:51360 - "GET /api/webhooks HTTP/1.1" 200 +/scratch/rico/galaxy/lib/galaxy/managers/interactivetool.py:249: SAWarning: Coercing Subquery object into a select() for use in IN(); please pass a select() construct explicitly + stmt = select(InteractiveToolEntryPoint).where(InteractiveToolEntryPoint.job_id.in_(build_subquery())) +uvicorn.access INFO 2024-02-23 14:29:48,307 [pN:main.1,p:78709,tN:MainThread] 127.0.0.1:51376 - "GET /api/entry_points?running=true HTTP/1.1" 200 +uvicorn.access INFO 2024-02-23 14:29:48,325 [pN:main.1,p:78709,tN:MainThread] 127.0.0.1:51344 - "GET /api/configuration HTTP/1.1" 200 +uvicorn.access INFO 2024-02-23 14:29:48,341 [pN:main.1,p:78709,tN:MainThread] 127.0.0.1:51352 - "GET /api/users/current HTTP/1.1" 200 +uvicorn.access INFO 2024-02-23 14:29:48,385 [pN:main.1,p:78709,tN:MainThread] 127.0.0.1:51344 - "GET /api/webhooks HTTP/1.1" 200 +uvicorn.access INFO 2024-02-23 14:29:48,392 [pN:main.1,p:78709,tN:MainThread] 127.0.0.1:51352 - "GET /welcome HTTP/1.1" 302 +uvicorn.access INFO 2024-02-23 14:29:48,412 [pN:main.1,p:78709,tN:MainThread] 127.0.0.1:51376 - "GET /api/tool_panels HTTP/1.1" 200 +uvicorn.access INFO 2024-02-23 14:29:48,470 [pN:main.1,p:78709,tN:MainThread] 127.0.0.1:51376 - "GET /static/dist/base.css HTTP/1.1" 200 +uvicorn.access INFO 2024-02-23 14:29:48,474 [pN:main.1,p:78709,tN:MainThread] 127.0.0.1:51384 - "GET /favicon.ico HTTP/1.1" 404 +uvicorn.access INFO 2024-02-23 14:29:48,511 [pN:main.1,p:78709,tN:MainThread] 127.0.0.1:51344 - "GET /api/tools?in_panel=False HTTP/1.1" 200 +uvicorn.access INFO 2024-02-23 14:29:48,538 [pN:main.1,p:78709,tN:MainThread] 127.0.0.1:51352 - "GET /api/histories/count HTTP/1.1" 200 +/scratch/rico/galaxy/lib/galaxy/model/__init__.py:3318: SAWarning: Dialect sqlite+pysqlite does *not* support Decimal objects natively, and SQLAlchemy must convert from floating point - rounding errors and other issues may occur. Please consider storing Decimal numbers as strings or integers on this platform for lossless storage. + return object_session(self).scalar(stmt) or 0 +uvicorn.access INFO 2024-02-23 14:29:48,554 [pN:main.1,p:78709,tN:MainThread] 127.0.0.1:51360 - "GET /history/current_history_json HTTP/1.1" 200 +uvicorn.access INFO 2024-02-23 14:29:48,580 [pN:main.1,p:78709,tN:MainThread] 127.0.0.1:51352 - "GET /history/current_history_json HTTP/1.1" 200 +uvicorn.access INFO 2024-02-23 14:29:48,613 [pN:main.1,p:78709,tN:MainThread] 127.0.0.1:51360 - "GET /api/tool_panels/default HTTP/1.1" 200 +/scratch/rico/galaxy/lib/galaxy/managers/history_contents.py:232: SAWarning: Dialect sqlite+pysqlite does *not* support Decimal objects natively, and SQLAlchemy must convert from floating point - rounding errors and other issues may occur. Please consider storing Decimal numbers as strings or integers on this platform for lossless storage. + contents_results = self._union_of_contents_query(container, **kwargs).all() +uvicorn.access INFO 2024-02-23 14:29:48,687 [pN:main.1,p:78709,tN:MainThread] 127.0.0.1:51352 - "GET /api/histories?view=summary&order=update_time&offset=0&limit=10 HTTP/1.1" 200 +uvicorn.access INFO 2024-02-23 14:29:48,690 [pN:main.1,p:78709,tN:MainThread] 127.0.0.1:51344 - "GET /api/histories/e94ef2b25ec88be9/contents?v=dev&limit=1000&q=update_time-ge&qv=2024-02-23T19:29:47.782Z HTTP/1.1" 200 +uvicorn.access INFO 2024-02-23 14:29:48,740 [pN:main.1,p:78709,tN:MainThread] 127.0.0.1:51376 - "GET /api/datatypes?extension_only=false HTTP/1.1" 200 +uvicorn.access INFO 2024-02-23 14:29:48,800 [pN:main.1,p:78709,tN:MainThread] 127.0.0.1:51352 - "GET /static/dist/libs.bundled.js HTTP/1.1" 200 +uvicorn.access INFO 2024-02-23 14:29:48,871 [pN:main.1,p:78709,tN:MainThread] 127.0.0.1:51384 - "GET /api/genomes HTTP/1.1" 200 +uvicorn.access INFO 2024-02-23 14:29:48,872 [pN:main.1,p:78709,tN:MainThread] 127.0.0.1:51360 - "GET /api/histories/e94ef2b25ec88be9/contents?v=dev&order=hid&offset=0&limit=100&q=deleted&qv=false&q=visible&qv=true HTTP/1.1" 200 +uvicorn.access INFO 2024-02-23 14:29:48,898 [pN:main.1,p:78709,tN:MainThread] 127.0.0.1:51376 - "GET /api/users/e94ef2b25ec88be9 HTTP/1.1" 200 +uvicorn.access INFO 2024-02-23 14:29:48,903 [pN:main.1,p:78709,tN:MainThread] 127.0.0.1:51344 - "GET /api/histories/count HTTP/1.1" 200 +uvicorn.access INFO 2024-02-23 14:29:51,792 [pN:main.1,p:78709,tN:MainThread] 127.0.0.1:51390 - "GET /history/current_history_json?since=2024-02-23T19:29:48.000464 HTTP/1.1" 200 +uvicorn.access INFO 2024-02-23 14:29:54,822 [pN:main.1,p:78709,tN:MainThread] 127.0.0.1:51392 - "GET /history/current_history_json?since=2024-02-23T19:29:48.000464 HTTP/1.1" 200 +uvicorn.access INFO 2024-02-23 14:29:57,851 [pN:main.1,p:78709,tN:MainThread] 127.0.0.1:50962 - "GET /history/current_history_json?since=2024-02-23T19:29:48.000464 HTTP/1.1" 200 +uvicorn.access INFO 2024-02-23 14:29:58,400 [pN:main.1,p:78709,tN:MainThread] 127.0.0.1:50962 - "GET /api/entry_points?running=true HTTP/1.1" 200 +uvicorn.access INFO 2024-02-23 14:30:01,476 [pN:main.1,p:78709,tN:MainThread] 127.0.0.1:50964 - "GET /history/current_history_json?since=2024-02-23T19:29:48.000464 HTTP/1.1" 200 +uvicorn.access INFO 2024-02-23 14:30:04,843 [pN:main.1,p:78709,tN:MainThread] 127.0.0.1:50978 - "GET /history/current_history_json?since=2024-02-23T19:29:48.000464 HTTP/1.1" 200 +uvicorn.access INFO 2024-02-23 14:30:07,873 [pN:main.1,p:78709,tN:MainThread] 127.0.0.1:36628 - "GET /history/current_history_json?since=2024-02-23T19:29:48.000464 HTTP/1.1" 200 +uvicorn.access INFO 2024-02-23 14:30:08,404 [pN:main.1,p:78709,tN:MainThread] 127.0.0.1:36628 - "GET /api/entry_points?running=true HTTP/1.1" 200 +uvicorn.access INFO 2024-02-23 14:30:10,903 [pN:main.1,p:78709,tN:MainThread] 127.0.0.1:36636 - "GET /history/current_history_json?since=2024-02-23T19:29:48.000464 HTTP/1.1" 200 +uvicorn.access INFO 2024-02-23 14:30:13,934 [pN:main.1,p:78709,tN:MainThread] 127.0.0.1:36652 - "GET /history/current_history_json?since=2024-02-23T19:29:48.000464 HTTP/1.1" 200 +uvicorn.access INFO 2024-02-23 14:30:16,966 [pN:main.1,p:78709,tN:MainThread] 127.0.0.1:58278 - "GET /history/current_history_json?since=2024-02-23T19:29:48.000464 HTTP/1.1" 200 +uvicorn.access INFO 2024-02-23 14:30:18,407 [pN:main.1,p:78709,tN:MainThread] 127.0.0.1:58278 - "GET /api/entry_points?running=true HTTP/1.1" 200 +uvicorn.access INFO 2024-02-23 14:30:19,994 [pN:main.1,p:78709,tN:MainThread] 127.0.0.1:58278 - "GET /history/current_history_json?since=2024-02-23T19:29:48.000464 HTTP/1.1" 200 +uvicorn.access INFO 2024-02-23 14:30:23,026 [pN:main.1,p:78709,tN:MainThread] 127.0.0.1:58280 - "GET /history/current_history_json?since=2024-02-23T19:29:48.000464 HTTP/1.1" 200 +uvicorn.access INFO 2024-02-23 14:30:26,058 [pN:main.1,p:78709,tN:MainThread] 127.0.0.1:35382 - "GET /history/current_history_json?since=2024-02-23T19:29:48.000464 HTTP/1.1" 200 +uvicorn.access INFO 2024-02-23 14:30:28,411 [pN:main.1,p:78709,tN:MainThread] 127.0.0.1:35392 - "GET /api/entry_points?running=true HTTP/1.1" 200 +uvicorn.access INFO 2024-02-23 14:30:29,087 [pN:main.1,p:78709,tN:MainThread] 127.0.0.1:35392 - "GET /history/current_history_json?since=2024-02-23T19:29:48.000464 HTTP/1.1" 200 +uvicorn.access INFO 2024-02-23 14:30:32,119 [pN:main.1,p:78709,tN:MainThread] 127.0.0.1:35406 - "GET /history/current_history_json?since=2024-02-23T19:29:48.000464 HTTP/1.1" 200 +uvicorn.access INFO 2024-02-23 14:30:35,147 [pN:main.1,p:78709,tN:MainThread] 127.0.0.1:35418 - "GET /history/current_history_json?since=2024-02-23T19:29:48.000464 HTTP/1.1" 200 +uvicorn.access INFO 2024-02-23 14:30:38,178 [pN:main.1,p:78709,tN:MainThread] 127.0.0.1:50712 - "GET /history/current_history_json?since=2024-02-23T19:29:48.000464 HTTP/1.1" 200 +uvicorn.access INFO 2024-02-23 14:30:38,410 [pN:main.1,p:78709,tN:MainThread] 127.0.0.1:50712 - "GET /api/entry_points?running=true HTTP/1.1" 200 +uvicorn.access INFO 2024-02-23 14:30:41,207 [pN:main.1,p:78709,tN:MainThread] 127.0.0.1:50722 - "GET /history/current_history_json?since=2024-02-23T19:29:48.000464 HTTP/1.1" 200 +uvicorn.access INFO 2024-02-23 14:30:44,239 [pN:main.1,p:78709,tN:MainThread] 127.0.0.1:50732 - "GET /history/current_history_json?since=2024-02-23T19:29:48.000464 HTTP/1.1" 200 +uvicorn.access INFO 2024-02-23 14:30:47,270 [pN:main.1,p:78709,tN:MainThread] 127.0.0.1:46500 - "GET /history/current_history_json?since=2024-02-23T19:29:48.000464 HTTP/1.1" 200 +uvicorn.access INFO 2024-02-23 14:30:48,415 [pN:main.1,p:78709,tN:MainThread] 127.0.0.1:46500 - "GET /api/entry_points?running=true HTTP/1.1" 200 +uvicorn.access INFO 2024-02-23 14:30:50,299 [pN:main.1,p:78709,tN:MainThread] 127.0.0.1:46500 - "GET /history/current_history_json?since=2024-02-23T19:29:48.000464 HTTP/1.1" 200 +uvicorn.access INFO 2024-02-23 14:30:53,329 [pN:main.1,p:78709,tN:MainThread] 127.0.0.1:46514 - "GET /history/current_history_json?since=2024-02-23T19:29:48.000464 HTTP/1.1" 200 +uvicorn.access INFO 2024-02-23 14:30:56,356 [pN:main.1,p:78709,tN:MainThread] 127.0.0.1:49334 - "GET /history/current_history_json?since=2024-02-23T19:29:48.000464 HTTP/1.1" 200 +uvicorn.access INFO 2024-02-23 14:30:57,485 [pN:main.1,p:78709,tN:MainThread] 127.0.0.1:49334 - "POST /api/upload/resumable_upload/ HTTP/1.1" 201 +uvicorn.access INFO 2024-02-23 14:30:57,537 [pN:main.1,p:78709,tN:MainThread] 127.0.0.1:49334 - "PATCH /api/upload/resumable_upload/4d30abe413ab43b280d920f7dea4f47e HTTP/1.1" 204 +galaxy.tools INFO 2024-02-23 14:30:57,574 [pN:main.1,p:78709,tN:MainThread] Validated and populated state for tool request (1.213 ms) +galaxy.tools.actions.upload DEBUG 2024-02-23 14:30:57,582 [pN:main.1,p:78709,tN:MainThread] Persisted uploads (0.058 ms) +galaxy.tools.actions.upload DEBUG 2024-02-23 14:30:57,655 [pN:main.1,p:78709,tN:MainThread] Created upload job (5.150 ms) +galaxy.tools.execute DEBUG 2024-02-23 14:30:57,655 [pN:main.1,p:78709,tN:MainThread] Tool __DATA_FETCH__ created job None (73.168 ms) +galaxy.web_stack.handlers INFO 2024-02-23 14:30:57,676 [pN:main.1,p:78709,tN:MainThread] (Job[id=1,tool_id=__DATA_FETCH__]) Handler '_default_' assigned using 'HANDLER_ASSIGNMENT_METHODS.DB_SKIP_LOCKED' assignment method +galaxy.tools.execute DEBUG 2024-02-23 14:30:57,680 [pN:main.1,p:78709,tN:MainThread] Created 1 job(s) for tool __DATA_FETCH__ request (106.727 ms) +uvicorn.access INFO 2024-02-23 14:30:57,694 [pN:main.1,p:78709,tN:MainThread] 127.0.0.1:49334 - "POST /api/tools/fetch HTTP/1.1" 200 +uvicorn.access INFO 2024-02-23 14:30:58,416 [pN:main.1,p:78709,tN:MainThread] 127.0.0.1:49334 - "GET /api/entry_points?running=true HTTP/1.1" 200 +galaxy.jobs.mapper DEBUG 2024-02-23 14:30:58,477 [pN:main.1,p:78709,tN:JobHandlerQueue.monitor_thread] (1) Mapped job to destination id: docker_local +galaxy.jobs.handler DEBUG 2024-02-23 14:30:58,492 [pN:main.1,p:78709,tN:JobHandlerQueue.monitor_thread] (1) Dispatching to local runner +galaxy.jobs DEBUG 2024-02-23 14:30:58,503 [pN:main.1,p:78709,tN:JobHandlerQueue.monitor_thread] (1) Persisting job destination (destination id: docker_local) +galaxy.jobs DEBUG 2024-02-23 14:30:58,530 [pN:main.1,p:78709,tN:JobHandlerQueue.monitor_thread] (1) Working directory for job is: /tmp/tmpqrlh6ih1/job_working_directory/000/1 +galaxy.jobs.runners DEBUG 2024-02-23 14:30:58,541 [pN:main.1,p:78709,tN:JobHandlerQueue.monitor_thread] Job [1] queued (48.588 ms) +galaxy.jobs.handler INFO 2024-02-23 14:30:58,552 [pN:main.1,p:78709,tN:JobHandlerQueue.monitor_thread] (1) Job dispatched +galaxy.jobs DEBUG 2024-02-23 14:30:58,674 [pN:main.1,p:78709,tN:LocalRunner.work_thread-3] Job wrapper for Job [1] prepared (102.072 ms) +galaxy.tool_util.deps.containers INFO 2024-02-23 14:30:58,675 [pN:main.1,p:78709,tN:LocalRunner.work_thread-3] Checking with container resolver [ExplicitContainerResolver[]] found description [None] +galaxy.tool_util.deps.containers INFO 2024-02-23 14:30:58,675 [pN:main.1,p:78709,tN:LocalRunner.work_thread-3] Checking with container resolver [CachedMulledDockerContainerResolver[namespace=biocontainers]] found description [None] +galaxy.tool_util.deps.containers INFO 2024-02-23 14:30:58,675 [pN:main.1,p:78709,tN:LocalRunner.work_thread-3] Checking with container resolver [CachedMulledDockerContainerResolver[namespace=local]] found description [None] +galaxy.tool_util.deps.containers INFO 2024-02-23 14:30:58,675 [pN:main.1,p:78709,tN:LocalRunner.work_thread-3] Checking with container resolver [MulledDockerContainerResolver[namespace=biocontainers]] found description [None] +galaxy.tool_util.deps.containers INFO 2024-02-23 14:30:58,675 [pN:main.1,p:78709,tN:LocalRunner.work_thread-3] Checking with container resolver [BuildDockerContainerResolver[namespace=local]] found description [None] +galaxy.jobs.command_factory INFO 2024-02-23 14:30:58,706 [pN:main.1,p:78709,tN:LocalRunner.work_thread-3] Built script [/tmp/tmpqrlh6ih1/job_working_directory/000/1/tool_script.sh] for tool command [python '/scratch/rico/galaxy/lib/galaxy/tools/data_fetch.py' --galaxy-root '/scratch/rico/galaxy' --datatypes-registry '/tmp/tmpqrlh6ih1/job_working_directory/000/1/registry.xml' --request-version '1' --request '/tmp/tmpqrlh6ih1/job_working_directory/000/1/configs/tmpnmy96xuh'] +galaxy.jobs.runners DEBUG 2024-02-23 14:30:58,757 [pN:main.1,p:78709,tN:LocalRunner.work_thread-3] (1) command is: mkdir -p working outputs configs +if [ -d _working ]; then + rm -rf working/ outputs/ configs/; cp -R _working working; cp -R _outputs outputs; cp -R _configs configs +else + cp -R working _working; cp -R outputs _outputs; cp -R configs _configs +fi +cd working; /bin/bash /tmp/tmpqrlh6ih1/job_working_directory/000/1/tool_script.sh > '../outputs/tool_stdout' 2> '../outputs/tool_stderr'; return_code=$?; echo $return_code > /tmp/tmpqrlh6ih1/job_working_directory/000/1/galaxy_1.ec; cd '/tmp/tmpqrlh6ih1/job_working_directory/000/1'; +[ "$GALAXY_VIRTUAL_ENV" = "None" ] && GALAXY_VIRTUAL_ENV="$_GALAXY_VIRTUAL_ENV"; _galaxy_setup_environment True; python metadata/set.py; sh -c "exit $return_code" +galaxy.jobs.runners.local DEBUG 2024-02-23 14:30:58,781 [pN:main.1,p:78709,tN:LocalRunner.work_thread-3] (1) executing job script: /tmp/tmpqrlh6ih1/job_working_directory/000/1/galaxy_1.sh +uvicorn.access INFO 2024-02-23 14:30:59,399 [pN:main.1,p:78709,tN:MainThread] 127.0.0.1:49334 - "GET /history/current_history_json?since=2024-02-23T19:29:48.000464 HTTP/1.1" 200 +uvicorn.access INFO 2024-02-23 14:30:59,459 [pN:main.1,p:78709,tN:MainThread] 127.0.0.1:49334 - "GET /api/histories/e94ef2b25ec88be9/contents?v=dev&limit=1000&q=update_time-ge&qv=2024-02-23T19:29:48.589Z HTTP/1.1" 200 +uvicorn.access INFO 2024-02-23 14:30:59,535 [pN:main.1,p:78709,tN:MainThread] 127.0.0.1:49334 - "GET /api/users/e94ef2b25ec88be9 HTTP/1.1" 200 +uvicorn.access INFO 2024-02-23 14:30:59,564 [pN:main.1,p:78709,tN:MainThread] 127.0.0.1:49344 - "GET /api/histories/e94ef2b25ec88be9/contents?v=dev&order=hid&offset=0&limit=100&q=deleted&qv=false&q=visible&qv=true HTTP/1.1" 200 +uvicorn.access INFO 2024-02-23 14:31:02,523 [pN:main.1,p:78709,tN:MainThread] 127.0.0.1:49346 - "GET /history/current_history_json?since=2024-02-23T19:30:58.000828 HTTP/1.1" 200 +galaxy.jobs.runners.util.process_groups DEBUG 2024-02-23 14:31:05,073 [pN:main.1,p:78709,tN:LocalRunner.work_thread-3] check_pg(): No process found in process group 78818 +galaxy.jobs.runners.local DEBUG 2024-02-23 14:31:05,073 [pN:main.1,p:78709,tN:LocalRunner.work_thread-3] execution finished: /tmp/tmpqrlh6ih1/job_working_directory/000/1/galaxy_1.sh +galaxy.jobs DEBUG 2024-02-23 14:31:05,098 [pN:main.1,p:78709,tN:LocalRunner.work_thread-3] finish(): Moved /tmp/tmpqrlh6ih1/job_working_directory/000/1/outputs/dataset_b25039b4-189c-4c5a-9380-009d996fbf23.dat to /tmp/tmpqrlh6ih1/files/b/2/5/dataset_b25039b4-189c-4c5a-9380-009d996fbf23.dat +galaxy.tool_util.provided_metadata DEBUG 2024-02-23 14:31:05,104 [pN:main.1,p:78709,tN:LocalRunner.work_thread-3] unnamed outputs [{'__unnamed_outputs': [{'destination': {'type': 'hdas'}, 'elements': [{'name': 'fcsadaptor_prok_test.fa.gz', 'dbkey': '?', 'ext': 'fasta.gz', 'link_data_only': False, 'sources': [], 'hashes': [], 'info': 'uploaded fasta.gz file', 'state': 'ok', 'filename': '/tmp/tmpqrlh6ih1/job_working_directory/000/1/working/gxupload_0', 'object_id': 1}]}]}] +galaxy.jobs DEBUG 2024-02-23 14:31:05,242 [pN:main.1,p:78709,tN:LocalRunner.work_thread-3] job_wrapper.finish for job 1 executed (150.364 ms) +uvicorn.access INFO 2024-02-23 14:31:05,558 [pN:main.1,p:78709,tN:MainThread] 127.0.0.1:49360 - "GET /history/current_history_json?since=2024-02-23T19:30:58.000828 HTTP/1.1" 200 +uvicorn.access INFO 2024-02-23 14:31:05,603 [pN:main.1,p:78709,tN:MainThread] 127.0.0.1:49360 - "GET /api/histories/e94ef2b25ec88be9/contents?v=dev&limit=1000&q=update_time-ge&qv=2024-02-23T19:30:59.408Z HTTP/1.1" 200 +uvicorn.access INFO 2024-02-23 14:31:05,655 [pN:main.1,p:78709,tN:MainThread] 127.0.0.1:49360 - "GET /api/users/e94ef2b25ec88be9 HTTP/1.1" 200 +uvicorn.access INFO 2024-02-23 14:31:05,682 [pN:main.1,p:78709,tN:MainThread] 127.0.0.1:49370 - "GET /api/histories/e94ef2b25ec88be9/contents?v=dev&order=hid&offset=0&limit=100&q=deleted&qv=false&q=visible&qv=true HTTP/1.1" 200 +uvicorn.access INFO 2024-02-23 14:31:08,420 [pN:main.1,p:78709,tN:MainThread] 127.0.0.1:54894 - "GET /api/entry_points?running=true HTTP/1.1" 200 +uvicorn.access INFO 2024-02-23 14:31:08,654 [pN:main.1,p:78709,tN:MainThread] 127.0.0.1:54894 - "GET /history/current_history_json?since=2024-02-23T19:31:05.000216 HTTP/1.1" 200 +uvicorn.access INFO 2024-02-23 14:31:11,688 [pN:main.1,p:78709,tN:MainThread] 127.0.0.1:54896 - "GET /history/current_history_json?since=2024-02-23T19:31:05.000216 HTTP/1.1" 200 +uvicorn.access INFO 2024-02-23 14:31:14,719 [pN:main.1,p:78709,tN:MainThread] 127.0.0.1:54910 - "GET /history/current_history_json?since=2024-02-23T19:31:05.000216 HTTP/1.1" 200 +uvicorn.access INFO 2024-02-23 14:31:17,748 [pN:main.1,p:78709,tN:MainThread] 127.0.0.1:34476 - "GET /history/current_history_json?since=2024-02-23T19:31:05.000216 HTTP/1.1" 200 +uvicorn.access INFO 2024-02-23 14:31:18,420 [pN:main.1,p:78709,tN:MainThread] 127.0.0.1:34476 - "GET /api/entry_points?running=true HTTP/1.1" 200 +uvicorn.access INFO 2024-02-23 14:31:20,799 [pN:main.1,p:78709,tN:MainThread] 127.0.0.1:34488 - "GET /history/current_history_json?since=2024-02-23T19:31:05.000216 HTTP/1.1" 200 +uvicorn.access INFO 2024-02-23 14:31:23,827 [pN:main.1,p:78709,tN:MainThread] 127.0.0.1:34494 - "GET /history/current_history_json?since=2024-02-23T19:31:05.000216 HTTP/1.1" 200 +uvicorn.access INFO 2024-02-23 14:31:26,858 [pN:main.1,p:78709,tN:MainThread] 127.0.0.1:33276 - "GET /history/current_history_json?since=2024-02-23T19:31:05.000216 HTTP/1.1" 200 +uvicorn.access INFO 2024-02-23 14:31:28,420 [pN:main.1,p:78709,tN:MainThread] 127.0.0.1:33276 - "GET /api/entry_points?running=true HTTP/1.1" 200 +uvicorn.access INFO 2024-02-23 14:31:29,887 [pN:main.1,p:78709,tN:MainThread] 127.0.0.1:33276 - "GET /history/current_history_json?since=2024-02-23T19:31:05.000216 HTTP/1.1" 200 +uvicorn.access INFO 2024-02-23 14:31:32,919 [pN:main.1,p:78709,tN:MainThread] 127.0.0.1:33290 - "GET /history/current_history_json?since=2024-02-23T19:31:05.000216 HTTP/1.1" 200 + +==> /tmp/tmpqrlh6ih1/gravity/log/celery-beat.log <== +[2024-02-23 14:31:34,086: DEBUG/MainProcess] beat: Synchronizing schedule... +[2024-02-23 14:31:34,099: INFO/MainProcess] Scheduler: Sending due task clean-object-store-caches (galaxy.clean_object_store_caches) +[2024-02-23 14:31:34,141: DEBUG/MainProcess] galaxy.clean_object_store_caches sent. id->0cd32a96-9d0e-4f4d-9772-212740dc8b8c +[2024-02-23 14:31:34,142: DEBUG/MainProcess] beat: Waking up in 5.00 minutes. + +==> /tmp/tmpqrlh6ih1/gravity/log/celery.log <== +[2024-02-23 14:31:35,137: INFO/MainProcess] Task galaxy.clean_object_store_caches[0cd32a96-9d0e-4f4d-9772-212740dc8b8c] received +[2024-02-23 14:31:35,137: DEBUG/MainProcess] TaskPool: Apply <function fast_trace_task at 0x7f9f1756ed90> (args:('galaxy.clean_object_store_caches', '0cd32a96-9d0e-4f4d-9772-212740dc8b8c', {'lang': 'py', 'task': 'galaxy.clean_object_store_caches', 'id': '0cd32a96-9d0e-4f4d-9772-212740dc8b8c', 'shadow': None, 'eta': None, 'expires': None, 'group': None, 'group_index': None, 'retries': 0, 'timelimit': [None, None], 'root_id': '0cd32a96-9d0e-4f4d-9772-212740dc8b8c', 'parent_id': None, 'argsrepr': '()', 'kwargsrepr': '{}', 'origin': 'gen78504@laila', 'ignore_result': False, 'properties': {'correlation_id': '0cd32a96-9d0e-4f4d-9772-212740dc8b8c', 'reply_to': 'a834fe8d-fc9c-31a2-9791-be846a6fc4af', 'delivery_mode': 2, 'delivery_info': {'exchange': '', 'routing_key': 'galaxy.internal'}, 'priority': 0, 'body_encoding': 'base64', 'delivery_tag': '00442f4c-cdc1-41fb-b9c9-cf8c0d8ac151'}, 'reply_to': 'a834fe8d-fc9c-31a2-9791-be846a6fc4af', 'correlation_id': '0cd32a96-9d0e-4f4d-9772-212740dc8b8c', 'hostname': 'celery@laila', 'delivery_info': {'exchange': '', 'routing_key': 'galaxy.internal', 'priority': 0, 'redelivered': None},... kwargs:{}) +[2024-02-23 14:31:35,529: DEBUG/MainProcess] python path is: /scratch/rico/.planemo/gx_venv_3/bin, /scratch/rico/galaxy/lib, /usr/lib/python37.zip, /usr/lib/python3.7, /usr/lib/python3.7/lib-dynload, /scratch/rico/.planemo/gx_venv_3/lib/python3.7/site-packages +[2024-02-23 14:31:35,530: DEBUG/MainProcess] Configuration directory is /tmp/tmpqrlh6ih1 +[2024-02-23 14:31:35,530: DEBUG/MainProcess] Data directory is /scratch/rico/galaxy/database +[2024-02-23 14:31:35,530: DEBUG/MainProcess] Managed config directory is /tmp/tmpqrlh6ih1 +[2024-02-23 14:31:35,559: WARNING/MainProcess] Option master_api_key has been deprecated in favor of bootstrap_admin_api_key +[2024-02-23 14:31:35,560: DEBUG/MainProcess] No extra version JSON file detected at /scratch/rico/galaxy/version.json +[2024-02-23 14:31:35,561: WARNING/MainProcess] No corresponding location name exists for location code: . +[2024-02-23 14:31:35,561: INFO/MainProcess] Using global default values for location name and carbon intensity... +[2024-02-23 14:31:35,563: INFO/MainProcess] Install database targeting Galaxy's database configuration. +[2024-02-23 14:31:35,566: DEBUG/main] WeblessApplicationStack initialized +[2024-02-23 14:31:35,570: DEBUG/main] Loading job configuration from /scratch/rico/galaxytools/tools/ncbi_fcs_adaptor/planemo_job_conf.xml +[2024-02-23 14:31:35,570: DEBUG/main] Read job configuration from file: /scratch/rico/galaxytools/tools/ncbi_fcs_adaptor/planemo_job_conf.xml +[2024-02-23 14:31:35,580: INFO/main] JobConfiguration: No job handler assignment method is set, defaulting to 'HANDLER_ASSIGNMENT_METHODS.DB_SKIP_LOCKED', set the `assign_with` attribute on <handlers> to override the default +[2024-02-23 14:31:35,580: INFO/main] Job handler assignment methods set to: db-skip-locked +[2024-02-23 14:31:35,581: DEBUG/main] default set to child with id or tag 'docker_local' +[2024-02-23 14:31:35,581: DEBUG/main] Done loading job configuration +[2024-02-23 14:31:35,770: WARNING/main] No vault configured. We recommend defining the vault_config_file setting in galaxy.yml + +==> /tmp/tmpqrlh6ih1/gravity/log/gunicorn.log <== +uvicorn.access INFO 2024-02-23 14:31:35,947 [pN:main.1,p:78709,tN:MainThread] 127.0.0.1:59038 - "GET /history/current_history_json?since=2024-02-23T19:31:05.000216 HTTP/1.1" 200 + +==> /tmp/tmpqrlh6ih1/gravity/log/celery.log <== +[2024-02-23 14:31:36,006: DEBUG/main] Loading datatypes from /scratch/rico/galaxy/lib/galaxy/config/sample/datatypes_conf.xml.sample +[2024-02-23 14:31:36,007: DEBUG/main] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension source.h. +[2024-02-23 14:31:36,007: DEBUG/main] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension source.c. +[2024-02-23 14:31:36,007: DEBUG/main] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension source.cpp. +[2024-02-23 14:31:36,007: DEBUG/main] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension source.py. +[2024-02-23 14:31:36,007: DEBUG/main] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension source.go. +[2024-02-23 14:31:36,007: DEBUG/main] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension source.rs. +[2024-02-23 14:31:36,008: DEBUG/main] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension source.cs. +[2024-02-23 14:31:36,008: DEBUG/main] Retrieved datatype module galaxy.datatypes.binary:Binary from the datatype registry for extension hep.root. +[2024-02-23 14:31:36,008: DEBUG/main] Retrieved datatype module galaxy.datatypes.binary:JP2 from the datatype registry for extension jp2. +[2024-02-23 14:31:36,008: DEBUG/main] Retrieved datatype module galaxy.datatypes.binary:Ab1 from the datatype registry for extension ab1. +[2024-02-23 14:31:36,009: DEBUG/main] Retrieved datatype module galaxy.datatypes.assembly:Amos from the datatype registry for extension afg. +[2024-02-23 14:31:36,009: DEBUG/main] Retrieved datatype module galaxy.datatypes.goldenpath:GoldenPath from the datatype registry for extension agp. +[2024-02-23 14:31:36,010: DEBUG/main] Retrieved datatype module galaxy.datatypes.anvio:AnvioComposite from the datatype registry for extension anvio_cog_profile. +[2024-02-23 14:31:36,010: DEBUG/main] Retrieved datatype module galaxy.datatypes.anvio:AnvioComposite from the datatype registry for extension anvio_composite. +[2024-02-23 14:31:36,010: DEBUG/main] Retrieved datatype module galaxy.datatypes.data:Data from the datatype registry for extension anvio_classifier. +[2024-02-23 14:31:36,011: DEBUG/main] Retrieved datatype module galaxy.datatypes.anvio:AnvioContigsDB from the datatype registry for extension anvio_contigs_db. +[2024-02-23 14:31:36,011: DEBUG/main] Retrieved datatype module galaxy.datatypes.anvio:AnvioDB from the datatype registry for extension anvio_db. +[2024-02-23 14:31:36,011: DEBUG/main] Retrieved datatype module galaxy.datatypes.anvio:AnvioGenomesDB from the datatype registry for extension anvio_genomes_db. +[2024-02-23 14:31:36,011: DEBUG/main] Retrieved datatype module galaxy.datatypes.anvio:AnvioPanDB from the datatype registry for extension anvio_pan_db. +[2024-02-23 14:31:36,011: DEBUG/main] Retrieved datatype module galaxy.datatypes.anvio:AnvioComposite from the datatype registry for extension anvio_pfam_profile. +[2024-02-23 14:31:36,011: DEBUG/main] Retrieved datatype module galaxy.datatypes.anvio:AnvioProfileDB from the datatype registry for extension anvio_profile_db. +[2024-02-23 14:31:36,011: DEBUG/main] Retrieved datatype module galaxy.datatypes.anvio:AnvioSamplesDB from the datatype registry for extension anvio_samples_db. +[2024-02-23 14:31:36,011: DEBUG/main] Retrieved datatype module galaxy.datatypes.text:Json from the datatype registry for extension anvio_state. +[2024-02-23 14:31:36,011: DEBUG/main] Retrieved datatype module galaxy.datatypes.anvio:AnvioStructureDB from the datatype registry for extension anvio_structure_db. +[2024-02-23 14:31:36,011: DEBUG/main] Retrieved datatype module galaxy.datatypes.tabular:TSV from the datatype registry for extension anvio_variability. +[2024-02-23 14:31:36,011: DEBUG/main] Retrieved datatype module galaxy.datatypes.text:Arff from the datatype registry for extension arff. +[2024-02-23 14:31:36,012: DEBUG/main] Retrieved datatype module galaxy.datatypes.text:Paf from the datatype registry for extension paf. +[2024-02-23 14:31:36,012: DEBUG/main] Retrieved datatype module galaxy.datatypes.text:Gfa1 from the datatype registry for extension gfa1. +[2024-02-23 14:31:36,012: DEBUG/main] Retrieved datatype module galaxy.datatypes.text:Gfa2 from the datatype registry for extension gfa2. +[2024-02-23 14:31:36,012: DEBUG/main] Retrieved datatype module galaxy.datatypes.data:GenericAsn1 from the datatype registry for extension asn1. +[2024-02-23 14:31:36,012: DEBUG/main] Retrieved datatype module galaxy.datatypes.binary:GenericAsn1Binary from the datatype registry for extension asn1-binary. +[2024-02-23 14:31:36,012: DEBUG/main] Retrieved datatype module galaxy.datatypes.sequence:Axt from the datatype registry for extension axt. +[2024-02-23 14:31:36,012: DEBUG/main] Retrieved datatype module galaxy.datatypes.tabular:FeatureLocationIndex from the datatype registry for extension fli. +[2024-02-23 14:31:36,012: DEBUG/main] Retrieved datatype module galaxy.datatypes.binary:Bam from the datatype registry for extension bam. +[2024-02-23 14:31:36,012: DEBUG/main] Retrieved datatype module galaxy.datatypes.binary:Binary from the datatype registry for extension bai. +[2024-02-23 14:31:36,012: DEBUG/main] Retrieved datatype module galaxy.datatypes.binary:BamInputSorted from the datatype registry for extension qname_input_sorted.bam. +[2024-02-23 14:31:36,013: DEBUG/main] Retrieved datatype module galaxy.datatypes.binary:BamQuerynameSorted from the datatype registry for extension qname_sorted.bam. +[2024-02-23 14:31:36,013: DEBUG/main] Retrieved datatype module galaxy.datatypes.binary:BamNative from the datatype registry for extension unsorted.bam. +[2024-02-23 14:31:36,013: DEBUG/main] Retrieved datatype module galaxy.datatypes.binary:ProBam from the datatype registry for extension probam. +[2024-02-23 14:31:36,013: DEBUG/main] Retrieved datatype module galaxy.datatypes.binary:CRAM from the datatype registry for extension cram. +[2024-02-23 14:31:36,013: DEBUG/main] Retrieved datatype module galaxy.datatypes.interval:Bed from the datatype registry for extension bed. +[2024-02-23 14:31:36,013: DEBUG/main] Retrieved datatype module galaxy.datatypes.interval:BedGraph from the datatype registry for extension bedgraph. +[2024-02-23 14:31:36,013: DEBUG/main] Retrieved datatype module galaxy.datatypes.interval:BedStrict from the datatype registry for extension bedstrict. +[2024-02-23 14:31:36,013: DEBUG/main] Retrieved datatype module galaxy.datatypes.interval:Bed6 from the datatype registry for extension bed6. +[2024-02-23 14:31:36,013: DEBUG/main] Retrieved datatype module galaxy.datatypes.interval:Bed12 from the datatype registry for extension bed12. +[2024-02-23 14:31:36,014: DEBUG/main] Retrieved datatype module galaxy.datatypes.interval:ProBed from the datatype registry for extension probed. +[2024-02-23 14:31:36,014: DEBUG/main] Retrieved datatype module galaxy.datatypes.chrominfo:ChromInfo from the datatype registry for extension len. +[2024-02-23 14:31:36,014: DEBUG/main] Retrieved datatype module galaxy.datatypes.binary:DAA from the datatype registry for extension daa. +[2024-02-23 14:31:36,014: DEBUG/main] Retrieved datatype module galaxy.datatypes.binary:RMA6 from the datatype registry for extension rma6. +[2024-02-23 14:31:36,014: DEBUG/main] Retrieved datatype module galaxy.datatypes.binary:DMND from the datatype registry for extension dmnd. +[2024-02-23 14:31:36,014: DEBUG/main] Retrieved datatype module galaxy.datatypes.binary:Parquet from the datatype registry for extension parquet. +[2024-02-23 14:31:36,014: DEBUG/main] Retrieved datatype module galaxy.datatypes.binary:Idat from the datatype registry for extension idat. +[2024-02-23 14:31:36,014: DEBUG/main] Retrieved datatype module galaxy.datatypes.binary:BigBed from the datatype registry for extension bigbed. +[2024-02-23 14:31:36,014: DEBUG/main] Retrieved datatype module galaxy.datatypes.binary:BigWig from the datatype registry for extension bigwig. +[2024-02-23 14:31:36,015: DEBUG/main] Retrieved datatype module galaxy.datatypes.binary:Binary from the datatype registry for extension cxb. +[2024-02-23 14:31:36,015: DEBUG/main] Retrieved datatype module galaxy.datatypes.interval:ChromatinInteractions from the datatype registry for extension chrint. +[2024-02-23 14:31:36,015: DEBUG/main] Retrieved datatype module galaxy.datatypes.tabular:CSV from the datatype registry for extension csv. +[2024-02-23 14:31:36,015: DEBUG/main] Retrieved datatype module galaxy.datatypes.tabular:TSV from the datatype registry for extension tsv. +[2024-02-23 14:31:36,015: DEBUG/main] Retrieved datatype module galaxy.datatypes.tabular:TSV from the datatype registry for extension intermine_tabular. +[2024-02-23 14:31:36,015: DEBUG/main] Retrieved datatype module galaxy.datatypes.interval:CustomTrack from the datatype registry for extension customtrack. +[2024-02-23 14:31:36,016: DEBUG/main] Retrieved datatype module galaxy.datatypes.ngsindex:BowtieColorIndex from the datatype registry for extension bowtie_color_index. +[2024-02-23 14:31:36,016: DEBUG/main] Retrieved datatype module galaxy.datatypes.ngsindex:BowtieBaseIndex from the datatype registry for extension bowtie_base_index. +[2024-02-23 14:31:36,016: DEBUG/main] Retrieved datatype module galaxy.datatypes.sequence:csFasta from the datatype registry for extension csfasta. +[2024-02-23 14:31:36,016: DEBUG/main] Retrieved datatype module galaxy.datatypes.data:Data from the datatype registry for extension data. +[2024-02-23 14:31:36,016: DEBUG/main] Retrieved datatype module galaxy.datatypes.binary:Binary from the datatype registry for extension gz. +[2024-02-23 14:31:36,016: DEBUG/main] Retrieved datatype module galaxy.datatypes.binary:Binary from the datatype registry for extension