Mercurial > repos > richard-burhans > ncbi_fcs_adaptor
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planemo upload for repository https://github.com/richard-burhans/galaxytools/tree/main/tools/ncbi_fcs_adaptor commit 74ccb005520db16be005e6471e8624357aca7d94
| author | richard-burhans |
|---|---|
| date | Fri, 01 Mar 2024 18:26:57 +0000 |
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Created directory for Galaxy configuration [/tmp/tmpqrlh6ih1] Writing dependency_resolvers_config_file to path /tmp/tmpqrlh6ih1/resolvers_conf.xml with contents [<dependency_resolvers> <tool_shed_packages /> <conda auto_init="True" auto_install="True" ensure_channels="conda-forge,bioconda,defaults" prefix="/afs/bx.psu.edu/home/rico/miniconda3" condarc_override="/scratch/rico/.planemo/condarc" /> <conda versionless="true" auto_init="True" auto_install="True" ensure_channels="conda-forge,bioconda,defaults" prefix="/afs/bx.psu.edu/home/rico/miniconda3" condarc_override="/scratch/rico/.planemo/condarc" /> </dependency_resolvers> ] Writing tool_conf to path /tmp/tmpqrlh6ih1/tool_conf.xml with contents [<toolbox> <tool file="data_source/upload.xml" /> <tool file="/scratch/rico/galaxytools/tools/ncbi_fcs_adaptor/ncbi_fcs_adaptor.xml" /> </toolbox> ] Starting Galaxy with command [cd /scratch/rico/galaxy && if [ -d .venv ]; then GALAXY_VIRTUAL_ENV=.venv; else GALAXY_VIRTUAL_ENV=/scratch/rico/.planemo/gx_venv_3; fi && export GALAXY_VIRTUAL_ENV && echo "Set \$GALAXY_VIRTUAL_ENV to $GALAXY_VIRTUAL_ENV" && if [ -e "$GALAXY_VIRTUAL_ENV" ]; then echo "Virtual environment directory exists."; else echo "Virtual environment directory does not exist."; fi && if [ ! -e "$GALAXY_VIRTUAL_ENV" ]; then /scratch/rico/.venv/bin/virtualenv $GALAXY_VIRTUAL_ENV -p /scratch/rico/.venv/bin/python3; echo "Created virtualenv"; fi && echo "Set \$GALAXY_VIRTUAL_ENV to $GALAXY_VIRTUAL_ENV" && if [ -e "$GALAXY_VIRTUAL_ENV" ]; then echo "Virtual environment directory exists."; else echo "Virtual environment directory does not exist."; fi && if [ -e "$GALAXY_VIRTUAL_ENV" ]; then . "$GALAXY_VIRTUAL_ENV"/bin/activate; echo "Activated a virtualenv for Galaxy"; echo "$VIRTUAL_ENV"; else echo "Failed to activate virtualenv."; fi && bash -c 'pwd' && bash -c 'which python' && bash -c 'which pip' && bash -c 'echo $GALAXY_VIRTUAL_ENV' && bash -c 'echo $VIRTUAL_ENV' && bash -c 'ls -a' && /scratch/rico/galaxy/run.sh $COMMON_STARTUP_ARGS --server-name main] With environment variables: ============================ GALAXY_CONFIG_OVERRIDE_MASTER_API_KEY="test_key" GALAXY_CONFIG_OVERRIDE_ADMIN_USERS="planemo@galaxyproject.org,test@bx.psu.edu" GALAXY_CONFIG_OVERRIDE_EXPOSE_DATASET_PATH="True" GALAXY_CONFIG_OVERRIDE_COLLECT_OUTPUTS_FROM="job_working_directory" GALAXY_CONFIG_OVERRIDE_ALLOW_PATH_PASTE="True" GALAXY_CONFIG_OVERRIDE_CHECK_MIGRATE_TOOLS="False" GALAXY_CONFIG_OVERRIDE_USE_CACHED_DEPENDENCY_MANAGER="True" GALAXY_CONFIG_OVERRIDE_BRAND="Configured by Planemo" GALAXY_CONFIG_OVERRIDE_STRICT_CWL_VALIDATION="True" GALAXY_CONFIG_OVERRIDE_CLEANUP_JOB="never" GALAXY_CONFIG_OVERRIDE_SINGLE_USER="planemo@galaxyproject.org" GALAXY_CONFIG_OVERRIDE_SERVER_NAME="main" GALAXY_CONFIG_OVERRIDE_FTP_UPLOAD_DIR_TEMPLATE="${ftp_upload_dir}" GALAXY_CONFIG_OVERRIDE_FTP_UPLOAD_PURGE="False" GALAXY_CONFIG_OVERRIDE_FTP_UPLOAD_DIR="/scratch/rico/galaxytools/tools/ncbi_fcs_adaptor/test-data" GALAXY_CONFIG_OVERRIDE_FTP_UPLOAD_SITE="Test Data" GALAXY_CONFIG_OVERRIDE_CHECK_UPLOAD_CONTENT="False" GALAXY_CONFIG_OVERRIDE_TOOL_DEPENDENCY_DIR="/tmp/tmpqrlh6ih1/deps" GALAXY_CONFIG_OVERRIDE_FILE_PATH="/tmp/tmpqrlh6ih1/files" GALAXY_CONFIG_OVERRIDE_NEW_FILE_PATH="/tmp/tmpqrlh6ih1/tmp" GALAXY_CONFIG_OVERRIDE_TOOL_CONFIG_FILE="/tmp/tmpqrlh6ih1/tool_conf.xml,/tmp/tmpqrlh6ih1/shed_tools_conf.xml" GALAXY_CONFIG_OVERRIDE_TOOL_SHEDS_CONFIG_FILE="/tmp/tmpqrlh6ih1/tool_sheds_conf.xml" GALAXY_CONFIG_OVERRIDE_MANAGE_DEPENDENCY_RELATIONSHIPS="False" GALAXY_CONFIG_OVERRIDE_JOB_WORKING_DIRECTORY="/tmp/tmpqrlh6ih1/job_working_directory" GALAXY_CONFIG_OVERRIDE_TEMPLATE_CACHE_PATH="/tmp/tmpqrlh6ih1/compiled_templates" GALAXY_CONFIG_OVERRIDE_CITATION_CACHE_TYPE="file" GALAXY_CONFIG_OVERRIDE_CITATION_CACHE_DATA_DIR="/tmp/tmpqrlh6ih1/citations/data" GALAXY_CONFIG_OVERRIDE_CITATION_CACHE_LOCK_DIR="/tmp/tmpqrlh6ih1/citations/lock" GALAXY_CONFIG_OVERRIDE_DATABASE_AUTO_MIGRATE="True" GALAXY_CONFIG_OVERRIDE_ENABLE_BETA_TOOL_FORMATS="True" GALAXY_CONFIG_OVERRIDE_ID_SECRET="f6141d9059f331976b6b66b722a14f48" GALAXY_CONFIG_OVERRIDE_LOG_LEVEL="DEBUG" GALAXY_CONFIG_OVERRIDE_DEBUG="true" GALAXY_CONFIG_OVERRIDE_WATCH_TOOLS="auto" GALAXY_CONFIG_OVERRIDE_DEFAULT_JOB_SHELL="/bin/bash" GALAXY_CONFIG_OVERRIDE_INTEGRATED_TOOL_PANEL_CONFIG="/tmp/tmpqrlh6ih1/integrated_tool_panel_conf.xml" GALAXY_CONFIG_OVERRIDE_MIGRATED_TOOLS_CONFIG="/tmp/tmpqrlh6ih1/empty_tool_conf.xml" GALAXY_CONFIG_OVERRIDE_TEST_DATA_DIR="/scratch/rico/galaxytools/tools/ncbi_fcs_adaptor/test-data" GALAXY_CONFIG_OVERRIDE_SHED_DATA_MANAGER_CONFIG_FILE="/tmp/tmpqrlh6ih1/shed_data_manager_conf.xml" GALAXY_CONFIG_OVERRIDE_OUTPUTS_TO_WORKING_DIRECTORY="True" GALAXY_CONFIG_OVERRIDE_OBJECT_STORE_STORE_BY="uuid" GALAXY_CONFIG_OVERRIDE_DATABASE_CONNECTION="sqlite:////tmp/tmpqrlh6ih1/galaxy.sqlite?isolation_level=IMMEDIATE" GALAXY_CONFIG_OVERRIDE_JOB_CONFIG_FILE="/scratch/rico/galaxytools/tools/ncbi_fcs_adaptor/planemo_job_conf.xml" GALAXY_CONFIG_OVERRIDE_JOB_METRICS_CONFIG_FILE="/tmp/tmpqrlh6ih1/job_metrics_conf.xml" GALAXY_CONFIG_OVERRIDE_DEPENDENCY_RESOLVERS_CONFIG_FILE="/tmp/tmpqrlh6ih1/resolvers_conf.xml" GALAXY_DEVELOPMENT_ENVIRONMENT="1" GALAXY_LOG="main.log" GALAXY_PID="main.pid" GALAXY_CONFIG_FILE="/tmp/tmpqrlh6ih1/galaxy.yml" GRAVITY_STATE_DIR="/tmp/tmpqrlh6ih1/gravity" SUPERVISORD_SOCKET="/tmp/tmpwpqnbgo4.sock" ============================ galaxy.util.commands WARNING 2024-02-23 14:19:34,170: Passing program arguments as a string may be a security hazard if combined with untrusted input Set $GALAXY_VIRTUAL_ENV to /scratch/rico/.planemo/gx_venv_3 Virtual environment directory does not exist. created virtual environment CPython3.7.3.final.0-64 in 1093ms creator CPython3Posix(dest=/scratch/rico/.planemo/gx_venv_3, clear=False, no_vcs_ignore=False, global=False) seeder FromAppData(download=False, pip=bundle, setuptools=bundle, wheel=bundle, via=copy, app_data_dir=/afs/bx.psu.edu/home/rico/.local/share/virtualenv) added seed packages: pip==23.3.2, setuptools==68.0.0, wheel==0.42.0 activators BashActivator,CShellActivator,FishActivator,NushellActivator,PowerShellActivator,PythonActivator Created virtualenv Set $GALAXY_VIRTUAL_ENV to /scratch/rico/.planemo/gx_venv_3 Virtual environment directory exists. Activated a virtualenv for Galaxy /scratch/rico/.planemo/gx_venv_3 /scratch/rico/galaxy /scratch/rico/.planemo/gx_venv_3/bin/python /scratch/rico/.planemo/gx_venv_3/bin/pip /scratch/rico/.planemo/gx_venv_3 /scratch/rico/.planemo/gx_venv_3 . .. check_model.sh .ci .circleci CITATION client CODE_OF_CONDUCT.md config contrib CONTRIBUTING.md CONTRIBUTORS.md .coveragerc cron database doc .dockerignore extract_dataset_parts.sh .flake8 .git .gitattributes .git-blame-ignore-revs .github .gitignore .gitpod.yml hooks .isort.cfg .k8s_ci.Dockerfile lib LICENSE.txt main.log Makefile manage_db.sh manage_toolshed_db.sh mypy.ini package.json packages .pre-commit-config.yaml.sample pyproject.toml pytest.ini README.rst .redocly.lint-ignore.yaml .redocly.yaml requirements.txt rolling_restart.sh run_reports.sh run.sh run_tests.sh run_tool_shed.sh scripts SECURITY.md static templates test test-data tool-data tools tox.ini tsconfig.json .vscode Activating virtualenv at /scratch/rico/.planemo/gx_venv_3 Requirement already satisfied: pip>=20.3 in /scratch/rico/.planemo/gx_venv_3/lib/python3.7/site-packages (23.3.2) Requirement already satisfied: wheel in /scratch/rico/.planemo/gx_venv_3/lib/python3.7/site-packages (0.42.0) [notice] A new release of pip is available: 23.3.2 -> 24.0 [notice] To update, run: pip install --upgrade pip Looking in indexes: https://wheels.galaxyproject.org/simple, https://pypi.python.org/simple Ignoring billiard: markers 'python_version >= "3.8" and python_version < "3.12"' don't match your environment Ignoring celery: markers 'python_version >= "3.8" and python_version < "3.12"' don't match your environment Ignoring colorama: markers 'python_version >= "3.7" and python_version < "3.12" and platform_system == "Windows"' don't match your environment Ignoring kombu: markers 'python_version >= "3.8" and python_version < "3.12"' don't match your environment Ignoring numpy: markers 'python_version >= "3.8" and python_version < "3.9"' don't match your environment Ignoring numpy: markers 'python_version >= "3.9" and python_version < "3.12"' don't match your environment Ignoring pyreadline3: markers 'sys_platform == "win32" and python_version >= "3.8" and python_version < "3.12"' don't match your environment Ignoring pyreadline: markers 'sys_platform == "win32" and python_version < "3.8" and python_version >= "3.7"' don't match your environment Ignoring tzdata: markers 'python_version >= "3.7" and python_version < "3.12" and platform_system == "Windows"' don't match your environment Collecting a2wsgi==1.7.0 (from -r requirements.txt (line 1)) Using cached a2wsgi-1.7.0-py3-none-any.whl.metadata (1.6 kB) Collecting adal==1.2.7 (from -r requirements.txt (line 2)) Using cached adal-1.2.7-py2.py3-none-any.whl (55 kB) Collecting aiobotocore==2.4.2 (from -r requirements.txt (line 3)) Using cached aiobotocore-2.4.2-py3-none-any.whl.metadata (19 kB) Collecting aiodataloader==0.4.0 (from -r requirements.txt (line 4)) Using cached aiodataloader-0.4.0-py3-none-any.whl.metadata (16 kB) Collecting aiofiles==23.2.1 (from -r requirements.txt (line 5)) Using cached aiofiles-23.2.1-py3-none-any.whl.metadata (9.7 kB) Collecting aiohttp==3.8.6 (from -r requirements.txt (line 6)) Using cached aiohttp-3.8.6-cp37-cp37m-manylinux_2_17_x86_64.manylinux2014_x86_64.whl.metadata (7.7 kB) Collecting aioitertools==0.11.0 (from -r requirements.txt (line 7)) Using cached aioitertools-0.11.0-py3-none-any.whl.metadata (3.3 kB) Collecting aiosignal==1.3.1 (from -r requirements.txt (line 8)) Using cached aiosignal-1.3.1-py3-none-any.whl.metadata (4.0 kB) Collecting alembic==1.12.1 (from -r requirements.txt (line 9)) Using cached alembic-1.12.1-py3-none-any.whl.metadata (7.3 kB) Collecting amqp==5.2.0 (from -r requirements.txt (line 10)) Using cached amqp-5.2.0-py3-none-any.whl.metadata (8.9 kB) Collecting aniso8601==9.0.1 (from -r requirements.txt (line 11)) Using cached aniso8601-9.0.1-py2.py3-none-any.whl (52 kB) Collecting anyio==3.7.1 (from -r requirements.txt (line 12)) Using cached anyio-3.7.1-py3-none-any.whl.metadata (4.7 kB) Collecting apispec==6.3.0 (from -r requirements.txt (line 13)) Using cached apispec-6.3.0-py3-none-any.whl.metadata (11 kB) Collecting appdirs==1.4.4 (from -r requirements.txt (line 14)) Using cached appdirs-1.4.4-py2.py3-none-any.whl (9.6 kB) Collecting arcp==0.2.1 (from -r requirements.txt (line 15)) Using cached arcp-0.2.1-py2.py3-none-any.whl (15 kB) Collecting argcomplete==3.1.2 (from -r requirements.txt (line 16)) Using cached argcomplete-3.1.2-py3-none-any.whl.metadata (16 kB) Collecting async-timeout==4.0.3 (from -r requirements.txt (line 17)) Using cached async_timeout-4.0.3-py3-none-any.whl.metadata (4.2 kB) Collecting asynctest==0.13.0 (from -r requirements.txt (line 18)) Using cached asynctest-0.13.0-py3-none-any.whl (26 kB) Collecting attmap==0.13.2 (from -r requirements.txt (line 19)) Using cached attmap-0.13.2-py3-none-any.whl (12 kB) Collecting attrs==23.1.0 (from -r requirements.txt (line 20)) Using cached attrs-23.1.0-py3-none-any.whl.metadata (11 kB) Collecting babel==2.13.1 (from -r requirements.txt (line 21)) Using cached Babel-2.13.1-py3-none-any.whl.metadata (1.6 kB) Collecting backports-zoneinfo==0.2.1 (from -r requirements.txt (line 22)) Using cached backports.zoneinfo-0.2.1-cp37-cp37m-manylinux1_x86_64.whl (70 kB) Collecting bagit-profile==1.3.1 (from -r requirements.txt (line 23)) Using cached bagit_profile-1.3.1-py3-none-any.whl (14 kB) Collecting bagit==1.8.1 (from -r requirements.txt (line 24)) Using cached bagit-1.8.1-py2.py3-none-any.whl (35 kB) Collecting bcrypt==4.0.1 (from -r requirements.txt (line 25)) Using cached bcrypt-4.0.1-cp36-abi3-manylinux_2_28_x86_64.whl.metadata (9.0 kB) Collecting bdbag==1.7.1 (from -r requirements.txt (line 26)) Using cached bdbag-1.7.1-py2.py3-none-any.whl.metadata (7.8 kB) Collecting beaker==1.12.1 (from -r requirements.txt (line 27)) Using cached Beaker-1.12.1-py3-none-any.whl Collecting billiard==3.6.4.0 (from -r requirements.txt (line 28)) Using cached billiard-3.6.4.0-py3-none-any.whl (89 kB) Collecting bioblend==1.2.0 (from -r requirements.txt (line 30)) Using cached bioblend-1.2.0-py2.py3-none-any.whl.metadata (2.3 kB) Collecting bleach==6.0.0 (from -r requirements.txt (line 31)) Using cached bleach-6.0.0-py3-none-any.whl.metadata (29 kB) Collecting boltons==23.1.1 (from -r requirements.txt (line 32)) Using cached boltons-23.1.1-py2.py3-none-any.whl.metadata (1.4 kB) Collecting boto==2.49.0 (from -r requirements.txt (line 33)) Using cached boto-2.49.0-py2.py3-none-any.whl (1.4 MB) Collecting botocore==1.27.59 (from -r requirements.txt (line 34)) Using cached botocore-1.27.59-py3-none-any.whl.metadata (5.9 kB) Collecting bx-python==0.10.0 (from -r requirements.txt (line 35)) Using cached bx_python-0.10.0-cp37-cp37m-manylinux_2_17_x86_64.manylinux2014_x86_64.whl.metadata (3.0 kB) Collecting cachecontrol==0.13.1 (from cachecontrol[filecache]==0.13.1->-r requirements.txt (line 36)) Using cached cachecontrol-0.13.1-py3-none-any.whl.metadata (3.0 kB) Collecting cached-property==1.5.2 (from -r requirements.txt (line 37)) Using cached cached_property-1.5.2-py2.py3-none-any.whl (7.6 kB) Collecting celery==5.2.7 (from -r requirements.txt (line 38)) Using cached celery-5.2.7-py3-none-any.whl.metadata (20 kB) Collecting certifi==2023.11.17 (from -r requirements.txt (line 40)) Using cached certifi-2023.11.17-py3-none-any.whl.metadata (2.2 kB) Collecting cffi==1.15.1 (from -r requirements.txt (line 41)) Using cached cffi-1.15.1-cp37-cp37m-manylinux_2_17_x86_64.manylinux2014_x86_64.whl.metadata (1.1 kB) Collecting charset-normalizer==3.3.2 (from -r requirements.txt (line 42)) Using cached charset_normalizer-3.3.2-cp37-cp37m-manylinux_2_17_x86_64.manylinux2014_x86_64.whl.metadata (33 kB) Collecting cheetah3==3.2.6.post1 (from -r requirements.txt (line 43)) Using cached https://wheels.galaxyproject.org/simple/cheetah3/Cheetah3-3.2.6.post1-cp37-cp37m-manylinux_2_5_x86_64.manylinux1_x86_64.manylinux_2_17_x86_64.manylinux2014_x86_64.whl (199 kB) Collecting circus==0.18.0 (from -r requirements.txt (line 44)) Using cached circus-0.18.0-py3-none-any.whl.metadata (2.0 kB) Collecting click-didyoumean==0.3.0 (from -r requirements.txt (line 45)) Using cached click_didyoumean-0.3.0-py3-none-any.whl (2.7 kB) Collecting click-plugins==1.1.1 (from -r requirements.txt (line 46)) Using cached click_plugins-1.1.1-py2.py3-none-any.whl (7.5 kB) Collecting click-repl==0.3.0 (from -r requirements.txt (line 47)) Using cached click_repl-0.3.0-py3-none-any.whl.metadata (3.6 kB) Collecting click==8.1.7 (from -r requirements.txt (line 48)) Using cached click-8.1.7-py3-none-any.whl.metadata (3.0 kB) Collecting cloudauthz==0.6.0 (from -r requirements.txt (line 49)) Using cached cloudauthz-0.6.0-py2.py3-none-any.whl (8.9 kB) Collecting cloudbridge==3.2.0 (from -r requirements.txt (line 50)) Using cached cloudbridge-3.2.0-py2.py3-none-any.whl.metadata (5.0 kB) Collecting coloredlogs==15.0.1 (from -r requirements.txt (line 52)) Using cached coloredlogs-15.0.1-py2.py3-none-any.whl (46 kB) Collecting conda-package-streaming==0.9.0 (from -r requirements.txt (line 53)) Using cached conda_package_streaming-0.9.0-py3-none-any.whl.metadata (4.5 kB) Collecting cryptography==41.0.5 (from -r requirements.txt (line 54)) Using cached cryptography-41.0.5-cp37-abi3-manylinux_2_28_x86_64.whl.metadata (5.2 kB) Collecting cwl-upgrader==1.2.8 (from -r requirements.txt (line 55)) Using cached cwl_upgrader-1.2.8-py3-none-any.whl.metadata (2.5 kB) Collecting cwl-utils==0.28 (from -r requirements.txt (line 56)) Using cached cwl_utils-0.28-py3-none-any.whl.metadata (7.1 kB) Collecting cwltool==3.1.20221109155812 (from -r requirements.txt (line 57)) Using cached cwltool-3.1.20221109155812-py3-none-any.whl.metadata (40 kB) Collecting decorator==5.1.1 (from -r requirements.txt (line 58)) Using cached decorator-5.1.1-py3-none-any.whl (9.1 kB) Collecting defusedxml==0.7.1 (from -r requirements.txt (line 59)) Using cached defusedxml-0.7.1-py2.py3-none-any.whl (25 kB) Collecting deprecation==2.1.0 (from -r requirements.txt (line 60)) Using cached deprecation-2.1.0-py2.py3-none-any.whl (11 kB) Collecting dictobj==0.4 (from -r requirements.txt (line 61)) Using cached dictobj-0.4-py3-none-any.whl Collecting dnspython==2.3.0 (from -r requirements.txt (line 62)) Using cached dnspython-2.3.0-py3-none-any.whl.metadata (5.2 kB) Collecting docopt==0.6.2 (from -r requirements.txt (line 63)) Using cached https://wheels.galaxyproject.org/simple/docopt/docopt-0.6.2-py2.py3-none-any.whl (19 kB) Collecting docutils==0.18.1 (from -r requirements.txt (line 64)) Using cached docutils-0.18.1-py2.py3-none-any.whl (570 kB) Collecting dparse==0.6.3 (from -r requirements.txt (line 65)) Using cached dparse-0.6.3-py3-none-any.whl.metadata (7.4 kB) Collecting ecdsa==0.18.0 (from -r requirements.txt (line 66)) Using cached ecdsa-0.18.0-py2.py3-none-any.whl.metadata (29 kB) Collecting edam-ontology==1.25.2 (from -r requirements.txt (line 67)) Using cached edam_ontology-1.25.2-py2.py3-none-any.whl (262 kB) Collecting email-validator==2.0.0.post2 (from -r requirements.txt (line 68)) Using cached email_validator-2.0.0.post2-py3-none-any.whl.metadata (25 kB) Collecting exceptiongroup==1.2.0 (from -r requirements.txt (line 69)) Using cached exceptiongroup-1.2.0-py3-none-any.whl.metadata (6.6 kB) Collecting fastapi-utils==0.2.1 (from -r requirements.txt (line 70)) Using cached fastapi_utils-0.2.1-py3-none-any.whl (16 kB) Collecting fastapi==0.98.0 (from -r requirements.txt (line 71)) Using cached fastapi-0.98.0-py3-none-any.whl.metadata (22 kB) Collecting filelock==3.12.2 (from -r requirements.txt (line 72)) Using cached filelock-3.12.2-py3-none-any.whl.metadata (2.7 kB) Collecting frozenlist==1.3.3 (from -r requirements.txt (line 73)) Using cached frozenlist-1.3.3-cp37-cp37m-manylinux_2_5_x86_64.manylinux1_x86_64.manylinux_2_17_x86_64.manylinux2014_x86_64.whl.metadata (4.7 kB) Collecting fs==2.4.16 (from -r requirements.txt (line 74)) Using cached fs-2.4.16-py2.py3-none-any.whl.metadata (6.3 kB) Collecting fsspec==2023.1.0 (from -r requirements.txt (line 75)) Using cached fsspec-2023.1.0-py3-none-any.whl.metadata (5.5 kB) Collecting future==0.18.3 (from -r requirements.txt (line 76)) Using cached future-0.18.3-py3-none-any.whl Collecting galaxy-sequence-utils==1.1.5 (from -r requirements.txt (line 77)) Using cached galaxy_sequence_utils-1.1.5-py2.py3-none-any.whl (37 kB) Collecting galaxy2cwl==0.1.4 (from -r requirements.txt (line 78)) Using cached galaxy2cwl-0.1.4-py3-none-any.whl (8.2 kB) Collecting graphene-sqlalchemy==3.0.0b3 (from -r requirements.txt (line 79)) Using cached graphene_sqlalchemy-3.0.0b3-py2.py3-none-any.whl.metadata (4.2 kB) Collecting graphene==3.3 (from -r requirements.txt (line 80)) Using cached graphene-3.3-py2.py3-none-any.whl.metadata (7.7 kB) Collecting graphql-core==3.2.3 (from -r requirements.txt (line 81)) Using cached graphql_core-3.2.3-py3-none-any.whl.metadata (10 kB) Collecting graphql-relay==3.2.0 (from -r requirements.txt (line 82)) Using cached graphql_relay-3.2.0-py3-none-any.whl.metadata (12 kB) Collecting gravity==1.0.4 (from -r requirements.txt (line 83)) Using cached gravity-1.0.4-py3-none-any.whl.metadata (14 kB) Collecting greenlet==2.0.2 (from -r requirements.txt (line 84)) Using cached greenlet-2.0.2-cp37-cp37m-manylinux_2_17_x86_64.manylinux2014_x86_64.whl.metadata (4.1 kB) Collecting gunicorn==21.2.0 (from -r requirements.txt (line 85)) Using cached gunicorn-21.2.0-py3-none-any.whl.metadata (4.1 kB) Collecting gxformat2==0.18.0 (from -r requirements.txt (line 86)) Using cached gxformat2-0.18.0-py2.py3-none-any.whl.metadata (11 kB) Collecting h11==0.14.0 (from -r requirements.txt (line 87)) Using cached h11-0.14.0-py3-none-any.whl.metadata (8.2 kB) Collecting h5grove==1.3.0 (from -r requirements.txt (line 88)) Using cached h5grove-1.3.0-py3-none-any.whl.metadata (3.4 kB) Collecting h5py==3.8.0 (from -r requirements.txt (line 89)) Using cached h5py-3.8.0-cp37-cp37m-manylinux_2_17_x86_64.manylinux2014_x86_64.whl.metadata (2.5 kB) Collecting humanfriendly==10.0 (from -r requirements.txt (line 90)) Using cached humanfriendly-10.0-py2.py3-none-any.whl (86 kB) Collecting idna==3.5 (from -r requirements.txt (line 91)) Using cached idna-3.5-py3-none-any.whl.metadata (9.9 kB) Collecting importlib-metadata==4.13.0 (from -r requirements.txt (line 92)) Using cached importlib_metadata-4.13.0-py3-none-any.whl.metadata (4.9 kB) Collecting importlib-resources==5.12.0 (from -r requirements.txt (line 93)) Using cached importlib_resources-5.12.0-py3-none-any.whl.metadata (4.1 kB) Collecting isa-rwval==0.10.10 (from -r requirements.txt (line 94)) Using cached isa_rwval-0.10.10-py2.py3-none-any.whl (50 kB) Collecting isal==1.3.0 (from -r requirements.txt (line 95)) Using cached isal-1.3.0-cp37-cp37m-manylinux_2_17_x86_64.manylinux2014_x86_64.whl.metadata (8.7 kB) Collecting isodate==0.6.1 (from -r requirements.txt (line 96)) Using cached isodate-0.6.1-py2.py3-none-any.whl (41 kB) Collecting jinja2==3.1.2 (from -r requirements.txt (line 97)) Using cached Jinja2-3.1.2-py3-none-any.whl.metadata (3.5 kB) Collecting jmespath==1.0.1 (from -r requirements.txt (line 98)) Using cached jmespath-1.0.1-py3-none-any.whl.metadata (7.6 kB) Collecting jsonref==1.1.0 (from -r requirements.txt (line 99)) Using cached jsonref-1.1.0-py3-none-any.whl.metadata (2.7 kB) Collecting jsonschema==4.17.3 (from -r requirements.txt (line 100)) Using cached jsonschema-4.17.3-py3-none-any.whl.metadata (7.9 kB) Collecting kombu==5.2.4 (from -r requirements.txt (line 101)) Using cached kombu-5.2.4-py3-none-any.whl.metadata (2.7 kB) Collecting lagom==2.6.0 (from -r requirements.txt (line 103)) Using cached lagom-2.6.0-py3-none-any.whl.metadata (6.6 kB) Collecting lxml==4.9.3 (from -r requirements.txt (line 104)) Using cached lxml-4.9.3-cp37-cp37m-manylinux_2_28_x86_64.whl.metadata (3.8 kB) Collecting mako==1.2.4 (from -r requirements.txt (line 105)) Using cached Mako-1.2.4-py3-none-any.whl.metadata (2.9 kB) Collecting markdown-it-py==2.2.0 (from -r requirements.txt (line 106)) Using cached markdown_it_py-2.2.0-py3-none-any.whl.metadata (6.8 kB) Collecting markdown==3.4.4 (from -r requirements.txt (line 107)) Using cached Markdown-3.4.4-py3-none-any.whl.metadata (6.9 kB) Collecting markupsafe==2.1.3 (from -r requirements.txt (line 108)) Using cached MarkupSafe-2.1.3-cp37-cp37m-manylinux_2_17_x86_64.manylinux2014_x86_64.whl.metadata (3.0 kB) Collecting mdurl==0.1.2 (from -r requirements.txt (line 109)) Using cached mdurl-0.1.2-py3-none-any.whl.metadata (1.6 kB) Collecting mercurial==6.6 (from -r requirements.txt (line 110)) Using cached https://wheels.galaxyproject.org/simple/mercurial/mercurial-6.6-cp37-cp37m-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (5.2 MB) Collecting mistune==2.0.5 (from -r requirements.txt (line 111)) Using cached mistune-2.0.5-py2.py3-none-any.whl.metadata (1.5 kB) Collecting mrcfile==1.4.3 (from -r requirements.txt (line 112)) Using cached mrcfile-1.4.3-py2.py3-none-any.whl.metadata (6.8 kB) Collecting msal==1.25.0 (from -r requirements.txt (line 113)) Using cached msal-1.25.0-py2.py3-none-any.whl.metadata (11 kB) Collecting msgpack==1.0.5 (from -r requirements.txt (line 114)) Using cached msgpack-1.0.5-cp37-cp37m-manylinux_2_17_x86_64.manylinux2014_x86_64.whl.metadata (8.8 kB) Collecting multidict==6.0.4 (from -r requirements.txt (line 115)) Using cached multidict-6.0.4-cp37-cp37m-manylinux_2_17_x86_64.manylinux2014_x86_64.whl.metadata (4.1 kB) Collecting mypy-extensions==1.0.0 (from -r requirements.txt (line 116)) Using cached mypy_extensions-1.0.0-py3-none-any.whl.metadata (1.1 kB) Collecting networkx==2.5 (from -r requirements.txt (line 117)) Using cached networkx-2.5-py3-none-any.whl (1.6 MB) Collecting nodeenv==1.8.0 (from -r requirements.txt (line 118)) Using cached nodeenv-1.8.0-py2.py3-none-any.whl.metadata (21 kB) Collecting numpy==1.21.6 (from -r requirements.txt (line 119)) Using cached numpy-1.21.6-cp37-cp37m-manylinux_2_12_x86_64.manylinux2010_x86_64.whl.metadata (2.1 kB) Collecting oauthlib==3.2.2 (from -r requirements.txt (line 122)) Using cached oauthlib-3.2.2-py3-none-any.whl.metadata (7.5 kB) Collecting orjson==3.9.7 (from -r requirements.txt (line 123)) Using cached orjson-3.9.7-cp37-cp37m-manylinux_2_17_x86_64.manylinux2014_x86_64.whl.metadata (49 kB) Collecting oyaml==1.0 (from -r requirements.txt (line 124)) Using cached oyaml-1.0-py2.py3-none-any.whl (3.0 kB) Collecting packaging==23.2 (from -r requirements.txt (line 125)) Using cached packaging-23.2-py3-none-any.whl.metadata (3.2 kB) Collecting paramiko==3.3.1 (from -r requirements.txt (line 126)) Using cached paramiko-3.3.1-py3-none-any.whl.metadata (4.4 kB) Collecting parsley==1.3 (from -r requirements.txt (line 127)) Using cached Parsley-1.3-py2.py3-none-any.whl (88 kB) Collecting paste==3.7.1 (from -r requirements.txt (line 128)) Using cached Paste-3.7.1-py3-none-any.whl.metadata (4.9 kB) Collecting pastedeploy==3.1.0 (from -r requirements.txt (line 129)) Using cached PasteDeploy-3.1.0-py3-none-any.whl.metadata (2.7 kB) Collecting pebble==5.0.4 (from -r requirements.txt (line 130)) Using cached Pebble-5.0.4-py3-none-any.whl.metadata (3.6 kB) Collecting pkgutil-resolve-name==1.3.10 (from -r requirements.txt (line 131)) Using cached pkgutil_resolve_name-1.3.10-py3-none-any.whl (4.7 kB) Collecting promise==2.3 (from -r requirements.txt (line 132)) Using cached promise-2.3-py3-none-any.whl Collecting prompt-toolkit==3.0.41 (from -r requirements.txt (line 133)) Using cached prompt_toolkit-3.0.41-py3-none-any.whl.metadata (6.5 kB) Collecting prov==1.5.1 (from -r requirements.txt (line 134)) Using cached prov-1.5.1-py2.py3-none-any.whl (426 kB) Collecting psutil==5.9.6 (from -r requirements.txt (line 135)) Using cached psutil-5.9.6-cp36-abi3-manylinux_2_12_x86_64.manylinux2010_x86_64.manylinux_2_17_x86_64.manylinux2014_x86_64.whl.metadata (21 kB) Collecting pulsar-galaxy-lib==0.15.5 (from -r requirements.txt (line 136)) Using cached pulsar_galaxy_lib-0.15.5-py2.py3-none-any.whl.metadata (33 kB) Collecting pyasn1==0.5.1 (from -r requirements.txt (line 137)) Using cached pyasn1-0.5.1-py2.py3-none-any.whl.metadata (8.6 kB) Collecting pycparser==2.21 (from -r requirements.txt (line 138)) Using cached pycparser-2.21-py2.py3-none-any.whl (118 kB) Collecting pycryptodome==3.19.0 (from -r requirements.txt (line 139)) Using cached pycryptodome-3.19.0-cp35-abi3-manylinux_2_17_x86_64.manylinux2014_x86_64.whl.metadata (3.4 kB) Collecting pydantic-tes==0.1.5 (from -r requirements.txt (line 140)) Using cached pydantic_tes-0.1.5-py2.py3-none-any.whl.metadata (2.9 kB) Collecting pydantic==1.10.13 (from -r requirements.txt (line 141)) Using cached pydantic-1.10.13-cp37-cp37m-manylinux_2_17_x86_64.manylinux2014_x86_64.whl.metadata (149 kB) Collecting pydot==1.4.2 (from -r requirements.txt (line 143)) Using cached pydot-1.4.2-py2.py3-none-any.whl (21 kB) Collecting pyeventsystem==0.1.0 (from -r requirements.txt (line 144)) Using cached pyeventsystem-0.1.0-py2.py3-none-any.whl (15 kB) Collecting pyfaidx==0.7.2.2 (from -r requirements.txt (line 145)) Using cached pyfaidx-0.7.2.2-py3-none-any.whl.metadata (25 kB) Collecting pygments==2.17.2 (from -r requirements.txt (line 146)) Using cached pygments-2.17.2-py3-none-any.whl.metadata (2.6 kB) Collecting pyjwt==2.8.0 (from -r requirements.txt (line 147)) Using cached PyJWT-2.8.0-py3-none-any.whl.metadata (4.2 kB) Collecting pykwalify==1.8.0 (from -r requirements.txt (line 149)) Using cached pykwalify-1.8.0-py2.py3-none-any.whl (24 kB) Collecting pylibmagic==0.5.0 (from -r requirements.txt (line 150)) Using cached pylibmagic-0.5.0-py3-none-manylinux_2_17_x86_64.manylinux2014_x86_64.whl.metadata (5.5 kB) Collecting pynacl==1.5.0 (from -r requirements.txt (line 151)) Using cached PyNaCl-1.5.0-cp36-abi3-manylinux_2_17_x86_64.manylinux2014_x86_64.manylinux_2_24_x86_64.whl (856 kB) Collecting pyparsing==3.0.9 (from -r requirements.txt (line 152)) Using cached pyparsing-3.0.9-py3-none-any.whl.metadata (4.2 kB) Collecting pyrsistent==0.19.3 (from -r requirements.txt (line 155)) Using cached pyrsistent-0.19.3-py3-none-any.whl.metadata (27 kB) Collecting pysam==0.22.0 (from -r requirements.txt (line 156)) Using cached pysam-0.22.0-cp37-cp37m-manylinux_2_28_x86_64.whl.metadata (1.5 kB) Collecting python-dateutil==2.8.2 (from -r requirements.txt (line 157)) Using cached python_dateutil-2.8.2-py2.py3-none-any.whl (247 kB) Collecting python-jose==3.3.0 (from -r requirements.txt (line 158)) Using cached python_jose-3.3.0-py2.py3-none-any.whl (33 kB) Collecting python-magic==0.4.27 (from -r requirements.txt (line 159)) Using cached python_magic-0.4.27-py2.py3-none-any.whl.metadata (5.8 kB) Collecting python-multipart==0.0.7 (from -r requirements.txt (line 160)) Using cached python_multipart-0.0.7-py3-none-any.whl.metadata (2.5 kB) Collecting python3-openid==3.2.0 (from -r requirements.txt (line 161)) Using cached python3_openid-3.2.0-py3-none-any.whl (133 kB) Collecting pytz==2023.3.post1 (from -r requirements.txt (line 162)) Using cached pytz-2023.3.post1-py2.py3-none-any.whl.metadata (22 kB) Collecting pyyaml==6.0.1 (from -r requirements.txt (line 163)) Using cached PyYAML-6.0.1-cp37-cp37m-manylinux_2_17_x86_64.manylinux2014_x86_64.whl.metadata (2.1 kB) Collecting pyzmq==25.1.1 (from -r requirements.txt (line 164)) Using cached pyzmq-25.1.1-cp37-cp37m-manylinux_2_5_x86_64.manylinux1_x86_64.whl.metadata (4.9 kB) Collecting rdflib==6.2.0 (from -r requirements.txt (line 165)) Using cached rdflib-6.2.0-py3-none-any.whl.metadata (10 kB) Collecting refgenconf==0.12.2 (from -r requirements.txt (line 166)) Using cached refgenconf-0.12.2-py3-none-any.whl (72 kB) Collecting regex==2023.10.3 (from -r requirements.txt (line 167)) Using cached regex-2023.10.3-cp37-cp37m-manylinux_2_17_x86_64.manylinux2014_x86_64.whl.metadata (40 kB) Collecting repoze-lru==0.7 (from -r requirements.txt (line 168)) Using cached repoze.lru-0.7-py3-none-any.whl (10 kB) Collecting requests-oauthlib==1.3.1 (from -r requirements.txt (line 169)) Using cached requests_oauthlib-1.3.1-py2.py3-none-any.whl.metadata (10 kB) Collecting requests-toolbelt==1.0.0 (from -r requirements.txt (line 170)) Using cached requests_toolbelt-1.0.0-py2.py3-none-any.whl.metadata (14 kB) Collecting requests-unixsocket==0.3.0 (from -r requirements.txt (line 171)) Using cached requests_unixsocket-0.3.0-py2.py3-none-any.whl (11 kB) Collecting requests==2.31.0 (from -r requirements.txt (line 172)) Using cached requests-2.31.0-py3-none-any.whl.metadata (4.6 kB) Collecting rich==13.7.0 (from -r requirements.txt (line 173)) Using cached rich-13.7.0-py3-none-any.whl.metadata (18 kB) Collecting rocrate==0.9.0 (from -r requirements.txt (line 174)) Using cached rocrate-0.9.0-py3-none-any.whl.metadata (15 kB) Collecting routes==2.5.1 (from -r requirements.txt (line 175)) Using cached Routes-2.5.1-py2.py3-none-any.whl (40 kB) Collecting rsa==4.9 (from -r requirements.txt (line 176)) Using cached rsa-4.9-py3-none-any.whl.metadata (4.2 kB) Collecting ruamel-yaml-clib==0.2.8 (from -r requirements.txt (line 177)) Using cached ruamel.yaml.clib-0.2.8-cp37-cp37m-manylinux_2_5_x86_64.manylinux1_x86_64.whl.metadata (2.2 kB) Collecting ruamel-yaml==0.17.21 (from -r requirements.txt (line 178)) Using cached ruamel.yaml-0.17.21-py3-none-any.whl.metadata (13 kB) Collecting s3fs==2023.1.0 (from -r requirements.txt (line 179)) Using cached s3fs-2023.1.0-py3-none-any.whl.metadata (1.5 kB) Collecting schema-salad==8.4.20230808163024 (from -r requirements.txt (line 180)) Using cached schema_salad-8.4.20230808163024-cp37-cp37m-manylinux_2_17_x86_64.manylinux2014_x86_64.manylinux_2_28_x86_64.whl.metadata (16 kB) Collecting setuptools-scm==5.0.2 (from -r requirements.txt (line 181)) Using cached setuptools_scm-5.0.2-py2.py3-none-any.whl (29 kB) Requirement already satisfied: setuptools==68.0.0 in /scratch/rico/.planemo/gx_venv_3/lib/python3.7/site-packages (from -r requirements.txt (line 182)) (68.0.0) Collecting shellescape==3.8.1 (from -r requirements.txt (line 183)) Using cached shellescape-3.8.1-py2.py3-none-any.whl (3.1 kB) Collecting six==1.16.0 (from -r requirements.txt (line 184)) Using cached six-1.16.0-py2.py3-none-any.whl (11 kB) Collecting sniffio==1.3.0 (from -r requirements.txt (line 185)) Using cached sniffio-1.3.0-py3-none-any.whl.metadata (3.6 kB) Collecting social-auth-core==4.0.3 (from social-auth-core[openidconnect]==4.0.3->-r requirements.txt (line 186)) Using cached social_auth_core-4.0.3-py3-none-any.whl (328 kB) Collecting sortedcontainers==2.4.0 (from -r requirements.txt (line 187)) Using cached sortedcontainers-2.4.0-py2.py3-none-any.whl (29 kB) Collecting sqlalchemy==1.4.50 (from -r requirements.txt (line 188)) Using cached SQLAlchemy-1.4.50-cp37-cp37m-manylinux_2_5_x86_64.manylinux1_x86_64.manylinux_2_17_x86_64.manylinux2014_x86_64.whl.metadata (10.0 kB) Collecting sqlitedict==2.1.0 (from -r requirements.txt (line 189)) Using cached sqlitedict-2.1.0-py3-none-any.whl Collecting sqlparse==0.4.4 (from -r requirements.txt (line 190)) Using cached sqlparse-0.4.4-py3-none-any.whl.metadata (4.0 kB) Collecting starlette-context==0.3.5 (from -r requirements.txt (line 191)) Using cached starlette_context-0.3.5-py37-none-any.whl.metadata (3.6 kB) Collecting starlette-graphene3==0.6.0 (from -r requirements.txt (line 192)) Using cached starlette_graphene3-0.6.0-py3-none-any.whl.metadata (4.2 kB) Collecting starlette==0.27.0 (from -r requirements.txt (line 193)) Using cached starlette-0.27.0-py3-none-any.whl.metadata (5.8 kB) Collecting supervisor==4.2.5 (from -r requirements.txt (line 194)) Using cached supervisor-4.2.5-py2.py3-none-any.whl.metadata (86 kB) Collecting svgwrite==1.4.3 (from -r requirements.txt (line 195)) Using cached svgwrite-1.4.3-py3-none-any.whl.metadata (8.8 kB) Collecting tenacity==8.2.3 (from -r requirements.txt (line 196)) Using cached tenacity-8.2.3-py3-none-any.whl.metadata (1.0 kB) Collecting tifffile==2021.11.2 (from -r requirements.txt (line 197)) Using cached tifffile-2021.11.2-py3-none-any.whl (178 kB) Collecting tinydb==4.8.0 (from -r requirements.txt (line 198)) Using cached tinydb-4.8.0-py3-none-any.whl.metadata (6.2 kB) Collecting tomli==2.0.1 (from -r requirements.txt (line 199)) Using cached tomli-2.0.1-py3-none-any.whl.metadata (8.9 kB) Collecting tornado==6.2 (from -r requirements.txt (line 200)) Using cached tornado-6.2-cp37-abi3-manylinux_2_5_x86_64.manylinux1_x86_64.manylinux_2_17_x86_64.manylinux2014_x86_64.whl.metadata (2.5 kB) Collecting tqdm==4.66.1 (from -r requirements.txt (line 201)) Using cached tqdm-4.66.1-py3-none-any.whl.metadata (57 kB) Collecting tuspy==1.0.1 (from -r requirements.txt (line 202)) Using cached tuspy-1.0.1-py3-none-any.whl.metadata (3.5 kB) Collecting tuswsgi==0.5.5 (from -r requirements.txt (line 203)) Using cached tuswsgi-0.5.5-py2.py3-none-any.whl.metadata (2.2 kB) Collecting typing-extensions==4.7.1 (from -r requirements.txt (line 204)) Using cached typing_extensions-4.7.1-py3-none-any.whl.metadata (3.1 kB) Collecting tzlocal==5.1 (from -r requirements.txt (line 206)) Using cached tzlocal-5.1-py3-none-any.whl.metadata (16 kB) Collecting ubiquerg==0.6.3 (from -r requirements.txt (line 207)) Using cached ubiquerg-0.6.3-py2.py3-none-any.whl.metadata (1.9 kB) Collecting urllib3==1.26.18 (from -r requirements.txt (line 208)) Using cached urllib3-1.26.18-py2.py3-none-any.whl.metadata (48 kB) Collecting uvicorn==0.22.0 (from -r requirements.txt (line 209)) Using cached uvicorn-0.22.0-py3-none-any.whl.metadata (6.3 kB) Collecting uvloop==0.18.0 (from -r requirements.txt (line 210)) Using cached uvloop-0.18.0-cp37-cp37m-manylinux_2_17_x86_64.manylinux2014_x86_64.whl.metadata (4.9 kB) Collecting vine==5.1.0 (from -r requirements.txt (line 211)) Using cached vine-5.1.0-py3-none-any.whl.metadata (2.7 kB) Collecting wcwidth==0.2.12 (from -r requirements.txt (line 212)) Using cached wcwidth-0.2.12-py2.py3-none-any.whl.metadata (14 kB) Collecting webencodings==0.5.1 (from -r requirements.txt (line 213)) Using cached webencodings-0.5.1-py2.py3-none-any.whl (11 kB) Collecting webob==1.8.7 (from -r requirements.txt (line 214)) Using cached WebOb-1.8.7-py2.py3-none-any.whl (114 kB) Collecting whoosh==2.7.4 (from -r requirements.txt (line 215)) Using cached Whoosh-2.7.4-py2.py3-none-any.whl (468 kB) Collecting wrapt==1.16.0 (from -r requirements.txt (line 216)) Using cached wrapt-1.16.0-cp37-cp37m-manylinux_2_5_x86_64.manylinux1_x86_64.manylinux_2_17_x86_64.manylinux2014_x86_64.whl.metadata (6.6 kB) Collecting yacman==0.9.2 (from -r requirements.txt (line 217)) Using cached yacman-0.9.2-py3-none-any.whl.metadata (1.8 kB) Collecting yarl==1.9.3 (from -r requirements.txt (line 218)) Using cached yarl-1.9.3-cp37-cp37m-manylinux_2_17_x86_64.manylinux2014_x86_64.whl.metadata (28 kB) Collecting zipp==3.15.0 (from -r requirements.txt (line 219)) Using cached zipp-3.15.0-py3-none-any.whl.metadata (3.7 kB) Collecting zipstream-new==1.1.8 (from -r requirements.txt (line 220)) Using cached zipstream_new-1.1.8-py3-none-any.whl (20 kB) Collecting zstandard==0.21.0 (from -r requirements.txt (line 221)) Using cached zstandard-0.21.0-cp37-cp37m-manylinux_2_17_x86_64.manylinux2014_x86_64.whl.metadata (2.9 kB) Using cached a2wsgi-1.7.0-py3-none-any.whl (11 kB) Using cached aiobotocore-2.4.2-py3-none-any.whl (66 kB) Using cached aiodataloader-0.4.0-py3-none-any.whl (10 kB) Using cached aiofiles-23.2.1-py3-none-any.whl (15 kB) Using cached aiohttp-3.8.6-cp37-cp37m-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (987 kB) Using cached aioitertools-0.11.0-py3-none-any.whl (23 kB) Using cached aiosignal-1.3.1-py3-none-any.whl (7.6 kB) Using cached alembic-1.12.1-py3-none-any.whl (226 kB) Using cached amqp-5.2.0-py3-none-any.whl (50 kB) Using cached anyio-3.7.1-py3-none-any.whl (80 kB) Using cached apispec-6.3.0-py3-none-any.whl (29 kB) Using cached argcomplete-3.1.2-py3-none-any.whl (41 kB) Using cached async_timeout-4.0.3-py3-none-any.whl (5.7 kB) Using cached attrs-23.1.0-py3-none-any.whl (61 kB) Using cached Babel-2.13.1-py3-none-any.whl (10.1 MB) Using cached bcrypt-4.0.1-cp36-abi3-manylinux_2_28_x86_64.whl (593 kB) Using cached bdbag-1.7.1-py2.py3-none-any.whl (72 kB) Using cached bioblend-1.2.0-py2.py3-none-any.whl (156 kB) Using cached bleach-6.0.0-py3-none-any.whl (162 kB) Using cached boltons-23.1.1-py2.py3-none-any.whl (195 kB) Using cached botocore-1.27.59-py3-none-any.whl (9.1 MB) Using cached bx_python-0.10.0-cp37-cp37m-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (5.1 MB) Using cached cachecontrol-0.13.1-py3-none-any.whl (22 kB) Using cached celery-5.2.7-py3-none-any.whl (405 kB) Using cached certifi-2023.11.17-py3-none-any.whl (162 kB) Using cached cffi-1.15.1-cp37-cp37m-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (427 kB) Using cached charset_normalizer-3.3.2-cp37-cp37m-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (136 kB) Using cached circus-0.18.0-py3-none-any.whl (200 kB) Using cached click_repl-0.3.0-py3-none-any.whl (10 kB) Using cached click-8.1.7-py3-none-any.whl (97 kB) Using cached cloudbridge-3.2.0-py2.py3-none-any.whl (193 kB) Using cached conda_package_streaming-0.9.0-py3-none-any.whl (15 kB) Using cached cryptography-41.0.5-cp37-abi3-manylinux_2_28_x86_64.whl (4.4 MB) Using cached cwl_upgrader-1.2.8-py3-none-any.whl (27 kB) Using cached cwl_utils-0.28-py3-none-any.whl (313 kB) Using cached cwltool-3.1.20221109155812-py3-none-any.whl (1.3 MB) Using cached dnspython-2.3.0-py3-none-any.whl (283 kB) Using cached dparse-0.6.3-py3-none-any.whl (12 kB) Using cached ecdsa-0.18.0-py2.py3-none-any.whl (142 kB) Using cached email_validator-2.0.0.post2-py3-none-any.whl (31 kB) Using cached exceptiongroup-1.2.0-py3-none-any.whl (16 kB) Using cached fastapi-0.98.0-py3-none-any.whl (56 kB) Using cached filelock-3.12.2-py3-none-any.whl (10 kB) Using cached frozenlist-1.3.3-cp37-cp37m-manylinux_2_5_x86_64.manylinux1_x86_64.manylinux_2_17_x86_64.manylinux2014_x86_64.whl (148 kB) Using cached fs-2.4.16-py2.py3-none-any.whl (135 kB) Using cached fsspec-2023.1.0-py3-none-any.whl (143 kB) Using cached graphene_sqlalchemy-3.0.0b3-py2.py3-none-any.whl (45 kB) Using cached graphene-3.3-py2.py3-none-any.whl (128 kB) Using cached graphql_core-3.2.3-py3-none-any.whl (202 kB) Using cached graphql_relay-3.2.0-py3-none-any.whl (16 kB) Using cached gravity-1.0.4-py3-none-any.whl (44 kB) Using cached greenlet-2.0.2-cp37-cp37m-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (566 kB) Using cached gunicorn-21.2.0-py3-none-any.whl (80 kB) Using cached gxformat2-0.18.0-py2.py3-none-any.whl (53 kB) Using cached h11-0.14.0-py3-none-any.whl (58 kB) Using cached h5grove-1.3.0-py3-none-any.whl (15 kB) Using cached h5py-3.8.0-cp37-cp37m-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (4.3 MB) Using cached idna-3.5-py3-none-any.whl (61 kB) Using cached importlib_metadata-4.13.0-py3-none-any.whl (23 kB) Using cached importlib_resources-5.12.0-py3-none-any.whl (36 kB) Using cached isal-1.3.0-cp37-cp37m-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (250 kB) Using cached Jinja2-3.1.2-py3-none-any.whl (133 kB) Using cached jmespath-1.0.1-py3-none-any.whl (20 kB) Using cached jsonref-1.1.0-py3-none-any.whl (9.4 kB) Using cached jsonschema-4.17.3-py3-none-any.whl (90 kB) Using cached kombu-5.2.4-py3-none-any.whl (189 kB) Using cached lagom-2.6.0-py3-none-any.whl (36 kB) Using cached lxml-4.9.3-cp37-cp37m-manylinux_2_28_x86_64.whl (7.4 MB) Using cached Mako-1.2.4-py3-none-any.whl (78 kB) Using cached markdown_it_py-2.2.0-py3-none-any.whl (84 kB) Using cached Markdown-3.4.4-py3-none-any.whl (94 kB) Using cached MarkupSafe-2.1.3-cp37-cp37m-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (25 kB) Using cached mdurl-0.1.2-py3-none-any.whl (10.0 kB) Using cached mistune-2.0.5-py2.py3-none-any.whl (24 kB) Using cached mrcfile-1.4.3-py2.py3-none-any.whl (43 kB) Using cached msal-1.25.0-py2.py3-none-any.whl (97 kB) Using cached msgpack-1.0.5-cp37-cp37m-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (299 kB) Using cached multidict-6.0.4-cp37-cp37m-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (94 kB) Using cached mypy_extensions-1.0.0-py3-none-any.whl (4.7 kB) Using cached nodeenv-1.8.0-py2.py3-none-any.whl (22 kB) Using cached numpy-1.21.6-cp37-cp37m-manylinux_2_12_x86_64.manylinux2010_x86_64.whl (15.7 MB) Using cached oauthlib-3.2.2-py3-none-any.whl (151 kB) Using cached orjson-3.9.7-cp37-cp37m-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (138 kB) Using cached packaging-23.2-py3-none-any.whl (53 kB) Using cached paramiko-3.3.1-py3-none-any.whl (224 kB) Using cached Paste-3.7.1-py3-none-any.whl (281 kB) Using cached PasteDeploy-3.1.0-py3-none-any.whl (16 kB) Using cached Pebble-5.0.4-py3-none-any.whl (30 kB) Using cached prompt_toolkit-3.0.41-py3-none-any.whl (385 kB) Using cached psutil-5.9.6-cp36-abi3-manylinux_2_12_x86_64.manylinux2010_x86_64.manylinux_2_17_x86_64.manylinux2014_x86_64.whl (283 kB) Using cached pulsar_galaxy_lib-0.15.5-py2.py3-none-any.whl (200 kB) Using cached pyasn1-0.5.1-py2.py3-none-any.whl (84 kB) Using cached pycryptodome-3.19.0-cp35-abi3-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (2.1 MB) Using cached pydantic_tes-0.1.5-py2.py3-none-any.whl (12 kB) Using cached pydantic-1.10.13-cp37-cp37m-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (3.1 MB) Using cached pyfaidx-0.7.2.2-py3-none-any.whl (28 kB) Using cached pygments-2.17.2-py3-none-any.whl (1.2 MB) Using cached PyJWT-2.8.0-py3-none-any.whl (22 kB) Using cached pylibmagic-0.5.0-py3-none-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (619 kB) Using cached pyparsing-3.0.9-py3-none-any.whl (98 kB) Using cached pyrsistent-0.19.3-py3-none-any.whl (57 kB) Using cached pysam-0.22.0-cp37-cp37m-manylinux_2_28_x86_64.whl (23.6 MB) Using cached python_magic-0.4.27-py2.py3-none-any.whl (13 kB) Using cached python_multipart-0.0.7-py3-none-any.whl (22 kB) Using cached pytz-2023.3.post1-py2.py3-none-any.whl (502 kB) Using cached PyYAML-6.0.1-cp37-cp37m-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (670 kB) Using cached pyzmq-25.1.1-cp37-cp37m-manylinux_2_5_x86_64.manylinux1_x86_64.whl (1.1 MB) Using cached rdflib-6.2.0-py3-none-any.whl (500 kB) Using cached regex-2023.10.3-cp37-cp37m-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (761 kB) Using cached requests_oauthlib-1.3.1-py2.py3-none-any.whl (23 kB) Using cached requests_toolbelt-1.0.0-py2.py3-none-any.whl (54 kB) Using cached requests-2.31.0-py3-none-any.whl (62 kB) Using cached rich-13.7.0-py3-none-any.whl (240 kB) Using cached rocrate-0.9.0-py3-none-any.whl (325 kB) Using cached rsa-4.9-py3-none-any.whl (34 kB) Using cached ruamel.yaml.clib-0.2.8-cp37-cp37m-manylinux_2_5_x86_64.manylinux1_x86_64.whl (551 kB) Using cached ruamel.yaml-0.17.21-py3-none-any.whl (109 kB) Using cached s3fs-2023.1.0-py3-none-any.whl (27 kB) Using cached schema_salad-8.4.20230808163024-cp37-cp37m-manylinux_2_17_x86_64.manylinux2014_x86_64.manylinux_2_28_x86_64.whl (1.0 MB) Using cached sniffio-1.3.0-py3-none-any.whl (10 kB) Using cached SQLAlchemy-1.4.50-cp37-cp37m-manylinux_2_5_x86_64.manylinux1_x86_64.manylinux_2_17_x86_64.manylinux2014_x86_64.whl (1.6 MB) Using cached sqlparse-0.4.4-py3-none-any.whl (41 kB) Using cached starlette_context-0.3.5-py37-none-any.whl (12 kB) Using cached starlette_graphene3-0.6.0-py3-none-any.whl (9.0 kB) Using cached starlette-0.27.0-py3-none-any.whl (66 kB) Using cached supervisor-4.2.5-py2.py3-none-any.whl (319 kB) Using cached svgwrite-1.4.3-py3-none-any.whl (67 kB) Using cached tenacity-8.2.3-py3-none-any.whl (24 kB) Using cached tinydb-4.8.0-py3-none-any.whl (24 kB) Using cached tomli-2.0.1-py3-none-any.whl (12 kB) Using cached tornado-6.2-cp37-abi3-manylinux_2_5_x86_64.manylinux1_x86_64.manylinux_2_17_x86_64.manylinux2014_x86_64.whl (423 kB) Using cached tqdm-4.66.1-py3-none-any.whl (78 kB) Using cached tuspy-1.0.1-py3-none-any.whl (14 kB) Using cached tuswsgi-0.5.5-py2.py3-none-any.whl (6.9 kB) Using cached typing_extensions-4.7.1-py3-none-any.whl (33 kB) Using cached tzlocal-5.1-py3-none-any.whl (21 kB) Using cached ubiquerg-0.6.3-py2.py3-none-any.whl (13 kB) Using cached urllib3-1.26.18-py2.py3-none-any.whl (143 kB) Using cached uvicorn-0.22.0-py3-none-any.whl (58 kB) Using cached uvloop-0.18.0-cp37-cp37m-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (4.3 MB) Using cached vine-5.1.0-py3-none-any.whl (9.6 kB) Using cached wcwidth-0.2.12-py2.py3-none-any.whl (34 kB) Using cached wrapt-1.16.0-cp37-cp37m-manylinux_2_5_x86_64.manylinux1_x86_64.manylinux_2_17_x86_64.manylinux2014_x86_64.whl (77 kB) Using cached yacman-0.9.2-py3-none-any.whl (18 kB) Using cached yarl-1.9.3-cp37-cp37m-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (288 kB) Using cached zipp-3.15.0-py3-none-any.whl (6.8 kB) Using cached zstandard-0.21.0-cp37-cp37m-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (2.7 MB) Installing collected packages: zipstream-new, whoosh, webencodings, wcwidth, ubiquerg, sqlitedict, sortedcontainers, shellescape, repoze-lru, pytz, pyeventsystem, parsley, msgpack, mistune, mercurial, edam-ontology, docopt, dictobj, cached-property, boto, boltons, billiard, beaker, bagit, arcp, appdirs, aniso8601, zstandard, zipp, wrapt, webob, vine, uvloop, urllib3, typing-extensions, tqdm, tornado, tomli, tinydb, tenacity, svgwrite, supervisor, sqlparse, sniffio, six, setuptools-scm, ruamel-yaml-clib, regex, pyzmq, pyyaml, python-multipart, python-magic, pysam, pyrsistent, pyparsing, pygments, pycryptodome, pycparser, pyasn1, psutil, prompt-toolkit, pkgutil-resolve-name, pebble, packaging, orjson, oauthlib, numpy, nodeenv, mypy-extensions, multidict, mdurl, markupsafe, lxml, lagom, jsonref, jmespath, isal, idna, humanfriendly, greenlet, future, fsspec, frozenlist, filelock, exceptiongroup, docutils, dnspython, defusedxml, decorator, cheetah3, charset-normalizer, certifi, bcrypt, backports-zoneinfo, babel, attmap, asynctest, aiofiles, a2wsgi, yarl, tzlocal, tuswsgi, tifffile, ruamel-yaml, rsa, routes, requests, python3-openid, python-dateutil, pyjwt, pydot, pydantic, promise, paste, oyaml, networkx, mrcfile, markdown-it-py, jinja2, isodate, importlib-resources, importlib-metadata, h5py, h11, graphql-core, galaxy-sequence-utils, fs, email-validator, ecdsa, dparse, deprecation, coloredlogs, circus, cffi, bx-python, bleach, async-timeout, apispec, anyio, amqp, aiosignal, aioitertools, aiodataloader, starlette, sqlalchemy, rich, requests-unixsocket, requests-toolbelt, requests-oauthlib, rdflib, python-jose, pynacl, pylibmagic, pykwalify, pyfaidx, pydantic-tes, pastedeploy, markdown, mako, kombu, isa-rwval, h5grove, gunicorn, graphql-relay, cryptography, conda-package-streaming, cloudbridge, click, cachecontrol, botocore, bagit-profile, attrs, argcomplete, uvicorn, starlette-context, social-auth-core, prov, paramiko, jsonschema, gravity, graphene, fastapi, click-repl, click-plugins, click-didyoumean, bdbag, alembic, aiohttp, adal, yacman, tuspy, starlette-graphene3, schema-salad, pulsar-galaxy-lib, msal, graphene-sqlalchemy, fastapi-utils, cloudauthz, celery, aiobotocore, s3fs, refgenconf, cwl-upgrader, bioblend, gxformat2, cwl-utils, galaxy2cwl, cwltool, rocrate Successfully installed a2wsgi-1.7.0 adal-1.2.7 aiobotocore-2.4.2 aiodataloader-0.4.0 aiofiles-23.2.1 aiohttp-3.8.6 aioitertools-0.11.0 aiosignal-1.3.1 alembic-1.12.1 amqp-5.2.0 aniso8601-9.0.1 anyio-3.7.1 apispec-6.3.0 appdirs-1.4.4 arcp-0.2.1 argcomplete-3.1.2 async-timeout-4.0.3 asynctest-0.13.0 attmap-0.13.2 attrs-23.1.0 babel-2.13.1 backports-zoneinfo-0.2.1 bagit-1.8.1 bagit-profile-1.3.1 bcrypt-4.0.1 bdbag-1.7.1 beaker-1.12.1 billiard-3.6.4.0 bioblend-1.2.0 bleach-6.0.0 boltons-23.1.1 boto-2.49.0 botocore-1.27.59 bx-python-0.10.0 cachecontrol-0.13.1 cached-property-1.5.2 celery-5.2.7 certifi-2023.11.17 cffi-1.15.1 charset-normalizer-3.3.2 cheetah3-3.2.6.post1 circus-0.18.0 click-8.1.7 click-didyoumean-0.3.0 click-plugins-1.1.1 click-repl-0.3.0 cloudauthz-0.6.0 cloudbridge-3.2.0 coloredlogs-15.0.1 conda-package-streaming-0.9.0 cryptography-41.0.5 cwl-upgrader-1.2.8 cwl-utils-0.28 cwltool-3.1.20221109155812 decorator-5.1.1 defusedxml-0.7.1 deprecation-2.1.0 dictobj-0.4 dnspython-2.3.0 docopt-0.6.2 docutils-0.18.1 dparse-0.6.3 ecdsa-0.18.0 edam-ontology-1.25.2 email-validator-2.0.0.post2 exceptiongroup-1.2.0 fastapi-0.98.0 fastapi-utils-0.2.1 filelock-3.12.2 frozenlist-1.3.3 fs-2.4.16 fsspec-2023.1.0 future-0.18.3 galaxy-sequence-utils-1.1.5 galaxy2cwl-0.1.4 graphene-3.3 graphene-sqlalchemy-3.0.0b3 graphql-core-3.2.3 graphql-relay-3.2.0 gravity-1.0.4 greenlet-2.0.2 gunicorn-21.2.0 gxformat2-0.18.0 h11-0.14.0 h5grove-1.3.0 h5py-3.8.0 humanfriendly-10.0 idna-3.5 importlib-metadata-4.13.0 importlib-resources-5.12.0 isa-rwval-0.10.10 isal-1.3.0 isodate-0.6.1 jinja2-3.1.2 jmespath-1.0.1 jsonref-1.1.0 jsonschema-4.17.3 kombu-5.2.4 lagom-2.6.0 lxml-4.9.3 mako-1.2.4 markdown-3.4.4 markdown-it-py-2.2.0 markupsafe-2.1.3 mdurl-0.1.2 mercurial-6.6 mistune-2.0.5 mrcfile-1.4.3 msal-1.25.0 msgpack-1.0.5 multidict-6.0.4 mypy-extensions-1.0.0 networkx-2.5 nodeenv-1.8.0 numpy-1.21.6 oauthlib-3.2.2 orjson-3.9.7 oyaml-1.0 packaging-23.2 paramiko-3.3.1 parsley-1.3 paste-3.7.1 pastedeploy-3.1.0 pebble-5.0.4 pkgutil-resolve-name-1.3.10 promise-2.3 prompt-toolkit-3.0.41 prov-1.5.1 psutil-5.9.6 pulsar-galaxy-lib-0.15.5 pyasn1-0.5.1 pycparser-2.21 pycryptodome-3.19.0 pydantic-1.10.13 pydantic-tes-0.1.5 pydot-1.4.2 pyeventsystem-0.1.0 pyfaidx-0.7.2.2 pygments-2.17.2 pyjwt-2.8.0 pykwalify-1.8.0 pylibmagic-0.5.0 pynacl-1.5.0 pyparsing-3.0.9 pyrsistent-0.19.3 pysam-0.22.0 python-dateutil-2.8.2 python-jose-3.3.0 python-magic-0.4.27 python-multipart-0.0.7 python3-openid-3.2.0 pytz-2023.3.post1 pyyaml-6.0.1 pyzmq-25.1.1 rdflib-6.2.0 refgenconf-0.12.2 regex-2023.10.3 repoze-lru-0.7 requests-2.31.0 requests-oauthlib-1.3.1 requests-toolbelt-1.0.0 requests-unixsocket-0.3.0 rich-13.7.0 rocrate-0.9.0 routes-2.5.1 rsa-4.9 ruamel-yaml-0.17.21 ruamel-yaml-clib-0.2.8 s3fs-2023.1.0 schema-salad-8.4.20230808163024 setuptools-scm-5.0.2 shellescape-3.8.1 six-1.16.0 sniffio-1.3.0 social-auth-core-4.0.3 sortedcontainers-2.4.0 sqlalchemy-1.4.50 sqlitedict-2.1.0 sqlparse-0.4.4 starlette-0.27.0 starlette-context-0.3.5 starlette-graphene3-0.6.0 supervisor-4.2.5 svgwrite-1.4.3 tenacity-8.2.3 tifffile-2021.11.2 tinydb-4.8.0 tomli-2.0.1 tornado-6.2 tqdm-4.66.1 tuspy-1.0.1 tuswsgi-0.5.5 typing-extensions-4.7.1 tzlocal-5.1 ubiquerg-0.6.3 urllib3-1.26.18 uvicorn-0.22.0 uvloop-0.18.0 vine-5.1.0 wcwidth-0.2.12 webencodings-0.5.1 webob-1.8.7 whoosh-2.7.4 wrapt-1.16.0 yacman-0.9.2 yarl-1.9.3 zipp-3.15.0 zipstream-new-1.1.8 zstandard-0.21.0 [notice] A new release of pip is available: 23.3.2 -> 24.0 [notice] To update, run: pip install --upgrade pip [notice] A new release of pip is available: 23.3.2 -> 24.0 [notice] To update, run: pip install --upgrade pip Looking in indexes: https://wheels.galaxyproject.org/simple, https://pypi.python.org/simple Collecting watchdog (from -r /dev/stdin (line 1)) Using cached watchdog-3.0.0-py3-none-manylinux2014_x86_64.whl.metadata (36 kB) Using cached watchdog-3.0.0-py3-none-manylinux2014_x86_64.whl (82 kB) Installing collected packages: watchdog Successfully installed watchdog-3.0.0 [notice] A new release of pip is available: 23.3.2 -> 24.0 [notice] To update, run: pip install --upgrade pip Installing node into /scratch/rico/.planemo/gx_venv_3 with nodeenv. * Install prebuilt node (18.12.1) ..... done. * Appending data to /scratch/rico/.planemo/gx_venv_3/bin/activate * Appending data to /scratch/rico/.planemo/gx_venv_3/bin/activate.fish The Galaxy client build is up to date and will not be rebuilt at this time. Activating virtualenv at /scratch/rico/.planemo/gx_venv_3 Adding service gunicorn supervisord is not running Adding service celery supervisord is not running Adding service celery-beat supervisord is not running Executing: galaxy 2024-02-23 14:21:29,531 WARN No file matches via include "/tmp/tmpqrlh6ih1/gravity/supervisor/supervisord.conf.d/*.conf" 2024-02-23 14:21:29,531 INFO Included extra file "/tmp/tmpqrlh6ih1/gravity/supervisor/supervisord.conf.d/_default_.d/galaxy_celery-beat_celery-beat.conf" during parsing 2024-02-23 14:21:29,531 INFO Included extra file "/tmp/tmpqrlh6ih1/gravity/supervisor/supervisord.conf.d/_default_.d/galaxy_celery_celery.conf" during parsing 2024-02-23 14:21:29,531 INFO Included extra file "/tmp/tmpqrlh6ih1/gravity/supervisor/supervisord.conf.d/_default_.d/galaxy_gunicorn_gunicorn.conf" during parsing 2024-02-23 14:21:29,535 INFO RPC interface 'supervisor' initialized 2024-02-23 14:21:29,536 CRIT Server 'unix_http_server' running without any HTTP authentication checking 2024-02-23 14:21:29,536 INFO supervisord started with pid 78500 2024-02-23 14:21:29,833 INFO spawned: 'celery' with pid 78503 2024-02-23 14:21:29,836 INFO spawned: 'celery-beat' with pid 78504 2024-02-23 14:21:29,839 INFO spawned: 'gunicorn' with pid 78505 ==> /tmp/tmpqrlh6ih1/gravity/log/gunicorn.log <== ==> /tmp/tmpqrlh6ih1/gravity/log/celery.log <== ==> /tmp/tmpqrlh6ih1/gravity/log/celery-beat.log <== Working directory: /scratch/rico/galaxy Executing: PYTHONPATH=lib GALAXY_CONFIG_FILE=/tmp/tmpqrlh6ih1/galaxy.yml celery --app galaxy.celery beat --loglevel DEBUG --schedule /tmp/tmpqrlh6ih1/gravity/celery-beat-schedule ==> /tmp/tmpqrlh6ih1/gravity/log/celery.log <== Working directory: /scratch/rico/galaxy Executing: PYTHONPATH=lib GALAXY_CONFIG_FILE=/tmp/tmpqrlh6ih1/galaxy.yml celery --app galaxy.celery worker --concurrency 2 --loglevel DEBUG --pool threads --queues celery,galaxy.internal,galaxy.external ==> /tmp/tmpqrlh6ih1/gravity/log/gunicorn.log <== Working directory: /scratch/rico/galaxy Executing: PYTHONPATH=lib GALAXY_CONFIG_FILE=/tmp/tmpqrlh6ih1/galaxy.yml gunicorn 'galaxy.webapps.galaxy.fast_factory:factory()' --timeout 300 --pythonpath lib -k galaxy.webapps.galaxy.workers.Worker -b localhost:9090 --workers=1 --config python:galaxy.web_stack.gunicorn_config --preload ==> /tmp/tmpqrlh6ih1/gravity/log/celery.log <== Option master_api_key has been deprecated in favor of bootstrap_admin_api_key No corresponding location name exists for location code: . ==> /tmp/tmpqrlh6ih1/gravity/log/celery-beat.log <== Option master_api_key has been deprecated in favor of bootstrap_admin_api_key No corresponding location name exists for location code: . ==> /tmp/tmpqrlh6ih1/gravity/log/gunicorn.log <== Option master_api_key has been deprecated in favor of bootstrap_admin_api_key No corresponding location name exists for location code: . DEBUG:yacman.yacman:Patching yaml loader DEBUG:yacman.yacman1:Using yacman version 0.9.2 ==> /tmp/tmpqrlh6ih1/gravity/log/celery.log <== [2024-02-23 14:21:33,665: DEBUG/MainProcess] | Worker: Preparing bootsteps. [2024-02-23 14:21:33,667: DEBUG/MainProcess] | Worker: Building graph... [2024-02-23 14:21:33,668: DEBUG/MainProcess] | Worker: New boot order: {Timer, Hub, Pool, Autoscaler, StateDB, Beat, Consumer} [2024-02-23 14:21:33,673: DEBUG/MainProcess] | Consumer: Preparing bootsteps. [2024-02-23 14:21:33,673: DEBUG/MainProcess] | Consumer: Building graph... [2024-02-23 14:21:33,689: DEBUG/MainProcess] | Consumer: New boot order: {Connection, Events, Mingle, Gossip, Tasks, Control, Agent, Heart, event loop} -------------- celery@laila v5.2.7 (dawn-chorus) --- ***** ----- -- ******* ---- Linux-4.19.0-26-amd64-x86_64-with-debian-10.13 2024-02-23 14:21:33 - *** --- * --- - ** ---------- [config] - ** ---------- .