binary. +[2024-02-23 14:31:36,016: DEBUG/main] Retrieved datatype module galaxy.datatypes.text:Json from the datatype registry for extension d3_hierarchy. +[2024-02-23 14:31:36,016: DEBUG/main] Retrieved datatype module galaxy.datatypes.text:ImgtJson from the datatype registry for extension imgt.json. +[2024-02-23 14:31:36,016: DEBUG/main] Retrieved datatype module galaxy.datatypes.text:GeoJson from the datatype registry for extension geojson. +[2024-02-23 14:31:36,016: DEBUG/main] Retrieved datatype module galaxy.datatypes.text:Json from the datatype registry for extension data_manager_json. +[2024-02-23 14:31:36,016: DEBUG/main] Retrieved datatype module galaxy.datatypes.sequence:DotBracket from the datatype registry for extension dbn. +[2024-02-23 14:31:36,017: DEBUG/main] Retrieved datatype module galaxy.datatypes.tabular:Tabular from the datatype registry for extension fai. +[2024-02-23 14:31:36,017: DEBUG/main] Retrieved datatype module galaxy.datatypes.sequence:Fasta from the datatype registry for extension fasta. +[2024-02-23 14:31:36,017: DEBUG/main] Retrieved datatype module galaxy.datatypes.sequence:Fastg from the datatype registry for extension fastg. +[2024-02-23 14:31:36,017: DEBUG/main] Retrieved datatype module galaxy.datatypes.sequence:Fastq from the datatype registry for extension fastq. +[2024-02-23 14:31:36,017: DEBUG/main] Retrieved datatype module galaxy.datatypes.sequence:FastqSanger from the datatype registry for extension fastqsanger. +[2024-02-23 14:31:36,017: DEBUG/main] Retrieved datatype module galaxy.datatypes.sequence:FastqSolexa from the datatype registry for extension fastqsolexa. +[2024-02-23 14:31:36,018: DEBUG/main] Retrieved datatype module galaxy.datatypes.sequence:FastqCSSanger from the datatype registry for extension fastqcssanger. +[2024-02-23 14:31:36,018: DEBUG/main] Retrieved datatype module galaxy.datatypes.sequence:FastqIllumina from the datatype registry for extension fastqillumina. +[2024-02-23 14:31:36,018: DEBUG/main] Retrieved datatype module galaxy.datatypes.sequence:SequenceSplitLocations from the datatype registry for extension fqtoc. +[2024-02-23 14:31:36,018: DEBUG/main] Retrieved datatype module galaxy.datatypes.tabular:Eland from the datatype registry for extension eland. +[2024-02-23 14:31:36,018: DEBUG/main] Retrieved datatype module galaxy.datatypes.tabular:ElandMulti from the datatype registry for extension elandmulti. +[2024-02-23 14:31:36,018: DEBUG/main] Retrieved datatype module galaxy.datatypes.tracks:GeneTrack from the datatype registry for extension genetrack. +[2024-02-23 14:31:36,019: DEBUG/main] Retrieved datatype module galaxy.datatypes.interval:Gff from the datatype registry for extension gff. +[2024-02-23 14:31:36,019: DEBUG/main] Retrieved datatype module galaxy.datatypes.interval:Gff3 from the datatype registry for extension gff3. +[2024-02-23 14:31:36,019: DEBUG/main] Retrieved datatype module galaxy.datatypes.images:Gif from the datatype registry for extension gif. +[2024-02-23 14:31:36,019: DEBUG/main] Retrieved datatype module galaxy.datatypes.images:Gmaj from the datatype registry for extension gmaj.zip. +[2024-02-23 14:31:36,019: DEBUG/main] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension graph_dot. +[2024-02-23 14:31:36,019: DEBUG/main] Retrieved datatype module galaxy.datatypes.interval:Gtf from the datatype registry for extension gtf. +[2024-02-23 14:31:36,019: DEBUG/main] Retrieved datatype module galaxy.datatypes.binary:Binary from the datatype registry for extension toolshed.gz. +[2024-02-23 14:31:36,019: DEBUG/main] Retrieved datatype module galaxy.datatypes.binary:Binary from the datatype registry for extension hdf4. +[2024-02-23 14:31:36,020: DEBUG/main] Retrieved datatype module galaxy.datatypes.binary:H5 from the datatype registry for extension h5. +[2024-02-23 14:31:36,020: DEBUG/main] Retrieved datatype module galaxy.datatypes.binary:H5 from the datatype registry for extension scool. +[2024-02-23 14:31:36,020: DEBUG/main] Retrieved datatype module galaxy.datatypes.binary:Grib from the datatype registry for extension grib. +[2024-02-23 14:31:36,020: DEBUG/main] Retrieved datatype module galaxy.datatypes.binary:Loom from the datatype registry for extension loom. +[2024-02-23 14:31:36,020: DEBUG/main] Retrieved datatype module galaxy.datatypes.binary:Anndata from the datatype registry for extension h5ad. +[2024-02-23 14:31:36,020: DEBUG/main] Retrieved datatype module galaxy.datatypes.binary:Visium from the datatype registry for extension visium.tar.gz. +[2024-02-23 14:31:36,020: DEBUG/main] Retrieved datatype module galaxy.datatypes.binary:H5 from the datatype registry for extension mz5. +[2024-02-23 14:31:36,020: DEBUG/main] Retrieved datatype module galaxy.datatypes.text:Json from the datatype registry for extension hyphy_results.json. +[2024-02-23 14:31:36,020: DEBUG/main] Retrieved datatype module galaxy.datatypes.text:Json from the datatype registry for extension hivtrace. +[2024-02-23 14:31:36,020: DEBUG/main] Retrieved datatype module galaxy.datatypes.binary:Cool from the datatype registry for extension cool. +[2024-02-23 14:31:36,020: DEBUG/main] Retrieved datatype module galaxy.datatypes.binary:MCool from the datatype registry for extension mcool. +[2024-02-23 14:31:36,021: DEBUG/main] Retrieved datatype module galaxy.datatypes.binary:H5MLM from the datatype registry for extension h5mlm. +[2024-02-23 14:31:36,021: DEBUG/main] Retrieved datatype module galaxy.datatypes.binary:LudwigModel from the datatype registry for extension ludwig_model. +[2024-02-23 14:31:36,021: DEBUG/main] Retrieved datatype module galaxy.datatypes.text:Html from the datatype registry for extension html. +[2024-02-23 14:31:36,021: DEBUG/main] Retrieved datatype module galaxy.datatypes.text:Html from the datatype registry for extension ludwig_report.html. +[2024-02-23 14:31:36,021: DEBUG/main] Retrieved datatype module galaxy.datatypes.interval:Interval from the datatype registry for extension interval. +[2024-02-23 14:31:36,021: DEBUG/main] Retrieved datatype module galaxy.datatypes.binary:Binary from the datatype registry for extension jellyfish. +[2024-02-23 14:31:36,021: DEBUG/main] Retrieved datatype module galaxy.datatypes.binary:Binary from the datatype registry for extension ktab. +[2024-02-23 14:31:36,021: DEBUG/main] Retrieved datatype module galaxy.datatypes.binary:Binary from the datatype registry for extension hist. +[2024-02-23 14:31:36,021: DEBUG/main] Retrieved datatype module galaxy.datatypes.binary:Binary from the datatype registry for extension prof. +[2024-02-23 14:31:36,104: DEBUG/main] Retrieved datatype module galaxy.datatypes.isa:IsaTab from the datatype registry for extension isa-tab. +[2024-02-23 14:31:36,105: DEBUG/main] Retrieved datatype module galaxy.datatypes.isa:IsaJson from the datatype registry for extension isa-json. +[2024-02-23 14:31:36,105: DEBUG/main] Retrieved datatype module galaxy.datatypes.tabular:Tabular from the datatype registry for extension picard_interval_list. +[2024-02-23 14:31:36,105: DEBUG/main] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension gatk_interval. +[2024-02-23 14:31:36,105: DEBUG/main] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension gatk_report. +[2024-02-23 14:31:36,105: DEBUG/main] Retrieved datatype module galaxy.datatypes.tabular:Tabular from the datatype registry for extension gatk_dbsnp. +[2024-02-23 14:31:36,106: DEBUG/main] Retrieved datatype module galaxy.datatypes.tabular:Tabular from the datatype registry for extension gatk_tranche. +[2024-02-23 14:31:36,106: DEBUG/main] Retrieved datatype module galaxy.datatypes.tabular:Tabular from the datatype registry for extension gatk_recal. +[2024-02-23 14:31:36,106: DEBUG/main] Retrieved datatype module galaxy.datatypes.tabular:Tabular from the datatype registry for extension cnn. +[2024-02-23 14:31:36,106: DEBUG/main] Retrieved datatype module galaxy.datatypes.tabular:Tabular from the datatype registry for extension cns. +[2024-02-23 14:31:36,106: DEBUG/main] Retrieved datatype module galaxy.datatypes.tabular:Tabular from the datatype registry for extension cnr. +[2024-02-23 14:31:36,106: DEBUG/main] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension hhr. +[2024-02-23 14:31:36,106: DEBUG/main] Retrieved datatype module galaxy.datatypes.images:Jpg from the datatype registry for extension jpg. +[2024-02-23 14:31:36,106: DEBUG/main] Retrieved datatype module galaxy.datatypes.images:Tiff from the datatype registry for extension tiff. +[2024-02-23 14:31:36,106: DEBUG/main] Retrieved datatype module galaxy.datatypes.images:Tiff from the datatype registry for extension tf2. +[2024-02-23 14:31:36,107: DEBUG/main] Retrieved datatype module galaxy.datatypes.images:Tiff from the datatype registry for extension tf8. +[2024-02-23 14:31:36,107: DEBUG/main] Retrieved datatype module galaxy.datatypes.images:Tiff from the datatype registry for extension btf. +[2024-02-23 14:31:36,107: DEBUG/main] Retrieved datatype module galaxy.datatypes.images:Tiff from the datatype registry for extension tif. +[2024-02-23 14:31:36,107: DEBUG/main] Retrieved datatype module galaxy.datatypes.images:Tiff from the datatype registry for extension svs. +[2024-02-23 14:31:36,107: DEBUG/main] Retrieved datatype module galaxy.datatypes.images:Tiff from the datatype registry for extension scn. +[2024-02-23 14:31:36,107: DEBUG/main] Retrieved datatype module galaxy.datatypes.images:Tiff from the datatype registry for extension bif. +[2024-02-23 14:31:36,107: DEBUG/main] Retrieved datatype module galaxy.datatypes.images:OMETiff from the datatype registry for extension ome.tiff. +[2024-02-23 14:31:36,107: DEBUG/main] Retrieved datatype module galaxy.datatypes.images:Hamamatsu from the datatype registry for extension vms. +[2024-02-23 14:31:36,107: DEBUG/main] Retrieved datatype module galaxy.datatypes.images:Hamamatsu from the datatype registry for extension vmu. +[2024-02-23 14:31:36,107: DEBUG/main] Retrieved datatype module galaxy.datatypes.images:Hamamatsu from the datatype registry for extension ndpi. +[2024-02-23 14:31:36,107: DEBUG/main] Retrieved datatype module galaxy.datatypes.images:Mirax from the datatype registry for extension mrxs. +[2024-02-23 14:31:36,108: DEBUG/main] Retrieved datatype module galaxy.datatypes.images:Sakura from the datatype registry for extension svslide. +[2024-02-23 14:31:36,108: DEBUG/main] Retrieved datatype module galaxy.datatypes.images:Bmp from the datatype registry for extension bmp. +[2024-02-23 14:31:36,108: DEBUG/main] Retrieved datatype module galaxy.datatypes.images:Im from the datatype registry for extension im. +[2024-02-23 14:31:36,108: DEBUG/main] Retrieved datatype module galaxy.datatypes.images:Pcd from the datatype registry for extension pcd. +[2024-02-23 14:31:36,108: DEBUG/main] Retrieved datatype module galaxy.datatypes.images:Pcx from the datatype registry for extension pcx. +[2024-02-23 14:31:36,108: DEBUG/main] Retrieved datatype module galaxy.datatypes.images:Ppm from the datatype registry for extension ppm. +[2024-02-23 14:31:36,108: DEBUG/main] Retrieved datatype module galaxy.datatypes.images:Psd from the datatype registry for extension psd. +[2024-02-23 14:31:36,108: DEBUG/main] Retrieved datatype module galaxy.datatypes.images:Xbm from the datatype registry for extension xbm. +[2024-02-23 14:31:36,108: DEBUG/main] Retrieved datatype module galaxy.datatypes.images:Xpm from the datatype registry for extension xpm. +[2024-02-23 14:31:36,108: DEBUG/main] Retrieved datatype module galaxy.datatypes.images:Rgb from the datatype registry for extension rgb. +[2024-02-23 14:31:36,108: DEBUG/main] Retrieved datatype module galaxy.datatypes.images:Pbm from the datatype registry for extension pbm. +[2024-02-23 14:31:36,108: DEBUG/main] Retrieved datatype module galaxy.datatypes.images:Pgm from the datatype registry for extension pgm. +[2024-02-23 14:31:36,108: DEBUG/main] Retrieved datatype module galaxy.datatypes.images:Nrrd from the datatype registry for extension nrrd. +[2024-02-23 14:31:36,108: DEBUG/main] Retrieved datatype module galaxy.datatypes.images:Nrrd from the datatype registry for extension nhdr. +[2024-02-23 14:31:36,109: DEBUG/main] Retrieved datatype module galaxy.datatypes.sequence:RNADotPlotMatrix from the datatype registry for extension rna_eps. +[2024-02-23 14:31:36,110: DEBUG/main] Retrieved datatype module galaxy.datatypes.qiime2:QIIME2Artifact from the datatype registry for extension qza. +[2024-02-23 14:31:36,110: DEBUG/main] Retrieved datatype module galaxy.datatypes.qiime2:QIIME2Visualization from the datatype registry for extension qzv. +[2024-02-23 14:31:36,110: DEBUG/main] Retrieved datatype module galaxy.datatypes.qiime2:QIIME2Metadata from the datatype registry for extension qiime2.tabular. +[2024-02-23 14:31:36,110: DEBUG/main] Retrieved datatype module galaxy.datatypes.binary:CompressedZipArchive from the datatype registry for extension zip. +[2024-02-23 14:31:36,110: DEBUG/main] Retrieved datatype module galaxy.datatypes.binary:CompressedZipArchive from the datatype registry for extension ncbi_genome_dataset.zip. +[2024-02-23 14:31:36,110: DEBUG/main] Retrieved datatype module galaxy.datatypes.binary:CompressedArchive from the datatype registry for extension tar. +[2024-02-23 14:31:36,110: DEBUG/main] Retrieved datatype module galaxy.datatypes.data:Directory from the datatype registry for extension directory. +[2024-02-23 14:31:36,110: DEBUG/main] Retrieved datatype module galaxy.datatypes.text:Yaml from the datatype registry for extension yaml. +[2024-02-23 14:31:36,110: DEBUG/main] Retrieved datatype module galaxy.datatypes.tabular:Tabular from the datatype registry for extension mrm. +[2024-02-23 14:31:36,113: DEBUG/main] Retrieved datatype module galaxy.datatypes.proteomics:Dta from the datatype registry for extension dta. +[2024-02-23 14:31:36,113: DEBUG/main] Retrieved datatype module galaxy.datatypes.proteomics:Dta2d from the datatype registry for extension dta2d. +[2024-02-23 14:31:36,113: DEBUG/main] Retrieved datatype module galaxy.datatypes.proteomics:Edta from the datatype registry for extension edta. +[2024-02-23 14:31:36,113: DEBUG/main] Retrieved datatype module galaxy.datatypes.proteomics:PepXml from the datatype registry for extension pepxml. +[2024-02-23 14:31:36,113: DEBUG/main] Retrieved datatype module galaxy.datatypes.proteomics:PepXml from the datatype registry for extension raw_pepxml. +[2024-02-23 14:31:36,113: DEBUG/main] Retrieved datatype module galaxy.datatypes.proteomics:PepXml from the datatype registry for extension peptideprophet_pepxml. +[2024-02-23 14:31:36,113: DEBUG/main] Retrieved datatype module galaxy.datatypes.proteomics:PepXml from the datatype registry for extension interprophet_pepxml. +[2024-02-23 14:31:36,113: DEBUG/main] Retrieved datatype module galaxy.datatypes.proteomics:ProtXML from the datatype registry for extension protxml. +[2024-02-23 14:31:36,113: DEBUG/main] Retrieved datatype module galaxy.datatypes.proteomics:ParamXml from the datatype registry for extension paramxml. +[2024-02-23 14:31:36,114: DEBUG/main] Retrieved datatype module galaxy.datatypes.proteomics:Kroenik from the datatype registry for extension kroenik. +[2024-02-23 14:31:36,114: DEBUG/main] Retrieved datatype module galaxy.datatypes.proteomics:PepList from the datatype registry for extension peplist. +[2024-02-23 14:31:36,114: DEBUG/main] Retrieved datatype module galaxy.datatypes.proteomics:PSMS from the datatype registry for extension psms. +[2024-02-23 14:31:36,114: DEBUG/main] Retrieved datatype module galaxy.datatypes.proteomics:PepXmlReport from the datatype registry for extension pepxml.tsv. +[2024-02-23 14:31:36,114: DEBUG/main] Retrieved datatype module galaxy.datatypes.proteomics:ProtXmlReport from the datatype registry for extension protxml.tsv. +[2024-02-23 14:31:36,114: DEBUG/main] Retrieved datatype module galaxy.datatypes.proteomics:MascotDat from the datatype registry for extension mascotdat. +[2024-02-23 14:31:36,114: DEBUG/main] Retrieved datatype module galaxy.datatypes.proteomics:MzIdentML from the datatype registry for extension mzid. +[2024-02-23 14:31:36,114: DEBUG/main] Retrieved datatype module galaxy.datatypes.proteomics:IdXML from the datatype registry for extension idxml. +[2024-02-23 14:31:36,114: DEBUG/main] Retrieved datatype module galaxy.datatypes.proteomics:TandemXML from the datatype registry for extension tandem. +[2024-02-23 14:31:36,114: DEBUG/main] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension sirius.ms. +[2024-02-23 14:31:36,114: DEBUG/main] Retrieved datatype module galaxy.datatypes.proteomics:ThermoRAW from the datatype registry for extension thermo.raw. +[2024-02-23 14:31:36,114: DEBUG/main] Retrieved datatype module galaxy.datatypes.binary:BafTar from the datatype registry for extension brukerbaf.d.tar. +[2024-02-23 14:31:36,114: DEBUG/main] Retrieved datatype module galaxy.datatypes.binary:YepTar from the datatype registry for extension agilentbrukeryep.d.tar. +[2024-02-23 14:31:36,115: DEBUG/main] Retrieved datatype module galaxy.datatypes.binary:TdfTar from the datatype registry for extension brukertdf.d.tar. +[2024-02-23 14:31:36,115: DEBUG/main] Retrieved datatype module galaxy.datatypes.binary:MassHunterTar from the datatype registry for extension agilentmasshunter.d.tar. +[2024-02-23 14:31:36,115: DEBUG/main] Retrieved datatype module galaxy.datatypes.binary:MassLynxTar from the datatype registry for extension watersmasslynx.raw.tar. +[2024-02-23 14:31:36,115: DEBUG/main] Retrieved datatype module galaxy.datatypes.binary:WiffTar from the datatype registry for extension wiff.tar. +[2024-02-23 14:31:36,115: DEBUG/main] Retrieved datatype module galaxy.datatypes.binary:Wiff2Tar from the datatype registry for extension wiff2.tar. +[2024-02-23 14:31:36,115: DEBUG/main] Retrieved datatype module galaxy.datatypes.proteomics:MascotXML from the datatype registry for extension mascotxml. +[2024-02-23 14:31:36,115: DEBUG/main] Retrieved datatype module galaxy.datatypes.proteomics:MzTab from the datatype registry for extension mztab. +[2024-02-23 14:31:36,115: DEBUG/main] Retrieved datatype module galaxy.datatypes.proteomics:MzTab2 from the datatype registry for extension mztab2. +[2024-02-23 14:31:36,115: DEBUG/main] Retrieved datatype module galaxy.datatypes.proteomics:MzML from the datatype registry for extension mzml. +[2024-02-23 14:31:36,115: DEBUG/main] Retrieved datatype module galaxy.datatypes.proteomics:NmrML from the datatype registry for extension nmrml. +[2024-02-23 14:31:36,115: DEBUG/main] Retrieved datatype module galaxy.datatypes.binary:Meryldb from the datatype registry for extension meryldb. +[2024-02-23 14:31:36,116: DEBUG/main] Retrieved datatype module galaxy.datatypes.binary:Bref3 from the datatype registry for extension bref3. +[2024-02-23 14:31:36,116: DEBUG/main] Retrieved datatype module galaxy.datatypes.proteomics:Mgf from the datatype registry for extension mgf. +[2024-02-23 14:31:36,116: DEBUG/main] Retrieved datatype module galaxy.datatypes.proteomics:Wiff from the datatype registry for extension wiff. +[2024-02-23 14:31:36,116: DEBUG/main] Retrieved datatype module galaxy.datatypes.proteomics:Wiff2 from the datatype registry for extension wiff2. +[2024-02-23 14:31:36,116: DEBUG/main] Retrieved datatype module galaxy.datatypes.proteomics:MzXML from the datatype registry for extension mzxml. +[2024-02-23 14:31:36,116: DEBUG/main] Retrieved datatype module galaxy.datatypes.proteomics:MzData from the datatype registry for extension mzdata. +[2024-02-23 14:31:36,116: DEBUG/main] Retrieved datatype module galaxy.datatypes.proteomics:Ms2 from the datatype registry for extension ms2. +[2024-02-23 14:31:36,116: DEBUG/main] Retrieved datatype module galaxy.datatypes.proteomics:MzQuantML from the datatype registry for extension mzq. +[2024-02-23 14:31:36,116: DEBUG/main] Retrieved datatype module galaxy.datatypes.binary:SQlite from the datatype registry for extension sqlite. +[2024-02-23 14:31:36,116: DEBUG/main] Retrieved datatype module galaxy.datatypes.binary:MzSQlite from the datatype registry for extension mz.sqlite. +[2024-02-23 14:31:36,116: DEBUG/main] Retrieved datatype module galaxy.datatypes.binary:OSW from the datatype registry for extension osw. +[2024-02-23 14:31:36,116: DEBUG/main] Retrieved datatype module galaxy.datatypes.binary:PQP from the datatype registry for extension pqp. +[2024-02-23 14:31:36,116: DEBUG/main] Retrieved datatype module galaxy.datatypes.proteomics:TraML from the datatype registry for extension traml. +[2024-02-23 14:31:36,117: DEBUG/main] Retrieved datatype module galaxy.datatypes.proteomics:TrafoXML from the datatype registry for extension trafoxml. +[2024-02-23 14:31:36,117: DEBUG/main] Retrieved datatype module galaxy.datatypes.proteomics:FeatureXML from the datatype registry for extension featurexml. +[2024-02-23 14:31:36,117: DEBUG/main] Retrieved datatype module galaxy.datatypes.proteomics:ConsensusXML from the datatype registry for extension consensusxml. +[2024-02-23 14:31:36,117: DEBUG/main] Retrieved datatype module galaxy.datatypes.proteomics:UniProtXML from the datatype registry for extension uniprotxml. +[2024-02-23 14:31:36,117: DEBUG/main] Retrieved datatype module galaxy.datatypes.proteomics:XquestXML from the datatype registry for extension xquest.xml. +[2024-02-23 14:31:36,117: DEBUG/main] Retrieved datatype module galaxy.datatypes.proteomics:XquestSpecXML from the datatype registry for extension spec.xml. +[2024-02-23 14:31:36,117: DEBUG/main] Retrieved datatype module galaxy.datatypes.proteomics:QCML from the datatype registry for extension qcml. +[2024-02-23 14:31:36,117: DEBUG/main] Retrieved datatype module galaxy.datatypes.text:Json from the datatype registry for extension mzqc. +[2024-02-23 14:31:36,117: DEBUG/main] Retrieved datatype module galaxy.datatypes.proteomics:Msp from the datatype registry for extension msp. +[2024-02-23 14:31:36,117: DEBUG/main] Retrieved datatype module galaxy.datatypes.proteomics:SPLibNoIndex from the datatype registry for extension splib_noindex. +[2024-02-23 14:31:36,117: DEBUG/main] Retrieved datatype module galaxy.datatypes.proteomics:SPLib from the datatype registry for extension splib. +[2024-02-23 14:31:36,117: DEBUG/main] Retrieved datatype module galaxy.datatypes.binary:BlibSQlite from the datatype registry for extension blib. +[2024-02-23 14:31:36,117: DEBUG/main] Retrieved datatype module galaxy.datatypes.binary:DlibSQlite from the datatype registry for extension dlib. +[2024-02-23 14:31:36,118: DEBUG/main] Retrieved datatype module galaxy.datatypes.binary:ElibSQlite from the datatype registry for extension elib. +[2024-02-23 14:31:36,118: DEBUG/main] Retrieved datatype module galaxy.datatypes.proteomics:XHunterAslFormat from the datatype registry for extension hlf. +[2024-02-23 14:31:36,118: DEBUG/main] Retrieved datatype module galaxy.datatypes.binary:IdpDB from the datatype registry for extension idpdb. +[2024-02-23 14:31:36,118: DEBUG/main] Retrieved datatype module galaxy.datatypes.proteomics:Sf3 from the datatype registry for extension sf3. +[2024-02-23 14:31:36,118: DEBUG/main] Retrieved datatype module galaxy.datatypes.binary:Binary from the datatype registry for extension cps. +[2024-02-23 14:31:36,118: DEBUG/main] Retrieved datatype module galaxy.datatypes.tabular:ConnectivityTable from the datatype registry for extension ct. +[2024-02-23 14:31:36,118: DEBUG/main] Retrieved datatype module galaxy.datatypes.binary:PostgresqlArchive from the datatype registry for extension postgresql. +[2024-02-23 14:31:36,118: DEBUG/main] Retrieved datatype module galaxy.datatypes.binary:MongoDBArchive from the datatype registry for extension mongodb. +[2024-02-23 14:31:36,118: DEBUG/main] Retrieved datatype module galaxy.datatypes.binary:GeneNoteBook from the datatype registry for extension genenotebook. +[2024-02-23 14:31:36,118: DEBUG/main] Retrieved datatype module galaxy.datatypes.binary:SearchGuiArchive from the datatype registry for extension searchgui_archive. +[2024-02-23 14:31:36,118: DEBUG/main] Retrieved datatype module galaxy.datatypes.binary:Fast5Archive from the datatype registry for extension fast5.tar. +[2024-02-23 14:31:36,118: DEBUG/main] Retrieved datatype module galaxy.datatypes.binary:Fast5ArchiveGz from the datatype registry for extension fast5.tar.gz. +[2024-02-23 14:31:36,118: DEBUG/main] Retrieved datatype module galaxy.datatypes.binary:Fast5ArchiveBz2 from the datatype registry for extension fast5.tar.bz2. +[2024-02-23 14:31:36,119: DEBUG/main] Retrieved datatype module galaxy.datatypes.binary:CompressedArchive from the datatype registry for extension peptideshaker_archive. +[2024-02-23 14:31:36,119: DEBUG/main] Retrieved datatype module galaxy.datatypes.tabular:Tabular from the datatype registry for extension percin. +[2024-02-23 14:31:36,119: DEBUG/main] Retrieved datatype module galaxy.datatypes.xml:GenericXml from the datatype registry for extension percout. +[2024-02-23 14:31:36,119: DEBUG/main] Retrieved datatype module galaxy.datatypes.tabular:Tabular from the datatype registry for extension hardklor. +[2024-02-23 14:31:36,119: DEBUG/main] Retrieved datatype module galaxy.datatypes.tabular:Tabular from the datatype registry for extension kronik. +[2024-02-23 14:31:36,119: DEBUG/main] Retrieved datatype module galaxy.datatypes.proteomics:ImzML from the datatype registry for extension imzml. +[2024-02-23 14:31:36,119: DEBUG/main] Retrieved datatype module galaxy.datatypes.images:Analyze75 from the datatype registry for extension analyze75. +[2024-02-23 14:31:36,119: DEBUG/main] Retrieved datatype module galaxy.datatypes.images:Nifti1 from the datatype registry for extension nii1. +[2024-02-23 14:31:36,120: DEBUG/main] Retrieved datatype module galaxy.datatypes.images:Nifti2 from the datatype registry for extension nii2. +[2024-02-23 14:31:36,120: DEBUG/main] Retrieved datatype module galaxy.datatypes.images:Gifti from the datatype registry for extension gii. +[2024-02-23 14:31:36,120: DEBUG/main] Retrieved datatype module galaxy.datatypes.images:Tck from the datatype registry for extension tck. +[2024-02-23 14:31:36,120: DEBUG/main] Retrieved datatype module galaxy.datatypes.images:Trk from the datatype registry for extension trk. +[2024-02-23 14:31:36,120: DEBUG/main] Retrieved datatype module galaxy.datatypes.images:Mrc2014 from the datatype registry for extension mrc. +[2024-02-23 14:31:36,120: DEBUG/main] Retrieved datatype module galaxy.datatypes.images:Star from the datatype registry for extension star. +[2024-02-23 14:31:36,120: DEBUG/main] Retrieved datatype module galaxy.datatypes.proteomics:PEFF from the datatype registry for extension peff. +[2024-02-23 14:31:36,120: DEBUG/main] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension toml. +[2024-02-23 14:31:36,121: DEBUG/main] Retrieved datatype module galaxy.datatypes.flow:FCS from the datatype registry for extension fcs. +[2024-02-23 14:31:36,121: DEBUG/main] Retrieved datatype module galaxy.datatypes.tabular:Tabular from the datatype registry for extension flowtext. +[2024-02-23 14:31:36,121: DEBUG/main] Retrieved datatype module galaxy.datatypes.tabular:Tabular from the datatype registry for extension flowclr. +[2024-02-23 14:31:36,122: DEBUG/main] Retrieved datatype module galaxy.datatypes.tabular:Tabular from the datatype registry for extension flowmfi. +[2024-02-23 14:31:36,122: DEBUG/main] Retrieved datatype module galaxy.datatypes.tabular:Tabular from the datatype registry for extension flowstat1. +[2024-02-23 14:31:36,122: DEBUG/main] Retrieved datatype module galaxy.datatypes.tabular:Tabular from the datatype registry for extension flowstat2. +[2024-02-23 14:31:36,123: DEBUG/main] Retrieved datatype module galaxy.datatypes.tabular:Tabular from the datatype registry for extension flowstat3. +[2024-02-23 14:31:36,123: DEBUG/main] Retrieved datatype module galaxy.datatypes.tabular:Tabular from the datatype registry for extension flowscore. +[2024-02-23 14:31:36,123: DEBUG/main] Retrieved datatype module galaxy.datatypes.binary:RData from the datatype registry for extension flowframe. +[2024-02-23 14:31:36,123: DEBUG/main] Retrieved datatype module galaxy.datatypes.binary:RData from the datatype registry for extension fsom. +[2024-02-23 14:31:36,123: DEBUG/main] Retrieved datatype module galaxy.datatypes.binary:RData from the datatype registry for extension flowset. +[2024-02-23 14:31:36,123: DEBUG/main] Retrieved datatype module galaxy.datatypes.tabular:Tabular from the datatype registry for extension metacyto_clr.txt. +[2024-02-23 14:31:36,124: DEBUG/main] Retrieved datatype module galaxy.datatypes.metacyto:mSummary from the datatype registry for extension metacyto_summary.txt. +[2024-02-23 14:31:36,124: DEBUG/main] Retrieved datatype module galaxy.datatypes.metacyto:mStats from the datatype registry for extension metacyto_stats.txt. +[2024-02-23 14:31:36,124: DEBUG/main] Retrieved datatype module galaxy.datatypes.binary:CompressedArchive from the datatype registry for extension deeptools_compute_matrix_archive. +[2024-02-23 14:31:36,124: DEBUG/main] Retrieved datatype module galaxy.datatypes.binary:CompressedArchive from the datatype registry for extension deeptools_coverage_matrix. +[2024-02-23 14:31:36,124: DEBUG/main] Retrieved datatype module galaxy.datatypes.binary:NetCDF from the datatype registry for extension netcdf. +[2024-02-23 14:31:36,124: DEBUG/main] Retrieved datatype module galaxy.datatypes.images:Eps from the datatype registry for extension eps. +[2024-02-23 14:31:36,124: DEBUG/main] Retrieved datatype module galaxy.datatypes.images:Rast from the datatype registry for extension rast. +[2024-02-23 14:31:36,124: DEBUG/main] Retrieved datatype module galaxy.datatypes.images:Laj from the datatype registry for extension laj. +[2024-02-23 14:31:36,124: DEBUG/main] Retrieved datatype module galaxy.datatypes.sequence:Lav from the datatype registry for extension lav. +[2024-02-23 14:31:36,124: DEBUG/main] Retrieved datatype module galaxy.datatypes.sequence:Maf from the datatype registry for extension maf. +[2024-02-23 14:31:36,125: DEBUG/main] Retrieved datatype module galaxy.datatypes.sequence:MafCustomTrack from the datatype registry for extension mafcustomtrack. +[2024-02-23 14:31:36,125: DEBUG/main] Retrieved datatype module galaxy.datatypes.tabular:MatrixMarket from the datatype registry for extension mtx. +[2024-02-23 14:31:36,125: DEBUG/main] Retrieved datatype module galaxy.datatypes.tabular:CMAP from the datatype registry for extension cmap. +[2024-02-23 14:31:36,125: DEBUG/main] Retrieved datatype module galaxy.datatypes.interval:ENCODEPeak from the datatype registry for extension encodepeak. +[2024-02-23 14:31:36,125: DEBUG/main] Retrieved datatype module galaxy.datatypes.images:Pdf from the datatype registry for extension pdf. +[2024-02-23 14:31:36,125: DEBUG/main] Retrieved datatype module galaxy.datatypes.tabular:Pileup from the datatype registry for extension pileup. +[2024-02-23 14:31:36,125: DEBUG/main] Retrieved datatype module galaxy.datatypes.tabular:Psl from the datatype registry for extension psl. +[2024-02-23 14:31:36,125: DEBUG/main] Retrieved datatype module galaxy.datatypes.text:Obo from the datatype registry for extension obo. +[2024-02-23 14:31:36,125: DEBUG/main] Retrieved datatype module galaxy.datatypes.xml:Owl from the datatype registry for extension owl. +[2024-02-23 14:31:36,125: DEBUG/main] Retrieved datatype module galaxy.datatypes.images:Png from the datatype registry for extension png. +[2024-02-23 14:31:36,125: DEBUG/main] Retrieved datatype module galaxy.datatypes.qualityscore:QualityScore from the datatype registry for extension qual. +[2024-02-23 14:31:36,125: DEBUG/main] Retrieved datatype module galaxy.datatypes.qualityscore:QualityScoreSolexa from the datatype registry for extension qualsolexa. +[2024-02-23 14:31:36,126: DEBUG/main] Retrieved datatype module galaxy.datatypes.qualityscore:QualityScoreIllumina from the datatype registry for extension qualillumina. +[2024-02-23 14:31:36,126: DEBUG/main] Retrieved datatype module galaxy.datatypes.qualityscore:QualityScoreSOLiD from the datatype registry for extension qualsolid. +[2024-02-23 14:31:36,126: DEBUG/main] Retrieved datatype module galaxy.datatypes.qualityscore:QualityScore454 from the datatype registry for extension qual454. +[2024-02-23 14:31:36,126: DEBUG/main] Retrieved datatype module galaxy.datatypes.assembly:Roadmaps from the datatype registry for extension roadmaps. +[2024-02-23 14:31:36,126: DEBUG/main] Retrieved datatype module galaxy.datatypes.tabular:Sam from the datatype registry for extension sam. +[2024-02-23 14:31:36,126: DEBUG/main] Retrieved datatype module galaxy.datatypes.binary:Scf from the datatype registry for extension scf. +[2024-02-23 14:31:36,126: DEBUG/main] Retrieved datatype module galaxy.datatypes.assembly:Sequences from the datatype registry for extension sequences. +[2024-02-23 14:31:36,126: DEBUG/main] Retrieved datatype module galaxy.datatypes.text:SnpEffDb from the datatype registry for extension snpeffdb. +[2024-02-23 14:31:36,126: DEBUG/main] Retrieved datatype module galaxy.datatypes.text:SnpSiftDbNSFP from the datatype registry for extension snpsiftdbnsfp. +[2024-02-23 14:31:36,126: DEBUG/main] Retrieved datatype module galaxy.datatypes.tabular:Tabular from the datatype registry for extension dbnsfp.tabular. +[2024-02-23 14:31:36,126: DEBUG/main] Retrieved datatype module galaxy.datatypes.binary:Sff from the datatype registry for extension sff. +[2024-02-23 14:31:36,127: DEBUG/main] Retrieved datatype module galaxy.datatypes.binary:Sra from the datatype registry for extension sra. +[2024-02-23 14:31:36,127: DEBUG/main] Retrieved datatype module galaxy.datatypes.tabular:SraManifest from the datatype registry for extension sra_manifest.tabular. +[2024-02-23 14:31:36,127: DEBUG/main] Retrieved datatype module galaxy.datatypes.xml:GenericXml from the datatype registry for extension svg. +[2024-02-23 14:31:36,127: DEBUG/main] Retrieved datatype module galaxy.datatypes.tabular:Taxonomy from the datatype registry for extension taxonomy. +[2024-02-23 14:31:36,127: DEBUG/main] Retrieved datatype module galaxy.datatypes.tabular:Tabular from the datatype registry for extension tabular. +[2024-02-23 14:31:36,127: DEBUG/main] Retrieved datatype module galaxy.datatypes.binary:TwoBit from the datatype registry for extension twobit. +[2024-02-23 14:31:36,127: DEBUG/main] Retrieved datatype module galaxy.datatypes.binary:SQmass from the datatype registry for extension sqmass. +[2024-02-23 14:31:36,127: DEBUG/main] Retrieved datatype module galaxy.datatypes.binary:GeminiSQLite from the datatype registry for extension gemini.sqlite. +[2024-02-23 14:31:36,127: DEBUG/main] Retrieved datatype module galaxy.datatypes.binary:ChiraSQLite from the datatype registry for extension chira.sqlite. +[2024-02-23 14:31:36,127: DEBUG/main] Retrieved datatype module galaxy.datatypes.binary:CuffDiffSQlite from the datatype registry for extension cuffdiff.sqlite. +[2024-02-23 14:31:36,128: DEBUG/main] Retrieved datatype module galaxy.datatypes.binary:GAFASQLite from the datatype registry for extension gafa.sqlite. +[2024-02-23 14:31:36,128: DEBUG/main] Retrieved datatype module galaxy.datatypes.binary:NcbiTaxonomySQlite from the datatype registry for extension ncbitaxonomy.sqlite. +[2024-02-23 14:31:36,128: DEBUG/main] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension txt. +[2024-02-23 14:31:36,128: DEBUG/main] Retrieved datatype module galaxy.datatypes.data:LineCount from the datatype registry for extension linecount. +[2024-02-23 14:31:36,128: DEBUG/main] Retrieved datatype module galaxy.datatypes.sequence:MemePsp from the datatype registry for extension memepsp. +[2024-02-23 14:31:36,128: DEBUG/main] Retrieved datatype module galaxy.datatypes.xml:MEMEXml from the datatype registry for extension memexml. +[2024-02-23 14:31:36,128: DEBUG/main] Retrieved datatype module galaxy.datatypes.xml:CisML from the datatype registry for extension cisml. +[2024-02-23 14:31:36,128: DEBUG/main] Retrieved datatype module galaxy.datatypes.xml:GenericXml from the datatype registry for extension xml. +[2024-02-23 14:31:36,128: DEBUG/main] Retrieved datatype module galaxy.datatypes.xml:GenericXml from the datatype registry for extension xsd. +[2024-02-23 14:31:36,128: DEBUG/main] Retrieved datatype module galaxy.datatypes.xml:Dzi from the datatype registry for extension dzi. +[2024-02-23 14:31:36,128: DEBUG/main] Retrieved datatype module galaxy.datatypes.tabular:Vcf from the datatype registry for extension vcf. +[2024-02-23 14:31:36,128: DEBUG/main] Retrieved datatype module galaxy.datatypes.binary:Bcf from the datatype registry for extension bcf. +[2024-02-23 14:31:36,129: DEBUG/main] Retrieved datatype module galaxy.datatypes.binary:Bcf from the datatype registry for extension bcf_bgzip. +[2024-02-23 14:31:36,129: DEBUG/main] Retrieved datatype module galaxy.datatypes.binary:BcfUncompressed from the datatype registry for extension bcf_uncompressed. +[2024-02-23 14:31:36,129: DEBUG/main] Retrieved datatype module galaxy.datatypes.assembly:Velvet from the datatype registry for extension velvet. +[2024-02-23 14:31:36,129: DEBUG/main] Retrieved datatype module galaxy.datatypes.interval:Wiggle from the datatype registry for extension wig. +[2024-02-23 14:31:36,129: DEBUG/main] Retrieved datatype module galaxy.datatypes.binary:Binary from the datatype registry for extension interval_index. +[2024-02-23 14:31:36,129: DEBUG/main] Retrieved datatype module galaxy.datatypes.binary:Binary from the datatype registry for extension odgi. +[2024-02-23 14:31:36,129: DEBUG/main] Retrieved datatype module galaxy.datatypes.binary:CompressedArchive from the datatype registry for extension vg. +[2024-02-23 14:31:36,129: DEBUG/main] Retrieved datatype module galaxy.datatypes.binary:Binary from the datatype registry for extension xg. +[2024-02-23 14:31:36,129: DEBUG/main] Retrieved datatype module galaxy.datatypes.binary:Binary from the datatype registry for extension protobuf2. +[2024-02-23 14:31:36,130: DEBUG/main] Retrieved datatype module galaxy.datatypes.binary:Binary from the datatype registry for extension protobuf3. +[2024-02-23 14:31:36,130: DEBUG/main] Retrieved datatype module galaxy.datatypes.binary:Binary from the datatype registry for extension onnx. +[2024-02-23 14:31:36,130: DEBUG/main] Retrieved datatype module galaxy.datatypes.binary:Binary from the datatype registry for extension tabix. +[2024-02-23 14:31:36,130: DEBUG/main] Retrieved datatype module galaxy.datatypes.interval:IntervalTabix from the datatype registry for extension interval_tabix.gz. +[2024-02-23 14:31:36,130: DEBUG/main] Retrieved datatype module galaxy.datatypes.interval:JuicerMediumTabix from the datatype registry for extension juicer_medium_tabix.gz. +[2024-02-23 14:31:36,130: DEBUG/main] Retrieved datatype module galaxy.datatypes.interval:BedTabix from the datatype registry for extension bed_tabix.gz. +[2024-02-23 14:31:36,130: DEBUG/main] Retrieved datatype module galaxy.datatypes.interval:GffTabix from the datatype registry for extension gff_tabix.gz. +[2024-02-23 14:31:36,130: DEBUG/main] Retrieved datatype module galaxy.datatypes.binary:Binary from the datatype registry for extension bgzip. +[2024-02-23 14:31:36,130: DEBUG/main] Retrieved datatype module galaxy.datatypes.tabular:VcfGz from the datatype registry for extension vcf_bgzip. +[2024-02-23 14:31:36,130: DEBUG/main] Retrieved datatype module galaxy.datatypes.binary:Binary from the datatype registry for extension bus. +[2024-02-23 14:31:36,131: DEBUG/main] Retrieved datatype module galaxy.datatypes.binary:Binary from the datatype registry for extension kallisto.idx. +[2024-02-23 14:31:36,131: DEBUG/main] Retrieved datatype module galaxy.datatypes.xml:Phyloxml from the datatype registry for extension phyloxml. +[2024-02-23 14:31:36,131: DEBUG/main] Retrieved datatype module galaxy.datatypes.data:Newick from the datatype registry for extension newick. +[2024-02-23 14:31:36,131: DEBUG/main] Retrieved datatype module galaxy.datatypes.data:Newick from the datatype registry for extension nhx. +[2024-02-23 14:31:36,131: DEBUG/main] Retrieved datatype module galaxy.datatypes.data:Nexus from the datatype registry for extension nex. +[2024-02-23 14:31:36,131: DEBUG/main] Retrieved datatype module galaxy.datatypes.text:IQTree from the datatype registry for extension iqtree. +[2024-02-23 14:31:36,133: DEBUG/main] Retrieved datatype module galaxy.datatypes.mothur:SquareDistanceMatrix from the datatype registry for extension mldist. +[2024-02-23 14:31:36,135: DEBUG/main] Retrieved datatype module galaxy.datatypes.genetics:Affybatch from the datatype registry for extension affybatch. +[2024-02-23 14:31:36,135: DEBUG/main] Retrieved datatype module galaxy.datatypes.genetics:Eigenstratgeno from the datatype registry for extension eigenstratgeno. +[2024-02-23 14:31:36,136: DEBUG/main] Retrieved datatype module galaxy.datatypes.genetics:Eigenstratpca from the datatype registry for extension eigenstratpca. +[2024-02-23 14:31:36,136: DEBUG/main] Retrieved datatype module galaxy.datatypes.genetics:Eset from the datatype registry for extension eset. +[2024-02-23 14:31:36,136: DEBUG/main] Retrieved datatype module galaxy.datatypes.genetics:Fped from the datatype registry for extension fped. +[2024-02-23 14:31:36,136: DEBUG/main] Retrieved datatype module galaxy.datatypes.genetics:Fphe from the datatype registry for extension fphe. +[2024-02-23 14:31:36,136: DEBUG/main] Retrieved datatype module galaxy.datatypes.genetics:GenomeGraphs from the datatype registry for extension gg. +[2024-02-23 14:31:36,136: DEBUG/main] Retrieved datatype module galaxy.datatypes.genetics:ldIndep from the datatype registry for extension ldindep. +[2024-02-23 14:31:36,136: DEBUG/main] Retrieved datatype module galaxy.datatypes.genetics:MAlist from the datatype registry for extension malist. +[2024-02-23 14:31:36,136: DEBUG/main] Retrieved datatype module galaxy.datatypes.genetics:Lped from the datatype registry for extension lped. +[2024-02-23 14:31:36,136: DEBUG/main] Retrieved datatype module galaxy.datatypes.genetics:Pbed from the datatype registry for extension pbed. +[2024-02-23 14:31:36,136: DEBUG/main] Retrieved datatype module galaxy.datatypes.genetics:Pheno from the datatype registry for extension pheno. +[2024-02-23 14:31:36,136: DEBUG/main] Retrieved datatype module galaxy.datatypes.genetics:Pphe from the datatype registry for extension pphe. +[2024-02-23 14:31:36,137: DEBUG/main] Retrieved datatype module galaxy.datatypes.genetics:RexpBase from the datatype registry for extension rexpbase. +[2024-02-23 14:31:36,137: DEBUG/main] Retrieved datatype module galaxy.datatypes.genetics:Rgenetics from the datatype registry for extension rgenetics. +[2024-02-23 14:31:36,137: DEBUG/main] Retrieved datatype module galaxy.datatypes.genetics:Snptest from the datatype registry for extension snptest. +[2024-02-23 14:31:36,137: DEBUG/main] Retrieved datatype module galaxy.datatypes.genetics:SNPMatrix from the datatype registry for extension snpmatrix. +[2024-02-23 14:31:36,137: DEBUG/main] Retrieved datatype module galaxy.datatypes.binary:ExcelXls from the datatype registry for extension xls. +[2024-02-23 14:31:36,137: DEBUG/main] Retrieved datatype module galaxy.datatypes.text:Ipynb from the datatype registry for extension ipynb. +[2024-02-23 14:31:36,137: DEBUG/main] Retrieved datatype module galaxy.datatypes.text:Json from the datatype registry for extension json. +[2024-02-23 14:31:36,137: DEBUG/main] Retrieved datatype module galaxy.datatypes.text:ExpressionJson from the datatype registry for extension expression.json. +[2024-02-23 14:31:36,138: DEBUG/main] Retrieved datatype module galaxy.datatypes.graph:Xgmml from the datatype registry for extension xgmml. +[2024-02-23 14:31:36,138: DEBUG/main] Retrieved datatype module galaxy.datatypes.graph:Sif from the datatype registry for extension sif. +[2024-02-23 14:31:36,139: DEBUG/main] Retrieved datatype module galaxy.datatypes.triples:Triples from the datatype registry for extension triples. +[2024-02-23 14:31:36,139: DEBUG/main] Retrieved datatype module galaxy.datatypes.triples:HDT from the datatype registry for extension hdt. +[2024-02-23 14:31:36,140: DEBUG/main] Retrieved datatype module galaxy.datatypes.triples:NTriples from the datatype registry for extension nt. +[2024-02-23 14:31:36,140: DEBUG/main] Retrieved datatype module galaxy.datatypes.triples:N3 from the datatype registry for extension n3. +[2024-02-23 14:31:36,140: DEBUG/main] Retrieved datatype module galaxy.datatypes.triples:Turtle from the datatype registry for extension ttl. +[2024-02-23 14:31:36,140: DEBUG/main] Retrieved datatype module galaxy.datatypes.triples:Rdf from the datatype registry for extension rdf. +[2024-02-23 14:31:36,140: DEBUG/main] Retrieved datatype module galaxy.datatypes.triples:Jsonld from the datatype registry for extension jsonld. +[2024-02-23 14:31:36,140: DEBUG/main] Retrieved datatype module galaxy.datatypes.binary:ExcelXls from the datatype registry for extension excel.xls. +[2024-02-23 14:31:36,140: DEBUG/main] Retrieved datatype module galaxy.datatypes.binary:Xlsx from the datatype registry for extension xlsx. +[2024-02-23 14:31:36,140: DEBUG/main] Retrieved datatype module galaxy.datatypes.binary:Binary from the datatype registry for extension docx. +[2024-02-23 14:31:36,140: DEBUG/main] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension btwisted. +[2024-02-23 14:31:36,140: DEBUG/main] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension cai. +[2024-02-23 14:31:36,140: DEBUG/main] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension cat_db. +[2024-02-23 14:31:36,140: DEBUG/main] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension charge. +[2024-02-23 14:31:36,141: DEBUG/main] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension checktrans. +[2024-02-23 14:31:36,141: DEBUG/main] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension chips. +[2024-02-23 14:31:36,141: DEBUG/main] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension codcmp. +[2024-02-23 14:31:36,141: DEBUG/main] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension coderet. +[2024-02-23 14:31:36,141: DEBUG/main] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension compseq. +[2024-02-23 14:31:36,141: DEBUG/main] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension cpgplot. +[2024-02-23 14:31:36,141: DEBUG/main] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension cpgreport. +[2024-02-23 14:31:36,141: DEBUG/main] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension cusp. +[2024-02-23 14:31:36,141: DEBUG/main] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension cut. +[2024-02-23 14:31:36,141: DEBUG/main] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension dan. +[2024-02-23 14:31:36,141: DEBUG/main] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension digest. +[2024-02-23 14:31:36,142: DEBUG/main] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension dreg. +[2024-02-23 14:31:36,142: DEBUG/main] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension einverted. +[2024-02-23 14:31:36,142: DEBUG/main] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension epestfind. +[2024-02-23 14:31:36,142: DEBUG/main] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension equicktandem. +[2024-02-23 14:31:36,142: DEBUG/main] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension est2genome. +[2024-02-23 14:31:36,142: DEBUG/main] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension etandem. +[2024-02-23 14:31:36,142: DEBUG/main] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension freak. +[2024-02-23 14:31:36,142: DEBUG/main] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension fuzznuc. +[2024-02-23 14:31:36,142: DEBUG/main] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension fuzzpro. +[2024-02-23 14:31:36,142: DEBUG/main] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension fuzztran. +[2024-02-23 14:31:36,142: DEBUG/main] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension garnier. +[2024-02-23 14:31:36,143: DEBUG/main] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension geecee. +[2024-02-23 14:31:36,143: DEBUG/main] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension helixturnhelix. +[2024-02-23 14:31:36,143: DEBUG/main] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension hmoment. +[2024-02-23 14:31:36,143: DEBUG/main] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension isochore. +[2024-02-23 14:31:36,143: DEBUG/main] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension match. +[2024-02-23 14:31:36,143: DEBUG/main] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension nametable. +[2024-02-23 14:31:36,143: DEBUG/main] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension needle. +[2024-02-23 14:31:36,143: DEBUG/main] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension newcpgreport. +[2024-02-23 14:31:36,143: DEBUG/main] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension newcpgseek. +[2024-02-23 14:31:36,143: DEBUG/main] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension noreturn. +[2024-02-23 14:31:36,144: DEBUG/main] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension palindrome. +[2024-02-23 14:31:36,144: DEBUG/main] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension pepcoil. +[2024-02-23 14:31:36,144: DEBUG/main] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension pepinfo. +[2024-02-23 14:31:36,144: DEBUG/main] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension pepstats. +[2024-02-23 14:31:36,144: DEBUG/main] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension polydot. +[2024-02-23 14:31:36,144: DEBUG/main] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension preg. +[2024-02-23 14:31:36,144: DEBUG/main] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension prettyseq. +[2024-02-23 14:31:36,144: DEBUG/main] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension primersearch. +[2024-02-23 14:31:36,144: DEBUG/main] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension showfeat. +[2024-02-23 14:31:36,144: DEBUG/main] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension showorf. +[2024-02-23 14:31:36,144: DEBUG/main] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension sixpack. +[2024-02-23 14:31:36,145: DEBUG/main] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension strider. +[2024-02-23 14:31:36,145: DEBUG/main] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension supermatcher. +[2024-02-23 14:31:36,145: DEBUG/main] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension syco. +[2024-02-23 14:31:36,145: DEBUG/main] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension textsearch. +[2024-02-23 14:31:36,145: DEBUG/main] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension vectorstrip. +[2024-02-23 14:31:36,145: DEBUG/main] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension wobble. +[2024-02-23 14:31:36,145: DEBUG/main] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension wordcount. +[2024-02-23 14:31:36,145: DEBUG/main] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension dbmotif. +[2024-02-23 14:31:36,145: DEBUG/main] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension diffseq. +[2024-02-23 14:31:36,145: DEBUG/main] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension excel. +[2024-02-23 14:31:36,145: DEBUG/main] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension feattable. +[2024-02-23 14:31:36,146: DEBUG/main] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension motif. +[2024-02-23 14:31:36,146: DEBUG/main] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension regions. +[2024-02-23 14:31:36,146: DEBUG/main] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension seqtable. +[2024-02-23 14:31:36,146: DEBUG/main] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension simple. +[2024-02-23 14:31:36,146: DEBUG/main] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension table. +[2024-02-23 14:31:36,146: DEBUG/main] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension tagseq. +[2024-02-23 14:31:36,146: DEBUG/main] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension acedb. +[2024-02-23 14:31:36,146: DEBUG/main] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension clustal. +[2024-02-23 14:31:36,146: DEBUG/main] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension codata. +[2024-02-23 14:31:36,146: DEBUG/main] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension embl. +[2024-02-23 14:31:36,146: DEBUG/main] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension fitch. +[2024-02-23 14:31:36,147: DEBUG/main] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension gcg. +[2024-02-23 14:31:36,147: DEBUG/main] Retrieved datatype module galaxy.datatypes.sequence:Genbank from the datatype registry for extension genbank. +[2024-02-23 14:31:36,147: DEBUG/main] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension hennig86. +[2024-02-23 14:31:36,147: DEBUG/main] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension ig. +[2024-02-23 14:31:36,147: DEBUG/main] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension jackknifer. +[2024-02-23 14:31:36,147: DEBUG/main] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension jackknifernon. +[2024-02-23 14:31:36,147: DEBUG/main] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension mega. +[2024-02-23 14:31:36,147: DEBUG/main] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension meganon. +[2024-02-23 14:31:36,147: DEBUG/main] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension ncbi. +[2024-02-23 14:31:36,148: DEBUG/main] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension nexus. +[2024-02-23 14:31:36,148: DEBUG/main] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension nexusnon. +[2024-02-23 14:31:36,148: DEBUG/main] Retrieved datatype module galaxy.datatypes.phylip:Phylip from the datatype registry for extension phylip. +[2024-02-23 14:31:36,148: DEBUG/main] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension phylipnon. +[2024-02-23 14:31:36,148: DEBUG/main] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension pir. +[2024-02-23 14:31:36,148: DEBUG/main] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension staden. +[2024-02-23 14:31:36,149: DEBUG/main] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension swiss. +[2024-02-23 14:31:36,150: DEBUG/main] Retrieved datatype module galaxy.datatypes.msa:Msf from the datatype registry for extension msf. +[2024-02-23 14:31:36,150: DEBUG/main] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension markx0. +[2024-02-23 14:31:36,150: DEBUG/main] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension markx1. +[2024-02-23 14:31:36,150: DEBUG/main] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension markx10. +[2024-02-23 14:31:36,150: DEBUG/main] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension markx2. +[2024-02-23 14:31:36,150: DEBUG/main] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension markx3. +[2024-02-23 14:31:36,150: DEBUG/main] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension pair. +[2024-02-23 14:31:36,150: DEBUG/main] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension score. +[2024-02-23 14:31:36,150: DEBUG/main] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension srs. +[2024-02-23 14:31:36,151: DEBUG/main] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension srspair. +[2024-02-23 14:31:36,151: DEBUG/main] Retrieved datatype module galaxy.datatypes.annotation:SnapHmm from the datatype registry for extension snaphmm. +[2024-02-23 14:31:36,151: DEBUG/main] Retrieved datatype module galaxy.datatypes.annotation:Augustus from the datatype registry for extension augustus. +[2024-02-23 14:31:36,151: DEBUG/main] Retrieved datatype module galaxy.datatypes.binary:ICM from the datatype registry for extension icm. +[2024-02-23 14:31:36,151: DEBUG/main] Retrieved datatype module galaxy.datatypes.msa:InfernalCM from the datatype registry for extension cm. +[2024-02-23 14:31:36,151: DEBUG/main] Retrieved datatype module galaxy.datatypes.msa:Hmmer2 from the datatype registry for extension hmm2. +[2024-02-23 14:31:36,151: DEBUG/main] Retrieved datatype module galaxy.datatypes.msa:Hmmer3 from the datatype registry for extension hmm3. +[2024-02-23 14:31:36,151: DEBUG/main] Retrieved datatype module galaxy.datatypes.msa:Stockholm_1_0 from the datatype registry for extension stockholm. +[2024-02-23 14:31:36,152: DEBUG/main] Retrieved datatype module galaxy.datatypes.msa:MauveXmfa from the datatype registry for extension xmfa. +[2024-02-23 14:31:36,152: DEBUG/main] Retrieved datatype module galaxy.datatypes.microarrays:Cel from the datatype registry for extension cel. +[2024-02-23 14:31:36,152: DEBUG/main] Retrieved datatype module galaxy.datatypes.microarrays:Gpr from the datatype registry for extension gpr. +[2024-02-23 14:31:36,152: DEBUG/main] Retrieved datatype module galaxy.datatypes.microarrays:Gal from the datatype registry for extension gal. +[2024-02-23 14:31:36,152: DEBUG/main] Retrieved datatype module galaxy.datatypes.binary:RDS from the datatype registry for extension rds. +[2024-02-23 14:31:36,153: DEBUG/main] Retrieved datatype module galaxy.datatypes.binary:RDS from the datatype registry for extension phyloseq. +[2024-02-23 14:31:36,153: DEBUG/main] Retrieved datatype module galaxy.datatypes.binary:RData from the datatype registry for extension rdata. +[2024-02-23 14:31:36,153: DEBUG/main] Retrieved datatype module galaxy.datatypes.binary:RData from the datatype registry for extension rdata.sce. +[2024-02-23 14:31:36,153: DEBUG/main] Retrieved datatype module galaxy.datatypes.binary:RData from the datatype registry for extension rdata.xcms.raw. +[2024-02-23 14:31:36,153: DEBUG/main] Retrieved datatype module galaxy.datatypes.binary:RData from the datatype registry for extension rdata.msnbase.raw. +[2024-02-23 14:31:36,153: DEBUG/main] Retrieved datatype module galaxy.datatypes.binary:RData from the datatype registry for extension rdata.xcms.findchrompeaks. +[2024-02-23 14:31:36,153: DEBUG/main] Retrieved datatype module galaxy.datatypes.binary:RData from the datatype registry for extension rdata.xcms.group. +[2024-02-23 14:31:36,153: DEBUG/main] Retrieved datatype module galaxy.datatypes.binary:RData from the datatype registry for extension rdata.xcms.retcor. +[2024-02-23 14:31:36,153: DEBUG/main] Retrieved datatype module galaxy.datatypes.binary:RData from the datatype registry for extension rdata.xcms.fillpeaks. +[2024-02-23 14:31:36,153: DEBUG/main] Retrieved datatype module galaxy.datatypes.binary:RData from the datatype registry for extension rdata.camera.positive. +[2024-02-23 14:31:36,154: DEBUG/main] Retrieved datatype module galaxy.datatypes.binary:RData from the datatype registry for extension rdata.camera.negative. +[2024-02-23 14:31:36,154: DEBUG/main] Retrieved datatype module galaxy.datatypes.binary:RData from the datatype registry for extension rdata.camera.quick. +[2024-02-23 14:31:36,154: DEBUG/main] Retrieved datatype module galaxy.datatypes.hdf5:HDF5SummarizedExperiment from the datatype registry for extension rdata.se. +[2024-02-23 14:31:36,154: DEBUG/main] Retrieved datatype module galaxy.datatypes.binary:Binary from the datatype registry for extension rdock_as. +[2024-02-23 14:31:36,154: DEBUG/main] Retrieved datatype module galaxy.datatypes.binary:OxliCountGraph from the datatype registry for extension oxlicg. +[2024-02-23 14:31:36,154: DEBUG/main] Retrieved datatype module galaxy.datatypes.binary:OxliNodeGraph from the datatype registry for extension oxling. +[2024-02-23 14:31:36,154: DEBUG/main] Retrieved datatype module galaxy.datatypes.binary:OxliTagSet from the datatype registry for extension oxlits. +[2024-02-23 14:31:36,155: DEBUG/main] Retrieved datatype module galaxy.datatypes.binary:OxliStopTags from the datatype registry for extension oxlist. +[2024-02-23 14:31:36,155: DEBUG/main] Retrieved datatype module galaxy.datatypes.binary:OxliSubset from the datatype registry for extension oxliss. +[2024-02-23 14:31:36,155: DEBUG/main] Retrieved datatype module galaxy.datatypes.binary:OxliGraphLabels from the datatype registry for extension oxligl. +[2024-02-23 14:31:36,156: DEBUG/main] Retrieved datatype module galaxy.datatypes.constructive_solid_geometry:STL from the datatype registry for extension stl. +[2024-02-23 14:31:36,156: DEBUG/main] Retrieved datatype module galaxy.datatypes.constructive_solid_geometry:PlyAscii from the datatype registry for extension plyascii. +[2024-02-23 14:31:36,156: DEBUG/main] Retrieved datatype module galaxy.datatypes.constructive_solid_geometry:PlyBinary from the datatype registry for extension plybinary. +[2024-02-23 14:31:36,156: DEBUG/main] Retrieved datatype module galaxy.datatypes.constructive_solid_geometry:VtkAscii from the datatype registry for extension vtkascii. +[2024-02-23 14:31:36,156: DEBUG/main] Retrieved datatype module galaxy.datatypes.constructive_solid_geometry:VtkBinary from the datatype registry for extension vtkbinary. +[2024-02-23 14:31:36,157: DEBUG/main] Retrieved datatype module galaxy.datatypes.text:Biom1 from the datatype registry for extension biom1. +[2024-02-23 14:31:36,157: DEBUG/main] Retrieved datatype module galaxy.datatypes.binary:Biom2 from the datatype registry for extension biom2. +[2024-02-23 14:31:36,157: DEBUG/main] Retrieved datatype module galaxy.datatypes.binary:MashSketch from the datatype registry for extension msh. +[2024-02-23 14:31:36,157: DEBUG/main] Retrieved datatype module galaxy.datatypes.interval:ScIdx from the datatype registry for extension scidx. +[2024-02-23 14:31:36,164: DEBUG/main] Retrieved datatype module galaxy.datatypes.molecules:SMILES from the datatype registry for extension smi. +[2024-02-23 14:31:36,165: DEBUG/main] Retrieved datatype module galaxy.datatypes.molecules:SDF from the datatype registry for extension sdf. +[2024-02-23 14:31:36,165: DEBUG/main] Retrieved datatype module galaxy.datatypes.molecules:InChI from the datatype registry for extension inchi. +[2024-02-23 14:31:36,165: DEBUG/main] Retrieved datatype module galaxy.datatypes.molecules:MOL from the datatype registry for extension mol. +[2024-02-23 14:31:36,165: DEBUG/main] Retrieved datatype module galaxy.datatypes.molecules:MOL2 from the datatype registry for extension mol2. +[2024-02-23 14:31:36,165: DEBUG/main] Retrieved datatype module galaxy.datatypes.molecules:CML from the datatype registry for extension cml. +[2024-02-23 14:31:36,165: DEBUG/main] Retrieved datatype module galaxy.datatypes.molecules:FPS from the datatype registry for extension fps. +[2024-02-23 14:31:36,166: DEBUG/main] Retrieved datatype module galaxy.datatypes.molecules:OBFS from the datatype registry for extension obfs. +[2024-02-23 14:31:36,166: DEBUG/main] Retrieved datatype module galaxy.datatypes.molecules:DRF from the datatype registry for extension drf. +[2024-02-23 14:31:36,166: DEBUG/main] Retrieved datatype module galaxy.datatypes.molecules:PHAR from the datatype registry for extension phar. +[2024-02-23 14:31:36,166: DEBUG/main] Retrieved datatype module galaxy.datatypes.molecules:PDB from the datatype registry for extension pdb. +[2024-02-23 14:31:36,166: DEBUG/main] Retrieved datatype module galaxy.datatypes.molecules:PDBQT from the datatype registry for extension pdbqt. +[2024-02-23 14:31:36,166: DEBUG/main] Retrieved datatype module galaxy.datatypes.molecules:PQR from the datatype registry for extension pqr. +[2024-02-23 14:31:36,166: DEBUG/main] Retrieved datatype module galaxy.datatypes.molecules:Cell from the datatype registry for extension cell. +[2024-02-23 14:31:36,166: DEBUG/main] Retrieved datatype module galaxy.datatypes.molecules:CIF from the datatype registry for extension cif. +[2024-02-23 14:31:36,166: DEBUG/main] Retrieved datatype module galaxy.datatypes.molecules:XYZ from the datatype registry for extension xyz. +[2024-02-23 14:31:36,166: DEBUG/main] Retrieved datatype module galaxy.datatypes.molecules:ExtendedXYZ from the datatype registry for extension extxyz. +[2024-02-23 14:31:36,166: DEBUG/main] Retrieved datatype module galaxy.datatypes.binary:Trr from the datatype registry for extension trr. +[2024-02-23 14:31:36,167: DEBUG/main] Retrieved datatype module galaxy.datatypes.binary:Dcd from the datatype registry for extension dcd. +[2024-02-23 14:31:36,167: DEBUG/main] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension top. +[2024-02-23 14:31:36,167: DEBUG/main] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension prmtop. +[2024-02-23 14:31:36,167: DEBUG/main] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension itp. +[2024-02-23 14:31:36,167: DEBUG/main] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension mdp. +[2024-02-23 14:31:36,167: DEBUG/main] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension ndx. +[2024-02-23 14:31:36,167: DEBUG/main] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension xvg. +[2024-02-23 14:31:36,167: DEBUG/main] Retrieved datatype module galaxy.datatypes.binary:Xtc from the datatype registry for extension xtc. +[2024-02-23 14:31:36,167: DEBUG/main] Retrieved datatype module galaxy.datatypes.binary:Cpt from the datatype registry for extension cpt. +[2024-02-23 14:31:36,168: DEBUG/main] Retrieved datatype module galaxy.datatypes.binary:Edr from the datatype registry for extension edr. +[2024-02-23 14:31:36,168: DEBUG/main] Retrieved datatype module galaxy.datatypes.binary:Binary from the datatype registry for extension tpr. +[2024-02-23 14:31:36,168: DEBUG/main] Retrieved datatype module galaxy.datatypes.molecules:GRO from the datatype registry for extension gro. +[2024-02-23 14:31:36,168: DEBUG/main] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension inpcrd. +[2024-02-23 14:31:36,168: DEBUG/main] Retrieved datatype module galaxy.datatypes.binary:Vel from the datatype registry for extension vel. +[2024-02-23 14:31:36,168: DEBUG/main] Retrieved datatype module galaxy.datatypes.molecules:grd from the datatype registry for extension grd. +[2024-02-23 14:31:36,168: DEBUG/main] Retrieved datatype module galaxy.datatypes.molecules:grdtgz from the datatype registry for extension grd.tgz. +[2024-02-23 14:31:36,168: DEBUG/main] Retrieved datatype module galaxy.datatypes.mothur:Otu from the datatype registry for extension mothur.otu. +[2024-02-23 14:31:36,168: DEBUG/main] Retrieved datatype module galaxy.datatypes.mothur:Otu from the datatype registry for extension mothur.list. +[2024-02-23 14:31:36,169: DEBUG/main] Retrieved datatype module galaxy.datatypes.mothur:Sabund from the datatype registry for extension mothur.sabund. +[2024-02-23 14:31:36,169: DEBUG/main] Retrieved datatype module galaxy.datatypes.mothur:Sabund from the datatype registry for extension mothur.rabund. +[2024-02-23 14:31:36,169: DEBUG/main] Retrieved datatype module galaxy.datatypes.mothur:GroupAbund from the datatype registry for extension mothur.shared. +[2024-02-23 14:31:36,169: DEBUG/main] Retrieved datatype module galaxy.datatypes.mothur:GroupAbund from the datatype registry for extension mothur.relabund. +[2024-02-23 14:31:36,169: DEBUG/main] Retrieved datatype module galaxy.datatypes.mothur:Names from the datatype registry for extension mothur.names. +[2024-02-23 14:31:36,169: DEBUG/main] Retrieved datatype module galaxy.datatypes.mothur:Group from the datatype registry for extension mothur.design. +[2024-02-23 14:31:36,169: DEBUG/main] Retrieved datatype module galaxy.datatypes.mothur:Summary from the datatype registry for extension mothur.summary. +[2024-02-23 14:31:36,169: DEBUG/main] Retrieved datatype module galaxy.datatypes.mothur:Group from the datatype registry for extension mothur.groups. +[2024-02-23 14:31:36,169: DEBUG/main] Retrieved datatype module galaxy.datatypes.mothur:Oligos from the datatype registry for extension mothur.oligos. +[2024-02-23 14:31:36,170: DEBUG/main] Retrieved datatype module galaxy.datatypes.sequence:Fasta from the datatype registry for extension mothur.align. +[2024-02-23 14:31:36,170: DEBUG/main] Retrieved datatype module galaxy.datatypes.mothur:AccNos from the datatype registry for extension mothur.accnos. +[2024-02-23 14:31:36,170: DEBUG/main] Retrieved datatype module galaxy.datatypes.mothur:AccNos from the datatype registry for extension mothur.otulabels. +[2024-02-23 14:31:36,170: DEBUG/main] Retrieved datatype module galaxy.datatypes.tabular:Tabular from the datatype registry for extension mothur.otu.corr. +[2024-02-23 14:31:36,170: DEBUG/main] Retrieved datatype module galaxy.datatypes.mothur:SecondaryStructureMap from the datatype registry for extension mothur.map. +[2024-02-23 14:31:36,170: DEBUG/main] Retrieved datatype module galaxy.datatypes.mothur:AlignCheck from the datatype registry for extension mothur.align.check. +[2024-02-23 14:31:36,170: DEBUG/main] Retrieved datatype module galaxy.datatypes.mothur:AlignReport from the datatype registry for extension mothur.align.report. +[2024-02-23 14:31:36,170: DEBUG/main] Retrieved datatype module galaxy.datatypes.mothur:LaneMask from the datatype registry for extension mothur.filter. +[2024-02-23 14:31:36,170: DEBUG/main] Retrieved datatype module galaxy.datatypes.mothur:DistanceMatrix from the datatype registry for extension mothur.dist. +[2024-02-23 14:31:36,170: DEBUG/main] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension mothur.tre. +[2024-02-23 14:31:36,171: DEBUG/main] Retrieved datatype module galaxy.datatypes.mothur:PairwiseDistanceMatrix from the datatype registry for extension mothur.pair.dist. +[2024-02-23 14:31:36,171: DEBUG/main] Retrieved datatype module galaxy.datatypes.mothur:SquareDistanceMatrix from the datatype registry for extension mothur.square.dist. +[2024-02-23 14:31:36,171: DEBUG/main] Retrieved datatype module galaxy.datatypes.mothur:LowerTriangleDistanceMatrix from the datatype registry for extension mothur.lower.dist. +[2024-02-23 14:31:36,171: DEBUG/main] Retrieved datatype module galaxy.datatypes.mothur:RefTaxonomy from the datatype registry for extension mothur.ref.taxonomy. +[2024-02-23 14:31:36,171: DEBUG/main] Retrieved datatype module galaxy.datatypes.mothur:RefTaxonomy from the datatype registry for extension mothur.seq.taxonomy. +[2024-02-23 14:31:36,171: DEBUG/main] Retrieved datatype module galaxy.datatypes.mothur:RefTaxonomy from the datatype registry for extension mothur.rdp.taxonomy. +[2024-02-23 14:31:36,171: DEBUG/main] Retrieved datatype module galaxy.datatypes.mothur:ConsensusTaxonomy from the datatype registry for extension mothur.cons.taxonomy. +[2024-02-23 14:31:36,171: DEBUG/main] Retrieved datatype module galaxy.datatypes.mothur:TaxonomySummary from the datatype registry for extension mothur.tax.summary. +[2024-02-23 14:31:36,171: DEBUG/main] Retrieved datatype module galaxy.datatypes.mothur:Frequency from the datatype registry for extension mothur.freq. +[2024-02-23 14:31:36,171: DEBUG/main] Retrieved datatype module galaxy.datatypes.mothur:Quantile from the datatype registry for extension mothur.quan. +[2024-02-23 14:31:36,172: DEBUG/main] Retrieved datatype module galaxy.datatypes.mothur:Quantile from the datatype registry for extension mothur.filtered.quan. +[2024-02-23 14:31:36,172: DEBUG/main] Retrieved datatype module galaxy.datatypes.mothur:Quantile from the datatype registry for extension mothur.masked.quan. +[2024-02-23 14:31:36,172: DEBUG/main] Retrieved datatype module galaxy.datatypes.mothur:Quantile from the datatype registry for extension mothur.filtered.masked.quan. +[2024-02-23 14:31:36,172: DEBUG/main] Retrieved datatype module galaxy.datatypes.mothur:Axes from the datatype registry for extension mothur.axes. +[2024-02-23 14:31:36,172: DEBUG/main] Retrieved datatype module galaxy.datatypes.mothur:SffFlow from the datatype registry for extension mothur.sff.flow. +[2024-02-23 14:31:36,172: DEBUG/main] Retrieved datatype module galaxy.datatypes.mothur:CountTable from the datatype registry for extension mothur.count_table. +[2024-02-23 14:31:36,174: DEBUG/main] Retrieved datatype module galaxy.datatypes.neo4j:Neo4jDB from the datatype registry for extension neostore. +[2024-02-23 14:31:36,174: DEBUG/main] Retrieved datatype module galaxy.datatypes.neo4j:Neo4jDBzip from the datatype registry for extension neostore.zip. +[2024-02-23 14:31:36,175: DEBUG/main] Retrieved datatype module galaxy.datatypes.tracks:UCSCTrackHub from the datatype registry for extension trackhub. +[2024-02-23 14:31:36,175: DEBUG/main] Retrieved datatype module galaxy.datatypes.blast:BlastXml from the datatype registry for extension blastxml. +[2024-02-23 14:31:36,176: DEBUG/main] Retrieved datatype module galaxy.datatypes.blast:BlastNucDb from the datatype registry for extension blastdbn. +[2024-02-23 14:31:36,176: DEBUG/main] Retrieved datatype module galaxy.datatypes.blast:BlastProtDb from the datatype registry for extension blastdbp. +[2024-02-23 14:31:36,176: DEBUG/main] Retrieved datatype module galaxy.datatypes.blast:BlastDomainDb from the datatype registry for extension blastdbd. +[2024-02-23 14:31:36,176: DEBUG/main] Retrieved datatype module galaxy.datatypes.blast:LastDb from the datatype registry for extension lastdb. +[2024-02-23 14:31:36,176: DEBUG/main] Retrieved datatype module galaxy.datatypes.blast:BlastNucDb5 from the datatype registry for extension blastdbn5. +[2024-02-23 14:31:36,176: DEBUG/main] Retrieved datatype module galaxy.datatypes.blast:BlastProtDb5 from the datatype registry for extension blastdbp5. +[2024-02-23 14:31:36,176: DEBUG/main] Retrieved datatype module galaxy.datatypes.blast:BlastDomainDb5 from the datatype registry for extension blastdbd5. +[2024-02-23 14:31:36,176: DEBUG/main] Retrieved datatype module galaxy.datatypes.data:GenericAsn1 from the datatype registry for extension maskinfo-asn1. +[2024-02-23 14:31:36,177: DEBUG/main] Retrieved datatype module galaxy.datatypes.binary:GenericAsn1Binary from the datatype registry for extension maskinfo-asn1-binary. +[2024-02-23 14:31:36,177: DEBUG/main] Retrieved datatype module galaxy.datatypes.data:GenericAsn1 from the datatype registry for extension pssm-asn1. +[2024-02-23 14:31:36,177: DEBUG/main] Retrieved datatype module galaxy.datatypes.plant_tribes:PlantTribesKsComponents from the datatype registry for extension ptkscmp. +[2024-02-23 14:31:36,177: DEBUG/main] Retrieved datatype module galaxy.datatypes.plant_tribes:Smat from the datatype registry for extension smat. +[2024-02-23 14:31:36,177: DEBUG/main] Retrieved datatype module galaxy.datatypes.genetics:GenotypeMatrix from the datatype registry for extension alohomora_gts. +[2024-02-23 14:31:36,178: DEBUG/main] Retrieved datatype module galaxy.datatypes.tabular:Tabular from the datatype registry for extension alohomora_map. +[2024-02-23 14:31:36,178: DEBUG/main] Retrieved datatype module galaxy.datatypes.tabular:Tabular from the datatype registry for extension alohomora_maf. +[2024-02-23 14:31:36,178: DEBUG/main] Retrieved datatype module galaxy.datatypes.tabular:Tabular from the datatype registry for extension alohomora_ped. +[2024-02-23 14:31:36,178: DEBUG/main] Retrieved datatype module galaxy.datatypes.tabular:Tabular from the datatype registry for extension linkage_pedin. +[2024-02-23 14:31:36,178: DEBUG/main] Retrieved datatype module galaxy.datatypes.genetics:DataIn from the datatype registry for extension linkage_datain. +[2024-02-23 14:31:36,178: DEBUG/main] Retrieved datatype module galaxy.datatypes.genetics:MarkerMap from the datatype registry for extension linkage_map. +[2024-02-23 14:31:36,178: DEBUG/main] Retrieved datatype module galaxy.datatypes.tabular:Tabular from the datatype registry for extension allegro_ihaplo. +[2024-02-23 14:31:36,178: DEBUG/main] Retrieved datatype module galaxy.datatypes.tabular:Tabular from the datatype registry for extension allegro_descent. +[2024-02-23 14:31:36,179: DEBUG/main] Retrieved datatype module galaxy.datatypes.genetics:AllegroLOD from the datatype registry for extension allegro_fparam. +[2024-02-23 14:31:36,179: DEBUG/main] Retrieved datatype module galaxy.datatypes.genetics:IdeasPre from the datatype registry for extension ideaspre. +[2024-02-23 14:31:36,179: DEBUG/main] Retrieved datatype module galaxy.datatypes.xml:Sbml from the datatype registry for extension sbml. +[2024-02-23 14:31:36,179: DEBUG/main] Retrieved datatype module galaxy.datatypes.spaln:SpalnNuclDb from the datatype registry for extension spalndbnp. +[2024-02-23 14:31:36,179: DEBUG/main] Retrieved datatype module galaxy.datatypes.spaln:SpalnProtDb from the datatype registry for extension spalndba. +[2024-02-23 14:31:36,180: DEBUG/main] Retrieved datatype module galaxy.datatypes.binary:RDS from the datatype registry for extension dada2_dada. +[2024-02-23 14:31:36,180: DEBUG/main] Retrieved datatype module galaxy.datatypes.binary:RDS from the datatype registry for extension dada2_errorrates. +[2024-02-23 14:31:36,180: DEBUG/main] Retrieved datatype module galaxy.datatypes.binary:RDS from the datatype registry for extension dada2_mergepairs. +[2024-02-23 14:31:36,180: DEBUG/main] Retrieved datatype module galaxy.datatypes.tabular:Tabular from the datatype registry for extension dada2_sequencetable. +[2024-02-23 14:31:36,180: DEBUG/main] Retrieved datatype module galaxy.datatypes.tabular:Tabular from the datatype registry for extension dada2_uniques. +[2024-02-23 14:31:36,180: DEBUG/main] Retrieved datatype module galaxy.datatypes.binary:RDS from the datatype registry for extension ampvis2. +[2024-02-23 14:31:36,180: DEBUG/main] Retrieved datatype module galaxy.datatypes.binary:Binary from the datatype registry for extension ckpt. +[2024-02-23 14:31:36,180: DEBUG/main] Retrieved datatype module galaxy.datatypes.binary:Binary from the datatype registry for extension tgz. +[2024-02-23 14:31:36,192: DEBUG/main] Retrieved datatype module galaxy.datatypes.media:Wav from the datatype registry for extension wav. +[2024-02-23 14:31:36,192: DEBUG/main] Retrieved datatype module galaxy.datatypes.media:Mp3 from the datatype registry for extension mp3. +[2024-02-23 14:31:36,193: DEBUG/main] Retrieved datatype module galaxy.datatypes.media:Mkv from the datatype registry for extension mkv. +[2024-02-23 14:31:36,193: DEBUG/main] Retrieved datatype module galaxy.datatypes.media:Mp4 from the datatype registry for extension mp4. +[2024-02-23 14:31:36,193: DEBUG/main] Retrieved datatype module galaxy.datatypes.media:Flv from the datatype registry for extension flv. +[2024-02-23 14:31:36,193: DEBUG/main] Retrieved datatype module galaxy.datatypes.media:Mpg from the datatype registry for extension mpg. +[2024-02-23 14:31:36,195: DEBUG/main] Retrieved datatype module galaxy.datatypes.speech:TextGrid from the datatype registry for extension textgrid. +[2024-02-23 14:31:36,195: DEBUG/main] Retrieved datatype module galaxy.datatypes.speech:BPF from the datatype registry for extension par. +[2024-02-23 14:31:36,195: DEBUG/main] Retrieved datatype module galaxy.datatypes.tabular:Tabular from the datatype registry for extension ffindex. +[2024-02-23 14:31:36,196: DEBUG/main] Retrieved datatype module galaxy.datatypes.data:Data from the datatype registry for extension ffdata. +[2024-02-23 14:31:36,196: DEBUG/main] Retrieved datatype module galaxy.datatypes.binary:Pretext from the datatype registry for extension pretext. +[2024-02-23 14:31:36,196: DEBUG/main] Retrieved datatype module galaxy.datatypes.text:Html from the datatype registry for extension immuneml_receptors.html. +[2024-02-23 14:31:36,197: DEBUG/main] Retrieved datatype module galaxy.datatypes.binary:HexrdMaterials from the datatype registry for extension hexrd.materials.h5. +[2024-02-23 14:31:36,197: DEBUG/main] Retrieved datatype module galaxy.datatypes.binary:Npz from the datatype registry for extension npz. +[2024-02-23 14:31:36,197: DEBUG/main] Retrieved datatype module galaxy.datatypes.binary:HexrdImagesNpz from the datatype registry for extension hexrd.images.npz. +[2024-02-23 14:31:36,197: DEBUG/main] Retrieved datatype module galaxy.datatypes.binary:HexrdEtaOmeNpz from the datatype registry for extension hexrd.eta_ome.npz. +[2024-02-23 14:31:36,198: DEBUG/main] Retrieved datatype module galaxy.datatypes.binary:Npz from the datatype registry for extension hexrd.scored_orientations.npz. +[2024-02-23 14:31:36,198: DEBUG/main] Retrieved datatype module galaxy.datatypes.tabular:Tabular from the datatype registry for extension hexrd.accepted_orientations. +[2024-02-23 14:31:36,198: DEBUG/main] Retrieved datatype module galaxy.datatypes.text:Yaml from the datatype registry for extension hexrd.yml. +[2024-02-23 14:31:36,199: DEBUG/main] Retrieved datatype module galaxy.datatypes.constructive_solid_geometry:NeperTess from the datatype registry for extension neper.tess. +[2024-02-23 14:31:36,199: DEBUG/main] Retrieved datatype module galaxy.datatypes.constructive_solid_geometry:NeperTesr from the datatype registry for extension neper.tesr. +[2024-02-23 14:31:36,199: DEBUG/main] Retrieved datatype module galaxy.datatypes.constructive_solid_geometry:NeperPoints from the datatype registry for extension neper.points. +[2024-02-23 14:31:36,199: DEBUG/main] Retrieved datatype module galaxy.datatypes.constructive_solid_geometry:NeperPointsTabular from the datatype registry for extension neper.points.tsv. +[2024-02-23 14:31:36,199: DEBUG/main] Retrieved datatype module galaxy.datatypes.constructive_solid_geometry:NeperMultiScaleCell from the datatype registry for extension neper.mscell. +[2024-02-23 14:31:36,200: DEBUG/main] Retrieved datatype module galaxy.datatypes.constructive_solid_geometry:GmshMsh from the datatype registry for extension gmsh.msh. +[2024-02-23 14:31:36,200: DEBUG/main] Retrieved datatype module galaxy.datatypes.constructive_solid_geometry:GmshGeo from the datatype registry for extension gmsh.geo. +[2024-02-23 14:31:36,200: DEBUG/main] Retrieved datatype module galaxy.datatypes.constructive_solid_geometry:ZsetGeof from the datatype registry for extension zset.geof. +[2024-02-23 14:31:36,200: DEBUG/main] Retrieved datatype module galaxy.datatypes.binary:Binary from the datatype registry for extension stl. +[2024-02-23 14:31:36,200: DEBUG/main] Overriding conflicting datatype with extension 'stl', using datatype from /scratch/rico/galaxy/lib/galaxy/config/sample/datatypes_conf.xml.sample. +[2024-02-23 14:31:36,201: DEBUG/main] Retrieved datatype module galaxy.datatypes.text:Text from the datatype registry for extension pov. +[2024-02-23 14:31:36,201: DEBUG/main] Retrieved datatype module galaxy.datatypes.text:PithyaResult from the datatype registry for extension pithya.result. +[2024-02-23 14:31:36,201: DEBUG/main] Retrieved datatype module galaxy.datatypes.text:PithyaProperty from the datatype registry for extension pithya.property. +[2024-02-23 14:31:36,201: DEBUG/main] Retrieved datatype module galaxy.datatypes.text:PithyaModel from the datatype registry for extension pithya.model. +[2024-02-23 14:31:36,202: DEBUG/main] Retrieved datatype module galaxy.datatypes.text:BCSLts from the datatype registry for extension bcsl.ts. +[2024-02-23 14:31:36,202: DEBUG/main] Retrieved datatype module galaxy.datatypes.text:BCSLmodel from the datatype registry for extension bcsl.model. +[2024-02-23 14:31:36,202: DEBUG/main] Retrieved datatype module galaxy.datatypes.text:StormSample from the datatype registry for extension storm.sample. +[2024-02-23 14:31:36,202: DEBUG/main] Retrieved datatype module galaxy.datatypes.text:StormCheck from the datatype registry for extension storm.check. +[2024-02-23 14:31:36,202: DEBUG/main] Retrieved datatype module galaxy.datatypes.text:CTLresult from the datatype registry for extension ctl.result. +[2024-02-23 14:31:36,202: DEBUG/main] Retrieved datatype module galaxy.datatypes.text:Castep from the datatype registry for extension castep. +[2024-02-23 14:31:36,202: DEBUG/main] Retrieved datatype module galaxy.datatypes.text:Param from the datatype registry for extension param. +[2024-02-23 14:31:36,202: DEBUG/main] Retrieved datatype module galaxy.datatypes.text:FormattedDensity from the datatype registry for extension den_fmt. +[2024-02-23 14:31:36,203: DEBUG/main] Retrieved datatype module galaxy.datatypes.larch:AthenaProject from the datatype registry for extension prj. +[2024-02-23 14:31:36,203: DEBUG/main] Retrieved datatype module galaxy.datatypes.larch:FEFFInput from the datatype registry for extension inp. +[2024-02-23 14:31:36,203: DEBUG/main] Retrieved datatype module galaxy.datatypes.tabular:CSV from the datatype registry for extension sp. +[2024-02-23 14:31:36,203: DEBUG/main] Retrieved datatype module galaxy.datatypes.tabular:CSV from the datatype registry for extension gds. +[2024-02-23 14:31:36,203: DEBUG/main] Retrieved datatype module galaxy.datatypes.tabular:CSV from the datatype registry for extension feff. +[2024-02-23 14:31:36,203: DEBUG/main] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension feffit. +[2024-02-23 14:31:36,203: DEBUG/main] Retrieved datatype module galaxy.datatypes.binary:Binary from the datatype registry for extension bil. +[2024-02-23 14:31:36,204: DEBUG/main] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension hdr. +[2024-02-23 14:31:36,204: DEBUG/main] Retrieved datatype module galaxy.datatypes.gis:Shapefile from the datatype registry for extension shp. +[2024-02-23 14:31:36,204: DEBUG/main] Retrieved datatype module galaxy.datatypes.binary:FITS from the datatype registry for extension fits. +[2024-02-23 14:31:36,205: DEBUG/main] Retrieved datatype module galaxy.datatypes.chain:Chain from the datatype registry for extension chain. +[2024-02-23 14:31:36,205: DEBUG/main] Loaded sniffer for datatype 'galaxy.datatypes.plant_tribes:PlantTribesKsComponents' +[2024-02-23 14:31:36,205: DEBUG/main] Loaded sniffer for datatype 'galaxy.datatypes.plant_tribes:Smat' +[2024-02-23 14:31:36,205: DEBUG/main] Loaded sniffer for datatype 'galaxy.datatypes.mothur:Sabund' +[2024-02-23 14:31:36,205: DEBUG/main] Loaded sniffer for datatype 'galaxy.datatypes.mothur:Otu' +[2024-02-23 14:31:36,205: DEBUG/main] Loaded sniffer for datatype 'galaxy.datatypes.mothur:GroupAbund' +[2024-02-23 14:31:36,205: DEBUG/main] Loaded sniffer for datatype 'galaxy.datatypes.mothur:SecondaryStructureMap' +[2024-02-23 14:31:36,205: DEBUG/main] Loaded sniffer for datatype 'galaxy.datatypes.mothur:LowerTriangleDistanceMatrix' +[2024-02-23 14:31:36,205: DEBUG/main] Loaded sniffer for datatype 'galaxy.datatypes.mothur:SquareDistanceMatrix' +[2024-02-23 14:31:36,205: DEBUG/main] Loaded sniffer for datatype 'galaxy.datatypes.mothur:PairwiseDistanceMatrix' +[2024-02-23 14:31:36,205: DEBUG/main] Loaded sniffer for datatype 'galaxy.datatypes.mothur:Oligos' +[2024-02-23 14:31:36,205: DEBUG/main] Loaded sniffer for datatype 'galaxy.datatypes.mothur:Quantile' +[2024-02-23 14:31:36,206: DEBUG/main] Loaded sniffer for datatype 'galaxy.datatypes.mothur:Frequency' +[2024-02-23 14:31:36,206: DEBUG/main] Loaded sniffer for datatype 'galaxy.datatypes.mothur:LaneMask' +[2024-02-23 14:31:36,206: DEBUG/main] Loaded sniffer for datatype 'galaxy.datatypes.mothur:RefTaxonomy' +[2024-02-23 14:31:36,206: DEBUG/main] Loaded sniffer for datatype 'galaxy.datatypes.mothur:Axes' +[2024-02-23 14:31:36,206: DEBUG/main] Loaded sniffer for datatype 'galaxy.datatypes.constructive_solid_geometry:PlyAscii' +[2024-02-23 14:31:36,206: DEBUG/main] Loaded sniffer for datatype 'galaxy.datatypes.constructive_solid_geometry:PlyBinary' +[2024-02-23 14:31:36,206: DEBUG/main] Loaded sniffer for datatype 'galaxy.datatypes.constructive_solid_geometry:VtkAscii' +[2024-02-23 14:31:36,206: DEBUG/main] Loaded sniffer for datatype 'galaxy.datatypes.constructive_solid_geometry:VtkBinary' +[2024-02-23 14:31:36,206: DEBUG/main] Loaded sniffer for datatype 'galaxy.datatypes.constructive_solid_geometry:NeperTess' +[2024-02-23 14:31:36,206: DEBUG/main] Loaded sniffer for datatype 'galaxy.datatypes.constructive_solid_geometry:NeperTesr' +[2024-02-23 14:31:36,206: DEBUG/main] Loaded sniffer for datatype 'galaxy.datatypes.constructive_solid_geometry:GmshMsh' +[2024-02-23 14:31:36,206: DEBUG/main] Loaded sniffer for datatype 'galaxy.datatypes.goldenpath:GoldenPath' +[2024-02-23 14:31:36,206: DEBUG/main] Loaded sniffer for datatype 'galaxy.datatypes.interval:ScIdx' +[2024-02-23 14:31:36,206: DEBUG/main] Loaded sniffer for datatype 'galaxy.datatypes.tabular:Vcf' +[2024-02-23 14:31:36,206: DEBUG/main] Loaded sniffer for datatype 'galaxy.datatypes.binary:JP2' +[2024-02-23 14:31:36,206: DEBUG/main] Loaded sniffer for datatype 'galaxy.datatypes.binary:TwoBit' +[2024-02-23 14:31:36,206: DEBUG/main] Loaded sniffer for datatype 'galaxy.datatypes.binary:GeminiSQLite' +[2024-02-23 14:31:36,206: DEBUG/main] Loaded sniffer for datatype 'galaxy.datatypes.binary:SQmass' +[2024-02-23 14:31:36,206: DEBUG/main] Loaded sniffer for datatype 'galaxy.datatypes.binary:MzSQlite' +[2024-02-23 14:31:36,206: DEBUG/main] Loaded sniffer for datatype 'galaxy.datatypes.binary:OSW' +[2024-02-23 14:31:36,207: DEBUG/main] Loaded sniffer for datatype 'galaxy.datatypes.binary:PQP' +[2024-02-23 14:31:36,207: DEBUG/main] Loaded sniffer for datatype 'galaxy.datatypes.binary:IdpDB' +[2024-02-23 14:31:36,207: DEBUG/main] Loaded sniffer for datatype 'galaxy.datatypes.binary:ElibSQlite' +[2024-02-23 14:31:36,207: DEBUG/main] Loaded sniffer for datatype 'galaxy.datatypes.binary:DlibSQlite' +[2024-02-23 14:31:36,207: DEBUG/main] Loaded sniffer for datatype 'galaxy.datatypes.binary:BlibSQlite' +[2024-02-23 14:31:36,207: DEBUG/main] Loaded sniffer for datatype 'galaxy.datatypes.binary:ChiraSQLite' +[2024-02-23 14:31:36,207: DEBUG/main] Loaded sniffer for datatype 'galaxy.datatypes.binary:CuffDiffSQlite' +[2024-02-23 14:31:36,207: DEBUG/main] Loaded sniffer for datatype 'galaxy.datatypes.binary:GAFASQLite' +[2024-02-23 14:31:36,207: DEBUG/main] Loaded sniffer for datatype 'galaxy.datatypes.binary:NcbiTaxonomySQlite' +[2024-02-23 14:31:36,207: DEBUG/main] Loaded sniffer for datatype 'galaxy.datatypes.binary:SQlite' +[2024-02-23 14:31:36,207: DEBUG/main] Loaded sniffer for datatype 'galaxy.datatypes.binary:H5MLM' +[2024-02-23 14:31:36,207: DEBUG/main] Loaded sniffer for datatype 'galaxy.datatypes.binary:Cool' +[2024-02-23 14:31:36,207: DEBUG/main] Loaded sniffer for datatype 'galaxy.datatypes.binary:MCool' +[2024-02-23 14:31:36,207: DEBUG/main] Loaded sniffer for datatype 'galaxy.datatypes.binary:Loom' +[2024-02-23 14:31:36,207: DEBUG/main] Loaded sniffer for datatype 'galaxy.datatypes.binary:Anndata' +[2024-02-23 14:31:36,207: DEBUG/main] Loaded sniffer for datatype 'galaxy.datatypes.binary:Biom2' +[2024-02-23 14:31:36,207: DEBUG/main] Loaded sniffer for datatype 'galaxy.datatypes.binary:HexrdMaterials' +[2024-02-23 14:31:36,207: DEBUG/main] Loaded sniffer for datatype 'galaxy.datatypes.binary:H5' +[2024-02-23 14:31:36,207: DEBUG/main] Loaded sniffer for datatype 'galaxy.datatypes.binary:Grib' +[2024-02-23 14:31:36,207: DEBUG/main] Loaded sniffer for datatype 'galaxy.datatypes.binary:HexrdImagesNpz' +[2024-02-23 14:31:36,207: DEBUG/main] Loaded sniffer for datatype 'galaxy.datatypes.binary:HexrdEtaOmeNpz' +[2024-02-23 14:31:36,208: DEBUG/main] Loaded sniffer for datatype 'galaxy.datatypes.binary:Npz' +[2024-02-23 14:31:36,208: DEBUG/main] Loaded sniffer for datatype 'galaxy.datatypes.binary:Bam' +[2024-02-23 14:31:36,208: DEBUG/main] Loaded sniffer for datatype 'galaxy.datatypes.binary:BamQuerynameSorted' +[2024-02-23 14:31:36,208: DEBUG/main] Loaded sniffer for datatype 'galaxy.datatypes.binary:BamNative' +[2024-02-23 14:31:36,208: DEBUG/main] Loaded sniffer for datatype 'galaxy.datatypes.binary:CRAM' +[2024-02-23 14:31:36,208: DEBUG/main] Loaded sniffer for datatype 'galaxy.datatypes.binary:Sff' +[2024-02-23 14:31:36,208: DEBUG/main] Loaded sniffer for datatype 'galaxy.datatypes.binary:Sra' +[2024-02-23 14:31:36,208: DEBUG/main] Loaded sniffer for datatype 'galaxy.datatypes.binary:NetCDF' +[2024-02-23 14:31:36,208: DEBUG/main] Loaded sniffer for datatype 'galaxy.datatypes.binary:DAA' +[2024-02-23 14:31:36,208: DEBUG/main] Loaded sniffer for datatype 'galaxy.datatypes.binary:RMA6' +[2024-02-23 14:31:36,208: DEBUG/main] Loaded sniffer for datatype 'galaxy.datatypes.binary:DMND' +[2024-02-23 14:31:36,208: DEBUG/main] Loaded sniffer for datatype 'galaxy.datatypes.binary:Parquet' +[2024-02-23 14:31:36,208: DEBUG/main] Loaded sniffer for datatype 'galaxy.datatypes.binary:BafTar' +[2024-02-23 14:31:36,208: DEBUG/main] Loaded sniffer for datatype 'galaxy.datatypes.binary:TdfTar' +[2024-02-23 14:31:36,208: DEBUG/main] Loaded sniffer for datatype 'galaxy.datatypes.binary:MassHunterTar' +[2024-02-23 14:31:36,208: DEBUG/main] Loaded sniffer for datatype 'galaxy.datatypes.binary:MassLynxTar' +[2024-02-23 14:31:36,208: DEBUG/main] Loaded sniffer for datatype 'galaxy.datatypes.binary:YepTar' +[2024-02-23 14:31:36,208: DEBUG/main] Loaded sniffer for datatype 'galaxy.datatypes.binary:WiffTar' +[2024-02-23 14:31:36,208: DEBUG/main] Loaded sniffer for datatype 'galaxy.datatypes.binary:Fast5ArchiveGz' +[2024-02-23 14:31:36,208: DEBUG/main] Loaded sniffer for datatype 'galaxy.datatypes.binary:Fast5ArchiveBz2' +[2024-02-23 14:31:36,208: DEBUG/main] Loaded sniffer for datatype 'galaxy.datatypes.binary:Fast5Archive' +[2024-02-23 14:31:36,209: DEBUG/main] Loaded sniffer for datatype 'galaxy.datatypes.binary:Meryldb' +[2024-02-23 14:31:36,209: DEBUG/main] Loaded sniffer for datatype 'galaxy.datatypes.binary:Bref3' +[2024-02-23 14:31:36,209: DEBUG/main] Loaded sniffer for datatype 'galaxy.datatypes.binary:PostgresqlArchive' +[2024-02-23 14:31:36,209: DEBUG/main] Loaded sniffer for datatype 'galaxy.datatypes.binary:ICM' +[2024-02-23 14:31:36,209: DEBUG/main] Loaded sniffer for datatype 'galaxy.datatypes.binary:Idat' +[2024-02-23 14:31:36,209: DEBUG/main] Loaded sniffer for datatype 'galaxy.datatypes.binary:Trr' +[2024-02-23 14:31:36,209: DEBUG/main] Loaded sniffer for datatype 'galaxy.datatypes.binary:Dcd' +[2024-02-23 14:31:36,209: DEBUG/main] Loaded sniffer for datatype 'galaxy.datatypes.binary:Xtc' +[2024-02-23 14:31:36,209: DEBUG/main] Loaded sniffer for datatype 'galaxy.datatypes.binary:Cpt' +[2024-02-23 14:31:36,209: DEBUG/main] Loaded sniffer for datatype 'galaxy.datatypes.binary:Edr' +[2024-02-23 14:31:36,209: DEBUG/main] Loaded sniffer for datatype 'galaxy.datatypes.binary:Vel' +[2024-02-23 14:31:36,209: DEBUG/main] Loaded sniffer for datatype 'galaxy.datatypes.binary:Xlsx' +[2024-02-23 14:31:36,209: DEBUG/main] Loaded sniffer for datatype 'galaxy.datatypes.qiime2:QIIME2Metadata' +[2024-02-23 14:31:36,209: DEBUG/main] Loaded sniffer for datatype 'galaxy.datatypes.qiime2:QIIME2Artifact' +[2024-02-23 14:31:36,209: DEBUG/main] Loaded sniffer for datatype 'galaxy.datatypes.qiime2:QIIME2Visualization' +[2024-02-23 14:31:36,209: DEBUG/main] Loaded sniffer for datatype 'galaxy.datatypes.binary:CompressedZipArchive' +[2024-02-23 14:31:36,209: DEBUG/main] Loaded sniffer for datatype 'galaxy.datatypes.binary:Pretext' +[2024-02-23 14:31:36,210: DEBUG/main] Loaded sniffer for datatype 'galaxy.datatypes.annotation:Augustus' +[2024-02-23 14:31:36,210: DEBUG/main] Loaded sniffer for datatype 'galaxy.datatypes.xml:Owl' +[2024-02-23 14:31:36,210: DEBUG/main] Loaded sniffer for datatype 'galaxy.datatypes.chain:Chain' +[2024-02-23 14:31:36,210: DEBUG/main] Loaded sniffer for datatype 'galaxy.datatypes.triples:Rdf' +[2024-02-23 14:31:36,210: DEBUG/main] Loaded sniffer for datatype 'galaxy.datatypes.blast:BlastXml' +[2024-02-23 14:31:36,210: DEBUG/main] Loaded sniffer for datatype 'galaxy.datatypes.images:Gifti' +[2024-02-23 14:31:36,210: DEBUG/main] Loaded sniffer for datatype 'galaxy.datatypes.xml:Phyloxml' +[2024-02-23 14:31:36,210: DEBUG/main] Loaded sniffer for datatype 'galaxy.datatypes.xml:Dzi' +[2024-02-23 14:31:36,210: DEBUG/main] Loaded sniffer for datatype 'galaxy.datatypes.xml:Sbml' +[2024-02-23 14:31:36,210: DEBUG/main] Loaded sniffer for datatype 'galaxy.datatypes.proteomics:Dta2d' +[2024-02-23 14:31:36,210: DEBUG/main] Loaded sniffer for datatype 'galaxy.datatypes.proteomics:Edta' +[2024-02-23 14:31:36,210: DEBUG/main] Loaded sniffer for datatype 'galaxy.datatypes.proteomics:ConsensusXML' +[2024-02-23 14:31:36,210: DEBUG/main] Loaded sniffer for datatype 'galaxy.datatypes.proteomics:IdXML' +[2024-02-23 14:31:36,210: DEBUG/main] Loaded sniffer for datatype 'galaxy.datatypes.proteomics:FeatureXML' +[2024-02-23 14:31:36,210: DEBUG/main] Loaded sniffer for datatype 'galaxy.datatypes.proteomics:MascotXML' +[2024-02-23 14:31:36,210: DEBUG/main] Loaded sniffer for datatype 'galaxy.datatypes.proteomics:Mgf' +[2024-02-23 14:31:36,210: DEBUG/main] Loaded sniffer for datatype 'galaxy.datatypes.proteomics:Ms2' +[2024-02-23 14:31:36,210: DEBUG/main] Loaded sniffer for datatype 'galaxy.datatypes.proteomics:Msp' +[2024-02-23 14:31:36,211: DEBUG/main] Loaded sniffer for datatype 'galaxy.datatypes.proteomics:MzData' +[2024-02-23 14:31:36,211: DEBUG/main] Loaded sniffer for datatype 'galaxy.datatypes.proteomics:MzIdentML' +[2024-02-23 14:31:36,211: DEBUG/main] Loaded sniffer for datatype 'galaxy.datatypes.proteomics:MzML' +[2024-02-23 14:31:36,211: DEBUG/main] Loaded sniffer for datatype 'galaxy.datatypes.proteomics:MzQuantML' +[2024-02-23 14:31:36,211: DEBUG/main] Loaded sniffer for datatype 'galaxy.datatypes.proteomics:MzTab' +[2024-02-23 14:31:36,211: DEBUG/main] Loaded sniffer for datatype 'galaxy.datatypes.proteomics:MzTab2' +[2024-02-23 14:31:36,211: DEBUG/main] Loaded sniffer for datatype 'galaxy.datatypes.proteomics:ParamXml' +[2024-02-23 14:31:36,211: DEBUG/main] Loaded sniffer for datatype 'galaxy.datatypes.proteomics:MzXML' +[2024-02-23 14:31:36,211: DEBUG/main] Loaded sniffer for datatype 'galaxy.datatypes.proteomics:NmrML' +[2024-02-23 14:31:36,211: DEBUG/main] Loaded sniffer for datatype 'galaxy.datatypes.proteomics:Kroenik' +[2024-02-23 14:31:36,211: DEBUG/main] Loaded sniffer for datatype 'galaxy.datatypes.proteomics:PepList' +[2024-02-23 14:31:36,211: DEBUG/main] Loaded sniffer for datatype 'galaxy.datatypes.proteomics:PSMS' +[2024-02-23 14:31:36,211: DEBUG/main] Loaded sniffer for datatype 'galaxy.datatypes.proteomics:PepXml' +[2024-02-23 14:31:36,211: DEBUG/main] Loaded sniffer for datatype 'galaxy.datatypes.proteomics:ProtXML' +[2024-02-23 14:31:36,211: DEBUG/main] Loaded sniffer for datatype 'galaxy.datatypes.proteomics:SPLib' +[2024-02-23 14:31:36,211: DEBUG/main] Loaded sniffer for datatype 'galaxy.datatypes.proteomics:TandemXML' +[2024-02-23 14:31:36,211: DEBUG/main] Loaded sniffer for datatype 'galaxy.datatypes.proteomics:ThermoRAW' +[2024-02-23 14:31:36,212: DEBUG/main] Loaded sniffer for datatype 'galaxy.datatypes.proteomics:TraML' +[2024-02-23 14:31:36,212: DEBUG/main] Loaded sniffer for datatype 'galaxy.datatypes.proteomics:TrafoXML' +[2024-02-23 