> app: galaxy:0x7f9f17483748 - ** ---------- .> transport: sqlalchemy+sqlite:////tmp/tmpqrlh6ih1/galaxy.sqlite - ** ---------- .> results: disabled:// - *** --- * --- .> concurrency: 2 (thread) -- ******* ---- .> task events: OFF (enable -E to monitor tasks in this worker) --- ***** ----- -------------- [queues] .> celery exchange=celery(direct) key=celery .> galaxy.external exchange=galaxy.external(direct) key=galaxy.external .> galaxy.internal exchange=galaxy.internal(direct) key=galaxy.internal [tasks] . celery.accumulate . celery.backend_cleanup . celery.chain . celery.chord . celery.chord_unlock . celery.chunks . celery.group . celery.map . celery.starmap . galaxy.change_datatype . galaxy.clean_object_store_caches . galaxy.cleanup_expired_notifications . galaxy.cleanup_short_term_storage . galaxy.compute_dataset_hash . galaxy.export_history . galaxy.fetch_data . galaxy.finish_job . galaxy.import_data_bundle . galaxy.import_model_store . galaxy.materialize . galaxy.prepare_dataset_collection_download . galaxy.prepare_history_content_download . galaxy.prepare_history_download . galaxy.prepare_invocation_download . galaxy.prepare_pdf_download . galaxy.prune_history_audit_table . galaxy.purge_datasets . galaxy.purge_hda . galaxy.recalculate_user_disk_usage . galaxy.set_job_metadata . galaxy.set_metadata . galaxy.setup_fetch_data . galaxy.touch . galaxy.write_history_content_to . galaxy.write_history_to . galaxy.write_invocation_to [2024-02-23 14:21:33,704: DEBUG/MainProcess] | Worker: Starting Pool [2024-02-23 14:21:33,704: DEBUG/MainProcess] ^-- substep ok [2024-02-23 14:21:33,704: DEBUG/MainProcess] | Worker: Starting Consumer [2024-02-23 14:21:33,704: DEBUG/MainProcess] | Consumer: Starting Connection [2024-02-23 14:21:33,711: INFO/MainProcess] Connected to sqlalchemy+sqlite:////tmp/tmpqrlh6ih1/galaxy.sqlite [2024-02-23 14:21:33,712: DEBUG/MainProcess] ^-- substep ok [2024-02-23 14:21:33,712: DEBUG/MainProcess] | Consumer: Starting Events [2024-02-23 14:21:33,712: DEBUG/MainProcess] ^-- substep ok [2024-02-23 14:21:33,712: DEBUG/MainProcess] | Consumer: Starting Tasks [2024-02-23 14:21:33,762: DEBUG/MainProcess] ^-- substep ok [2024-02-23 14:21:33,762: DEBUG/MainProcess] | Consumer: Starting Heart [2024-02-23 14:21:33,762: DEBUG/MainProcess] ^-- substep ok [2024-02-23 14:21:33,762: DEBUG/MainProcess] | Consumer: Starting event loop [2024-02-23 14:21:33,762: INFO/MainProcess] celery@laila ready. ==> /tmp/tmpqrlh6ih1/gravity/log/gunicorn.log <== DEBUG:galaxy.app:python path is: /scratch/rico/galaxy, /scratch/rico/.planemo/gx_venv_3/bin, /scratch/rico/galaxy/lib, /usr/lib/python37.zip, /usr/lib/python3.7, /usr/lib/python3.7/lib-dynload, /scratch/rico/.planemo/gx_venv_3/lib/python3.7/site-packages DEBUG:galaxy.config:Configuration directory is /tmp/tmpqrlh6ih1 DEBUG:galaxy.config:Data directory is /scratch/rico/galaxy/database DEBUG:galaxy.config:Managed config directory is /tmp/tmpqrlh6ih1 WARNING:galaxy.config:Option master_api_key has been deprecated in favor of bootstrap_admin_api_key DEBUG:galaxy.config:No extra version JSON file detected at /scratch/rico/galaxy/version.json WARNING:galaxy.carbon_emissions:No corresponding location name exists for location code: . INFO:galaxy.carbon_emissions:Using global default values for location name and carbon intensity... ==> /tmp/tmpqrlh6ih1/gravity/log/celery-beat.log <== [2024-02-23 14:21:34,069: DEBUG/MainProcess] Setting default socket timeout to 30 [2024-02-23 14:21:34,069: INFO/MainProcess] beat: Starting... [2024-02-23 14:21:34,090: DEBUG/MainProcess] Current schedule: <ScheduleEntry: cleanup-expired-notifications galaxy.cleanup_expired_notifications() <freq: 1.00 day> <ScheduleEntry: cleanup-short-term-storage galaxy.cleanup_short_term_storage() <freq: 1.00 hour> <ScheduleEntry: clean-object-store-caches galaxy.clean_object_store_caches() <freq: 10.00 minutes> <ScheduleEntry: prune-history-audit-table galaxy.prune_history_audit_table() <freq: 1.00 hour> <ScheduleEntry: celery.backend_cleanup celery.backend_cleanup() <crontab: 0 4 * * * (m/h/d/dM/MY)> [2024-02-23 14:21:34,090: DEBUG/MainProcess] beat: Ticking with max interval->5.00 minutes [2024-02-23 14:21:34,090: DEBUG/MainProcess] beat: Waking up in 5.00 minutes. ==> /tmp/tmpqrlh6ih1/gravity/log/gunicorn.log <== INFO:alembic.runtime.migration:Context impl SQLiteImpl. INFO:alembic.runtime.migration:Will assume non-transactional DDL. INFO:alembic.runtime.migration:Running stamp_revision -> 8a19186a6ee7 DEBUG:alembic.runtime.migration:new branch insert 8a19186a6ee7 INFO:alembic.runtime.migration:Context impl SQLiteImpl. INFO:alembic.runtime.migration:Will assume non-transactional DDL. INFO:alembic.runtime.migration:Running stamp_revision -> d4a650f47a3c DEBUG:alembic.runtime.migration:new branch insert d4a650f47a3c INFO:galaxy.app:Install database targeting Galaxy's database configuration. DEBUG:galaxy.web_stack:GunicornApplicationStack initialized galaxy.jobs DEBUG 2024-02-23 14:21:34,770 [pN:main,p:78505,tN:MainThread] Loading job configuration from /scratch/rico/galaxytools/tools/ncbi_fcs_adaptor/planemo_job_conf.xml galaxy.jobs DEBUG 2024-02-23 14:21:34,770 [pN:main,p:78505,tN:MainThread] Read job configuration from file: /scratch/rico/galaxytools/tools/ncbi_fcs_adaptor/planemo_job_conf.xml galaxy.web_stack.handlers INFO 2024-02-23 14:21:34,781 [pN:main,p:78505,tN:MainThread] JobConfiguration: No job handler assignment method is set, defaulting to 'HANDLER_ASSIGNMENT_METHODS.DB_SKIP_LOCKED', set the `assign_with` attribute on <handlers> to override the default galaxy.jobs INFO 2024-02-23 14:21:34,781 [pN:main,p:78505,tN:MainThread] Job handler assignment methods set to: db-skip-locked galaxy.web_stack.handlers DEBUG 2024-02-23 14:21:34,781 [pN:main,p:78505,tN:MainThread] default set to child with id or tag 'docker_local' galaxy.jobs DEBUG 2024-02-23 14:21:34,781 [pN:main,p:78505,tN:MainThread] Done loading job configuration galaxy.security.vault WARNING 2024-02-23 14:21:34,965 [pN:main,p:78505,tN:MainThread] No vault configured. We recommend defining the vault_config_file setting in galaxy.yml galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,007 [pN:main,p:78505,tN:MainThread] Loading datatypes from /scratch/rico/galaxy/lib/galaxy/config/sample/datatypes_conf.xml.sample galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,008 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension source.h. galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,008 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension source.c. galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,008 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension source.cpp. galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,008 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension source.py. galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,009 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension source.go. galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,009 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension source.rs. galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,009 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension source.cs. galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,009 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:Binary from the datatype registry for extension hep.root. galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,009 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:JP2 from the datatype registry for extension jp2. galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,009 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:Ab1 from the datatype registry for extension ab1. galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,010 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.assembly:Amos from the datatype registry for extension afg. galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,010 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.goldenpath:GoldenPath from the datatype registry for extension agp. galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,011 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.anvio:AnvioComposite from the datatype registry for extension anvio_cog_profile. galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,011 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.anvio:AnvioComposite from the datatype registry for extension anvio_composite. galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,011 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:Data from the datatype registry for extension anvio_classifier. galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,011 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.anvio:AnvioContigsDB from the datatype registry for extension anvio_contigs_db. galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,012 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.anvio:AnvioDB from the datatype registry for extension anvio_db. galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,012 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.anvio:AnvioGenomesDB from the datatype registry for extension anvio_genomes_db. galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,012 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.anvio:AnvioPanDB from the datatype registry for extension anvio_pan_db. galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,012 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.anvio:AnvioComposite from the datatype registry for extension anvio_pfam_profile. galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,012 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.anvio:AnvioProfileDB from the datatype registry for extension anvio_profile_db. galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,012 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.anvio:AnvioSamplesDB from the datatype registry for extension anvio_samples_db. galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,012 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.text:Json from the datatype registry for extension anvio_state. galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,012 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.anvio:AnvioStructureDB from the datatype registry for extension anvio_structure_db. galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,012 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.tabular:TSV from the datatype registry for extension anvio_variability. galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,012 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.text:Arff from the datatype registry for extension arff. galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,013 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.text:Paf from the datatype registry for extension paf. galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,013 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.text:Gfa1 from the datatype registry for extension gfa1. galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,013 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.text:Gfa2 from the datatype registry for extension gfa2. galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,013 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:GenericAsn1 from the datatype registry for extension asn1. galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,013 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:GenericAsn1Binary from the datatype registry for extension asn1-binary. galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,013 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.sequence:Axt from the datatype registry for extension axt. galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,013 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.tabular:FeatureLocationIndex from the datatype registry for extension fli. galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,013 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:Bam from the datatype registry for extension bam. galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,013 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:Binary from the datatype registry for extension bai. galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,013 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:BamInputSorted from the datatype registry for extension qname_input_sorted.bam. galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,014 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:BamQuerynameSorted from the datatype registry for extension qname_sorted.bam. galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,014 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:BamNative from the datatype registry for extension unsorted.bam. galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,014 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:ProBam from the datatype registry for extension probam. galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,014 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:CRAM from the datatype registry for extension cram. galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,014 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.interval:Bed from the datatype registry for extension bed. galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,014 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.interval:BedGraph from the datatype registry for extension bedgraph. galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,014 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.interval:BedStrict from the datatype registry for extension bedstrict. galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,014 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.interval:Bed6 from the datatype registry for extension bed6. galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,014 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.interval:Bed12 from the datatype registry for extension bed12. galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,014 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.interval:ProBed from the datatype registry for extension probed. galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,015 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.chrominfo:ChromInfo from the datatype registry for extension len. galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,015 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:DAA from the datatype registry for extension daa. galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,015 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:RMA6 from the datatype registry for extension rma6. galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,015 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:DMND from the datatype registry for extension dmnd. galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,015 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:Parquet from the datatype registry for extension parquet. galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,015 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:Idat from the datatype registry for extension idat. galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,015 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:BigBed from the datatype registry for extension bigbed. galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,015 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:BigWig from the datatype registry for extension bigwig. galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,015 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:Binary from the datatype registry for extension cxb. galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,016 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.interval:ChromatinInteractions from the datatype registry for extension chrint. galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,016 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.tabular:CSV from the datatype registry for extension csv. galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,016 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.tabular:TSV from the datatype registry for extension tsv. galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,016 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.tabular:TSV from the datatype registry for extension intermine_tabular. galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,016 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.interval:CustomTrack from the datatype registry for extension customtrack. galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,016 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.ngsindex:BowtieColorIndex from the datatype registry for extension bowtie_color_index. galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,017 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.ngsindex:BowtieBaseIndex from the datatype registry for extension bowtie_base_index. galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,017 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.sequence:csFasta from the datatype registry for extension csfasta. galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,017 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:Data from the datatype registry for extension data. galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,017 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:Binary from the datatype registry for extension gz. galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,017 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:Binary from the datatype registry for extension binary. galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,017 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.text:Json from the datatype registry for extension d3_hierarchy. galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,017 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.text:ImgtJson from the datatype registry for extension imgt.json. galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,017 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.text:GeoJson from the datatype registry for extension geojson. galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,017 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.text:Json from the datatype registry for extension data_manager_json. galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,017 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.sequence:DotBracket from the datatype registry for extension dbn. galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,017 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.tabular:Tabular from the datatype registry for extension fai. galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,018 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.sequence:Fasta from the datatype registry for extension fasta. galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,018 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.sequence:Fastg from the datatype registry for extension fastg. galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,018 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.sequence:Fastq from the datatype registry for extension fastq. galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,018 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.sequence:FastqSanger from the datatype registry for extension fastqsanger. galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,018 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.sequence:FastqSolexa from the datatype registry for extension fastqsolexa. galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,019 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.sequence:FastqCSSanger from the datatype registry for extension fastqcssanger. galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,019 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.sequence:FastqIllumina from the datatype registry for extension fastqillumina. galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,019 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.sequence:SequenceSplitLocations from the datatype registry for extension fqtoc. galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,019 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.tabular:Eland from the datatype registry for extension eland. galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,019 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.tabular:ElandMulti from the datatype registry for extension elandmulti. galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,019 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.tracks:GeneTrack from the datatype registry for extension genetrack. galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,019 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.interval:Gff from the datatype registry for extension gff. galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,019 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.interval:Gff3 from the datatype registry for extension gff3. galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,020 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.images:Gif from the datatype registry for extension gif. galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,020 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.images:Gmaj from the datatype registry for extension gmaj.zip. galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,020 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension graph_dot. galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,020 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.interval:Gtf from the datatype registry for extension gtf. galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,020 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:Binary from the datatype registry for extension toolshed.gz. galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,020 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:Binary from the datatype registry for extension hdf4. galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,020 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:H5 from the datatype registry for extension h5. galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,020 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:H5 from the datatype registry for extension scool. galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,020 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:Grib from the datatype registry for extension grib. galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,021 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:Loom from the datatype registry for extension loom. galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,021 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:Anndata from the datatype registry for extension h5ad. galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,021 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:Visium from the datatype registry for extension visium.tar.gz. galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,021 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:H5 from the datatype registry for extension mz5. galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,021 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.text:Json from the datatype registry for extension hyphy_results.json. galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,021 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.text:Json from the datatype registry for extension hivtrace. galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,021 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:Cool from the datatype registry for extension cool. galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,021 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:MCool from the datatype registry for extension mcool. galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,021 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:H5MLM from the datatype registry for extension h5mlm. galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,021 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:LudwigModel from the datatype registry for extension ludwig_model. galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,021 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.text:Html from the datatype registry for extension html. galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,022 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.text:Html from the datatype registry for extension ludwig_report.html. galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,022 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.interval:Interval from the datatype registry for extension interval. galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,022 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:Binary from the datatype registry for extension jellyfish. galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,022 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:Binary from the datatype registry for extension ktab. galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,022 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:Binary from the datatype registry for extension hist. galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,022 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:Binary from the datatype registry for extension prof. galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,103 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.isa:IsaTab from the datatype registry for extension isa-tab. galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,103 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.isa:IsaJson from the datatype registry for extension isa-json. galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,103 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.tabular:Tabular from the datatype registry for extension picard_interval_list. galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,103 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension gatk_interval. galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,103 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension gatk_report. galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,104 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.tabular:Tabular from the datatype registry for extension gatk_dbsnp. galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,104 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.tabular:Tabular from the datatype registry for extension gatk_tranche. galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,104 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.tabular:Tabular from the datatype registry for extension gatk_recal. galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,104 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.tabular:Tabular from the datatype registry for extension cnn. galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,104 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.tabular:Tabular from the datatype registry for extension cns. galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,104 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.tabular:Tabular from the datatype registry for extension cnr. galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,104 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension hhr. galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,105 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.images:Jpg from the datatype registry for extension jpg. galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,105 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.images:Tiff from the datatype registry for extension tiff. galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,105 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.images:Tiff from the datatype registry for extension tf2. galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,105 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.images:Tiff from the datatype registry for extension tf8. galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,105 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.images:Tiff from the datatype registry for extension btf. galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,105 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.images:Tiff from the datatype registry for extension tif. galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,105 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.images:Tiff from the datatype registry for extension svs. galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,105 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.images:Tiff from the datatype registry for extension scn. galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,105 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.images:Tiff from the datatype registry for extension bif. galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,105 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.images:OMETiff from the datatype registry for extension ome.tiff. galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,106 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.images:Hamamatsu from the datatype registry for extension vms. galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,106 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.images:Hamamatsu from the datatype registry for extension vmu. galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,106 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.images:Hamamatsu from the datatype registry for extension ndpi. galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,106 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.images:Mirax from the datatype registry for extension mrxs. galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,106 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.images:Sakura from the datatype registry for extension svslide. galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,106 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.images:Bmp from the datatype registry for extension bmp. galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,106 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.images:Im from the datatype registry for extension im. galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,106 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.images:Pcd from the datatype registry for extension pcd. galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,106 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.images:Pcx from the datatype registry for extension pcx. galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,106 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.images:Ppm from the datatype registry for extension ppm. galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,106 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.images:Psd from the datatype registry for extension psd. galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,106 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.images:Xbm from the datatype registry for extension xbm. galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,106 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.images:Xpm from the datatype registry for extension xpm. galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,106 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.images:Rgb from the datatype registry for extension rgb. galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,107 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.images:Pbm from the datatype registry for extension pbm. galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,107 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.images:Pgm from the datatype registry for extension pgm. galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,107 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.images:Nrrd from the datatype registry for extension nrrd. galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,107 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.images:Nrrd from the datatype registry for extension nhdr. galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,107 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.sequence:RNADotPlotMatrix from the datatype registry for extension rna_eps. galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,108 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.qiime2:QIIME2Artifact from the datatype registry for extension qza. galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,108 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.qiime2:QIIME2Visualization from the datatype registry for extension qzv. galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,108 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.qiime2:QIIME2Metadata from the datatype registry for extension qiime2.tabular. galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,108 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:CompressedZipArchive from the datatype registry for extension zip. galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,108 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:CompressedZipArchive from the datatype registry for extension ncbi_genome_dataset.zip. galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,108 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:CompressedArchive from the datatype registry for extension tar. galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,108 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:Directory from the datatype registry for extension directory. galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,108 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.text:Yaml from the datatype registry for extension yaml. galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,109 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.tabular:Tabular from the datatype registry for extension mrm. galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,111 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.proteomics:Dta from the datatype registry for extension dta. galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,111 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.proteomics:Dta2d from the datatype registry for extension dta2d. galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,111 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.proteomics:Edta from the datatype registry for extension edta. galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,111 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.proteomics:PepXml from the datatype registry for extension pepxml. galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,111 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.proteomics:PepXml from the datatype registry for extension raw_pepxml. galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,111 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.proteomics:PepXml from the datatype registry for extension peptideprophet_pepxml. galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,111 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.proteomics:PepXml from the datatype registry for extension interprophet_pepxml. galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,111 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.proteomics:ProtXML from the datatype registry for extension protxml. galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,112 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.proteomics:ParamXml from the datatype registry for extension paramxml. galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,112 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.proteomics:Kroenik from the datatype registry for extension kroenik. galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,112 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.proteomics:PepList from the datatype registry for extension peplist. galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,112 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.proteomics:PSMS from the datatype registry for extension psms. galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,112 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.proteomics:PepXmlReport from the datatype registry for extension pepxml.tsv. galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,112 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.proteomics:ProtXmlReport from the datatype registry for extension protxml.tsv. galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,112 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.proteomics:MascotDat from the datatype registry for extension mascotdat. galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,112 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.proteomics:MzIdentML from the datatype registry for extension mzid. galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,112 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.proteomics:IdXML from the datatype registry for extension idxml. galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,112 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.proteomics:TandemXML from the datatype registry for extension tandem. galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,112 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension sirius.ms. galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,112 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.proteomics:ThermoRAW from the datatype registry for extension thermo.raw. galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,112 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:BafTar from the datatype registry for extension brukerbaf.d.tar. galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,113 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:YepTar from the datatype registry for extension agilentbrukeryep.d.tar. galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,113 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:TdfTar from the datatype registry for extension brukertdf.d.tar. galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,113 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:MassHunterTar from the datatype registry for extension agilentmasshunter.d.tar. galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,113 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:MassLynxTar from the datatype registry for extension watersmasslynx.raw.tar. galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,113 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:WiffTar from the datatype registry for extension wiff.tar. galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,113 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:Wiff2Tar from the datatype registry for extension wiff2.tar. galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,113 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.proteomics:MascotXML from the datatype registry for extension mascotxml. galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,113 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.proteomics:MzTab from the datatype registry for extension mztab. galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,113 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.proteomics:MzTab2 from the datatype registry for extension mztab2. galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,113 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.proteomics:MzML from the datatype registry for extension mzml. galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,113 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.proteomics:NmrML from the datatype registry for extension nmrml. galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,113 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:Meryldb from the datatype registry for extension meryldb. galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,113 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:Bref3 from the datatype registry for extension bref3. galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,114 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.proteomics:Mgf from the datatype registry for extension mgf. galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,114 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.proteomics:Wiff from the datatype registry for extension wiff. galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,114 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.proteomics:Wiff2 from the datatype registry for extension wiff2. galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,114 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.proteomics:MzXML from the datatype registry for extension mzxml. galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,114 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.proteomics:MzData from the datatype registry for extension mzdata. galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,114 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.proteomics:Ms2 from the datatype registry for extension ms2. galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,114 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.proteomics:MzQuantML from the datatype registry for extension mzq. galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,114 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:SQlite from the datatype registry for extension sqlite. galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,114 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:MzSQlite from the datatype registry for extension mz.sqlite. galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,114 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:OSW from the datatype registry for extension osw. galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,114 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:PQP from the datatype registry for extension pqp. galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,114 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.proteomics:TraML from the datatype registry for extension traml. galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,115 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.proteomics:TrafoXML from the datatype registry for extension trafoxml. galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,115 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.proteomics:FeatureXML from the datatype registry for extension featurexml. galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,115 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.proteomics:ConsensusXML from the datatype registry for extension consensusxml. galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,115 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.proteomics:UniProtXML from the datatype registry for extension uniprotxml. galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,115 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.proteomics:XquestXML from the datatype registry for extension xquest.xml. galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,115 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.proteomics:XquestSpecXML from the datatype registry for extension spec.xml. galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,115 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.proteomics:QCML from the datatype registry for extension qcml. galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,115 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.text:Json from the datatype registry for extension mzqc. galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,115 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.proteomics:Msp from the datatype registry for extension msp. galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,115 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.proteomics:SPLibNoIndex from the datatype registry for extension splib_noindex. galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,115 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.proteomics:SPLib from the datatype registry for extension splib. galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,115 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:BlibSQlite from the datatype registry for extension blib. galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,115 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:DlibSQlite from the datatype registry for extension dlib. galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,116 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:ElibSQlite from the datatype registry for extension elib. galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,116 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.proteomics:XHunterAslFormat from the datatype registry for extension hlf. galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,116 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:IdpDB from the datatype registry for extension idpdb. galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,116 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.proteomics:Sf3 from the datatype registry for extension sf3. galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,116 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:Binary from the datatype registry for extension cps. galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,116 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.tabular:ConnectivityTable from the datatype registry for extension ct. galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,116 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:PostgresqlArchive from the datatype registry for extension postgresql. galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,116 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:MongoDBArchive from the datatype registry for extension mongodb. galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,116 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:GeneNoteBook from the datatype registry for extension genenotebook. galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,116 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:SearchGuiArchive from the datatype registry for extension searchgui_archive. galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,116 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:Fast5Archive from the datatype registry for extension fast5.tar. galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,116 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:Fast5ArchiveGz from the datatype registry for extension fast5.tar.gz. galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,116 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:Fast5ArchiveBz2 from the datatype registry for extension fast5.tar.bz2. galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,117 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:CompressedArchive from the datatype registry for extension peptideshaker_archive. galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,117 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.tabular:Tabular from the datatype registry for extension percin. galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,117 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.xml:GenericXml from the datatype registry for extension percout. galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,117 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.tabular:Tabular from the datatype registry for extension hardklor. galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,117 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.tabular:Tabular from the datatype registry for extension kronik. galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,117 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.proteomics:ImzML from the datatype registry for extension imzml. galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,117 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.images:Analyze75 from the datatype registry for extension analyze75. galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,117 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.images:Nifti1 from the datatype registry for extension nii1. galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,117 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.images:Nifti2 from the datatype registry for extension nii2. galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,118 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.images:Gifti from the datatype registry for extension gii. galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,118 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.images:Tck from the datatype registry for extension tck. galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,118 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.images:Trk from the datatype registry for extension trk. galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,118 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.images:Mrc2014 from the datatype registry for extension mrc. galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,118 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.images:Star from the datatype registry for extension star. galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,118 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.proteomics:PEFF from the datatype registry for extension peff. galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,118 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension toml. galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,118 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.flow:FCS from the datatype registry for extension fcs. galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,119 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.tabular:Tabular from the datatype registry for extension flowtext. galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,119 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.tabular:Tabular from the datatype registry for extension flowclr. galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,119 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.tabular:Tabular from the datatype registry for extension flowmfi. galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,119 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.tabular:Tabular from the datatype registry for extension flowstat1. galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,119 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.tabular:Tabular from the datatype registry for extension flowstat2. galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,119 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.tabular:Tabular from the datatype registry for extension flowstat3. galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,119 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.tabular:Tabular from the datatype registry for extension flowscore. galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,120 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:RData from the datatype registry for extension flowframe. galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,120 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:RData from the datatype registry for extension fsom. galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,120 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:RData from the datatype registry for extension flowset. galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,120 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.tabular:Tabular from the datatype registry for extension metacyto_clr.txt. galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,120 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.metacyto:mSummary from the datatype registry for extension metacyto_summary.txt. galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,120 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.metacyto:mStats from the datatype registry for extension metacyto_stats.txt. galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,120 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:CompressedArchive from the datatype registry for extension deeptools_compute_matrix_archive. galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,121 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:CompressedArchive from the datatype registry for extension deeptools_coverage_matrix. galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,121 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:NetCDF from the datatype registry for extension netcdf. galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,121 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.images:Eps from the datatype registry for extension eps. galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,121 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.images:Rast from the datatype registry for extension rast. galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,121 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.images:Laj from the datatype registry for extension laj. galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,121 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.sequence:Lav from the datatype registry for extension lav. galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,121 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.sequence:Maf from the datatype registry for extension maf. galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,121 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.sequence:MafCustomTrack from the datatype registry for extension mafcustomtrack. galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,121 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.tabular:MatrixMarket from the datatype registry for extension mtx. galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,121 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.tabular:CMAP from the datatype registry for extension cmap. galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,121 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.interval:ENCODEPeak from the datatype registry for extension encodepeak. galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,122 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.images:Pdf from the datatype registry for extension pdf. galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,122 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.tabular:Pileup from the datatype registry for extension pileup. galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,122 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.tabular:Psl from the datatype registry for extension psl. galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,122 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.text:Obo from the datatype registry for extension obo. galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,122 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.xml:Owl from the datatype registry for extension owl. galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,122 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.images:Png from the datatype registry for extension png. galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,122 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.qualityscore:QualityScore from the datatype registry for extension qual. galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,122 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.qualityscore:QualityScoreSolexa from the datatype registry for extension qualsolexa. galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,122 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.qualityscore:QualityScoreIllumina from the datatype registry for extension qualillumina. galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,122 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.qualityscore:QualityScoreSOLiD from the datatype registry for extension qualsolid. galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,122 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.qualityscore:QualityScore454 from the datatype registry for extension qual454. galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,122 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.assembly:Roadmaps from the datatype registry for extension roadmaps. galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,122 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.tabular:Sam from the datatype registry for extension sam. galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,123 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:Scf from the datatype registry for extension scf. galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,123 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.assembly:Sequences from the datatype registry for extension sequences. galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,123 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.text:SnpEffDb from the datatype registry for extension snpeffdb. galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,123 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.text:SnpSiftDbNSFP from the datatype registry for extension snpsiftdbnsfp. galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,123 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.tabular:Tabular from the datatype registry for extension dbnsfp.tabular. galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,123 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:Sff from the datatype registry for extension sff. galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,123 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:Sra from the datatype registry for extension sra. galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,123 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.tabular:SraManifest from the datatype registry for extension sra_manifest.tabular. galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,123 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.xml:GenericXml from the datatype registry for extension svg. galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,123 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.tabular:Taxonomy from the datatype registry for extension taxonomy. galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,123 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.tabular:Tabular from the datatype registry for extension tabular. galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,124 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:TwoBit from the datatype registry for extension twobit. galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,124 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:SQmass from the datatype registry for extension sqmass. galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,124 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:GeminiSQLite from the datatype registry for extension gemini.sqlite. galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,124 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:ChiraSQLite from the datatype registry for extension chira.sqlite. galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,124 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:CuffDiffSQlite from the datatype registry for extension cuffdiff.sqlite. galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,124 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:GAFASQLite from the datatype registry for extension gafa.sqlite. galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,124 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:NcbiTaxonomySQlite from the datatype registry for extension ncbitaxonomy.sqlite. galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,124 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension txt. galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,124 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:LineCount from the datatype registry for extension linecount. galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,124 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.sequence:MemePsp from the datatype registry for extension memepsp. galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,124 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.xml:MEMEXml from the datatype registry for extension memexml. galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,124 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.xml:CisML from the datatype registry for extension cisml. galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,125 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.xml:GenericXml from the datatype registry for extension xml. galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,125 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.xml:GenericXml from the datatype registry for extension xsd. galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,125 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.xml:Dzi from the datatype registry for extension dzi. galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,125 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.tabular:Vcf from the datatype registry for extension vcf. galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,125 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:Bcf from the datatype registry for extension bcf. galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,125 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:Bcf from the datatype registry for extension bcf_bgzip. galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,126 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:BcfUncompressed from the datatype registry for extension bcf_uncompressed. galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,126 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.assembly:Velvet from the datatype registry for extension velvet. galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,126 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.interval:Wiggle from the datatype registry for extension wig. galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,126 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:Binary from the datatype registry for extension interval_index. galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,127 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:Binary from the datatype registry for extension odgi. galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,127 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:CompressedArchive from the datatype registry for extension vg. galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,127 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:Binary from the datatype registry for extension xg. galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,127 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:Binary from the datatype registry for extension protobuf2. galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,127 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:Binary from the datatype registry for extension protobuf3. galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,127 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:Binary from the datatype registry for extension onnx. galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,127 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:Binary from the datatype registry for extension tabix. galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,127 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.interval:IntervalTabix from the datatype registry for extension interval_tabix.gz. galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,127 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.interval:JuicerMediumTabix from the datatype registry for extension juicer_medium_tabix.gz. galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,127 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.interval:BedTabix from the datatype registry for extension bed_tabix.gz. galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,128 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.interval:GffTabix from the datatype registry for extension gff_tabix.gz. galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,128 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:Binary from the datatype registry for extension bgzip. galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,128 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.tabular:VcfGz from the datatype registry for extension vcf_bgzip. galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,128 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:Binary from the datatype registry for extension bus. galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,128 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:Binary from the datatype registry for extension kallisto.idx. galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,128 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.xml:Phyloxml from the datatype registry for extension phyloxml. galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,128 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:Newick from the datatype registry for extension newick. galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,128 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:Newick from the datatype registry for extension nhx. galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,128 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:Nexus from the datatype registry for extension nex. galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,128 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.text:IQTree from the datatype registry for extension iqtree. galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,130 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.mothur:SquareDistanceMatrix from the datatype registry for extension mldist. galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,132 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.genetics:Affybatch from the datatype registry for extension affybatch. galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,133 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.genetics:Eigenstratgeno from the datatype registry for extension eigenstratgeno. galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,133 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.genetics:Eigenstratpca from the datatype registry for extension eigenstratpca. galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,133 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.genetics:Eset from the datatype registry for extension eset. galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,133 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.genetics:Fped from the datatype registry for extension fped. galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,133 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.genetics:Fphe from the datatype registry for extension fphe. galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,133 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.genetics:GenomeGraphs from the datatype registry for extension gg. galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,133 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.genetics:ldIndep from the datatype registry for extension ldindep. galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,133 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.genetics:MAlist from the datatype registry for extension malist. galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,133 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.genetics:Lped from the datatype registry for extension lped. galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,133 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.genetics:Pbed from the datatype registry for extension pbed. galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,134 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.genetics:Pheno from the datatype registry for extension pheno. galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,134 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.genetics:Pphe from the datatype registry for extension pphe. galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,134 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.genetics:RexpBase from the datatype registry for extension rexpbase. galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,134 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.genetics:Rgenetics from the datatype registry for extension rgenetics. galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,134 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.genetics:Snptest from the datatype registry for extension snptest. galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,134 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.genetics:SNPMatrix from the datatype registry for extension snpmatrix. galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,134 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:ExcelXls from the datatype registry for extension xls. galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,134 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.text:Ipynb from the datatype registry for extension ipynb. galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,134 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.text:Json from the datatype registry for extension json. galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,134 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.text:ExpressionJson from the datatype registry for extension expression.json. galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,135 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.graph:Xgmml from the datatype registry for extension xgmml. galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,135 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.graph:Sif from the datatype registry for extension sif. galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,136 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.triples:Triples from the datatype registry for extension triples. galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,136 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.triples:HDT from the datatype registry for extension hdt. galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,136 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.triples:NTriples from the datatype registry for extension nt. galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,136 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.triples:N3 from the datatype registry for extension n3. galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,136 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.triples:Turtle from the datatype registry for extension ttl. galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,137 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.triples:Rdf from the datatype registry for extension rdf. galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,137 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.triples:Jsonld from the datatype registry for extension jsonld. galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,137 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:ExcelXls from the datatype registry for extension excel.xls. galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,137 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:Xlsx from the datatype registry for extension xlsx. galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,137 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:Binary from the datatype registry for extension docx. galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,137 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension btwisted. galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,137 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension cai. galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,137 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension cat_db. galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,137 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension charge. galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,138 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension checktrans. galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,138 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension chips. galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,138 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension codcmp. galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,138 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension coderet. galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,138 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension compseq. galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,138 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension cpgplot. galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,138 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension cpgreport. galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,138 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension cusp. galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,138 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension cut. galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,138 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension dan. galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,138 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension digest. galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,139 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension dreg. galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,139 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension einverted. galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,139 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension epestfind. galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,139 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension equicktandem. galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,139 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension est2genome. galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,139 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension etandem. galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,139 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension freak. galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,139 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension fuzznuc. galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,139 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension fuzzpro. galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,139 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension fuzztran. galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,139 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension garnier. galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,140 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension geecee. galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,140 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension helixturnhelix. galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,140 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension hmoment. galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,140 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension isochore. galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,140 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension match. galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,140 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension nametable. galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,140 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension needle. galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,140 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension newcpgreport. galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,140 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension newcpgseek. galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,140 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension noreturn. galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,140 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension palindrome. galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,141 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension pepcoil. galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,141 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension pepinfo. galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,141 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension pepstats. galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,141 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension polydot. galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,141 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension preg. galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,141 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension prettyseq. galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,141 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension primersearch. galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,141 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension showfeat. galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,141 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension showorf. galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,141 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension sixpack. galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,141 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension strider. galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,142 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension supermatcher. galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,142 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension syco. galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,142 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension textsearch. galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,142 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension vectorstrip. galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,142 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension wobble. galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,142 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension wordcount. galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,142 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension dbmotif. galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,142 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension diffseq. galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,142 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension excel. galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,142 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension feattable. galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,142 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension motif. galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,143 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension regions. galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,143 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension seqtable. galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,143 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension simple. galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,143 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension table. galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,143 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension tagseq. galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,143 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension acedb. galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,143 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension clustal. galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,143 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension codata. galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,143 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension embl. galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,143 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension fitch. galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,143 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension gcg. galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,144 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.sequence:Genbank from the datatype registry for extension genbank. galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,144 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension hennig86. galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,144 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension ig. galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,144 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension jackknifer. galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,144 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension jackknifernon. galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,144 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension mega. galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,144 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension meganon. galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,144 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension ncbi. galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,144 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension nexus. galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,144 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension nexusnon. galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,145 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.phylip:Phylip from the datatype registry for extension phylip. galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,145 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension phylipnon. galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,145 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension pir. galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,145 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension staden. galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,145 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension swiss. galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,146 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.msa:Msf from the datatype registry for extension msf. galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,146 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension markx0. galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,147 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension markx1. galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,147 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension markx10. galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,147 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension markx2. galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,147 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension markx3. galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,147 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension pair. galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,147 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension score. galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,147 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension srs. galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,147 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension srspair. galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,148 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.annotation:SnapHmm from the datatype registry for extension snaphmm. galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,148 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.annotation:Augustus from the datatype registry for extension augustus. galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,148 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:ICM from the datatype registry for extension icm. galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,148 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.msa:InfernalCM from the datatype registry for extension cm. galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,148 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.msa:Hmmer2 from the datatype registry for extension hmm2. galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,148 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.msa:Hmmer3 from the datatype registry for extension hmm3. galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,148 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.msa:Stockholm_1_0 from the datatype registry for extension stockholm. galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,148 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.msa:MauveXmfa from the datatype registry for extension xmfa. galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,149 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.microarrays:Cel from the datatype registry for extension cel. galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,149 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.microarrays:Gpr from the datatype registry for extension gpr. galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,149 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.microarrays:Gal from the datatype registry for extension gal. galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,149 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:RDS from the datatype registry for extension rds. galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,149 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:RDS from the datatype registry for extension phyloseq. galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,149 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:RData from the datatype registry for extension rdata. galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,149 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:RData from the datatype registry for extension rdata.sce. galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,149 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:RData from the datatype registry for extension rdata.xcms.raw. galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,150 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:RData from the datatype registry for extension rdata.msnbase.raw. galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,150 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:RData from the datatype registry for extension rdata.xcms.findchrompeaks. galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,150 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:RData from the datatype registry for extension rdata.xcms.group. galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,150 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:RData from the datatype registry for extension rdata.xcms.retcor. galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,150 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:RData from the datatype registry for extension rdata.xcms.fillpeaks. galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,150 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:RData from the datatype registry for extension rdata.camera.positive. galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,150 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:RData from the datatype registry for extension rdata.camera.negative. galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,150 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:RData from the datatype registry for extension rdata.camera.quick. galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,151 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.hdf5:HDF5SummarizedExperiment from the datatype registry for extension rdata.se. galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,151 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:Binary from the datatype registry for extension rdock_as. galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,151 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:OxliCountGraph from the datatype registry for extension oxlicg. galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,151 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:OxliNodeGraph from the datatype registry for extension oxling. galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,151 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:OxliTagSet from the datatype registry for extension oxlits. galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,151 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:OxliStopTags from the datatype registry for extension oxlist. galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,151 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:OxliSubset from the datatype registry for extension oxliss. galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,151 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:OxliGraphLabels from the datatype registry for extension oxligl. galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,152 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.constructive_solid_geometry:STL from the datatype registry for extension stl. galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,153 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.constructive_solid_geometry:PlyAscii from the datatype registry for extension plyascii. galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,153 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.constructive_solid_geometry:PlyBinary from the datatype registry for extension plybinary. galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,153 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.constructive_solid_geometry:VtkAscii from the datatype registry for extension vtkascii. galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,153 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.constructive_solid_geometry:VtkBinary from the datatype registry for extension vtkbinary. galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,153 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.text:Biom1 from the datatype registry for extension biom1. galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,153 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:Biom2 from the datatype registry for extension biom2. galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,153 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:MashSketch from the datatype registry for extension msh. galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,153 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.interval:ScIdx from the datatype registry for extension scidx. galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,155 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.molecules:SMILES from the datatype registry for extension smi. galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,155 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.molecules:SDF from the datatype registry for extension sdf. galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,155 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.molecules:InChI from the datatype registry for extension inchi. galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,155 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.molecules:MOL from the datatype registry for extension mol. galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,156 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.molecules:MOL2 from the datatype registry for extension mol2. galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,156 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.molecules:CML from the datatype registry for extension cml. galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,156 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.molecules:FPS from the datatype registry for extension fps. galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,156 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.molecules:OBFS from the datatype registry for extension obfs. galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,156 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.molecules:DRF from the datatype registry for extension drf. galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,156 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.molecules:PHAR from the datatype registry for extension phar. galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,156 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.molecules:PDB from the datatype registry for extension pdb. galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,156 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.molecules:PDBQT from the datatype registry for extension pdbqt. galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,156 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.molecules:PQR from the datatype registry for extension pqr. galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,156 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.molecules:Cell from the datatype registry for extension cell. galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,156 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.molecules:CIF from the datatype registry for extension cif. galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,157 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.molecules:XYZ from the datatype registry for extension xyz. galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,157 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.molecules:ExtendedXYZ from the datatype registry for extension extxyz. galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,157 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:Trr from the datatype registry for extension trr. galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,157 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:Dcd from the datatype registry for extension dcd. galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,157 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension top. galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,157 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension prmtop. galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,157 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension itp. galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,157 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension mdp. galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,157 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension ndx. galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,157 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension xvg. galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,157 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:Xtc from the datatype registry for extension xtc. galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,158 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:Cpt from the datatype registry for extension cpt. galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,158 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:Edr from the datatype registry for extension edr. galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,158 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:Binary from the datatype registry for extension tpr. galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,158 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.molecules:GRO from the datatype registry for extension gro. galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,158 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension inpcrd. galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,158 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:Vel from the datatype registry for extension vel. galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,158 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.molecules:grd from the datatype registry for extension grd. galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,158 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.molecules:grdtgz from the datatype registry for extension grd.tgz. galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,158 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.mothur:Otu from the datatype registry for extension mothur.otu. galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,158 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.mothur:Otu from the datatype registry for extension mothur.list. galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,159 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.mothur:Sabund from the datatype registry for extension mothur.sabund. galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,159 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.mothur:Sabund from the datatype registry for extension mothur.rabund. galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,159 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.mothur:GroupAbund from the datatype registry for extension mothur.shared. galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,159 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.mothur:GroupAbund from the datatype registry for extension mothur.relabund. galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,159 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.mothur:Names from the datatype registry for extension mothur.names. galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,159 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.mothur:Group from the datatype registry for extension mothur.design. galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,159 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.mothur:Summary from the datatype registry for extension mothur.summary. galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,159 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.mothur:Group from the datatype registry for extension mothur.groups. galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,159 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.mothur:Oligos from the datatype registry for extension mothur.oligos. galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,159 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.sequence:Fasta from the datatype registry for extension mothur.align. galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,159 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.mothur:AccNos from the datatype registry for extension mothur.accnos. galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,160 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.mothur:AccNos from the datatype registry for extension mothur.otulabels. galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,160 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.tabular:Tabular from the datatype registry for extension mothur.otu.corr. galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,160 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.mothur:SecondaryStructureMap from the datatype registry for extension mothur.map. galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,160 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.mothur:AlignCheck from the datatype registry for extension mothur.align.check. galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,160 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.mothur:AlignReport from the datatype registry for extension mothur.align.report. galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,160 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.mothur:LaneMask from the datatype registry for extension mothur.filter. galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,160 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.mothur:DistanceMatrix from the datatype registry for extension mothur.dist. galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,160 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension mothur.tre. galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,160 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.mothur:PairwiseDistanceMatrix from the datatype registry for extension mothur.pair.dist. galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,160 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.mothur:SquareDistanceMatrix from the datatype registry for extension mothur.square.dist. galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,160 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.mothur:LowerTriangleDistanceMatrix from the datatype registry for extension mothur.lower.dist. galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,160 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.mothur:RefTaxonomy from the datatype registry for extension mothur.ref.taxonomy. galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,161 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.mothur:RefTaxonomy from the datatype registry for extension mothur.seq.taxonomy. galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,161 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.mothur:RefTaxonomy from the datatype registry for extension mothur.rdp.taxonomy. galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,161 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.mothur:ConsensusTaxonomy from the datatype registry for extension mothur.cons.taxonomy. galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,161 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.mothur:TaxonomySummary from the datatype registry for extension mothur.tax.summary. galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,161 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.mothur:Frequency from the datatype registry for extension mothur.freq. galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,161 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.mothur:Quantile from the datatype registry for extension mothur.quan. galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,161 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.mothur:Quantile from the datatype registry for extension mothur.filtered.quan. galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,161 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.mothur:Quantile from the datatype registry for extension mothur.masked.quan. galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,161 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.mothur:Quantile from the datatype registry for extension mothur.filtered.masked.quan. galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,161 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.mothur:Axes from the datatype registry for extension mothur.axes. galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,162 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.mothur:SffFlow from the datatype registry for extension mothur.sff.flow. galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,162 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.mothur:CountTable from the datatype registry for extension mothur.count_table. galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,162 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.neo4j:Neo4jDB from the datatype registry for extension neostore. galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,162 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.neo4j:Neo4jDBzip from the datatype registry for extension neostore.zip. galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,162 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.tracks:UCSCTrackHub from the datatype registry for extension trackhub. galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,163 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.blast:BlastXml from the datatype registry for extension blastxml. galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,163 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.blast:BlastNucDb from the datatype registry for extension blastdbn. galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,163 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.blast:BlastProtDb from the datatype registry for extension blastdbp. galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,164 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.blast:BlastDomainDb from the datatype registry for extension blastdbd. galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,164 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.blast:LastDb from the datatype registry for extension lastdb. galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,164 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.blast:BlastNucDb5 from the datatype registry for extension blastdbn5. galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,164 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.blast:BlastProtDb5 from the datatype registry for extension blastdbp5. galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,164 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.blast:BlastDomainDb5 from the datatype registry for extension blastdbd5. galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,164 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:GenericAsn1 from the datatype registry for extension maskinfo-asn1. galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,164 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:GenericAsn1Binary from the datatype registry for extension maskinfo-asn1-binary. galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,164 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:GenericAsn1 from the datatype registry for extension pssm-asn1. galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,165 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.plant_tribes:PlantTribesKsComponents from the datatype registry for extension ptkscmp. galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,165 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.plant_tribes:Smat from the datatype registry for extension smat. galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,165 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.genetics:GenotypeMatrix from the datatype registry for extension alohomora_gts. galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,165 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.tabular:Tabular from the datatype registry for extension alohomora_map. galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,165 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.tabular:Tabular from the datatype registry for extension alohomora_maf. galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,165 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.tabular:Tabular from the datatype registry for extension alohomora_ped. galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,165 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.tabular:Tabular from the datatype registry for extension linkage_pedin. galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,166 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.genetics:DataIn from the datatype registry for extension linkage_datain. galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,166 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.genetics:MarkerMap from the datatype registry for extension linkage_map. galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,166 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.tabular:Tabular from the datatype registry for extension allegro_ihaplo. galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,166 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.tabular:Tabular from the datatype registry for extension allegro_descent. galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,166 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.genetics:AllegroLOD from the datatype registry for extension allegro_fparam. galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,166 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.genetics:IdeasPre from the datatype registry for extension ideaspre. galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,166 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.xml:Sbml from the