14:31:36,212: DEBUG/main] Loaded sniffer for datatype 'galaxy.datatypes.proteomics:UniProtXML' +[2024-02-23 14:31:36,212: DEBUG/main] Loaded sniffer for datatype 'galaxy.datatypes.proteomics:XquestXML' +[2024-02-23 14:31:36,212: DEBUG/main] Loaded sniffer for datatype 'galaxy.datatypes.proteomics:XquestSpecXML' +[2024-02-23 14:31:36,212: DEBUG/main] Loaded sniffer for datatype 'galaxy.datatypes.proteomics:QCML' +[2024-02-23 14:31:36,212: DEBUG/main] Loaded sniffer for datatype 'galaxy.datatypes.proteomics:Wiff' +[2024-02-23 14:31:36,212: DEBUG/main] Loaded sniffer for datatype 'galaxy.datatypes.proteomics:PEFF' +[2024-02-23 14:31:36,212: DEBUG/main] Loaded sniffer for datatype 'galaxy.datatypes.molecules:CML' +[2024-02-23 14:31:36,212: DEBUG/main] Loaded sniffer for datatype 'galaxy.datatypes.xml:GenericXml' +[2024-02-23 14:31:36,212: DEBUG/main] Loaded sniffer for datatype 'galaxy.datatypes.triples:HDT' +[2024-02-23 14:31:36,212: DEBUG/main] Loaded sniffer for datatype 'galaxy.datatypes.triples:Turtle' +[2024-02-23 14:31:36,212: DEBUG/main] Loaded sniffer for datatype 'galaxy.datatypes.triples:NTriples' +[2024-02-23 14:31:36,212: DEBUG/main] Loaded sniffer for datatype 'galaxy.datatypes.triples:Jsonld' +[2024-02-23 14:31:36,212: DEBUG/main] Loaded sniffer for datatype 'galaxy.datatypes.sequence:Maf' +[2024-02-23 14:31:36,212: DEBUG/main] Loaded sniffer for datatype 'galaxy.datatypes.sequence:Lav' +[2024-02-23 14:31:36,212: DEBUG/main] Loaded sniffer for datatype 'galaxy.datatypes.sequence:MemePsp' +[2024-02-23 14:31:36,212: DEBUG/main] Loaded sniffer for datatype 'galaxy.datatypes.sequence:Fastg' +[2024-02-23 14:31:36,213: DEBUG/main] Loaded sniffer for datatype 'galaxy.datatypes.sequence:csFasta' +[2024-02-23 14:31:36,213: DEBUG/main] Loaded sniffer for datatype 'galaxy.datatypes.qualityscore:QualityScoreSOLiD' +[2024-02-23 14:31:36,213: DEBUG/main] Loaded sniffer for datatype 'galaxy.datatypes.qualityscore:QualityScore454' +[2024-02-23 14:31:36,213: DEBUG/main] Loaded sniffer for datatype 'galaxy.datatypes.molecules:SDF' +[2024-02-23 14:31:36,213: DEBUG/main] Loaded sniffer for datatype 'galaxy.datatypes.molecules:PDB' +[2024-02-23 14:31:36,213: DEBUG/main] Loaded sniffer for datatype 'galaxy.datatypes.molecules:Cell' +[2024-02-23 14:31:36,213: DEBUG/main] Loaded sniffer for datatype 'galaxy.datatypes.molecules:CIF' +[2024-02-23 14:31:36,213: DEBUG/main] Loaded sniffer for datatype 'galaxy.datatypes.molecules:ExtendedXYZ' +[2024-02-23 14:31:36,213: DEBUG/main] Loaded sniffer for datatype 'galaxy.datatypes.molecules:XYZ' +[2024-02-23 14:31:36,213: DEBUG/main] Loaded sniffer for datatype 'galaxy.datatypes.molecules:MOL2' +[2024-02-23 14:31:36,213: DEBUG/main] Loaded sniffer for datatype 'galaxy.datatypes.molecules:InChI' +[2024-02-23 14:31:36,213: DEBUG/main] Loaded sniffer for datatype 'galaxy.datatypes.molecules:FPS' +[2024-02-23 14:31:36,213: DEBUG/main] Loaded sniffer for datatype 'galaxy.datatypes.molecules:PQR' +[2024-02-23 14:31:36,213: DEBUG/main] Loaded sniffer for datatype 'galaxy.datatypes.molecules:GRO' +[2024-02-23 14:31:36,213: DEBUG/main] Loaded sniffer for datatype 'galaxy.datatypes.phylip:Phylip' +[2024-02-23 14:31:36,213: DEBUG/main] Loaded sniffer for datatype 'galaxy.datatypes.sequence:Fasta' +[2024-02-23 14:31:36,214: DEBUG/main] Loaded sniffer for datatype 'galaxy.datatypes.sequence:FastqCSSanger' +[2024-02-23 14:31:36,214: DEBUG/main] Loaded sniffer for datatype 'galaxy.datatypes.sequence:FastqSanger' +[2024-02-23 14:31:36,214: DEBUG/main] Loaded sniffer for datatype 'galaxy.datatypes.sequence:Fastq' +[2024-02-23 14:31:36,214: DEBUG/main] Loaded sniffer for datatype 'galaxy.datatypes.interval:Wiggle' +[2024-02-23 14:31:36,214: DEBUG/main] Loaded sniffer for datatype 'galaxy.datatypes.text:Html' +[2024-02-23 14:31:36,214: DEBUG/main] Loaded sniffer for datatype 'galaxy.datatypes.images:Pdf' +[2024-02-23 14:31:36,214: DEBUG/main] Loaded sniffer for datatype 'galaxy.datatypes.sequence:Axt' +[2024-02-23 14:31:36,214: DEBUG/main] Loaded sniffer for datatype 'galaxy.datatypes.sequence:Genbank' +[2024-02-23 14:31:36,214: DEBUG/main] Loaded sniffer for datatype 'galaxy.datatypes.interval:Bed' +[2024-02-23 14:31:36,214: DEBUG/main] Loaded sniffer for datatype 'galaxy.datatypes.interval:CustomTrack' +[2024-02-23 14:31:36,214: DEBUG/main] Loaded sniffer for datatype 'galaxy.datatypes.interval:Gtf' +[2024-02-23 14:31:36,214: DEBUG/main] Loaded sniffer for datatype 'galaxy.datatypes.interval:Gff' +[2024-02-23 14:31:36,214: DEBUG/main] Loaded sniffer for datatype 'galaxy.datatypes.interval:Gff3' +[2024-02-23 14:31:36,214: DEBUG/main] Loaded sniffer for datatype 'galaxy.datatypes.tabular:Pileup' +[2024-02-23 14:31:36,215: DEBUG/main] Loaded sniffer for datatype 'galaxy.datatypes.tabular:Psl' +[2024-02-23 14:31:36,215: DEBUG/main] Loaded sniffer for datatype 'galaxy.datatypes.text:Paf' +[2024-02-23 14:31:36,215: DEBUG/main] Loaded sniffer for datatype 'galaxy.datatypes.interval:Interval' +[2024-02-23 14:31:36,215: DEBUG/main] Loaded sniffer for datatype 'galaxy.datatypes.tabular:Sam' +[2024-02-23 14:31:36,215: DEBUG/main] Loaded sniffer for datatype 'galaxy.datatypes.data:Newick' +[2024-02-23 14:31:36,215: DEBUG/main] Loaded sniffer for datatype 'galaxy.datatypes.data:Nexus' +[2024-02-23 14:31:36,215: DEBUG/main] Loaded sniffer for datatype 'galaxy.datatypes.text:IQTree' +[2024-02-23 14:31:36,215: DEBUG/main] Loaded sniffer for datatype 'galaxy.datatypes.text:Obo' +[2024-02-23 14:31:36,215: DEBUG/main] Loaded sniffer for datatype 'galaxy.datatypes.text:Arff' +[2024-02-23 14:31:36,215: DEBUG/main] Loaded sniffer for datatype 'galaxy.datatypes.text:Ipynb' +[2024-02-23 14:31:36,215: DEBUG/main] Loaded sniffer for datatype 'galaxy.datatypes.text:Biom1' +[2024-02-23 14:31:36,215: DEBUG/main] Loaded sniffer for datatype 'galaxy.datatypes.text:ImgtJson' +[2024-02-23 14:31:36,215: DEBUG/main] Loaded sniffer for datatype 'galaxy.datatypes.text:GeoJson' +[2024-02-23 14:31:36,215: DEBUG/main] Loaded sniffer for datatype 'galaxy.datatypes.text:PithyaResult' +[2024-02-23 14:31:36,216: DEBUG/main] Loaded sniffer for datatype 'galaxy.datatypes.text:BCSLts' +[2024-02-23 14:31:36,216: DEBUG/main] Loaded sniffer for datatype 'galaxy.datatypes.text:Json' +[2024-02-23 14:31:36,216: DEBUG/main] Loaded sniffer for datatype 'galaxy.datatypes.genetics:GenotypeMatrix' +[2024-02-23 14:31:36,216: DEBUG/main] Loaded sniffer for datatype 'galaxy.datatypes.genetics:DataIn' +[2024-02-23 14:31:36,216: DEBUG/main] Loaded sniffer for datatype 'galaxy.datatypes.genetics:MarkerMap' +[2024-02-23 14:31:36,216: DEBUG/main] Loaded sniffer for datatype 'galaxy.datatypes.genetics:AllegroLOD' +[2024-02-23 14:31:36,216: DEBUG/main] Loaded sniffer for datatype 'galaxy.datatypes.sequence:RNADotPlotMatrix' +[2024-02-23 14:31:36,216: DEBUG/main] Loaded sniffer for datatype 'galaxy.datatypes.sequence:DotBracket' +[2024-02-23 14:31:36,216: DEBUG/main] Loaded sniffer for datatype 'galaxy.datatypes.tabular:CMAP' +[2024-02-23 14:31:36,216: DEBUG/main] Loaded sniffer for datatype 'galaxy.datatypes.tabular:ConnectivityTable' +[2024-02-23 14:31:36,216: DEBUG/main] Loaded sniffer for datatype 'galaxy.datatypes.tabular:CSV' +[2024-02-23 14:31:36,216: DEBUG/main] Loaded sniffer for datatype 'galaxy.datatypes.metacyto:mSummary' +[2024-02-23 14:31:36,216: DEBUG/main] Loaded sniffer for datatype 'galaxy.datatypes.metacyto:mStats' +[2024-02-23 14:31:36,216: DEBUG/main] Loaded sniffer for datatype 'galaxy.datatypes.tabular:TSV' +[2024-02-23 14:31:36,216: DEBUG/main] Loaded sniffer for datatype 'galaxy.datatypes.tabular:MatrixMarket' +[2024-02-23 14:31:36,217: DEBUG/main] Loaded sniffer for datatype 'galaxy.datatypes.msa:Hmmer2' +[2024-02-23 14:31:36,217: DEBUG/main] Loaded sniffer for datatype 'galaxy.datatypes.msa:Hmmer3' +[2024-02-23 14:31:36,217: DEBUG/main] Loaded sniffer for datatype 'galaxy.datatypes.msa:Stockholm_1_0' +[2024-02-23 14:31:36,217: DEBUG/main] Loaded sniffer for datatype 'galaxy.datatypes.msa:MauveXmfa' +[2024-02-23 14:31:36,217: DEBUG/main] Loaded sniffer for datatype 'galaxy.datatypes.msa:InfernalCM' +[2024-02-23 14:31:36,217: DEBUG/main] Loaded sniffer for datatype 'galaxy.datatypes.annotation:SnapHmm' +[2024-02-23 14:31:36,217: DEBUG/main] Loaded sniffer for datatype 'galaxy.datatypes.microarrays:Cel' +[2024-02-23 14:31:36,217: DEBUG/main] Loaded sniffer for datatype 'galaxy.datatypes.microarrays:Gpr' +[2024-02-23 14:31:36,217: DEBUG/main] Loaded sniffer for datatype 'galaxy.datatypes.microarrays:Gal' +[2024-02-23 14:31:36,217: DEBUG/main] Loaded sniffer for datatype 'galaxy.datatypes.binary:RData' +[2024-02-23 14:31:36,217: DEBUG/main] Loaded sniffer for datatype 'galaxy.datatypes.binary:RDS' +[2024-02-23 14:31:36,217: DEBUG/main] Loaded sniffer for datatype 'galaxy.datatypes.images:Mrc2014' +[2024-02-23 14:31:36,217: DEBUG/main] Loaded sniffer for datatype 'galaxy.datatypes.images:Jpg' +[2024-02-23 14:31:36,217: DEBUG/main] Loaded sniffer for datatype 'galaxy.datatypes.images:Png' +[2024-02-23 14:31:36,218: DEBUG/main] Loaded sniffer for datatype 'galaxy.datatypes.images:OMETiff' +[2024-02-23 14:31:36,218: DEBUG/main] Loaded sniffer for datatype 'galaxy.datatypes.images:Tiff' +[2024-02-23 14:31:36,218: DEBUG/main] Loaded sniffer for datatype 'galaxy.datatypes.images:Bmp' +[2024-02-23 14:31:36,218: DEBUG/main] Loaded sniffer for datatype 'galaxy.datatypes.images:Gif' +[2024-02-23 14:31:36,218: DEBUG/main] Loaded sniffer for datatype 'galaxy.datatypes.images:Im' +[2024-02-23 14:31:36,218: DEBUG/main] Loaded sniffer for datatype 'galaxy.datatypes.images:Pcd' +[2024-02-23 14:31:36,218: DEBUG/main] Loaded sniffer for datatype 'galaxy.datatypes.images:Pcx' +[2024-02-23 14:31:36,218: DEBUG/main] Loaded sniffer for datatype 'galaxy.datatypes.images:Ppm' +[2024-02-23 14:31:36,218: DEBUG/main] Loaded sniffer for datatype 'galaxy.datatypes.images:Psd' +[2024-02-23 14:31:36,218: DEBUG/main] Loaded sniffer for datatype 'galaxy.datatypes.images:Xbm' +[2024-02-23 14:31:36,218: DEBUG/main] Loaded sniffer for datatype 'galaxy.datatypes.images:Rgb' +[2024-02-23 14:31:36,218: DEBUG/main] Loaded sniffer for datatype 'galaxy.datatypes.images:Pbm' +[2024-02-23 14:31:36,218: DEBUG/main] Loaded sniffer for datatype 'galaxy.datatypes.images:Pgm' +[2024-02-23 14:31:36,218: DEBUG/main] Loaded sniffer for datatype 'galaxy.datatypes.images:Xpm' +[2024-02-23 14:31:36,219: DEBUG/main] Loaded sniffer for datatype 'galaxy.datatypes.images:Eps' +[2024-02-23 14:31:36,219: DEBUG/main] Loaded sniffer for datatype 'galaxy.datatypes.images:Rast' +[2024-02-23 14:31:36,219: DEBUG/main] Loaded sniffer for datatype 'galaxy.datatypes.images:Tck' +[2024-02-23 14:31:36,219: DEBUG/main] Loaded sniffer for datatype 'galaxy.datatypes.images:Trk' +[2024-02-23 14:31:36,219: DEBUG/main] Loaded sniffer for datatype 'galaxy.datatypes.images:Nifti1' +[2024-02-23 14:31:36,219: DEBUG/main] Loaded sniffer for datatype 'galaxy.datatypes.images:Nifti2' +[2024-02-23 14:31:36,219: DEBUG/main] Loaded sniffer for datatype 'galaxy.datatypes.images:Star' +[2024-02-23 14:31:36,219: DEBUG/main] Loaded sniffer for datatype 'galaxy.datatypes.media:Wav' +[2024-02-23 14:31:36,219: DEBUG/main] Loaded sniffer for datatype 'galaxy.datatypes.media:Mkv' +[2024-02-23 14:31:36,219: DEBUG/main] Loaded sniffer for datatype 'galaxy.datatypes.media:Mp3' +[2024-02-23 14:31:36,219: DEBUG/main] Loaded sniffer for datatype 'galaxy.datatypes.media:Mp4' +[2024-02-23 14:31:36,219: DEBUG/main] Loaded sniffer for datatype 'galaxy.datatypes.media:Flv' +[2024-02-23 14:31:36,219: DEBUG/main] Loaded sniffer for datatype 'galaxy.datatypes.media:Mpg' +[2024-02-23 14:31:36,219: DEBUG/main] Loaded sniffer for datatype 'galaxy.datatypes.speech:TextGrid' +[2024-02-23 14:31:36,220: DEBUG/main] Loaded sniffer for datatype 'galaxy.datatypes.speech:BPF' +[2024-02-23 14:31:36,220: DEBUG/main] Loaded sniffer for datatype 'galaxy.datatypes.larch:FEFFInput' +[2024-02-23 14:31:36,220: DEBUG/main] Loaded sniffer for datatype 'galaxy.datatypes.larch:AthenaProject' +[2024-02-23 14:31:36,220: DEBUG/main] Loaded sniffer for datatype 'galaxy.datatypes.text:Castep' +[2024-02-23 14:31:36,220: DEBUG/main] Loaded sniffer for datatype 'galaxy.datatypes.text:CTLresult' +[2024-02-23 14:31:36,220: DEBUG/main] Loaded sniffer for datatype 'galaxy.datatypes.text:FormattedDensity' +[2024-02-23 14:31:36,220: DEBUG/main] Loaded sniffer for datatype 'galaxy.datatypes.text:Param' +[2024-02-23 14:31:36,220: DEBUG/main] Loaded sniffer for datatype 'galaxy.datatypes.text:Yaml' +[2024-02-23 14:31:36,220: DEBUG/main] Loaded sniffer for datatype 'galaxy.datatypes.binary:OxliCountGraph' +[2024-02-23 14:31:36,220: DEBUG/main] Loaded sniffer for datatype 'galaxy.datatypes.binary:OxliNodeGraph' +[2024-02-23 14:31:36,220: DEBUG/main] Loaded sniffer for datatype 'galaxy.datatypes.binary:OxliTagSet' +[2024-02-23 14:31:36,220: DEBUG/main] Loaded sniffer for datatype 'galaxy.datatypes.binary:OxliStopTags' +[2024-02-23 14:31:36,220: DEBUG/main] Loaded sniffer for datatype 'galaxy.datatypes.binary:OxliSubset' +[2024-02-23 14:31:36,220: DEBUG/main] Loaded sniffer for datatype 'galaxy.datatypes.binary:OxliGraphLabels' +[2024-02-23 14:31:36,221: DEBUG/main] Loaded sniffer for datatype 'galaxy.datatypes.binary:FITS' +[2024-02-23 14:31:36,221: DEBUG/main] Loaded sniffer for datatype 'galaxy.datatypes.neo4j:Neo4jDBzip' +[2024-02-23 14:31:36,221: DEBUG/main] Loaded sniffer for datatype 'galaxy.datatypes.text:PithyaProperty' +[2024-02-23 14:31:36,221: DEBUG/main] Loaded sniffer for datatype 'galaxy.datatypes.text:PithyaModel' +[2024-02-23 14:31:36,221: DEBUG/main] Loaded sniffer for datatype 'galaxy.datatypes.text:BCSLmodel' +[2024-02-23 14:31:36,221: DEBUG/main] Loaded sniffer for datatype 'galaxy.datatypes.text:StormSample' +[2024-02-23 14:31:36,221: DEBUG/main] Loaded sniffer for datatype 'galaxy.datatypes.text:StormCheck' +[2024-02-23 14:31:36,228: DEBUG/main] Build site file [tool-data/shared/ucsc/ucsc_build_sites.txt] not found using sample [tool-data/shared/ucsc/ucsc_build_sites.txt.sample]. +[2024-02-23 14:31:36,228: DEBUG/main] Loaded build site 'ucsc': tool-data/shared/ucsc/ucsc_build_sites.txt.sample with display sites: ['main', 'test', 'archaea', 'ucla'] +[2024-02-23 14:31:36,230: DEBUG/main] Loaded build site 'gbrowse': tool-data/shared/gbrowse/gbrowse_build_sites.txt with display sites: ['modencode', 'sgd_yeast', 'tair', 'wormbase', 'wormbase_ws120', 'wormbase_ws140', 'wormbase_ws170', 'wormbase_ws180', 'wormbase_ws190', 'wormbase_ws200', 'wormbase_ws204', 'wormbase_ws210', 'wormbase_ws220', 'wormbase_ws225'] +[2024-02-23 14:31:36,230: DEBUG/main] Loaded build site 'ensembl': tool-data/shared/ensembl/ensembl_sites.txt +[2024-02-23 14:31:36,231: DEBUG/main] Loaded build site 'ensembl_data_url': tool-data/shared/ensembl/ensembl_sites_data_URL.txt +[2024-02-23 14:31:36,231: DEBUG/main] Build site file [tool-data/shared/igv/igv_build_sites.txt] not found using sample [tool-data/shared/igv/igv_build_sites.txt.sample]. +[2024-02-23 14:31:36,231: DEBUG/main] Loaded build site 'igv': tool-data/shared/igv/igv_build_sites.txt.sample +[2024-02-23 14:31:36,231: DEBUG/main] Build site file [tool-data/shared/rviewer/rviewer_build_sites.txt] not found using sample [tool-data/shared/rviewer/rviewer_build_sites.txt.sample]. +[2024-02-23 14:31:36,231: DEBUG/main] Loaded build site 'rviewer': tool-data/shared/rviewer/rviewer_build_sites.txt.sample +[2024-02-23 14:31:36,235: DEBUG/main] Loading references to tool sheds from /tmp/tmpqrlh6ih1/tool_sheds_conf.xml +[2024-02-23 14:31:36,235: DEBUG/main] Loaded reference to tool shed: Target Shed +[2024-02-23 14:31:36,236: INFO/main] Successfully executed Celery task clean_object_store_caches to prune object store cache directories clean_object_store_caches to prune object store cache directories (0.416 ms) +[2024-02-23 14:31:36,258: INFO/main] Task galaxy.clean_object_store_caches[0cd32a96-9d0e-4f4d-9772-212740dc8b8c] succeeded in 1.1198743890272453s: None + +==> /tmp/tmpqrlh6ih1/gravity/log/gunicorn.log <== +uvicorn.access INFO 2024-02-23 14:31:39,245 [pN:main.1,p:78709,tN:MainThread] 127.0.0.1:59058 - "GET /history/current_history_json?since=2024-02-23T19:31:05.000216 HTTP/1.1" 200 +uvicorn.access INFO 2024-02-23 14:31:39,246 [pN:main.1,p:78709,tN:MainThread] 127.0.0.1:59042 - "GET /api/entry_points?running=true HTTP/1.1" 200 +uvicorn.access INFO 2024-02-23 14:31:41,884 [pN:main.1,p:78709,tN:MainThread] 127.0.0.1:59064 - "GET /history/current_history_json?since=2024-02-23T19:31:05.000216 HTTP/1.1" 200 +uvicorn.access INFO 2024-02-23 14:31:44,914 [pN:main.1,p:78709,tN:MainThread] 127.0.0.1:59080 - "GET /history/current_history_json?since=2024-02-23T19:31:05.000216 HTTP/1.1" 200 +uvicorn.access INFO 2024-02-23 14:31:47,947 [pN:main.1,p:78709,tN:MainThread] 127.0.0.1:58360 - "GET /history/current_history_json?since=2024-02-23T19:31:05.000216 HTTP/1.1" 200 +uvicorn.access INFO 2024-02-23 14:31:49,232 [pN:main.1,p:78709,tN:MainThread] 127.0.0.1:58360 - "GET /api/entry_points?running=true HTTP/1.1" 200 +uvicorn.access INFO 2024-02-23 14:31:50,978 [pN:main.1,p:78709,tN:MainThread] 127.0.0.1:58360 - "GET /history/current_history_json?since=2024-02-23T19:31:05.000216 HTTP/1.1" 200 +uvicorn.access INFO 2024-02-23 14:31:54,007 [pN:main.1,p:78709,tN:MainThread] 127.0.0.1:58364 - "GET /history/current_history_json?since=2024-02-23T19:31:05.000216 HTTP/1.1" 200 +uvicorn.access INFO 2024-02-23 14:31:57,035 [pN:main.1,p:78709,tN:MainThread] 127.0.0.1:33278 - "GET /history/current_history_json?since=2024-02-23T19:31:05.000216 HTTP/1.1" 200 +uvicorn.access INFO 2024-02-23 14:31:59,235 [pN:main.1,p:78709,tN:MainThread] 127.0.0.1:33288 - "GET /api/entry_points?running=true HTTP/1.1" 200 +uvicorn.access INFO 2024-02-23 14:32:00,061 [pN:main.1,p:78709,tN:MainThread] 127.0.0.1:33288 - "GET /history/current_history_json?since=2024-02-23T19:31:05.000216 HTTP/1.1" 200 +uvicorn.access INFO 2024-02-23 14:32:03,091 [pN:main.1,p:78709,tN:MainThread] 127.0.0.1:33290 - "GET /history/current_history_json?since=2024-02-23T19:31:05.000216 HTTP/1.1" 200 +uvicorn.access INFO 2024-02-23 14:32:06,121 [pN:main.1,p:78709,tN:MainThread] 127.0.0.1:51182 - "GET /history/current_history_json?since=2024-02-23T19:31:05.000216 HTTP/1.1" 200 +uvicorn.access INFO 2024-02-23 14:32:09,178 [pN:main.1,p:78709,tN:MainThread] 127.0.0.1:51190 - "GET /history/current_history_json?since=2024-02-23T19:31:05.000216 HTTP/1.1" 200 +uvicorn.access INFO 2024-02-23 14:32:09,235 [pN:main.1,p:78709,tN:MainThread] 127.0.0.1:51190 - "GET /api/entry_points?running=true HTTP/1.1" 200 +uvicorn.access INFO 2024-02-23 14:32:12,215 [pN:main.1,p:78709,tN:MainThread] 127.0.0.1:51200 - "GET /history/current_history_json?since=2024-02-23T19:31:05.000216 HTTP/1.1" 200 +uvicorn.access INFO 2024-02-23 14:32:15,244 [pN:main.1,p:78709,tN:MainThread] 127.0.0.1:51208 - "GET /history/current_history_json?since=2024-02-23T19:31:05.000216 HTTP/1.1" 200 +uvicorn.access INFO 2024-02-23 14:32:18,272 [pN:main.1,p:78709,tN:MainThread] 127.0.0.1:49292 - "GET /history/current_history_json?since=2024-02-23T19:31:05.000216 HTTP/1.1" 200 +uvicorn.access INFO 2024-02-23 14:32:19,237 [pN:main.1,p:78709,tN:MainThread] 127.0.0.1:49292 - "GET /api/entry_points?running=true HTTP/1.1" 200 +uvicorn.access INFO 2024-02-23 14:32:21,303 [pN:main.1,p:78709,tN:MainThread] 127.0.0.1:49304 - "GET /history/current_history_json?since=2024-02-23T19:31:05.000216 HTTP/1.1" 200 +uvicorn.access INFO 2024-02-23 14:32:24,334 [pN:main.1,p:78709,tN:MainThread] 127.0.0.1:49306 - "GET /history/current_history_json?since=2024-02-23T19:31:05.000216 HTTP/1.1" 200 +uvicorn.access INFO 2024-02-23 14:32:27,364 [pN:main.1,p:78709,tN:MainThread] 127.0.0.1:52516 - "GET /history/current_history_json?since=2024-02-23T19:31:05.000216 HTTP/1.1" 200 +uvicorn.access INFO 2024-02-23 14:32:29,237 [pN:main.1,p:78709,tN:MainThread] 127.0.0.1:52516 - "GET /api/entry_points?running=true HTTP/1.1" 200 +uvicorn.access INFO 2024-02-23 14:32:30,394 [pN:main.1,p:78709,tN:MainThread] 127.0.0.1:52516 - "GET /history/current_history_json?since=2024-02-23T19:31:05.000216 HTTP/1.1" 200 +uvicorn.access INFO 2024-02-23 14:32:34,227 [pN:main.1,p:78709,tN:MainThread] 127.0.0.1:52530 - "GET /history/current_history_json?since=2024-02-23T19:31:05.000216 HTTP/1.1" 200 +uvicorn.access INFO 2024-02-23 14:32:40,226 [pN:main.1,p:78709,tN:MainThread] 127.0.0.1:55960 - "GET /api/entry_points?running=true HTTP/1.1" 200 +uvicorn.access INFO 2024-02-23 14:32:50,229 [pN:main.1,p:78709,tN:MainThread] 127.0.0.1:47220 - "GET /api/entry_points?running=true HTTP/1.1" 200 +uvicorn.access INFO 2024-02-23 14:33:01,227 [pN:main.1,p:78709,tN:MainThread] 127.0.0.1:38834 - "GET /api/entry_points?running=true HTTP/1.1" 200 +uvicorn.access INFO 2024-02-23 14:33:11,237 [pN:main.1,p:78709,tN:MainThread] 127.0.0.1:54950 - "GET /api/entry_points?running=true HTTP/1.1" 200 +uvicorn.access INFO 2024-02-23 14:33:22,228 [pN:main.1,p:78709,tN:MainThread] 127.0.0.1:51772 - "GET /api/entry_points?running=true HTTP/1.1" 200 +uvicorn.access INFO 2024-02-23 14:33:35,225 [pN:main.1,p:78709,tN:MainThread] 127.0.0.1:39714 - "GET /history/current_history_json?since=2024-02-23T19:31:05.000216 HTTP/1.1" 200 +uvicorn.access INFO 2024-02-23 14:34:03,233 [pN:main.1,p:78709,tN:MainThread] 127.0.0.1:32804 - "GET /api/entry_points?running=true HTTP/1.1" 200 +uvicorn.access INFO 2024-02-23 14:34:36,223 [pN:main.1,p:78709,tN:MainThread] 127.0.0.1:43248 - "GET /history/current_history_json?since=2024-02-23T19:31:05.000216 HTTP/1.1" 200 +uvicorn.access INFO 2024-02-23 14:35:03,231 [pN:main.1,p:78709,tN:MainThread] 127.0.0.1:49414 - "GET /api/entry_points?running=true HTTP/1.1" 200 +uvicorn.access INFO 2024-02-23 14:35:37,224 [pN:main.1,p:78709,tN:MainThread] 127.0.0.1:54092 - "GET /history/current_history_json?since=2024-02-23T19:31:05.000216 HTTP/1.1" 200 +uvicorn.access INFO 2024-02-23 14:35:47,545 [pN:main.1,p:78709,tN:MainThread] 127.0.0.1:33818 - "GET /api/entry_points?running=true HTTP/1.1" 200 +uvicorn.access INFO 2024-02-23 14:35:47,547 [pN:main.1,p:78709,tN:MainThread] 127.0.0.1:33804 - "GET /history/current_history_json?since=2024-02-23T19:31:05.000216 HTTP/1.1" 200 +uvicorn.access INFO 2024-02-23 14:35:50,579 [pN:main.1,p:78709,tN:MainThread] 127.0.0.1:33828 - "GET /history/current_history_json?since=2024-02-23T19:31:05.000216 HTTP/1.1" 200 +uvicorn.access INFO 2024-02-23 14:35:53,609 [pN:main.1,p:78709,tN:MainThread] 127.0.0.1:33832 - "GET /history/current_history_json?since=2024-02-23T19:31:05.000216 HTTP/1.1" 200 +uvicorn.access INFO 2024-02-23 14:35:56,638 [pN:main.1,p:78709,tN:MainThread] 127.0.0.1:48808 - "GET /history/current_history_json?since=2024-02-23T19:31:05.000216 HTTP/1.1" 200 +uvicorn.access INFO 2024-02-23 14:35:57,528 [pN:main.1,p:78709,tN:MainThread] 127.0.0.1:48808 - "GET /api/entry_points?running=true HTTP/1.1" 200 +uvicorn.access INFO 2024-02-23 14:35:59,667 [pN:main.1,p:78709,tN:MainThread] 127.0.0.1:48810 - "GET /history/current_history_json?since=2024-02-23T19:31:05.000216 HTTP/1.1" 200 +uvicorn.access INFO 2024-02-23 14:36:02,692 [pN:main.1,p:78709,tN:MainThread] 127.0.0.1:48822 - "GET /history/current_history_json?since=2024-02-23T19:31:05.000216 HTTP/1.1" 200 +uvicorn.access INFO 2024-02-23 14:36:05,722 [pN:main.1,p:78709,tN:MainThread] 127.0.0.1:40204 - "GET /history/current_history_json?since=2024-02-23T19:31:05.000216 HTTP/1.1" 200 +uvicorn.access INFO 2024-02-23 14:36:07,532 [pN:main.1,p:78709,tN:MainThread] 127.0.0.1:40204 - "GET /api/entry_points?running=true HTTP/1.1" 200 +uvicorn.access INFO 2024-02-23 14:36:08,754 [pN:main.1,p:78709,tN:MainThread] 127.0.0.1:40204 - "GET /history/current_history_json?since=2024-02-23T19:31:05.000216 HTTP/1.1" 200 +uvicorn.access INFO 2024-02-23 14:36:11,784 [pN:main.1,p:78709,tN:MainThread] 127.0.0.1:40210 - "GET /history/current_history_json?since=2024-02-23T19:31:05.000216 HTTP/1.1" 200 +uvicorn.access INFO 2024-02-23 14:36:14,812 [pN:main.1,p:78709,tN:MainThread] 127.0.0.1:40220 - "GET /history/current_history_json?since=2024-02-23T19:31:05.000216 HTTP/1.1" 200 +uvicorn.access INFO 2024-02-23 14:36:17,532 [pN:main.1,p:78709,tN:MainThread] 127.0.0.1:46790 - "GET /api/entry_points?running=true HTTP/1.1" 200 +uvicorn.access INFO 2024-02-23 14:36:17,840 [pN:main.1,p:78709,tN:MainThread] 127.0.0.1:46790 - "GET /history/current_history_json?since=2024-02-23T19:31:05.000216 HTTP/1.1" 200 +uvicorn.access INFO 2024-02-23 14:36:20,868 [pN:main.1,p:78709,tN:MainThread] 127.0.0.1:46792 - "GET /history/current_history_json?since=2024-02-23T19:31:05.000216 HTTP/1.1" 200 +uvicorn.access INFO 2024-02-23 14:36:23,898 [pN:main.1,p:78709,tN:MainThread] 127.0.0.1:46796 - "GET /history/current_history_json?since=2024-02-23T19:31:05.000216 HTTP/1.1" 200 +uvicorn.access INFO 2024-02-23 14:36:26,927 [pN:main.1,p:78709,tN:MainThread] 127.0.0.1:44190 - "GET /history/current_history_json?since=2024-02-23T19:31:05.000216 HTTP/1.1" 200 +uvicorn.access INFO 2024-02-23 14:36:27,535 [pN:main.1,p:78709,tN:MainThread] 127.0.0.1:44190 - "GET /api/entry_points?running=true HTTP/1.1" 200 +uvicorn.access INFO 2024-02-23 14:36:29,958 [pN:main.1,p:78709,tN:MainThread] 127.0.0.1:44196 - "GET /history/current_history_json?since=2024-02-23T19:31:05.000216 HTTP/1.1" 200 +uvicorn.access INFO 2024-02-23 14:36:32,986 [pN:main.1,p:78709,tN:MainThread] 127.0.0.1:44202 - "GET /history/current_history_json?since=2024-02-23T19:31:05.000216 HTTP/1.1" 200 + +==> /tmp/tmpqrlh6ih1/gravity/log/celery-beat.log <== +[2024-02-23 14:36:34,242: DEBUG/MainProcess] beat: Synchronizing schedule... +[2024-02-23 14:36:34,243: DEBUG/MainProcess] beat: Waking up in 5.00 minutes. + +==> /tmp/tmpqrlh6ih1/gravity/log/gunicorn.log <== +uvicorn.access INFO 2024-02-23 14:36:36,013 [pN:main.1,p:78709,tN:MainThread] 127.0.0.1:47172 - "GET /history/current_history_json?since=2024-02-23T19:31:05.000216 HTTP/1.1" 200 +uvicorn.access INFO 2024-02-23 14:36:37,534 [pN:main.1,p:78709,tN:MainThread] 127.0.0.1:47172 - "GET /api/entry_points?running=true HTTP/1.1" 200 +uvicorn.access INFO 2024-02-23 14:36:39,042 [pN:main.1,p:78709,tN:MainThread] 127.0.0.1:47172 - "GET /history/current_history_json?since=2024-02-23T19:31:05.000216 HTTP/1.1" 200 +uvicorn.access INFO 2024-02-23 14:36:42,077 [pN:main.1,p:78709,tN:MainThread] 127.0.0.1:47182 - "GET /history/current_history_json?since=2024-02-23T19:31:05.000216 HTTP/1.1" 200 +uvicorn.access INFO 2024-02-23 14:36:45,106 [pN:main.1,p:78709,tN:MainThread] 127.0.0.1:47188 - "GET /history/current_history_json?since=2024-02-23T19:31:05.000216 HTTP/1.1" 200 +uvicorn.access INFO 2024-02-23 14:36:47,538 [pN:main.1,p:78709,tN:MainThread] 127.0.0.1:51220 - "GET /api/entry_points?running=true HTTP/1.1" 200 +uvicorn.access INFO 2024-02-23 14:36:48,135 [pN:main.1,p:78709,tN:MainThread] 127.0.0.1:51220 - "GET /history/current_history_json?since=2024-02-23T19:31:05.000216 HTTP/1.1" 200 +uvicorn.access INFO 2024-02-23 14:36:51,166 [pN:main.1,p:78709,tN:MainThread] 127.0.0.1:51236 - "GET /history/current_history_json?since=2024-02-23T19:31:05.000216 HTTP/1.1" 200 +uvicorn.access INFO 2024-02-23 14:36:54,194 [pN:main.1,p:78709,tN:MainThread] 127.0.0.1:51252 - "GET /history/current_history_json?since=2024-02-23T19:31:05.000216 HTTP/1.1" 200 +uvicorn.access INFO 2024-02-23 14:36:57,223 [pN:main.1,p:78709,tN:MainThread] 127.0.0.1:59054 - "GET /history/current_history_json?since=2024-02-23T19:31:05.000216 HTTP/1.1" 200 +uvicorn.access INFO 2024-02-23 14:36:57,539 [pN:main.1,p:78709,tN:MainThread] 127.0.0.1:59054 - "GET /api/entry_points?running=true HTTP/1.1" 200 +uvicorn.access INFO 2024-02-23 14:37:00,252 [pN:main.1,p:78709,tN:MainThread] 127.0.0.1:59056 - "GET /history/current_history_json?since=2024-02-23T19:31:05.000216 HTTP/1.1" 200 +uvicorn.access INFO 2024-02-23 14:37:03,283 [pN:main.1,p:78709,tN:MainThread] 127.0.0.1:59058 - "GET /history/current_history_json?since=2024-02-23T19:31:05.000216 HTTP/1.1" 200 +uvicorn.access INFO 2024-02-23 14:37:06,312 [pN:main.1,p:78709,tN:MainThread] 127.0.0.1:40442 - "GET /history/current_history_json?since=2024-02-23T19:31:05.000216 HTTP/1.1" 200 +uvicorn.access INFO 2024-02-23 14:37:07,540 [pN:main.1,p:78709,tN:MainThread] 127.0.0.1:40442 - "GET /api/entry_points?running=true HTTP/1.1" 200 +uvicorn.access INFO 2024-02-23 14:37:09,340 [pN:main.1,p:78709,tN:MainThread] 127.0.0.1:40442 - "GET /history/current_history_json?since=2024-02-23T19:31:05.000216 HTTP/1.1" 200 +uvicorn.access INFO 2024-02-23 14:37:12,369 [pN:main.1,p:78709,tN:MainThread] 127.0.0.1:40452 - "GET /history/current_history_json?since=2024-02-23T19:31:05.000216 HTTP/1.1" 200 +uvicorn.access INFO 2024-02-23 14:37:15,399 [pN:main.1,p:78709,tN:MainThread] 127.0.0.1:40466 - "GET /history/current_history_json?since=2024-02-23T19:31:05.000216 HTTP/1.1" 200 +uvicorn.access INFO 2024-02-23 14:37:17,540 [pN:main.1,p:78709,tN:MainThread] 127.0.0.1:33438 - "GET /api/entry_points?running=true HTTP/1.1" 200 +uvicorn.access INFO 2024-02-23 14:37:18,427 [pN:main.1,p:78709,tN:MainThread] 127.0.0.1:33438 - "GET /history/current_history_json?since=2024-02-23T19:31:05.000216 HTTP/1.1" 200 +uvicorn.access INFO 2024-02-23 14:37:21,460 [pN:main.1,p:78709,tN:MainThread] 127.0.0.1:33454 - "GET /history/current_history_json?since=2024-02-23T19:31:05.000216 HTTP/1.1" 200 +uvicorn.access INFO 2024-02-23 14:37:24,489 [pN:main.1,p:78709,tN:MainThread] 127.0.0.1:33460 - "GET /history/current_history_json?since=2024-02-23T19:31:05.000216 HTTP/1.1" 200 +uvicorn.access INFO 2024-02-23 14:37:27,518 [pN:main.1,p:78709,tN:MainThread] 127.0.0.1:35406 - "GET /history/current_history_json?since=2024-02-23T19:31:05.000216 HTTP/1.1" 200 +uvicorn.access INFO 2024-02-23 14:37:27,540 [pN:main.1,p:78709,tN:MainThread] 127.0.0.1:35420 - "GET /api/entry_points?running=true HTTP/1.1" 200 +uvicorn.access INFO 2024-02-23 14:37:30,550 [pN:main.1,p:78709,tN:MainThread] 127.0.0.1:35436 - "GET /history/current_history_json?since=2024-02-23T19:31:05.000216 HTTP/1.1" 200 +uvicorn.access INFO 2024-02-23 14:37:33,583 [pN:main.1,p:78709,tN:MainThread] 127.0.0.1:35442 - "GET /history/current_history_json?since=2024-02-23T19:31:05.000216 HTTP/1.1" 200 +uvicorn.access INFO 2024-02-23 14:37:36,611 [pN:main.1,p:78709,tN:MainThread] 127.0.0.1:48378 - "GET /history/current_history_json?since=2024-02-23T19:31:05.000216 HTTP/1.1" 200 +uvicorn.access INFO 2024-02-23 14:37:37,543 [pN:main.1,p:78709,tN:MainThread] 127.0.0.1:48378 - "GET /api/entry_points?running=true HTTP/1.1" 200 +uvicorn.access INFO 2024-02-23 14:37:39,651 [pN:main.1,p:78709,tN:MainThread] 127.0.0.1:48384 - "GET /history/current_history_json?since=2024-02-23T19:31:05.000216 HTTP/1.1" 200 +uvicorn.access INFO 2024-02-23 14:37:42,682 [pN:main.1,p:78709,tN:MainThread] 127.0.0.1:48392 - "GET /history/current_history_json?since=2024-02-23T19:31:05.000216 HTTP/1.1" 200 +uvicorn.access INFO 2024-02-23 14:37:45,764 [pN:main.1,p:78709,tN:MainThread] 127.0.0.1:42318 - "GET /history/current_history_json?since=2024-02-23T19:31:05.000216 HTTP/1.1" 200 +uvicorn.access INFO 2024-02-23 14:37:47,545 [pN:main.1,p:78709,tN:MainThread] 127.0.0.1:42318 - "GET /api/entry_points?running=true HTTP/1.1" 200 +uvicorn.access INFO 2024-02-23 14:37:48,830 [pN:main.1,p:78709,tN:MainThread] 127.0.0.1:42318 - "GET /history/current_history_json?since=2024-02-23T19:31:05.000216 HTTP/1.1" 200 +uvicorn.access INFO 2024-02-23 14:37:51,858 [pN:main.1,p:78709,tN:MainThread] 127.0.0.1:42334 - "GET /history/current_history_json?since=2024-02-23T19:31:05.000216 HTTP/1.1" 200 +uvicorn.access INFO 2024-02-23 14:37:54,890 [pN:main.1,p:78709,tN:MainThread] 127.0.0.1:42350 - "GET /history/current_history_json?since=2024-02-23T19:31:05.000216 HTTP/1.1" 200 +uvicorn.access INFO 2024-02-23 14:37:57,545 [pN:main.1,p:78709,tN:MainThread] 127.0.0.1:58970 - "GET /api/entry_points?running=true HTTP/1.1" 200 +uvicorn.access INFO 2024-02-23 14:37:57,918 [pN:main.1,p:78709,tN:MainThread] 127.0.0.1:58970 - "GET /history/current_history_json?since=2024-02-23T19:31:05.000216 HTTP/1.1" 200 +uvicorn.access INFO 2024-02-23 14:38:01,223 [pN:main.1,p:78709,tN:MainThread] 127.0.0.1:58972 - "GET /history/current_history_json?since=2024-02-23T19:31:05.000216 HTTP/1.1" 200 +uvicorn.access INFO 2024-02-23 14:38:05,315 [pN:main.1,p:78709,tN:MainThread] 127.0.0.1:58982 - "GET /history/current_history_json?since=2024-02-23T19:31:05.000216 HTTP/1.1" 200 +uvicorn.access INFO 2024-02-23 14:38:07,464 [pN:main.1,p:78709,tN:MainThread] 127.0.0.1:38296 - "GET /api/tools/ncbi_fcs_adaptor/build?version=latest&tool_version=latest HTTP/1.1" 200 +uvicorn.access INFO 2024-02-23 14:38:07,569 [pN:main.1,p:78709,tN:MainThread] 127.0.0.1:38296 - "POST /api/tools/ncbi_fcs_adaptor/build HTTP/1.1" 200 +uvicorn.access INFO 2024-02-23 14:38:07,598 [pN:main.1,p:78709,tN:MainThread] 127.0.0.1:38312 - "GET /api/entry_points?running=true HTTP/1.1" 200 +uvicorn.access INFO 2024-02-23 14:38:08,342 [pN:main.1,p:78709,tN:MainThread] 