datatype registry for extension sbml. galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,167 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.spaln:SpalnNuclDb from the datatype registry for extension spalndbnp. galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,168 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.spaln:SpalnProtDb from the datatype registry for extension spalndba. galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,168 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:RDS from the datatype registry for extension dada2_dada. galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,168 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:RDS from the datatype registry for extension dada2_errorrates. galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,168 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:RDS from the datatype registry for extension dada2_mergepairs. galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,168 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.tabular:Tabular from the datatype registry for extension dada2_sequencetable. galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,168 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.tabular:Tabular from the datatype registry for extension dada2_uniques. galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,168 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:RDS from the datatype registry for extension ampvis2. galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,169 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:Binary from the datatype registry for extension ckpt. galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,169 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:Binary from the datatype registry for extension tgz. galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,171 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.media:Wav from the datatype registry for extension wav. galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,171 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.media:Mp3 from the datatype registry for extension mp3. galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,172 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.media:Mkv from the datatype registry for extension mkv. galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,172 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.media:Mp4 from the datatype registry for extension mp4. galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,172 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.media:Flv from the datatype registry for extension flv. galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,172 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.media:Mpg from the datatype registry for extension mpg. galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,172 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.speech:TextGrid from the datatype registry for extension textgrid. galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,172 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.speech:BPF from the datatype registry for extension par. galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,172 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.tabular:Tabular from the datatype registry for extension ffindex. galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,172 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:Data from the datatype registry for extension ffdata. galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,173 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:Pretext from the datatype registry for extension pretext. galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,173 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.text:Html from the datatype registry for extension immuneml_receptors.html. galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,173 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:HexrdMaterials from the datatype registry for extension hexrd.materials.h5. galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,173 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:Npz from the datatype registry for extension npz. galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,173 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:HexrdImagesNpz from the datatype registry for extension hexrd.images.npz. galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,173 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:HexrdEtaOmeNpz from the datatype registry for extension hexrd.eta_ome.npz. galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,173 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:Npz from the datatype registry for extension hexrd.scored_orientations.npz. galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,173 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.tabular:Tabular from the datatype registry for extension hexrd.accepted_orientations. galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,173 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.text:Yaml from the datatype registry for extension hexrd.yml. galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,173 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.constructive_solid_geometry:NeperTess from the datatype registry for extension neper.tess. galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,174 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.constructive_solid_geometry:NeperTesr from the datatype registry for extension neper.tesr. galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,174 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.constructive_solid_geometry:NeperPoints from the datatype registry for extension neper.points. galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,174 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.constructive_solid_geometry:NeperPointsTabular from the datatype registry for extension neper.points.tsv. galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,174 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.constructive_solid_geometry:NeperMultiScaleCell from the datatype registry for extension neper.mscell. galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,174 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.constructive_solid_geometry:GmshMsh from the datatype registry for extension gmsh.msh. galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,174 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.constructive_solid_geometry:GmshGeo from the datatype registry for extension gmsh.geo. galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,174 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.constructive_solid_geometry:ZsetGeof from the datatype registry for extension zset.geof. galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,174 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:Binary from the datatype registry for extension stl. galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,174 [pN:main,p:78505,tN:MainThread] Overriding conflicting datatype with extension 'stl', using datatype from /scratch/rico/galaxy/lib/galaxy/config/sample/datatypes_conf.xml.sample. galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,174 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.text:Text from the datatype registry for extension pov. galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,174 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.text:PithyaResult from the datatype registry for extension pithya.result. galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,174 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.text:PithyaProperty from the datatype registry for extension pithya.property. galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,174 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.text:PithyaModel from the datatype registry for extension pithya.model. galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,175 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.text:BCSLts from the datatype registry for extension bcsl.ts. galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,175 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.text:BCSLmodel from the datatype registry for extension bcsl.model. galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,175 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.text:StormSample from the datatype registry for extension storm.sample. galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,175 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.text:StormCheck from the datatype registry for extension storm.check. galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,175 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.text:CTLresult from the datatype registry for extension ctl.result. galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,175 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.text:Castep from the datatype registry for extension castep. galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,175 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.text:Param from the datatype registry for extension param. galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,175 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.text:FormattedDensity from the datatype registry for extension den_fmt. galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,176 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.larch:AthenaProject from the datatype registry for extension prj. galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,176 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.larch:FEFFInput from the datatype registry for extension inp. galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,176 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.tabular:CSV from the datatype registry for extension sp. galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,176 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.tabular:CSV from the datatype registry for extension gds. galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,176 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.tabular:CSV from the datatype registry for extension feff. galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,176 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension feffit. galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,176 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:Binary from the datatype registry for extension bil. galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,176 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension hdr. galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,177 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.gis:Shapefile from the datatype registry for extension shp. galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,177 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:FITS from the datatype registry for extension fits. galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,177 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.chain:Chain from the datatype registry for extension chain. galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,177 [pN:main,p:78505,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.plant_tribes:PlantTribesKsComponents' galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,178 [pN:main,p:78505,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.plant_tribes:Smat' galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,178 [pN:main,p:78505,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.mothur:Sabund' galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,178 [pN:main,p:78505,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.mothur:Otu' galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,178 [pN:main,p:78505,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.mothur:GroupAbund' galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,178 [pN:main,p:78505,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.mothur:SecondaryStructureMap' galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,178 [pN:main,p:78505,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.mothur:LowerTriangleDistanceMatrix' galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,178 [pN:main,p:78505,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.mothur:SquareDistanceMatrix' galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,178 [pN:main,p:78505,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.mothur:PairwiseDistanceMatrix' galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,178 [pN:main,p:78505,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.mothur:Oligos' galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,178 [pN:main,p:78505,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.mothur:Quantile' galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,178 [pN:main,p:78505,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.mothur:Frequency' galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,178 [pN:main,p:78505,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.mothur:LaneMask' galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,178 [pN:main,p:78505,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.mothur:RefTaxonomy' galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,178 [pN:main,p:78505,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.mothur:Axes' galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,178 [pN:main,p:78505,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.constructive_solid_geometry:PlyAscii' galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,178 [pN:main,p:78505,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.constructive_solid_geometry:PlyBinary' galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,178 [pN:main,p:78505,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.constructive_solid_geometry:VtkAscii' galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,178 [pN:main,p:78505,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.constructive_solid_geometry:VtkBinary' galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,178 [pN:main,p:78505,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.constructive_solid_geometry:NeperTess' galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,178 [pN:main,p:78505,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.constructive_solid_geometry:NeperTesr' galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,178 [pN:main,p:78505,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.constructive_solid_geometry:GmshMsh' galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,178 [pN:main,p:78505,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.goldenpath:GoldenPath' galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,179 [pN:main,p:78505,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.interval:ScIdx' galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,179 [pN:main,p:78505,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.tabular:Vcf' galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,179 [pN:main,p:78505,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.binary:JP2' galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,179 [pN:main,p:78505,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.binary:TwoBit' galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,179 [pN:main,p:78505,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.binary:GeminiSQLite' galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,179 [pN:main,p:78505,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.binary:SQmass' galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,179 [pN:main,p:78505,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.binary:MzSQlite' galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,179 [pN:main,p:78505,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.binary:OSW' galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,179 [pN:main,p:78505,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.binary:PQP' galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,179 [pN:main,p:78505,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.binary:IdpDB' galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,179 [pN:main,p:78505,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.binary:ElibSQlite' galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,179 [pN:main,p:78505,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.binary:DlibSQlite' galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,179 [pN:main,p:78505,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.binary:BlibSQlite' galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,179 [pN:main,p:78505,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.binary:ChiraSQLite' galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,179 [pN:main,p:78505,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.binary:CuffDiffSQlite' galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,179 [pN:main,p:78505,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.binary:GAFASQLite' galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,179 [pN:main,p:78505,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.binary:NcbiTaxonomySQlite' galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,179 [pN:main,p:78505,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.binary:SQlite' galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,179 [pN:main,p:78505,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.binary:H5MLM' galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,179 [pN:main,p:78505,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.binary:Cool' galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,179 [pN:main,p:78505,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.binary:MCool' galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,179 [pN:main,p:78505,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.binary:Loom' galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,179 [pN:main,p:78505,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.binary:Anndata' galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,179 [pN:main,p:78505,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.binary:Biom2' galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,180 [pN:main,p:78505,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.binary:HexrdMaterials' galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,180 [pN:main,p:78505,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.binary:H5' galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,180 [pN:main,p:78505,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.binary:Grib' galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,180 [pN:main,p:78505,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.binary:HexrdImagesNpz' galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,180 [pN:main,p:78505,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.binary:HexrdEtaOmeNpz' galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,180 [pN:main,p:78505,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.binary:Npz' galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,180 [pN:main,p:78505,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.binary:Bam' galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,180 [pN:main,p:78505,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.binary:BamQuerynameSorted' galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,180 [pN:main,p:78505,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.binary:BamNative' galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,180 [pN:main,p:78505,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.binary:CRAM' galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,180 [pN:main,p:78505,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.binary:Sff' galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,180 [pN:main,p:78505,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.binary:Sra' galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,180 [pN:main,p:78505,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.binary:NetCDF' galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,180 [pN:main,p:78505,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.binary:DAA' galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,180 [pN:main,p:78505,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.binary:RMA6' galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,180 [pN:main,p:78505,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.binary:DMND' galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,180 [pN:main,p:78505,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.binary:Parquet' galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,180 [pN:main,p:78505,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.binary:BafTar' galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,180 [pN:main,p:78505,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.binary:TdfTar' galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,180 [pN:main,p:78505,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.binary:MassHunterTar' galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,180 [pN:main,p:78505,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.binary:MassLynxTar' galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,180 [pN:main,p:78505,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.binary:YepTar' galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,180 [pN:main,p:78505,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.binary:WiffTar' galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,180 [pN:main,p:78505,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.binary:Fast5ArchiveGz' galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,181 [pN:main,p:78505,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.binary:Fast5ArchiveBz2' galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,181 [pN:main,p:78505,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.binary:Fast5Archive' galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,181 [pN:main,p:78505,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.binary:Meryldb' galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,181 [pN:main,p:78505,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.binary:Bref3' galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,181 [pN:main,p:78505,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.binary:PostgresqlArchive' galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,181 [pN:main,p:78505,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.binary:ICM' galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,181 [pN:main,p:78505,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.binary:Idat' galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,181 [pN:main,p:78505,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.binary:Trr' galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,181 [pN:main,p:78505,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.binary:Dcd' galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,181 [pN:main,p:78505,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.binary:Xtc' galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,181 [pN:main,p:78505,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.binary:Cpt' galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,181 [pN:main,p:78505,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.binary:Edr' galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,181 [pN:main,p:78505,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.binary:Vel' galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,181 [pN:main,p:78505,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.binary:Xlsx' galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,181 [pN:main,p:78505,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.qiime2:QIIME2Metadata' galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,181 [pN:main,p:78505,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.qiime2:QIIME2Artifact' galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,181 [pN:main,p:78505,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.qiime2:QIIME2Visualization' galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,181 [pN:main,p:78505,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.binary:CompressedZipArchive' galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,181 [pN:main,p:78505,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.binary:Pretext' galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,181 [pN:main,p:78505,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.annotation:Augustus' galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,181 [pN:main,p:78505,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.xml:Owl' galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,182 [pN:main,p:78505,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.chain:Chain' galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,182 [pN:main,p:78505,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.triples:Rdf' galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,182 [pN:main,p:78505,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.blast:BlastXml' galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,182 [pN:main,p:78505,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.images:Gifti' galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,182 [pN:main,p:78505,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.xml:Phyloxml' galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,182 [pN:main,p:78505,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.xml:Dzi' galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,182 [pN:main,p:78505,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.xml:Sbml' galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,182 [pN:main,p:78505,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.proteomics:Dta2d' galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,182 [pN:main,p:78505,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.proteomics:Edta' galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,182 [pN:main,p:78505,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.proteomics:ConsensusXML' galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,182 [pN:main,p:78505,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.proteomics:IdXML' galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,182 [pN:main,p:78505,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.proteomics:FeatureXML' galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,182 [pN:main,p:78505,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.proteomics:MascotXML' galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,182 [pN:main,p:78505,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.proteomics:Mgf' galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,182 [pN:main,p:78505,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.proteomics:Ms2' galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,182 [pN:main,p:78505,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.proteomics:Msp' galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,182 [pN:main,p:78505,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.proteomics:MzData' galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,182 [pN:main,p:78505,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.proteomics:MzIdentML' galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,182 [pN:main,p:78505,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.proteomics:MzML' galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,182 [pN:main,p:78505,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.proteomics:MzQuantML' galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,182 [pN:main,p:78505,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.proteomics:MzTab' galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,183 [pN:main,p:78505,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.proteomics:MzTab2' galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,183 [pN:main,p:78505,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.proteomics:ParamXml' galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,183 [pN:main,p:78505,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.proteomics:MzXML' galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,183 [pN:main,p:78505,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.proteomics:NmrML' galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,183 [pN:main,p:78505,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.proteomics:Kroenik' galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,183 [pN:main,p:78505,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.proteomics:PepList' galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,183 [pN:main,p:78505,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.proteomics:PSMS' galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,183 [pN:main,p:78505,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.proteomics:PepXml' galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,183 [pN:main,p:78505,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.proteomics:ProtXML' galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,183 [pN:main,p:78505,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.proteomics:SPLib' galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,183 [pN:main,p:78505,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.proteomics:TandemXML' galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,183 [pN:main,p:78505,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.proteomics:ThermoRAW' galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,183 [pN:main,p:78505,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.proteomics:TraML' galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,183 [pN:main,p:78505,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.proteomics:TrafoXML' galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,183 [pN:main,p:78505,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.proteomics:UniProtXML' galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,183 [pN:main,p:78505,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.proteomics:XquestXML' galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,183 [pN:main,p:78505,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.proteomics:XquestSpecXML' galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,183 [pN:main,p:78505,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.proteomics:QCML' galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,183 [pN:main,p:78505,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.proteomics:Wiff' galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,183 [pN:main,p:78505,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.proteomics:PEFF' galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,184 [pN:main,p:78505,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.molecules:CML' galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,184 [pN:main,p:78505,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.xml:GenericXml' galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,184 [pN:main,p:78505,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.triples:HDT' galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,184 [pN:main,p:78505,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.triples:Turtle' galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,184 [pN:main,p:78505,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.triples:NTriples' galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,184 [pN:main,p:78505,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.triples:Jsonld' galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,184 [pN:main,p:78505,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.sequence:Maf' galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,184 [pN:main,p:78505,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.sequence:Lav' galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,184 [pN:main,p:78505,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.sequence:MemePsp' galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,184 [pN:main,p:78505,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.sequence:Fastg' galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,184 [pN:main,p:78505,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.sequence:csFasta' galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,184 [pN:main,p:78505,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.qualityscore:QualityScoreSOLiD' galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,184 [pN:main,p:78505,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.qualityscore:QualityScore454' galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,184 [pN:main,p:78505,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.molecules:SDF' galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,184 [pN:main,p:78505,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.molecules:PDB' galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,184 [pN:main,p:78505,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.molecules:Cell' galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,184 [pN:main,p:78505,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.molecules:CIF' galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,184 [pN:main,p:78505,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.molecules:ExtendedXYZ' galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,184 [pN:main,p:78505,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.molecules:XYZ' galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,185 [pN:main,p:78505,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.molecules:MOL2' galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,185 [pN:main,p:78505,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.molecules:InChI' galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,185 [pN:main,p:78505,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.molecules:FPS' galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,185 [pN:main,p:78505,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.molecules:PQR' galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,185 [pN:main,p:78505,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.molecules:GRO' galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,185 [pN:main,p:78505,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.phylip:Phylip' galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,185 [pN:main,p:78505,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.sequence:Fasta' galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,185 [pN:main,p:78505,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.sequence:FastqCSSanger' galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,185 [pN:main,p:78505,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.sequence:FastqSanger' galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,185 [pN:main,p:78505,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.sequence:Fastq' galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,185 [pN:main,p:78505,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.interval:Wiggle' galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,185 [pN:main,p:78505,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.text:Html' galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,185 [pN:main,p:78505,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.images:Pdf' galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,185 [pN:main,p:78505,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.sequence:Axt' galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,185 [pN:main,p:78505,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.sequence:Genbank' galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,185 [pN:main,p:78505,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.interval:Bed' galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,185 [pN:main,p:78505,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.interval:CustomTrack' galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,186 [pN:main,p:78505,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.interval:Gtf' galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,186 [pN:main,p:78505,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.interval:Gff' galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,186 [pN:main,p:78505,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.interval:Gff3' galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,186 [pN:main,p:78505,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.tabular:Pileup' galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,186 [pN:main,p:78505,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.tabular:Psl' galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,186 [pN:main,p:78505,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.text:Paf' galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,186 [pN:main,p:78505,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.interval:Interval' galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,186 [pN:main,p:78505,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.tabular:Sam' galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,186 [pN:main,p:78505,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.data:Newick' galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,186 [pN:main,p:78505,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.data:Nexus' galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,186 [pN:main,p:78505,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.text:IQTree' galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,186 [pN:main,p:78505,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.text:Obo' galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,186 [pN:main,p:78505,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.text:Arff' galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,186 [pN:main,p:78505,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.text:Ipynb' galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,186 [pN:main,p:78505,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.text:Biom1' galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,186 [pN:main,p:78505,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.text:ImgtJson' galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,187 [pN:main,p:78505,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.text:GeoJson' galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,187 [pN:main,p:78505,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.text:PithyaResult' galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,187 [pN:main,p:78505,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.text:BCSLts' galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,187 [pN:main,p:78505,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.text:Json' galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,187 [pN:main,p:78505,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.genetics:GenotypeMatrix' galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,187 [pN:main,p:78505,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.genetics:DataIn' galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,187 [pN:main,p:78505,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.genetics:MarkerMap' galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,187 [pN:main,p:78505,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.genetics:AllegroLOD' galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,187 [pN:main,p:78505,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.sequence:RNADotPlotMatrix' galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,187 [pN:main,p:78505,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.sequence:DotBracket' galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,187 [pN:main,p:78505,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.tabular:CMAP' galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,187 [pN:main,p:78505,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.tabular:ConnectivityTable' galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,187 [pN:main,p:78505,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.tabular:CSV' galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,187 [pN:main,p:78505,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.metacyto:mSummary' galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,187 [pN:main,p:78505,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.metacyto:mStats' galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,187 [pN:main,p:78505,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.tabular:TSV' galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,188 [pN:main,p:78505,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.tabular:MatrixMarket' galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,188 [pN:main,p:78505,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.msa:Hmmer2' galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,188 [pN:main,p:78505,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.msa:Hmmer3' galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,188 [pN:main,p:78505,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.msa:Stockholm_1_0' galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,188 [pN:main,p:78505,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.msa:MauveXmfa' galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,188 [pN:main,p:78505,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.msa:InfernalCM' galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,188 [pN:main,p:78505,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.annotation:SnapHmm' galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,188 [pN:main,p:78505,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.microarrays:Cel' galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,188 [pN:main,p:78505,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.microarrays:Gpr' galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,188 [pN:main,p:78505,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.microarrays:Gal' galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,188 [pN:main,p:78505,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.binary:RData' galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,188 [pN:main,p:78505,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.binary:RDS' galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,188 [pN:main,p:78505,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.images:Mrc2014' galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,188 [pN:main,p:78505,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.images:Jpg' galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,188 [pN:main,p:78505,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.images:Png' galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,188 [pN:main,p:78505,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.images:OMETiff' galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,189 [pN:main,p:78505,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.images:Tiff' galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,189 [pN:main,p:78505,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.images:Bmp' galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,189 [pN:main,p:78505,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.images:Gif' galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,189 [pN:main,p:78505,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.images:Im' galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,189 [pN:main,p:78505,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.images:Pcd' galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,189 [pN:main,p:78505,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.images:Pcx' galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,189 [pN:main,p:78505,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.images:Ppm' galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,189 [pN:main,p:78505,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.images:Psd' galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,189 [pN:main,p:78505,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.images:Xbm' galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,189 [pN:main,p:78505,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.images:Rgb' galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,189 [pN:main,p:78505,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.images:Pbm' galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,189 [pN:main,p:78505,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.images:Pgm' galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,189 [pN:main,p:78505,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.images:Xpm' galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,189 [pN:main,p:78505,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.images:Eps' galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,189 [pN:main,p:78505,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.images:Rast' galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,189 [pN:main,p:78505,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.images:Tck' galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,190 [pN:main,p:78505,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.images:Trk' galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,190 [pN:main,p:78505,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.images:Nifti1' galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,190 [pN:main,p:78505,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.images:Nifti2' galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,190 [pN:main,p:78505,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.images:Star' galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,190 [pN:main,p:78505,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.media:Wav' galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,190 [pN:main,p:78505,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.media:Mkv' galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,190 [pN:main,p:78505,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.media:Mp3' galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,190 [pN:main,p:78505,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.media:Mp4' galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,190 [pN:main,p:78505,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.media:Flv' galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,190 [pN:main,p:78505,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.media:Mpg' galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,190 [pN:main,p:78505,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.speech:TextGrid' galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,190 [pN:main,p:78505,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.speech:BPF' galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,190 [pN:main,p:78505,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.larch:FEFFInput' galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,190 [pN:main,p:78505,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.larch:AthenaProject' galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,190 [pN:main,p:78505,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.text:Castep' galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,191 [pN:main,p:78505,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.text:CTLresult' galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,191 [pN:main,p:78505,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.text:FormattedDensity' galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,191 [pN:main,p:78505,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.text:Param' galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,191 [pN:main,p:78505,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.text:Yaml' galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,191 [pN:main,p:78505,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.binary:OxliCountGraph' galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,191 [pN:main,p:78505,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.binary:OxliNodeGraph' galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,191 [pN:main,p:78505,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.binary:OxliTagSet' galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,191 [pN:main,p:78505,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.binary:OxliStopTags' galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,191 [pN:main,p:78505,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.binary:OxliSubset' galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,191 [pN:main,p:78505,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.binary:OxliGraphLabels' galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,191 [pN:main,p:78505,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.binary:FITS' galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,191 [pN:main,p:78505,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.neo4j:Neo4jDBzip' galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,191 [pN:main,p:78505,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.text:PithyaProperty' galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,191 [pN:main,p:78505,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.text:PithyaModel' galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,191 [pN:main,p:78505,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.text:BCSLmodel' galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,192 [pN:main,p:78505,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.text:StormSample' galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,192 [pN:main,p:78505,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.text:StormCheck' galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,196 [pN:main,p:78505,tN:MainThread] Build site file [tool-data/shared/ucsc/ucsc_build_sites.txt] not found using sample [tool-data/shared/ucsc/ucsc_build_sites.txt.sample]. galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,196 [pN:main,p:78505,tN:MainThread] Loaded build site 'ucsc': tool-data/shared/ucsc/ucsc_build_sites.txt.sample with display sites: ['main', 'test', 'archaea', 'ucla'] galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,197 [pN:main,p:78505,tN:MainThread] Loaded build site 'gbrowse': tool-data/shared/gbrowse/gbrowse_build_sites.txt with display sites: ['modencode', 'sgd_yeast', 'tair', 'wormbase', 'wormbase_ws120', 'wormbase_ws140', 'wormbase_ws170', 'wormbase_ws180', 'wormbase_ws190', 'wormbase_ws200', 'wormbase_ws204', 'wormbase_ws210', 'wormbase_ws220', 'wormbase_ws225'] galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,197 [pN:main,p:78505,tN:MainThread] Loaded build site 'ensembl': tool-data/shared/ensembl/ensembl_sites.txt galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,197 [pN:main,p:78505,tN:MainThread] Loaded build site 'ensembl_data_url': tool-data/shared/ensembl/ensembl_sites_data_URL.txt galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,197 [pN:main,p:78505,tN:MainThread] Build site file [tool-data/shared/igv/igv_build_sites.txt] not found using sample [tool-data/shared/igv/igv_build_sites.txt.sample]. galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,197 [pN:main,p:78505,tN:MainThread] Loaded build site 'igv': tool-data/shared/igv/igv_build_sites.txt.sample galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,197 [pN:main,p:78505,tN:MainThread] Build site file [tool-data/shared/rviewer/rviewer_build_sites.txt] not found using sample [tool-data/shared/rviewer/rviewer_build_sites.txt.sample]. galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,197 [pN:main,p:78505,tN:MainThread] Loaded build site 'rviewer': tool-data/shared/rviewer/rviewer_build_sites.txt.sample galaxy.util.tool_shed.tool_shed_registry DEBUG 2024-02-23 14:21:35,198 [pN:main,p:78505,tN:MainThread] Loading references to tool sheds from /tmp/tmpqrlh6ih1/tool_sheds_conf.xml galaxy.util.tool_shed.tool_shed_registry DEBUG 2024-02-23 14:21:35,198 [pN:main,p:78505,tN:MainThread] Loaded reference to tool shed: Target Shed galaxy.queue_worker INFO 2024-02-23 14:21:35,198 [pN:main,p:78505,tN:MainThread] Initializing main Galaxy Queue Worker on sqlalchemy+sqlite:////tmp/tmpqrlh6ih1/galaxy.sqlite?isolation_level=IMMEDIATE galaxy.visualization.genomes ERROR 2024-02-23 14:21:35,213 [pN:main,p:78505,tN:MainThread] Error reading twobit.loc Traceback (most recent call last): File "/scratch/rico/galaxy/lib/galaxy/visualization/genomes.py", line 220, in reload_genomes with open(twobit_path) as f: FileNotFoundError: [Errno 2] No such file or directory: '/scratch/rico/galaxy/tool-data/twobit.loc' galaxy.util WARNING 2024-02-23 14:21:35,452 [pN:main,p:78505,tN:MainThread] directory not found: /scratch/rico/galaxy/lib/galaxy/util/../../../config/plugins/activities galaxy.tools WARNING 2024-02-23 14:21:35,452 [pN:main,p:78505,tN:MainThread] The default shed tool config file (/tmp/tmpqrlh6ih1/shed_tool_conf.xml) has been added to the tool_config_file option, if this is not the desired behavior, please set shed_tool_config_file to your primary shed-enabled tool config file galaxy.tool_util.toolbox.base INFO 2024-02-23 14:21:35,452 [pN:main,p:78505,tN:MainThread] Parsing the tool configuration /tmp/tmpqrlh6ih1/tool_conf.xml galaxy.tool_util.toolbox.base DEBUG 2024-02-23 14:21:35,453 [pN:main,p:78505,tN:MainThread] Tool path for tool configuration /tmp/tmpqrlh6ih1/tool_conf.xml is None galaxy.tool_util.toolbox.base DEBUG 2024-02-23 14:21:35,462 [pN:main,p:78505,tN:MainThread] Loaded tool id: upload1, version: 1.1.7 into tool panel.. galaxy.tool_util.toolbox.base DEBUG 2024-02-23 14:21:35,465 [pN:main,p:78505,tN:MainThread] Loaded tool id: ncbi_fcs_adaptor, version: 0.5.0+galaxy0 into tool panel.. galaxy.tools WARNING 2024-02-23 14:21:35,465 [pN:main,p:78505,tN:MainThread] The default shed tool config file (/tmp/tmpqrlh6ih1/shed_tool_conf.xml) has been added to the tool_config_file option, if this is not the desired behavior, please set shed_tool_config_file to your primary shed-enabled tool config file galaxy.tool_util.toolbox.base INFO 2024-02-23 14:21:35,465 [pN:main,p:78505,tN:MainThread] Parsing the tool configuration /tmp/tmpqrlh6ih1/shed_tools_conf.xml galaxy.tool_util.toolbox.base DEBUG 2024-02-23 14:21:35,465 [pN:main,p:78505,tN:MainThread] Tool path for shed tool configuration /tmp/tmpqrlh6ih1/shed_tools_conf.xml is /tmp/tmpqrlh6ih1/shed_tools galaxy.tools WARNING 2024-02-23 14:21:35,465 [pN:main,p:78505,tN:MainThread] The default shed tool config file (/tmp/tmpqrlh6ih1/shed_tool_conf.xml) has been added to the tool_config_file option, if this is not the desired behavior, please set shed_tool_config_file to your primary shed-enabled tool config file galaxy.tool_util.toolbox.base INFO 2024-02-23 14:21:35,466 [pN:main,p:78505,tN:MainThread] Parsing the tool configuration /tmp/tmpqrlh6ih1/empty_tool_conf.xml galaxy.tool_util.toolbox.base DEBUG 2024-02-23 14:21:35,466 [pN:main,p:78505,tN:MainThread] Tool path for tool configuration /tmp/tmpqrlh6ih1/empty_tool_conf.xml is None galaxy.tool_util.toolbox.base DEBUG 2024-02-23 14:21:35,466 [pN:main,p:78505,tN:MainThread] Reading tools from config files finished (13.784 ms) galaxy.tool_util.toolbox.base DEBUG 2024-02-23 14:21:35,468 [pN:main,p:78505,tN:MainThread] Loaded tool id: upload1, version: 1.1.7 into tool panel.. galaxy.tool_util.toolbox.views.edam DEBUG 2024-02-23 14:21:35,468 [pN:main,p:78505,tN:MainThread] Loading EDAM tool panel finished (1.469 ms) galaxy.tool_util.toolbox.base DEBUG 2024-02-23 14:21:35,469 [pN:main,p:78505,tN:MainThread] Loaded tool id: upload1, version: 1.1.7 into tool panel.. galaxy.tool_util.toolbox.views.edam DEBUG 2024-02-23 14:21:35,469 [pN:main,p:78505,tN:MainThread] Loading EDAM tool panel finished (1.281 ms) galaxy.tool_util.toolbox.integrated_panel DEBUG 2024-02-23 14:21:35,469 [pN:main,p:78505,tN:MainThread] Writing integrated tool panel config file to '/tmp/tmpqrlh6ih1/integrated_tool_panel_conf.xml' galaxy.util ERROR 2024-02-23 14:21:35,925 [pN:main,p:78505,tN:MainThread] Error parsing file /tmp/tmpqrlh6ih1 Traceback (most recent call last): File "/scratch/rico/galaxy/lib/galaxy/util/__init__.py", line 305, in parse_xml tree = etree.parse(str(fname), parser=parser) File "src/lxml/etree.pyx", line 3541, in lxml.etree.parse File "src/lxml/parser.pxi", line 1879, in lxml.etree._parseDocument File "src/lxml/parser.pxi", line 1905, in lxml.etree._parseDocumentFromURL File "src/lxml/parser.pxi", line 1808, in lxml.etree._parseDocFromFile File "src/lxml/parser.pxi", line 1180, in lxml.etree._BaseParser._parseDocFromFile File "src/lxml/parser.pxi", line 618, in lxml.etree._ParserContext._handleParseResultDoc File "src/lxml/parser.pxi", line 728, in lxml.etree._handleParseResult File "src/lxml/parser.pxi", line 657, in lxml.etree._raiseParseError File "/tmp/tmpqrlh6ih1", line 1 lxml.etree.XMLSyntaxError: Document is empty, line 1, column 1 galaxy.tools.data_manager.manager ERROR 2024-02-23 14:21:35,926 [pN:main,p:78505,tN:MainThread] There was an error parsing your Data Manager config file "/tmp/tmpqrlh6ih1": Document is empty, line 1, column 1 (tmpqrlh6ih1, line 1) galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,927 [pN:main,p:78505,tN:MainThread] Loaded display application 'ucsc_bam' for datatype 'bam', inherit=False. galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,928 [pN:main,p:78505,tN:MainThread] Loaded display application 'ensembl_bam' for datatype 'bam', inherit=False. galaxy.datatypes.display_applications.application ERROR 2024-02-23 14:21:35,929 [pN:main,p:78505,tN:MainThread] Error loading a set of Dynamic Display Application links: Unable to find data table named "igv_broad_genomes". galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,930 [pN:main,p:78505,tN:MainThread] Loaded display application 'igv_bam' for datatype 'bam', inherit=False. galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,930 [pN:main,p:78505,tN:MainThread] Loaded display application 'igb_bam' for datatype 'bam', inherit=False. galaxy.datatypes.display_applications.application ERROR 2024-02-23 14:21:35,930 [pN:main,p:78505,tN:MainThread] Error loading a set of Dynamic Display Application links: Unable to find data table named "bam_iobio". galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,930 [pN:main,p:78505,tN:MainThread] Loaded display application 'iobio_bam' for datatype 'bam', inherit=False. galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,931 [pN:main,p:78505,tN:MainThread] Loaded display application 'igb_bed' for datatype 'bed', inherit=False. galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,931 [pN:main,p:78505,tN:MainThread] Loaded display application 'igb_bedgraph' for datatype 'bedgraph', inherit=False. galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,932 [pN:main,p:78505,tN:MainThread] Loaded display application 'ucsc_bigbed' for datatype 'bigbed', inherit=False. galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,932 [pN:main,p:78505,tN:MainThread] Loaded display application 'igb_bb' for datatype 'bigbed', inherit=False. galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,932 [pN:main,p:78505,tN:MainThread] Loaded display application 'ucsc_bigwig' for datatype 'bigwig', inherit=False. galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,933 [pN:main,p:78505,tN:MainThread] Loaded display application 'igb_bigwig' for datatype 'bigwig', inherit=False. galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,933 [pN:main,p:78505,tN:MainThread] Loaded display application 'igv_bigwig' for datatype 'bigwig', inherit=False. galaxy.datatypes.display_applications.application ERROR 2024-02-23 14:21:35,933 [pN:main,p:78505,tN:MainThread] Error loading a set of Dynamic Display Application links: Unable to find data table named "intermine_simple_display". galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,933 [pN:main,p:78505,tN:MainThread] Loaded display application 'intermine_simple' for datatype 'intermine_tabular', inherit=False. galaxy.datatypes.display_applications.application ERROR 2024-02-23 14:21:35,934 [pN:main,p:78505,tN:MainThread] Error loading a set of Dynamic Display Application links: Unable to find data table named "igv_broad_genomes". galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,934 [pN:main,p:78505,tN:MainThread] Loaded display application 'igv_fasta' for datatype 'fasta', inherit=True. galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,935 [pN:main,p:78505,tN:MainThread] Loaded display application 'ensembl_gff' for datatype 'gff', inherit=True. galaxy.datatypes.display_applications.application ERROR 2024-02-23 14:21:35,936 [pN:main,p:78505,tN:MainThread] Error loading a set of Dynamic Display Application links: Unable to find data table named "igv_broad_genomes". galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,936 [pN:main,p:78505,tN:MainThread] Loaded display application 'igv_gff' for datatype 'gff', inherit=True. galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,936 [pN:main,p:78505,tN:MainThread] Loaded display application 'igb_gtf' for datatype 'gtf', inherit=False. galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,937 [pN:main,p:78505,tN:MainThread] Loaded display application 'ensembl_interval' for datatype 'interval', inherit=True. galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,938 [pN:main,p:78505,tN:MainThread] Loaded display application 'gbrowse_interval_as_bed' for datatype 'interval', inherit=True. galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,939 [pN:main,p:78505,tN:MainThread] Loaded display application 'rviewer_interval' for datatype 'interval', inherit=True. galaxy.datatypes.display_applications.application ERROR 2024-02-23 14:21:35,939 [pN:main,p:78505,tN:MainThread] Error loading a set of Dynamic Display Application links: Unable to find data table named "igv_broad_genomes". galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,939 [pN:main,p:78505,tN:MainThread] Loaded display application 'igv_interval_as_bed' for datatype 'interval', inherit=True. galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,939 [pN:main,p:78505,tN:MainThread] Loaded display application 'avivator' for datatype 'ome.tiff', inherit=False. galaxy.datatypes.display_applications.application ERROR 2024-02-23 14:21:35,940 [pN:main,p:78505,tN:MainThread] Error loading a set of Dynamic Display Application links: Unable to find data table named "q2view_display". galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,940 [pN:main,p:78505,tN:MainThread] Loaded display application 'q2view' for datatype 'qza', inherit=False. galaxy.datatypes.display_applications.application ERROR 2024-02-23 14:21:35,940 [pN:main,p:78505,tN:MainThread] Error loading a set of Dynamic Display Application links: Unable to find data table named "q2view_display". galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,940 [pN:main,p:78505,tN:MainThread] Loaded display application 'q2view' for datatype 'qzv', inherit=False. galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,940 [pN:main,p:78505,tN:MainThread] Loaded display application 'ucsc_maf_customtrack' for datatype 'mafcustomtrack', inherit=False. galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,941 [pN:main,p:78505,tN:MainThread] Loaded display application 'minerva_tabular' for datatype 'tabular', inherit=False. galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,941 [pN:main,p:78505,tN:MainThread] Loaded display application 'ucsc_vcf' for datatype 'vcf', inherit=False. galaxy.datatypes.display_applications.application ERROR 2024-02-23 14:21:35,942 [pN:main,p:78505,tN:MainThread] Error loading a set of Dynamic Display Application links: Unable to find data table named "igv_broad_genomes". galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,942 [pN:main,p:78505,tN:MainThread] Loaded display application 'igv_vcf' for datatype 'vcf', inherit=False. galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,942 [pN:main,p:78505,tN:MainThread] Loaded display application 'rviewer_vcf' for datatype 'vcf', inherit=True. galaxy.datatypes.display_applications.application ERROR 2024-02-23 14:21:35,942 [pN:main,p:78505,tN:MainThread] Error loading a set of Dynamic Display Application links: Unable to find data table named "vcf_iobio". galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,942 [pN:main,p:78505,tN:MainThread] Loaded display application 'iobio_vcf' for datatype 'vcf', inherit=False. galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,943 [pN:main,p:78505,tN:MainThread] Loaded display application 'igb_wig' for datatype 'wig', inherit=False. galaxy.datatypes.display_applications.application ERROR 2024-02-23 14:21:35,943 [pN:main,p:78505,tN:MainThread] Error loading a set of Dynamic Display Application links: Unable to find data table named "igv_broad_genomes". galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,943 [pN:main,p:78505,tN:MainThread] Loaded display application 'igv_vcf' for datatype 'vcf_bgzip', inherit=False. galaxy.datatypes.display_applications.application ERROR 2024-02-23 14:21:35,944 [pN:main,p:78505,tN:MainThread] Error loading a set of Dynamic Display Application links: Unable to find data table named "igv_broad_genomes". galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,944 [pN:main,p:78505,tN:MainThread] Loaded display application 'igv_genbank' for datatype 'genbank', inherit=False. galaxy.datatypes.display_applications.application ERROR 2024-02-23 14:21:35,944 [pN:main,p:78505,tN:MainThread] Error loading a set of Dynamic Display Application links: Unable to find data table named "biom_simple_display". galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,944 [pN:main,p:78505,tN:MainThread] Loaded display application 'biom_simple' for datatype 'biom1', inherit=False. galaxy.datatypes.display_applications.application ERROR 2024-02-23 14:21:35,944 [pN:main,p:78505,tN:MainThread] Error loading a set of Dynamic Display Application links: Unable to find data table named "icn3d_simple_display". galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,944 [pN:main,p:78505,tN:MainThread] Loaded display application 'icn3d_simple' for datatype 'sdf', inherit=False. galaxy.datatypes.display_applications.application ERROR 2024-02-23 14:21:35,945 [pN:main,p:78505,tN:MainThread] Error loading a set of Dynamic Display Application links: Unable to find data table named "icn3d_simple_display". galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,945 [pN:main,p:78505,tN:MainThread] Loaded display application 'icn3d_simple' for datatype 'mol2', inherit=False. galaxy.datatypes.display_applications.application ERROR 2024-02-23 14:21:35,945 [pN:main,p:78505,tN:MainThread] Error loading a set of Dynamic Display Application links: Unable to find data table named "icn3d_simple_display". galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,945 [pN:main,p:78505,tN:MainThread] Loaded display application 'icn3d_simple' for datatype 'pdb', inherit=False. galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,945 [pN:main,p:78505,tN:MainThread] Loaded display application 'ucsc_trackhub' for datatype 'trackhub', inherit=False. galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,945 [pN:main,p:78505,tN:MainThread] Adding inherited display application 'ensembl_interval' to datatype 'bed' galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,945 [pN:main,p:78505,tN:MainThread] Adding inherited display application 'gbrowse_interval_as_bed' to datatype 'bed' galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,945 [pN:main,p:78505,tN:MainThread] Adding inherited display application 'rviewer_interval' to datatype 'bed' galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,945 [pN:main,p:78505,tN:MainThread] Adding inherited display application 'igv_interval_as_bed' to datatype 'bed' galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,945 [pN:main,p:78505,tN:MainThread] Adding inherited display application 'ensembl_interval' to datatype 'bedgraph' galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,945 [pN:main,p:78505,tN:MainThread] Adding inherited display application 'gbrowse_interval_as_bed' to datatype 'bedgraph' galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,945 [pN:main,p:78505,tN:MainThread] Adding inherited display application 'rviewer_interval' to datatype 'bedgraph' galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,945 [pN:main,p:78505,tN:MainThread] Adding inherited display application 'igv_interval_as_bed' to datatype 'bedgraph' galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,945 [pN:main,p:78505,tN:MainThread] Adding inherited display application 'ensembl_interval' to datatype 'bedstrict' galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,946 [pN:main,p:78505,tN:MainThread] Adding inherited display application 'gbrowse_interval_as_bed' to datatype 'bedstrict' galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,946 [pN:main,p:78505,tN:MainThread] Adding inherited display application 'rviewer_interval' to datatype 'bedstrict' galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,946 [pN:main,p:78505,tN:MainThread] Adding inherited display application 'igv_interval_as_bed' to datatype 'bedstrict' galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,946 [pN:main,p:78505,tN:MainThread] Adding inherited display application 'ensembl_interval' to datatype 'bed6' galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,946 [pN:main,p:78505,tN:MainThread] Adding inherited display application 'gbrowse_interval_as_bed' to datatype 'bed6' galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,946 [pN:main,p:78505,tN:MainThread] Adding inherited display application 'rviewer_interval' to datatype 'bed6' galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,946 [pN:main,p:78505,tN:MainThread] Adding inherited display application 'igv_interval_as_bed' to datatype 'bed6' galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,946 [pN:main,p:78505,tN:MainThread] Adding inherited display application 'ensembl_interval' to datatype 'bed12' galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,946 [pN:main,p:78505,tN:MainThread] Adding inherited display application 'gbrowse_interval_as_bed' to datatype 'bed12' galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,946 [pN:main,p:78505,tN:MainThread] Adding inherited display application 'rviewer_interval' to datatype 'bed12' galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,946 [pN:main,p:78505,tN:MainThread] Adding inherited display application 'igv_interval_as_bed' to datatype 'bed12' galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,946 [pN:main,p:78505,tN:MainThread] Adding inherited display application 'ensembl_interval' to datatype 'probed' galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,946 [pN:main,p:78505,tN:MainThread] Adding inherited display application 'gbrowse_interval_as_bed' to datatype 'probed' galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,946 [pN:main,p:78505,tN:MainThread] Adding inherited display application 'rviewer_interval' to datatype 'probed' galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,946 [pN:main,p:78505,tN:MainThread] Adding inherited display application 'igv_interval_as_bed' to datatype 'probed' galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,946 [pN:main,p:78505,tN:MainThread] Adding inherited display application 'ensembl_interval' to datatype 'chrint' galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,946 [pN:main,p:78505,tN:MainThread] Adding inherited display application 'gbrowse_interval_as_bed' to datatype 'chrint' galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,946 [pN:main,p:78505,tN:MainThread] Adding inherited display application 'rviewer_interval' to datatype 'chrint' galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,946 [pN:main,p:78505,tN:MainThread] Adding inherited display application 'igv_interval_as_bed' to datatype 'chrint' galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,946 [pN:main,p:78505,tN:MainThread] Adding inherited display application 'igv_fasta' to datatype 'fasta.gz' galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,946 [pN:main,p:78505,tN:MainThread] Adding inherited display application 'ensembl_gff' to datatype 'gff3' galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,946 [pN:main,p:78505,tN:MainThread] Adding inherited display application 'igv_gff' to datatype 'gff3' galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,946 [pN:main,p:78505,tN:MainThread] Adding inherited display application 'ensembl_gff' to datatype 'gff3.gz' galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,946 [pN:main,p:78505,tN:MainThread] Adding inherited display application 'igv_gff' to datatype 'gff3.gz' galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,946 [pN:main,p:78505,tN:MainThread] Adding inherited display application 'ensembl_gff' to datatype 'gff3.bz2' galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,946 [pN:main,p:78505,tN:MainThread] Adding inherited display application 'igv_gff' to datatype 'gff3.bz2' galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,946 [pN:main,p:78505,tN:MainThread] Adding inherited display application 'ensembl_gff' to datatype 'gtf' galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,947 [pN:main,p:78505,tN:MainThread] Adding inherited display application 'igv_gff' to datatype 'gtf' galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,947 [pN:main,p:78505,tN:MainThread] Adding inherited display application 'ensembl_interval' to datatype 'encodepeak' galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,947 [pN:main,p:78505,tN:MainThread] Adding inherited display application 'gbrowse_interval_as_bed' to datatype 'encodepeak' galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,948 [pN:main,p:78505,tN:MainThread] Adding inherited display application 'rviewer_interval' to datatype 'encodepeak' galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,948 [pN:main,p:78505,tN:MainThread] Adding inherited display application 'igv_interval_as_bed' to datatype 'encodepeak' galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,948 [pN:main,p:78505,tN:MainThread] Adding inherited display application 'igv_fasta' to datatype 'sequences' galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,948 [pN:main,p:78505,tN:MainThread] Adding inherited display application 'ensembl_interval' to datatype 'interval_tabix.gz' galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,948 [pN:main,p:78505,tN:MainThread] Adding inherited display application 'gbrowse_interval_as_bed' to datatype 'interval_tabix.gz' galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,948 [pN:main,p:78505,tN:MainThread] Adding inherited display application 'rviewer_interval' to datatype 'interval_tabix.gz' galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,948 [pN:main,p:78505,tN:MainThread] Adding inherited display application 'igv_interval_as_bed' to datatype 'interval_tabix.gz' galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,948 [pN:main,p:78505,tN:MainThread] Adding inherited display application 'ensembl_interval' to datatype 'juicer_medium_tabix.gz' galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,948 [pN:main,p:78505,tN:MainThread] Adding inherited display application 'gbrowse_interval_as_bed' to datatype 'juicer_medium_tabix.gz' galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,948 [pN:main,p:78505,tN:MainThread] Adding inherited display application 'rviewer_interval' to datatype 'juicer_medium_tabix.gz' galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,948 [pN:main,p:78505,tN:MainThread] Adding inherited display application 'igv_interval_as_bed' to datatype 'juicer_medium_tabix.gz' galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,948 [pN:main,p:78505,tN:MainThread] Adding inherited display application 'ensembl_interval' to datatype 'bed_tabix.gz' galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,948 [pN:main,p:78505,tN:MainThread] Adding inherited display application 'gbrowse_interval_as_bed' to datatype 'bed_tabix.gz' galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,948 [pN:main,p:78505,tN:MainThread] Adding inherited display application 'rviewer_interval' to datatype 'bed_tabix.gz' galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,948 [pN:main,p:78505,tN:MainThread] Adding inherited display application 'igv_interval_as_bed' to datatype 'bed_tabix.gz' galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,948 [pN:main,p:78505,tN:MainThread] Adding inherited display application 'ensembl_interval' to datatype 'gff_tabix.gz' galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,948 [pN:main,p:78505,tN:MainThread] Adding inherited display application 'gbrowse_interval_as_bed' to datatype 'gff_tabix.gz' galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,948 [pN:main,p:78505,tN:MainThread] Adding inherited display application 'rviewer_interval' to datatype 'gff_tabix.gz' galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,948 [pN:main,p:78505,tN:MainThread] Adding inherited display application 'igv_interval_as_bed' to datatype 'gff_tabix.gz' galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,949 [pN:main,p:78505,tN:MainThread] Adding inherited display application 'igv_fasta' to datatype 'mothur.align' galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,952 [pN:main,p:78505,tN:MainThread] Loaded converter: CONVERTER_uncompressed_to_gz galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,953 [pN:main,p:78505,tN:MainThread] Loaded converter: CONVERTER_gz_to_uncompressed galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,954 [pN:main,p:78505,tN:MainThread] Loaded converter: CONVERTER_uncompressed_to_gz galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,955 [pN:main,p:78505,tN:MainThread] Loaded converter: CONVERTER_gz_to_uncompressed galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,957 [pN:main,p:78505,tN:MainThread] Loaded converter: CONVERTER_uncompressed_to_gz galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,958 [pN:main,p:78505,tN:MainThread] Loaded converter: CONVERTER_gz_to_uncompressed galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,959 [pN:main,p:78505,tN:MainThread] Loaded converter: CONVERTER_Bam_Bai_0 galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,960 [pN:main,p:78505,tN:MainThread] Loaded converter: CONVERTER_bam_to_bigwig_0 galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,961 [pN:main,p:78505,tN:MainThread] Loaded converter: CONVERTER_bam_to_qname_sorted_bam galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,962 [pN:main,p:78505,tN:MainThread] Loaded converter: CONVERTER_bam_to_bigwig_0 galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,963 [pN:main,p:78505,tN:MainThread] Loaded converter: CONVERTER_bam_to_coodinate_sorted_bam galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,964 [pN:main,p:78505,tN:MainThread] Loaded converter: CONVERTER_bam_to_qname_sorted_bam galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,965 [pN:main,p:78505,tN:MainThread] Loaded converter: CONVERTER_cram_to_bam_0 galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,966 [pN:main,p:78505,tN:MainThread] Loaded converter: CONVERTER_bed_to_gff_0 galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,968 [pN:main,p:78505,tN:MainThread] Loaded converter: CONVERTER_interval_to_bgzip_0 galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,970 [pN:main,p:78505,tN:MainThread] Loaded converter: CONVERTER_interval_to_tabix_0 galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,971 [pN:main,p:78505,tN:MainThread] Loaded converter: CONVERTER_bed_gff_or_vcf_to_bigwig_0 galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,972 [pN:main,p:78505,tN:MainThread] Loaded converter: CONVERTER_bed_to_fli_0 galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,973 [pN:main,p:78505,tN:MainThread] Loaded converter: CONVERTER_bedgraph_to_bigwig galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,974 [pN:main,p:78505,tN:MainThread] Loaded converter: CONVERTER_len_to_linecount galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,975 [pN:main,p:78505,tN:MainThread] Loaded converter: CONVERTER_parquet_to_csv galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,977 [pN:main,p:78505,tN:MainThread] Loaded converter: bigwigtowig galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,980 [pN:main,p:78505,tN:MainThread] Loaded converter: CONVERTER_interval_to_bgzip_0 galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,982 [pN:main,p:78505,tN:MainThread] Loaded converter: CONVERTER_interval_to_tabix_0 galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,983 [pN:main,p:78505,tN:MainThread] Loaded converter: CONVERTER_bed_gff_or_vcf_to_bigwig_0 galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,984 [pN:main,p:78505,tN:MainThread] Loaded converter: csv_to_tabular galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,985 [pN:main,p:78505,tN:MainThread] Loaded converter: tabular_to_csv galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,986 [pN:main,p:78505,tN:MainThread] Loaded converter: CONVERTER_fasta_to_tabular galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,987 [pN:main,p:78505,tN:MainThread] Loaded converter: CONVERTER_fasta_to_bowtie_base_index galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,988 [pN:main,p:78505,tN:MainThread] Loaded converter: CONVERTER_fasta_to_bowtie_color_index galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,989 [pN:main,p:78505,tN:MainThread] Loaded converter: CONVERTER_fasta_to_2bit galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,990 [pN:main,p:78505,tN:MainThread] Loaded converter: CONVERTER_fasta_to_len galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,991 [pN:main,p:78505,tN:MainThread] Loaded converter: CONVERTER_fasta_to_fai galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,992 [pN:main,p:78505,tN:MainThread] Loaded converter: CONVERTER_uncompressed_to_gz galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,993 [pN:main,p:78505,tN:MainThread] Loaded converter: CONVERTER_gz_to_uncompressed galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,994 [pN:main,p:78505,tN:MainThread] Loaded converter: CONVERTER_fastq_to_fqtoc0 galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,996 [pN:main,p:78505,tN:MainThread] Loaded converter: CONVERTER_uncompressed_to_gz galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,997 [pN:main,p:78505,tN:MainThread] Loaded converter: CONVERTER_gz_to_uncompressed galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,998 [pN:main,p:78505,tN:MainThread] Loaded converter: CONVERTER_bz2_to_uncompressed galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,999 [pN:main,p:78505,tN:MainThread] Loaded converter: CONVERTER_fastq_to_fqtoc0 galaxy.datatypes.registry DEBUG 2024-02-23 14:21:36,000 [pN:main,p:78505,tN:MainThread] Loaded converter: CONVERTER_uncompressed_to_gz galaxy.datatypes.registry DEBUG 2024-02-23 14:21:36,001 [pN:main,p:78505,tN:MainThread] Loaded converter: CONVERTER_gz_to_uncompressed galaxy.datatypes.registry DEBUG 2024-02-23 14:21:36,002 [pN:main,p:78505,tN:MainThread] Loaded converter: CONVERTER_bz2_to_uncompressed galaxy.datatypes.registry DEBUG 2024-02-23 14:21:36,003 [pN:main,p:78505,tN:MainThread] Loaded converter: CONVERTER_fastq_to_fqtoc0 galaxy.datatypes.registry DEBUG 2024-02-23 14:21:36,005 [pN:main,p:78505,tN:MainThread] Loaded converter: CONVERTER_uncompressed_to_gz galaxy.datatypes.registry DEBUG 2024-02-23 14:21:36,006 [pN:main,p:78505,tN:MainThread] Loaded converter: CONVERTER_gz_to_uncompressed galaxy.datatypes.registry DEBUG 2024-02-23 14:21:36,007 [pN:main,p:78505,tN:MainThread] Loaded converter: CONVERTER_bz2_to_uncompressed galaxy.datatypes.registry DEBUG 2024-02-23 14:21:36,008 [pN:main,p:78505,tN:MainThread] Loaded converter: CONVERTER_fastq_to_fqtoc0 galaxy.datatypes.registry DEBUG 2024-02-23 14:21:36,010 [pN:main,p:78505,tN:MainThread] Loaded converter: CONVERTER_uncompressed_to_gz galaxy.datatypes.registry DEBUG 2024-02-23 14:21:36,011 [pN:main,p:78505,tN:MainThread] Loaded converter: CONVERTER_gz_to_uncompressed galaxy.datatypes.registry DEBUG 2024-02-23 14:21:36,012 [pN:main,p:78505,tN:MainThread] Loaded converter: CONVERTER_bz2_to_uncompressed galaxy.datatypes.registry DEBUG 2024-02-23 14:21:36,013 [pN:main,p:78505,tN:MainThread] Loaded converter: CONVERTER_fastq_to_fqtoc0 galaxy.datatypes.registry DEBUG 2024-02-23 14:21:36,015 [pN:main,p:78505,tN:MainThread] Loaded converter: CONVERTER_uncompressed_to_gz galaxy.datatypes.registry DEBUG 2024-02-23 14:21:36,016 [pN:main,p:78505,tN:MainThread] Loaded converter: CONVERTER_gz_to_uncompressed galaxy.datatypes.registry DEBUG 2024-02-23 14:21:36,017 [pN:main,p:78505,tN:MainThread] Loaded converter: CONVERTER_bz2_to_uncompressed galaxy.datatypes.registry DEBUG 2024-02-23 14:21:36,018 [pN:main,p:78505,tN:MainThread] Loaded converter: CONVERTER_gff_to_bed_0 galaxy.datatypes.registry DEBUG 2024-02-23 14:21:36,019 [pN:main,p:78505,tN:MainThread] Loaded converter: CONVERTER_gff_to_interval_index_0 galaxy.datatypes.registry DEBUG 2024-02-23 14:21:36,020 [pN:main,p:78505,tN:MainThread] Loaded converter: CONVERTER_bed_gff_or_vcf_to_bigwig_0 galaxy.datatypes.registry DEBUG 2024-02-23 14:21:36,021 [pN:main,p:78505,tN:MainThread] Loaded converter: CONVERTER_gff_to_fli_0 galaxy.datatypes.registry DEBUG 2024-02-23 14:21:36,023 [pN:main,p:78505,tN:MainThread] Loaded converter: CONVERTER_interval_to_bgzip_0 galaxy.datatypes.registry DEBUG 2024-02-23 14:21:36,025 [pN:main,p:78505,tN:MainThread] Loaded converter: CONVERTER_interval_to_tabix_0 galaxy.datatypes.registry DEBUG 2024-02-23 14:21:36,026 [pN:main,p:78505,tN:MainThread] Loaded converter: CONVERTER_uncompressed_to_gz galaxy.datatypes.registry DEBUG 2024-02-23 14:21:36,027 [pN:main,p:78505,tN:MainThread] Loaded converter: CONVERTER_gz_to_uncompressed galaxy.datatypes.registry DEBUG 2024-02-23 14:21:36,029 [pN:main,p:78505,tN:MainThread] Loaded converter: CONVERTER_bz2_to_uncompressed galaxy.datatypes.registry DEBUG 2024-02-23 14:21:36,029 [pN:main,p:78505,tN:MainThread] Loaded converter: CONVERTER_gff_to_interval_index_0 galaxy.datatypes.registry DEBUG 2024-02-23 14:21:36,030 [pN:main,p:78505,tN:MainThread] Loaded converter: CONVERTER_bed_gff_or_vcf_to_bigwig_0 galaxy.datatypes.registry DEBUG 2024-02-23 14:21:36,031 [pN:main,p:78505,tN:MainThread] Loaded converter: CONVERTER_interval_to_bed_0 galaxy.datatypes.registry DEBUG 2024-02-23 14:21:36,032 [pN:main,p:78505,tN:MainThread] Loaded converter: CONVERTER_interval_to_bedstrict_0 galaxy.datatypes.registry DEBUG 2024-02-23 14:21:36,033 [pN:main,p:78505,tN:MainThread] Loaded converter: CONVERTER_interval_to_bed6_0 galaxy.datatypes.registry DEBUG 2024-02-23 14:21:36,034 [pN:main,p:78505,tN:MainThread] Loaded converter: CONVERTER_interval_to_bed12_0 galaxy.datatypes.registry DEBUG 2024-02-23 14:21:36,037 [pN:main,p:78505,tN:MainThread] Loaded converter: CONVERTER_interval_to_bgzip_0 galaxy.datatypes.registry DEBUG 2024-02-23 14:21:36,039 [pN:main,p:78505,tN:MainThread] Loaded converter: CONVERTER_interval_to_tabix_0 galaxy.datatypes.registry DEBUG 2024-02-23 14:21:36,040 [pN:main,p:78505,tN:MainThread] Loaded converter: CONVERTER_interval_to_bigwig_0 galaxy.datatypes.registry DEBUG 2024-02-23 14:21:36,041 [pN:main,p:78505,tN:MainThread] Loaded converter: CONVERTER_picard_interval_list_to_bed6 galaxy.datatypes.registry DEBUG 2024-02-23 14:21:36,042 [pN:main,p:78505,tN:MainThread] Loaded converter: CONVERTER_tar_to_directory galaxy.datatypes.registry DEBUG 2024-02-23 14:21:36,043 [pN:main,p:78505,tN:MainThread] Loaded converter: CONVERTER_uncompressed_to_gz galaxy.datatypes.registry DEBUG 2024-02-23 14:21:36,044 [pN:main,p:78505,tN:MainThread] Loaded converter: CONVERTER_gz_to_uncompressed galaxy.datatypes.registry DEBUG 2024-02-23 14:21:36,046 [pN:main,p:78505,tN:MainThread] Loaded converter: CONVERTER_uncompressed_to_gz galaxy.datatypes.registry DEBUG 2024-02-23 14:21:36,047 [pN:main,p:78505,tN:MainThread] Loaded converter: CONVERTER_gz_to_uncompressed galaxy.datatypes.registry DEBUG 2024-02-23 14:21:36,048 [pN:main,p:78505,tN:MainThread] Loaded converter: CONVERTER_uncompressed_to_gz galaxy.datatypes.registry DEBUG 2024-02-23 14:21:36,049 [pN:main,p:78505,tN:MainThread] Loaded converter: CONVERTER_gz_to_uncompressed galaxy.datatypes.registry DEBUG 2024-02-23 14:21:36,050 [pN:main,p:78505,tN:MainThread] Loaded converter: CONVERTER_maf_to_fasta_0 galaxy.datatypes.registry DEBUG 2024-02-23 14:21:36,051 [pN:main,p:78505,tN:MainThread] Loaded converter: CONVERTER_maf_to_interval_0 galaxy.datatypes.registry DEBUG 2024-02-23 14:21:36,053 [pN:main,p:78505,tN:MainThread] Loaded converter: CONVERTER_interval_to_tabix_0 galaxy.datatypes.registry DEBUG 2024-02-23 14:21:36,056 [pN:main,p:78505,tN:MainThread] Loaded converter: CONVERTER_interval_to_bgzip_0 galaxy.datatypes.registry DEBUG 2024-02-23 14:21:36,057 [pN:main,p:78505,tN:MainThread] Loaded converter: CONVERTER_bed_gff_or_vcf_to_bigwig_0 galaxy.datatypes.registry DEBUG 2024-02-23 14:21:36,059 [pN:main,p:78505,tN:MainThread] Loaded converter: CONVERTER_interval_to_bgzip_0 galaxy.datatypes.registry DEBUG 2024-02-23 14:21:36,061 [pN:main,p:78505,tN:MainThread] Loaded converter: CONVERTER_interval_to_tabix_0 galaxy.datatypes.registry DEBUG 2024-02-23 14:21:36,062 [pN:main,p:78505,tN:MainThread] Loaded converter: CONVERTER_sam_to_unsorted_bam galaxy.datatypes.registry DEBUG 2024-02-23 14:21:36,063 [pN:main,p:78505,tN:MainThread] Loaded converter: CONVERTER_bam_to_coodinate_sorted_bam galaxy.datatypes.registry DEBUG 2024-02-23 14:21:36,064 [pN:main,p:78505,tN:MainThread] Loaded converter: CONVERTER_bam_to_qname_sorted_bam galaxy.datatypes.registry DEBUG 2024-02-23 14:21:36,065 [pN:main,p:78505,tN:MainThread] Loaded converter: CONVERTER_sam_to_bigwig_0 galaxy.datatypes.registry DEBUG 2024-02-23 14:21:36,066 [pN:main,p:78505,tN:MainThread] Loaded converter: tabular_to_dbnsfp galaxy.datatypes.registry DEBUG 2024-02-23 14:21:36,067 [pN:main,p:78505,tN:MainThread] Loaded converter: tabular_to_csv galaxy.datatypes.registry DEBUG 2024-02-23 14:21:36,069 [pN:main,p:78505,tN:MainThread] Loaded converter: CONVERTER_uncompressed_to_gz galaxy.datatypes.registry DEBUG 2024-02-23 14:21:36,070 [pN:main,p:78505,tN:MainThread] Loaded converter: CONVERTER_gz_to_uncompressed galaxy.datatypes.registry DEBUG 2024-02-23 14:21:36,072 [pN:main,p:78505,tN:MainThread] Loaded converter: CONVERTER_interval_to_bgzip_0 galaxy.datatypes.registry DEBUG 2024-02-23 14:21:36,073 [pN:main,p:78505,tN:MainThread] Loaded converter: CONVERTER_vcf_to_vcf_bgzip_0 galaxy.datatypes.registry DEBUG 2024-02-23 14:21:36,075 [pN:main,p:78505,tN:MainThread] Loaded converter: CONVERTER_interval_to_tabix_0 galaxy.datatypes.registry DEBUG 2024-02-23 14:21:36,076 [pN:main,p:78505,tN:MainThread] Loaded converter: CONVERTER_bed_gff_or_vcf_to_bigwig_0 galaxy.datatypes.registry DEBUG 2024-02-23 14:21:36,078 [pN:main,p:78505,tN:MainThread] Loaded converter: CONVERTER_uncompressed_to_gz galaxy.datatypes.registry DEBUG 2024-02-23 14:21:36,079 [pN:main,p:78505,tN:MainThread] Loaded converter: CONVERTER_bcf_uncompressed_to_bcf galaxy.datatypes.registry DEBUG 2024-02-23 14:21:36,080 [pN:main,p:78505,tN:MainThread] Loaded converter: CONVERTER_bcf_uncompressed_to_bcf galaxy.datatypes.registry DEBUG 2024-02-23 14:21:36,081 [pN:main,p:78505,tN:MainThread] Loaded converter: CONVERTER_wig_to_bigwig galaxy.datatypes.registry DEBUG 2024-02-23 14:21:36,082 [pN:main,p:78505,tN:MainThread] Loaded converter: CONVERTER_wiggle_to_interval_0 galaxy.datatypes.registry DEBUG 2024-02-23 14:21:36,084 [pN:main,p:78505,tN:MainThread] Loaded converter: CONVERTER_vcf_bgzip_to_tabix_0 galaxy.datatypes.registry DEBUG 2024-02-23 14:21:36,085 [pN:main,p:78505,tN:MainThread] Loaded converter: CONVERTER_gz_to_uncompressed galaxy.datatypes.registry DEBUG 2024-02-23 14:21:36,085 [pN:main,p:78505,tN:MainThread] Loaded converter: lped2fpedconvert galaxy.datatypes.registry DEBUG 2024-02-23 14:21:36,086 [pN:main,p:78505,tN:MainThread] Loaded converter: lped2pbedconvert galaxy.datatypes.registry DEBUG 2024-02-23 14:21:36,087 [pN:main,p:78505,tN:MainThread] Loaded converter: pbed2lpedconvert galaxy.datatypes.registry DEBUG 2024-02-23 14:21:36,088 [pN:main,p:78505,tN:MainThread] Loaded converter: pbed2ldindepconvert galaxy.datatypes.registry DEBUG 2024-02-23 14:21:36,089 [pN:main,p:78505,tN:MainThread] Loaded converter: CONVERTER_uncompressed_to_gz galaxy.datatypes.registry DEBUG 2024-02-23 14:21:36,091 [pN:main,p:78505,tN:MainThread] Loaded converter: CONVERTER_gz_to_uncompressed galaxy.datatypes.registry DEBUG 2024-02-23 14:21:36,092 [pN:main,p:78505,tN:MainThread] Loaded converter: CONVERTER_biom galaxy.datatypes.registry DEBUG 2024-02-23 14:21:36,094 [pN:main,p:78505,tN:MainThread] Loaded converter: CONVERTER_biom galaxy.datatypes.registry DEBUG 2024-02-23 14:21:36,099 [pN:main,p:78505,tN:MainThread] Loaded converter: CONVERTER_molecules galaxy.datatypes.registry DEBUG 2024-02-23 14:21:36,104 [pN:main,p:78505,tN:MainThread] Loaded converter: CONVERTER_molecules galaxy.datatypes.registry DEBUG 2024-02-23 14:21:36,109 [pN:main,p:78505,tN:MainThread] Loaded converter: CONVERTER_molecules galaxy.datatypes.registry DEBUG 2024-02-23 14:21:36,110 [pN:main,p:78505,tN:MainThread] Loaded converter: CONVERTER_SMILES_to_MOL galaxy.datatypes.registry DEBUG 2024-02-23 14:21:36,115 [pN:main,p:78505,tN:MainThread] Loaded converter: CONVERTER_molecules galaxy.datatypes.registry DEBUG 2024-02-23 14:21:36,116 [pN:main,p:78505,tN:MainThread] Loaded converter: CONVERTER_smiles_to_smiles galaxy.datatypes.registry DEBUG 2024-02-23 14:21:36,121 [pN:main,p:78505,tN:MainThread] Loaded converter: CONVERTER_molecules galaxy.datatypes.registry DEBUG 2024-02-23 14:21:36,126 [pN:main,p:78505,tN:MainThread] Loaded converter: CONVERTER_molecules galaxy.datatypes.registry DEBUG 2024-02-23 14:21:36,131 [pN:main,p:78505,tN:MainThread] Loaded converter: CONVERTER_molecules galaxy.datatypes.registry DEBUG 2024-02-23 14:21:36,136 [pN:main,p:78505,tN:MainThread] Loaded converter: CONVERTER_molecules galaxy.datatypes.registry DEBUG 2024-02-23 14:21:36,141 [pN:main,p:78505,tN:MainThread] Loaded converter: CONVERTER_molecules galaxy.datatypes.registry DEBUG 2024-02-23 14:21:36,146 [pN:main,p:78505,tN:MainThread] Loaded converter: CONVERTER_molecules galaxy.datatypes.registry DEBUG 2024-02-23 14:21:36,147 [pN:main,p:78505,tN:MainThread] Loaded converter: CONVERTER_inchi_to_mol galaxy.datatypes.registry DEBUG 2024-02-23 14:21:36,152 [pN:main,p:78505,tN:MainThread] Loaded converter: CONVERTER_molecules galaxy.datatypes.registry DEBUG 2024-02-23 14:21:36,157 [pN:main,p:78505,tN:MainThread] Loaded converter: CONVERTER_molecules galaxy.datatypes.registry DEBUG 2024-02-23 14:21:36,163 [pN:main,p:78505,tN:MainThread] Loaded converter: CONVERTER_molecules galaxy.datatypes.registry DEBUG 2024-02-23 14:21:36,168 [pN:main,p:78505,tN:MainThread] Loaded converter: CONVERTER_molecules galaxy.datatypes.registry DEBUG 2024-02-23 14:21:36,173 [pN:main,p:78505,tN:MainThread] Loaded converter: CONVERTER_molecules galaxy.datatypes.registry DEBUG 2024-02-23 14:21:36,178 [pN:main,p:78505,tN:MainThread] Loaded converter: CONVERTER_molecules galaxy.datatypes.registry DEBUG 2024-02-23 14:21:36,183 [pN:main,p:78505,tN:MainThread] Loaded converter: CONVERTER_molecules galaxy.datatypes.registry DEBUG 2024-02-23 14:21:36,188 [pN:main,p:78505,tN:MainThread] Loaded converter: CONVERTER_molecules galaxy.datatypes.registry DEBUG 2024-02-23 14:21:36,193 [pN:main,p:78505,tN:MainThread] Loaded converter: CONVERTER_molecules galaxy.datatypes.registry DEBUG 2024-02-23 14:21:36,198 [pN:main,p:78505,tN:MainThread] Loaded converter: CONVERTER_molecules galaxy.datatypes.registry DEBUG 2024-02-23 14:21:36,199 [pN:main,p:78505,tN:MainThread] Loaded converter: CONVERTER_mol2_to_mol galaxy.datatypes.registry DEBUG 2024-02-23 14:21:36,204 [pN:main,p:78505,tN:MainThread] Loaded converter: CONVERTER_molecules galaxy.datatypes.registry DEBUG 2024-02-23 14:21:36,206 [pN:main,p:78505,tN:MainThread] Loaded converter: CONVERTER_cml_to_smiles galaxy.datatypes.registry DEBUG 2024-02-23 14:21:36,211 [pN:main,p:78505,tN:MainThread] Loaded converter: CONVERTER_molecules galaxy.datatypes.registry DEBUG 2024-02-23 14:21:36,216 [pN:main,p:78505,tN:MainThread] Loaded converter: CONVERTER_molecules galaxy.datatypes.registry DEBUG 2024-02-23 14:21:36,221 [pN:main,p:78505,tN:MainThread] Loaded converter: CONVERTER_molecules galaxy.datatypes.registry DEBUG 2024-02-23 14:21:36,223 [pN:main,p:78505,tN:MainThread] Loaded converter: CONVERTER_Pdb_to_Gro_0 galaxy.datatypes.registry DEBUG 2024-02-23 14:21:36,224 [pN:main,p:78505,tN:MainThread] Loaded converter: CONVERTER_mdconvert galaxy.datatypes.registry DEBUG 2024-02-23 14:21:36,226 [pN:main,p:78505,tN:MainThread] Loaded converter: CONVERTER_mdconvert galaxy.datatypes.registry DEBUG 2024-02-23 14:21:36,228 [pN:main,p:78505,tN:MainThread] Loaded converter: CONVERTER_mdconvert galaxy.datatypes.registry DEBUG 2024-02-23 14:21:36,231 [pN:main,p:78505,tN:MainThread] Loaded converter: CONVERTER_mdconvert galaxy.datatypes.registry DEBUG 2024-02-23 14:21:36,233 [pN:main,p:78505,tN:MainThread] Loaded converter: CONVERTER_mdconvert galaxy.datatypes.registry DEBUG 2024-02-23 14:21:36,235 [pN:main,p:78505,tN:MainThread] Loaded converter: CONVERTER_mdconvert galaxy.datatypes.registry DEBUG 2024-02-23 14:21:36,236 [pN:main,p:78505,tN:MainThread] Loaded converter: CONVERTER_Gro_to_Pdb_0 galaxy.datatypes.registry DEBUG 2024-02-23 14:21:36,237 [pN:main,p:78505,tN:MainThread] Loaded converter: CONVERTER_ref_to_seq_taxomony galaxy.datatypes.registry DEBUG 2024-02-23 14:21:36,238 [pN:main,p:78505,tN:MainThread] Loaded converter: CONVERTER_neostorezip_to_neostore galaxy.datatypes.registry DEBUG 2024-02-23 14:21:36,240 [pN:main,p:78505,tN:MainThread] Loaded external metadata tool: __SET_METADATA__ galaxy.tools.special_tools DEBUG 2024-02-23 14:21:36,241 [pN:main,p:78505,tN:MainThread] Loaded history export tool: __EXPORT_HISTORY__ galaxy.tools.special_tools DEBUG 2024-02-23 14:21:36,242 [pN:main,p:78505,tN:MainThread] Loaded history export to uri tool: __EXPORT_HISTORY_TO_URI__ galaxy.tools.special_tools DEBUG 2024-02-23 14:21:36,243 [pN:main,p:78505,tN:MainThread] Loaded history import tool: __IMPORT_HISTORY__ galaxy.tools.special_tools DEBUG 2024-02-23 14:21:36,244 [pN:main,p:78505,tN:MainThread] Loaded data fetch tool: __DATA_FETCH__ galaxy.visualization.plugins.registry INFO 2024-02-23 14:21:36,245 [pN:main,p:78505,tN:MainThread] VisualizationsRegistry, loaded plugin: PCA_3Dplot galaxy.visualization.plugins.registry INFO 2024-02-23 14:21:36,246 [pN:main,p:78505,tN:MainThread] VisualizationsRegistry, loaded plugin: aequatus galaxy.visualization.plugins.registry INFO 2024-02-23 14:21:36,247 [pN:main,p:78505,tN:MainThread] VisualizationsRegistry, loaded plugin: annotate_image galaxy.visualization.plugins.config_parser INFO 2024-02-23 14:21:36,248 [pN:main,p:78505,tN:MainThread] template syntax is deprecated: use entry_point instead galaxy.visualization.plugins.registry INFO 2024-02-23 14:21:36,248 [pN:main,p:78505,tN:MainThread] VisualizationsRegistry, loaded plugin: chiraviz galaxy.visualization.plugins.config_parser INFO 2024-02-23 14:21:36,249 [pN:main,p:78505,tN:MainThread] Visualizations plugin disabled: Circster. Skipping... galaxy.visualization.plugins.config_parser INFO 2024-02-23 14:21:36,249 [pN:main,p:78505,tN:MainThread] template syntax is deprecated: use entry_point instead galaxy.visualization.plugins.registry INFO 2024-02-23 14:21:36,249 [pN:main,p:78505,tN:MainThread] VisualizationsRegistry, loaded plugin: csg galaxy.visualization.plugins.registry INFO 2024-02-23 14:21:36,250 [pN:main,p:78505,tN:MainThread] VisualizationsRegistry, loaded plugin: cytoscape galaxy.visualization.plugins.registry INFO 2024-02-23 14:21:36,251 [pN:main,p:78505,tN:MainThread] VisualizationsRegistry, loaded plugin: drawrna galaxy.visualization.plugins.registry INFO 2024-02-23 14:21:36,252 [pN:main,p:78505,tN:MainThread] VisualizationsRegistry, loaded plugin: editor galaxy.visualization.plugins.registry INFO 2024-02-23 14:21:36,253 [pN:main,p:78505,tN:MainThread] VisualizationsRegistry, loaded plugin: example galaxy.visualization.plugins.config_parser INFO 2024-02-23 14:21:36,254 [pN:main,p:78505,tN:MainThread] template syntax is deprecated: use entry_point instead galaxy.visualization.plugins.registry INFO 2024-02-23 14:21:36,255 [pN:main,p:78505,tN:MainThread] VisualizationsRegistry, loaded plugin: fits_image_viewer galaxy.visualization.plugins.config_parser INFO 2024-02-23 14:21:36,256 [pN:main,p:78505,tN:MainThread] template syntax is deprecated: use entry_point instead galaxy.visualization.plugins.registry INFO 2024-02-23 14:21:36,256 [pN:main,p:78505,tN:MainThread] VisualizationsRegistry, loaded plugin: graphviz galaxy.visualization.plugins.registry INFO 2024-02-23 14:21:36,256 [pN:main,p:78505,tN:MainThread] VisualizationsRegistry, loaded plugin: h5web galaxy.visualization.plugins.registry INFO 2024-02-23 14:21:36,259 [pN:main,p:78505,tN:MainThread] VisualizationsRegistry, loaded plugin: heatmap_cluster galaxy.visualization.plugins.registry INFO 2024-02-23 14:21:36,261 [pN:main,p:78505,tN:MainThread] VisualizationsRegistry, loaded plugin: heatmap_default galaxy.visualization.plugins.config_parser INFO 2024-02-23 14:21:36,261 [pN:main,p:78505,tN:MainThread] template syntax is deprecated: use entry_point instead galaxy.visualization.plugins.registry INFO 2024-02-23 14:21:36,261 [pN:main,p:78505,tN:MainThread] VisualizationsRegistry, loaded plugin: hivtrace galaxy.visualization.plugins.config_parser INFO 2024-02-23 14:21:36,262 [pN:main,p:78505,tN:MainThread] template syntax is deprecated: use entry_point instead galaxy.visualization.plugins.registry INFO 2024-02-23 14:21:36,262 [pN:main,p:78505,tN:MainThread] VisualizationsRegistry, loaded plugin: hyphyvision galaxy.visualization.plugins.registry INFO 2024-02-23 14:21:36,264 [pN:main,p:78505,tN:MainThread] VisualizationsRegistry, loaded plugin: jqplot_bar galaxy.visualization.plugins.registry INFO 2024-02-23 14:21:36,267 [pN:main,p:78505,tN:MainThread] VisualizationsRegistry, loaded plugin: jqplot_box galaxy.visualization.plugins.registry INFO 2024-02-23 14:21:36,269 [pN:main,p:78505,tN:MainThread] VisualizationsRegistry, loaded plugin: jqplot_histogram galaxy.visualization.plugins.registry INFO 2024-02-23 14:21:36,271 [pN:main,p:78505,tN:MainThread] VisualizationsRegistry, loaded plugin: jqplot_line galaxy.visualization.plugins.registry INFO 2024-02-23 14:21:36,273 [pN:main,p:78505,tN:MainThread] VisualizationsRegistry, loaded plugin: jqplot_scatter galaxy.visualization.plugins.config_parser INFO 2024-02-23 14:21:36,273 [pN:main,p:78505,tN:MainThread] template syntax is deprecated: use entry_point instead galaxy.visualization.plugins.registry INFO 2024-02-23 14:21:36,273 [pN:main,p:78505,tN:MainThread] VisualizationsRegistry, loaded plugin: audio_player galaxy.visualization.plugins.config_parser INFO 2024-02-23 14:21:36,274 [pN:main,p:78505,tN:MainThread] template syntax is deprecated: use entry_point instead galaxy.visualization.plugins.registry INFO 2024-02-23 14:21:36,274 [pN:main,p:78505,tN:MainThread] VisualizationsRegistry, loaded plugin: video_player galaxy.visualization.plugins.registry INFO 2024-02-23 14:21:36,274 [pN:main,p:78505,tN:MainThread] VisualizationsRegistry, loaded plugin: msa galaxy.visualization.plugins.config_parser INFO 2024-02-23 14:21:36,275 [pN:main,p:78505,tN:MainThread] template syntax is deprecated: use entry_point instead galaxy.visualization.plugins.registry INFO 2024-02-23 14:21:36,276 [pN:main,p:78505,tN:MainThread] VisualizationsRegistry, loaded plugin: mvpapp galaxy.visualization.plugins.registry INFO 2024-02-23 14:21:36,277 [pN:main,p:78505,tN:MainThread] VisualizationsRegistry, loaded plugin: ngl galaxy.visualization.plugins.registry INFO 2024-02-23 14:21:36,278 [pN:main,p:78505,tN:MainThread] VisualizationsRegistry, loaded plugin: nora galaxy.visualization.plugins.registry INFO 2024-02-23 14:21:36,280 [pN:main,p:78505,tN:MainThread] VisualizationsRegistry, loaded plugin: nvd3_bar galaxy.visualization.plugins.registry INFO 2024-02-23 14:21:36,282 [pN:main,p:78505,tN:MainThread] VisualizationsRegistry, loaded plugin: nvd3_bar_stacked galaxy.visualization.plugins.registry INFO 2024-02-23 14:21:36,284 [pN:main,p:78505,tN:MainThread] VisualizationsRegistry, loaded plugin: nvd3_histogram galaxy.visualization.plugins.registry INFO 2024-02-23 14:21:36,286 [pN:main,p:78505,tN:MainThread] VisualizationsRegistry, loaded plugin: nvd3_histogram_discrete galaxy.visualization.plugins.registry INFO 2024-02-23 14:21:36,288 [pN:main,p:78505,tN:MainThread] VisualizationsRegistry, loaded plugin: nvd3_horizontal galaxy.visualization.plugins.registry INFO 2024-02-23 14:21:36,290 [pN:main,p:78505,tN:MainThread] VisualizationsRegistry, loaded plugin: nvd3_horizontal_stacked galaxy.visualization.plugins.registry INFO 2024-02-23 14:21:36,292 [pN:main,p:78505,tN:MainThread] VisualizationsRegistry, loaded plugin: nvd3_line galaxy.visualization.plugins.registry INFO 2024-02-23 14:21:36,294 [pN:main,p:78505,tN:MainThread] VisualizationsRegistry, loaded plugin: nvd3_line_focus galaxy.visualization.plugins.registry INFO 2024-02-23 14:21:36,296 [pN:main,p:78505,tN:MainThread] VisualizationsRegistry, loaded plugin: nvd3_pie galaxy.visualization.plugins.registry INFO 2024-02-23 14:21:36,298 [pN:main,p:78505,tN:MainThread] VisualizationsRegistry, loaded plugin: nvd3_scatter galaxy.visualization.plugins.registry INFO 2024-02-23 14:21:36,300 [pN:main,p:78505,tN:MainThread] VisualizationsRegistry, loaded plugin: nvd3_stackedarea galaxy.visualization.plugins.registry INFO 2024-02-23 14:21:36,302 [pN:main,p:78505,tN:MainThread] VisualizationsRegistry, loaded plugin: nvd3_stackedarea_full galaxy.visualization.plugins.registry INFO 2024-02-23 14:21:36,304 [pN:main,p:78505,tN:MainThread] VisualizationsRegistry, loaded plugin: nvd3_stackedarea_stream galaxy.visualization.plugins.registry INFO 2024-02-23 14:21:36,305 [pN:main,p:78505,tN:MainThread] VisualizationsRegistry, loaded plugin: openlayers galaxy.visualization.plugins.registry INFO 2024-02-23 14:21:36,306 [pN:main,p:78505,tN:MainThread] VisualizationsRegistry, loaded plugin: openseadragon galaxy.visualization.plugins.registry INFO 2024-02-23 14:21:36,307 [pN:main,p:78505,tN:MainThread] VisualizationsRegistry, loaded plugin: phylocanvas galaxy.visualization.plugins.registry INFO 2024-02-23 14:21:36,308 [pN:main,p:78505,tN:MainThread] VisualizationsRegistry, loaded plugin: phyloviz galaxy.visualization.plugins.registry INFO 2024-02-23 14:21:36,309 [pN:main,p:78505,tN:MainThread] VisualizationsRegistry, loaded plugin: pv galaxy.visualization.plugins.registry INFO 2024-02-23 14:21:36,310 [pN:main,p:78505,tN:MainThread] VisualizationsRegistry, loaded plugin: scatterplot galaxy.visualization.plugins.config_parser INFO 2024-02-23 14:21:36,310 [pN:main,p:78505,tN:MainThread] Visualizations plugin disabled: Sweepster. Skipping... galaxy.visualization.plugins.registry INFO 2024-02-23 14:21:36,311 [pN:main,p:78505,tN:MainThread] VisualizationsRegistry, loaded plugin: trackster galaxy.visualization.plugins.registry INFO 2024-02-23 14:21:36,311 [pN:main,p:78505,tN:MainThread] VisualizationsRegistry, loaded plugin: ts_visjs galaxy.visualization.plugins.config_parser INFO 2024-02-23 14:21:36,312 [pN:main,p:78505,tN:MainThread] template syntax is deprecated: use entry_point instead galaxy.visualization.plugins.registry INFO 2024-02-23 14:21:36,312 [pN:main,p:78505,tN:MainThread] VisualizationsRegistry, loaded plugin: unipept galaxy.visualization.plugins.registry INFO 2024-02-23 14:21:36,312 [pN:main,p:78505,tN:MainThread] VisualizationsRegistry, loaded plugin: venn galaxy.tours._impl INFO 2024-02-23 14:21:36,337 [pN:main,p:78505,tN:MainThread] Loaded tour 'core.galaxy_ui' galaxy.tours._impl INFO 2024-02-23 14:21:36,354 [pN:main,p:78505,tN:MainThread] Loaded tour 'core.deferred' galaxy.tours._impl INFO 2024-02-23 14:21:36,366 [pN:main,p:78505,tN:MainThread] Loaded tour 'core.history' galaxy.tours._impl INFO 2024-02-23 14:21:36,377 [pN:main,p:78505,tN:MainThread] Loaded tour 'core.windows' galaxy.workflow.scheduling_manager INFO 2024-02-23 14:21:36,383 [pN:main,p:78505,tN:MainThread] No workflow schedulers plugin config file defined, using default scheduler. galaxy.web_stack.handlers INFO 2024-02-23 14:21:36,383 [pN:main,p:78505,tN:MainThread] WorkflowSchedulingManager: No job handler assignment method is set, defaulting to 'HANDLER_ASSIGNMENT_METHODS.DB_SKIP_LOCKED', set the `assign_with` attribute on <handlers> to override the default galaxy.workflow.scheduling_manager DEBUG 2024-02-23 14:21:36,384 [pN:main,p:78505,tN:MainThread] Starting workflow schedulers galaxy.app INFO 2024-02-23 14:21:36,386 [pN:main,p:78505,tN:MainThread] Galaxy app startup finished (2552.949 ms) galaxy.web.framework.base DEBUG 2024-02-23 14:21:36,413 [pN:main,p:78505,tN:MainThread] Enabling 'user' controller, class: User galaxy.web.framework.base DEBUG 2024-02-23 14:21:36,414 [pN:main,p:78505,tN:MainThread] Enabling 'data_manager' controller, class: DataManager galaxy.web.framework.base DEBUG 2024-02-23 14:21:36,415 [pN:main,p:78505,tN:MainThread] Enabling 'async' controller, class: ASync galaxy.web.framework.base DEBUG 2024-02-23 14:21:36,415 [pN:main,p:78505,tN:MainThread] Enabling 'tag' controller, class: TagsController galaxy.web.framework.base DEBUG 2024-02-23 14:21:36,420 [pN:main,p:78505,tN:MainThread] Enabling 'page' controller, class: PageController galaxy.web.framework.base DEBUG 2024-02-23 14:21:36,421 [pN:main,p:78505,tN:MainThread] Enabling 'root' controller, class: RootController galaxy.web.framework.base DEBUG 2024-02-23 14:21:36,421 [pN:main,p:78505,tN:MainThread] Enabling 'tool_runner' controller, class: ToolRunner galaxy.web.framework.base DEBUG 2024-02-23 14:21:36,422 [pN:main,p:78505,tN:MainThread] Enabling 'error' controller, class: Error galaxy.web.framework.base DEBUG 2024-02-23 14:21:36,423 [pN:main,p:78505,tN:MainThread] Enabling 'forms' controller, class: Forms galaxy.web.framework.base DEBUG 2024-02-23 14:21:36,437 [pN:main,p:78505,tN:MainThread] Enabling 'admin_toolshed' controller, class: AdminGalaxy galaxy.web.framework.base DEBUG 2024-02-23 14:21:36,438 [pN:main,p:78505,tN:MainThread] Enabling 'admin_toolshed' controller, class: AdminToolshed galaxy.web.framework.base DEBUG 2024-02-23 14:21:36,439 [pN:main,p:78505,tN:MainThread] Enabling 'visualization' controller, class: VisualizationController galaxy.web.framework.base DEBUG 2024-02-23 14:21:36,440 [pN:main,p:78505,tN:MainThread] Enabling 'shed_tool_static' controller, class: ShedToolStatic galaxy.web.framework.base DEBUG 2024-02-23 14:21:36,440 [pN:main,p:78505,tN:MainThread] Enabling 'authnz' controller, class: JSAppLauncher galaxy.web.framework.base DEBUG 2024-02-23 14:21:36,441 [pN:main,p:78505,tN:MainThread] Enabling 