127.0.0.1:38312 - "GET /history/current_history_json?since=2024-02-23T19:31:05.000216 HTTP/1.1" 200 +uvicorn.access INFO 2024-02-23 14:38:11,372 [pN:main.1,p:78709,tN:MainThread] 127.0.0.1:38318 - "GET /history/current_history_json?since=2024-02-23T19:31:05.000216 HTTP/1.1" 200 +uvicorn.access INFO 2024-02-23 14:38:14,401 [pN:main.1,p:78709,tN:MainThread] 127.0.0.1:38326 - "GET /history/current_history_json?since=2024-02-23T19:31:05.000216 HTTP/1.1" 200 +uvicorn.access INFO 2024-02-23 14:38:17,430 [pN:main.1,p:78709,tN:MainThread] 127.0.0.1:40108 - "GET /history/current_history_json?since=2024-02-23T19:31:05.000216 HTTP/1.1" 200 +uvicorn.access INFO 2024-02-23 14:38:17,588 [pN:main.1,p:78709,tN:MainThread] 127.0.0.1:40108 - "GET /api/entry_points?running=true HTTP/1.1" 200 +galaxy.tools INFO 2024-02-23 14:38:19,507 [pN:main.1,p:78709,tN:WSGI_7] Validated and populated state for tool request (4.275 ms) +galaxy.tools.actions INFO 2024-02-23 14:38:19,523 [pN:main.1,p:78709,tN:WSGI_7] Handled output named output1 for tool CONVERTER_gz_to_uncompressed (1.515 ms) +galaxy.tools.actions INFO 2024-02-23 14:38:19,523 [pN:main.1,p:78709,tN:WSGI_7] Added output datasets to history (0.330 ms) +galaxy.tools.actions INFO 2024-02-23 14:38:19,525 [pN:main.1,p:78709,tN:WSGI_7] Setup for job Job[unflushed,tool_id=CONVERTER_gz_to_uncompressed] complete, ready to be enqueued (1.727 ms) +galaxy.tools.actions INFO 2024-02-23 14:38:19,553 [pN:main.1,p:78709,tN:WSGI_7] Flushed transaction for job Job[id=2,tool_id=CONVERTER_gz_to_uncompressed] (27.383 ms) +galaxy.web_stack.handlers INFO 2024-02-23 14:38:19,562 [pN:main.1,p:78709,tN:WSGI_7] Flushed transaction for Job[id=2,tool_id=CONVERTER_gz_to_uncompressed] (8.918 ms) +galaxy.web_stack.handlers INFO 2024-02-23 14:38:19,562 [pN:main.1,p:78709,tN:WSGI_7] (Job[id=2,tool_id=CONVERTER_gz_to_uncompressed]) Handler '_default_' assigned using 'HANDLER_ASSIGNMENT_METHODS.DB_SKIP_LOCKED' assignment method +galaxy.tools.actions INFO 2024-02-23 14:38:19,600 [pN:main.1,p:78709,tN:WSGI_7] Handled output named adaptor_report for tool ncbi_fcs_adaptor (4.755 ms) +galaxy.tools.actions INFO 2024-02-23 14:38:19,603 [pN:main.1,p:78709,tN:WSGI_7] Handled output named clean_fasta for tool ncbi_fcs_adaptor (2.600 ms) +galaxy.tools.actions INFO 2024-02-23 14:38:19,611 [pN:main.1,p:78709,tN:WSGI_7] Added output datasets to history (7.890 ms) +galaxy.tools.actions INFO 2024-02-23 14:38:19,612 [pN:main.1,p:78709,tN:WSGI_7] Setup for job Job[unflushed,tool_id=ncbi_fcs_adaptor] complete, ready to be enqueued (1.323 ms) +galaxy.tools.execute DEBUG 2024-02-23 14:38:19,613 [pN:main.1,p:78709,tN:WSGI_7] Tool ncbi_fcs_adaptor created job None (102.802 ms) +galaxy.web_stack.handlers INFO 2024-02-23 14:38:19,632 [pN:main.1,p:78709,tN:WSGI_7] (Job[id=3,tool_id=ncbi_fcs_adaptor]) Handler '_default_' assigned using 'HANDLER_ASSIGNMENT_METHODS.DB_SKIP_LOCKED' assignment method +galaxy.tools.execute DEBUG 2024-02-23 14:38:19,636 [pN:main.1,p:78709,tN:WSGI_7] Created 1 job(s) for tool ncbi_fcs_adaptor request (128.259 ms) +uvicorn.access INFO 2024-02-23 14:38:19,648 [pN:main.1,p:78709,tN:MainThread] 127.0.0.1:40108 - "POST /api/tools HTTP/1.1" 200 +uvicorn.access INFO 2024-02-23 14:38:19,678 [pN:main.1,p:78709,tN:MainThread] 127.0.0.1:40108 - "GET /history/current_history_json?since=2024-02-23T19:31:05.000216 HTTP/1.1" 200 +uvicorn.access INFO 2024-02-23 14:38:19,732 [pN:main.1,p:78709,tN:MainThread] 127.0.0.1:40108 - "GET /api/histories/e94ef2b25ec88be9/contents?v=dev&limit=1000&q=update_time-ge&qv=2024-02-23T19:31:05.566Z HTTP/1.1" 200 +galaxy.jobs.mapper DEBUG 2024-02-23 14:38:19,766 [pN:main.1,p:78709,tN:JobHandlerQueue.monitor_thread] (2) Mapped job to destination id: docker_local +galaxy.jobs.handler DEBUG 2024-02-23 14:38:19,773 [pN:main.1,p:78709,tN:JobHandlerQueue.monitor_thread] (2) Dispatching to local runner +galaxy.jobs DEBUG 2024-02-23 14:38:19,800 [pN:main.1,p:78709,tN:JobHandlerQueue.monitor_thread] (2) Persisting job destination (destination id: docker_local) +uvicorn.access INFO 2024-02-23 14:38:19,828 [pN:main.1,p:78709,tN:MainThread] 127.0.0.1:40108 - "GET /api/users/e94ef2b25ec88be9 HTTP/1.1" 200 +uvicorn.access INFO 2024-02-23 14:38:19,856 [pN:main.1,p:78709,tN:MainThread] 127.0.0.1:40112 - "GET /api/histories/e94ef2b25ec88be9/contents?v=dev&order=hid&offset=0&limit=100&q=deleted&qv=false&q=visible&qv=true HTTP/1.1" 200 +galaxy.jobs DEBUG 2024-02-23 14:38:19,858 [pN:main.1,p:78709,tN:JobHandlerQueue.monitor_thread] (2) Working directory for job is: /tmp/tmpqrlh6ih1/job_working_directory/000/2 +galaxy.jobs.runners DEBUG 2024-02-23 14:38:19,870 [pN:main.1,p:78709,tN:JobHandlerQueue.monitor_thread] Job [2] queued (96.880 ms) +galaxy.jobs.handler INFO 2024-02-23 14:38:19,884 [pN:main.1,p:78709,tN:JobHandlerQueue.monitor_thread] (2) Job dispatched +galaxy.jobs DEBUG 2024-02-23 14:38:19,938 [pN:main.1,p:78709,tN:LocalRunner.work_thread-3] Job wrapper for Job [2] prepared (47.790 ms) +galaxy.tool_util.deps.containers INFO 2024-02-23 14:38:19,939 [pN:main.1,p:78709,tN:LocalRunner.work_thread-3] Checking with container resolver [ExplicitContainerResolver[]] found description [None] +galaxy.tool_util.deps.container_resolvers.mulled DEBUG 2024-02-23 14:38:19,939 [pN:main.1,p:78709,tN:LocalRunner.work_thread-3] Image name for tool CONVERTER_gz_to_uncompressed: no targets +galaxy.tool_util.deps.containers INFO 2024-02-23 14:38:19,939 [pN:main.1,p:78709,tN:LocalRunner.work_thread-3] Checking with container resolver [CachedMulledDockerContainerResolver[namespace=biocontainers]] found description [None] +galaxy.tool_util.deps.container_resolvers.mulled DEBUG 2024-02-23 14:38:19,939 [pN:main.1,p:78709,tN:LocalRunner.work_thread-3] Image name for tool CONVERTER_gz_to_uncompressed: no targets +galaxy.tool_util.deps.containers INFO 2024-02-23 14:38:19,939 [pN:main.1,p:78709,tN:LocalRunner.work_thread-3] Checking with container resolver [CachedMulledDockerContainerResolver[namespace=local]] found description [None] +galaxy.tool_util.deps.container_resolvers.mulled DEBUG 2024-02-23 14:38:19,939 [pN:main.1,p:78709,tN:LocalRunner.work_thread-3] Image name for tool CONVERTER_gz_to_uncompressed: no targets +galaxy.tool_util.deps.containers INFO 2024-02-23 14:38:19,939 [pN:main.1,p:78709,tN:LocalRunner.work_thread-3] Checking with container resolver [MulledDockerContainerResolver[namespace=biocontainers]] found description [None] +galaxy.tool_util.deps.container_resolvers.mulled DEBUG 2024-02-23 14:38:19,939 [pN:main.1,p:78709,tN:LocalRunner.work_thread-3] Image name for tool CONVERTER_gz_to_uncompressed: no targets +galaxy.tool_util.deps.containers INFO 2024-02-23 14:38:19,939 [pN:main.1,p:78709,tN:LocalRunner.work_thread-3] Checking with container resolver [BuildDockerContainerResolver[namespace=local]] found description [None] +galaxy.jobs.command_factory INFO 2024-02-23 14:38:19,971 [pN:main.1,p:78709,tN:LocalRunner.work_thread-3] Built script [/tmp/tmpqrlh6ih1/job_working_directory/000/2/tool_script.sh] for tool command [cp '/tmp/tmpqrlh6ih1/job_working_directory/000/2/configs/tmputamy64b' 'galaxy.json' && gzip -dcf '/tmp/tmpqrlh6ih1/files/b/2/5/dataset_b25039b4-189c-4c5a-9380-009d996fbf23.dat' > '/tmp/tmpqrlh6ih1/job_working_directory/000/2/outputs/dataset_9eacd1c3-39c4-4284-879f-5d377c761f3e.dat'] +galaxy.jobs.runners DEBUG 2024-02-23 14:38:20,010 [pN:main.1,p:78709,tN:LocalRunner.work_thread-3] (2) command is: mkdir -p working outputs configs +if [ -d _working ]; then + rm -rf working/ outputs/ configs/; cp -R _working working; cp -R _outputs outputs; cp -R _configs configs +else + cp -R working _working; cp -R outputs _outputs; cp -R configs _configs +fi +cd working; /bin/bash /tmp/tmpqrlh6ih1/job_working_directory/000/2/tool_script.sh > '../outputs/tool_stdout' 2> '../outputs/tool_stderr'; return_code=$?; echo $return_code > /tmp/tmpqrlh6ih1/job_working_directory/000/2/galaxy_2.ec; cd '/tmp/tmpqrlh6ih1/job_working_directory/000/2'; +[ "$GALAXY_VIRTUAL_ENV" = "None" ] && GALAXY_VIRTUAL_ENV="$_GALAXY_VIRTUAL_ENV"; _galaxy_setup_environment True; python metadata/set.py; sh -c "exit $return_code" +galaxy.jobs.runners.local DEBUG 2024-02-23 14:38:20,036 [pN:main.1,p:78709,tN:LocalRunner.work_thread-3] (2) executing job script: /tmp/tmpqrlh6ih1/job_working_directory/000/2/galaxy_2.sh +uvicorn.access INFO 2024-02-23 14:38:22,837 [pN:main.1,p:78709,tN:MainThread] 127.0.0.1:40116 - "GET /history/current_history_json?since=2024-02-23T19:38:19.000622 HTTP/1.1" 200 +uvicorn.access INFO 2024-02-23 14:38:22,871 [pN:main.1,p:78709,tN:MainThread] 127.0.0.1:40116 - "GET /api/histories/e94ef2b25ec88be9/contents?v=dev&limit=1000&q=update_time-ge&qv=2024-02-23T19:38:19.686Z HTTP/1.1" 200 +uvicorn.access INFO 2024-02-23 14:38:22,921 [pN:main.1,p:78709,tN:MainThread] 127.0.0.1:40116 - "GET /api/users/e94ef2b25ec88be9 HTTP/1.1" 200 +uvicorn.access INFO 2024-02-23 14:38:22,946 [pN:main.1,p:78709,tN:MainThread] 127.0.0.1:40118 - "GET /api/histories/e94ef2b25ec88be9/contents?v=dev&order=hid&offset=0&limit=100&q=deleted&qv=false&q=visible&qv=true HTTP/1.1" 200 +galaxy.jobs.runners.util.process_groups DEBUG 2024-02-23 14:38:23,760 [pN:main.1,p:78709,tN:LocalRunner.work_thread-3] check_pg(): No process found in process group 79031 +galaxy.jobs.runners.local DEBUG 2024-02-23 14:38:23,761 [pN:main.1,p:78709,tN:LocalRunner.work_thread-3] execution finished: /tmp/tmpqrlh6ih1/job_working_directory/000/2/galaxy_2.sh +galaxy.jobs DEBUG 2024-02-23 14:38:23,783 [pN:main.1,p:78709,tN:LocalRunner.work_thread-3] finish(): Moved /tmp/tmpqrlh6ih1/job_working_directory/000/2/outputs/dataset_9eacd1c3-39c4-4284-879f-5d377c761f3e.dat to /tmp/tmpqrlh6ih1/files/9/e/a/dataset_9eacd1c3-39c4-4284-879f-5d377c761f3e.dat +galaxy.tool_util.provided_metadata DEBUG 2024-02-23 14:38:23,790 [pN:main.1,p:78709,tN:LocalRunner.work_thread-3] unnamed outputs [{'output1': {'name': 'fcsadaptor_prok_test.fa uncompressed', 'ext': 'fasta'}}] +galaxy.model.metadata DEBUG 2024-02-23 14:38:23,795 [pN:main.1,p:78709,tN:LocalRunner.work_thread-3] loading metadata from file for: HistoryDatasetAssociation 2 +galaxy.jobs DEBUG 2024-02-23 14:38:23,823 [pN:main.1,p:78709,tN:LocalRunner.work_thread-3] job_wrapper.finish for job 2 executed (45.391 ms) +galaxy.jobs.mapper DEBUG 2024-02-23 14:38:23,983 [pN:main.1,p:78709,tN:JobHandlerQueue.monitor_thread] (3) Mapped job to destination id: docker_local +galaxy.jobs.handler DEBUG 2024-02-23 14:38:23,986 [pN:main.1,p:78709,tN:JobHandlerQueue.monitor_thread] (3) Dispatching to local runner +galaxy.jobs DEBUG 2024-02-23 14:38:23,991 [pN:main.1,p:78709,tN:JobHandlerQueue.monitor_thread] (3) Persisting job destination (destination id: docker_local) +galaxy.jobs DEBUG 2024-02-23 14:38:23,996 [pN:main.1,p:78709,tN:JobHandlerQueue.monitor_thread] (3) Working directory for job is: /tmp/tmpqrlh6ih1/job_working_directory/000/3 +galaxy.jobs.runners DEBUG 2024-02-23 14:38:24,002 [pN:main.1,p:78709,tN:JobHandlerQueue.monitor_thread] Job [3] queued (15.947 ms) +galaxy.jobs.handler INFO 2024-02-23 14:38:24,010 [pN:main.1,p:78709,tN:JobHandlerQueue.monitor_thread] (3) Job dispatched +galaxy.security.object_wrapper WARNING 2024-02-23 14:38:24,049 [pN:main.1,p:78709,tN:LocalRunner.work_thread-2] Unable to create dynamic subclass SafeStringWrapper__galaxy.model.none_like.None__NoneType__NotImplementedType__Number__SafeStringWrapper__ToolParameterValueWrapper__bool__bytearray__ellipsis for <class 'galaxy.model.none_like.NoneDataset'>, None: type() doesn't support MRO entry resolution; use types.new_class() +galaxy.jobs DEBUG 2024-02-23 14:38:24,062 [pN:main.1,p:78709,tN:LocalRunner.work_thread-2] Job wrapper for Job [3] prepared (43.024 ms) +galaxy.tool_util.deps.containers INFO 2024-02-23 14:38:24,062 [pN:main.1,p:78709,tN:LocalRunner.work_thread-2] Checking with container resolver [ExplicitContainerResolver[]] found description [ContainerDescription[identifier=ncbi/fcs-adaptor:0.5.0,type=docker]] +galaxy.jobs.command_factory INFO 2024-02-23 14:38:24,104 [pN:main.1,p:78709,tN:LocalRunner.work_thread-2] Built script [/tmp/tmpqrlh6ih1/job_working_directory/000/3/tool_script.sh] for tool command [/app/fcs/bin/av_screen_x -o "$(pwd)" '--prok' '/tmp/tmpqrlh6ih1/files/9/e/a/dataset_9eacd1c3-39c4-4284-879f-5d377c761f3e.dat'] +galaxy.jobs.runners DEBUG 2024-02-23 14:38:24,149 [pN:main.1,p:78709,tN:LocalRunner.work_thread-2] (3) command is: mkdir -p working outputs configs +if [ -d _working ]; then + rm -rf working/ outputs/ configs/; cp -R _working working; cp -R _outputs outputs; cp -R _configs configs +else + cp -R working _working; cp -R outputs _outputs; cp -R configs _configs +fi +cd working; +_on_exit() { + docker kill ddbfcc5b6a8b487cbddefc4091d43dcb &> /dev/null +} +trap _on_exit EXIT +docker inspect ncbi/fcs-adaptor:0.5.0 > /dev/null 2>&1 +[ $? -ne 0 ] && docker pull ncbi/fcs-adaptor:0.5.0 > /dev/null 2>&1 + +docker run -e "GALAXY_SLOTS=$GALAXY_SLOTS" -e "GALAXY_MEMORY_MB=$GALAXY_MEMORY_MB" -e "GALAXY_MEMORY_MB_PER_SLOT=$GALAXY_MEMORY_MB_PER_SLOT" -e "HOME=$HOME" -e "_GALAXY_JOB_HOME_DIR=$_GALAXY_JOB_HOME_DIR" -e "_GALAXY_JOB_TMP_DIR=$_GALAXY_JOB_TMP_DIR" -e "TMPDIR=$TMPDIR" -e "TMP=$TMP" -e "TEMP=$TEMP" --name ddbfcc5b6a8b487cbddefc4091d43dcb -v "$_GALAXY_JOB_TMP_DIR:$_GALAXY_JOB_TMP_DIR:rw" -v "$TMPDIR:$TMPDIR:rw" -v "$TMP:$TMP:rw" -v "$TEMP:$TEMP:rw" -v /scratch/rico/galaxy:/scratch/rico/galaxy:ro -v /scratch/rico/galaxytools/tools/ncbi_fcs_adaptor:/scratch/rico/galaxytools/tools/ncbi_fcs_adaptor:ro -v /tmp/tmpqrlh6ih1/job_working_directory/000/3:/tmp/tmpqrlh6ih1/job_working_directory/000/3:ro -v /tmp/tmpqrlh6ih1/job_working_directory/000/3/outputs:/tmp/tmpqrlh6ih1/job_working_directory/000/3/outputs:rw -v "$_GALAXY_JOB_HOME_DIR:$_GALAXY_JOB_HOME_DIR:rw" -v /tmp/tmpqrlh6ih1/job_working_directory/000/3/working:/tmp/tmpqrlh6ih1/job_working_directory/000/3/working:rw -v /tmp/tmpqrlh6ih1/files:/tmp/tmpqrlh6ih1/files:ro -v /scratch/rico/galaxy/tool-data:/scratch/rico/galaxy/tool-data:ro --cpus ${GALAXY_SLOTS:-1} -w /tmp/tmpqrlh6ih1/job_working_directory/000/3/working --rm --user 1028:1028 ncbi/fcs-adaptor:0.5.0 /bin/sh /tmp/tmpqrlh6ih1/job_working_directory/000/3/tool_script.sh > '../outputs/tool_stdout' 2> '../outputs/tool_stderr'; return_code=$?; echo $return_code > /tmp/tmpqrlh6ih1/job_working_directory/000/3/galaxy_3.ec; +if [ -f "/tmp/tmpqrlh6ih1/job_working_directory/000/3/working/fcs_adaptor_report.txt" ] ; then cp "/tmp/tmpqrlh6ih1/job_working_directory/000/3/working/fcs_adaptor_report.txt" "/tmp/tmpqrlh6ih1/job_working_directory/000/3/outputs/dataset_baab9cb3-daf7-4634-b244-35ef4dfc423e.dat" ; fi; +if [ -f "/tmp/tmpqrlh6ih1/job_working_directory/000/3/working/cleaned_sequences/"*".dat" ] ; then cp "/tmp/tmpqrlh6ih1/job_working_directory/000/3/working/cleaned_sequences/"*".dat" "/tmp/tmpqrlh6ih1/job_working_directory/000/3/outputs/dataset_6151fe42-edab-4c01-b97a-3428cd1f28b4.dat" ; fi; cd '/tmp/tmpqrlh6ih1/job_working_directory/000/3'; +[ "$GALAXY_VIRTUAL_ENV" = "None" ] && GALAXY_VIRTUAL_ENV="$_GALAXY_VIRTUAL_ENV"; _galaxy_setup_environment True; python metadata/set.py; sh -c "exit $return_code" +galaxy.jobs.runners.local DEBUG 2024-02-23 14:38:24,173 [pN:main.1,p:78709,tN:LocalRunner.work_thread-2] (3) executing job script: /tmp/tmpqrlh6ih1/job_working_directory/000/3/galaxy_3.sh +uvicorn.access INFO 2024-02-23 14:38:25,943 [pN:main.1,p:78709,tN:MainThread] 127.0.0.1:33910 - "GET /history/current_history_json?since=2024-02-23T19:38:20.000081 HTTP/1.1" 200 +uvicorn.access INFO 2024-02-23 14:38:26,002 [pN:main.1,p:78709,tN:MainThread] 127.0.0.1:33910 - "GET /api/histories/e94ef2b25ec88be9/contents?v=dev&limit=1000&q=update_time-ge&qv=2024-02-23T19:38:22.844Z HTTP/1.1" 200 +uvicorn.access INFO 2024-02-23 14:38:26,102 [pN:main.1,p:78709,tN:MainThread] 127.0.0.1:33910 - "GET /api/users/e94ef2b25ec88be9 HTTP/1.1" 200 +uvicorn.access INFO 2024-02-23 14:38:26,133 [pN:main.1,p:78709,tN:MainThread] 127.0.0.1:33920 - "GET /api/histories/e94ef2b25ec88be9/contents?v=dev&order=hid&offset=0&limit=100&q=deleted&qv=false&q=visible&qv=true HTTP/1.1" 200 +uvicorn.access INFO 2024-02-23 14:38:27,588 [pN:main.1,p:78709,tN:MainThread] 127.0.0.1:33920 - "GET /api/entry_points?running=true HTTP/1.1" 200 +uvicorn.access INFO 2024-02-23 14:38:29,108 [pN:main.1,p:78709,tN:MainThread] 127.0.0.1:33922 - "GET /history/current_history_json?since=2024-02-23T19:38:24.000221 HTTP/1.1" 200 +uvicorn.access INFO 2024-02-23 14:38:29,128 [pN:main.1,p:78709,tN:MainThread] 127.0.0.1:33920 - "GET /api/datasets/b35bb5a57277f2b7?view=detailed HTTP/1.1" 200 +uvicorn.access INFO 2024-02-23 14:38:30,842 [pN:main.1,p:78709,tN:MainThread] 127.0.0.1:33920 - "GET /api/jobs/b35bb5a57277f2b7/build_for_rerun HTTP/1.1" 200 +uvicorn.access INFO 2024-02-23 14:38:30,927 [pN:main.1,p:78709,tN:MainThread] 127.0.0.1:33920 - "POST /api/tools/ncbi_fcs_adaptor/build HTTP/1.1" 200 +uvicorn.access INFO 2024-02-23 14:38:32,135 [pN:main.1,p:78709,tN:MainThread] 127.0.0.1:33920 - "GET /history/current_history_json?since=2024-02-23T19:38:24.000221 HTTP/1.1" 200 +galaxy.tools INFO 2024-02-23 14:38:34,946 [pN:main.1,p:78709,tN:WSGI_8] Validated and populated state for tool request (4.404 ms) +galaxy.tools.actions INFO 2024-02-23 14:38:34,953 [pN:main.1,p:78709,tN:WSGI_8] Handled output named adaptor_report for tool ncbi_fcs_adaptor (0.981 ms) +galaxy.tools.actions INFO 2024-02-23 14:38:34,953 [pN:main.1,p:78709,tN:WSGI_8] Handled output named clean_fasta for tool ncbi_fcs_adaptor (0.660 ms) +galaxy.tools.actions DEBUG 2024-02-23 14:38:34,953 [pN:main.1,p:78709,tN:WSGI_8] Tool ncbi_fcs_adaptor output adaptor_log: dataset output filter (advanced['optional_log'] is not None and 'adaptor_log' in advanced['optional_log'].split(',')) failed: 'list' object has no attribute 'split' +galaxy.tools.actions INFO 2024-02-23 14:38:34,956 [pN:main.1,p:78709,tN:WSGI_8] Handled output named adaptor_log for tool ncbi_fcs_adaptor (2.348 ms) +galaxy.tools.actions DEBUG 2024-02-23 14:38:34,956 [pN:main.1,p:78709,tN:WSGI_8] Tool ncbi_fcs_adaptor output validate_fasta_log: dataset output filter (advanced['optional_log'] is not None and 'validate_fasta_log' in advanced['optional_log'].split(',')) failed: 'list' object has no attribute 'split' +galaxy.tools.actions INFO 2024-02-23 14:38:34,958 [pN:main.1,p:78709,tN:WSGI_8] Handled output named validate_fasta_log for tool ncbi_fcs_adaptor (2.229 ms) +galaxy.tools.actions INFO 2024-02-23 14:38:34,966 [pN:main.1,p:78709,tN:WSGI_8] Added output datasets to history (7.143 ms) +galaxy.tools.actions INFO 2024-02-23 14:38:34,968 [pN:main.1,p:78709,tN:WSGI_8] Setup for job Job[unflushed,tool_id=ncbi_fcs_adaptor] complete, ready to be enqueued (1.981 ms) +galaxy.tools.execute DEBUG 2024-02-23 14:38:34,968 [pN:main.1,p:78709,tN:WSGI_8] Tool ncbi_fcs_adaptor created job None (19.954 ms) +galaxy.web_stack.handlers INFO 2024-02-23 14:38:34,988 [pN:main.1,p:78709,tN:WSGI_8] (Job[id=4,tool_id=ncbi_fcs_adaptor]) Handler '_default_' assigned using 'HANDLER_ASSIGNMENT_METHODS.DB_SKIP_LOCKED' assignment method +galaxy.tools.execute DEBUG 2024-02-23 14:38:34,991 [pN:main.1,p:78709,tN:WSGI_8] Created 1 job(s) for tool ncbi_fcs_adaptor request (45.036 ms) +uvicorn.access INFO 2024-02-23 14:38:35,007 [pN:main.1,p:78709,tN:MainThread] 127.0.0.1:33928 - "POST /api/tools HTTP/1.1" 200 +uvicorn.access INFO 2024-02-23 14:38:35,036 [pN:main.1,p:78709,tN:MainThread] 127.0.0.1:33928 - "GET /history/current_history_json?since=2024-02-23T19:38:24.000221 HTTP/1.1" 200 +uvicorn.access INFO 2024-02-23 14:38:35,092 [pN:main.1,p:78709,tN:MainThread] 127.0.0.1:33928 - "GET /api/histories/e94ef2b25ec88be9/contents?v=dev&limit=1000&q=update_time-ge&qv=2024-02-23T19:38:25.956Z&details=b35bb5a57277f2b7 HTTP/1.1" 200 +uvicorn.access INFO 2024-02-23 14:38:35,135 [pN:main.1,p:78709,tN:MainThread] 127.0.0.1:33928 - "GET /api/users/e94ef2b25ec88be9 HTTP/1.1" 200 +uvicorn.access INFO 2024-02-23 14:38:35,156 [pN:main.1,p:78709,tN:MainThread] 127.0.0.1:33940 - "GET /api/histories/e94ef2b25ec88be9/contents?v=dev&order=hid&offset=0&limit=100&q=deleted&qv=false&q=visible&qv=true HTTP/1.1" 200 +galaxy.jobs.mapper DEBUG 2024-02-23 14:38:35,297 [pN:main.1,p:78709,tN:JobHandlerQueue.monitor_thread] (4) Mapped job to destination id: docker_local +galaxy.jobs.handler DEBUG 2024-02-23 14:38:35,300 [pN:main.1,p:78709,tN:JobHandlerQueue.monitor_thread] (4) Dispatching to local runner +galaxy.jobs DEBUG 2024-02-23 14:38:35,305 [pN:main.1,p:78709,tN:JobHandlerQueue.monitor_thread] (4) Persisting job destination (destination id: docker_local) +galaxy.jobs DEBUG 2024-02-23 14:38:35,310 [pN:main.1,p:78709,tN:JobHandlerQueue.monitor_thread] (4) Working directory for job is: /tmp/tmpqrlh6ih1/job_working_directory/000/4 +galaxy.jobs.runners DEBUG 2024-02-23 14:38:35,316 [pN:main.1,p:78709,tN:JobHandlerQueue.monitor_thread] Job [4] queued (15.787 ms) +galaxy.jobs.handler INFO 2024-02-23 14:38:35,323 [pN:main.1,p:78709,tN:JobHandlerQueue.monitor_thread] (4) Job dispatched +galaxy.jobs DEBUG 2024-02-23 14:38:35,369 [pN:main.1,p:78709,tN:LocalRunner.work_thread-0] Job wrapper for Job [4] prepared (36.045 ms) +galaxy.tool_util.deps.containers INFO 2024-02-23 14:38:35,369 [pN:main.1,p:78709,tN:LocalRunner.work_thread-0] Checking with container resolver [ExplicitContainerResolver[]] found description [ContainerDescription[identifier=ncbi/fcs-adaptor:0.5.0,type=docker]] +galaxy.jobs.command_factory INFO 2024-02-23 14:38:35,400 [pN:main.1,p:78709,tN:LocalRunner.work_thread-0] Built script [/tmp/tmpqrlh6ih1/job_working_directory/000/4/tool_script.sh] for tool command [/app/fcs/bin/av_screen_x -o "$(pwd)" '--prok' '/tmp/tmpqrlh6ih1/files/9/e/a/dataset_9eacd1c3-39c4-4284-879f-5d377c761f3e.dat'] +galaxy.jobs.runners DEBUG 2024-02-23 14:38:35,453 [pN:main.1,p:78709,tN:LocalRunner.work_thread-0] (4) command is: mkdir -p working outputs configs +if [ -d _working ]; then + rm -rf working/ outputs/ configs/; cp -R _working working; cp -R _outputs outputs; cp -R _configs configs +else + cp -R working _working; cp -R outputs _outputs; cp -R configs _configs +fi +cd working; +_on_exit() { + docker kill 0ed49ce4b7a6495fb6c27a5f2b8c6565 &> /dev/null +} +trap _on_exit EXIT +docker inspect ncbi/fcs-adaptor:0.5.0 > /dev/null 2>&1 +[ $? -ne 0 ] && docker pull ncbi/fcs-adaptor:0.5.0 > /dev/null 2>&1 + +docker run -e "GALAXY_SLOTS=$GALAXY_SLOTS" -e "GALAXY_MEMORY_MB=$GALAXY_MEMORY_MB" -e "GALAXY_MEMORY_MB_PER_SLOT=$GALAXY_MEMORY_MB_PER_SLOT" -e "HOME=$HOME" -e "_GALAXY_JOB_HOME_DIR=$_GALAXY_JOB_HOME_DIR" -e "_GALAXY_JOB_TMP_DIR=$_GALAXY_JOB_TMP_DIR" -e "TMPDIR=$TMPDIR" -e "TMP=$TMP" -e "TEMP=$TEMP" --name 0ed49ce4b7a6495fb6c27a5f2b8c6565 -v "$_GALAXY_JOB_TMP_DIR:$_GALAXY_JOB_TMP_DIR:rw" -v "$TMPDIR:$TMPDIR:rw" -v "$TMP:$TMP:rw" -v "$TEMP:$TEMP:rw" -v /scratch/rico/galaxy:/scratch/rico/galaxy:ro -v /scratch/rico/galaxytools/tools/ncbi_fcs_adaptor:/scratch/rico/galaxytools/tools/ncbi_fcs_adaptor:ro -v /tmp/tmpqrlh6ih1/job_working_directory/000/4:/tmp/tmpqrlh6ih1/job_working_directory/000/4:ro -v /tmp/tmpqrlh6ih1/job_working_directory/000/4/outputs:/tmp/tmpqrlh6ih1/job_working_directory/000/4/outputs:rw -v "$_GALAXY_JOB_HOME_DIR:$_GALAXY_JOB_HOME_DIR:rw" -v /tmp/tmpqrlh6ih1/job_working_directory/000/4/working:/tmp/tmpqrlh6ih1/job_working_directory/000/4/working:rw -v /tmp/tmpqrlh6ih1/files:/tmp/tmpqrlh6ih1/files:ro -v /scratch/rico/galaxy/tool-data:/scratch/rico/galaxy/tool-data:ro --cpus ${GALAXY_SLOTS:-1} -w /tmp/tmpqrlh6ih1/job_working_directory/000/4/working --rm --user 1028:1028 ncbi/fcs-adaptor:0.5.0 /bin/sh /tmp/tmpqrlh6ih1/job_working_directory/000/4/tool_script.sh > '../outputs/tool_stdout' 2> '../outputs/tool_stderr'; return_code=$?; echo $return_code > /tmp/tmpqrlh6ih1/job_working_directory/000/4/galaxy_4.ec; +if [ -f "/tmp/tmpqrlh6ih1/job_working_directory/000/4/working/fcs_adaptor_report.txt" ] ; then cp "/tmp/tmpqrlh6ih1/job_working_directory/000/4/working/fcs_adaptor_report.txt" "/tmp/tmpqrlh6ih1/job_working_directory/000/4/outputs/dataset_41844168-8b86-45ce-a8b8-c8552139307c.dat" ; fi; +if [ -f "/tmp/tmpqrlh6ih1/job_working_directory/000/4/working/cleaned_sequences/"*".dat" ] ; then cp "/tmp/tmpqrlh6ih1/job_working_directory/000/4/working/cleaned_sequences/"*".dat" "/tmp/tmpqrlh6ih1/job_working_directory/000/4/outputs/dataset_41da1090-710e-4c25-9a3d-97472671c387.dat" ; fi; +if [ -f "/tmp/tmpqrlh6ih1/job_working_directory/000/4/working/fcs_adaptor.log" ] ; then cp "/tmp/tmpqrlh6ih1/job_working_directory/000/4/working/fcs_adaptor.log" "/tmp/tmpqrlh6ih1/job_working_directory/000/4/outputs/dataset_5c65272e-4fbd-4386-af7d-d8cbdd90242a.dat" ; fi; +if [ -f "/tmp/tmpqrlh6ih1/job_working_directory/000/4/working/validate_fasta.txt" ] ; then cp "/tmp/tmpqrlh6ih1/job_working_directory/000/4/working/validate_fasta.txt" "/tmp/tmpqrlh6ih1/job_working_directory/000/4/outputs/dataset_92e5dc26-302e-4dbd-bd15-8050babfdff4.dat" ; fi; cd '/tmp/tmpqrlh6ih1/job_working_directory/000/4'; +[ "$GALAXY_VIRTUAL_ENV" = "None" ] && GALAXY_VIRTUAL_ENV="$_GALAXY_VIRTUAL_ENV"; _galaxy_setup_environment True; python metadata/set.py; sh -c "exit $return_code" +galaxy.jobs.runners.local DEBUG 2024-02-23 14:38:35,474 [pN:main.1,p:78709,tN:LocalRunner.work_thread-0] (4) executing job script: /tmp/tmpqrlh6ih1/job_working_directory/000/4/galaxy_4.sh +uvicorn.access INFO 2024-02-23 14:38:37,597 [pN:main.1,p:78709,tN:MainThread] 127.0.0.1:40730 - "GET /api/entry_points?running=true HTTP/1.1" 200 +uvicorn.access INFO 2024-02-23 14:38:38,198 [pN:main.1,p:78709,tN:MainThread] 127.0.0.1:40730 - "GET /history/current_history_json?since=2024-02-23T19:38:34.000978 HTTP/1.1" 200 +uvicorn.access INFO 2024-02-23 14:38:38,234 [pN:main.1,p:78709,tN:MainThread] 127.0.0.1:40730 - "GET /api/histories/e94ef2b25ec88be9/contents?v=dev&limit=1000&q=update_time-ge&qv=2024-02-23T19:38:35.061Z&details=b35bb5a57277f2b7 HTTP/1.1" 200 +uvicorn.access INFO 2024-02-23 14:38:38,279 [pN:main.1,p:78709,tN:MainThread] 127.0.0.1:40730 - "GET /api/users/e94ef2b25ec88be9 HTTP/1.1" 200 +uvicorn.access INFO 2024-02-23 14:38:38,301 [pN:main.1,p:78709,tN:MainThread] 127.0.0.1:40740 - "GET /api/histories/e94ef2b25ec88be9/contents?v=dev&order=hid&offset=0&limit=100&q=deleted&qv=false&q=visible&qv=true HTTP/1.1" 200 +uvicorn.access INFO 2024-02-23 14:38:41,295 [pN:main.1,p:78709,tN:MainThread] 127.0.0.1:40750 - "GET /history/current_history_json?since=2024-02-23T19:38:35.000518 HTTP/1.1" 200 +uvicorn.access INFO 2024-02-23 14:38:44,323 [pN:main.1,p:78709,tN:MainThread] 127.0.0.1:40762 - "GET /history/current_history_json?since=2024-02-23T19:38:35.000518 HTTP/1.1" 200 +uvicorn.access INFO 2024-02-23 14:38:47,347 [pN:main.1,p:78709,tN:MainThread] 127.0.0.1:47208 - "GET /history/current_history_json?since=2024-02-23T19:38:35.000518 HTTP/1.1" 200 +uvicorn.access INFO 2024-02-23 14:38:47,597 [pN:main.1,p:78709,tN:MainThread] 127.0.0.1:47208 - "GET /api/entry_points?running=true HTTP/1.1" 200 +uvicorn.access INFO 2024-02-23 14:38:50,375 [pN:main.1,p:78709,tN:MainThread] 127.0.0.1:47224 - "GET /history/current_history_json?since=2024-02-23T19:38:35.000518 HTTP/1.1" 200 +uvicorn.access INFO 2024-02-23 14:38:53,406 [pN:main.1,p:78709,tN:MainThread] 127.0.0.1:47236 - "GET /history/current_history_json?since=2024-02-23T19:38:35.000518 HTTP/1.1" 200 +uvicorn.access INFO 2024-02-23 14:38:56,435 [pN:main.1,p:78709,tN:MainThread] 127.0.0.1:55260 - "GET /history/current_history_json?since=2024-02-23T19:38:35.000518 HTTP/1.1" 200 +uvicorn.access INFO 2024-02-23 14:38:57,596 [pN:main.1,p:78709,tN:MainThread] 127.0.0.1:55260 - "GET /api/entry_points?running=true HTTP/1.1" 200 +uvicorn.access INFO 2024-02-23 14:38:59,466 [pN:main.1,p:78709,tN:MainThread] 127.0.0.1:55260 - "GET /history/current_history_json?since=2024-02-23T19:38:35.000518 HTTP/1.1" 200 +uvicorn.access INFO 2024-02-23 14:39:02,494 [pN:main.1,p:78709,tN:MainThread] 127.0.0.1:55264 - "GET /history/current_history_json?since=2024-02-23T19:38:35.000518 HTTP/1.1" 200 +uvicorn.access INFO 2024-02-23 14:39:05,526 [pN:main.1,p:78709,tN:MainThread] 127.0.0.1:55266 - "GET /history/current_history_json?since=2024-02-23T19:38:35.000518 HTTP/1.1" 200 +uvicorn.access INFO 2024-02-23 14:39:07,597 [pN:main.1,p:78709,tN:MainThread] 127.0.0.1:37544 - "GET /api/entry_points?running=true HTTP/1.1" 200 +uvicorn.access INFO 2024-02-23 14:39:08,555 [pN:main.1,p:78709,tN:MainThread] 127.0.0.1:37544 - "GET /history/current_history_json?since=2024-02-23T19:38:35.000518 HTTP/1.1" 200 +uvicorn.access INFO 2024-02-23 14:39:11,592 [pN:main.1,p:78709,tN:MainThread] 127.0.0.1:37560 - "GET /history/current_history_json?since=2024-02-23T19:38:35.000518 HTTP/1.1" 200 +uvicorn.access INFO 2024-02-23 14:39:14,624 [pN:main.1,p:78709,tN:MainThread] 127.0.0.1:37564 - "GET /history/current_history_json?since=2024-02-23T19:38:35.000518 HTTP/1.1" 200 +galaxy.jobs.runners.util.process_groups DEBUG 2024-02-23 14:39:15,076 [pN:main.1,p:78709,tN:LocalRunner.work_thread-2] check_pg(): No process found in process group 79120 +galaxy.jobs.runners.local DEBUG 2024-02-23 14:39:15,077 [pN:main.1,p:78709,tN:LocalRunner.work_thread-2] execution finished: /tmp/tmpqrlh6ih1/job_working_directory/000/3/galaxy_3.sh +galaxy.jobs DEBUG 2024-02-23 14:39:15,102 [pN:main.1,p:78709,tN:LocalRunner.work_thread-2] finish(): Moved /tmp/tmpqrlh6ih1/job_working_directory/000/3/outputs/dataset_baab9cb3-daf7-4634-b244-35ef4dfc423e.dat to /tmp/tmpqrlh6ih1/files/b/a/a/dataset_baab9cb3-daf7-4634-b244-35ef4dfc423e.dat +galaxy.jobs DEBUG 2024-02-23 14:39:15,102 [pN:main.1,p:78709,tN:LocalRunner.work_thread-2] finish(): Moved /tmp/tmpqrlh6ih1/job_working_directory/000/3/outputs/dataset_6151fe42-edab-4c01-b97a-3428cd1f28b4.dat to /tmp/tmpqrlh6ih1/files/6/1/5/dataset_6151fe42-edab-4c01-b97a-3428cd1f28b4.dat +galaxy.model.metadata DEBUG 2024-02-23 14:39:15,113 [pN:main.1,p:78709,tN:LocalRunner.work_thread-2] loading metadata from file for: HistoryDatasetAssociation 3 +galaxy.model.metadata DEBUG 2024-02-23 14:39:15,119 [pN:main.1,p:78709,tN:LocalRunner.work_thread-2] loading metadata from file for: HistoryDatasetAssociation 4 +galaxy.jobs DEBUG 2024-02-23 14:39:15,151 [pN:main.1,p:78709,tN:LocalRunner.work_thread-2] job_wrapper.finish for job 3 executed (54.675 ms) +uvicorn.access INFO 2024-02-23 14:39:17,599 [pN:main.1,p:78709,tN:MainThread] 127.0.0.1:46768 - "GET /api/entry_points?running=true HTTP/1.1" 200 +uvicorn.access INFO 2024-02-23 14:39:17,658 [pN:main.1,p:78709,tN:MainThread] 127.0.0.1:46768 - "GET /history/current_history_json?since=2024-02-23T19:38:35.000518 HTTP/1.1" 200 +uvicorn.access INFO 2024-02-23 14:39:17,696 [pN:main.1,p:78709,tN:MainThread] 127.0.0.1:46768 - "GET /api/histories/e94ef2b25ec88be9/contents?v=dev&limit=1000&q=update_time-ge&qv=2024-02-23T19:38:38.206Z HTTP/1.1" 200 +uvicorn.access INFO 2024-02-23 14:39:17,760 [pN:main.1,p:78709,tN:MainThread] 127.0.0.1:46768 - "GET /api/users/e94ef2b25ec88be9 HTTP/1.1" 200 +uvicorn.access INFO 2024-02-23 14:39:17,793 [pN:main.1,p:78709,tN:MainThread] 127.0.0.1:46772 - "GET /api/histories/e94ef2b25ec88be9/contents?v=dev&order=hid&offset=0&limit=100&q=deleted&qv=false&q=visible&qv=true HTTP/1.1" 200 +uvicorn.access INFO 2024-02-23 14:39:20,763 [pN:main.1,p:78709,tN:MainThread] 127.0.0.1:46780 - "GET /history/current_history_json?since=2024-02-23T19:39:15.000128 HTTP/1.1" 200 +uvicorn.access INFO 2024-02-23 14:39:22,402 [pN:main.1,p:78709,tN:MainThread] 127.0.0.1:46780 - "GET /api/datasets/b35bb5a57277f2b7?view=detailed HTTP/1.1" 200 +uvicorn.access INFO 2024-02-23 14:39:23,795 [pN:main.1,p:78709,tN:MainThread] 127.0.0.1:46780 - "GET /history/current_history_json?since=2024-02-23T19:39:15.000128 HTTP/1.1" 200 +uvicorn.access INFO 2024-02-23 14:39:26,829 [pN:main.1,p:78709,tN:MainThread] 127.0.0.1:58672 - "GET /history/current_history_json?since=2024-02-23T19:39:15.000128 HTTP/1.1" 200 +uvicorn.access INFO 2024-02-23 14:39:27,597 [pN:main.1,p:78709,tN:MainThread] 127.0.0.1:58672 - "GET /api/entry_points?running=true HTTP/1.1" 200 +galaxy.jobs.runners.util.process_groups DEBUG 2024-02-23 14:39:28,194 [pN:main.1,p:78709,tN:LocalRunner.work_thread-0] check_pg(): No process found in process group 79227 +galaxy.jobs.runners.local DEBUG 2024-02-23 14:39:28,195 [pN:main.1,p:78709,tN:LocalRunner.work_thread-0] execution finished: /tmp/tmpqrlh6ih1/job_working_directory/000/4/galaxy_4.sh +galaxy.jobs DEBUG 2024-02-23 14:39:28,221 [pN:main.1,p:78709,tN:LocalRunner.work_thread-0] finish(): Moved /tmp/tmpqrlh6ih1/job_working_directory/000/4/outputs/dataset_41844168-8b86-45ce-a8b8-c8552139307c.dat to /tmp/tmpqrlh6ih1/files/4/1/8/dataset_41844168-8b86-45ce-a8b8-c8552139307c.dat +galaxy.jobs DEBUG 2024-02-23 14:39:28,221 [pN:main.1,p:78709,tN:LocalRunner.work_thread-0] finish(): Moved /tmp/tmpqrlh6ih1/job_working_directory/000/4/outputs/dataset_41da1090-710e-4c25-9a3d-97472671c387.dat to /tmp/tmpqrlh6ih1/files/4/1/d/dataset_41da1090-710e-4c25-9a3d-97472671c387.dat +galaxy.jobs DEBUG 2024-02-23 14:39:28,221 [pN:main.1,p:78709,tN:LocalRunner.work_thread-0] finish(): Moved /tmp/tmpqrlh6ih1/job_working_directory/000/4/outputs/dataset_5c65272e-4fbd-4386-af7d-d8cbdd90242a.dat to /tmp/tmpqrlh6ih1/files/5/c/6/dataset_5c65272e-4fbd-4386-af7d-d8cbdd90242a.dat +galaxy.jobs DEBUG 2024-02-23 14:39:28,221 [pN:main.1,p:78709,tN:LocalRunner.work_thread-0] finish(): Moved /tmp/tmpqrlh6ih1/job_working_directory/000/4/outputs/dataset_92e5dc26-302e-4dbd-bd15-8050babfdff4.dat to /tmp/tmpqrlh6ih1/files/9/2/e/dataset_92e5dc26-302e-4dbd-bd15-8050babfdff4.dat +galaxy.model.metadata DEBUG 2024-02-23 14:39:28,232 [pN:main.1,p:78709,tN:LocalRunner.work_thread-0] loading metadata from file for: HistoryDatasetAssociation 5 +galaxy.model.metadata DEBUG 2024-02-23 14:39:28,236 [pN:main.1,p:78709,tN:LocalRunner.work_thread-0] loading metadata from file for: HistoryDatasetAssociation 6 +galaxy.model.metadata DEBUG 2024-02-23 14:39:28,239 [pN:main.1,p:78709,tN:LocalRunner.work_thread-0] loading metadata from file for: HistoryDatasetAssociation 7 +galaxy.model.metadata DEBUG 2024-02-23 14:39:28,263 [pN:main.1,p:78709,tN:LocalRunner.work_thread-0] loading metadata from file for: HistoryDatasetAssociation 8 +galaxy.jobs DEBUG 2024-02-23 14:39:28,325 [pN:main.1,p:78709,tN:LocalRunner.work_thread-0] job_wrapper.finish for job 4 executed (110.502 ms) +uvicorn.access INFO 2024-02-23 14:39:29,867 [pN:main.1,p:78709,tN:MainThread] 127.0.0.1:58686 - "GET /history/current_history_json?since=2024-02-23T19:39:15.000128 HTTP/1.1" 200 +uvicorn.access INFO 2024-02-23 14:39:29,913 [pN:main.1,p:78709,tN:MainThread] 127.0.0.1:58686 - "GET /api/histories/e94ef2b25ec88be9/contents?v=dev&limit=1000&q=update_time-ge&qv=2024-02-23T19:39:17.665Z&details=b35bb5a57277f2b7 HTTP/1.1" 200 +uvicorn.access INFO 2024-02-23 14:39:29,971 [pN:main.1,p:78709,tN:MainThread] 127.0.0.1:58686 - "GET /api/users/e94ef2b25ec88be9 HTTP/1.1" 200 +uvicorn.access INFO 2024-02-23 14:39:29,997 [pN:main.1,p:78709,tN:MainThread] 127.0.0.1:58700 - "GET /api/histories/e94ef2b25ec88be9/contents?v=dev&order=hid&offset=0&limit=100&q=deleted&qv=false&q=visible&qv=true HTTP/1.1" 200 +uvicorn.access INFO 2024-02-23 14:39:31,162 [pN:main.1,p:78709,tN:MainThread] 127.0.0.1:58700 - "GET /datasets/b35bb5a57277f2b7/display/?preview=True HTTP/1.1" 200 +uvicorn.access INFO 2024-02-23 14:39:31,188 [pN:main.1,p:78709,tN:MainThread] 127.0.0.1:58700 - "GET /static/dist/generic.bundled.js?v=1707855697000 HTTP/1.1" 200 +uvicorn.access INFO 2024-02-23 14:39:32,982 [pN:main.1,p:78709,tN:MainThread] 127.0.0.1:58700 - "GET /history/current_history_json?since=2024-02-23T19:39:28.000303 HTTP/1.1" 200 +uvicorn.access INFO 2024-02-23 14:39:36,015 [pN:main.1,p:78709,tN:MainThread] 127.0.0.1:44964 - "GET /history/current_history_json?since=2024-02-23T19:39:28.000303 HTTP/1.1" 200 +uvicorn.access INFO 2024-02-23 14:39:37,599 [pN:main.1,p:78709,tN:MainThread] 127.0.0.1:44964 - "GET /api/entry_points?running=true HTTP/1.1" 200 +uvicorn.access INFO 2024-02-23 14:39:39,044 [pN:main.1,p:78709,tN:MainThread] 127.0.0.1:44964 - "GET /history/current_history_json?since=2024-02-23T19:39:28.000303 HTTP/1.1" 200 +uvicorn.access INFO 2024-02-23 14:39:41,064 [pN:main.1,p:78709,tN:MainThread] 127.0.0.1:44964 - "GET /datasets/d6674a497e11acb0/display/?preview=True HTTP/1.1" 200 +uvicorn.access INFO 2024-02-23 14:39:42,071 [pN:main.1,p:78709,tN:MainThread] 127.0.0.1:44964 - "GET /history/current_history_json?since=2024-02-23T19:39:28.000303 HTTP/1.1" 200 +uvicorn.access INFO 2024-02-23 14:39:45,103 [pN:main.1,p:78709,tN:MainThread] 127.0.0.1:44972 - "GET /history/current_history_json?since=2024-02-23T19:39:28.000303 HTTP/1.1" 200 +uvicorn.access INFO 2024-02-23 14:39:47,604 [pN:main.1,p:78709,tN:MainThread] 127.0.0.1:45866 - "GET /api/entry_points?running=true HTTP/1.1" 200 +uvicorn.access INFO 2024-02-23 14:39:48,131 [pN:main.1,p:78709,tN:MainThread] 127.0.0.1:45866 - "GET /history/current_history_json?since=2024-02-23T19:39:28.000303 HTTP/1.1" 200 +uvicorn.access INFO 2024-02-23 14:39:51,163 [pN:main.1,p:78709,tN:MainThread] 127.0.0.1:45876 - "GET /history/current_history_json?since=2024-02-23T19:39:28.000303 HTTP/1.1" 200 +uvicorn.access INFO 2024-02-23 14:39:53,838 [pN:main.1,p:78709,tN:MainThread] 127.0.0.1:45888 - "GET /api/datasets/b35bb5a57277f2b7?view=detailed HTTP/1.1" 200 +/scratch/rico/galaxy/lib/galaxy/model/__init__.py:494: SAWarning: Dialect sqlite+pysqlite does *not* support Decimal objects natively, and SQLAlchemy must convert from floating point - rounding errors and other issues may occur. Please consider storing Decimal numbers as strings or integers on this platform for lossless storage. + return self.text_metrics + self.numeric_metrics +uvicorn.access INFO 2024-02-23 14:39:53,877 [pN:main.1,p:78709,tN:MainThread] 127.0.0.1:45888 - "GET /api/jobs/b35bb5a57277f2b7?full=True HTTP/1.1" 200 +uvicorn.access INFO 2024-02-23 14:39:54,036 [pN:main.1,p:78709,tN:MainThread] 127.0.0.1:45902 - "GET /api/datasets/b35bb5a57277f2b7/storage HTTP/1.1" 200 +uvicorn.access INFO 2024-02-23 14:39:54,048 [pN:main.1,p:78709,tN:MainThread] 127.0.0.1:45912 - "GET /api/datasets/b35bb5a57277f2b7/inheritance_chain HTTP/1.1" 200 +uvicorn.access INFO 2024-02-23 14:39:54,095 [pN:main.1,p:78709,tN:MainThread] 127.0.0.1:45940 - "GET /api/jobs/b35bb5a57277f2b7/destination_params HTTP/1.1" 200 +uvicorn.access INFO 2024-02-23 14:39:54,110 [pN:main.1,p:78709,tN:MainThread] 127.0.0.1:45924 - "GET /api/datasets/b35bb5a57277f2b7/metrics?hda_ldda=hda HTTP/1.1" 200 +uvicorn.access INFO 2024-02-23 14:39:54,133 [pN:main.1,p:78709,tN:MainThread] 127.0.0.1:45888 - "GET /api/datasets/b35bb5a57277f2b7/parameters_display?hda_ldda=hda HTTP/1.1" 200 +uvicorn.access INFO 2024-02-23 14:39:54,188 [pN:main.1,p:78709,tN:MainThread] 127.0.0.1:45912 - "GET /api/users/current/usage/__null__ HTTP/1.1" 200 +uvicorn.access INFO 2024-02-23 14:39:54,204 [pN:main.1,p:78709,tN:MainThread] 127.0.0.1:45952 - "GET /api/datasets/b35bb5a57277f2b7?view=detailed HTTP/1.1" 200 +uvicorn.access INFO 2024-02-23 14:39:54,229 [pN:main.1,p:78709,tN:MainThread] 127.0.0.1:45940 - "GET /history/current_history_json?since=2024-02-23T19:39:28.000303 HTTP/1.1" 200 +uvicorn.access INFO 2024-02-23 14:39:54,268 [pN:main.1,p:78709,tN:MainThread] 127.0.0.1:45902 - "GET /api/jobs/b35bb5a57277f2b7?full=True HTTP/1.1" 200 +uvicorn.access INFO 2024-02-23 14:39:54,315 [pN:main.1,p:78709,tN:MainThread] 127.0.0.1:45888 - "GET /api/datasets/a8266ce1f5b52ae6?view=detailed HTTP/1.1" 200 +uvicorn.access INFO 2024-02-23 14:39:54,324 [pN:main.1,p:78709,tN:MainThread] 127.0.0.1:45912 - "GET /api/configuration/decode/b35bb5a57277f2b7 HTTP/1.1" 200 +uvicorn.access INFO 2024-02-23 14:39:54,351 [pN:main.1,p:78709,tN:MainThread] 127.0.0.1:45940 - "GET /api/configuration/decode/e94ef2b25ec88be9 HTTP/1.1" 200 +uvicorn.access INFO 2024-02-23 14:39:54,358 [pN:main.1,p:78709,tN:MainThread] 127.0.0.1:45924 - "GET /api/datasets/d6674a497e11acb0?view=detailed HTTP/1.1" 200 +uvicorn.access INFO 2024-02-23 14:39:54,378 [pN:main.1,p:78709,tN:MainThread] 127.0.0.1:45952 - "GET /api/datasets/b35bb5a57277f2b7?view=detailed HTTP/1.1" 200 +uvicorn.access INFO 2024-02-23 14:39:54,381 [pN:main.1,p:78709,tN:MainThread] 127.0.0.1:45912 - "GET /api/configuration/decode/b35bb5a57277f2b7 HTTP/1.1" 200 +uvicorn.access INFO 2024-02-23 14:39:57,260 [pN:main.1,p:78709,tN:MainThread] 127.0.0.1:57798 - "GET /history/current_history_json?since=2024-02-23T19:39:28.000303 HTTP/1.1" 200 +uvicorn.access INFO 2024-02-23 14:39:57,600 [pN:main.1,p:78709,tN:MainThread] 127.0.0.1:57798 - "GET /api/entry_points?running=true HTTP/1.1" 200 +uvicorn.access INFO 2024-02-23 14:40:00,295 [pN:main.1,p:78709,tN:MainThread] 127.0.0.1:57804 - "GET /history/current_history_json?since=2024-02-23T19:39:28.000303 HTTP/1.1" 200 +uvicorn.access INFO 2024-02-23 14:40:03,324 [pN:main.1,p:78709,tN:MainThread] 127.0.0.1:57812 - "GET /history/current_history_json?since=2024-02-23T19:39:28.000303 HTTP/1.1" 200 +uvicorn.access INFO 2024-02-23 14:40:06,356 [pN:main.1,p:78709,tN:MainThread] 127.0.0.1:57264 - "GET /history/current_history_json?since=2024-02-23T19:39:28.000303 HTTP/1.1" 200 +uvicorn.access INFO 2024-02-23 14:40:07,601 [pN:main.1,p:78709,tN:MainThread] 127.0.0.1:57264 - "GET /api/entry_points?running=true HTTP/1.1" 200 +uvicorn.access INFO 2024-02-23 14:40:09,387 [pN:main.1,p:78709,tN:MainThread] 127.0.0.1:57264 - "GET /history/current_history_json?since=2024-02-23T19:39:28.000303 HTTP/1.1" 200 +uvicorn.access INFO 2024-02-23 14:40:10,214 [pN:main.1,p:78709,tN:MainThread] 127.0.0.1:57264 - "GET /api/datasets/d6674a497e11acb0?view=detailed HTTP/1.1" 200 +uvicorn.access INFO 2024-02-23 14:40:11,651 [pN:main.1,p:78709,tN:MainThread] 127.0.0.1:57264 - "GET /api/datasets/d6674a497e11acb0?view=detailed HTTP/1.1" 200 +uvicorn.access INFO 2024-02-23 14:40:11,722 [pN:main.1,p:78709,tN:MainThread] 127.0.0.1:57264 - "GET /api/jobs/b35bb5a57277f2b7?full=True HTTP/1.1" 200 +uvicorn.access INFO 2024-02-23 14:40:11,808 [pN:main.1,p:78709,tN:MainThread] 127.0.0.1:57286 - "GET /api/datasets/d6674a497e11acb0?view=detailed HTTP/1.1" 200 +uvicorn.access INFO 2024-02-23 14:40:11,849 [pN:main.1,p:78709,tN:MainThread] 127.0.0.1:57276 - "GET /api/datasets/d6674a497e11acb0/inheritance_chain HTTP/1.1" 200 +uvicorn.access INFO 2024-02-23 14:40:11,873 [pN:main.1,p:78709,tN:MainThread] 127.0.0.1:57268 - "GET /api/datasets/d6674a497e11acb0/storage HTTP/1.1" 200 +uvicorn.access INFO 2024-02-23 14:40:11,906 [pN:main.1,p:78709,tN:MainThread] 127.0.0.1:57302 - "GET /api/jobs/b35bb5a57277f2b7?full=True HTTP/1.1" 200 +uvicorn.access INFO 2024-02-23 14:40:11,921 [pN:main.1,p:78709,tN:MainThread] 127.0.0.1:57284 - "GET /api/datasets/d6674a497e11acb0/metrics?hda_ldda=hda HTTP/1.1" 200 +uvicorn.access INFO 2024-02-23 14:40:11,930 [pN:main.1,p:78709,tN:MainThread] 127.0.0.1:57286 - "GET /api/configuration/decode/d6674a497e11acb0 HTTP/1.1" 200 +uvicorn.access INFO 2024-02-23 14:40:11,934 [pN:main.1,p:78709,tN:MainThread] 127.0.0.1:57264 - "GET /api/datasets/d6674a497e11acb0/parameters_display?hda_ldda=hda HTTP/1.1" 200 +uvicorn.access INFO 2024-02-23 14:40:11,949 [pN:main.1,p:78709,tN:MainThread] 127.0.0.1:57276 - "GET /api/configuration/decode/e94ef2b25ec88be9 HTTP/1.1" 200 +uvicorn.access INFO 2024-02-23 14:40:11,985 [pN:main.1,p:78709,tN:MainThread] 127.0.0.1:57268 - "GET /api/users/current/usage/__null__ HTTP/1.1" 200 +uvicorn.access INFO 2024-02-23 14:40:11,986 [pN:main.1,p:78709,tN:MainThread] 127.0.0.1:57302 - "GET /api/configuration/decode/b35bb5a57277f2b7 HTTP/1.1" 200 +uvicorn.access INFO 2024-02-23 14:40:12,024 [pN:main.1,p:78709,tN:MainThread] 127.0.0.1:57284 - "GET /api/datasets/d6674a497e11acb0?view=detailed HTTP/1.1" 200 +uvicorn.access INFO 2024-02-23 14:40:12,056 [pN:main.1,p:78709,tN:MainThread] 127.0.0.1:57286 - "GET /api/datasets/b35bb5a57277f2b7?view=detailed HTTP/1.1" 200 +uvicorn.access INFO 2024-02-23 14:40:12,068 [pN:main.1,p:78709,tN:MainThread] 127.0.0.1:57264 - "GET /api/datasets/a8266ce1f5b52ae6?view=detailed HTTP/1.1" 200 +uvicorn.access INFO 2024-02-23 14:40:12,415 [pN:main.1,p:78709,tN:MainThread] 127.0.0.1:57264 - "GET /history/current_history_json?since=2024-02-23T19:39:28.000303 HTTP/1.1" 200 +uvicorn.access INFO 2024-02-23 14:40:15,446 [pN:main.1,p:78709,tN:MainThread] 127.0.0.1:57310 - "GET /history/current_history_json?since=2024-02-23T19:39:28.000303 HTTP/1.1" 200 +uvicorn.access INFO 2024-02-23 14:40:17,604 [pN:main.1,p:78709,tN:MainThread] 127.0.0.1:32830 - "GET /api/entry_points?running=true HTTP/1.1" 200 +uvicorn.access INFO 2024-02-23 14:40:18,476 [pN:main.1,p:78709,tN:MainThread] 127.0.0.1:32830 - "GET /history/current_history_json?since=2024-02-23T19:39:28.000303 HTTP/1.1" 200 +uvicorn.access INFO 2024-02-23 14:40:21,506 [pN:main.1,p:78709,tN:MainThread] 127.0.0.1:32842 - "GET /history/current_history_json?since=2024-02-23T19:39:28.000303 HTTP/1.1" 200 +uvicorn.access INFO 2024-02-23 14:40:24,543 [pN:main.1,p:78709,tN:MainThread] 127.0.0.1:32854 - "GET /history/current_history_json?since=2024-02-23T19:39:28.000303 HTTP/1.1" 200 +uvicorn.access INFO 2024-02-23 14:40:27,578 [pN:main.1,p:78709,tN:MainThread] 127.0.0.1:53704 - "GET /history/current_history_json?since=2024-02-23T19:39:28.000303 HTTP/1.1" 200 +uvicorn.access INFO 2024-02-23 14:40:27,607 [pN:main.1,p:78709,tN:MainThread] 127.0.0.1:53704 - "GET /api/entry_points?running=true HTTP/1.1" 200 +uvicorn.access INFO 2024-02-23 14:40:30,608 [pN:main.1,p:78709,tN:MainThread] 127.0.0.1:53716 - "GET /history/current_history_json?since=2024-02-23T19:39:28.000303 HTTP/1.1" 200 +uvicorn.access INFO 2024-02-23 14:40:31,252 [pN:main.1,p:78709,tN:MainThread] 127.0.0.1:53716 - "GET /api/tools/ncbi_fcs_adaptor/build?version=latest&tool_version=latest HTTP/1.1" 200 +uvicorn.access INFO 2024-02-23 14:40:31,362 [pN:main.1,p:78709,tN:MainThread] 127.0.0.1:53716 - "POST /api/tools/ncbi_fcs_adaptor/build HTTP/1.1" 200 +uvicorn.access INFO 2024-02-23 14:40:33,640 [pN:main.1,p:78709,tN:MainThread] 127.0.0.1:53728 - "GET /history/current_history_json?since=2024-02-23T19:39:28.000303 HTTP/1.1" 200 +uvicorn.access INFO 2024-02-23 14:40:36,669 [pN:main.1,p:78709,tN:MainThread] 127.0.0.1:59536 - "GET /history/current_history_json?since=2024-02-23T19:39:28.000303 HTTP/1.1" 200 +uvicorn.access INFO 2024-02-23 14:40:37,609 [pN:main.1,p:78709,tN:MainThread] 127.0.0.1:59536 - "GET /api/entry_points?running=true HTTP/1.1" 200 +uvicorn.access INFO 2024-02-23 14:40:37,724 [pN:main.1,p:78709,tN:MainThread] 127.0.0.1:59536 - "POST /api/tools/ncbi_fcs_adaptor/build HTTP/1.1" 200 +uvicorn.access INFO 2024-02-23 14:40:39,699 [pN:main.1,p:78709,tN:MainThread] 127.0.0.1:59536 - "GET /history/current_history_json?since=2024-02-23T19:39:28.000303 HTTP/1.1" 200 +uvicorn.access INFO 2024-02-23 14:40:42,730 [pN:main.1,p:78709,tN:MainThread] 127.0.0.1:59542 - "GET /history/current_history_json?since=2024-02-23T19:39:28.000303 HTTP/1.1" 200 +uvicorn.access INFO 2024-02-23 14:40:45,762 [pN:main.1,p:78709,tN:MainThread] 127.0.0.1:59192 - "GET /history/current_history_json?since=2024-02-23T19:39:28.000303 HTTP/1.1" 200 +uvicorn.access INFO 2024-02-23 14:40:47,611 [pN:main.1,p:78709,tN:MainThread] 127.0.0.1:59192 - "GET /api/entry_points?running=true HTTP/1.1" 200 +uvicorn.access INFO 2024-02-23 14:40:48,791 [pN:main.1,p:78709,tN:MainThread] 127.0.0.1:59192 - "GET /history/current_history_json?since=2024-02-23T19:39:28.000303 HTTP/1.1" 200 +uvicorn.access INFO 2024-02-23 14:40:51,823 [pN:main.1,p:78709,tN:MainThread] 127.0.0.1:59208 - "GET /history/current_history_json?since=2024-02-23T19:39:28.000303 HTTP/1.1" 200 +uvicorn.access INFO 2024-02-23 14:40:54,824 [pN:main.1,p:78709,tN:MainThread] 127.0.0.1:59214 - "GET /datasets/4aa1fa05efd4b363/display/?preview=True HTTP/1.1" 200 +uvicorn.access INFO 2024-02-23 14:40:54,850 [pN:main.1,p:78709,tN:MainThread] 127.0.0.1:59214 - "GET /history/current_history_json?since=2024-02-23T19:39:28.000303 HTTP/1.1" 200 +uvicorn.access INFO 2024-02-23 14:40:57,213 [pN:main.1,p:78709,tN:MainThread] 127.0.0.1:49028 - "GET /datasets/9d64888131bc67e9/display/?preview=True HTTP/1.1" 200 +uvicorn.access INFO 2024-02-23 14:40:57,732 [pN:main.1,p:78709,tN:MainThread] 127.0.0.1:49028 - "GET /api/entry_points?running=true HTTP/1.1" 200 +uvicorn.access INFO 2024-02-23 14:40:57,924 [pN:main.1,p:78709,tN:MainThread] 127.0.0.1:49028 - "GET /history/current_history_json?since=2024-02-23T19:39:28.000303 HTTP/1.1" 200 +uvicorn.access INFO 2024-02-23 14:41:00,329 [pN:main.1,p:78709,tN:MainThread] 127.0.0.1:49040 - "GET /datasets/e331579530f91b88/display/?preview=True HTTP/1.1" 200 +uvicorn.access INFO 2024-02-23 14:41:00,952 [pN:main.1,p:78709,tN:MainThread] 127.0.0.1:49040 - "GET /history/current_history_json?since=2024-02-23T19:39:28.000303 HTTP/1.1" 200 +uvicorn.access INFO 2024-02-23 14:41:03,981 [pN:main.1,p:78709,tN:MainThread] 127.0.0.1:49054 - "GET /history/current_history_json?since=2024-02-23T19:39:28.000303 HTTP/1.1" 200 +uvicorn.access INFO 2024-02-23 14:41:05,964 [pN:main.1,p:78709,tN:MainThread] 127.0.0.1:49054 - "GET /api/datasets/9a32e5e3a6abd4e7?view=detailed HTTP/1.1" 200 +uvicorn.access INFO 2024-02-23 14:41:07,016 [pN:main.1,p:78709,tN:MainThread] 127.0.0.1:49054 - "GET /history/current_history_json?since=2024-02-23T19:39:28.000303 HTTP/1.1" 200 +uvicorn.access INFO 2024-02-23 14:41:07,728 [pN:main.1,p:78709,tN:MainThread] 127.0.0.1:49054 - "GET /api/entry_points?running=true HTTP/1.1" 200 +uvicorn.access INFO 2024-02-23 14:41:08,614 [pN:main.1,p:78709,tN:MainThread] 127.0.0.1:49054 - "GET /datasets/9a32e5e3a6abd4e7/display/?preview=True HTTP/1.1" 200 +uvicorn.access INFO 2024-02-23 14:41:10,059 [pN:main.1,p:78709,tN:MainThread] 127.0.0.1:49054 - "GET /history/current_history_json?since=2024-02-23T19:39:28.000303 HTTP/1.1" 200 +uvicorn.access INFO 2024-02-23 14:41:11,938 [pN:main.1,p:78709,tN:MainThread] 127.0.0.1:49054 - "GET /api/datasets/9a32e5e3a6abd4e7?view=detailed HTTP/1.1" 200 +uvicorn.access INFO 2024-02-23 14:41:11,976 [pN:main.1,p:78709,tN:MainThread] 127.0.0.1:49054 - "GET /api/jobs/d6674a497e11acb0?full=True HTTP/1.1" 200 +uvicorn.access INFO 2024-02-23 14:41:12,059 [pN:main.1,p:78709,tN:MainThread] 127.0.0.1:49054 - "GET /api/datasets/9a32e5e3a6abd4e7/parameters_display?hda_ldda=hda HTTP/1.1" 200 +uvicorn.access INFO 2024-02-23 14:41:12,119 [pN:main.1,p:78709,tN:MainThread] 127.0.0.1:59504 - "GET /api/datasets/9a32e5e3a6abd4e7/metrics?hda_ldda=hda HTTP/1.1" 200 +uvicorn.access INFO 2024-02-23 14:41:12,132 [pN:main.1,p:78709,tN:MainThread] 127.0.0.1:59496 - "GET /api/datasets/9a32e5e3a6abd4e7/inheritance_chain HTTP/1.1" 200 +uvicorn.access INFO 2024-02-23 14:41:12,146 [pN:main.1,p:78709,tN:MainThread] 127.0.0.1:59492 - "GET /api/datasets/9a32e5e3a6abd4e7/storage HTTP/1.1" 200 +uvicorn.access INFO 2024-02-23 14:41:12,166 [pN:main.1,p:78709,tN:MainThread] 127.0.0.1:59514 - "GET /api/jobs/d6674a497e11acb0/destination_params HTTP/1.1" 200 +uvicorn.access INFO 2024-02-23 14:41:12,244 [pN:main.1,p:78709,tN:MainThread] 127.0.0.1:59516 - "GET /api/datasets/9a32e5e3a6abd4e7?view=detailed HTTP/1.1" 200 +uvicorn.access INFO 2024-02-23 14:41:12,269 [pN:main.1,p:78709,tN:MainThread] 127.0.0.1:49054 - "GET /api/jobs/d6674a497e11acb0?full=True HTTP/1.1" 200 +uvicorn.access INFO 2024-02-23 14:41:12,363 [pN:main.1,p:78709,tN:MainThread] 127.0.0.1:59504 - "GET /api/datasets/a8266ce1f5b52ae6?view=detailed HTTP/1.1" 200 +uvicorn.access INFO 2024-02-23 14:41:12,389 [pN:main.1,p:78709,tN:MainThread] 127.0.0.1:59516 - "GET /api/users/current/usage/__null__ HTTP/1.1" 200 +uvicorn.access INFO 2024-02-23 14:41:12,401 [pN:main.1,p:78709,tN:MainThread] 127.0.0.1:59496 - "GET /api/datasets/4aa1fa05efd4b363?view=detailed HTTP/1.1" 200 +uvicorn.access INFO 2024-02-23 14:41:12,418 [pN:main.1,p:78709,tN:MainThread] 127.0.0.1:59514 - "GET /api/datasets/e331579530f91b88?view=detailed HTTP/1.1" 200 +uvicorn.access INFO 2024-02-23 14:41:12,419 [pN:main.1,p:78709,tN:MainThread] 127.0.0.1:59492 - "GET /api/datasets/9d64888131bc67e9?view=detailed HTTP/1.1" 200 +uvicorn.access INFO 2024-02-23 14:41:12,465 [pN:main.1,p:78709,tN:MainThread] 127.0.0.1:49054 - "GET /api/datasets/9a32e5e3a6abd4e7?view=detailed HTTP/1.1" 200 +uvicorn.access INFO 2024-02-23 14:41:12,474 [pN:main.1,p:78709,tN:MainThread] 127.0.0.1:59504 - "GET /api/configuration/decode/9a32e5e3a6abd4e7 HTTP/1.1" 200 +uvicorn.access INFO 2024-02-23 14:41:12,483 [pN:main.1,p:78709,tN:MainThread] 127.0.0.1:59516 - "GET /api/configuration/decode/e94ef2b25ec88be9 HTTP/1.1" 200 +uvicorn.access INFO 2024-02-23 14:41:12,486 [pN:main.1,p:78709,tN:MainThread] 127.0.0.1:59496 - "GET /api/configuration/decode/d6674a497e11acb0 HTTP/1.1" 200 +uvicorn.access INFO 2024-02-23 14:41:13,090 [pN:main.1,p:78709,tN:MainThread] 127.0.0.1:59496 - "GET /history/current_history_json?since=2024-02-23T19:39:28.000303 HTTP/1.1" 200 +uvicorn.access INFO 2024-02-23 14:41:16,123 [pN:main.1,p:78709,tN:MainThread] 127.0.0.1:53300 - "GET /history/current_history_json?since=2024-02-23T19:39:28.000303 HTTP/1.1" 200 +uvicorn.access INFO 2024-02-23 14:41:17,732 [pN:main.1,p:78709,tN:MainThread] 127.0.0.1:53300 - "GET /api/entry_points?running=true HTTP/1.1" 200 +uvicorn.access INFO 2024-02-23 14:41:19,153 [pN:main.1,p:78709,tN:MainThread] 127.0.0.1:53300 - "GET /history/current_history_json?since=2024-02-23T19:39:28.000303 HTTP/1.1" 200 +uvicorn.access INFO 2024-02-23 14:41:19,907 [pN:main.1,p:78709,tN:MainThread] 127.0.0.1:53300 - "GET /datasets/9a32e5e3a6abd4e7/display/?preview=True HTTP/1.1" 200 +uvicorn.access INFO 2024-02-23 14:41:22,005 [pN:main.1,p:78709,tN:MainThread] 127.0.0.1:53304 - "GET /api/datasets/9a32e5e3a6abd4e7?view=detailed HTTP/1.1" 200 +uvicorn.access INFO 2024-02-23 14:41:22,037 [pN:main.1,p:78709,tN:MainThread] 127.0.0.1:53304 - "GET /api/jobs/d6674a497e11acb0?full=True HTTP/1.1" 200 +uvicorn.access INFO 2024-02-23 14:41:22,141 [pN:main.1,p:78709,tN:MainThread] 127.0.0.1:53304 - "GET /api/datasets/9a32e5e3a6abd4e7/parameters_display?hda_ldda=hda HTTP/1.1" 200 +uvicorn.access INFO 2024-02-23 14:41:22,162 [pN:main.1,p:78709,tN:MainThread] 127.0.0.1:53318 - "GET /api/datasets/9a32e5e3a6abd4e7/inheritance_chain HTTP/1.1" 200 +uvicorn.access INFO 2024-02-23 14:41:22,168 [pN:main.1,p:78709,tN:MainThread] 127.0.0.1:53306 - "GET /api/datasets/9a32e5e3a6abd4e7/storage HTTP/1.1" 200 +uvicorn.access INFO 2024-02-23 14:41:22,200 [pN:main.1,p:78709,tN:MainThread] 127.0.0.1:53332 - "GET /api/jobs/d6674a497e11acb0?full=True HTTP/1.1" 200 +uvicorn.access INFO 2024-02-23 14:41:22,233 [pN:main.1,p:78709,tN:MainThread] 127.0.0.1:53324 - "GET /api/datasets/9a32e5e3a6abd4e7?view=detailed HTTP/1.1" 200 +uvicorn.access INFO 2024-02-23 14:41:22,250 [pN:main.1,p:78709,tN:MainThread] 127.0.0.1:53332 - "GET /history/current_history_json?since=2024-02-23T19:39:28.000303 HTTP/1.1" 200 +uvicorn.access INFO 2024-02-23 14:41:22,324 [pN:main.1,p:78709,tN:MainThread] 127.0.0.1:53306 - "GET /api/datasets/e331579530f91b88?view=detailed HTTP/1.1" 200 +uvicorn.access INFO 2024-02-23 14:41:22,358 [pN:main.1,p:78709,tN:MainThread] 127.0.0.1:53324 - "GET /api/users/current/usage/__null__ HTTP/1.1" 200 +uvicorn.access INFO 2024-02-23 14:41:22,377 [pN:main.1,p:78709,tN:MainThread] 127.0.0.1:53332 - "GET /api/configuration/decode/d6674a497e11acb0 HTTP/1.1" 200 +uvicorn.access INFO 2024-02-23 14:41:22,397 [pN:main.1,p:78709,tN:MainThread] 127.0.0.1:53348 - "GET /api/datasets/4aa1fa05efd4b363?view=detailed HTTP/1.1" 200 +uvicorn.access INFO 2024-02-23 14:41:22,410 [pN:main.1,p:78709,tN:MainThread] 127.0.0.1:53318 - "GET /api/datasets/9d64888131bc67e9?view=detailed HTTP/1.1" 200 +uvicorn.access INFO 2024-02-23 14:41:22,424 [pN:main.1,p:78709,tN:MainThread] 127.0.0.1:53304 - "GET /api/datasets/a8266ce1f5b52ae6?view=detailed HTTP/1.1" 200 +uvicorn.access INFO 2024-02-23 14:41:22,456 [pN:main.1,p:78709,tN:MainThread] 127.0.0.1:53332 - "GET /api/configuration/decode/e94ef2b25ec88be9 HTTP/1.1" 200 +uvicorn.access INFO 2024-02-23 14:41:22,462 [pN:main.1,p:78709,tN:MainThread] 127.0.0.1:53324 - "GET /api/configuration/decode/9a32e5e3a6abd4e7 HTTP/1.1" 200 +uvicorn.access INFO 2024-02-23 14:41:22,468 [pN:main.1,p:78709,tN:MainThread] 127.0.0.1:53306 - "GET /api/datasets/9a32e5e3a6abd4e7?view=detailed HTTP/1.1" 200 +uvicorn.access INFO 2024-02-23 14:41:25,288 [pN:main.1,p:78709,tN:MainThread] 127.0.0.1:53356 - "GET /history/current_history_json?since=2024-02-23T19:39:28.000303 HTTP/1.1" 200 +uvicorn.access INFO 2024-02-23 14:41:27,733 [pN:main.1,p:78709,tN:MainThread] 127.0.0.1:58944 - "GET /api/entry_points?running=true HTTP/1.1" 200 +uvicorn.access INFO 2024-02-23 14:41:28,315 [pN:main.1,p:78709,tN:MainThread] 127.0.0.1:58944 - "GET /history/current_history_json?since=2024-02-23T19:39:28.000303 HTTP/1.1" 200 +uvicorn.access INFO 2024-02-23 14:41:32,216 [pN:main.1,p:78709,tN:MainThread] 127.0.0.1:58948 - "GET /history/current_history_json?since=2024-02-23T19:39:28.000303 HTTP/1.1" 200 + +==> /tmp/tmpqrlh6ih1/gravity/log/celery-beat.log <== +[2024-02-23 14:41:34,178: DEBUG/MainProcess] beat: Synchronizing schedule... +[2024-02-23 14:41:34,179: INFO/MainProcess] Scheduler: Sending due task clean-object-store-caches (galaxy.clean_object_store_caches) +[2024-02-23 14:41:34,195: DEBUG/MainProcess] galaxy.clean_object_store_caches sent. id->f5e83b64-c60a-4621-bc5d-a6516ea91ec9 +[2024-02-23 14:41:34,196: DEBUG/MainProcess] beat: Waking up in 5.00 minutes. + +==> /tmp/tmpqrlh6ih1/gravity/log/celery.log <== +[2024-02-23 14:41:35,030: INFO/main] Task galaxy.clean_object_store_caches[f5e83b64-c60a-4621-bc5d-a6516ea91ec9] received +[2024-02-23 14:41:35,031: DEBUG/main] TaskPool: Apply <function fast_trace_task at 0x7f9f1756ed90> (args:('galaxy.clean_object_store_caches', 'f5e83b64-c60a-4621-bc5d-a6516ea91ec9', {'lang': 'py', 'task': 'galaxy.clean_object_store_caches', 'id': 'f5e83b64-c60a-4621-bc5d-a6516ea91ec9', 'shadow': None, 'eta': None, 'expires': None, 'group': None, 'group_index': None, 'retries': 0, 'timelimit': [None, None], 'root_id': 'f5e83b64-c60a-4621-bc5d-a6516ea91ec9', 'parent_id': None, 'argsrepr': '()', 'kwargsrepr': '{}', 'origin': 'gen78504@laila', 'ignore_result': False, 'properties': {'correlation_id': 'f5e83b64-c60a-4621-bc5d-a6516ea91ec9', 'reply_to': 'a834fe8d-fc9c-31a2-9791-be846a6fc4af', 'delivery_mode': 2, 'delivery_info': {'exchange': '', 'routing_key': 'galaxy.internal'}, 'priority': 0, 'body_encoding': 'base64', 'delivery_tag': '52a407fc-3529-4119-bd33-a501e38607aa'}, 'reply_to': 'a834fe8d-fc9c-31a2-9791-be846a6fc4af', 'correlation_id': 'f5e83b64-c60a-4621-bc5d-a6516ea91ec9', 'hostname': 'celery@laila', 'delivery_info': {'exchange': '', 'routing_key': 'galaxy.internal', 'priority': 0, 'redelivered': None},... kwargs:{}) +[2024-02-23 14:41:35,033: INFO/main] Successfully executed Celery task clean_object_store_caches to prune object store cache directories clean_object_store_caches to prune object store cache directories (0.532 ms) +[2024-02-23 14:41:35,034: INFO/main] Task galaxy.clean_object_store_caches[f5e83b64-c60a-4621-bc5d-a6516ea91ec9] succeeded in 0.0018830089829862118s: None + +==> /tmp/tmpqrlh6ih1/gravity/log/gunicorn.log <== +uvicorn.access INFO 2024-02-23 14:41:38,212 [pN:main.1,p:78709,tN:MainThread] 127.0.0.1:54156 - "GET /api/entry_points?running=true HTTP/1.1" 200 +uvicorn.access INFO 2024-02-23 14:41:48,216 [pN:main.1,p:78709,tN:MainThread] 127.0.0.1:53112 - "GET /api/entry_points?running=true HTTP/1.1" 200 +uvicorn.access INFO 2024-02-23 14:41:59,218 [pN:main.1,p:78709,tN:MainThread] 127.0.0.1:47208 - "GET /api/entry_points?running=true HTTP/1.1" 200 +uvicorn.access INFO 2024-02-23 14:42:07,092 [pN:main.1,p:78709,tN:MainThread] 127.0.0.1:38240 - "GET /history/current_history_json?since=2024-02-23T19:39:28.000303 HTTP/1.1" 200 +uvicorn.access INFO 2024-02-23 14:42:09,213 [pN:main.1,p:78709,tN:MainThread] 127.0.0.1:38256 - "GET /api/entry_points?running=true HTTP/1.1" 200 +uvicorn.access INFO 2024-02-23 14:42:10,121 [pN:main.1,p:78709,tN:MainThread] 127.0.0.1:38256 - "GET /history/current_history_json?since=2024-02-23T19:39:28.000303 HTTP/1.1" 200 +uvicorn.access INFO 2024-02-23 14:42:11,819 [pN:main.1,p:78709,tN:MainThread] 127.0.0.1:38256 - "GET /api/tools/ncbi_fcs_adaptor/build?version=latest&tool_version=latest HTTP/1.1" 200 +uvicorn.access INFO 2024-02-23 14:42:11,910 [pN:main.1,p:78709,tN:MainThread] 127.0.0.1:38256 - "POST /api/tools/ncbi_fcs_adaptor/build HTTP/1.1" 200 +uvicorn.access INFO 2024-02-23 14:42:13,151 [pN:main.1,p:78709,tN:MainThread] 127.0.0.1:38256 - "GET /history/current_history_json?since=2024-02-23T19:39:28.000303 HTTP/1.1" 200 +uvicorn.access INFO 2024-02-23 14:42:16,179 [pN:main.1,p:78709,tN:MainThread] 127.0.0.1:40396 - "GET /history/current_history_json?since=2024-02-23T19:39:28.000303 HTTP/1.1" 200 +uvicorn.access INFO 2024-02-23 14:42:19,211 [pN:main.1,p:78709,tN:MainThread] 127.0.0.1:40404 - "GET /history/current_history_json?since=2024-02-23T19:39:28.000303 HTTP/1.1" 200 +uvicorn.access INFO 2024-02-23 14:42:19,221 [pN:main.1,p:78709,tN:MainThread] 127.0.0.1:40416 - "GET /api/entry_points?running=true HTTP/1.1" 200 +uvicorn.access INFO 2024-02-23 14:42:21,206 [pN:main.1,p:78709,tN:MainThread] 127.0.0.1:40416 - "POST /api/tools/ncbi_fcs_adaptor/build HTTP/1.1" 200 +uvicorn.access INFO 2024-02-23 14:42:22,239 [pN:main.1,p:78709,tN:MainThread] 127.0.0.1:40416 - "GET /history/current_history_json?since=2024-02-23T19:39:28.000303 HTTP/1.1" 200 +uvicorn.access INFO 2024-02-23 14:42:25,268 [pN:main.1,p:78709,tN:MainThread] 127.0.0.1:40428 - "GET /history/current_history_json?since=2024-02-23T19:39:28.000303 HTTP/1.1" 200 +uvicorn.access INFO 2024-02-23 14:42:28,299 [pN:main.1,p:78709,tN:MainThread] 127.0.0.1:54006 - "GET /history/current_history_json?since=2024-02-23T19:39:28.000303 HTTP/1.1" 200 +uvicorn.access INFO 2024-02-23 14:42:29,216 [pN:main.1,p:78709,tN:MainThread] 127.0.0.1:54006 - "GET /api/entry_points?running=true HTTP/1.1" 200 +uvicorn.access INFO 2024-02-23 14:42:31,328 [pN:main.1,p:78709,tN:MainThread] 127.0.0.1:54008 - "GET /history/current_history_json?since=2024-02-23T19:39:28.000303 HTTP/1.1" 200 +uvicorn.access INFO 2024-02-23 14:42:34,358 [pN:main.1,p:78709,tN:MainThread] 127.0.0.1:54024 - "GET /history/current_history_json?since=2024-02-23T19:39:28.000303 HTTP/1.1" 200 +uvicorn.access INFO 2024-02-23 14:42:37,390 [pN:main.1,p:78709,tN:MainThread] 127.0.0.1:60548 - "GET /history/current_history_json?since=2024-02-23T19:39:28.000303 HTTP/1.1" 200 +uvicorn.access INFO 2024-02-23 14:42:39,218 [pN:main.1,p:78709,tN:MainThread] 127.0.0.1:60548 - "GET /api/entry_points?running=true HTTP/1.1" 200 +uvicorn.access INFO 2024-02-23 14:42:40,419 [pN:main.1,p:78709,tN:MainThread] 127.0.0.1:60548 - "GET /history/current_history_json?since=2024-02-23T19:39:28.000303 HTTP/1.1" 200 +uvicorn.access INFO 2024-02-23 14:42:43,450 [pN:main.1,p:78709,tN:MainThread] 127.0.0.1:60564 - "GET /history/current_history_json?since=2024-02-23T19:39:28.000303 HTTP/1.1" 200 +uvicorn.access INFO 2024-02-23 14:42:46,483 [pN:main.1,p:78709,tN:MainThread] 127.0.0.1:59152 - "GET /history/current_history_json?since=2024-02-23T19:39:28.000303 HTTP/1.1" 200 +uvicorn.access INFO 2024-02-23 14:42:50,223 [pN:main.1,p:78709,tN:MainThread] 127.0.0.1:59156 - "GET /api/entry_points?running=true HTTP/1.1" 200 +uvicorn.access INFO 2024-02-23 14:42:50,226 [pN:main.1,p:78709,tN:MainThread] 127.0.0.1:59160 - "GET /history/current_history_json?since=2024-02-23T19:39:28.000303 HTTP/1.1" 200 +uvicorn.access INFO 2024-02-23 14:43:00,219 [pN:main.1,p:78709,tN:MainThread] 127.0.0.1:35248 - "GET /api/entry_points?running=true HTTP/1.1" 200 +uvicorn.access INFO 2024-02-23 14:43:10,212 [pN:main.1,p:78709,tN:MainThread] 127.0.0.1:51892 - "GET /api/entry_points?running=true HTTP/1.1" 200 +uvicorn.access INFO 2024-02-23 14:43:21,208 [pN:main.1,p:78709,tN:MainThread] 127.0.0.1:47266 - "GET /api/entry_points?running=true HTTP/1.1" 200 +uvicorn.access INFO 2024-02-23 14:43:31,217 [pN:main.1,p:78709,tN:MainThread] 127.0.0.1:56258 - "GET /api/entry_points?running=true HTTP/1.1" 200 +uvicorn.access INFO 2024-02-23 14:43:41,211 [pN:main.1,p:78709,tN:MainThread] 127.0.0.1:45128 - "GET /api/entry_points?running=true HTTP/1.1" 200 +uvicorn.access INFO 2024-02-23 14:43:51,208 [pN:main.1,p:78709,tN:MainThread] 127.0.0.1:53190 - "GET /history/current_history_json?since=2024-02-23T19:39:28.000303 HTTP/1.1" 200 +uvicorn.access INFO 2024-02-23 14:44:03,211 [pN:main.1,p:78709,tN:MainThread] 127.0.0.1:44558 - "GET /api/entry_points?running=true HTTP/1.1" 200 +uvicorn.access INFO 2024-02-23 14:44:21,108 [pN:main.1,p:78709,tN:MainThread] 127.0.0.1:35914 - "GET /history/current_history_json?since=2024-02-23T19:39:28.000303 HTTP/1.1" 200 +uvicorn.access INFO 2024-02-23 14:44:21,111 [pN:main.1,p:78709,tN:MainThread] 127.0.0.1:35922 - "GET /api/entry_points?running=true HTTP/1.1" 200 +uvicorn.access INFO 2024-02-23 14:44:24,142 [pN:main.1,p:78709,tN:MainThread] 127.0.0.1:35934 - "GET /history/current_history_json?since=2024-02-23T19:39:28.000303 HTTP/1.1" 200 +uvicorn.access INFO 2024-02-23 14:44:27,170 [pN:main.1,p:78709,tN:MainThread] 127.0.0.1:46974 - "GET /history/current_history_json?since=2024-02-23T19:39:28.000303 HTTP/1.1" 200 +uvicorn.access INFO 2024-02-23 14:44:30,199 [pN:main.1,p:78709,tN:MainThread] 127.0.0.1:46978 - "GET /history/current_history_json?since=2024-02-23T19:39:28.000303 HTTP/1.1" 200 +uvicorn.access INFO 2024-02-23 14:44:31,076 [pN:main.1,p:78709,tN:MainThread] 127.0.0.1:46978 - "GET /api/entry_points?running=true HTTP/1.1" 200 +uvicorn.access INFO 2024-02-23 14:44:33,228 [pN:main.1,p:78709,tN:MainThread] 127.0.0.1:46980 - "GET /history/current_history_json?since=2024-02-23T19:39:28.000303 HTTP/1.1" 200 +uvicorn.access INFO 2024-02-23 14:44:36,257 [pN:main.1,p:78709,tN:MainThread] 127.0.0.1:59440 - "GET /history/current_history_json?since=2024-02-23T19:39:28.000303 HTTP/1.1" 200 +uvicorn.access INFO 2024-02-23 14:44:39,287 [pN:main.1,p:78709,tN:MainThread] 127.0.0.1:59442 - "GET /history/current_history_json?since=2024-02-23T19:39:28.000303 