'authnz' controller, class: OIDC galaxy.web.framework.base DEBUG 2024-02-23 14:21:36,442 [pN:main,p:78505,tN:MainThread] Enabling 'workflow' controller, class: WorkflowController galaxy.web.framework.base DEBUG 2024-02-23 14:21:36,444 [pN:main,p:78505,tN:MainThread] Enabling 'history' controller, class: HistoryController galaxy.web.framework.base DEBUG 2024-02-23 14:21:36,474 [pN:main,p:78505,tN:MainThread] Enabling 'dataset' controller, class: DatasetInterface galaxy.web.framework.base DEBUG 2024-02-23 14:21:36,474 [pN:main,p:78505,tN:MainThread] Enabling 'admin' controller, class: AdminGalaxy galaxy.web.framework.base DEBUG 2024-02-23 14:21:37,175 [pN:main,p:78505,tN:MainThread] Enabling 'library_datasets' API controller, class: LibraryDatasetsController galaxy.web.framework.base DEBUG 2024-02-23 14:21:37,328 [pN:main,p:78505,tN:MainThread] Enabling 'jobs' API controller, class: JobController galaxy.web.framework.base DEBUG 2024-02-23 14:21:37,448 [pN:main,p:78505,tN:MainThread] Enabling 'job_files' API controller, class: JobFilesAPIController galaxy.web.framework.base DEBUG 2024-02-23 14:21:37,495 [pN:main,p:78505,tN:MainThread] Enabling 'toolshed' API controller, class: ToolShedController galaxy.web.framework.base DEBUG 2024-02-23 14:21:37,511 [pN:main,p:78505,tN:MainThread] Enabling 'tools' API controller, class: ToolsController galaxy.web.framework.base DEBUG 2024-02-23 14:21:37,632 [pN:main,p:78505,tN:MainThread] Enabling 'trs_consumer' API controller, class: TrsConsumeAPIController galaxy.web.framework.base DEBUG 2024-02-23 14:21:37,633 [pN:main,p:78505,tN:MainThread] Enabling 'history_dataset_extended_metadata' API controller, class: HistoryDatasetExtendMetadataController galaxy.web.framework.base DEBUG 2024-02-23 14:21:37,633 [pN:main,p:78505,tN:MainThread] Enabling 'library_dataset_extended_metadata' API controller, class: LibraryDatasetExtendMetadataController galaxy.web.framework.base DEBUG 2024-02-23 14:21:37,634 [pN:main,p:78505,tN:MainThread] Enabling 'container_resolution' API controller, class: ContainerResolutionAPIController galaxy.web.framework.base DEBUG 2024-02-23 14:21:37,634 [pN:main,p:78505,tN:MainThread] Enabling 'job_ports' API controller, class: JobPortsAPIController galaxy.web.framework.base DEBUG 2024-02-23 14:21:37,635 [pN:main,p:78505,tN:MainThread] Enabling 'tool_dependencies' API controller, class: ToolDependenciesAPIController galaxy.web.framework.base DEBUG 2024-02-23 14:21:37,775 [pN:main,p:78505,tN:MainThread] Enabling 'history_content_provenance' API controller, class: HDAProvenanceController galaxy.web.framework.base DEBUG 2024-02-23 14:21:37,775 [pN:main,p:78505,tN:MainThread] Enabling 'ldda_provenance' API controller, class: LDDAProvenanceController galaxy.web.framework.base DEBUG 2024-02-23 14:21:37,775 [pN:main,p:78505,tN:MainThread] Enabling 'tool_entry_points' API controller, class: ToolEntryPointsAPIController galaxy.web.framework.base DEBUG 2024-02-23 14:21:37,909 [pN:main,p:78505,tN:MainThread] Enabling 'authenticate' API controller, class: AuthenticationController galaxy.web.framework.base DEBUG 2024-02-23 14:21:38,315 [pN:main,p:78505,tN:MainThread] Enabling 'trs_search' API controller, class: TrsSearchAPIController galaxy.web.framework.base DEBUG 2024-02-23 14:21:38,366 [pN:main,p:78505,tN:MainThread] Enabling 'tool_shed_repositories' API controller, class: ToolShedRepositoriesController galaxy.web.framework.base DEBUG 2024-02-23 14:21:38,547 [pN:main,p:78505,tN:MainThread] Enabling 'forms' API controller, class: FormDefinitionAPIController galaxy.web.framework.base DEBUG 2024-02-23 14:21:38,735 [pN:main,p:78505,tN:MainThread] Enabling 'workflows' API controller, class: WorkflowsAPIController galaxy.web.framework.base DEBUG 2024-02-23 14:21:38,735 [pN:main,p:78505,tN:MainThread] Enabling 'uploads' API controller, class: UploadsAPIController galaxy.web.framework.base DEBUG 2024-02-23 14:21:39,227 [pN:main,p:78505,tN:MainThread] Enabling 'history_annotations' API controller, class: HistoryAnnotationsController galaxy.web.framework.base DEBUG 2024-02-23 14:21:39,227 [pN:main,p:78505,tN:MainThread] Enabling 'history_content_annotations' API controller, class: HistoryContentAnnotationsController galaxy.web.framework.base DEBUG 2024-02-23 14:21:39,228 [pN:main,p:78505,tN:MainThread] Enabling 'workflow_annotations' API controller, class: WorkflowAnnotationsController galaxy.web.framework.base DEBUG 2024-02-23 14:21:39,272 [pN:main,p:78505,tN:MainThread] Enabling 'visualizations' API controller, class: VisualizationsController galaxy.web.framework.base DEBUG 2024-02-23 14:21:39,273 [pN:main,p:78505,tN:MainThread] Enabling 'sanitize_allow' API controller, class: SanitizeAllowController galaxy.web.framework.base DEBUG 2024-02-23 14:21:39,273 [pN:main,p:78505,tN:MainThread] Enabling 'page_revisions' API controller, class: PageRevisionsController galaxy.web.framework.base DEBUG 2024-02-23 14:21:39,345 [pN:main,p:78505,tN:MainThread] Enabling 'library_contents' API controller, class: LibraryContentsController galaxy.web.framework.base DEBUG 2024-02-23 14:21:39,463 [pN:main,p:78505,tN:MainThread] Enabling 'users' API controller, class: UserAPIController galaxy.web.framework.base DEBUG 2024-02-23 14:21:39,463 [pN:main,p:78505,tN:MainThread] Enabling 'cloudauthz' API controller, class: CloudAuthzController galaxy.web.framework.base DEBUG 2024-02-23 14:21:39,464 [pN:main,p:78505,tN:MainThread] Enabling 'webhooks' API controller, class: WebhooksController galaxy.web.framework.base DEBUG 2024-02-23 14:21:39,538 [pN:main,p:78505,tN:MainThread] Enabling 'plugins' API controller, class: PluginsController galaxy.web.framework.base DEBUG 2024-02-23 14:21:39,573 [pN:main,p:78505,tN:MainThread] Enabling 'dynamic_tools' API controller, class: DynamicToolsController 2024-02-23 14:21:39,857 INFO success: celery entered RUNNING state, process has stayed up for > than 10 seconds (startsecs) galaxy.webapps.util DEBUG 2024-02-23 14:21:39,857 [pN:main,p:78505,tN:MainThread] Enabling 'paste.httpexceptions' middleware 2024-02-23 14:21:39,858 INFO success: celery-beat entered RUNNING state, process has stayed up for > than 10 seconds (startsecs) galaxy.webapps.util DEBUG 2024-02-23 14:21:39,857 [pN:main,p:78505,tN:MainThread] Enabling 'RemoteUser' middleware galaxy.webapps.util DEBUG 2024-02-23 14:21:39,857 [pN:main,p:78505,tN:MainThread] Enabling 'ErrorMiddleware' middleware galaxy.webapps.util DEBUG 2024-02-23 14:21:39,857 [pN:main,p:78505,tN:MainThread] Enabling 'TusMiddleware' middleware galaxy.webapps.util DEBUG 2024-02-23 14:21:39,857 [pN:main,p:78505,tN:MainThread] Enabling 'XForwardedHostMiddleware' middleware galaxy.webapps.util DEBUG 2024-02-23 14:21:39,857 [pN:main,p:78505,tN:MainThread] Enabling 'RequestIDMiddleware' middleware galaxy.webapps.util DEBUG 2024-02-23 14:21:39,857 [pN:main,p:78505,tN:MainThread] Enabling 'build_url_map' middleware galaxy.webapps.galaxy.buildapp DEBUG 2024-02-23 14:21:39,858 [pN:main,p:78505,tN:MainThread] Prior to webapp return, Galaxy thread <_MainThread(MainThread, started 139838623614784)> is alive. /scratch/rico/galaxy/lib/galaxy/webapps/openapi/utils.py:463: UserWarning: Merging operation with id fetch_json_api_tools_fetch_post with operation with id fetch_form_api_tools_fetch_post. warnings.warn(message) # noqa: B028 [2024-02-23 14:21:41 -0500] [78505] [INFO] Starting gunicorn 21.2.0 [2024-02-23 14:21:41 -0500] [78505] [INFO] Listening at: http://127.0.0.1:9090 (78505) [2024-02-23 14:21:41 -0500] [78505] [INFO] Using worker: galaxy.webapps.galaxy.workers.Worker [2024-02-23 14:21:41 -0500] [78709] [INFO] Booting worker with pid: 78709 galaxy.web_stack DEBUG 2024-02-23 14:21:41,492 [pN:main.1,p:78709,tN:Thread-2] server_name set to: main.1 galaxy.jobs.manager DEBUG 2024-02-23 14:21:41,493 [pN:main.1,p:78709,tN:Thread-2] Initializing job handler galaxy.jobs INFO 2024-02-23 14:21:41,494 [pN:main.1,p:78709,tN:Thread-2] Handler 'main.1' will load all configured runner plugins galaxy.jobs.runners.state_handler_factory DEBUG 2024-02-23 14:21:41,509 [pN:main.1,p:78709,tN:Thread-2] Loaded 'failure' state handler from module galaxy.jobs.runners.state_handlers.resubmit galaxy.jobs DEBUG 2024-02-23 14:21:41,509 [pN:main.1,p:78709,tN:Thread-2] Loaded job runner 'galaxy.jobs.runners.local:LocalJobRunner' as 'local' galaxy.jobs.handler DEBUG 2024-02-23 14:21:41,509 [pN:main.1,p:78709,tN:Thread-2] Loaded job runners plugins: local galaxy.jobs.runners DEBUG 2024-02-23 14:21:41,510 [pN:main.1,p:78709,tN:Thread-2] Starting 4 LocalRunner workers galaxy.jobs.handler DEBUG 2024-02-23 14:21:41,514 [pN:main.1,p:78709,tN:Thread-2] Handler queue starting for jobs assigned to handler: main.1 galaxy.jobs.handler INFO 2024-02-23 14:21:41,546 [pN:main.1,p:78709,tN:JobHandlerQueue.monitor_thread] Handler job grabber initialized with 'HANDLER_ASSIGNMENT_METHODS.DB_SKIP_LOCKED' assignment method for handler 'main.1', tag(s): galaxy.jobs.handler INFO 2024-02-23 14:21:41,546 [pN:main.1,p:78709,tN:Thread-2] job handler queue started galaxy.jobs.handler INFO 2024-02-23 14:21:41,553 [pN:main.1,p:78709,tN:Thread-2] job handler stop queue started galaxy.jobs.handler INFO 2024-02-23 14:21:41,556 [pN:main.1,p:78709,tN:WorkflowRequestMonitor.monitor_thread] Handler job grabber initialized with 'HANDLER_ASSIGNMENT_METHODS.DB_SKIP_LOCKED' assignment method for handler 'main.1', tag(s): None, _default_ galaxy.queue_worker INFO 2024-02-23 14:21:41,575 [pN:main.1,p:78709,tN:Thread-2] Binding and starting galaxy control worker for main.1 galaxy.queue_worker DEBUG 2024-02-23 14:21:41,587 [pN:main.1,p:78709,tN:Thread-2] Executing toolbox reload on 'main.1' galaxy.util WARNING 2024-02-23 14:21:41,644 [pN:main.1,p:78709,tN:Thread-2] directory not found: /scratch/rico/galaxy/lib/galaxy/util/../../../config/plugins/activities [2024-02-23 14:21:41 -0500] [78709] [INFO] Started server process [78709] [2024-02-23 14:21:41 -0500] [78709] [INFO] Waiting for application startup. [2024-02-23 14:21:41 -0500] [78709] [INFO] Application startup complete. galaxy.tools WARNING 2024-02-23 14:21:41,668 [pN:main.1,p:78709,tN:Thread-2] The default shed tool config file (/tmp/tmpqrlh6ih1/shed_tool_conf.xml) has been added to the tool_config_file option, if this is not the desired behavior, please set shed_tool_config_file to your primary shed-enabled tool config file galaxy.tool_util.toolbox.base INFO 2024-02-23 14:21:41,668 [pN:main.1,p:78709,tN:Thread-2] Parsing the tool configuration /tmp/tmpqrlh6ih1/tool_conf.xml galaxy.tool_util.toolbox.base DEBUG 2024-02-23 14:21:41,669 [pN:main.1,p:78709,tN:Thread-2] Tool path for tool configuration /tmp/tmpqrlh6ih1/tool_conf.xml is None galaxy.tools WARNING 2024-02-23 14:21:41,670 [pN:main.1,p:78709,tN:Thread-2] The default shed tool config file (/tmp/tmpqrlh6ih1/shed_tool_conf.xml) has been added to the tool_config_file option, if this is not the desired behavior, please set shed_tool_config_file to your primary shed-enabled tool config file galaxy.tool_util.toolbox.base INFO 2024-02-23 14:21:41,670 [pN:main.1,p:78709,tN:Thread-2] Parsing the tool configuration /tmp/tmpqrlh6ih1/shed_tools_conf.xml galaxy.model.database_heartbeat DEBUG 2024-02-23 14:21:41,678 [pN:main.1,p:78709,tN:database_heartbeart_main.1.thread] main.1 is config watcher galaxy.tool_util.toolbox.base DEBUG 2024-02-23 14:21:41,679 [pN:main.1,p:78709,tN:Thread-2] Tool path for shed tool configuration /tmp/tmpqrlh6ih1/shed_tools_conf.xml is /tmp/tmpqrlh6ih1/shed_tools galaxy.tools WARNING 2024-02-23 14:21:41,680 [pN:main.1,p:78709,tN:Thread-2] The default shed tool config file (/tmp/tmpqrlh6ih1/shed_tool_conf.xml) has been added to the tool_config_file option, if this is not the desired behavior, please set shed_tool_config_file to your primary shed-enabled tool config file galaxy.tool_util.toolbox.base INFO 2024-02-23 14:21:41,680 [pN:main.1,p:78709,tN:Thread-2] Parsing the tool configuration /tmp/tmpqrlh6ih1/empty_tool_conf.xml galaxy.tool_util.toolbox.base DEBUG 2024-02-23 14:21:41,683 [pN:main.1,p:78709,tN:Thread-2] Tool path for tool configuration /tmp/tmpqrlh6ih1/empty_tool_conf.xml is None galaxy.tool_util.toolbox.base DEBUG 2024-02-23 14:21:41,684 [pN:main.1,p:78709,tN:Thread-2] Reading tools from config files finished (15.967 ms) galaxy.tool_util.toolbox.base DEBUG 2024-02-23 14:21:41,684 [pN:main.1,p:78709,tN:Thread-2] Loaded tool id: upload1, version: 1.1.7 into tool panel.. galaxy.tool_util.toolbox.base DEBUG 2024-02-23 14:21:41,684 [pN:main.1,p:78709,tN:Thread-2] Loading tool panel finished (0.472 ms) galaxy.tool_util.toolbox.base DEBUG 2024-02-23 14:21:41,689 [pN:main.1,p:78709,tN:Thread-2] Loaded tool id: upload1, version: 1.1.7 into tool panel.. galaxy.tool_util.toolbox.views.edam DEBUG 2024-02-23 14:21:41,690 [pN:main.1,p:78709,tN:Thread-2] Loading EDAM tool panel finished (5.481 ms) galaxy.tool_util.toolbox.base DEBUG 2024-02-23 14:21:41,692 [pN:main.1,p:78709,tN:Thread-2] Loaded tool id: upload1, version: 1.1.7 into tool panel.. galaxy.tool_util.toolbox.views.edam DEBUG 2024-02-23 14:21:41,692 [pN:main.1,p:78709,tN:Thread-2] Loading EDAM tool panel finished (1.670 ms) galaxy.datatypes.registry DEBUG 2024-02-23 14:21:41,692 [pN:main.1,p:78709,tN:Thread-2] Loaded converter: CONVERTER_uncompressed_to_gz galaxy.datatypes.registry DEBUG 2024-02-23 14:21:41,692 [pN:main.1,p:78709,tN:Thread-2] Loaded converter: CONVERTER_gz_to_uncompressed galaxy.datatypes.registry DEBUG 2024-02-23 14:21:41,693 [pN:main.1,p:78709,tN:Thread-2] Loaded converter: CONVERTER_uncompressed_to_gz galaxy.datatypes.registry DEBUG 2024-02-23 14:21:41,693 [pN:main.1,p:78709,tN:Thread-2] Loaded converter: CONVERTER_gz_to_uncompressed galaxy.datatypes.registry DEBUG 2024-02-23 14:21:41,693 [pN:main.1,p:78709,tN:Thread-2] Loaded converter: CONVERTER_uncompressed_to_gz galaxy.datatypes.registry DEBUG 2024-02-23 14:21:41,693 [pN:main.1,p:78709,tN:Thread-2] Loaded converter: CONVERTER_gz_to_uncompressed galaxy.datatypes.registry DEBUG 2024-02-23 14:21:41,693 [pN:main.1,p:78709,tN:Thread-2] Loaded converter: CONVERTER_Bam_Bai_0 galaxy.datatypes.registry DEBUG 2024-02-23 14:21:41,693 [pN:main.1,p:78709,tN:Thread-2] Loaded converter: CONVERTER_bam_to_bigwig_0 galaxy.datatypes.registry DEBUG 2024-02-23 14:21:41,693 [pN:main.1,p:78709,tN:Thread-2] Loaded converter: CONVERTER_bam_to_qname_sorted_bam galaxy.datatypes.registry DEBUG 2024-02-23 14:21:41,694 [pN:main.1,p:78709,tN:Thread-2] Loaded converter: CONVERTER_bam_to_bigwig_0 galaxy.datatypes.registry DEBUG 2024-02-23 14:21:41,694 [pN:main.1,p:78709,tN:Thread-2] Loaded converter: CONVERTER_bam_to_coodinate_sorted_bam galaxy.datatypes.registry DEBUG 2024-02-23 14:21:41,694 [pN:main.1,p:78709,tN:Thread-2] Loaded converter: CONVERTER_bam_to_qname_sorted_bam galaxy.datatypes.registry DEBUG 2024-02-23 14:21:41,694 [pN:main.1,p:78709,tN:Thread-2] Loaded converter: CONVERTER_cram_to_bam_0 galaxy.datatypes.registry DEBUG 2024-02-23 14:21:41,695 [pN:main.1,p:78709,tN:Thread-2] Loaded converter: CONVERTER_bed_to_gff_0 galaxy.datatypes.registry DEBUG 2024-02-23 14:21:41,695 [pN:main.1,p:78709,tN:Thread-2] Loaded converter: CONVERTER_interval_to_bgzip_0 galaxy.datatypes.registry DEBUG 2024-02-23 14:21:41,695 [pN:main.1,p:78709,tN:Thread-2] Loaded converter: CONVERTER_interval_to_tabix_0 galaxy.datatypes.registry DEBUG 2024-02-23 14:21:41,695 [pN:main.1,p:78709,tN:Thread-2] Loaded converter: CONVERTER_bed_gff_or_vcf_to_bigwig_0 galaxy.datatypes.registry DEBUG 2024-02-23 14:21:41,695 [pN:main.1,p:78709,tN:Thread-2] Loaded converter: CONVERTER_bed_to_fli_0 galaxy.datatypes.registry DEBUG 2024-02-23 14:21:41,696 [pN:main.1,p:78709,tN:Thread-2] Loaded converter: CONVERTER_bedgraph_to_bigwig galaxy.datatypes.registry DEBUG 2024-02-23 14:21:41,696 [pN:main.1,p:78709,tN:Thread-2] Loaded converter: CONVERTER_len_to_linecount galaxy.datatypes.registry DEBUG 2024-02-23 14:21:41,696 [pN:main.1,p:78709,tN:Thread-2] Loaded converter: CONVERTER_parquet_to_csv galaxy.datatypes.registry DEBUG 2024-02-23 14:21:41,696 [pN:main.1,p:78709,tN:Thread-2] Loaded converter: bigwigtowig galaxy.datatypes.registry DEBUG 2024-02-23 14:21:41,696 [pN:main.1,p:78709,tN:Thread-2] Loaded converter: CONVERTER_interval_to_bgzip_0 galaxy.datatypes.registry DEBUG 2024-02-23 14:21:41,696 [pN:main.1,p:78709,tN:Thread-2] Loaded converter: CONVERTER_interval_to_tabix_0 galaxy.datatypes.registry DEBUG 2024-02-23 14:21:41,706 [pN:main.1,p:78709,tN:Thread-2] Loaded converter: CONVERTER_bed_gff_or_vcf_to_bigwig_0 galaxy.datatypes.registry DEBUG 2024-02-23 14:21:41,706 [pN:main.1,p:78709,tN:Thread-2] Loaded converter: csv_to_tabular galaxy.datatypes.registry DEBUG 2024-02-23 14:21:41,707 [pN:main.1,p:78709,tN:Thread-2] Loaded converter: tabular_to_csv galaxy.datatypes.registry DEBUG 2024-02-23 14:21:41,707 [pN:main.1,p:78709,tN:Thread-2] Loaded converter: CONVERTER_fasta_to_tabular galaxy.datatypes.registry DEBUG 2024-02-23 14:21:41,707 [pN:main.1,p:78709,tN:Thread-2] Loaded converter: CONVERTER_fasta_to_bowtie_base_index galaxy.datatypes.registry DEBUG 2024-02-23 14:21:41,707 [pN:main.1,p:78709,tN:Thread-2] Loaded converter: CONVERTER_fasta_to_bowtie_color_index galaxy.datatypes.registry DEBUG 2024-02-23 14:21:41,707 [pN:main.1,p:78709,tN:Thread-2] Loaded converter: CONVERTER_fasta_to_2bit galaxy.datatypes.registry DEBUG 2024-02-23 14:21:41,707 [pN:main.1,p:78709,tN:Thread-2] Loaded converter: CONVERTER_fasta_to_len galaxy.datatypes.registry DEBUG 2024-02-23 14:21:41,707 [pN:main.1,p:78709,tN:Thread-2] Loaded converter: CONVERTER_fasta_to_fai galaxy.datatypes.registry DEBUG 2024-02-23 14:21:41,708 [pN:main.1,p:78709,tN:Thread-2] Loaded converter: CONVERTER_uncompressed_to_gz galaxy.datatypes.registry DEBUG 2024-02-23 14:21:41,708 [pN:main.1,p:78709,tN:Thread-2] Loaded converter: CONVERTER_gz_to_uncompressed galaxy.datatypes.registry DEBUG 2024-02-23 14:21:41,708 [pN:main.1,p:78709,tN:Thread-2] Loaded converter: CONVERTER_fastq_to_fqtoc0 galaxy.datatypes.registry DEBUG 2024-02-23 14:21:41,708 [pN:main.1,p:78709,tN:Thread-2] Loaded converter: CONVERTER_uncompressed_to_gz galaxy.datatypes.registry DEBUG 2024-02-23 14:21:41,708 [pN:main.1,p:78709,tN:Thread-2] Loaded converter: CONVERTER_gz_to_uncompressed galaxy.datatypes.registry DEBUG 2024-02-23 14:21:41,708 [pN:main.1,p:78709,tN:Thread-2] Loaded converter: CONVERTER_bz2_to_uncompressed galaxy.datatypes.registry DEBUG 2024-02-23 14:21:41,709 [pN:main.1,p:78709,tN:Thread-2] Loaded converter: CONVERTER_fastq_to_fqtoc0 galaxy.datatypes.registry DEBUG 2024-02-23 14:21:41,709 [pN:main.1,p:78709,tN:Thread-2] Loaded converter: CONVERTER_uncompressed_to_gz galaxy.datatypes.registry DEBUG 2024-02-23 14:21:41,709 [pN:main.1,p:78709,tN:Thread-2] Loaded converter: CONVERTER_gz_to_uncompressed galaxy.datatypes.registry DEBUG 2024-02-23 14:21:41,709 [pN:main.1,p:78709,tN:Thread-2] Loaded converter: CONVERTER_bz2_to_uncompressed galaxy.datatypes.registry DEBUG 2024-02-23 14:21:41,709 [pN:main.1,p:78709,tN:Thread-2] Loaded converter: CONVERTER_fastq_to_fqtoc0 galaxy.datatypes.registry DEBUG 2024-02-23 14:21:41,709 [pN:main.1,p:78709,tN:Thread-2] Loaded converter: CONVERTER_uncompressed_to_gz galaxy.datatypes.registry DEBUG 2024-02-23 14:21:41,709 [pN:main.1,p:78709,tN:Thread-2] Loaded converter: CONVERTER_gz_to_uncompressed galaxy.datatypes.registry DEBUG 2024-02-23 14:21:41,710 [pN:main.1,p:78709,tN:Thread-2] Loaded converter: CONVERTER_bz2_to_uncompressed galaxy.datatypes.registry DEBUG 2024-02-23 14:21:41,710 [pN:main.1,p:78709,tN:Thread-2] Loaded converter: CONVERTER_fastq_to_fqtoc0 galaxy.datatypes.registry DEBUG 2024-02-23 14:21:41,710 [pN:main.1,p:78709,tN:Thread-2] Loaded converter: CONVERTER_uncompressed_to_gz galaxy.datatypes.registry DEBUG 2024-02-23 14:21:41,710 [pN:main.1,p:78709,tN:Thread-2] Loaded converter: CONVERTER_gz_to_uncompressed galaxy.datatypes.registry DEBUG 2024-02-23 14:21:41,710 [pN:main.1,p:78709,tN:Thread-2] Loaded converter: CONVERTER_bz2_to_uncompressed galaxy.datatypes.registry DEBUG 2024-02-23 14:21:41,710 [pN:main.1,p:78709,tN:Thread-2] Loaded converter: CONVERTER_fastq_to_fqtoc0 galaxy.datatypes.registry DEBUG 2024-02-23 14:21:41,710 [pN:main.1,p:78709,tN:Thread-2] Loaded converter: CONVERTER_uncompressed_to_gz galaxy.datatypes.registry DEBUG 2024-02-23 14:21:41,710 [pN:main.1,p:78709,tN:Thread-2] Loaded converter: CONVERTER_gz_to_uncompressed galaxy.datatypes.registry DEBUG 2024-02-23 14:21:41,711 [pN:main.1,p:78709,tN:Thread-2] Loaded converter: CONVERTER_bz2_to_uncompressed galaxy.datatypes.registry DEBUG 2024-02-23 14:21:41,711 [pN:main.1,p:78709,tN:Thread-2] Loaded converter: CONVERTER_gff_to_bed_0 galaxy.datatypes.registry DEBUG 2024-02-23 14:21:41,711 [pN:main.1,p:78709,tN:Thread-2] Loaded converter: CONVERTER_gff_to_interval_index_0 galaxy.datatypes.registry DEBUG 2024-02-23 14:21:41,711 [pN:main.1,p:78709,tN:Thread-2] Loaded converter: CONVERTER_bed_gff_or_vcf_to_bigwig_0 galaxy.datatypes.registry DEBUG 2024-02-23 14:21:41,711 [pN:main.1,p:78709,tN:Thread-2] Loaded converter: CONVERTER_gff_to_fli_0 galaxy.datatypes.registry DEBUG 2024-02-23 14:21:41,712 [pN:main.1,p:78709,tN:Thread-2] Loaded converter: CONVERTER_interval_to_bgzip_0 galaxy.datatypes.registry DEBUG 2024-02-23 14:21:41,712 [pN:main.1,p:78709,tN:Thread-2] Loaded converter: CONVERTER_interval_to_tabix_0 galaxy.datatypes.registry DEBUG 2024-02-23 14:21:41,712 [pN:main.1,p:78709,tN:Thread-2] Loaded converter: CONVERTER_uncompressed_to_gz galaxy.datatypes.registry DEBUG 2024-02-23 14:21:41,712 [pN:main.1,p:78709,tN:Thread-2] Loaded converter: CONVERTER_gz_to_uncompressed galaxy.datatypes.registry DEBUG 2024-02-23 14:21:41,712 [pN:main.1,p:78709,tN:Thread-2] Loaded converter: CONVERTER_bz2_to_uncompressed galaxy.datatypes.registry DEBUG 2024-02-23 14:21:41,712 [pN:main.1,p:78709,tN:Thread-2] Loaded converter: CONVERTER_gff_to_interval_index_0 galaxy.datatypes.registry DEBUG 2024-02-23 14:21:41,713 [pN:main.1,p:78709,tN:Thread-2] Loaded converter: CONVERTER_bed_gff_or_vcf_to_bigwig_0 galaxy.datatypes.registry DEBUG 2024-02-23 14:21:41,713 [pN:main.1,p:78709,tN:Thread-2] Loaded converter: CONVERTER_interval_to_bed_0 galaxy.datatypes.registry DEBUG 2024-02-23 14:21:41,713 [pN:main.1,p:78709,tN:Thread-2] Loaded converter: CONVERTER_interval_to_bedstrict_0 galaxy.datatypes.registry DEBUG 2024-02-23 14:21:41,713 [pN:main.1,p:78709,tN:Thread-2] Loaded converter: CONVERTER_interval_to_bed6_0 galaxy.datatypes.registry DEBUG 2024-02-23 14:21:41,713 [pN:main.1,p:78709,tN:Thread-2] Loaded converter: CONVERTER_interval_to_bed12_0 galaxy.datatypes.registry DEBUG 2024-02-23 14:21:41,713 [pN:main.1,p:78709,tN:Thread-2] Loaded converter: CONVERTER_interval_to_bgzip_0 galaxy.datatypes.registry DEBUG 2024-02-23 14:21:41,713 [pN:main.1,p:78709,tN:Thread-2] Loaded converter: CONVERTER_interval_to_tabix_0 galaxy.datatypes.registry DEBUG 2024-02-23 14:21:41,713 [pN:main.1,p:78709,tN:Thread-2] Loaded converter: CONVERTER_interval_to_bigwig_0 galaxy.datatypes.registry DEBUG 2024-02-23 14:21:41,714 [pN:main.1,p:78709,tN:Thread-2] Loaded converter: CONVERTER_picard_interval_list_to_bed6 galaxy.datatypes.registry DEBUG 2024-02-23 14:21:41,714 [pN:main.1,p:78709,tN:Thread-2] Loaded converter: CONVERTER_tar_to_directory galaxy.datatypes.registry DEBUG 2024-02-23 14:21:41,714 [pN:main.1,p:78709,tN:Thread-2] Loaded converter: CONVERTER_uncompressed_to_gz galaxy.datatypes.registry DEBUG 2024-02-23 14:21:41,714 [pN:main.1,p:78709,tN:Thread-2] Loaded converter: CONVERTER_gz_to_uncompressed galaxy.datatypes.registry DEBUG 2024-02-23 14:21:41,714 [pN:main.1,p:78709,tN:Thread-2] Loaded converter: CONVERTER_uncompressed_to_gz galaxy.datatypes.registry DEBUG 2024-02-23 14:21:41,714 [pN:main.1,p:78709,tN:Thread-2] Loaded converter: CONVERTER_gz_to_uncompressed galaxy.datatypes.registry DEBUG 2024-02-23 14:21:41,714 [pN:main.1,p:78709,tN:Thread-2] Loaded converter: CONVERTER_uncompressed_to_gz galaxy.datatypes.registry DEBUG 2024-02-23 14:21:41,714 [pN:main.1,p:78709,tN:Thread-2] Loaded converter: CONVERTER_gz_to_uncompressed galaxy.datatypes.registry DEBUG 2024-02-23 14:21:41,715 [pN:main.1,p:78709,tN:Thread-2] Loaded converter: CONVERTER_maf_to_fasta_0 galaxy.datatypes.registry DEBUG 2024-02-23 14:21:41,715 [pN:main.1,p:78709,tN:Thread-2] Loaded converter: CONVERTER_maf_to_interval_0 galaxy.datatypes.registry DEBUG 2024-02-23 14:21:41,715 [pN:main.1,p:78709,tN:Thread-2] Loaded converter: CONVERTER_interval_to_tabix_0 galaxy.datatypes.registry DEBUG 2024-02-23 14:21:41,715 [pN:main.1,p:78709,tN:Thread-2] Loaded converter: CONVERTER_interval_to_bgzip_0 galaxy.datatypes.registry DEBUG 2024-02-23 14:21:41,715 [pN:main.1,p:78709,tN:Thread-2] Loaded converter: CONVERTER_bed_gff_or_vcf_to_bigwig_0 galaxy.datatypes.registry DEBUG 2024-02-23 14:21:41,716 [pN:main.1,p:78709,tN:Thread-2] Loaded converter: CONVERTER_interval_to_bgzip_0 galaxy.datatypes.registry DEBUG 2024-02-23 14:21:41,716 [pN:main.1,p:78709,tN:Thread-2] Loaded converter: CONVERTER_interval_to_tabix_0 galaxy.datatypes.registry DEBUG 2024-02-23 14:21:41,716 [pN:main.1,p:78709,tN:Thread-2] Loaded converter: CONVERTER_sam_to_unsorted_bam galaxy.datatypes.registry DEBUG 2024-02-23 14:21:41,716 [pN:main.1,p:78709,tN:Thread-2] Loaded converter: CONVERTER_bam_to_coodinate_sorted_bam galaxy.datatypes.registry DEBUG 2024-02-23 14:21:41,716 [pN:main.1,p:78709,tN:Thread-2] Loaded converter: CONVERTER_bam_to_qname_sorted_bam galaxy.datatypes.registry DEBUG 2024-02-23 14:21:41,716 [pN:main.1,p:78709,tN:Thread-2] Loaded converter: CONVERTER_sam_to_bigwig_0 galaxy.datatypes.registry DEBUG 2024-02-23 14:21:41,717 [pN:main.1,p:78709,tN:Thread-2] Loaded converter: tabular_to_dbnsfp galaxy.datatypes.registry DEBUG 2024-02-23 14:21:41,717 [pN:main.1,p:78709,tN:Thread-2] Loaded converter: tabular_to_csv galaxy.datatypes.registry DEBUG 2024-02-23 14:21:41,717 [pN:main.1,p:78709,tN:Thread-2] Loaded converter: CONVERTER_uncompressed_to_gz galaxy.datatypes.registry DEBUG 2024-02-23 14:21:41,717 [pN:main.1,p:78709,tN:Thread-2] Loaded converter: CONVERTER_gz_to_uncompressed galaxy.datatypes.registry DEBUG 2024-02-23 14:21:41,717 [pN:main.1,p:78709,tN:Thread-2] Loaded converter: CONVERTER_interval_to_bgzip_0 galaxy.datatypes.registry DEBUG 2024-02-23 14:21:41,717 [pN:main.1,p:78709,tN:Thread-2] Loaded converter: CONVERTER_vcf_to_vcf_bgzip_0 galaxy.datatypes.registry DEBUG 2024-02-23 14:21:41,718 [pN:main.1,p:78709,tN:Thread-2] Loaded converter: CONVERTER_interval_to_tabix_0 galaxy.datatypes.registry DEBUG 2024-02-23 14:21:41,718 [pN:main.1,p:78709,tN:Thread-2] Loaded converter: CONVERTER_bed_gff_or_vcf_to_bigwig_0 galaxy.datatypes.registry DEBUG 2024-02-23 14:21:41,718 [pN:main.1,p:78709,tN:Thread-2] Loaded converter: CONVERTER_uncompressed_to_gz galaxy.datatypes.registry DEBUG 2024-02-23 14:21:41,718 [pN:main.1,p:78709,tN:Thread-2] Loaded converter: CONVERTER_bcf_uncompressed_to_bcf galaxy.datatypes.registry DEBUG 2024-02-23 14:21:41,718 [pN:main.1,p:78709,tN:Thread-2] Loaded converter: CONVERTER_bcf_uncompressed_to_bcf galaxy.datatypes.registry DEBUG 2024-02-23 14:21:41,718 [pN:main.1,p:78709,tN:Thread-2] Loaded converter: CONVERTER_wig_to_bigwig galaxy.datatypes.registry DEBUG 2024-02-23 14:21:41,718 [pN:main.1,p:78709,tN:Thread-2] Loaded converter: CONVERTER_wiggle_to_interval_0 galaxy.datatypes.registry DEBUG 2024-02-23 14:21:41,718 [pN:main.1,p:78709,tN:Thread-2] Loaded converter: CONVERTER_vcf_bgzip_to_tabix_0 galaxy.datatypes.registry DEBUG 2024-02-23 14:21:41,719 [pN:main.1,p:78709,tN:Thread-2] Loaded converter: CONVERTER_gz_to_uncompressed galaxy.datatypes.registry DEBUG 2024-02-23 14:21:41,719 [pN:main.1,p:78709,tN:Thread-2] Loaded converter: lped2fpedconvert galaxy.datatypes.registry DEBUG 2024-02-23 14:21:41,719 [pN:main.1,p:78709,tN:Thread-2] Loaded converter: lped2pbedconvert galaxy.datatypes.registry DEBUG 2024-02-23 14:21:41,719 [pN:main.1,p:78709,tN:Thread-2] Loaded converter: pbed2lpedconvert galaxy.datatypes.registry DEBUG 2024-02-23 14:21:41,739 [pN:main.1,p:78709,tN:Thread-2] Loaded converter: pbed2ldindepconvert galaxy.datatypes.registry DEBUG 2024-02-23 14:21:41,739 [pN:main.1,p:78709,tN:Thread-2] Loaded converter: CONVERTER_uncompressed_to_gz galaxy.datatypes.registry DEBUG 2024-02-23 14:21:41,739 [pN:main.1,p:78709,tN:Thread-2] Loaded converter: CONVERTER_gz_to_uncompressed galaxy.datatypes.registry DEBUG 2024-02-23 14:21:41,739 [pN:main.1,p:78709,tN:Thread-2] Loaded converter: CONVERTER_biom galaxy.datatypes.registry DEBUG 2024-02-23 14:21:41,740 [pN:main.1,p:78709,tN:Thread-2] Loaded converter: CONVERTER_biom galaxy.datatypes.registry DEBUG 2024-02-23 14:21:41,740 [pN:main.1,p:78709,tN:Thread-2] Loaded converter: CONVERTER_molecules galaxy.datatypes.registry DEBUG 2024-02-23 14:21:41,740 [pN:main.1,p:78709,tN:Thread-2] Loaded converter: CONVERTER_molecules galaxy.datatypes.registry DEBUG 2024-02-23 14:21:41,740 [pN:main.1,p:78709,tN:Thread-2] Loaded converter: CONVERTER_molecules galaxy.datatypes.registry DEBUG 2024-02-23 14:21:41,740 [pN:main.1,p:78709,tN:Thread-2] Loaded converter: CONVERTER_SMILES_to_MOL galaxy.datatypes.registry DEBUG 2024-02-23 14:21:41,740 [pN:main.1,p:78709,tN:Thread-2] Loaded converter: CONVERTER_molecules galaxy.datatypes.registry DEBUG 2024-02-23 14:21:41,741 [pN:main.1,p:78709,tN:Thread-2] Loaded converter: CONVERTER_smiles_to_smiles galaxy.datatypes.registry DEBUG 2024-02-23 14:21:41,741 [pN:main.1,p:78709,tN:Thread-2] Loaded converter: CONVERTER_molecules galaxy.datatypes.registry DEBUG 2024-02-23 14:21:41,741 [pN:main.1,p:78709,tN:Thread-2] Loaded converter: CONVERTER_molecules galaxy.datatypes.registry DEBUG 2024-02-23 14:21:41,741 [pN:main.1,p:78709,tN:Thread-2] Loaded converter: CONVERTER_molecules galaxy.datatypes.registry DEBUG 2024-02-23 14:21:41,741 [pN:main.1,p:78709,tN:Thread-2] Loaded converter: CONVERTER_molecules galaxy.datatypes.registry DEBUG 2024-02-23 14:21:41,742 [pN:main.1,p:78709,tN:Thread-2] Loaded converter: CONVERTER_molecules galaxy.datatypes.registry DEBUG 2024-02-23 14:21:41,742 [pN:main.1,p:78709,tN:Thread-2] Loaded converter: CONVERTER_molecules galaxy.datatypes.registry DEBUG 2024-02-23 14:21:41,742 [pN:main.1,p:78709,tN:Thread-2] Loaded converter: CONVERTER_inchi_to_mol galaxy.datatypes.registry DEBUG 2024-02-23 14:21:41,742 [pN:main.1,p:78709,tN:Thread-2] Loaded converter: CONVERTER_molecules galaxy.datatypes.registry DEBUG 2024-02-23 14:21:41,742 [pN:main.1,p:78709,tN:Thread-2] Loaded converter: CONVERTER_molecules galaxy.datatypes.registry DEBUG 2024-02-23 14:21:41,742 [pN:main.1,p:78709,tN:Thread-2] Loaded converter: CONVERTER_molecules galaxy.datatypes.registry DEBUG 2024-02-23 14:21:41,743 [pN:main.1,p:78709,tN:Thread-2] Loaded converter: CONVERTER_molecules galaxy.datatypes.registry DEBUG 2024-02-23 14:21:41,743 [pN:main.1,p:78709,tN:Thread-2] Loaded converter: CONVERTER_molecules galaxy.datatypes.registry DEBUG 2024-02-23 14:21:41,743 [pN:main.1,p:78709,tN:Thread-2] Loaded converter: CONVERTER_molecules galaxy.datatypes.registry DEBUG 2024-02-23 14:21:41,743 [pN:main.1,p:78709,tN:Thread-2] Loaded converter: CONVERTER_molecules galaxy.datatypes.registry DEBUG 2024-02-23 14:21:41,743 [pN:main.1,p:78709,tN:Thread-2] Loaded converter: CONVERTER_molecules galaxy.datatypes.registry DEBUG 2024-02-23 14:21:41,743 [pN:main.1,p:78709,tN:Thread-2] Loaded converter: CONVERTER_molecules galaxy.datatypes.registry DEBUG 2024-02-23 14:21:41,744 [pN:main.1,p:78709,tN:Thread-2] Loaded converter: CONVERTER_molecules galaxy.datatypes.registry DEBUG 2024-02-23 14:21:41,744 [pN:main.1,p:78709,tN:Thread-2] Loaded converter: CONVERTER_mol2_to_mol galaxy.datatypes.registry DEBUG 2024-02-23 14:21:41,744 [pN:main.1,p:78709,tN:Thread-2] Loaded converter: CONVERTER_molecules galaxy.datatypes.registry DEBUG 2024-02-23 14:21:41,744 [pN:main.1,p:78709,tN:Thread-2] Loaded converter: CONVERTER_cml_to_smiles galaxy.datatypes.registry DEBUG 2024-02-23 14:21:41,744 [pN:main.1,p:78709,tN:Thread-2] Loaded converter: CONVERTER_molecules galaxy.datatypes.registry DEBUG 2024-02-23 14:21:41,744 [pN:main.1,p:78709,tN:Thread-2] Loaded converter: CONVERTER_molecules galaxy.datatypes.registry DEBUG 2024-02-23 14:21:41,745 [pN:main.1,p:78709,tN:Thread-2] Loaded converter: CONVERTER_molecules galaxy.datatypes.registry DEBUG 2024-02-23 14:21:41,745 [pN:main.1,p:78709,tN:Thread-2] Loaded converter: CONVERTER_Pdb_to_Gro_0 galaxy.datatypes.registry DEBUG 2024-02-23 14:21:41,745 [pN:main.1,p:78709,tN:Thread-2] Loaded converter: CONVERTER_mdconvert galaxy.datatypes.registry DEBUG 2024-02-23 14:21:41,745 [pN:main.1,p:78709,tN:Thread-2] Loaded converter: CONVERTER_mdconvert galaxy.datatypes.registry DEBUG 2024-02-23 14:21:41,745 [pN:main.1,p:78709,tN:Thread-2] Loaded converter: CONVERTER_mdconvert galaxy.datatypes.registry DEBUG 2024-02-23 14:21:41,745 [pN:main.1,p:78709,tN:Thread-2] Loaded converter: CONVERTER_mdconvert galaxy.datatypes.registry DEBUG 2024-02-23 14:21:41,746 [pN:main.1,p:78709,tN:Thread-2] Loaded converter: CONVERTER_mdconvert galaxy.datatypes.registry DEBUG 2024-02-23 14:21:41,746 [pN:main.1,p:78709,tN:Thread-2] Loaded converter: CONVERTER_mdconvert galaxy.datatypes.registry DEBUG 2024-02-23 14:21:41,746 [pN:main.1,p:78709,tN:Thread-2] Loaded converter: CONVERTER_Gro_to_Pdb_0 galaxy.datatypes.registry DEBUG 2024-02-23 14:21:41,746 [pN:main.1,p:78709,tN:Thread-2] Loaded converter: CONVERTER_ref_to_seq_taxomony galaxy.datatypes.registry DEBUG 2024-02-23 14:21:41,746 [pN:main.1,p:78709,tN:Thread-2] Loaded converter: CONVERTER_neostorezip_to_neostore galaxy.datatypes.registry DEBUG 2024-02-23 14:21:41,751 [pN:main.1,p:78709,tN:Thread-2] Loaded external metadata tool: __SET_METADATA__ galaxy.tools.special_tools DEBUG 2024-02-23 14:21:41,753 [pN:main.1,p:78709,tN:Thread-2] Loaded history export tool: __EXPORT_HISTORY__ galaxy.tools.special_tools DEBUG 2024-02-23 14:21:41,755 [pN:main.1,p:78709,tN:Thread-2] Loaded history export to uri tool: __EXPORT_HISTORY_TO_URI__ galaxy.tools.special_tools DEBUG 2024-02-23 14:21:41,757 [pN:main.1,p:78709,tN:Thread-2] Loaded history import tool: __IMPORT_HISTORY__ galaxy.tools.special_tools DEBUG 2024-02-23 14:21:41,761 [pN:main.1,p:78709,tN:Thread-2] Loaded data fetch tool: __DATA_FETCH__ galaxy.queue_worker INFO 2024-02-23 14:21:41,761 [pN:main.1,p:78709,tN:Thread-2] Queuing async task rebuild_toolbox_search_index for main.1. galaxy.queue_worker DEBUG 2024-02-23 14:21:41,781 [pN:main.1,p:78709,tN:Thread-2] Toolbox reload (193.942 ms) galaxy.queue_worker INFO 2024-02-23 14:21:41,781 [pN:main.1,p:78709,tN:Thread-2] Queuing async task rebuild_toolbox_search_index for main.1. galaxy.web_stack INFO 2024-02-23 14:21:41,792 [pN:main.1,p:78709,tN:Thread-2] Galaxy server instance 'main.1' is running [92m Serving on http://127.0.0.1:9090 [0m galaxy.queue_worker INFO 2024-02-23 14:21:42,781 [pN:main.1,p:78709,tN:Thread-1] Instance 'main.1' received 'rebuild_toolbox_search_index' task, executing now. galaxy.tools.search DEBUG 2024-02-23 14:21:42,782 [pN:main.1,p:78709,tN:Thread-1] Starting to build toolbox index of panel default. galaxy.tools.search DEBUG 2024-02-23 14:21:42,791 [pN:main.1,p:78709,tN:Thread-1] Toolbox index of panel default finished (9.312 ms) galaxy.tools.search DEBUG 2024-02-23 14:21:42,791 [pN:main.1,p:78709,tN:Thread-1] Starting to build toolbox index of panel ontology:edam_operations. galaxy.tools.search DEBUG 2024-02-23 14:21:42,795 [pN:main.1,p:78709,tN:Thread-1] Toolbox index of panel ontology:edam_operations finished (3.894 ms) galaxy.tools.search DEBUG 2024-02-23 14:21:42,796 [pN:main.1,p:78709,tN:Thread-1] Starting to build toolbox index of panel ontology:edam_topics. galaxy.tools.search DEBUG 2024-02-23 14:21:42,799 [pN:main.1,p:78709,tN:Thread-1] Toolbox index of panel ontology:edam_topics finished (3.529 ms) galaxy.queue_worker INFO 2024-02-23 14:21:42,808 [pN:main.1,p:78709,tN:Thread-1] Instance 'main.1' received 'rebuild_toolbox_search_index' task, executing now. galaxy.tools.search DEBUG 2024-02-23 14:21:42,808 [pN:main.1,p:78709,tN:Thread-1] Starting to build toolbox index of panel default. galaxy.tools.search DEBUG 2024-02-23 14:21:42,811 [pN:main.1,p:78709,tN:Thread-1] Toolbox index of panel default finished (3.266 ms) galaxy.tools.search DEBUG 2024-02-23 14:21:42,811 [pN:main.1,p:78709,tN:Thread-1] Starting to build toolbox index of panel ontology:edam_operations. galaxy.tools.search DEBUG 2024-02-23 14:21:42,815 [pN:main.1,p:78709,tN:Thread-1] Toolbox index of panel ontology:edam_operations finished (3.321 ms) galaxy.tools.search DEBUG 2024-02-23 14:21:42,815 [pN:main.1,p:78709,tN:Thread-1] Starting to build toolbox index of panel ontology:edam_topics. galaxy.tools.search DEBUG 2024-02-23 14:21:42,818 [pN:main.1,p:78709,tN:Thread-1] Toolbox index of panel ontology:edam_topics finished (3.186 ms) 2024-02-23 14:21:45,822 INFO success: gunicorn entered RUNNING state, process has stayed up for > than 15 seconds (startsecs) ==> /tmp/tmpqrlh6ih1/gravity/log/celery-beat.log <== [2024-02-23 14:26:34,191: DEBUG/MainProcess] beat: Synchronizing schedule... [2024-02-23 14:26:34,192: DEBUG/MainProcess] beat: Waking up in 5.00 minutes. ==> /tmp/tmpqrlh6ih1/gravity/log/gunicorn.log <== galaxy.webapps.base.webapp DEBUG 2024-02-23 14:29:47,081 [pN:main.1,p:78709,tN:WSGI_0] Received invalid session key '{secure_id}', setting a new session key /scratch/rico/galaxy/lib/galaxy/managers/users.py:854: SAWarning: Dialect sqlite+pysqlite does *not* support Decimal objects natively, and SQLAlchemy must convert from floating point - rounding errors and other issues may occur. Please consider storing Decimal numbers as strings or integers on this platform for lossless storage. return session.scalars(stmt).first() /scratch/rico/galaxy/lib/galaxy/webapps/base/webapp.py:349: SAWarning: Dialect sqlite+pysqlite does *not* support Decimal objects natively, and SQLAlchemy must convert from floating point - rounding errors and other issues may occur. Please consider storing Decimal numbers as strings or integers on this platform for lossless storage. if config.use_remote_user and self.galaxy_session.user.deleted: uvicorn.access INFO 2024-02-23 14:29:47,290 [pN:main.1,p:78709,tN:MainThread] 127.0.0.1:51344 - "GET / HTTP/1.1" 200 uvicorn.access INFO 2024-02-23 14:29:47,318 [pN:main.1,p:78709,tN:MainThread] 127.0.0.1:51344 - "GET /static/dist/base.css?v=1707855697000 HTTP/1.1" 200 uvicorn.access INFO 2024-02-23 14:29:47,321 [pN:main.1,p:78709,tN:MainThread] 127.0.0.1:51360 - "GET /static/dist/analysis.bundled.js?v=1707855697000 HTTP/1.1" 200 uvicorn.access INFO 2024-02-23 14:29:47,324 [pN:main.1,p:78709,tN:MainThread] 127.0.0.1:51352 - "GET /static/dist/libs.bundled.js?v=1707855697000 HTTP/1.1" 200 uvicorn.access INFO 2024-02-23 14:29:48,282 [pN:main.1,p:78709,tN:MainThread] 127.0.0.1:51360 - "GET /api/webhooks HTTP/1.1" 200 /scratch/rico/galaxy/lib/galaxy/managers/interactivetool.py:249: SAWarning: Coercing Subquery object into a select() for use in IN(); please pass a select() construct explicitly stmt = select(InteractiveToolEntryPoint).where(InteractiveToolEntryPoint.job_id.in_(build_subquery())) uvicorn.access INFO 2024-02-23 14:29:48,307 [pN:main.1,p:78709,tN:MainThread] 127.0.0.1:51376 - "GET /api/entry_points?running=true HTTP/1.1" 200 uvicorn.access INFO 2024-02-23 14:29:48,325 [pN:main.1,p:78709,tN:MainThread] 127.0.0.1:51344 - "GET /api/configuration HTTP/1.1" 200 uvicorn.access INFO 2024-02-23 14:29:48,341 [pN:main.1,p:78709,tN:MainThread] 127.0.0.1:51352 - "GET /api/users/current HTTP/1.1" 200 uvicorn.access INFO 2024-02-23 14:29:48,385 [pN:main.1,p:78709,tN:MainThread] 127.0.0.1:51344 - "GET /api/webhooks HTTP/1.1" 200 uvicorn.access INFO 2024-02-23 14:29:48,392 [pN:main.1,p:78709,tN:MainThread] 127.0.0.1:51352 - "GET /welcome HTTP/1.1" 302 uvicorn.access INFO 2024-02-23 14:29:48,412 [pN:main.1,p:78709,tN:MainThread] 127.0.0.1:51376 - "GET /api/tool_panels HTTP/1.1" 200 uvicorn.access INFO 2024-02-23 14:29:48,470 [pN:main.1,p:78709,tN:MainThread] 127.0.0.1:51376 - "GET /static/dist/base.css HTTP/1.1" 200 uvicorn.access INFO 2024-02-23 14:29:48,474 [pN:main.1,p:78709,tN:MainThread] 127.0.0.1:51384 - "GET /favicon.ico HTTP/1.1" 404 uvicorn.access INFO 2024-02-23 14:29:48,511 [pN:main.1,p:78709,tN:MainThread] 127.0.0.1:51344 - "GET /api/tools?in_panel=False HTTP/1.1" 200 uvicorn.access INFO 2024-02-23 14:29:48,538 [pN:main.1,p:78709,tN:MainThread] 127.0.0.1:51352 - "GET /api/histories/count HTTP/1.1" 200 /scratch/rico/galaxy/lib/galaxy/model/__init__.py:3318: SAWarning: Dialect sqlite+pysqlite does *not* support Decimal objects natively, and SQLAlchemy must convert from floating point - rounding errors and other issues may occur. Please consider storing Decimal numbers as strings or integers on this platform for lossless storage. return object_session(self).scalar(stmt) or 0 uvicorn.access INFO 2024-02-23 14:29:48,554 [pN:main.1,p:78709,tN:MainThread] 127.0.0.1:51360 - "GET /history/current_history_json HTTP/1.1" 200 uvicorn.access INFO 2024-02-23 14:29:48,580 [pN:main.1,p:78709,tN:MainThread] 127.0.0.1:51352 - "GET /history/current_history_json HTTP/1.1" 200 uvicorn.access INFO 2024-02-23 14:29:48,613 [pN:main.1,p:78709,tN:MainThread] 127.0.0.1:51360 - "GET /api/tool_panels/default HTTP/1.1" 200 /scratch/rico/galaxy/lib/galaxy/managers/history_contents.py:232: SAWarning: Dialect sqlite+pysqlite does *not* support Decimal objects natively, and SQLAlchemy must convert from floating point - rounding errors and other issues may occur. Please consider storing Decimal numbers as strings or integers on this platform for lossless storage. contents_results = self._union_of_contents_query(container, **kwargs).all() uvicorn.access INFO 2024-02-23 14:29:48,687 [pN:main.1,p:78709,tN:MainThread] 127.0.0.1:51352 - "GET /api/histories?view=summary&order=update_time&offset=0&limit=10 HTTP/1.1" 200 uvicorn.access INFO 2024-02-23 14:29:48,690 [pN:main.1,p:78709,tN:MainThread] 127.0.0.1:51344 - "GET /api/histories/e94ef2b25ec88be9/contents?v=dev&limit=1000&q=update_time-ge&qv=2024-02-23T19:29:47.782Z HTTP/1.1" 200 uvicorn.access INFO 2024-02-23 14:29:48,740 [pN:main.1,p:78709,tN:MainThread] 127.0.0.1:51376 - "GET /api/datatypes?extension_only=false HTTP/1.1" 200 uvicorn.access INFO 2024-02-23 14:29:48,800 [pN:main.1,p:78709,tN:MainThread] 127.0.0.1:51352 - "GET /static/dist/libs.bundled.js HTTP/1.1" 200 uvicorn.access INFO 2024-02-23 14:29:48,871 [pN:main.1,p:78709,tN:MainThread] 127.0.0.1:51384 - "GET /api/genomes HTTP/1.1" 200 uvicorn.access INFO 2024-02-23 14:29:48,872 [pN:main.1,p:78709,tN:MainThread] 127.0.0.1:51360 - "GET /api/histories/e94ef2b25ec88be9/contents?v=dev&order=hid&offset=0&limit=100&q=deleted&qv=false&q=visible&qv=true HTTP/1.1" 200 uvicorn.access INFO 2024-02-23 14:29:48,898 [pN:main.1,p:78709,tN:MainThread] 127.0.0.1:51376 - "GET /api/users/e94ef2b25ec88be9 HTTP/1.1" 200 uvicorn.access INFO 2024-02-23 14:29:48,903 [pN:main.1,p:78709,tN:MainThread] 127.0.0.1:51344 - "GET /api/histories/count HTTP/1.1" 200 uvicorn.access INFO 2024-02-23 14:29:51,792 [pN:main.1,p:78709,tN:MainThread] 127.0.0.1:51390 - "GET /history/current_history_json?since=2024-02-23T19:29:48.000464 HTTP/1.1" 200 uvicorn.access INFO 2024-02-23 14:29:54,822 [pN:main.1,p:78709,tN:MainThread] 127.0.0.1:51392 - "GET /history/current_history_json?since=2024-02-23T19:29:48.000464 HTTP/1.1" 200 uvicorn.access INFO 2024-02-23 14:29:57,851 [pN:main.1,p:78709,tN:MainThread] 127.0.0.1:50962 - "GET /history/current_history_json?since=2024-02-23T19:29:48.000464 HTTP/1.1" 200 uvicorn.access INFO 2024-02-23 14:29:58,400 [pN:main.1,p:78709,tN:MainThread] 127.0.0.1:50962 - "GET /api/entry_points?running=true HTTP/1.1" 200 uvicorn.access INFO 2024-02-23 14:30:01,476 [pN:main.1,p:78709,tN:MainThread] 127.0.0.1:50964 - "GET /history/current_history_json?since=2024-02-23T19:29:48.000464 HTTP/1.1" 200 uvicorn.access INFO 2024-02-23 14:30:04,843 [pN:main.1,p:78709,tN:MainThread] 127.0.0.1:50978 - "GET /history/current_history_json?since=2024-02-23T19:29:48.000464 HTTP/1.1" 200 uvicorn.access INFO 2024-02-23 14:30:07,873 [pN:main.1,p:78709,tN:MainThread] 127.0.0.1:36628 - "GET /history/current_history_json?since=2024-02-23T19:29:48.000464 HTTP/1.1" 200 uvicorn.access INFO 2024-02-23 14:30:08,404 [pN:main.1,p:78709,tN:MainThread] 127.0.0.1:36628 - "GET /api/entry_points?running=true HTTP/1.1" 200 uvicorn.access INFO 2024-02-23 14:30:10,903 [pN:main.1,p:78709,tN:MainThread] 127.0.0.1:36636 - "GET /history/current_history_json?since=2024-02-23T19:29:48.000464 HTTP/1.1" 200 uvicorn.access INFO 2024-02-23 14:30:13,934 [pN:main.1,p:78709,tN:MainThread] 127.0.0.1:36652 - "GET /history/current_history_json?since=2024-02-23T19:29:48.000464 HTTP/1.1" 200 uvicorn.access INFO 2024-02-23 14:30:16,966 [pN:main.1,p:78709,tN:MainThread] 127.0.0.1:58278 - "GET /history/current_history_json?since=2024-02-23T19:29:48.000464 HTTP/1.1" 200 uvicorn.access INFO 2024-02-23 14:30:18,407 [pN:main.1,p:78709,tN:MainThread] 127.0.0.1:58278 - "GET /api/entry_points?running=true HTTP/1.1" 200 uvicorn.access INFO 2024-02-23 14:30:19,994 [pN:main.1,p:78709,tN:MainThread] 127.0.0.1:58278 - "GET /history/current_history_json?since=2024-02-23T19:29:48.000464 HTTP/1.1" 200 uvicorn.access INFO 2024-02-23 14:30:23,026 [pN:main.1,p:78709,tN:MainThread] 127.0.0.1:58280 - "GET /history/current_history_json?since=2024-02-23T19:29:48.000464 HTTP/1.1" 200 uvicorn.access INFO 2024-02-23 14:30:26,058 [pN:main.1,p:78709,tN:MainThread] 127.0.0.1:35382 - "GET /history/current_history_json?since=2024-02-23T19:29:48.000464 HTTP/1.1" 200 uvicorn.access INFO 2024-02-23 14:30:28,411 [pN:main.1,p:78709,tN:MainThread] 127.0.0.1:35392 - "GET /api/entry_points?running=true HTTP/1.1" 200 uvicorn.access INFO 2024-02-23 14:30:29,087 [pN:main.1,p:78709,tN:MainThread] 127.0.0.1:35392 - "GET /history/current_history_json?since=2024-02-23T19:29:48.000464 HTTP/1.1" 200 uvicorn.access INFO 2024-02-23 14:30:32,119 [pN:main.1,p:78709,tN:MainThread] 127.0.0.1:35406 - "GET /history/current_history_json?since=2024-02-23T19:29:48.000464 HTTP/1.1" 200 uvicorn.access INFO 2024-02-23 14:30:35,147 [pN:main.1,p:78709,tN:MainThread] 127.0.0.1:35418 - "GET /history/current_history_json?since=2024-02-23T19:29:48.000464 HTTP/1.1" 200 uvicorn.access INFO 2024-02-23 14:30:38,178 [pN:main.1,p:78709,tN:MainThread] 127.0.0.1:50712 - "GET /history/current_history_json?since=2024-02-23T19:29:48.000464 HTTP/1.1" 200 uvicorn.access INFO 2024-02-23 14:30:38,410 [pN:main.1,p:78709,tN:MainThread] 127.0.0.1:50712 - "GET /api/entry_points?running=true HTTP/1.1" 200 uvicorn.access INFO 2024-02-23 14:30:41,207 [pN:main.1,p:78709,tN:MainThread] 127.0.0.1:50722 - "GET /history/current_history_json?since=2024-02-23T19:29:48.000464 HTTP/1.1" 200 uvicorn.access INFO 2024-02-23 14:30:44,239 [pN:main.1,p:78709,tN:MainThread] 127.0.0.1:50732 - "GET /history/current_history_json?since=2024-02-23T19:29:48.000464 HTTP/1.1" 200 uvicorn.access INFO 2024-02-23 14:30:47,270 [pN:main.1,p:78709,tN:MainThread] 127.0.0.1:46500 - "GET /history/current_history_json?since=2024-02-23T19:29:48.000464 HTTP/1.1" 200 uvicorn.access INFO 2024-02-23 14:30:48,415 [pN:main.1,p:78709,tN:MainThread] 127.0.0.1:46500 - "GET /api/entry_points?running=true HTTP/1.1" 200 uvicorn.access INFO 2024-02-23 14:30:50,299 [pN:main.1,p:78709,tN:MainThread] 127.0.0.1:46500 - "GET /history/current_history_json?since=2024-02-23T19:29:48.000464 HTTP/1.1" 200 uvicorn.access INFO 2024-02-23 14:30:53,329 [pN:main.1,p:78709,tN:MainThread] 127.0.0.1:46514 - "GET /history/current_history_json?since=2024-02-23T19:29:48.000464 HTTP/1.1" 200 uvicorn.access INFO 2024-02-23 14:30:56,356 [pN:main.1,p:78709,tN:MainThread] 127.0.0.1:49334 - "GET /history/current_history_json?since=2024-02-23T19:29:48.000464 HTTP/1.1" 200 uvicorn.access INFO 2024-02-23 14:30:57,485 [pN:main.1,p:78709,tN:MainThread] 127.0.0.1:49334 - "POST /api/upload/resumable_upload/ HTTP/1.1" 201 uvicorn.access INFO 2024-02-23 14:30:57,537 [pN:main.1,p:78709,tN:MainThread] 127.0.0.1:49334 - "PATCH /api/upload/resumable_upload/4d30abe413ab43b280d920f7dea4f47e HTTP/1.1" 204 galaxy.tools INFO 2024-02-23 14:30:57,574 [pN:main.1,p:78709,tN:MainThread] Validated and populated state for tool request (1.213 ms) galaxy.tools.actions.upload DEBUG 2024-02-23 14:30:57,582 [pN:main.1,p:78709,tN:MainThread] Persisted uploads (0.058 ms) galaxy.tools.actions.upload DEBUG 2024-02-23 14:30:57,655 [pN:main.1,p:78709,tN:MainThread] Created upload job (5.150 ms) galaxy.tools.execute DEBUG 2024-02-23 14:30:57,655 [pN:main.1,p:78709,tN:MainThread] Tool __DATA_FETCH__ created job None (73.168 ms) galaxy.web_stack.handlers INFO 2024-02-23 14:30:57,676 [pN:main.1,p:78709,tN:MainThread] (Job[id=1,tool_id=__DATA_FETCH__]) Handler '_default_' assigned using 'HANDLER_ASSIGNMENT_METHODS.DB_SKIP_LOCKED' assignment method galaxy.tools.execute DEBUG 2024-02-23 14:30:57,680 [pN:main.1,p:78709,tN:MainThread] Created 1 job(s) for tool __DATA_FETCH__ request (106.727 ms) uvicorn.access INFO 2024-02-23 14:30:57,694 [pN:main.1,p:78709,tN:MainThread] 127.0.0.1:49334 - "POST /api/tools/fetch HTTP/1.1" 200 uvicorn.access INFO 2024-02-23 14:30:58,416 [pN:main.1,p:78709,tN:MainThread] 127.0.0.1:49334 - "GET /api/entry_points?running=true HTTP/1.1" 200 galaxy.jobs.mapper DEBUG 2024-02-23 14:30:58,477 [pN:main.1,p:78709,tN:JobHandlerQueue.monitor_thread] (1) Mapped job to destination id: docker_local galaxy.jobs.handler DEBUG 2024-02-23 14:30:58,492 [pN:main.1,p:78709,tN:JobHandlerQueue.monitor_thread] (1) Dispatching to local runner galaxy.jobs DEBUG 2024-02-23 14:30:58,503 [pN:main.1,p:78709,tN:JobHandlerQueue.monitor_thread] (1) Persisting job destination (destination id: docker_local) galaxy.jobs DEBUG 2024-02-23 14:30:58,530 [pN:main.1,p:78709,tN:JobHandlerQueue.monitor_thread] (1) Working directory for job is: /tmp/tmpqrlh6ih1/job_working_directory/000/1 galaxy.jobs.runners DEBUG 2024-02-23 14:30:58,541 [pN:main.1,p:78709,tN:JobHandlerQueue.monitor_thread] Job [1] queued (48.588 ms) galaxy.jobs.handler INFO 2024-02-23 14:30:58,552 [pN:main.1,p:78709,tN:JobHandlerQueue.monitor_thread] (1) Job dispatched galaxy.jobs DEBUG 2024-02-23 14:30:58,674 [pN:main.1,p:78709,tN:LocalRunner.work_thread-3] Job wrapper for Job [1] prepared (102.072 ms) galaxy.tool_util.deps.containers INFO 2024-02-23 14:30:58,675 [pN:main.1,p:78709,tN:LocalRunner.work_thread-3] Checking with container resolver [ExplicitContainerResolver[]] found description [None] galaxy.tool_util.deps.containers INFO 2024-02-23 14:30:58,675 [pN:main.1,p:78709,tN:LocalRunner.work_thread-3] Checking with container resolver [CachedMulledDockerContainerResolver[namespace=biocontainers]] found description [None] galaxy.tool_util.deps.containers INFO 2024-02-23 14:30:58,675 [pN:main.1,p:78709,tN:LocalRunner.work_thread-3] Checking with container resolver [CachedMulledDockerContainerResolver[namespace=local]] found description [None] galaxy.tool_util.deps.containers INFO 2024-02-23 14:30:58,675 [pN:main.1,p:78709,tN:LocalRunner.work_thread-3] Checking with container resolver [MulledDockerContainerResolver[namespace=biocontainers]] found description [None] galaxy.tool_util.deps.containers INFO 2024-02-23 14:30:58,675 [pN:main.1,p:78709,tN:LocalRunner.work_thread-3] Checking with container resolver [BuildDockerContainerResolver[namespace=local]] found description [None] galaxy.jobs.command_factory INFO 2024-02-23 14:30:58,706 [pN:main.1,p:78709,tN:LocalRunner.work_thread-3] Built script [/tmp/tmpqrlh6ih1/job_working_directory/000/1/tool_script.sh] for tool command [python '/scratch/rico/galaxy/lib/galaxy/tools/data_fetch.py' --galaxy-root '/scratch/rico/galaxy' --datatypes-registry '/tmp/tmpqrlh6ih1/job_working_directory/000/1/registry.xml' --request-version '1' --request '/tmp/tmpqrlh6ih1/job_working_directory/000/1/configs/tmpnmy96xuh'] galaxy.jobs.runners DEBUG 2024-02-23 14:30:58,757 [pN:main.1,p:78709,tN:LocalRunner.work_thread-3] (1) command is: mkdir -p working outputs configs if [ -d _working ]; then rm -rf working/ outputs/ configs/; cp -R _working working; cp -R _outputs outputs; cp -R _configs configs else cp -R working _working; cp -R outputs _outputs; cp -R configs _configs fi cd working; /bin/bash /tmp/tmpqrlh6ih1/job_working_directory/000/1/tool_script.sh > '../outputs/tool_stdout' 2> '../outputs/tool_stderr'; return_code=$?; echo $return_code > /tmp/tmpqrlh6ih1/job_working_directory/000/1/galaxy_1.ec; cd '/tmp/tmpqrlh6ih1/job_working_directory/000/1'; [ "$GALAXY_VIRTUAL_ENV" = "None" ] && GALAXY_VIRTUAL_ENV="$_GALAXY_VIRTUAL_ENV"; _galaxy_setup_environment True; python metadata/set.py; sh -c "exit $return_code" galaxy.jobs.runners.local DEBUG 2024-02-23 14:30:58,781 [pN:main.1,p:78709,tN:LocalRunner.work_thread-3] (1) executing job script: /tmp/tmpqrlh6ih1/job_working_directory/000/1/galaxy_1.sh uvicorn.access INFO 2024-02-23 14:30:59,399 [pN:main.1,p:78709,tN:MainThread] 127.0.0.1:49334 - "GET /history/current_history_json?since=2024-02-23T19:29:48.000464 HTTP/1.1" 200 uvicorn.access INFO 2024-02-23 14:30:59,459 [pN:main.1,p:78709,tN:MainThread] 127.0.0.1:49334 - "GET /api/histories/e94ef2b25ec88be9/contents?v=dev&limit=1000&q=update_time-ge&qv=2024-02-23T19:29:48.589Z HTTP/1.1" 200 uvicorn.access INFO 2024-02-23 14:30:59,535 [pN:main.1,p:78709,tN:MainThread] 127.0.0.1:49334 - "GET /api/users/e94ef2b25ec88be9 HTTP/1.1" 200 uvicorn.access INFO 2024-02-23 14:30:59,564 [pN:main.1,p:78709,tN:MainThread] 127.0.0.1:49344 - "GET /api/histories/e94ef2b25ec88be9/contents?v=dev&order=hid&offset=0&limit=100&q=deleted&qv=false&q=visible&qv=true HTTP/1.1" 200 uvicorn.access INFO 2024-02-23 14:31:02,523 [pN:main.1,p:78709,tN:MainThread] 127.0.0.1:49346 - "GET /history/current_history_json?since=2024-02-23T19:30:58.000828 HTTP/1.1" 200 galaxy.jobs.runners.util.process_groups DEBUG 2024-02-23 14:31:05,073 [pN:main.1,p:78709,tN:LocalRunner.work_thread-3] check_pg(): No process found in process group 78818 galaxy.jobs.runners.local DEBUG 2024-02-23 14:31:05,073 [pN:main.1,p:78709,tN:LocalRunner.work_thread-3] execution finished: /tmp/tmpqrlh6ih1/job_working_directory/000/1/galaxy_1.sh galaxy.jobs DEBUG 2024-02-23 14:31:05,098 [pN:main.1,p:78709,tN:LocalRunner.work_thread-3] finish(): Moved /tmp/tmpqrlh6ih1/job_working_directory/000/1/outputs/dataset_b25039b4-189c-4c5a-9380-009d996fbf23.dat to /tmp/tmpqrlh6ih1/files/b/2/5/dataset_b25039b4-189c-4c5a-9380-009d996fbf23.dat galaxy.tool_util.provided_metadata DEBUG 2024-02-23 14:31:05,104 [pN:main.1,p:78709,tN:LocalRunner.work_thread-3] unnamed outputs [{'__unnamed_outputs': [{'destination': {'type': 'hdas'}, 'elements': [{'name': 'fcsadaptor_prok_test.fa.gz', 'dbkey': '?', 'ext': 'fasta.gz', 'link_data_only': False, 'sources': [], 'hashes': [], 'info': 'uploaded fasta.gz file', 'state': 'ok', 'filename': '/tmp/tmpqrlh6ih1/job_working_directory/000/1/working/gxupload_0', 'object_id': 1}]}]}] galaxy.jobs DEBUG 2024-02-23 14:31:05,242 [pN:main.1,p:78709,tN:LocalRunner.work_thread-3] job_wrapper.finish for job 1 executed (150.364 ms) uvicorn.access INFO 2024-02-23 14:31:05,558 [pN:main.1,p:78709,tN:MainThread] 127.0.0.1:49360 - "GET /history/current_history_json?since=2024-02-23T19:30:58.000828 HTTP/1.1" 200 uvicorn.access INFO 2024-02-23 14:31:05,603 [pN:main.1,p:78709,tN:MainThread] 127.0.0.1:49360 - "GET /api/histories/e94ef2b25ec88be9/contents?v=dev&limit=1000&q=update_time-ge&qv=2024-02-23T19:30:59.408Z HTTP/1.1" 200 uvicorn.access INFO 2024-02-23 14:31:05,655 [pN:main.1,p:78709,tN:MainThread] 127.0.0.1:49360 - "GET /api/users/e94ef2b25ec88be9 HTTP/1.1" 200 uvicorn.access INFO 2024-02-23 14:31:05,682 [pN:main.1,p:78709,tN:MainThread] 127.0.0.1:49370 - "GET /api/histories/e94ef2b25ec88be9/contents?v=dev&order=hid&offset=0&limit=100&q=deleted&qv=false&q=visible&qv=true HTTP/1.1" 200 uvicorn.access INFO 2024-02-23 14:31:08,420 [pN:main.1,p:78709,tN:MainThread] 127.0.0.1:54894 - "GET /api/entry_points?running=true HTTP/1.1" 200 uvicorn.access INFO 2024-02-23 14:31:08,654 [pN:main.1,p:78709,tN:MainThread] 127.0.0.1:54894 - "GET /history/current_history_json?since=2024-02-23T19:31:05.000216 HTTP/1.1" 200 uvicorn.access INFO 2024-02-23 14:31:11,688 [pN:main.1,p:78709,tN:MainThread] 127.0.0.1:54896 - "GET /history/current_history_json?since=2024-02-23T19:31:05.000216 HTTP/1.1" 200 uvicorn.access INFO 2024-02-23 14:31:14,719 [pN:main.1,p:78709,tN:MainThread] 127.0.0.1:54910 - "GET /history/current_history_json?since=2024-02-23T19:31:05.000216 HTTP/1.1" 200 uvicorn.access INFO 2024-02-23 14:31:17,748 [pN:main.1,p:78709,tN:MainThread] 127.0.0.1:34476 - "GET /history/current_history_json?since=2024-02-23T19:31:05.000216 HTTP/1.1" 200 uvicorn.access INFO 2024-02-23 14:31:18,420 [pN:main.1,p:78709,tN:MainThread] 127.0.0.1:34476 - "GET /api/entry_points?running=true HTTP/1.1" 200 uvicorn.access INFO 2024-02-23 14:31:20,799 [pN:main.1,p:78709,tN:MainThread] 127.0.0.1:34488 - "GET /history/current_history_json?since=2024-02-23T19:31:05.000216 HTTP/1.1" 200 uvicorn.access INFO 2024-02-23 14:31:23,827 [pN:main.1,p:78709,tN:MainThread] 127.0.0.1:34494 - "GET /history/current_history_json?since=2024-02-23T19:31:05.000216 HTTP/1.1" 200 uvicorn.access INFO 2024-02-23 14:31:26,858 [pN:main.1,p:78709,tN:MainThread] 127.0.0.1:33276 - "GET /history/current_history_json?since=2024-02-23T19:31:05.000216 HTTP/1.1" 200 uvicorn.access INFO 2024-02-23 14:31:28,420 [pN:main.1,p:78709,tN:MainThread] 127.0.0.1:33276 - "GET /api/entry_points?running=true HTTP/1.1" 200 uvicorn.access INFO 2024-02-23 14:31:29,887 [pN:main.1,p:78709,tN:MainThread] 127.0.0.1:33276 - "GET /history/current_history_json?since=2024-02-23T19:31:05.000216 HTTP/1.1" 200 uvicorn.access INFO 2024-02-23 14:31:32,919 [pN:main.1,p:78709,tN:MainThread] 127.0.0.1:33290 - "GET /history/current_history_json?since=2024-02-23T19:31:05.000216 HTTP/1.1" 200 ==> /tmp/tmpqrlh6ih1/gravity/log/celery-beat.log <== [2024-02-23 14:31:34,086: DEBUG/MainProcess] beat: Synchronizing schedule... [2024-02-23 14:31:34,099: INFO/MainProcess] Scheduler: Sending due task clean-object-store-caches (galaxy.clean_object_store_caches) [2024-02-23 14:31:34,141: DEBUG/MainProcess] galaxy.clean_object_store_caches sent. id->0cd32a96-9d0e-4f4d-9772-212740dc8b8c [2024-02-23 14:31:34,142: DEBUG/MainProcess] beat: Waking up in 5.00 minutes. ==> /tmp/tmpqrlh6ih1/gravity/log/celery.log <== [2024-02-23 14:31:35,137: INFO/MainProcess] Task galaxy.clean_object_store_caches[0cd32a96-9d0e-4f4d-9772-212740dc8b8c] received [2024-02-23 14:31:35,137: DEBUG/MainProcess] TaskPool: Apply <function fast_trace_task at 0x7f9f1756ed90> (args:('galaxy.clean_object_store_caches', '0cd32a96-9d0e-4f4d-9772-212740dc8b8c', {'lang': 'py', 'task': 'galaxy.clean_object_store_caches', 'id': '0cd32a96-9d0e-4f4d-9772-212740dc8b8c', 'shadow': None, 'eta': None, 'expires': None, 'group': None, 'group_index': None, 'retries': 0, 'timelimit': [None, None], 'root_id': '0cd32a96-9d0e-4f4d-9772-212740dc8b8c', 'parent_id': None, 'argsrepr': '()', 'kwargsrepr': '{}', 'origin': 'gen78504@laila', 'ignore_result': False, 'properties': {'correlation_id': '0cd32a96-9d0e-4f4d-9772-212740dc8b8c', 'reply_to': 'a834fe8d-fc9c-31a2-9791-be846a6fc4af', 'delivery_mode': 2, 'delivery_info': {'exchange': '', 'routing_key': 'galaxy.internal'}, 'priority': 0, 'body_encoding': 'base64', 'delivery_tag': '00442f4c-cdc1-41fb-b9c9-cf8c0d8ac151'}, 'reply_to': 'a834fe8d-fc9c-31a2-9791-be846a6fc4af', 'correlation_id': '0cd32a96-9d0e-4f4d-9772-212740dc8b8c', 'hostname': 'celery@laila', 'delivery_info': {'exchange': '', 'routing_key': 'galaxy.internal', 'priority': 0, 'redelivered': None},... kwargs:{}) [2024-02-23 14:31:35,529: DEBUG/MainProcess] python path is: /scratch/rico/.planemo/gx_venv_3/bin, /scratch/rico/galaxy/lib, /usr/lib/python37.zip, /usr/lib/python3.7, /usr/lib/python3.7/lib-dynload, /scratch/rico/.planemo/gx_venv_3/lib/python3.7/site-packages [2024-02-23 14:31:35,530: DEBUG/MainProcess] Configuration directory is /tmp/tmpqrlh6ih1 [2024-02-23 14:31:35,530: DEBUG/MainProcess] Data directory is /scratch/rico/galaxy/database [2024-02-23 14:31:35,530: DEBUG/MainProcess] Managed config directory is /tmp/tmpqrlh6ih1 [2024-02-23 14:31:35,559: WARNING/MainProcess] Option master_api_key has been deprecated in favor of bootstrap_admin_api_key [2024-02-23 14:31:35,560: DEBUG/MainProcess] No extra version JSON file detected at /scratch/rico/galaxy/version.json [2024-02-23 14:31:35,561: WARNING/MainProcess] No corresponding location name exists for location code: . [2024-02-23 14:31:35,561: INFO/MainProcess] Using global default values for location name and carbon intensity... [2024-02-23 14:31:35,563: INFO/MainProcess] Install database targeting Galaxy's database configuration. [2024-02-23 14:31:35,566: DEBUG/main] WeblessApplicationStack initialized [2024-02-23 14:31:35,570: DEBUG/main] Loading job configuration from /scratch/rico/galaxytools/tools/ncbi_fcs_adaptor/planemo_job_conf.xml [2024-02-23 14:31:35,570: DEBUG/main] Read job configuration from file: /scratch/rico/galaxytools/tools/ncbi_fcs_adaptor/planemo_job_conf.xml [2024-02-23 14:31:35,580: INFO/main] JobConfiguration: No job handler assignment method is set, defaulting to 'HANDLER_ASSIGNMENT_METHODS.DB_SKIP_LOCKED', set the `assign_with` attribute on <handlers> to override the default [2024-02-23 14:31:35,580: INFO/main] Job handler assignment methods set to: db-skip-locked [2024-02-23 14:31:35,581: DEBUG/main] default set to child with id or tag 'docker_local' [2024-02-23 14:31:35,581: DEBUG/main] Done loading job configuration [2024-02-23 14:31:35,770: WARNING/main] No vault configured. We recommend defining the vault_config_file setting in galaxy.yml ==> /tmp/tmpqrlh6ih1/gravity/log/gunicorn.log <== uvicorn.access INFO 2024-02-23 14:31:35,947 [pN:main.1,p:78709,tN:MainThread] 127.0.0.1:59038 - "GET /history/current_history_json?since=2024-02-23T19:31:05.000216 HTTP/1.1" 200 ==> /tmp/tmpqrlh6ih1/gravity/log/celery.log <== [2024-02-23 14:31:36,006: DEBUG/main] Loading datatypes from /scratch/rico/galaxy/lib/galaxy/config/sample/datatypes_conf.xml.sample [2024-02-23 14:31:36,007: DEBUG/main] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension source.h. [2024-02-23 14:31:36,007: DEBUG/main] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension source.c. [2024-02-23 14:31:36,007: DEBUG/main] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension source.cpp. [2024-02-23 14:31:36,007: DEBUG/main] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension source.py. [2024-02-23 14:31:36,007: DEBUG/main] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension source.go. [2024-02-23 14:31:36,007: DEBUG/main] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension source.rs. [2024-02-23 14:31:36,008: DEBUG/main] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension source.cs. [2024-02-23 14:31:36,008: DEBUG/main] Retrieved datatype module galaxy.datatypes.binary:Binary from the datatype registry for extension hep.root. [2024-02-23 14:31:36,008: DEBUG/main] Retrieved datatype module galaxy.datatypes.binary:JP2 from the datatype registry for extension jp2. [2024-02-23 14:31:36,008: DEBUG/main] Retrieved datatype module galaxy.datatypes.binary:Ab1 from the datatype registry for extension ab1. [2024-02-23 14:31:36,009: DEBUG/main] Retrieved datatype module galaxy.datatypes.assembly:Amos from the datatype registry for extension afg. [2024-02-23 14:31:36,009: DEBUG/main] Retrieved datatype module galaxy.datatypes.goldenpath:GoldenPath from the datatype registry for extension agp. [2024-02-23 14:31:36,010: DEBUG/main] Retrieved datatype module galaxy.datatypes.anvio:AnvioComposite from the datatype registry for extension anvio_cog_profile. [2024-02-23 14:31:36,010: DEBUG/main] Retrieved datatype module galaxy.datatypes.anvio:AnvioComposite from the datatype registry for extension anvio_composite. [2024-02-23 14:31:36,010: DEBUG/main] Retrieved datatype module galaxy.datatypes.data:Data from the datatype registry for extension anvio_classifier. [2024-02-23 14:31:36,011: DEBUG/main] Retrieved datatype module galaxy.datatypes.anvio:AnvioContigsDB from the datatype registry for extension anvio_contigs_db. [2024-02-23 14:31:36,011: DEBUG/main] Retrieved datatype module galaxy.datatypes.anvio:AnvioDB from the datatype registry for extension anvio_db. [2024-02-23 14:31:36,011: DEBUG/main] Retrieved datatype module galaxy.datatypes.anvio:AnvioGenomesDB from the datatype registry for extension anvio_genomes_db. [2024-02-23 14:31:36,011: DEBUG/main] Retrieved datatype module galaxy.datatypes.anvio:AnvioPanDB from the datatype registry for extension anvio_pan_db. [2024-02-23 14:31:36,011: DEBUG/main] Retrieved datatype module galaxy.datatypes.anvio:AnvioComposite from the datatype registry for extension anvio_pfam_profile. [2024-02-23 14:31:36,011: DEBUG/main] Retrieved datatype module galaxy.datatypes.anvio:AnvioProfileDB from the datatype registry for extension anvio_profile_db. [2024-02-23 14:31:36,011: DEBUG/main] Retrieved datatype module galaxy.datatypes.anvio:AnvioSamplesDB from the datatype registry for extension anvio_samples_db. [2024-02-23 14:31:36,011: DEBUG/main] Retrieved datatype module galaxy.datatypes.text:Json from the datatype registry for extension anvio_state. [2024-02-23 14:31:36,011: DEBUG/main] Retrieved datatype module galaxy.datatypes.anvio:AnvioStructureDB from the datatype registry for extension anvio_structure_db. [2024-02-23 14:31:36,011: DEBUG/main] Retrieved datatype module galaxy.datatypes.tabular:TSV from the datatype registry for extension anvio_variability. [2024-02-23 14:31:36,011: DEBUG/main] Retrieved datatype module galaxy.datatypes.text:Arff from the datatype registry for extension arff. [2024-02-23 14:31:36,012: DEBUG/main] Retrieved datatype module galaxy.datatypes.text:Paf from the datatype registry for extension paf. [2024-02-23 14:31:36,012: DEBUG/main] Retrieved datatype module galaxy.datatypes.text:Gfa1 from the datatype registry for extension gfa1. [2024-02-23 14:31:36,012: DEBUG/main] Retrieved datatype module galaxy.datatypes.text:Gfa2 from the datatype registry for extension gfa2. [2024-02-23 14:31:36,012: DEBUG/main] Retrieved datatype module galaxy.datatypes.data:GenericAsn1 from the datatype registry for extension asn1. [2024-02-23 14:31:36,012: DEBUG/main] Retrieved datatype module galaxy.datatypes.binary:GenericAsn1Binary from the datatype registry for extension asn1-binary. [2024-02-23 14:31:36,012: DEBUG/main] Retrieved datatype module galaxy.datatypes.sequence:Axt from the datatype registry for extension axt. [2024-02-23 14:31:36,012: DEBUG/main] Retrieved datatype module galaxy.datatypes.tabular:FeatureLocationIndex from the datatype registry for extension fli. [2024-02-23 14:31:36,012: DEBUG/main] Retrieved datatype module galaxy.datatypes.binary:Bam from the datatype registry for extension bam. [2024-02-23 14:31:36,012: DEBUG/main] Retrieved datatype module galaxy.datatypes.binary:Binary from the datatype registry for extension bai. [2024-02-23 14:31:36,012: DEBUG/main] Retrieved datatype module galaxy.datatypes.binary:BamInputSorted from the datatype registry for extension qname_input_sorted.bam. [2024-02-23 14:31:36,013: DEBUG/main] Retrieved datatype module galaxy.datatypes.binary:BamQuerynameSorted from the datatype registry for extension qname_sorted.bam. [2024-02-23 14:31:36,013: DEBUG/main] Retrieved datatype module galaxy.datatypes.binary:BamNative from the datatype registry for extension unsorted.bam. [2024-02-23 14:31:36,013: DEBUG/main] Retrieved datatype module galaxy.datatypes.binary:ProBam from the datatype registry for extension probam. [2024-02-23 14:31:36,013: DEBUG/main] Retrieved datatype module galaxy.datatypes.binary:CRAM from the datatype registry for extension cram. [2024-02-23 14:31:36,013: DEBUG/main] Retrieved datatype module galaxy.datatypes.interval:Bed from the datatype registry for extension bed. [2024-02-23 14:31:36,013: DEBUG/main] Retrieved datatype module galaxy.datatypes.interval:BedGraph from the datatype registry for extension bedgraph. [2024-02-23 14:31:36,013: DEBUG/main] Retrieved datatype module galaxy.datatypes.interval:BedStrict from the datatype registry for extension bedstrict. [2024-02-23 14:31:36,013: DEBUG/main] Retrieved datatype module galaxy.datatypes.interval:Bed6 from the datatype registry for extension bed6. [2024-02-23 14:31:36,013: DEBUG/main] Retrieved datatype module galaxy.datatypes.interval:Bed12 from the datatype registry for extension bed12. [2024-02-23 14:31:36,014: DEBUG/main] Retrieved datatype module galaxy.datatypes.interval:ProBed from the datatype registry for extension probed. [2024-02-23 14:31:36,014: DEBUG/main] Retrieved datatype module galaxy.datatypes.chrominfo:ChromInfo from the datatype registry for extension len. [2024-02-23 14:31:36,014: DEBUG/main] Retrieved datatype module galaxy.datatypes.binary:DAA from the datatype registry for extension daa. [2024-02-23 14:31:36,014: DEBUG/main] Retrieved datatype module galaxy.datatypes.binary:RMA6 from the datatype registry for extension rma6. [2024-02-23 14:31:36,014: DEBUG/main] Retrieved datatype module galaxy.datatypes.binary:DMND from the datatype registry for extension dmnd. [2024-02-23 14:31:36,014: DEBUG/main] Retrieved datatype module galaxy.datatypes.binary:Parquet from the datatype registry for extension parquet. [2024-02-23 14:31:36,014: DEBUG/main] Retrieved datatype module galaxy.datatypes.binary:Idat from the datatype registry for extension idat. [2024-02-23 14:31:36,014: DEBUG/main] Retrieved datatype module galaxy.datatypes.binary:BigBed from the datatype registry for extension bigbed. [2024-02-23 14:31:36,014: DEBUG/main] Retrieved datatype module galaxy.datatypes.binary:BigWig from the datatype registry for extension bigwig. [2024-02-23 14:31:36,015: DEBUG/main] Retrieved datatype module galaxy.datatypes.binary:Binary from the datatype registry for extension cxb. [2024-02-23 14:31:36,015: DEBUG/main] Retrieved datatype module galaxy.datatypes.interval:ChromatinInteractions from the datatype registry for extension chrint. [2024-02-23 14:31:36,015: DEBUG/main] Retrieved datatype module galaxy.datatypes.tabular:CSV from the datatype registry for extension csv. [2024-02-23 14:31:36,015: DEBUG/main] Retrieved datatype module galaxy.datatypes.tabular:TSV from the datatype registry for extension tsv. [2024-02-23 14:31:36,015: DEBUG/main] Retrieved datatype module galaxy.datatypes.tabular:TSV from the datatype registry for extension intermine_tabular. [2024-02-23 14:31:36,015: DEBUG/main] Retrieved datatype module galaxy.datatypes.interval:CustomTrack from the datatype registry for extension customtrack. [2024-02-23 14:31:36,016: DEBUG/main] Retrieved datatype module galaxy.datatypes.ngsindex:BowtieColorIndex from the datatype registry for extension bowtie_color_index. [2024-02-23 14:31:36,016: DEBUG/main] Retrieved datatype module galaxy.datatypes.ngsindex:BowtieBaseIndex from the datatype registry for extension bowtie_base_index. [2024-02-23 14:31:36,016: DEBUG/main] Retrieved datatype module galaxy.datatypes.sequence:csFasta from the datatype registry for extension csfasta. [2024-02-23 14:31:36,016: DEBUG/main] Retrieved datatype module galaxy.datatypes.data:Data from the datatype registry for extension data. [2024-02-23 14:31:36,016: DEBUG/main] Retrieved datatype module galaxy.datatypes.binary:Binary from the datatype registry for extension gz. [2024-02-23 14:31:36,016: DEBUG/main] Retrieved datatype module galaxy.datatypes.binary:Binary from the datatype registry for extension binary. [2024-02-23 14:31:36,016: DEBUG/main] Retrieved datatype module galaxy.datatypes.text:Json from the datatype registry for extension d3_hierarchy. [2024-02-23 14:31:36,016: DEBUG/main] Retrieved datatype module galaxy.datatypes.text:ImgtJson from the datatype registry for extension imgt.json. [2024-02-23 14:31:36,016: DEBUG/main] Retrieved datatype module galaxy.datatypes.text:GeoJson from the datatype registry for extension geojson. [2024-02-23 14:31:36,016: DEBUG/main] Retrieved datatype module galaxy.datatypes.text:Json from the datatype registry for extension data_manager_json. [2024-02-23 14:31:36,016: DEBUG/main] Retrieved datatype module galaxy.datatypes.sequence:DotBracket from the datatype registry for extension dbn. [2024-02-23 14:31:36,017: DEBUG/main] Retrieved datatype module galaxy.datatypes.tabular:Tabular from the datatype registry for extension fai. [2024-02-23 14:31:36,017: DEBUG/main] Retrieved datatype module galaxy.datatypes.sequence:Fasta from the datatype registry for extension fasta. [2024-02-23 14:31:36,017: DEBUG/main] Retrieved datatype module galaxy.datatypes.sequence:Fastg from the datatype registry for extension fastg. [2024-02-23 14:31:36,017: DEBUG/main] Retrieved datatype module galaxy.datatypes.sequence:Fastq from the datatype registry for extension fastq. [2024-02-23 14:31:36,017: DEBUG/main] Retrieved datatype module galaxy.datatypes.sequence:FastqSanger from the datatype registry for extension fastqsanger. [2024-02-23 14:31:36,017: DEBUG/main] Retrieved datatype module galaxy.datatypes.sequence:FastqSolexa from the datatype registry for extension fastqsolexa. [2024-02-23 14:31:36,018: DEBUG/main] Retrieved datatype module galaxy.datatypes.sequence:FastqCSSanger from the datatype registry for extension fastqcssanger. [2024-02-23 14:31:36,018: DEBUG/main] Retrieved datatype module galaxy.datatypes.sequence:FastqIllumina from the datatype registry for extension fastqillumina. [2024-02-23 14:31:36,018: DEBUG/main] Retrieved datatype module galaxy.datatypes.sequence:SequenceSplitLocations from the datatype registry for extension fqtoc. [2024-02-23 14:31:36,018: DEBUG/main] Retrieved datatype module galaxy.datatypes.tabular:Eland from the datatype registry for extension eland. [2024-02-23 14:31:36,018: DEBUG/main] Retrieved datatype module galaxy.datatypes.tabular:ElandMulti from the datatype registry for extension elandmulti. [2024-02-23 14:31:36,018: DEBUG/main] Retrieved datatype module galaxy.datatypes.tracks:GeneTrack from the datatype registry for extension genetrack. [2024-02-23 14:31:36,019: DEBUG/main] Retrieved datatype module galaxy.datatypes.interval:Gff from the datatype registry for extension gff. [2024-02-23 14:31:36,019: DEBUG/main] Retrieved datatype module galaxy.datatypes.interval:Gff3 from the datatype registry for extension gff3. [2024-02-23 14:31:36,019: DEBUG/main] Retrieved datatype module galaxy.datatypes.images:Gif from the datatype registry for extension gif. [2024-02-23 14:31:36,019: DEBUG/main] Retrieved datatype module galaxy.datatypes.images:Gmaj from the datatype registry for extension gmaj.zip. [2024-02-23 14:31:36,019: DEBUG/main] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension graph_dot. [2024-02-23 14:31:36,019: DEBUG/main] Retrieved datatype module galaxy.datatypes.interval:Gtf from the datatype registry for extension gtf. [2024-02-23 14:31:36,019: DEBUG/main] Retrieved datatype module galaxy.datatypes.binary:Binary from the datatype registry for extension toolshed.gz. [2024-02-23 14:31:36,019: DEBUG/main] Retrieved datatype module galaxy.datatypes.binary:Binary from the datatype registry for extension hdf4. [2024-02-23 14:31:36,020: DEBUG/main] Retrieved datatype module galaxy.datatypes.binary:H5 from the datatype registry for extension h5. [2024-02-23 14:31:36,020: DEBUG/main] Retrieved datatype module galaxy.datatypes.binary:H5 from the datatype registry for extension scool. [2024-02-23 14:31:36,020: DEBUG/main] Retrieved datatype module galaxy.datatypes.binary:Grib from the datatype registry for extension grib. [2024-02-23 14:31:36,020: DEBUG/main] Retrieved datatype module galaxy.datatypes.binary:Loom from the datatype registry for extension loom. [2024-02-23 14:31:36,020: DEBUG/main] Retrieved datatype module galaxy.datatypes.binary:Anndata from the datatype registry for extension h5ad. [2024-02-23 14:31:36,020: DEBUG/main] Retrieved datatype module galaxy.datatypes.binary:Visium from the datatype registry for extension visium.tar.gz. [2024-02-23 14:31:36,020: DEBUG/main] Retrieved datatype module galaxy.datatypes.binary:H5 from the datatype registry for extension mz5. [2024-02-23 14:31:36,020: DEBUG/main] Retrieved datatype module galaxy.datatypes.text:Json from the datatype registry for extension hyphy_results.json. [2024-02-23 14:31:36,020: DEBUG/main] Retrieved datatype module galaxy.datatypes.text:Json from the datatype registry for extension hivtrace. [2024-02-23 14:31:36,020: DEBUG/main] Retrieved datatype module galaxy.datatypes.binary:Cool from the datatype registry for extension cool. [2024-02-23 14:31:36,020: DEBUG/main] Retrieved datatype module galaxy.datatypes.binary:MCool from the datatype registry for extension mcool. [2024-02-23 14:31:36,021: DEBUG/main] Retrieved datatype module galaxy.datatypes.binary:H5MLM from the datatype registry for extension h5mlm. [2024-02-23 14:31:36,021: DEBUG/main] Retrieved datatype module galaxy.datatypes.binary:LudwigModel from the datatype registry for extension ludwig_model. [2024-02-23 14:31:36,021: DEBUG/main] Retrieved datatype module galaxy.datatypes.text:Html from the datatype registry for extension html. [2024-02-23 14:31:36,021: DEBUG/main] Retrieved datatype module galaxy.datatypes.text:Html from the datatype registry for extension ludwig_report.html. [2024-02-23 14:31:36,021: DEBUG/main] Retrieved datatype module galaxy.datatypes.interval:Interval from the datatype registry for extension interval. [2024-02-23 14:31:36,021: DEBUG/main] Retrieved datatype module galaxy.datatypes.binary:Binary from the datatype registry for extension jellyfish. [2024-02-23 14:31:36,021: DEBUG/main] Retrieved datatype module galaxy.datatypes.binary:Binary from the datatype registry for extension ktab. [2024-02-23 14:31:36,021: DEBUG/main] Retrieved datatype module galaxy.datatypes.binary:Binary from the datatype registry for extension hist. [2024-02-23 14:31:36,021: DEBUG/main] Retrieved datatype module galaxy.datatypes.binary:Binary from the datatype registry for extension prof. [2024-02-23 14:31:36,104: DEBUG/main] Retrieved datatype module galaxy.datatypes.isa:IsaTab from the datatype registry for extension isa-tab. [2024-02-23 14:31:36,105: DEBUG/main] Retrieved datatype module galaxy.datatypes.isa:IsaJson from the datatype registry for extension isa-json. [2024-02-23 14:31:36,105: DEBUG/main] Retrieved datatype module galaxy.datatypes.tabular:Tabular from the datatype registry for extension picard_interval_list. [2024-02-23 14:31:36,105: DEBUG/main] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension gatk_interval. [2024-02-23 14:31:36,105: DEBUG/main] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension gatk_report. [2024-02-23 14:31:36,105: DEBUG/main] Retrieved datatype module galaxy.datatypes.tabular:Tabular from the datatype registry for extension gatk_dbsnp. [2024-02-23 14:31:36,106: DEBUG/main] Retrieved datatype module galaxy.datatypes.tabular:Tabular from the datatype registry for extension gatk_tranche. [2024-02-23 14:31:36,106: DEBUG/main] Retrieved datatype module galaxy.datatypes.tabular:Tabular from the datatype registry for extension gatk_recal. [2024-02-23 14:31:36,106: DEBUG/main] Retrieved datatype module galaxy.datatypes.tabular:Tabular from the datatype registry for extension cnn. [2024-02-23 14:31:36,106: DEBUG/main] Retrieved datatype module galaxy.datatypes.tabular:Tabular from the datatype registry for extension cns. [2024-02-23 14:31:36,106: DEBUG/main] Retrieved datatype module galaxy.datatypes.tabular:Tabular from the datatype registry for extension cnr. [2024-02-23 14:31:36,106: DEBUG/main] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension hhr. [2024-02-23 14:31:36,106: DEBUG/main] Retrieved datatype module galaxy.datatypes.images:Jpg from the datatype registry for extension jpg. [2024-02-23 14:31:36,106: DEBUG/main] Retrieved datatype module galaxy.datatypes.images:Tiff from the datatype registry for extension tiff. [2024-02-23 14:31:36,106: DEBUG/main] Retrieved datatype module galaxy.datatypes.images:Tiff from the datatype registry for extension tf2. [2024-02-23 14:31:36,107: DEBUG/main] Retrieved datatype module galaxy.datatypes.images:Tiff from the datatype registry for extension tf8. [2024-02-23 14:31:36,107: DEBUG/main] Retrieved datatype module galaxy.datatypes.images:Tiff from the datatype registry for extension btf. [2024-02-23 14:31:36,107: DEBUG/main] Retrieved datatype module galaxy.datatypes.images:Tiff from the datatype registry for extension tif. [2024-02-23 14:31:36,107: DEBUG/main] Retrieved datatype module galaxy.datatypes.images:Tiff from the datatype registry for extension svs. [2024-02-23 14:31:36,107: DEBUG/main] Retrieved datatype module galaxy.datatypes.images:Tiff from the datatype registry for extension scn. [2024-02-23 14:31:36,107: DEBUG/main] Retrieved datatype module galaxy.datatypes.images:Tiff from the datatype registry for extension bif. [2024-02-23 14:31:36,107: DEBUG/main] Retrieved datatype module galaxy.datatypes.images:OMETiff from the datatype registry for extension ome.tiff. [2024-02-23 14:31:36,107: DEBUG/main] Retrieved datatype module galaxy.datatypes.images:Hamamatsu from the datatype registry for extension vms. [2024-02-23 14:31:36,107: DEBUG/main] Retrieved datatype module galaxy.datatypes.images:Hamamatsu from the datatype registry for extension vmu. [2024-02-23 14:31:36,107: DEBUG/main] Retrieved datatype module galaxy.datatypes.images:Hamamatsu from the datatype registry for extension ndpi. [2024-02-23 14:31:36,107: DEBUG/main] Retrieved datatype module galaxy.datatypes.images:Mirax from the datatype registry for extension mrxs. [2024-02-23 14:31:36,108: DEBUG/main] Retrieved datatype module galaxy.datatypes.images:Sakura from the datatype registry for extension svslide. [2024-02-23 14:31:36,108: DEBUG/main] Retrieved datatype module galaxy.datatypes.images:Bmp from the datatype registry for extension bmp. [2024-02-23 14:31:36,108: DEBUG/main] Retrieved datatype module galaxy.datatypes.images:Im from the datatype registry for extension im. [2024-02-23 14:31:36,108: DEBUG/main] Retrieved datatype module galaxy.datatypes.images:Pcd from the datatype registry for extension pcd. [2024-02-23 14:31:36,108: DEBUG/main] Retrieved datatype module galaxy.datatypes.images:Pcx from the datatype registry for extension pcx. [2024-02-23 14:31:36,108: DEBUG/main] Retrieved datatype module galaxy.datatypes.images:Ppm from the datatype registry for extension ppm. [2024-02-23 14:31:36,108: DEBUG/main] Retrieved datatype module galaxy.datatypes.images:Psd from the datatype registry for extension psd. [2024-02-23 14:31:36,108: DEBUG/main] Retrieved datatype module galaxy.datatypes.images:Xbm from the datatype registry for extension xbm. [2024-02-23 14:31:36,108: DEBUG/main] Retrieved datatype module galaxy.datatypes.images:Xpm from the datatype registry for extension xpm. [2024-02-23 14:31:36,108: DEBUG/main] Retrieved datatype module galaxy.datatypes.images:Rgb from the datatype registry for extension rgb. [2024-02-23 14:31:36,108: DEBUG/main] Retrieved datatype module galaxy.datatypes.images:Pbm from the datatype registry for extension pbm. [2024-02-23 14:31:36,108: DEBUG/main] Retrieved datatype module galaxy.datatypes.images:Pgm from the datatype registry for extension pgm. [2024-02-23 14:31:36,108: DEBUG/main] Retrieved datatype module galaxy.datatypes.images:Nrrd from the datatype registry for extension nrrd. [2024-02-23 14:31:36,108: DEBUG/main] Retrieved datatype module galaxy.datatypes.images:Nrrd from the datatype registry for extension nhdr. [2024-02-23 14:31:36,109: DEBUG/main] Retrieved datatype module galaxy.datatypes.sequence:RNADotPlotMatrix from the datatype registry for extension rna_eps. [2024-02-23 14:31:36,110: DEBUG/main] Retrieved datatype module galaxy.datatypes.qiime2:QIIME2Artifact from the datatype registry for extension qza. [2024-02-23 14:31:36,110: DEBUG/main] Retrieved datatype module galaxy.datatypes.qiime2:QIIME2Visualization from the datatype registry for extension qzv. [2024-02-23 14:31:36,110: DEBUG/main] Retrieved datatype module galaxy.datatypes.qiime2:QIIME2Metadata from the datatype registry for extension qiime2.tabular. [2024-02-23 14:31:36,110: DEBUG/main] Retrieved datatype module galaxy.datatypes.binary:CompressedZipArchive from the datatype registry for extension zip. [2024-02-23 14:31:36,110: DEBUG/main] Retrieved datatype module galaxy.datatypes.binary:CompressedZipArchive from the datatype registry for extension ncbi_genome_dataset.zip. [2024-02-23 14:31:36,110: DEBUG/main] Retrieved datatype module galaxy.datatypes.binary:CompressedArchive from the datatype registry for extension tar. [2024-02-23 14:31:36,110: DEBUG/main] Retrieved datatype module galaxy.datatypes.data:Directory from the datatype registry for extension directory. [2024-02-23 14:31:36,110: DEBUG/main] Retrieved datatype module galaxy.datatypes.text:Yaml from the datatype registry for extension yaml. [2024-02-23 14:31:36,110: DEBUG/main] Retrieved datatype module galaxy.datatypes.tabular:Tabular from the datatype registry for extension mrm. [2024-02-23 14:31:36,113: DEBUG/main] Retrieved datatype module galaxy.datatypes.proteomics:Dta from the datatype registry for extension dta. [2024-02-23 14:31:36,113: DEBUG/main] Retrieved datatype module galaxy.datatypes.proteomics:Dta2d from the datatype registry for extension dta2d. [2024-02-23 14:31:36,113: DEBUG/main] Retrieved datatype module galaxy.datatypes.proteomics:Edta from the datatype registry for extension edta. [2024-02-23 14:31:36,113: DEBUG/main] Retrieved datatype module galaxy.datatypes.proteomics:PepXml from the datatype registry for extension pepxml. [2024-02-23 14:31:36,113: DEBUG/main] Retrieved datatype module galaxy.datatypes.proteomics:PepXml from the datatype registry for extension raw_pepxml. [2024-02-23 14:31:36,113: DEBUG/main] Retrieved datatype module galaxy.datatypes.proteomics:PepXml from the datatype registry for extension peptideprophet_pepxml. [2024-02-23 14:31:36,113: DEBUG/main] Retrieved datatype module galaxy.datatypes.proteomics:PepXml from the datatype registry for extension interprophet_pepxml. [2024-02-23 14:31:36,113: DEBUG/main] Retrieved datatype module galaxy.datatypes.proteomics:ProtXML from the datatype registry for extension protxml. [2024-02-23 14:31:36,113: DEBUG/main] Retrieved datatype module galaxy.datatypes.proteomics:ParamXml from the datatype registry for extension paramxml. [2024-02-23 14:31:36,114: DEBUG/main] Retrieved datatype module galaxy.datatypes.proteomics:Kroenik from the datatype registry for extension kroenik. [2024-02-23 14:31:36,114: DEBUG/main] Retrieved datatype module galaxy.datatypes.proteomics:PepList from the datatype registry for extension peplist. [2024-02-23 14:31:36,114: DEBUG/main] Retrieved datatype module galaxy.datatypes.proteomics:PSMS from the datatype registry for extension psms. [2024-02-23 14:31:36,114: DEBUG/main] Retrieved datatype module galaxy.datatypes.proteomics:PepXmlReport from the datatype registry for extension pepxml.tsv. [2024-02-23 14:31:36,114: DEBUG/main] Retrieved datatype module galaxy.datatypes.proteomics:ProtXmlReport from the datatype registry for extension protxml.tsv. [2024-02-23 14:31:36,114: DEBUG/main] Retrieved datatype module galaxy.datatypes.proteomics:MascotDat from the datatype registry for extension mascotdat. [2024-02-23 14:31:36,114: DEBUG/main] Retrieved datatype module galaxy.datatypes.proteomics:MzIdentML from the datatype registry for extension mzid. [2024-02-23 14:31:36,114: DEBUG/main] Retrieved datatype module galaxy.datatypes.proteomics:IdXML from the datatype registry for extension idxml. [2024-02-23 14:31:36,114: DEBUG/main] Retrieved datatype module galaxy.datatypes.proteomics:TandemXML from the datatype registry for extension tandem. [2024-02-23 14:31:36,114: DEBUG/main] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension sirius.ms. [2024-02-23 14:31:36,114: DEBUG/main] Retrieved datatype module galaxy.datatypes.proteomics:ThermoRAW from the datatype registry for extension thermo.raw. [2024-02-23 14:31:36,114: DEBUG/main] Retrieved datatype module galaxy.datatypes.binary:BafTar from the datatype registry for extension brukerbaf.d.tar. [2024-02-23 14:31:36,114: DEBUG/main] Retrieved datatype module galaxy.datatypes.binary:YepTar from the datatype registry for extension agilentbrukeryep.d.tar. [2024-02-23 14:31:36,115: DEBUG/main] Retrieved datatype module galaxy.datatypes.binary:TdfTar from the datatype registry for extension brukertdf.d.tar. [2024-02-23 14:31:36,115: DEBUG/main] Retrieved datatype module galaxy.datatypes.binary:MassHunterTar from the datatype registry for extension agilentmasshunter.d.tar. [2024-02-23 14:31:36,115: DEBUG/main] Retrieved datatype module galaxy.datatypes.binary:MassLynxTar from the datatype registry for extension watersmasslynx.raw.tar. [2024-02-23 14:31:36,115: DEBUG/main] Retrieved datatype module galaxy.datatypes.binary:WiffTar from the datatype registry for extension wiff.tar. [2024-02-23 14:31:36,115: DEBUG/main] Retrieved datatype module galaxy.datatypes.binary:Wiff2Tar from the datatype registry for extension wiff2.tar. [2024-02-23 14:31:36,115: DEBUG/main] Retrieved datatype module galaxy.datatypes.proteomics:MascotXML from the datatype registry for extension mascotxml. [2024-02-23 14:31:36,115: DEBUG/main] Retrieved datatype module galaxy.datatypes.proteomics:MzTab from the datatype registry for extension mztab. [2024-02-23 14:31:36,115: DEBUG/main] Retrieved datatype module galaxy.datatypes.proteomics:MzTab2 from the datatype registry for extension mztab2. [2024-02-23 14:31:36,115: DEBUG/main] Retrieved datatype module galaxy.datatypes.proteomics:MzML from the datatype registry for extension mzml. [2024-02-23 14:31:36,115: DEBUG/main] Retrieved datatype module galaxy.datatypes.proteomics:NmrML from the datatype registry for extension nmrml. [2024-02-23 14:31:36,115: DEBUG/main] Retrieved datatype module galaxy.datatypes.binary:Meryldb from the datatype registry for extension meryldb. [2024-02-23 14:31:36,116: DEBUG/main] Retrieved datatype module galaxy.datatypes.binary:Bref3 from the datatype registry for extension bref3. [2024-02-23 14:31:36,116: DEBUG/main] Retrieved datatype module galaxy.datatypes.proteomics:Mgf from the datatype registry for extension mgf. [2024-02-23 14:31:36,116: DEBUG/main] Retrieved datatype module galaxy.datatypes.proteomics:Wiff from the datatype registry for extension wiff. [2024-02-23 14:31:36,116: DEBUG/main] Retrieved datatype module galaxy.datatypes.proteomics:Wiff2 from the datatype registry for extension wiff2. [2024-02-23 14:31:36,116: DEBUG/main] Retrieved datatype module galaxy.datatypes.proteomics:MzXML from the datatype registry for extension mzxml. [2024-02-23 14:31:36,116: DEBUG/main] Retrieved datatype module galaxy.datatypes.proteomics:MzData from the datatype registry for extension mzdata. [2024-02-23 14:31:36,116: DEBUG/main] Retrieved datatype module galaxy.datatypes.proteomics:Ms2 from the datatype registry for extension ms2. [2024-02-23 14:31:36,116: DEBUG/main] Retrieved datatype module galaxy.datatypes.proteomics:MzQuantML from the datatype registry for extension mzq. [2024-02-23 14:31:36,116: DEBUG/main] Retrieved datatype module galaxy.datatypes.binary:SQlite from the datatype registry for extension sqlite. [2024-02-23 14:31:36,116: DEBUG/main] Retrieved datatype module galaxy.datatypes.binary:MzSQlite from the datatype registry for extension mz.sqlite. [2024-02-23 14:31:36,116: DEBUG/main] Retrieved datatype module galaxy.datatypes.binary:OSW from the datatype registry for extension osw. [2024-02-23 14:31:36,116: DEBUG/main] Retrieved datatype module galaxy.datatypes.binary:PQP from the datatype registry for extension pqp. [2024-02-23 14:31:36,116: DEBUG/main] Retrieved datatype module galaxy.datatypes.proteomics:TraML from the datatype registry for extension traml. [2024-02-23 14:31:36,117: DEBUG/main] Retrieved datatype module galaxy.datatypes.proteomics:TrafoXML from the datatype registry for extension trafoxml. [2024-02-23 14:31:36,117: DEBUG/main] Retrieved datatype module galaxy.datatypes.proteomics:FeatureXML from the datatype registry for extension featurexml. [2024-02-23 14:31:36,117: DEBUG/main] Retrieved datatype module galaxy.datatypes.proteomics:ConsensusXML from the datatype registry for extension consensusxml. [2024-02-23 14:31:36,117: DEBUG/main] Retrieved datatype module galaxy.datatypes.proteomics:UniProtXML from the datatype registry for extension uniprotxml. [2024-02-23 14:31:36,117: DEBUG/main] Retrieved datatype module galaxy.datatypes.proteomics:XquestXML from the datatype registry for extension xquest.xml. [2024-02-23 14:31:36,117: DEBUG/main] Retrieved datatype module galaxy.datatypes.proteomics:XquestSpecXML from the datatype registry for extension spec.xml. [2024-02-23 14:31:36,117: DEBUG/main] Retrieved datatype module galaxy.datatypes.proteomics:QCML from the datatype registry for extension qcml. [2024-02-23 14:31:36,117: DEBUG/main] Retrieved datatype module galaxy.datatypes.text:Json from the datatype registry for extension mzqc. [2024-02-23 14:31:36,117: DEBUG/main] Retrieved datatype module galaxy.datatypes.proteomics:Msp from the datatype registry for extension msp. [2024-02-23 14:31:36,117: DEBUG/main] Retrieved datatype module galaxy.datatypes.proteomics:SPLibNoIndex from the datatype registry for extension splib_noindex. [2024-02-23 14:31:36,117: DEBUG/main] Retrieved datatype module galaxy.datatypes.proteomics:SPLib from the datatype registry for extension splib. [2024-02-23 14:31:36,117: DEBUG/main] Retrieved datatype module galaxy.datatypes.binary:BlibSQlite from the datatype registry for extension blib. [2024-02-23 14:31:36,117: DEBUG/main] Retrieved datatype module galaxy.datatypes.binary:DlibSQlite from the datatype registry for extension dlib. [2024-02-23 14:31:36,118: DEBUG/main] Retrieved datatype module galaxy.datatypes.binary:ElibSQlite from the datatype registry for extension elib. [2024-02-23 14:31:36,118: DEBUG/main] Retrieved datatype module galaxy.datatypes.proteomics:XHunterAslFormat from the datatype registry for extension hlf. [2024-02-23 14:31:36,118: DEBUG/main] Retrieved datatype module galaxy.datatypes.binary:IdpDB from the datatype registry for extension idpdb. [2024-02-23 14:31:36,118: DEBUG/main] Retrieved datatype module galaxy.datatypes.proteomics:Sf3 from the datatype registry for extension sf3. [2024-02-23 14:31:36,118: DEBUG/main] Retrieved datatype module galaxy.datatypes.binary:Binary from the datatype registry for extension cps. [2024-02-23 14:31:36,118: DEBUG/main] Retrieved datatype module galaxy.datatypes.tabular:ConnectivityTable from the datatype registry for extension ct. [2024-02-23 14:31:36,118: DEBUG/main] Retrieved datatype module galaxy.datatypes.binary:PostgresqlArchive from the datatype registry for extension postgresql. [2024-02-23 14:31:36,118: DEBUG/main] Retrieved datatype module galaxy.datatypes.binary:MongoDBArchive from the datatype registry for extension mongodb. [2024-02-23 14:31:36,118: DEBUG/main] Retrieved datatype module galaxy.datatypes.binary:GeneNoteBook from the datatype registry for extension genenotebook. [2024-02-23 14:31:36,118: DEBUG/main] Retrieved datatype module galaxy.datatypes.binary:SearchGuiArchive from the datatype registry for extension searchgui_archive. [2024-02-23 14:31:36,118: DEBUG/main] Retrieved datatype module galaxy.datatypes.binary:Fast5Archive from the datatype registry for extension fast5.tar. [2024-02-23 14:31:36,118: DEBUG/main] Retrieved datatype module galaxy.datatypes.binary:Fast5ArchiveGz from the datatype registry for extension fast5.tar.gz. [2024-02-23 14:31:36,118: DEBUG/main] Retrieved datatype module galaxy.datatypes.binary:Fast5ArchiveBz2 from the datatype registry for extension fast5.tar.bz2. [2024-02-23 14:31:36,119: DEBUG/main] Retrieved datatype module galaxy.datatypes.binary:CompressedArchive from the datatype registry for extension peptideshaker_archive. [2024-02-23 14:31:36,119: DEBUG/main] Retrieved datatype module galaxy.datatypes.tabular:Tabular from the datatype registry for extension percin. [2024-02-23 14:31:36,119: DEBUG/main] Retrieved datatype module galaxy.datatypes.xml:GenericXml from the datatype registry for extension percout. [2024-02-23 14:31:36,119: DEBUG/main] Retrieved datatype module galaxy.datatypes.tabular:Tabular from the datatype registry for extension hardklor. [2024-02-23 14:31:36,119: DEBUG/main] Retrieved datatype module galaxy.datatypes.tabular:Tabular from the datatype registry for extension kronik. [2024-02-23 14:31:36,119: DEBUG/main] Retrieved datatype module galaxy.datatypes.proteomics:ImzML from the datatype registry for extension imzml. [2024-02-23 14:31:36,119: DEBUG/main] Retrieved datatype module galaxy.datatypes.images:Analyze75 from the datatype registry for extension analyze75. [2024-02-23 14:31:36,119: DEBUG/main] Retrieved datatype module galaxy.datatypes.images:Nifti1 from the datatype registry for extension nii1. [2024-02-23 14:31:36,120: DEBUG/main] Retrieved datatype module galaxy.datatypes.images:Nifti2 from the datatype registry for extension nii2. [2024-02-23 14:31:36,120: DEBUG/main] Retrieved datatype module galaxy.datatypes.images:Gifti from the datatype registry for extension gii. [2024-02-23 14:31:36,120: DEBUG/main] Retrieved datatype module galaxy.datatypes.images:Tck from the datatype registry for extension tck. [2024-02-23 14:31:36,120: DEBUG/main] Retrieved datatype module galaxy.datatypes.images:Trk from the datatype registry for extension trk. [2024-02-23 14:31:36,120: DEBUG/main] Retrieved datatype module galaxy.datatypes.images:Mrc2014 from the datatype registry for extension mrc. [2024-02-23 14:31:36,120: DEBUG/main] Retrieved datatype module galaxy.datatypes.images:Star from the datatype registry for extension star. [2024-02-23 14:31:36,120: DEBUG/main] Retrieved datatype module galaxy.datatypes.proteomics:PEFF from the datatype registry for extension peff. [2024-02-23 14:31:36,120: DEBUG/main] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension toml. [2024-02-23 14:31:36,121: DEBUG/main] Retrieved datatype module galaxy.datatypes.flow:FCS from the datatype registry for extension fcs. [2024-02-23 14:31:36,121: DEBUG/main] Retrieved datatype module galaxy.datatypes.tabular:Tabular from the datatype registry for extension flowtext. [2024-02-23 14:31:36,121: DEBUG/main] Retrieved datatype module galaxy.datatypes.tabular:Tabular from the datatype registry for extension flowclr. [2024-02-23 14:31:36,122: DEBUG/main] Retrieved datatype module galaxy.datatypes.tabular:Tabular from the datatype registry for extension flowmfi. [2024-02-23 14:31:36,122: DEBUG/main] Retrieved datatype module galaxy.datatypes.tabular:Tabular from the datatype registry for extension flowstat1. [2024-02-23 14:31:36,122: DEBUG/main] Retrieved datatype module galaxy.datatypes.tabular:Tabular from the datatype registry for extension flowstat2. [2024-02-23 14:31:36,123: DEBUG/main] Retrieved datatype module galaxy.datatypes.tabular:Tabular from the datatype registry for extension flowstat3. [2024-02-23 14:31:36,123: DEBUG/main] Retrieved datatype module galaxy.datatypes.tabular:Tabular from the datatype registry for extension flowscore. [2024-02-23 14:31:36,123: DEBUG/main] Retrieved datatype module galaxy.datatypes.binary:RData from the datatype registry for extension flowframe. [2024-02-23 14:31:36,123: DEBUG/main] Retrieved datatype module galaxy.datatypes.binary:RData from the datatype registry for extension fsom. [2024-02-23 14:31:36,123: DEBUG/main] Retrieved datatype module galaxy.datatypes.binary:RData from the datatype registry for extension flowset. [2024-02-23 14:31:36,123: DEBUG/main] Retrieved datatype module galaxy.datatypes.tabular:Tabular from the datatype registry for extension metacyto_clr.txt. [2024-02-23 14:31:36,124: DEBUG/main] Retrieved datatype module galaxy.datatypes.metacyto:mSummary from the datatype registry for extension metacyto_summary.txt. [2024-02-23 14:31:36,124: DEBUG/main] Retrieved datatype module galaxy.datatypes.metacyto:mStats from the datatype registry for extension metacyto_stats.txt. [2024-02-23 14:31:36,124: DEBUG/main] Retrieved datatype module galaxy.datatypes.binary:CompressedArchive from the datatype registry for extension deeptools_compute_matrix_archive. [2024-02-23 14:31:36,124: DEBUG/main] Retrieved datatype module galaxy.datatypes.binary:CompressedArchive from the datatype registry for extension deeptools_coverage_matrix. [2024-02-23 14:31:36,124: DEBUG/main] Retrieved datatype module galaxy.datatypes.binary:NetCDF from the datatype registry for extension netcdf. [2024-02-23 14:31:36,124: DEBUG/main] Retrieved datatype module galaxy.datatypes.images:Eps from the datatype registry for extension eps. [2024-02-23 14:31:36,124: DEBUG/main] Retrieved datatype module galaxy.datatypes.images:Rast from the datatype registry for extension rast. [2024-02-23 14:31:36,124: DEBUG/main] Retrieved datatype module galaxy.datatypes.images:Laj from the datatype registry for extension laj. [2024-02-23 14:31:36,124: DEBUG/main] Retrieved datatype module galaxy.datatypes.sequence:Lav from the datatype registry for extension lav. [2024-02-23 14:31:36,124: DEBUG/main] Retrieved datatype module galaxy.datatypes.sequence:Maf from the datatype registry for extension maf. [2024-02-23 14:31:36,125: DEBUG/main] Retrieved datatype module galaxy.datatypes.sequence:MafCustomTrack from the datatype registry for extension mafcustomtrack. [2024-02-23 14:31:36,125: DEBUG/main] Retrieved datatype module galaxy.datatypes.tabular:MatrixMarket from the datatype registry for extension mtx. [2024-02-23 14:31:36,125: DEBUG/main] Retrieved datatype module galaxy.datatypes.tabular:CMAP from the datatype registry for extension cmap. [2024-02-23 14:31:36,125: DEBUG/main] Retrieved datatype module galaxy.datatypes.interval:ENCODEPeak from the datatype registry for extension encodepeak. [2024-02-23 14:31:36,125: DEBUG/main] Retrieved datatype module galaxy.datatypes.images:Pdf from the datatype registry for extension pdf. [2024-02-23 14:31:36,125: DEBUG/main] Retrieved datatype module galaxy.datatypes.tabular:Pileup from the datatype registry for extension pileup. [2024-02-23 14:31:36,125: DEBUG/main] Retrieved datatype module galaxy.datatypes.tabular:Psl from the datatype registry for extension psl. [2024-02-23 14:31:36,125: DEBUG/main] Retrieved datatype module galaxy.datatypes.text:Obo from the datatype registry for extension obo. [2024-02-23 14:31:36,125: DEBUG/main] Retrieved datatype module galaxy.datatypes.xml:Owl from the datatype registry for extension owl. [2024-02-23 14:31:36,125: DEBUG/main] Retrieved datatype module galaxy.datatypes.images:Png from the datatype registry for extension png. [2024-02-23 14:31:36,125: DEBUG/main] Retrieved datatype module galaxy.datatypes.qualityscore:QualityScore from the datatype registry for extension qual. [2024-02-23 14:31:36,125: DEBUG/main] Retrieved datatype module galaxy.datatypes.qualityscore:QualityScoreSolexa from the datatype registry for extension qualsolexa. [2024-02-23 14:31:36,126: DEBUG/main] Retrieved datatype module galaxy.datatypes.qualityscore:QualityScoreIllumina from the datatype registry for extension qualillumina. [2024-02-23 14:31:36,126: DEBUG/main] Retrieved datatype module galaxy.datatypes.qualityscore:QualityScoreSOLiD from the datatype registry for extension qualsolid. [2024-02-23 14:31:36,126: DEBUG/main] Retrieved datatype module galaxy.datatypes.qualityscore:QualityScore454 from the datatype registry for extension qual454. [2024-02-23 14:31:36,126: DEBUG/main] Retrieved datatype module galaxy.datatypes.assembly:Roadmaps from the datatype registry for extension roadmaps. [2024-02-23 14:31:36,126: DEBUG/main] Retrieved datatype module galaxy.datatypes.tabular:Sam from the datatype registry for extension sam. [2024-02-23 14:31:36,126: DEBUG/main] Retrieved datatype module galaxy.datatypes.binary:Scf from the datatype registry for extension scf. [2024-02-23 14:31:36,126: DEBUG/main] Retrieved datatype module galaxy.datatypes.assembly:Sequences from the datatype registry for extension sequences. [2024-02-23 14:31:36,126: DEBUG/main] Retrieved datatype module galaxy.datatypes.text:SnpEffDb from the datatype registry for extension snpeffdb. [2024-02-23 14:31:36,126: DEBUG/main] Retrieved datatype module galaxy.datatypes.text:SnpSiftDbNSFP from the datatype registry for extension snpsiftdbnsfp. [2024-02-23 14:31:36,126: DEBUG/main] Retrieved datatype module galaxy.datatypes.tabular:Tabular from the datatype registry for extension dbnsfp.tabular. [2024-02-23 14:31:36,126: DEBUG/main] Retrieved datatype module galaxy.datatypes.binary:Sff from the datatype registry for extension sff. [2024-02-23 14:31:36,127: DEBUG/main] Retrieved datatype module galaxy.datatypes.binary:Sra from the datatype registry for extension sra. [2024-02-23 14:31:36,127: DEBUG/main] Retrieved datatype module galaxy.datatypes.tabular:SraManifest from the datatype registry for extension sra_manifest.tabular. [2024-02-23 14:31:36,127: DEBUG/main] Retrieved datatype module galaxy.datatypes.xml:GenericXml from the datatype registry for extension svg. [2024-02-23 14:31:36,127: DEBUG/main] Retrieved datatype module galaxy.datatypes.tabular:Taxonomy from the datatype registry for extension taxonomy. [2024-02-23 14:31:36,127: DEBUG/main] Retrieved datatype module galaxy.datatypes.tabular:Tabular from the datatype registry for extension tabular. [2024-02-23 14:31:36,127: DEBUG/main] Retrieved datatype module galaxy.datatypes.binary:TwoBit from the datatype registry for extension twobit. [2024-02-23 14:31:36,127: DEBUG/main] Retrieved datatype module galaxy.datatypes.binary:SQmass from the datatype registry for extension sqmass. [2024-02-23 14:31:36,127: DEBUG/main] Retrieved datatype module galaxy.datatypes.binary:GeminiSQLite from the datatype registry for extension gemini.sqlite. [2024-02-23 14:31:36,127: DEBUG/main] Retrieved datatype module galaxy.datatypes.binary:ChiraSQLite from the datatype registry for extension chira.sqlite. [2024-02-23 14:31:36,127: DEBUG/main] Retrieved datatype module galaxy.datatypes.binary:CuffDiffSQlite from the datatype registry for extension cuffdiff.sqlite. [2024-02-23 14:31:36,128: DEBUG/main] Retrieved datatype module galaxy.datatypes.binary:GAFASQLite from the datatype registry for extension gafa.sqlite. [2024-02-23 14:31:36,128: DEBUG/main] Retrieved datatype module galaxy.datatypes.binary:NcbiTaxonomySQlite from the datatype registry for extension ncbitaxonomy.sqlite. [2024-02-23 14:31:36,128: DEBUG/main] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension txt. [2024-02-23 14:31:36,128: DEBUG/main] Retrieved datatype module galaxy.datatypes.data:LineCount from the datatype registry for extension linecount. [2024-02-23 14:31:36,128: DEBUG/main] Retrieved datatype module galaxy.datatypes.sequence:MemePsp from the datatype registry for extension memepsp. [2024-02-23 14:31:36,128: DEBUG/main] Retrieved datatype module galaxy.datatypes.xml:MEMEXml from the datatype registry for extension memexml. [2024-02-23 14:31:36,128: DEBUG/main] Retrieved datatype module galaxy.datatypes.xml:CisML from the datatype registry for extension cisml. [2024-02-23 14:31:36,128: DEBUG/main] Retrieved datatype module galaxy.datatypes.xml:GenericXml from the datatype registry for extension xml. [2024-02-23 14:31:36,128: DEBUG/main] Retrieved datatype module galaxy.datatypes.xml:GenericXml from the datatype registry for extension xsd. [2024-02-23 14:31:36,128: DEBUG/main] Retrieved datatype module galaxy.datatypes.xml:Dzi from the datatype registry for extension dzi. [2024-02-23 14:31:36,128: DEBUG/main] Retrieved datatype module galaxy.datatypes.tabular:Vcf from the datatype registry for extension vcf. [2024-02-23 14:31:36,128: DEBUG/main] Retrieved datatype module galaxy.datatypes.binary:Bcf from the datatype registry for extension bcf. [2024-02-23 14:31:36,129: DEBUG/main] Retrieved datatype module galaxy.datatypes.binary:Bcf from the datatype registry for extension bcf_bgzip. [2024-02-23 14:31:36,129: DEBUG/main] Retrieved datatype module galaxy.datatypes.binary:BcfUncompressed from the datatype registry for extension bcf_uncompressed. [2024-02-23 14:31:36,129: DEBUG/main] Retrieved datatype module galaxy.datatypes.assembly:Velvet from the datatype registry for extension velvet. [2024-02-23 14:31:36,129: DEBUG/main] Retrieved datatype module galaxy.datatypes.interval:Wiggle from the datatype registry for extension wig. [2024-02-23 14:31:36,129: DEBUG/main] Retrieved datatype module galaxy.datatypes.binary:Binary from the datatype registry for extension interval_index. [2024-02-23 14:31:36,129: DEBUG/main] Retrieved datatype module galaxy.datatypes.binary:Binary from the datatype registry for extension odgi. [2024-02-23 14:31:36,129: DEBUG/main] Retrieved datatype module galaxy.datatypes.binary:CompressedArchive from the datatype registry for extension vg. [2024-02-23 14:31:36,129: DEBUG/main] Retrieved datatype module galaxy.datatypes.binary:Binary from the datatype registry for extension xg. [2024-02-23 14:31:36,129: DEBUG/main] Retrieved datatype module galaxy.datatypes.binary:Binary from the datatype registry for extension protobuf2. [2024-02-23 14:31:36,130: DEBUG/main] Retrieved datatype module galaxy.datatypes.binary:Binary from the datatype registry for extension protobuf3. [2024-02-23 14:31:36,130: DEBUG/main] Retrieved datatype module galaxy.datatypes.binary:Binary from the datatype registry for extension onnx. [2024-02-23 14:31:36,130: DEBUG/main] Retrieved datatype module galaxy.datatypes.binary:Binary from the datatype registry for extension tabix. [2024-02-23 14:31:36,130: DEBUG/main] Retrieved datatype module galaxy.datatypes.interval:IntervalTabix from the datatype registry for extension interval_tabix.gz. [2024-02-23 14:31:36,130: DEBUG/main] Retrieved datatype module galaxy.datatypes.interval:JuicerMediumTabix from the datatype registry for extension juicer_medium_tabix.gz. [2024-02-23 14:31:36,130: DEBUG/main] Retrieved datatype module galaxy.datatypes.interval:BedTabix from the datatype registry for extension bed_tabix.gz. [2024-02-23 14:31:36,130: DEBUG/main] Retrieved datatype module galaxy.datatypes.interval:GffTabix from the datatype registry for extension gff_tabix.gz. [2024-02-23 14:31:36,130: DEBUG/main] Retrieved datatype module galaxy.datatypes.binary:Binary from the datatype registry for extension bgzip. [2024-02-23 14:31:36,130: DEBUG/main] Retrieved datatype module galaxy.datatypes.tabular:VcfGz from the datatype registry for extension vcf_bgzip. [2024-02-23 14:31:36,130: DEBUG/main] Retrieved datatype module galaxy.datatypes.binary:Binary from the datatype registry for extension bus. [2024-02-23 14:31:36,131: DEBUG/main] Retrieved datatype module galaxy.datatypes.binary:Binary from the datatype registry for extension kallisto.idx. [2024-02-23 14:31:36,131: DEBUG/main] Retrieved datatype module galaxy.datatypes.xml:Phyloxml from the datatype registry for extension phyloxml. [2024-02-23 14:31:36,131: DEBUG/main] Retrieved datatype module galaxy.datatypes.data:Newick from the datatype registry for extension newick. [2024-02-23 14:31:36,131: DEBUG/main] Retrieved datatype module galaxy.datatypes.data:Newick from the datatype registry for extension nhx. [2024-02-23 14:31:36,131: DEBUG/main] Retrieved datatype module galaxy.datatypes.data:Nexus from the datatype registry for extension nex. [2024-02-23 14:31:36,131: DEBUG/main] Retrieved datatype module galaxy.datatypes.text:IQTree from the datatype registry for extension iqtree. [2024-02-23 14:31:36,133: DEBUG/main] Retrieved datatype module galaxy.datatypes.mothur:SquareDistanceMatrix from the datatype registry for extension mldist. [2024-02-23 14:31:36,135: DEBUG/main] Retrieved datatype module galaxy.datatypes.genetics:Affybatch from the datatype registry for extension affybatch. [2024-02-23 14:31:36,135: DEBUG/main] Retrieved datatype module galaxy.datatypes.genetics:Eigenstratgeno from the datatype registry for extension eigenstratgeno. [2024-02-23 14:31:36,136: DEBUG/main] Retrieved datatype module galaxy.datatypes.genetics:Eigenstratpca from the datatype registry for extension