HTTP/1.1" 200 +uvicorn.access INFO 2024-02-23 14:44:41,080 [pN:main.1,p:78709,tN:MainThread] 127.0.0.1:59442 - "GET /api/entry_points?running=true HTTP/1.1" 200 +uvicorn.access INFO 2024-02-23 14:44:42,325 [pN:main.1,p:78709,tN:MainThread] 127.0.0.1:59442 - "GET /history/current_history_json?since=2024-02-23T19:39:28.000303 HTTP/1.1" 200 +uvicorn.access INFO 2024-02-23 14:44:45,358 [pN:main.1,p:78709,tN:MainThread] 127.0.0.1:59446 - "GET /history/current_history_json?since=2024-02-23T19:39:28.000303 HTTP/1.1" 200 +uvicorn.access INFO 2024-02-23 14:44:48,387 [pN:main.1,p:78709,tN:MainThread] 127.0.0.1:33128 - "GET /history/current_history_json?since=2024-02-23T19:39:28.000303 HTTP/1.1" 200 +uvicorn.access INFO 2024-02-23 14:44:51,081 [pN:main.1,p:78709,tN:MainThread] 127.0.0.1:33136 - "GET /api/entry_points?running=true HTTP/1.1" 200 +uvicorn.access INFO 2024-02-23 14:44:51,415 [pN:main.1,p:78709,tN:MainThread] 127.0.0.1:33136 - "GET /history/current_history_json?since=2024-02-23T19:39:28.000303 HTTP/1.1" 200 +uvicorn.access INFO 2024-02-23 14:44:54,446 [pN:main.1,p:78709,tN:MainThread] 127.0.0.1:33146 - "GET /history/current_history_json?since=2024-02-23T19:39:28.000303 HTTP/1.1" 200 +uvicorn.access INFO 2024-02-23 14:44:57,476 [pN:main.1,p:78709,tN:MainThread] 127.0.0.1:59288 - "GET /history/current_history_json?since=2024-02-23T19:39:28.000303 HTTP/1.1" 200 +uvicorn.access INFO 2024-02-23 14:45:00,507 [pN:main.1,p:78709,tN:MainThread] 127.0.0.1:59292 - "GET /history/current_history_json?since=2024-02-23T19:39:28.000303 HTTP/1.1" 200 +uvicorn.access INFO 2024-02-23 14:45:01,083 [pN:main.1,p:78709,tN:MainThread] 127.0.0.1:59292 - "GET /api/entry_points?running=true HTTP/1.1" 200 +uvicorn.access INFO 2024-02-23 14:45:03,547 [pN:main.1,p:78709,tN:MainThread] 127.0.0.1:59304 - "GET /history/current_history_json?since=2024-02-23T19:39:28.000303 HTTP/1.1" 200 +uvicorn.access INFO 2024-02-23 14:45:06,581 [pN:main.1,p:78709,tN:MainThread] 127.0.0.1:50814 - "GET /history/current_history_json?since=2024-02-23T19:39:28.000303 HTTP/1.1" 200 +uvicorn.access INFO 2024-02-23 14:45:09,611 [pN:main.1,p:78709,tN:MainThread] 127.0.0.1:50820 - "GET /history/current_history_json?since=2024-02-23T19:39:28.000303 HTTP/1.1" 200 +uvicorn.access INFO 2024-02-23 14:45:11,084 [pN:main.1,p:78709,tN:MainThread] 127.0.0.1:50820 - "GET /api/entry_points?running=true HTTP/1.1" 200 +uvicorn.access INFO 2024-02-23 14:45:12,643 [pN:main.1,p:78709,tN:MainThread] 127.0.0.1:50820 - "GET /history/current_history_json?since=2024-02-23T19:39:28.000303 HTTP/1.1" 200 +uvicorn.access INFO 2024-02-23 14:45:15,672 [pN:main.1,p:78709,tN:MainThread] 127.0.0.1:55644 - "GET /history/current_history_json?since=2024-02-23T19:39:28.000303 HTTP/1.1" 200 +uvicorn.access INFO 2024-02-23 14:45:18,702 [pN:main.1,p:78709,tN:MainThread] 127.0.0.1:55654 - "GET /history/current_history_json?since=2024-02-23T19:39:28.000303 HTTP/1.1" 200 +uvicorn.access INFO 2024-02-23 14:45:21,086 [pN:main.1,p:78709,tN:MainThread] 127.0.0.1:55666 - "GET /api/entry_points?running=true HTTP/1.1" 200 +uvicorn.access INFO 2024-02-23 14:45:21,730 [pN:main.1,p:78709,tN:MainThread] 127.0.0.1:55666 - "GET /history/current_history_json?since=2024-02-23T19:39:28.000303 HTTP/1.1" 200 +uvicorn.access INFO 2024-02-23 14:45:25,210 [pN:main.1,p:78709,tN:MainThread] 127.0.0.1:55680 - "GET /history/current_history_json?since=2024-02-23T19:39:28.000303 HTTP/1.1" 200 +uvicorn.access INFO 2024-02-23 14:45:26,488 [pN:main.1,p:78709,tN:MainThread] 127.0.0.1:55680 - "GET /history/current_history_json?since=2024-02-23T19:39:28.000303 HTTP/1.1" 200 +uvicorn.access INFO 2024-02-23 14:45:29,524 [pN:main.1,p:78709,tN:MainThread] 127.0.0.1:43894 - "GET /history/current_history_json?since=2024-02-23T19:39:28.000303 HTTP/1.1" 200 +uvicorn.access INFO 2024-02-23 14:45:31,088 [pN:main.1,p:78709,tN:MainThread] 127.0.0.1:43894 - "GET /api/entry_points?running=true HTTP/1.1" 200 +uvicorn.access INFO 2024-02-23 14:45:32,554 [pN:main.1,p:78709,tN:MainThread] 127.0.0.1:43894 - "GET /history/current_history_json?since=2024-02-23T19:39:28.000303 HTTP/1.1" 200 +uvicorn.access INFO 2024-02-23 14:45:35,586 [pN:main.1,p:78709,tN:MainThread] 127.0.0.1:43896 - "GET /history/current_history_json?since=2024-02-23T19:39:28.000303 HTTP/1.1" 200 +uvicorn.access INFO 2024-02-23 14:45:38,615 [pN:main.1,p:78709,tN:MainThread] 127.0.0.1:60812 - "GET /history/current_history_json?since=2024-02-23T19:39:28.000303 HTTP/1.1" 200 +uvicorn.access INFO 2024-02-23 14:45:41,108 [pN:main.1,p:78709,tN:MainThread] 127.0.0.1:60828 - "GET /api/entry_points?running=true HTTP/1.1" 200 +uvicorn.access INFO 2024-02-23 14:45:41,646 [pN:main.1,p:78709,tN:MainThread] 127.0.0.1:60828 - "GET /history/current_history_json?since=2024-02-23T19:39:28.000303 HTTP/1.1" 200 +uvicorn.access INFO 2024-02-23 14:45:44,678 [pN:main.1,p:78709,tN:MainThread] 127.0.0.1:60840 - "GET /history/current_history_json?since=2024-02-23T19:39:28.000303 HTTP/1.1" 200 +uvicorn.access INFO 2024-02-23 14:45:47,716 [pN:main.1,p:78709,tN:MainThread] 127.0.0.1:34606 - "GET /history/current_history_json?since=2024-02-23T19:39:28.000303 HTTP/1.1" 200 +uvicorn.access INFO 2024-02-23 14:45:50,747 [pN:main.1,p:78709,tN:MainThread] 127.0.0.1:34620 - "GET /history/current_history_json?since=2024-02-23T19:39:28.000303 HTTP/1.1" 200 +uvicorn.access INFO 2024-02-23 14:45:51,092 [pN:main.1,p:78709,tN:MainThread] 127.0.0.1:34620 - "GET /api/entry_points?running=true HTTP/1.1" 200 +uvicorn.access INFO 2024-02-23 14:45:53,780 [pN:main.1,p:78709,tN:MainThread] 127.0.0.1:34624 - "GET /history/current_history_json?since=2024-02-23T19:39:28.000303 HTTP/1.1" 200 +uvicorn.access INFO 2024-02-23 14:45:56,810 [pN:main.1,p:78709,tN:MainThread] 127.0.0.1:43404 - "GET /history/current_history_json?since=2024-02-23T19:39:28.000303 HTTP/1.1" 200 +uvicorn.access INFO 2024-02-23 14:45:59,843 [pN:main.1,p:78709,tN:MainThread] 127.0.0.1:43406 - "GET /history/current_history_json?since=2024-02-23T19:39:28.000303 HTTP/1.1" 200 +uvicorn.access INFO 2024-02-23 14:46:01,093 [pN:main.1,p:78709,tN:MainThread] 127.0.0.1:43406 - "GET /api/entry_points?running=true HTTP/1.1" 200 +uvicorn.access INFO 2024-02-23 14:46:02,885 [pN:main.1,p:78709,tN:MainThread] 127.0.0.1:43406 - "GET /history/current_history_json?since=2024-02-23T19:39:28.000303 HTTP/1.1" 200 +uvicorn.access INFO 2024-02-23 14:46:05,916 [pN:main.1,p:78709,tN:MainThread] 127.0.0.1:55884 - "GET /history/current_history_json?since=2024-02-23T19:39:28.000303 HTTP/1.1" 200 +uvicorn.access INFO 2024-02-23 14:46:08,951 [pN:main.1,p:78709,tN:MainThread] 127.0.0.1:55896 - "GET /history/current_history_json?since=2024-02-23T19:39:28.000303 HTTP/1.1" 200 +uvicorn.access INFO 2024-02-23 14:46:11,095 [pN:main.1,p:78709,tN:MainThread] 127.0.0.1:55910 - "GET /api/entry_points?running=true HTTP/1.1" 200 +uvicorn.access INFO 2024-02-23 14:46:11,983 [pN:main.1,p:78709,tN:MainThread] 127.0.0.1:55910 - "GET /history/current_history_json?since=2024-02-23T19:39:28.000303 HTTP/1.1" 200 +uvicorn.access INFO 2024-02-23 14:46:15,013 [pN:main.1,p:78709,tN:MainThread] 127.0.0.1:55920 - "GET /history/current_history_json?since=2024-02-23T19:39:28.000303 HTTP/1.1" 200 +uvicorn.access INFO 2024-02-23 14:46:18,043 [pN:main.1,p:78709,tN:MainThread] 127.0.0.1:42768 - "GET /history/current_history_json?since=2024-02-23T19:39:28.000303 HTTP/1.1" 200 +uvicorn.access INFO 2024-02-23 14:46:21,074 [pN:main.1,p:78709,tN:MainThread] 127.0.0.1:42780 - "GET /history/current_history_json?since=2024-02-23T19:39:28.000303 HTTP/1.1" 200 +uvicorn.access INFO 2024-02-23 14:46:21,095 [pN:main.1,p:78709,tN:MainThread] 127.0.0.1:42794 - "GET /api/entry_points?running=true HTTP/1.1" 200 +uvicorn.access INFO 2024-02-23 14:46:24,116 [pN:main.1,p:78709,tN:MainThread] 127.0.0.1:42804 - "GET /history/current_history_json?since=2024-02-23T19:39:28.000303 HTTP/1.1" 200 +uvicorn.access INFO 2024-02-23 14:46:27,147 [pN:main.1,p:78709,tN:MainThread] 127.0.0.1:45726 - "GET /history/current_history_json?since=2024-02-23T19:39:28.000303 HTTP/1.1" 200 +uvicorn.access INFO 2024-02-23 14:46:30,176 [pN:main.1,p:78709,tN:MainThread] 127.0.0.1:45730 - "GET /history/current_history_json?since=2024-02-23T19:39:28.000303 HTTP/1.1" 200 +uvicorn.access INFO 2024-02-23 14:46:31,096 [pN:main.1,p:78709,tN:MainThread] 127.0.0.1:45730 - "GET /api/entry_points?running=true HTTP/1.1" 200 +uvicorn.access INFO 2024-02-23 14:46:33,207 [pN:main.1,p:78709,tN:MainThread] 127.0.0.1:45732 - "GET /history/current_history_json?since=2024-02-23T19:39:28.000303 HTTP/1.1" 200 + +==> /tmp/tmpqrlh6ih1/gravity/log/celery-beat.log <== +[2024-02-23 14:46:34,296: DEBUG/MainProcess] beat: Synchronizing schedule... +[2024-02-23 14:46:34,297: DEBUG/MainProcess] beat: Waking up in 5.00 minutes. + +==> /tmp/tmpqrlh6ih1/gravity/log/gunicorn.log <== +uvicorn.access INFO 2024-02-23 14:46:36,235 [pN:main.1,p:78709,tN:MainThread] 127.0.0.1:48966 - "GET /history/current_history_json?since=2024-02-23T19:39:28.000303 HTTP/1.1" 200 +uvicorn.access INFO 2024-02-23 14:46:39,266 [pN:main.1,p:78709,tN:MainThread] 127.0.0.1:48982 - "GET /history/current_history_json?since=2024-02-23T19:39:28.000303 HTTP/1.1" 200 +uvicorn.access INFO 2024-02-23 14:46:41,098 [pN:main.1,p:78709,tN:MainThread] 127.0.0.1:48982 - "GET /api/entry_points?running=true HTTP/1.1" 200 +uvicorn.access INFO 2024-02-23 14:46:42,295 [pN:main.1,p:78709,tN:MainThread] 127.0.0.1:48982 - "GET /history/current_history_json?since=2024-02-23T19:39:28.000303 HTTP/1.1" 200 +uvicorn.access INFO 2024-02-23 14:46:45,325 [pN:main.1,p:78709,tN:MainThread] 127.0.0.1:48996 - "GET /history/current_history_json?since=2024-02-23T19:39:28.000303 HTTP/1.1" 200 +uvicorn.access INFO 2024-02-23 14:46:48,356 [pN:main.1,p:78709,tN:MainThread] 127.0.0.1:37342 - "GET /history/current_history_json?since=2024-02-23T19:39:28.000303 HTTP/1.1" 200 +uvicorn.access INFO 2024-02-23 14:46:51,108 [pN:main.1,p:78709,tN:MainThread] 127.0.0.1:37354 - "GET /api/entry_points?running=true HTTP/1.1" 200 +uvicorn.access INFO 2024-02-23 14:46:51,384 [pN:main.1,p:78709,tN:MainThread] 127.0.0.1:37354 - "GET /history/current_history_json?since=2024-02-23T19:39:28.000303 HTTP/1.1" 200 +uvicorn.access INFO 2024-02-23 14:46:54,415 [pN:main.1,p:78709,tN:MainThread] 127.0.0.1:37356 - "GET /history/current_history_json?since=2024-02-23T19:39:28.000303 HTTP/1.1" 200 +uvicorn.access INFO 2024-02-23 14:46:57,446 [pN:main.1,p:78709,tN:MainThread] 127.0.0.1:59558 - "GET /history/current_history_json?since=2024-02-23T19:39:28.000303 HTTP/1.1" 200 +uvicorn.access INFO 2024-02-23 14:47:00,478 [pN:main.1,p:78709,tN:MainThread] 127.0.0.1:59572 - "GET /history/current_history_json?since=2024-02-23T19:39:28.000303 HTTP/1.1" 200 +uvicorn.access INFO 2024-02-23 14:47:01,102 [pN:main.1,p:78709,tN:MainThread] 127.0.0.1:59572 - "GET /api/entry_points?running=true HTTP/1.1" 200 +uvicorn.access INFO 2024-02-23 14:47:03,507 [pN:main.1,p:78709,tN:MainThread] 127.0.0.1:59582 - "GET /history/current_history_json?since=2024-02-23T19:39:28.000303 HTTP/1.1" 200 +uvicorn.access INFO 2024-02-23 14:47:06,538 [pN:main.1,p:78709,tN:MainThread] 127.0.0.1:48358 - "GET /history/current_history_json?since=2024-02-23T19:39:28.000303 HTTP/1.1" 200 +uvicorn.access INFO 2024-02-23 14:47:09,566 [pN:main.1,p:78709,tN:MainThread] 127.0.0.1:48370 - "GET /history/current_history_json?since=2024-02-23T19:39:28.000303 HTTP/1.1" 200 +uvicorn.access INFO 2024-02-23 14:47:11,103 [pN:main.1,p:78709,tN:MainThread] 127.0.0.1:48370 - "GET /api/entry_points?running=true HTTP/1.1" 200 +uvicorn.access INFO 2024-02-23 14:47:12,592 [pN:main.1,p:78709,tN:MainThread] 127.0.0.1:48370 - "GET /history/current_history_json?since=2024-02-23T19:39:28.000303 HTTP/1.1" 200 +uvicorn.access INFO 2024-02-23 14:47:15,621 [pN:main.1,p:78709,tN:MainThread] 127.0.0.1:48386 - "GET /history/current_history_json?since=2024-02-23T19:39:28.000303 HTTP/1.1" 200 +uvicorn.access INFO 2024-02-23 14:47:18,657 [pN:main.1,p:78709,tN:MainThread] 127.0.0.1:50644 - "GET /history/current_history_json?since=2024-02-23T19:39:28.000303 HTTP/1.1" 200 +uvicorn.access INFO 2024-02-23 14:47:21,107 [pN:main.1,p:78709,tN:MainThread] 127.0.0.1:50650 - "GET /api/entry_points?running=true HTTP/1.1" 200 +uvicorn.access INFO 2024-02-23 14:47:21,686 [pN:main.1,p:78709,tN:MainThread] 127.0.0.1:50650 - "GET /history/current_history_json?since=2024-02-23T19:39:28.000303 HTTP/1.1" 200 +uvicorn.access INFO 2024-02-23 14:47:24,717 [pN:main.1,p:78709,tN:MainThread] 127.0.0.1:50664 - "GET /history/current_history_json?since=2024-02-23T19:39:28.000303 HTTP/1.1" 200 +uvicorn.access INFO 2024-02-23 14:47:27,747 [pN:main.1,p:78709,tN:MainThread] 127.0.0.1:42422 - "GET /history/current_history_json?since=2024-02-23T19:39:28.000303 HTTP/1.1" 200 +uvicorn.access INFO 2024-02-23 14:47:30,777 [pN:main.1,p:78709,tN:MainThread] 127.0.0.1:42436 - "GET /history/current_history_json?since=2024-02-23T19:39:28.000303 HTTP/1.1" 200 +uvicorn.access INFO 2024-02-23 14:47:31,107 [pN:main.1,p:78709,tN:MainThread] 127.0.0.1:42436 - "GET /api/entry_points?running=true HTTP/1.1" 200 +uvicorn.access INFO 2024-02-23 14:47:33,807 [pN:main.1,p:78709,tN:MainThread] 127.0.0.1:42440 - "GET /history/current_history_json?since=2024-02-23T19:39:28.000303 HTTP/1.1" 200 +uvicorn.access INFO 2024-02-23 14:47:36,836 [pN:main.1,p:78709,tN:MainThread] 127.0.0.1:46004 - "GET /history/current_history_json?since=2024-02-23T19:39:28.000303 HTTP/1.1" 200 +uvicorn.access INFO 2024-02-23 14:47:39,863 [pN:main.1,p:78709,tN:MainThread] 127.0.0.1:46018 - "GET /history/current_history_json?since=2024-02-23T19:39:28.000303 HTTP/1.1" 200 +uvicorn.access INFO 2024-02-23 14:47:41,108 [pN:main.1,p:78709,tN:MainThread] 127.0.0.1:46018 - "GET /api/entry_points?running=true HTTP/1.1" 200 +uvicorn.access INFO 2024-02-23 14:47:42,892 [pN:main.1,p:78709,tN:MainThread] 127.0.0.1:46018 - "GET /history/current_history_json?since=2024-02-23T19:39:28.000303 HTTP/1.1" 200 +uvicorn.access INFO 2024-02-23 14:47:45,921 [pN:main.1,p:78709,tN:MainThread] 127.0.0.1:57628 - "GET /history/current_history_json?since=2024-02-23T19:39:28.000303 HTTP/1.1" 200 +uvicorn.access INFO 2024-02-23 14:47:48,951 [pN:main.1,p:78709,tN:MainThread] 127.0.0.1:57632 - "GET /history/current_history_json?since=2024-02-23T19:39:28.000303 HTTP/1.1" 200 +uvicorn.access INFO 2024-02-23 14:47:51,111 [pN:main.1,p:78709,tN:MainThread] 127.0.0.1:57644 - "GET /api/entry_points?running=true HTTP/1.1" 200 +uvicorn.access INFO 2024-02-23 14:47:51,978 [pN:main.1,p:78709,tN:MainThread] 127.0.0.1:57644 - "GET /history/current_history_json?since=2024-02-23T19:39:28.000303 HTTP/1.1" 200 +uvicorn.access INFO 2024-02-23 14:47:55,007 [pN:main.1,p:78709,tN:MainThread] 127.0.0.1:57660 - "GET /history/current_history_json?since=2024-02-23T19:39:28.000303 HTTP/1.1" 200 +uvicorn.access INFO 2024-02-23 14:47:58,036 [pN:main.1,p:78709,tN:MainThread] 127.0.0.1:49826 - "GET /history/current_history_json?since=2024-02-23T19:39:28.000303 HTTP/1.1" 200 +uvicorn.access INFO 2024-02-23 14:48:01,065 [pN:main.1,p:78709,tN:MainThread] 127.0.0.1:49842 - "GET /history/current_history_json?since=2024-02-23T19:39:28.000303 HTTP/1.1" 200 +uvicorn.access INFO 2024-02-23 14:48:01,109 [pN:main.1,p:78709,tN:MainThread] 127.0.0.1:49842 - "GET /api/entry_points?running=true HTTP/1.1" 200 +uvicorn.access INFO 2024-02-23 14:48:04,207 [pN:main.1,p:78709,tN:MainThread] 127.0.0.1:49856 - "GET /history/current_history_json?since=2024-02-23T19:39:28.000303 HTTP/1.1" 200 +uvicorn.access INFO 2024-02-23 14:48:11,204 [pN:main.1,p:78709,tN:MainThread] 127.0.0.1:43370 - "GET /api/entry_points?running=true HTTP/1.1" 200 +uvicorn.access INFO 2024-02-23 14:48:22,200 [pN:main.1,p:78709,tN:MainThread] 127.0.0.1:56118 - "GET /api/entry_points?running=true HTTP/1.1" 200 +uvicorn.access INFO 2024-02-23 14:48:32,203 [pN:main.1,p:78709,tN:MainThread] 127.0.0.1:46388 - "GET /api/entry_points?running=true HTTP/1.1" 200 +uvicorn.access INFO 2024-02-23 14:48:43,205 [pN:main.1,p:78709,tN:MainThread] 127.0.0.1:44136 - "GET /api/entry_points?running=true HTTP/1.1" 200 +uvicorn.access INFO 2024-02-23 14:48:53,213 [pN:main.1,p:78709,tN:MainThread] 127.0.0.1:51218 - "GET /api/entry_points?running=true HTTP/1.1" 200 +uvicorn.access INFO 2024-02-23 14:49:05,199 [pN:main.1,p:78709,tN:MainThread] 127.0.0.1:59494 - "GET /history/current_history_json?since=2024-02-23T19:39:28.000303 HTTP/1.1" 200 +uvicorn.access INFO 2024-02-23 14:50:03,199 [pN:main.1,p:78709,tN:MainThread] 127.0.0.1:58916 - "GET /api/entry_points?running=true HTTP/1.1" 200 +uvicorn.access INFO 2024-02-23 14:50:06,195 [pN:main.1,p:78709,tN:MainThread] 127.0.0.1:56064 - "GET /history/current_history_json?since=2024-02-23T19:39:28.000303 HTTP/1.1" 200 +uvicorn.access INFO 2024-02-23 14:51:03,204 [pN:main.1,p:78709,tN:MainThread] 127.0.0.1:46606 - "GET /api/entry_points?running=true HTTP/1.1" 200 +uvicorn.access INFO 2024-02-23 14:51:07,197 [pN:main.1,p:78709,tN:MainThread] 127.0.0.1:58106 - "GET /history/current_history_json?since=2024-02-23T19:39:28.000303 HTTP/1.1" 200 + +==> /tmp/tmpqrlh6ih1/gravity/log/celery-beat.log <== +[2024-02-23 14:51:34,270: DEBUG/MainProcess] beat: Synchronizing schedule... +[2024-02-23 14:51:34,271: INFO/MainProcess] Scheduler: Sending due task clean-object-store-caches (galaxy.clean_object_store_caches) +[2024-02-23 14:51:34,287: DEBUG/MainProcess] galaxy.clean_object_store_caches sent. id->2e7725dc-31d4-4d56-8afd-8dae5ec0815c +[2024-02-23 14:51:34,288: DEBUG/MainProcess] beat: Waking up in 5.00 minutes. + +==> /tmp/tmpqrlh6ih1/gravity/log/celery.log <== +[2024-02-23 14:51:35,170: INFO/main] Task galaxy.clean_object_store_caches[2e7725dc-31d4-4d56-8afd-8dae5ec0815c] received +[2024-02-23 14:51:35,171: DEBUG/main] TaskPool: Apply <function fast_trace_task at 0x7f9f1756ed90> (args:('galaxy.clean_object_store_caches', '2e7725dc-31d4-4d56-8afd-8dae5ec0815c', {'lang': 'py', 'task': 'galaxy.clean_object_store_caches', 'id': '2e7725dc-31d4-4d56-8afd-8dae5ec0815c', 'shadow': None, 'eta': None, 'expires': None, 'group': None, 'group_index': None, 'retries': 0, 'timelimit': [None, None], 'root_id': '2e7725dc-31d4-4d56-8afd-8dae5ec0815c', 'parent_id': None, 'argsrepr': '()', 'kwargsrepr': '{}', 'origin': 'gen78504@laila', 'ignore_result': False, 'properties': {'correlation_id': '2e7725dc-31d4-4d56-8afd-8dae5ec0815c', 'reply_to': 'a834fe8d-fc9c-31a2-9791-be846a6fc4af', 'delivery_mode': 2, 'delivery_info': {'exchange': '', 'routing_key': 'galaxy.internal'}, 'priority': 0, 'body_encoding': 'base64', 'delivery_tag': '3b2497f6-7230-41ee-afbb-d68e1f75fbfd'}, 'reply_to': 'a834fe8d-fc9c-31a2-9791-be846a6fc4af', 'correlation_id': '2e7725dc-31d4-4d56-8afd-8dae5ec0815c', 'hostname': 'celery@laila', 'delivery_info': {'exchange': '', 'routing_key': 'galaxy.internal', 'priority': 0, 'redelivered': None},... kwargs:{}) +[2024-02-23 14:51:35,174: INFO/main] Successfully executed Celery task clean_object_store_caches to prune object store cache directories clean_object_store_caches to prune object store cache directories (0.612 ms) +[2024-02-23 14:51:35,174: INFO/main] Task galaxy.clean_object_store_caches[2e7725dc-31d4-4d56-8afd-8dae5ec0815c] succeeded in 0.0025258829118683934s: None + +==> /tmp/tmpqrlh6ih1/gravity/log/gunicorn.log <== +uvicorn.access INFO 2024-02-23 14:52:03,197 [pN:main.1,p:78709,tN:MainThread] 127.0.0.1:34074 - "GET /api/entry_points?running=true HTTP/1.1" 200 +uvicorn.access INFO 2024-02-23 14:52:08,198 [pN:main.1,p:78709,tN:MainThread] 127.0.0.1:46298 - "GET /history/current_history_json?since=2024-02-23T19:39:28.000303 HTTP/1.1" 200 +uvicorn.access INFO 2024-02-23 14:53:03,199 [pN:main.1,p:78709,tN:MainThread] 127.0.0.1:52976 - "GET /api/entry_points?running=true HTTP/1.1" 200 +uvicorn.access INFO 2024-02-23 14:53:04,797 [pN:main.1,p:78709,tN:MainThread] 127.0.0.1:52976 - "GET /history/current_history_json?since=2024-02-23T19:39:28.000303 HTTP/1.1" 200 +uvicorn.access INFO 2024-02-23 14:53:08,199 [pN:main.1,p:78709,tN:MainThread] 127.0.0.1:56382 - "GET /history/current_history_json?since=2024-02-23T19:39:28.000303 HTTP/1.1" 200 +uvicorn.access INFO 2024-02-23 14:53:14,193 [pN:main.1,p:78709,tN:MainThread] 127.0.0.1:56384 - "GET /api/entry_points?running=true HTTP/1.1" 200 +uvicorn.access INFO 2024-02-23 14:53:24,195 [pN:main.1,p:78709,tN:MainThread] 127.0.0.1:57160 - "GET /api/entry_points?running=true HTTP/1.1" 200 +uvicorn.access INFO 2024-02-23 14:53:35,193 [pN:main.1,p:78709,tN:MainThread] 127.0.0.1:37546 - "GET /api/entry_points?running=true HTTP/1.1" 200 +uvicorn.access INFO 2024-02-23 14:53:45,192 [pN:main.1,p:78709,tN:MainThread] 127.0.0.1:47560 - "GET /api/entry_points?running=true HTTP/1.1" 200 +uvicorn.access INFO 2024-02-23 14:53:55,194 [pN:main.1,p:78709,tN:MainThread] 127.0.0.1:53882 - "GET /api/entry_points?running=true HTTP/1.1" 200 +uvicorn.access INFO 2024-02-23 14:54:09,190 [pN:main.1,p:78709,tN:MainThread] 127.0.0.1:52604 - "GET /history/current_history_json?since=2024-02-23T19:39:28.000303 HTTP/1.1" 200 +uvicorn.access INFO 2024-02-23 14:54:19,613 [pN:main.1,p:78709,tN:MainThread] 127.0.0.1:42472 - "GET /history/current_history_json?since=2024-02-23T19:39:28.000303 HTTP/1.1" 200 +uvicorn.access INFO 2024-02-23 14:54:19,616 [pN:main.1,p:78709,tN:MainThread] 127.0.0.1:42476 - "GET /api/entry_points?running=true HTTP/1.1" 200 +uvicorn.access INFO 2024-02-23 14:54:22,643 [pN:main.1,p:78709,tN:MainThread] 127.0.0.1:42492 - "GET /history/current_history_json?since=2024-02-23T19:39:28.000303 HTTP/1.1" 200 +uvicorn.access INFO 2024-02-23 14:54:25,672 [pN:main.1,p:78709,tN:MainThread] 127.0.0.1:44058 - "GET /history/current_history_json?since=2024-02-23T19:39:28.000303 HTTP/1.1" 200 +uvicorn.access INFO 2024-02-23 14:54:28,700 [pN:main.1,p:78709,tN:MainThread] 127.0.0.1:44072 - "GET /history/current_history_json?since=2024-02-23T19:39:28.000303 HTTP/1.1" 200 +uvicorn.access INFO 2024-02-23 14:54:29,595 [pN:main.1,p:78709,tN:MainThread] 127.0.0.1:44072 - "GET /api/entry_points?running=true HTTP/1.1" 200 +uvicorn.access INFO 2024-02-23 14:54:31,729 [pN:main.1,p:78709,tN:MainThread] 127.0.0.1:44088 - "GET /history/current_history_json?since=2024-02-23T19:39:28.000303 HTTP/1.1" 200 +uvicorn.access INFO 2024-02-23 14:54:34,768 [pN:main.1,p:78709,tN:MainThread] 127.0.0.1:44090 - "GET /history/current_history_json?since=2024-02-23T19:39:28.000303 HTTP/1.1" 200 +uvicorn.access INFO 2024-02-23 14:54:37,802 [pN:main.1,p:78709,tN:MainThread] 127.0.0.1:60124 - "GET /history/current_history_json?since=2024-02-23T19:39:28.000303 HTTP/1.1" 200 +uvicorn.access INFO 2024-02-23 14:54:39,595 [pN:main.1,p:78709,tN:MainThread] 127.0.0.1:60124 - "GET /api/entry_points?running=true HTTP/1.1" 200 +uvicorn.access INFO 2024-02-23 14:54:40,835 [pN:main.1,p:78709,tN:MainThread] 127.0.0.1:60124 - "GET /history/current_history_json?since=2024-02-23T19:39:28.000303 HTTP/1.1" 200 +uvicorn.access INFO 2024-02-23 14:54:43,874 [pN:main.1,p:78709,tN:MainThread] 127.0.0.1:60140 - "GET /history/current_history_json?since=2024-02-23T19:39:28.000303 HTTP/1.1" 200 +uvicorn.access INFO 2024-02-23 14:54:46,903 [pN:main.1,p:78709,tN:MainThread] 127.0.0.1:45230 - "GET /history/current_history_json?since=2024-02-23T19:39:28.000303 HTTP/1.1" 200 +uvicorn.access INFO 2024-02-23 14:54:49,596 [pN:main.1,p:78709,tN:MainThread] 127.0.0.1:45246 - "GET /api/entry_points?running=true HTTP/1.1" 200 +uvicorn.access INFO 2024-02-23 14:54:49,934 [pN:main.1,p:78709,tN:MainThread] 127.0.0.1:45246 - "GET /history/current_history_json?since=2024-02-23T19:39:28.000303 HTTP/1.1" 200 +uvicorn.access INFO 2024-02-23 14:54:52,972 [pN:main.1,p:78709,tN:MainThread] 127.0.0.1:45260 - "GET /history/current_history_json?since=2024-02-23T19:39:28.000303 HTTP/1.1" 200 +uvicorn.access INFO 2024-02-23 14:54:56,003 [pN:main.1,p:78709,tN:MainThread] 127.0.0.1:50512 - "GET /history/current_history_json?since=2024-02-23T19:39:28.000303 HTTP/1.1" 200 +uvicorn.access INFO 2024-02-23 14:54:59,031 [pN:main.1,p:78709,tN:MainThread] 127.0.0.1:50520 - "GET /history/current_history_json?since=2024-02-23T19:39:28.000303 HTTP/1.1" 200 +uvicorn.access INFO 2024-02-23 14:54:59,599 [pN:main.1,p:78709,tN:MainThread] 127.0.0.1:50520 - "GET /api/entry_points?running=true HTTP/1.1" 200 +uvicorn.access INFO 2024-02-23 14:55:02,064 [pN:main.1,p:78709,tN:MainThread] 127.0.0.1:50532 - "GET /history/current_history_json?since=2024-02-23T19:39:28.000303 HTTP/1.1" 200 +uvicorn.access INFO 2024-02-23 14:55:05,104 [pN:main.1,p:78709,tN:MainThread] 127.0.0.1:50546 - "GET /history/current_history_json?since=2024-02-23T19:39:28.000303 HTTP/1.1" 200 +uvicorn.access INFO 2024-02-23 14:55:08,135 [pN:main.1,p:78709,tN:MainThread] 127.0.0.1:54120 - "GET /history/current_history_json?since=2024-02-23T19:39:28.000303 HTTP/1.1" 200 +uvicorn.access INFO 2024-02-23 14:55:09,600 [pN:main.1,p:78709,tN:MainThread] 127.0.0.1:54120 - "GET /api/entry_points?running=true HTTP/1.1" 200 +uvicorn.access INFO 2024-02-23 14:55:11,164 [pN:main.1,p:78709,tN:MainThread] 127.0.0.1:54120 - "GET /history/current_history_json?since=2024-02-23T19:39:28.000303 HTTP/1.1" 200 +uvicorn.access INFO 2024-02-23 14:55:14,192 [pN:main.1,p:78709,tN:MainThread] 127.0.0.1:54122 - "GET /history/current_history_json?since=2024-02-23T19:39:28.000303 HTTP/1.1" 200 +uvicorn.access INFO 2024-02-23 14:55:17,223 [pN:main.1,p:78709,tN:MainThread] 127.0.0.1:44288 - "GET /history/current_history_json?since=2024-02-23T19:39:28.000303 HTTP/1.1" 200 +uvicorn.access INFO 2024-02-23 14:55:19,605 [pN:main.1,p:78709,tN:MainThread] 127.0.0.1:44296 - "GET /api/entry_points?running=true HTTP/1.1" 200 +uvicorn.access INFO 2024-02-23 14:55:20,251 [pN:main.1,p:78709,tN:MainThread] 127.0.0.1:44296 - "GET /history/current_history_json?since=2024-02-23T19:39:28.000303 HTTP/1.1" 200 +uvicorn.access INFO 2024-02-23 14:55:23,280 [pN:main.1,p:78709,tN:MainThread] 127.0.0.1:44312 - "GET /history/current_history_json?since=2024-02-23T19:39:28.000303 HTTP/1.1" 200 +uvicorn.access INFO 2024-02-23 14:55:26,311 [pN:main.1,p:78709,tN:MainThread] 127.0.0.1:39666 - "GET /history/current_history_json?since=2024-02-23T19:39:28.000303 HTTP/1.1" 200 +uvicorn.access INFO 2024-02-23 14:55:29,341 [pN:main.1,p:78709,tN:MainThread] 127.0.0.1:39682 - "GET /history/current_history_json?since=2024-02-23T19:39:28.000303 HTTP/1.1" 200 +uvicorn.access INFO 2024-02-23 14:55:29,603 [pN:main.1,p:78709,tN:MainThread] 127.0.0.1:39682 - "GET /api/entry_points?running=true HTTP/1.1" 200 +uvicorn.access INFO 2024-02-23 14:55:32,371 [pN:main.1,p:78709,tN:MainThread] 127.0.0.1:39686 - "GET /history/current_history_json?since=2024-02-23T19:39:28.000303 HTTP/1.1" 200 +uvicorn.access INFO 2024-02-23 14:55:35,401 [pN:main.1,p:78709,tN:MainThread] 127.0.0.1:39696 - "GET /history/current_history_json?since=2024-02-23T19:39:28.000303 HTTP/1.1" 200 +uvicorn.access INFO 2024-02-23 14:55:38,427 [pN:main.1,p:78709,tN:MainThread] 127.0.0.1:55476 - "GET /history/current_history_json?since=2024-02-23T19:39:28.000303 HTTP/1.1" 200 +uvicorn.access INFO 2024-02-23 14:55:39,604 [pN:main.1,p:78709,tN:MainThread] 127.0.0.1:55476 - "GET /api/entry_points?running=true HTTP/1.1" 200 +uvicorn.access INFO 2024-02-23 14:55:41,455 [pN:main.1,p:78709,tN:MainThread] 127.0.0.1:55476 - "GET /history/current_history_json?since=2024-02-23T19:39:28.000303 HTTP/1.1" 200 +uvicorn.access INFO 2024-02-23 14:55:44,482 [pN:main.1,p:78709,tN:MainThread] 127.0.0.1:55490 - "GET /history/current_history_json?since=2024-02-23T19:39:28.000303 HTTP/1.1" 200 +uvicorn.access INFO 2024-02-23 14:55:47,511 [pN:main.1,p:78709,tN:MainThread] 127.0.0.1:38200 - "GET /history/current_history_json?since=2024-02-23T19:39:28.000303 HTTP/1.1" 200 +uvicorn.access INFO 2024-02-23 14:55:49,607 [pN:main.1,p:78709,tN:MainThread] 127.0.0.1:38202 - "GET /api/entry_points?running=true HTTP/1.1" 200 +uvicorn.access INFO 2024-02-23 14:55:50,551 [pN:main.1,p:78709,tN:MainThread] 127.0.0.1:38202 - "GET /history/current_history_json?since=2024-02-23T19:39:28.000303 HTTP/1.1" 200 +uvicorn.access INFO 2024-02-23 14:55:53,580 [pN:main.1,p:78709,tN:MainThread] 127.0.0.1:38218 - "GET /history/current_history_json?since=2024-02-23T19:39:28.000303 HTTP/1.1" 200 +uvicorn.access INFO 2024-02-23 14:55:56,609 [pN:main.1,p:78709,tN:MainThread] 127.0.0.1:40354 - "GET /history/current_history_json?since=2024-02-23T19:39:28.000303 HTTP/1.1" 200 + +==> /tmp/tmpqrlh6ih1/gravity/log/celery-beat.log <== +[2024-02-23 14:56:34,388: DEBUG/MainProcess] beat: Synchronizing schedule... +[2024-02-23 14:56:34,389: DEBUG/MainProcess] beat: Waking up in 5.00 minutes. +[2024-02-23 15:01:34,361: DEBUG/MainProcess] beat: Synchronizing schedule... +[2024-02-23 15:01:34,363: INFO/MainProcess] Scheduler: Sending due task clean-object-store-caches (galaxy.clean_object_store_caches) +[2024-02-23 15:01:34,379: DEBUG/MainProcess] galaxy.clean_object_store_caches sent. id->535f1714-1353-40ac-acee-799c6b05d637 +[2024-02-23 15:01:34,380: DEBUG/MainProcess] beat: Waking up in 5.00 minutes. + +==> /tmp/tmpqrlh6ih1/gravity/log/celery.log <== +[2024-02-23 15:01:35,002: INFO/main] Task galaxy.clean_object_store_caches[535f1714-1353-40ac-acee-799c6b05d637] received +[2024-02-23 15:01:35,002: DEBUG/main] TaskPool: Apply <function fast_trace_task at 0x7f9f1756ed90> (args:('galaxy.clean_object_store_caches', '535f1714-1353-40ac-acee-799c6b05d637', {'lang': 'py', 'task': 'galaxy.clean_object_store_caches', 'id': '535f1714-1353-40ac-acee-799c6b05d637', 'shadow': None, 'eta': None, 'expires': None, 'group': None, 'group_index': None, 'retries': 0, 'timelimit': [None, None], 'root_id': '535f1714-1353-40ac-acee-799c6b05d637', 'parent_id': None, 'argsrepr': '()', 'kwargsrepr': '{}', 'origin': 'gen78504@laila', 'ignore_result': False, 'properties': {'correlation_id': '535f1714-1353-40ac-acee-799c6b05d637', 'reply_to': 'a834fe8d-fc9c-31a2-9791-be846a6fc4af', 'delivery_mode': 2, 'delivery_info': {'exchange': '', 'routing_key': 'galaxy.internal'}, 'priority': 0, 'body_encoding': 'base64', 'delivery_tag': '02332643-0c8b-4178-9919-02885eee82d3'}, 'reply_to': 'a834fe8d-fc9c-31a2-9791-be846a6fc4af', 'correlation_id': '535f1714-1353-40ac-acee-799c6b05d637', 'hostname': 'celery@laila', 'delivery_info': {'exchange': '', 'routing_key': 'galaxy.internal', 'priority': 0, 'redelivered': None},... kwargs:{}) +[2024-02-23 15:01:35,005: INFO/main] Successfully executed Celery task clean_object_store_caches to prune object store cache directories clean_object_store_caches to prune object store cache directories (0.552 ms) +[2024-02-23 15:01:35,040: INFO/main] Task galaxy.clean_object_store_caches[535f1714-1353-40ac-acee-799c6b05d637] succeeded in 0.03627739998046309s: None + +==> /tmp/tmpqrlh6ih1/gravity/log/celery-beat.log <== +[2024-02-23 15:06:34,480: DEBUG/MainProcess] beat: Synchronizing schedule... +[2024-02-23 15:06:34,482: DEBUG/MainProcess] beat: Waking up in 5.00 minutes. +[2024-02-23 15:11:34,383: DEBUG/MainProcess] beat: Synchronizing schedule... +[2024-02-23 15:11:34,384: INFO/MainProcess] Scheduler: Sending due task clean-object-store-caches (galaxy.clean_object_store_caches) +[2024-02-23 15:11:34,400: DEBUG/MainProcess] galaxy.clean_object_store_caches sent. id->6eb22bfa-2bec-4d16-ba81-b677c429938a +[2024-02-23 15:11:34,400: DEBUG/MainProcess] beat: Waking up in 5.00 minutes. + +==> /tmp/tmpqrlh6ih1/gravity/log/celery.log <== +[2024-02-23 15:11:35,103: INFO/main] Task galaxy.clean_object_store_caches[6eb22bfa-2bec-4d16-ba81-b677c429938a] received +[2024-02-23 15:11:35,104: DEBUG/main] TaskPool: Apply <function fast_trace_task at 0x7f9f1756ed90> (args:('galaxy.clean_object_store_caches', '6eb22bfa-2bec-4d16-ba81-b677c429938a', {'lang': 'py', 'task': 'galaxy.clean_object_store_caches', 'id': '6eb22bfa-2bec-4d16-ba81-b677c429938a', 'shadow': None, 'eta': None, 'expires': None, 'group': None, 'group_index': None, 'retries': 0, 'timelimit': [None, None], 'root_id': '6eb22bfa-2bec-4d16-ba81-b677c429938a', 'parent_id': None, 'argsrepr': '()', 'kwargsrepr': '{}', 'origin': 'gen78504@laila', 'ignore_result': False, 'properties': {'correlation_id': '6eb22bfa-2bec-4d16-ba81-b677c429938a', 'reply_to': 'a834fe8d-fc9c-31a2-9791-be846a6fc4af', 'delivery_mode': 2, 'delivery_info': {'exchange': '', 'routing_key': 'galaxy.internal'}, 'priority': 0, 'body_encoding': 'base64', 'delivery_tag': 'f8974f4e-d12f-44c5-8432-dd8db2f74b43'}, 'reply_to': 'a834fe8d-fc9c-31a2-9791-be846a6fc4af', 'correlation_id': '6eb22bfa-2bec-4d16-ba81-b677c429938a', 'hostname': 'celery@laila', 'delivery_info': {'exchange': '', 'routing_key': 'galaxy.internal', 'priority': 0, 'redelivered': None},... kwargs:{}) +[2024-02-23 15:11:35,107: INFO/main] Successfully executed Celery task clean_object_store_caches to prune object store cache directories clean_object_store_caches to prune object store cache directories (0.548 ms) +[2024-02-23 15:11:35,107: INFO/main] Task galaxy.clean_object_store_caches[6eb22bfa-2bec-4d16-ba81-b677c429938a] succeeded in 0.0018642700742930174s: None