eigenstratpca. [2024-02-23 14:31:36,136: DEBUG/main] Retrieved datatype module galaxy.datatypes.genetics:Eset from the datatype registry for extension eset. [2024-02-23 14:31:36,136: DEBUG/main] Retrieved datatype module galaxy.datatypes.genetics:Fped from the datatype registry for extension fped. [2024-02-23 14:31:36,136: DEBUG/main] Retrieved datatype module galaxy.datatypes.genetics:Fphe from the datatype registry for extension fphe. [2024-02-23 14:31:36,136: DEBUG/main] Retrieved datatype module galaxy.datatypes.genetics:GenomeGraphs from the datatype registry for extension gg. [2024-02-23 14:31:36,136: DEBUG/main] Retrieved datatype module galaxy.datatypes.genetics:ldIndep from the datatype registry for extension ldindep. [2024-02-23 14:31:36,136: DEBUG/main] Retrieved datatype module galaxy.datatypes.genetics:MAlist from the datatype registry for extension malist. [2024-02-23 14:31:36,136: DEBUG/main] Retrieved datatype module galaxy.datatypes.genetics:Lped from the datatype registry for extension lped. [2024-02-23 14:31:36,136: DEBUG/main] Retrieved datatype module galaxy.datatypes.genetics:Pbed from the datatype registry for extension pbed. [2024-02-23 14:31:36,136: DEBUG/main] Retrieved datatype module galaxy.datatypes.genetics:Pheno from the datatype registry for extension pheno. [2024-02-23 14:31:36,136: DEBUG/main] Retrieved datatype module galaxy.datatypes.genetics:Pphe from the datatype registry for extension pphe. [2024-02-23 14:31:36,137: DEBUG/main] Retrieved datatype module galaxy.datatypes.genetics:RexpBase from the datatype registry for extension rexpbase. [2024-02-23 14:31:36,137: DEBUG/main] Retrieved datatype module galaxy.datatypes.genetics:Rgenetics from the datatype registry for extension rgenetics. [2024-02-23 14:31:36,137: DEBUG/main] Retrieved datatype module galaxy.datatypes.genetics:Snptest from the datatype registry for extension snptest. [2024-02-23 14:31:36,137: DEBUG/main] Retrieved datatype module galaxy.datatypes.genetics:SNPMatrix from the datatype registry for extension snpmatrix. [2024-02-23 14:31:36,137: DEBUG/main] Retrieved datatype module galaxy.datatypes.binary:ExcelXls from the datatype registry for extension xls. [2024-02-23 14:31:36,137: DEBUG/main] Retrieved datatype module galaxy.datatypes.text:Ipynb from the datatype registry for extension ipynb. [2024-02-23 14:31:36,137: DEBUG/main] Retrieved datatype module galaxy.datatypes.text:Json from the datatype registry for extension json. [2024-02-23 14:31:36,137: DEBUG/main] Retrieved datatype module galaxy.datatypes.text:ExpressionJson from the datatype registry for extension expression.json. [2024-02-23 14:31:36,138: DEBUG/main] Retrieved datatype module galaxy.datatypes.graph:Xgmml from the datatype registry for extension xgmml. [2024-02-23 14:31:36,138: DEBUG/main] Retrieved datatype module galaxy.datatypes.graph:Sif from the datatype registry for extension sif. [2024-02-23 14:31:36,139: DEBUG/main] Retrieved datatype module galaxy.datatypes.triples:Triples from the datatype registry for extension triples. [2024-02-23 14:31:36,139: DEBUG/main] Retrieved datatype module galaxy.datatypes.triples:HDT from the datatype registry for extension hdt. [2024-02-23 14:31:36,140: DEBUG/main] Retrieved datatype module galaxy.datatypes.triples:NTriples from the datatype registry for extension nt. [2024-02-23 14:31:36,140: DEBUG/main] Retrieved datatype module galaxy.datatypes.triples:N3 from the datatype registry for extension n3. [2024-02-23 14:31:36,140: DEBUG/main] Retrieved datatype module galaxy.datatypes.triples:Turtle from the datatype registry for extension ttl. [2024-02-23 14:31:36,140: DEBUG/main] Retrieved datatype module galaxy.datatypes.triples:Rdf from the datatype registry for extension rdf. [2024-02-23 14:31:36,140: DEBUG/main] Retrieved datatype module galaxy.datatypes.triples:Jsonld from the datatype registry for extension jsonld. [2024-02-23 14:31:36,140: DEBUG/main] Retrieved datatype module galaxy.datatypes.binary:ExcelXls from the datatype registry for extension excel.xls. [2024-02-23 14:31:36,140: DEBUG/main] Retrieved datatype module galaxy.datatypes.binary:Xlsx from the datatype registry for extension xlsx. [2024-02-23 14:31:36,140: DEBUG/main] Retrieved datatype module galaxy.datatypes.binary:Binary from the datatype registry for extension docx. [2024-02-23 14:31:36,140: DEBUG/main] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension btwisted. [2024-02-23 14:31:36,140: DEBUG/main] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension cai. [2024-02-23 14:31:36,140: DEBUG/main] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension cat_db. [2024-02-23 14:31:36,140: DEBUG/main] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension charge. [2024-02-23 14:31:36,141: DEBUG/main] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension checktrans. [2024-02-23 14:31:36,141: DEBUG/main] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension chips. [2024-02-23 14:31:36,141: DEBUG/main] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension codcmp. [2024-02-23 14:31:36,141: DEBUG/main] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension coderet. [2024-02-23 14:31:36,141: DEBUG/main] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension compseq. [2024-02-23 14:31:36,141: DEBUG/main] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension cpgplot. [2024-02-23 14:31:36,141: DEBUG/main] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension cpgreport. [2024-02-23 14:31:36,141: DEBUG/main] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension cusp. [2024-02-23 14:31:36,141: DEBUG/main] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension cut. [2024-02-23 14:31:36,141: DEBUG/main] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension dan. [2024-02-23 14:31:36,141: DEBUG/main] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension digest. [2024-02-23 14:31:36,142: DEBUG/main] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension dreg. [2024-02-23 14:31:36,142: DEBUG/main] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension einverted. [2024-02-23 14:31:36,142: DEBUG/main] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension epestfind. [2024-02-23 14:31:36,142: DEBUG/main] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension equicktandem. [2024-02-23 14:31:36,142: DEBUG/main] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension est2genome. [2024-02-23 14:31:36,142: DEBUG/main] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension etandem. [2024-02-23 14:31:36,142: DEBUG/main] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension freak. [2024-02-23 14:31:36,142: DEBUG/main] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension fuzznuc. [2024-02-23 14:31:36,142: DEBUG/main] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension fuzzpro. [2024-02-23 14:31:36,142: DEBUG/main] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension fuzztran. [2024-02-23 14:31:36,142: DEBUG/main] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension garnier. [2024-02-23 14:31:36,143: DEBUG/main] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension geecee. [2024-02-23 14:31:36,143: DEBUG/main] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension helixturnhelix. [2024-02-23 14:31:36,143: DEBUG/main] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension hmoment. [2024-02-23 14:31:36,143: DEBUG/main] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension isochore. [2024-02-23 14:31:36,143: DEBUG/main] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension match. [2024-02-23 14:31:36,143: DEBUG/main] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension nametable. [2024-02-23 14:31:36,143: DEBUG/main] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension needle. [2024-02-23 14:31:36,143: DEBUG/main] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension newcpgreport. [2024-02-23 14:31:36,143: DEBUG/main] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension newcpgseek. [2024-02-23 14:31:36,143: DEBUG/main] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension noreturn. [2024-02-23 14:31:36,144: DEBUG/main] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension palindrome. [2024-02-23 14:31:36,144: DEBUG/main] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension pepcoil. [2024-02-23 14:31:36,144: DEBUG/main] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension pepinfo. [2024-02-23 14:31:36,144: DEBUG/main] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension pepstats. [2024-02-23 14:31:36,144: DEBUG/main] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension polydot. [2024-02-23 14:31:36,144: DEBUG/main] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension preg. [2024-02-23 14:31:36,144: DEBUG/main] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension prettyseq. [2024-02-23 14:31:36,144: DEBUG/main] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension primersearch. [2024-02-23 14:31:36,144: DEBUG/main] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension showfeat. [2024-02-23 14:31:36,144: DEBUG/main] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension showorf. [2024-02-23 14:31:36,144: DEBUG/main] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension sixpack. [2024-02-23 14:31:36,145: DEBUG/main] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension strider. [2024-02-23 14:31:36,145: DEBUG/main] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension supermatcher. [2024-02-23 14:31:36,145: DEBUG/main] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension syco. [2024-02-23 14:31:36,145: DEBUG/main] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension textsearch. [2024-02-23 14:31:36,145: DEBUG/main] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension vectorstrip. [2024-02-23 14:31:36,145: DEBUG/main] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension wobble. [2024-02-23 14:31:36,145: DEBUG/main] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension wordcount. [2024-02-23 14:31:36,145: DEBUG/main] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension dbmotif. [2024-02-23 14:31:36,145: DEBUG/main] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension diffseq. [2024-02-23 14:31:36,145: DEBUG/main] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension excel. [2024-02-23 14:31:36,145: DEBUG/main] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension feattable. [2024-02-23 14:31:36,146: DEBUG/main] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension motif. [2024-02-23 14:31:36,146: DEBUG/main] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension regions. [2024-02-23 14:31:36,146: DEBUG/main] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension seqtable. [2024-02-23 14:31:36,146: DEBUG/main] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension simple. [2024-02-23 14:31:36,146: DEBUG/main] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension table. [2024-02-23 14:31:36,146: DEBUG/main] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension tagseq. [2024-02-23 14:31:36,146: DEBUG/main] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension acedb. [2024-02-23 14:31:36,146: DEBUG/main] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension clustal. [2024-02-23 14:31:36,146: DEBUG/main] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension codata. [2024-02-23 14:31:36,146: DEBUG/main] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension embl. [2024-02-23 14:31:36,146: DEBUG/main] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension fitch. [2024-02-23 14:31:36,147: DEBUG/main] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension gcg. [2024-02-23 14:31:36,147: DEBUG/main] Retrieved datatype module galaxy.datatypes.sequence:Genbank from the datatype registry for extension genbank. [2024-02-23 14:31:36,147: DEBUG/main] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension hennig86. [2024-02-23 14:31:36,147: DEBUG/main] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension ig. [2024-02-23 14:31:36,147: DEBUG/main] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension jackknifer. [2024-02-23 14:31:36,147: DEBUG/main] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension jackknifernon. [2024-02-23 14:31:36,147: DEBUG/main] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension mega. [2024-02-23 14:31:36,147: DEBUG/main] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension meganon. [2024-02-23 14:31:36,147: DEBUG/main] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension ncbi. [2024-02-23 14:31:36,148: DEBUG/main] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension nexus. [2024-02-23 14:31:36,148: DEBUG/main] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension nexusnon. [2024-02-23 14:31:36,148: DEBUG/main] Retrieved datatype module galaxy.datatypes.phylip:Phylip from the datatype registry for extension phylip. [2024-02-23 14:31:36,148: DEBUG/main] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension phylipnon. [2024-02-23 14:31:36,148: DEBUG/main] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension pir. [2024-02-23 14:31:36,148: DEBUG/main] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension staden. [2024-02-23 14:31:36,149: DEBUG/main] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension swiss. [2024-02-23 14:31:36,150: DEBUG/main] Retrieved datatype module galaxy.datatypes.msa:Msf from the datatype registry for extension msf. [2024-02-23 14:31:36,150: DEBUG/main] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension markx0. [2024-02-23 14:31:36,150: DEBUG/main] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension markx1. [2024-02-23 14:31:36,150: DEBUG/main] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension markx10. [2024-02-23 14:31:36,150: DEBUG/main] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension markx2. [2024-02-23 14:31:36,150: DEBUG/main] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension markx3. [2024-02-23 14:31:36,150: DEBUG/main] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension pair. [2024-02-23 14:31:36,150: DEBUG/main] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension score. [2024-02-23 14:31:36,150: DEBUG/main] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension srs. [2024-02-23 14:31:36,151: DEBUG/main] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension srspair. [2024-02-23 14:31:36,151: DEBUG/main] Retrieved datatype module galaxy.datatypes.annotation:SnapHmm from the datatype registry for extension snaphmm. [2024-02-23 14:31:36,151: DEBUG/main] Retrieved datatype module galaxy.datatypes.annotation:Augustus from the datatype registry for extension augustus. [2024-02-23 14:31:36,151: DEBUG/main] Retrieved datatype module galaxy.datatypes.binary:ICM from the datatype registry for extension icm. [2024-02-23 14:31:36,151: DEBUG/main] Retrieved datatype module galaxy.datatypes.msa:InfernalCM from the datatype registry for extension cm. [2024-02-23 14:31:36,151: DEBUG/main] Retrieved datatype module galaxy.datatypes.msa:Hmmer2 from the datatype registry for extension hmm2. [2024-02-23 14:31:36,151: DEBUG/main] Retrieved datatype module galaxy.datatypes.msa:Hmmer3 from the datatype registry for extension hmm3. [2024-02-23 14:31:36,151: DEBUG/main] Retrieved datatype module galaxy.datatypes.msa:Stockholm_1_0 from the datatype registry for extension stockholm. [2024-02-23 14:31:36,152: DEBUG/main] Retrieved datatype module galaxy.datatypes.msa:MauveXmfa from the datatype registry for extension xmfa. [2024-02-23 14:31:36,152: DEBUG/main] Retrieved datatype module galaxy.datatypes.microarrays:Cel from the datatype registry for extension cel. [2024-02-23 14:31:36,152: DEBUG/main] Retrieved datatype module galaxy.datatypes.microarrays:Gpr from the datatype registry for extension gpr. [2024-02-23 14:31:36,152: DEBUG/main] Retrieved datatype module galaxy.datatypes.microarrays:Gal from the datatype registry for extension gal. [2024-02-23 14:31:36,152: DEBUG/main] Retrieved datatype module galaxy.datatypes.binary:RDS from the datatype registry for extension rds. [2024-02-23 14:31:36,153: DEBUG/main] Retrieved datatype module galaxy.datatypes.binary:RDS from the datatype registry for extension phyloseq. [2024-02-23 14:31:36,153: DEBUG/main] Retrieved datatype module galaxy.datatypes.binary:RData from the datatype registry for extension rdata. [2024-02-23 14:31:36,153: DEBUG/main] Retrieved datatype module galaxy.datatypes.binary:RData from the datatype registry for extension rdata.sce. [2024-02-23 14:31:36,153: DEBUG/main] Retrieved datatype module galaxy.datatypes.binary:RData from the datatype registry for extension rdata.xcms.raw. [2024-02-23 14:31:36,153: DEBUG/main] Retrieved datatype module galaxy.datatypes.binary:RData from the datatype registry for extension rdata.msnbase.raw. [2024-02-23 14:31:36,153: DEBUG/main] Retrieved datatype module galaxy.datatypes.binary:RData from the datatype registry for extension rdata.xcms.findchrompeaks. [2024-02-23 14:31:36,153: DEBUG/main] Retrieved datatype module galaxy.datatypes.binary:RData from the datatype registry for extension rdata.xcms.group. [2024-02-23 14:31:36,153: DEBUG/main] Retrieved datatype module galaxy.datatypes.binary:RData from the datatype registry for extension rdata.xcms.retcor. [2024-02-23 14:31:36,153: DEBUG/main] Retrieved datatype module galaxy.datatypes.binary:RData from the datatype registry for extension rdata.xcms.fillpeaks. [2024-02-23 14:31:36,153: DEBUG/main] Retrieved datatype module galaxy.datatypes.binary:RData from the datatype registry for extension rdata.camera.positive. [2024-02-23 14:31:36,154: DEBUG/main] Retrieved datatype module galaxy.datatypes.binary:RData from the datatype registry for extension rdata.camera.negative. [2024-02-23 14:31:36,154: DEBUG/main] Retrieved datatype module galaxy.datatypes.binary:RData from the datatype registry for extension rdata.camera.quick. [2024-02-23 14:31:36,154: DEBUG/main] Retrieved datatype module galaxy.datatypes.hdf5:HDF5SummarizedExperiment from the datatype registry for extension rdata.se. [2024-02-23 14:31:36,154: DEBUG/main] Retrieved datatype module galaxy.datatypes.binary:Binary from the datatype registry for extension rdock_as. [2024-02-23 14:31:36,154: DEBUG/main] Retrieved datatype module galaxy.datatypes.binary:OxliCountGraph from the datatype registry for extension oxlicg. [2024-02-23 14:31:36,154: DEBUG/main] Retrieved datatype module galaxy.datatypes.binary:OxliNodeGraph from the datatype registry for extension oxling. [2024-02-23 14:31:36,154: DEBUG/main] Retrieved datatype module galaxy.datatypes.binary:OxliTagSet from the datatype registry for extension oxlits. [2024-02-23 14:31:36,155: DEBUG/main] Retrieved datatype module galaxy.datatypes.binary:OxliStopTags from the datatype registry for extension oxlist. [2024-02-23 14:31:36,155: DEBUG/main] Retrieved datatype module galaxy.datatypes.binary:OxliSubset from the datatype registry for extension oxliss. [2024-02-23 14:31:36,155: DEBUG/main] Retrieved datatype module galaxy.datatypes.binary:OxliGraphLabels from the datatype registry for extension oxligl. [2024-02-23 14:31:36,156: DEBUG/main] Retrieved datatype module galaxy.datatypes.constructive_solid_geometry:STL from the datatype registry for extension stl. [2024-02-23 14:31:36,156: DEBUG/main] Retrieved datatype module galaxy.datatypes.constructive_solid_geometry:PlyAscii from the datatype registry for extension plyascii. [2024-02-23 14:31:36,156: DEBUG/main] Retrieved datatype module galaxy.datatypes.constructive_solid_geometry:PlyBinary from the datatype registry for extension plybinary. [2024-02-23 14:31:36,156: DEBUG/main] Retrieved datatype module galaxy.datatypes.constructive_solid_geometry:VtkAscii from the datatype registry for extension vtkascii. [2024-02-23 14:31:36,156: DEBUG/main] Retrieved datatype module galaxy.datatypes.constructive_solid_geometry:VtkBinary from the datatype registry for extension vtkbinary. [2024-02-23 14:31:36,157: DEBUG/main] Retrieved datatype module galaxy.datatypes.text:Biom1 from the datatype registry for extension biom1. [2024-02-23 14:31:36,157: DEBUG/main] Retrieved datatype module galaxy.datatypes.binary:Biom2 from the datatype registry for extension biom2. [2024-02-23 14:31:36,157: DEBUG/main] Retrieved datatype module galaxy.datatypes.binary:MashSketch from the datatype registry for extension msh. [2024-02-23 14:31:36,157: DEBUG/main] Retrieved datatype module galaxy.datatypes.interval:ScIdx from the datatype registry for extension scidx. [2024-02-23 14:31:36,164: DEBUG/main] Retrieved datatype module galaxy.datatypes.molecules:SMILES from the datatype registry for extension smi. [2024-02-23 14:31:36,165: DEBUG/main] Retrieved datatype module galaxy.datatypes.molecules:SDF from the datatype registry for extension sdf. [2024-02-23 14:31:36,165: DEBUG/main] Retrieved datatype module galaxy.datatypes.molecules:InChI from the datatype registry for extension inchi. [2024-02-23 14:31:36,165: DEBUG/main] Retrieved datatype module galaxy.datatypes.molecules:MOL from the datatype registry for extension mol. [2024-02-23 14:31:36,165: DEBUG/main] Retrieved datatype module galaxy.datatypes.molecules:MOL2 from the datatype registry for extension mol2. [2024-02-23 14:31:36,165: DEBUG/main] Retrieved datatype module galaxy.datatypes.molecules:CML from the datatype registry for extension cml. [2024-02-23 14:31:36,165: DEBUG/main] Retrieved datatype module galaxy.datatypes.molecules:FPS from the datatype registry for extension fps. [2024-02-23 14:31:36,166: DEBUG/main] Retrieved datatype module galaxy.datatypes.molecules:OBFS from the datatype registry for extension obfs. [2024-02-23 14:31:36,166: DEBUG/main] Retrieved datatype module galaxy.datatypes.molecules:DRF from the datatype registry for extension drf. [2024-02-23 14:31:36,166: DEBUG/main] Retrieved datatype module galaxy.datatypes.molecules:PHAR from the datatype registry for extension phar. [2024-02-23 14:31:36,166: DEBUG/main] Retrieved datatype module galaxy.datatypes.molecules:PDB from the datatype registry for extension pdb. [2024-02-23 14:31:36,166: DEBUG/main] Retrieved datatype module galaxy.datatypes.molecules:PDBQT from the datatype registry for extension pdbqt. [2024-02-23 14:31:36,166: DEBUG/main] Retrieved datatype module galaxy.datatypes.molecules:PQR from the datatype registry for extension pqr. [2024-02-23 14:31:36,166: DEBUG/main] Retrieved datatype module galaxy.datatypes.molecules:Cell from the datatype registry for extension cell. [2024-02-23 14:31:36,166: DEBUG/main] Retrieved datatype module galaxy.datatypes.molecules:CIF from the datatype registry for extension cif. [2024-02-23 14:31:36,166: DEBUG/main] Retrieved datatype module galaxy.datatypes.molecules:XYZ from the datatype registry for extension xyz. [2024-02-23 14:31:36,166: DEBUG/main] Retrieved datatype module galaxy.datatypes.molecules:ExtendedXYZ from the datatype registry for extension extxyz. [2024-02-23 14:31:36,166: DEBUG/main] Retrieved datatype module galaxy.datatypes.binary:Trr from the datatype registry for extension trr. [2024-02-23 14:31:36,167: DEBUG/main] Retrieved datatype module galaxy.datatypes.binary:Dcd from the datatype registry for extension dcd. [2024-02-23 14:31:36,167: DEBUG/main] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension top. [2024-02-23 14:31:36,167: DEBUG/main] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension prmtop. [2024-02-23 14:31:36,167: DEBUG/main] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension itp. [2024-02-23 14:31:36,167: DEBUG/main] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension mdp. [2024-02-23 14:31:36,167: DEBUG/main] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension ndx. [2024-02-23 14:31:36,167: DEBUG/main] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension xvg. [2024-02-23 14:31:36,167: DEBUG/main] Retrieved datatype module galaxy.datatypes.binary:Xtc from the datatype registry for extension xtc. [2024-02-23 14:31:36,167: DEBUG/main] Retrieved datatype module galaxy.datatypes.binary:Cpt from the datatype registry for extension cpt. [2024-02-23 14:31:36,168: DEBUG/main] Retrieved datatype module galaxy.datatypes.binary:Edr from the datatype registry for extension edr. [2024-02-23 14:31:36,168: DEBUG/main] Retrieved datatype module galaxy.datatypes.binary:Binary from the datatype registry for extension tpr. [2024-02-23 14:31:36,168: DEBUG/main] Retrieved datatype module galaxy.datatypes.molecules:GRO from the datatype registry for extension gro. [2024-02-23 14:31:36,168: DEBUG/main] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension inpcrd. [2024-02-23 14:31:36,168: DEBUG/main] Retrieved datatype module galaxy.datatypes.binary:Vel from the datatype registry for extension vel. [2024-02-23 14:31:36,168: DEBUG/main] Retrieved datatype module galaxy.datatypes.molecules:grd from the datatype registry for extension grd. [2024-02-23 14:31:36,168: DEBUG/main] Retrieved datatype module galaxy.datatypes.molecules:grdtgz from the datatype registry for extension grd.tgz. [2024-02-23 14:31:36,168: DEBUG/main] Retrieved datatype module galaxy.datatypes.mothur:Otu from the datatype registry for extension mothur.otu. [2024-02-23 14:31:36,168: DEBUG/main] Retrieved datatype module galaxy.datatypes.mothur:Otu from the datatype registry for extension mothur.list. [2024-02-23 14:31:36,169: DEBUG/main] Retrieved datatype module galaxy.datatypes.mothur:Sabund from the datatype registry for extension mothur.sabund. [2024-02-23 14:31:36,169: DEBUG/main] Retrieved datatype module galaxy.datatypes.mothur:Sabund from the datatype registry for extension mothur.rabund. [2024-02-23 14:31:36,169: DEBUG/main] Retrieved datatype module galaxy.datatypes.mothur:GroupAbund from the datatype registry for extension mothur.shared. [2024-02-23 14:31:36,169: DEBUG/main] Retrieved datatype module galaxy.datatypes.mothur:GroupAbund from the datatype registry for extension mothur.relabund. [2024-02-23 14:31:36,169: DEBUG/main] Retrieved datatype module galaxy.datatypes.mothur:Names from the datatype registry for extension mothur.names. [2024-02-23 14:31:36,169: DEBUG/main] Retrieved datatype module galaxy.datatypes.mothur:Group from the datatype registry for extension mothur.design. [2024-02-23 14:31:36,169: DEBUG/main] Retrieved datatype module galaxy.datatypes.mothur:Summary from the datatype registry for extension mothur.summary. [2024-02-23 14:31:36,169: DEBUG/main] Retrieved datatype module galaxy.datatypes.mothur:Group from the datatype registry for extension mothur.groups. [2024-02-23 14:31:36,169: DEBUG/main] Retrieved datatype module galaxy.datatypes.mothur:Oligos from the datatype registry for extension mothur.oligos. [2024-02-23 14:31:36,170: DEBUG/main] Retrieved datatype module galaxy.datatypes.sequence:Fasta from the datatype registry for extension mothur.align. [2024-02-23 14:31:36,170: DEBUG/main] Retrieved datatype module galaxy.datatypes.mothur:AccNos from the datatype registry for extension mothur.accnos. [2024-02-23 14:31:36,170: DEBUG/main] Retrieved datatype module galaxy.datatypes.mothur:AccNos from the datatype registry for extension mothur.otulabels. [2024-02-23 14:31:36,170: DEBUG/main] Retrieved datatype module galaxy.datatypes.tabular:Tabular from the datatype registry for extension mothur.otu.corr. [2024-02-23 14:31:36,170: DEBUG/main] Retrieved datatype module galaxy.datatypes.mothur:SecondaryStructureMap from the datatype registry for extension mothur.map. [2024-02-23 14:31:36,170: DEBUG/main] Retrieved datatype module galaxy.datatypes.mothur:AlignCheck from the datatype registry for extension mothur.align.check. [2024-02-23 14:31:36,170: DEBUG/main] Retrieved datatype module galaxy.datatypes.mothur:AlignReport from the datatype registry for extension mothur.align.report. [2024-02-23 14:31:36,170: DEBUG/main] Retrieved datatype module galaxy.datatypes.mothur:LaneMask from the datatype registry for extension mothur.filter. [2024-02-23 14:31:36,170: DEBUG/main] Retrieved datatype module galaxy.datatypes.mothur:DistanceMatrix from the datatype registry for extension mothur.dist. [2024-02-23 14:31:36,170: DEBUG/main] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension mothur.tre. [2024-02-23 14:31:36,171: DEBUG/main] Retrieved datatype module galaxy.datatypes.mothur:PairwiseDistanceMatrix from the datatype registry for extension mothur.pair.dist. [2024-02-23 14:31:36,171: DEBUG/main] Retrieved datatype module galaxy.datatypes.mothur:SquareDistanceMatrix from the datatype registry for extension mothur.square.dist. [2024-02-23 14:31:36,171: DEBUG/main] Retrieved datatype module galaxy.datatypes.mothur:LowerTriangleDistanceMatrix from the datatype registry for extension mothur.lower.dist. [2024-02-23 14:31:36,171: DEBUG/main] Retrieved datatype module galaxy.datatypes.mothur:RefTaxonomy from the datatype registry for extension mothur.ref.taxonomy. [2024-02-23 14:31:36,171: DEBUG/main] Retrieved datatype module galaxy.datatypes.mothur:RefTaxonomy from the datatype registry for extension mothur.seq.taxonomy. [2024-02-23 14:31:36,171: DEBUG/main] Retrieved datatype module galaxy.datatypes.mothur:RefTaxonomy from the datatype registry for extension mothur.rdp.taxonomy. [2024-02-23 14:31:36,171: DEBUG/main] Retrieved datatype module galaxy.datatypes.mothur:ConsensusTaxonomy from the datatype registry for extension mothur.cons.taxonomy. [2024-02-23 14:31:36,171: DEBUG/main] Retrieved datatype module galaxy.datatypes.mothur:TaxonomySummary from the datatype registry for extension mothur.tax.summary. [2024-02-23 14:31:36,171: DEBUG/main] Retrieved datatype module galaxy.datatypes.mothur:Frequency from the datatype registry for extension mothur.freq. [2024-02-23 14:31:36,171: DEBUG/main] Retrieved datatype module galaxy.datatypes.mothur:Quantile from the datatype registry for extension mothur.quan. [2024-02-23 14:31:36,172: DEBUG/main] Retrieved datatype module galaxy.datatypes.mothur:Quantile from the datatype registry for extension mothur.filtered.quan. [2024-02-23 14:31:36,172: DEBUG/main] Retrieved datatype module galaxy.datatypes.mothur:Quantile from the datatype registry for extension mothur.masked.quan. [2024-02-23 14:31:36,172: DEBUG/main] Retrieved datatype module galaxy.datatypes.mothur:Quantile from the datatype registry for extension mothur.filtered.masked.quan. [2024-02-23 14:31:36,172: DEBUG/main] Retrieved datatype module galaxy.datatypes.mothur:Axes from the datatype registry for extension mothur.axes. [2024-02-23 14:31:36,172: DEBUG/main] Retrieved datatype module galaxy.datatypes.mothur:SffFlow from the datatype registry for extension mothur.sff.flow. [2024-02-23 14:31:36,172: DEBUG/main] Retrieved datatype module galaxy.datatypes.mothur:CountTable from the datatype registry for extension mothur.count_table. [2024-02-23 14:31:36,174: DEBUG/main] Retrieved datatype module galaxy.datatypes.neo4j:Neo4jDB from the datatype registry for extension neostore. [2024-02-23 14:31:36,174: DEBUG/main] Retrieved datatype module galaxy.datatypes.neo4j:Neo4jDBzip from the datatype registry for extension neostore.zip. [2024-02-23 14:31:36,175: DEBUG/main] Retrieved datatype module galaxy.datatypes.tracks:UCSCTrackHub from the datatype registry for extension trackhub. [2024-02-23 14:31:36,175: DEBUG/main] Retrieved datatype module galaxy.datatypes.blast:BlastXml from the datatype registry for extension blastxml. [2024-02-23 14:31:36,176: DEBUG/main] Retrieved datatype module galaxy.datatypes.blast:BlastNucDb from the datatype registry for extension blastdbn. [2024-02-23 14:31:36,176: DEBUG/main] Retrieved datatype module galaxy.datatypes.blast:BlastProtDb from the datatype registry for extension blastdbp. [2024-02-23 14:31:36,176: DEBUG/main] Retrieved datatype module galaxy.datatypes.blast:BlastDomainDb from the datatype registry for extension blastdbd. [2024-02-23 14:31:36,176: DEBUG/main] Retrieved datatype module galaxy.datatypes.blast:LastDb from the datatype registry for extension lastdb. [2024-02-23 14:31:36,176: DEBUG/main] Retrieved datatype module galaxy.datatypes.blast:BlastNucDb5 from the datatype registry for extension blastdbn5. [2024-02-23 14:31:36,176: DEBUG/main] Retrieved datatype module galaxy.datatypes.blast:BlastProtDb5 from the datatype registry for extension blastdbp5. [2024-02-23 14:31:36,176: DEBUG/main] Retrieved datatype module galaxy.datatypes.blast:BlastDomainDb5 from the datatype registry for extension blastdbd5. [2024-02-23 14:31:36,176: DEBUG/main] Retrieved datatype module galaxy.datatypes.data:GenericAsn1 from the datatype registry for extension maskinfo-asn1. [2024-02-23 14:31:36,177: DEBUG/main] Retrieved datatype module galaxy.datatypes.binary:GenericAsn1Binary from the datatype registry for extension maskinfo-asn1-binary. [2024-02-23 14:31:36,177: DEBUG/main] Retrieved datatype module galaxy.datatypes.data:GenericAsn1 from the datatype registry for extension pssm-asn1. [2024-02-23 14:31:36,177: DEBUG/main] Retrieved datatype module galaxy.datatypes.plant_tribes:PlantTribesKsComponents from the datatype registry for extension ptkscmp. [2024-02-23 14:31:36,177: DEBUG/main] Retrieved datatype module galaxy.datatypes.plant_tribes:Smat from the datatype registry for extension smat. [2024-02-23 14:31:36,177: DEBUG/main] Retrieved datatype module galaxy.datatypes.genetics:GenotypeMatrix from the datatype registry for extension alohomora_gts. [2024-02-23 14:31:36,178: DEBUG/main] Retrieved datatype module galaxy.datatypes.tabular:Tabular from the datatype registry for extension alohomora_map. [2024-02-23 14:31:36,178: DEBUG/main] Retrieved datatype module galaxy.datatypes.tabular:Tabular from the datatype registry for extension alohomora_maf. [2024-02-23 14:31:36,178: DEBUG/main] Retrieved datatype module galaxy.datatypes.tabular:Tabular from the datatype registry for extension alohomora_ped. [2024-02-23 14:31:36,178: DEBUG/main] Retrieved datatype module galaxy.datatypes.tabular:Tabular from the datatype registry for extension linkage_pedin. [2024-02-23 14:31:36,178: DEBUG/main] Retrieved datatype module galaxy.datatypes.genetics:DataIn from the datatype registry for extension linkage_datain. [2024-02-23 14:31:36,178: DEBUG/main] Retrieved datatype module galaxy.datatypes.genetics:MarkerMap from the datatype registry for extension linkage_map. [2024-02-23 14:31:36,178: DEBUG/main] Retrieved datatype module galaxy.datatypes.tabular:Tabular from the datatype registry for extension allegro_ihaplo. [2024-02-23 14:31:36,178: DEBUG/main] Retrieved datatype module galaxy.datatypes.tabular:Tabular from the datatype registry for extension allegro_descent. [2024-02-23 14:31:36,179: DEBUG/main] Retrieved datatype module galaxy.datatypes.genetics:AllegroLOD from the datatype registry for extension allegro_fparam. [2024-02-23 14:31:36,179: DEBUG/main] Retrieved datatype module galaxy.datatypes.genetics:IdeasPre from the datatype registry for extension ideaspre. [2024-02-23 14:31:36,179: DEBUG/main] Retrieved datatype module galaxy.datatypes.xml:Sbml from the datatype registry for extension sbml. [2024-02-23 14:31:36,179: DEBUG/main] Retrieved datatype module galaxy.datatypes.spaln:SpalnNuclDb from the datatype registry for extension spalndbnp. [2024-02-23 14:31:36,179: DEBUG/main] Retrieved datatype module galaxy.datatypes.spaln:SpalnProtDb from the datatype registry for extension spalndba. [2024-02-23 14:31:36,180: DEBUG/main] Retrieved datatype module galaxy.datatypes.binary:RDS from the datatype registry for extension dada2_dada. [2024-02-23 14:31:36,180: DEBUG/main] Retrieved datatype module galaxy.datatypes.binary:RDS from the datatype registry for extension dada2_errorrates. [2024-02-23 14:31:36,180: DEBUG/main] Retrieved datatype module galaxy.datatypes.binary:RDS from the datatype registry for extension dada2_mergepairs. [2024-02-23 14:31:36,180: DEBUG/main] Retrieved datatype module galaxy.datatypes.tabular:Tabular from the datatype registry for extension dada2_sequencetable. [2024-02-23 14:31:36,180: DEBUG/main] Retrieved datatype module galaxy.datatypes.tabular:Tabular from the datatype registry for extension dada2_uniques. [2024-02-23 14:31:36,180: DEBUG/main] Retrieved datatype module galaxy.datatypes.binary:RDS from the datatype registry for extension ampvis2. [2024-02-23 14:31:36,180: DEBUG/main] Retrieved datatype module galaxy.datatypes.binary:Binary from the datatype registry for extension ckpt. [2024-02-23 14:31:36,180: DEBUG/main] Retrieved datatype module galaxy.datatypes.binary:Binary from the datatype registry for extension tgz. [2024-02-23 14:31:36,192: DEBUG/main] Retrieved datatype module galaxy.datatypes.media:Wav from the datatype registry for extension wav. [2024-02-23 14:31:36,192: DEBUG/main] Retrieved datatype module galaxy.datatypes.media:Mp3 from the datatype registry for extension mp3. [2024-02-23 14:31:36,193: DEBUG/main] Retrieved datatype module galaxy.datatypes.media:Mkv from the datatype registry for extension mkv. [2024-02-23 14:31:36,193: DEBUG/main] Retrieved datatype module galaxy.datatypes.media:Mp4 from the datatype registry for extension mp4. [2024-02-23 14:31:36,193: DEBUG/main] Retrieved datatype module galaxy.datatypes.media:Flv from the datatype registry for extension flv. [2024-02-23 14:31:36,193: DEBUG/main] Retrieved datatype module galaxy.datatypes.media:Mpg from the datatype registry for extension mpg. [2024-02-23 14:31:36,195: DEBUG/main] Retrieved datatype module galaxy.datatypes.speech:TextGrid from the datatype registry for extension textgrid. [2024-02-23 14:31:36,195: DEBUG/main] Retrieved datatype module galaxy.datatypes.speech:BPF from the datatype registry for extension par. [2024-02-23 14:31:36,195: DEBUG/main] Retrieved datatype module galaxy.datatypes.tabular:Tabular from the datatype registry for extension ffindex. [2024-02-23 14:31:36,196: DEBUG/main] Retrieved datatype module galaxy.datatypes.data:Data from the datatype registry for extension ffdata. [2024-02-23 14:31:36,196: DEBUG/main] Retrieved datatype module galaxy.datatypes.binary:Pretext from the datatype registry for extension pretext. [2024-02-23 14:31:36,196: DEBUG/main] Retrieved datatype module galaxy.datatypes.text:Html from the datatype registry for extension immuneml_receptors.html. [2024-02-23 14:31:36,197: DEBUG/main] Retrieved datatype module galaxy.datatypes.binary:HexrdMaterials from the datatype registry for extension hexrd.materials.h5. [2024-02-23 14:31:36,197: DEBUG/main] Retrieved datatype module galaxy.datatypes.binary:Npz from the datatype registry for extension npz. [2024-02-23 14:31:36,197: DEBUG/main] Retrieved datatype module galaxy.datatypes.binary:HexrdImagesNpz from the datatype registry for extension hexrd.images.npz. [2024-02-23 14:31:36,197: DEBUG/main] Retrieved datatype module galaxy.datatypes.binary:HexrdEtaOmeNpz from the datatype registry for extension hexrd.eta_ome.npz. [2024-02-23 14:31:36,198: DEBUG/main] Retrieved datatype module galaxy.datatypes.binary:Npz from the datatype registry for extension hexrd.scored_orientations.npz. [2024-02-23 14:31:36,198: DEBUG/main] Retrieved datatype module galaxy.datatypes.tabular:Tabular from the datatype registry for extension hexrd.accepted_orientations. [2024-02-23 14:31:36,198: DEBUG/main] Retrieved datatype module galaxy.datatypes.text:Yaml from the datatype registry for extension hexrd.yml. [2024-02-23 14:31:36,199: DEBUG/main] Retrieved datatype module galaxy.datatypes.constructive_solid_geometry:NeperTess from the datatype registry for extension neper.tess. [2024-02-23 14:31:36,199: DEBUG/main] Retrieved datatype module galaxy.datatypes.constructive_solid_geometry:NeperTesr from the datatype registry for extension neper.tesr. [2024-02-23 14:31:36,199: DEBUG/main] Retrieved datatype module galaxy.datatypes.constructive_solid_geometry:NeperPoints from the datatype registry for extension neper.points. [2024-02-23 14:31:36,199: DEBUG/main] Retrieved datatype module galaxy.datatypes.constructive_solid_geometry:NeperPointsTabular from the datatype registry for extension neper.points.tsv. [2024-02-23 14:31:36,199: DEBUG/main] Retrieved datatype module galaxy.datatypes.constructive_solid_geometry:NeperMultiScaleCell from the datatype registry for extension neper.mscell. [2024-02-23 14:31:36,200: DEBUG/main] Retrieved datatype module galaxy.datatypes.constructive_solid_geometry:GmshMsh from the datatype registry for extension gmsh.msh. [2024-02-23 14:31:36,200: DEBUG/main] Retrieved datatype module galaxy.datatypes.constructive_solid_geometry:GmshGeo from the datatype registry for extension gmsh.geo. [2024-02-23 14:31:36,200: DEBUG/main] Retrieved datatype module galaxy.datatypes.constructive_solid_geometry:ZsetGeof from the datatype registry for extension zset.geof. [2024-02-23 14:31:36,200: DEBUG/main] Retrieved datatype module galaxy.datatypes.binary:Binary from the datatype registry for extension stl. [2024-02-23 14:31:36,200: DEBUG/main] Overriding conflicting datatype with extension 'stl', using datatype from /scratch/rico/galaxy/lib/galaxy/config/sample/datatypes_conf.xml.sample. [2024-02-23 14:31:36,201: DEBUG/main] Retrieved datatype module galaxy.datatypes.text:Text from the datatype registry for extension pov. [2024-02-23 14:31:36,201: DEBUG/main] Retrieved datatype module galaxy.datatypes.text:PithyaResult from the datatype registry for extension pithya.result. [2024-02-23 14:31:36,201: DEBUG/main] Retrieved datatype module galaxy.datatypes.text:PithyaProperty from the datatype registry for extension pithya.property. [2024-02-23 14:31:36,201: DEBUG/main] Retrieved datatype module galaxy.datatypes.text:PithyaModel from the datatype registry for extension pithya.model. [2024-02-23 14:31:36,202: DEBUG/main] Retrieved datatype module galaxy.datatypes.text:BCSLts from the datatype registry for extension bcsl.ts. [2024-02-23 14:31:36,202: DEBUG/main] Retrieved datatype module galaxy.datatypes.text:BCSLmodel from the datatype registry for extension bcsl.model. [2024-02-23 14:31:36,202: DEBUG/main] Retrieved datatype module galaxy.datatypes.text:StormSample from the datatype registry for extension storm.sample. [2024-02-23 14:31:36,202: DEBUG/main] Retrieved datatype module galaxy.datatypes.text:StormCheck from the datatype registry for extension storm.check. [2024-02-23 14:31:36,202: DEBUG/main] Retrieved datatype module galaxy.datatypes.text:CTLresult from the datatype registry for extension ctl.result. [2024-02-23 14:31:36,202: DEBUG/main] Retrieved datatype module galaxy.datatypes.text:Castep from the datatype registry for extension castep. [2024-02-23 14:31:36,202: DEBUG/main] Retrieved datatype module galaxy.datatypes.text:Param from the datatype registry for extension param. [2024-02-23 14:31:36,202: DEBUG/main] Retrieved datatype module galaxy.datatypes.text:FormattedDensity from the datatype registry for extension den_fmt. [2024-02-23 14:31:36,203: DEBUG/main] Retrieved datatype module galaxy.datatypes.larch:AthenaProject from the datatype registry for extension prj. [2024-02-23 14:31:36,203: DEBUG/main] Retrieved datatype module galaxy.datatypes.larch:FEFFInput from the datatype registry for extension inp. [2024-02-23 14:31:36,203: DEBUG/main] Retrieved datatype module galaxy.datatypes.tabular:CSV from the datatype registry for extension sp. [2024-02-23 14:31:36,203: DEBUG/main] Retrieved datatype module galaxy.datatypes.tabular:CSV from the datatype registry for extension gds. [2024-02-23 14:31:36,203: DEBUG/main] Retrieved datatype module galaxy.datatypes.tabular:CSV from the datatype registry for extension feff. [2024-02-23 14:31:36,203: DEBUG/main] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension feffit. [2024-02-23 14:31:36,203: DEBUG/main] Retrieved datatype module galaxy.datatypes.binary:Binary from the datatype registry for extension bil. [2024-02-23 14:31:36,204: DEBUG/main] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension hdr. [2024-02-23 14:31:36,204: DEBUG/main] Retrieved datatype module galaxy.datatypes.gis:Shapefile from the datatype registry for extension shp. [2024-02-23 14:31:36,204: DEBUG/main] Retrieved datatype module galaxy.datatypes.binary:FITS from the datatype registry for extension fits. [2024-02-23 14:31:36,205: DEBUG/main] Retrieved datatype module galaxy.datatypes.chain:Chain from the datatype registry for extension chain. [2024-02-23 14:31:36,205: DEBUG/main] Loaded sniffer for datatype 'galaxy.datatypes.plant_tribes:PlantTribesKsComponents' [2024-02-23 14:31:36,205: DEBUG/main] Loaded sniffer for datatype 'galaxy.datatypes.plant_tribes:Smat' [2024-02-23 14:31:36,205: DEBUG/main] Loaded sniffer for datatype 'galaxy.datatypes.mothur:Sabund' [2024-02-23 14:31:36,205: DEBUG/main] Loaded sniffer for datatype 'galaxy.datatypes.mothur:Otu' [2024-02-23 14:31:36,205: DEBUG/main] Loaded sniffer for datatype 'galaxy.datatypes.mothur:GroupAbund' [2024-02-23 14:31:36,205: DEBUG/main] Loaded sniffer for datatype 'galaxy.datatypes.mothur:SecondaryStructureMap' [2024-02-23 14:31:36,205: DEBUG/main] Loaded sniffer for datatype 'galaxy.datatypes.mothur:LowerTriangleDistanceMatrix' [2024-02-23 14:31:36,205: DEBUG/main] Loaded sniffer for datatype 'galaxy.datatypes.mothur:SquareDistanceMatrix' [2024-02-23 14:31:36,205: DEBUG/main] Loaded sniffer for datatype 'galaxy.datatypes.mothur:PairwiseDistanceMatrix' [2024-02-23 14:31:36,205: DEBUG/main] Loaded sniffer for datatype 'galaxy.datatypes.mothur:Oligos' [2024-02-23 14:31:36,205: DEBUG/main] Loaded sniffer for datatype 'galaxy.datatypes.mothur:Quantile' [2024-02-23 14:31:36,206: DEBUG/main] Loaded sniffer for datatype 'galaxy.datatypes.mothur:Frequency' [2024-02-23 14:31:36,206: DEBUG/main] Loaded sniffer for datatype 'galaxy.datatypes.mothur:LaneMask' [2024-02-23 14:31:36,206: DEBUG/main] Loaded sniffer for datatype 'galaxy.datatypes.mothur:RefTaxonomy' [2024-02-23 14:31:36,206: DEBUG/main] Loaded sniffer for datatype 'galaxy.datatypes.mothur:Axes' [2024-02-23 14:31:36,206: DEBUG/main] Loaded sniffer for datatype 'galaxy.datatypes.constructive_solid_geometry:PlyAscii' [2024-02-23 14:31:36,206: DEBUG/main] Loaded sniffer for datatype 'galaxy.datatypes.constructive_solid_geometry:PlyBinary' [2024-02-23 14:31:36,206: DEBUG/main] Loaded sniffer for datatype 'galaxy.datatypes.constructive_solid_geometry:VtkAscii' [2024-02-23 14:31:36,206: DEBUG/main] Loaded sniffer for datatype 'galaxy.datatypes.constructive_solid_geometry:VtkBinary' [2024-02-23 14:31:36,206: DEBUG/main] Loaded sniffer for datatype 'galaxy.datatypes.constructive_solid_geometry:NeperTess' [2024-02-23 14:31:36,206: DEBUG/main] Loaded sniffer for datatype 'galaxy.datatypes.constructive_solid_geometry:NeperTesr' [2024-02-23 14:31:36,206: DEBUG/main] Loaded sniffer for datatype 'galaxy.datatypes.constructive_solid_geometry:GmshMsh' [2024-02-23 14:31:36,206: DEBUG/main] Loaded sniffer for datatype 'galaxy.datatypes.goldenpath:GoldenPath' [2024-02-23 14:31:36,206: DEBUG/main] Loaded sniffer for datatype 'galaxy.datatypes.interval:ScIdx' [2024-02-23 14:31:36,206: DEBUG/main] Loaded sniffer for datatype 'galaxy.datatypes.tabular:Vcf' [2024-02-23 14:31:36,206: DEBUG/main] Loaded sniffer for datatype 'galaxy.datatypes.binary:JP2' [2024-02-23 14:31:36,206: DEBUG/main] Loaded sniffer for datatype 'galaxy.datatypes.binary:TwoBit' [2024-02-23 14:31:36,206: DEBUG/main] Loaded sniffer for datatype 'galaxy.datatypes.binary:GeminiSQLite' [2024-02-23 14:31:36,206: DEBUG/main] Loaded sniffer for datatype 'galaxy.datatypes.binary:SQmass' [2024-02-23 14:31:36,206: DEBUG/main] Loaded sniffer for datatype 'galaxy.datatypes.binary:MzSQlite' [2024-02-23 14:31:36,206: DEBUG/main] Loaded sniffer for datatype 'galaxy.datatypes.binary:OSW' [2024-02-23 14:31:36,207: DEBUG/main] Loaded sniffer for datatype 'galaxy.datatypes.binary:PQP' [2024-02-23 14:31:36,207: DEBUG/main] Loaded sniffer for datatype 'galaxy.datatypes.binary:IdpDB' [2024-02-23 14:31:36,207: DEBUG/main] Loaded sniffer for datatype 'galaxy.datatypes.binary:ElibSQlite' [2024-02-23 14:31:36,207: DEBUG/main] Loaded sniffer for datatype 'galaxy.datatypes.binary:DlibSQlite' [2024-02-23 14:31:36,207: DEBUG/main] Loaded sniffer for datatype 'galaxy.datatypes.binary:BlibSQlite' [2024-02-23 14:31:36,207: DEBUG/main] Loaded sniffer for datatype 'galaxy.datatypes.binary:ChiraSQLite' [2024-02-23 14:31:36,207: DEBUG/main] Loaded sniffer for datatype 'galaxy.datatypes.binary:CuffDiffSQlite' [2024-02-23 14:31:36,207: DEBUG/main] Loaded sniffer for datatype 'galaxy.datatypes.binary:GAFASQLite' [2024-02-23 14:31:36,207: DEBUG/main] Loaded sniffer for datatype 'galaxy.datatypes.binary:NcbiTaxonomySQlite' [2024-02-23 14:31:36,207: DEBUG/main] Loaded sniffer for datatype 'galaxy.datatypes.binary:SQlite' [2024-02-23 14:31:36,207: DEBUG/main] Loaded sniffer for datatype 'galaxy.datatypes.binary:H5MLM' [2024-02-23 14:31:36,207: DEBUG/main] Loaded sniffer for datatype 'galaxy.datatypes.binary:Cool' [2024-02-23 14:31:36,207: DEBUG/main] Loaded sniffer for datatype 'galaxy.datatypes.binary:MCool' [2024-02-23 14:31:36,207: DEBUG/main] Loaded sniffer for datatype 'galaxy.datatypes.binary:Loom' [2024-02-23 14:31:36,207: DEBUG/main] Loaded sniffer for datatype 'galaxy.datatypes.binary:Anndata' [2024-02-23 14:31:36,207: DEBUG/main] Loaded sniffer for datatype 'galaxy.datatypes.binary:Biom2' [2024-02-23 14:31:36,207: DEBUG/main] Loaded sniffer for datatype 'galaxy.datatypes.binary:HexrdMaterials' [2024-02-23 14:31:36,207: DEBUG/main] Loaded sniffer for datatype 'galaxy.datatypes.binary:H5' [2024-02-23 14:31:36,207: DEBUG/main] Loaded sniffer for datatype 'galaxy.datatypes.binary:Grib' [2024-02-23 14:31:36,207: DEBUG/main] Loaded sniffer for datatype 'galaxy.datatypes.binary:HexrdImagesNpz' [2024-02-23 14:31:36,207: DEBUG/main] Loaded sniffer for datatype 'galaxy.datatypes.binary:HexrdEtaOmeNpz' [2024-02-23 14:31:36,208: DEBUG/main] Loaded sniffer for datatype 'galaxy.datatypes.binary:Npz' [2024-02-23 14:31:36,208: DEBUG/main] Loaded sniffer for datatype 'galaxy.datatypes.binary:Bam' [2024-02-23 14:31:36,208: DEBUG/main] Loaded sniffer for datatype 'galaxy.datatypes.binary:BamQuerynameSorted' [2024-02-23 14:31:36,208: DEBUG/main] Loaded sniffer for datatype 'galaxy.datatypes.binary:BamNative' [2024-02-23 14:31:36,208: DEBUG/main] Loaded sniffer for datatype 'galaxy.datatypes.binary:CRAM' [2024-02-23 14:31:36,208: DEBUG/main] Loaded sniffer for datatype 'galaxy.datatypes.binary:Sff' [2024-02-23 14:31:36,208: DEBUG/main] Loaded sniffer for datatype 'galaxy.datatypes.binary:Sra' [2024-02-23 14:31:36,208: DEBUG/main] Loaded sniffer for datatype 'galaxy.datatypes.binary:NetCDF' [2024-02-23 14:31:36,208: DEBUG/main] Loaded sniffer for datatype 'galaxy.datatypes.binary:DAA' [2024-02-23 14:31:36,208: DEBUG/main] Loaded sniffer for datatype 'galaxy.datatypes.binary:RMA6' [2024-02-23 14:31:36,208: DEBUG/main] Loaded sniffer for datatype 'galaxy.datatypes.binary:DMND' [2024-02-23 14:31:36,208: DEBUG/main] Loaded sniffer for datatype 'galaxy.datatypes.binary:Parquet' [2024-02-23 14:31:36,208: DEBUG/main] Loaded sniffer for datatype 'galaxy.datatypes.binary:BafTar' [2024-02-23 14:31:36,208: DEBUG/main] Loaded sniffer for datatype 'galaxy.datatypes.binary:TdfTar' [2024-02-23 14:31:36,208: DEBUG/main] Loaded sniffer for datatype 'galaxy.datatypes.binary:MassHunterTar' [2024-02-23 14:31:36,208: DEBUG/main] Loaded sniffer for datatype 'galaxy.datatypes.binary:MassLynxTar' [2024-02-23 14:31:36,208: DEBUG/main] Loaded sniffer for datatype 'galaxy.datatypes.binary:YepTar' [2024-02-23 14:31:36,208: DEBUG/main] Loaded sniffer for datatype 'galaxy.datatypes.binary:WiffTar' [2024-02-23 14:31:36,208: DEBUG/main] Loaded sniffer for datatype 'galaxy.datatypes.binary:Fast5ArchiveGz' [2024-02-23 14:31:36,208: DEBUG/main] Loaded sniffer for datatype 'galaxy.datatypes.binary:Fast5ArchiveBz2' [2024-02-23 14:31:36,208: DEBUG/main] Loaded sniffer for datatype 'galaxy.datatypes.binary:Fast5Archive' [2024-02-23 14:31:36,209: DEBUG/main] Loaded sniffer for datatype 'galaxy.datatypes.binary:Meryldb' [2024-02-23 14:31:36,209: DEBUG/main] Loaded sniffer for datatype 'galaxy.datatypes.binary:Bref3' [2024-02-23 14:31:36,209: DEBUG/main] Loaded sniffer for datatype 'galaxy.datatypes.binary:PostgresqlArchive' [2024-02-23 14:31:36,209: DEBUG/main] Loaded sniffer for datatype 'galaxy.datatypes.binary:ICM' [2024-02-23 14:31:36,209: DEBUG/main] Loaded sniffer for datatype 'galaxy.datatypes.binary:Idat' [2024-02-23 14:31:36,209: DEBUG/main] Loaded sniffer for datatype 'galaxy.datatypes.binary:Trr' [2024-02-23 14:31:36,209: DEBUG/main] Loaded sniffer for datatype 'galaxy.datatypes.binary:Dcd' [2024-02-23 14:31:36,209: DEBUG/main] Loaded sniffer for datatype 'galaxy.datatypes.binary:Xtc' [2024-02-23 14:31:36,209: DEBUG/main] Loaded sniffer for datatype 'galaxy.datatypes.binary:Cpt' [2024-02-23 14:31:36,209: DEBUG/main] Loaded sniffer for datatype 'galaxy.datatypes.binary:Edr' [2024-02-23 14:31:36,209: DEBUG/main] Loaded sniffer for datatype 'galaxy.datatypes.binary:Vel' [2024-02-23 14:31:36,209: DEBUG/main] Loaded sniffer for datatype 'galaxy.datatypes.binary:Xlsx' [2024-02-23 14:31:36,209: DEBUG/main] Loaded sniffer for datatype 'galaxy.datatypes.qiime2:QIIME2Metadata' [2024-02-23 14:31:36,209: DEBUG/main] Loaded sniffer for datatype 'galaxy.datatypes.qiime2:QIIME2Artifact' [2024-02-23 14:31:36,209: DEBUG/main] Loaded sniffer for datatype 'galaxy.datatypes.qiime2:QIIME2Visualization' [2024-02-23 14:31:36,209: DEBUG/main] Loaded sniffer for datatype 'galaxy.datatypes.binary:CompressedZipArchive' [2024-02-23 14:31:36,209: DEBUG/main] Loaded sniffer for datatype 'galaxy.datatypes.binary:Pretext' [2024-02-23 14:31:36,210: DEBUG/main] Loaded sniffer for datatype 'galaxy.datatypes.annotation:Augustus' [2024-02-23 14:31:36,210: DEBUG/main] Loaded sniffer for datatype 'galaxy.datatypes.xml:Owl' [2024-02-23 14:31:36,210: DEBUG/main] Loaded sniffer for datatype 'galaxy.datatypes.chain:Chain' [2024-02-23 14:31:36,210: DEBUG/main] Loaded sniffer for datatype 'galaxy.datatypes.triples:Rdf' [2024-02-23 14:31:36,210: DEBUG/main] Loaded sniffer for datatype 'galaxy.datatypes.blast:BlastXml' [2024-02-23 14:31:36,210: DEBUG/main] Loaded sniffer for datatype 'galaxy.datatypes.images:Gifti' [2024-02-23 14:31:36,210: DEBUG/main] Loaded sniffer for datatype 'galaxy.datatypes.xml:Phyloxml' [2024-02-23 14:31:36,210: DEBUG/main] Loaded sniffer for datatype 'galaxy.datatypes.xml:Dzi' [2024-02-23 14:31:36,210: DEBUG/main] Loaded sniffer for datatype 'galaxy.datatypes.xml:Sbml' [2024-02-23 14:31:36,210: DEBUG/main] Loaded sniffer for datatype 'galaxy.datatypes.proteomics:Dta2d' [2024-02-23 14:31:36,210: DEBUG/main] Loaded sniffer for datatype 'galaxy.datatypes.proteomics:Edta' [2024-02-23 14:31:36,210: DEBUG/main] Loaded sniffer for datatype 'galaxy.datatypes.proteomics:ConsensusXML' [2024-02-23 14:31:36,210: DEBUG/main] Loaded sniffer for datatype 'galaxy.datatypes.proteomics:IdXML' [2024-02-23 14:31:36,210: DEBUG/main] Loaded sniffer for datatype 'galaxy.datatypes.proteomics:FeatureXML' [2024-02-23 14:31:36,210: DEBUG/main] Loaded sniffer for datatype 'galaxy.datatypes.proteomics:MascotXML' [2024-02-23 14:31:36,210: DEBUG/main] Loaded sniffer for datatype 'galaxy.datatypes.proteomics:Mgf' [2024-02-23 14:31:36,210: DEBUG/main] Loaded sniffer for datatype 'galaxy.datatypes.proteomics:Ms2' [2024-02-23 14:31:36,210: DEBUG/main] Loaded sniffer for datatype 'galaxy.datatypes.proteomics:Msp' [2024-02-23 14:31:36,211: DEBUG/main] Loaded sniffer for datatype 'galaxy.datatypes.proteomics:MzData' [2024-02-23 14:31:36,211: DEBUG/main] Loaded sniffer for datatype 'galaxy.datatypes.proteomics:MzIdentML' [2024-02-23 14:31:36,211: DEBUG/main] Loaded sniffer for datatype 'galaxy.datatypes.proteomics:MzML' [2024-02-23 14:31:36,211: DEBUG/main] Loaded sniffer for datatype 'galaxy.datatypes.proteomics:MzQuantML' [2024-02-23 14:31:36,211: DEBUG/main] Loaded sniffer for datatype 'galaxy.datatypes.proteomics:MzTab' [2024-02-23 14:31:36,211: DEBUG/main] Loaded sniffer for datatype 'galaxy.datatypes.proteomics:MzTab2' [2024-02-23 14:31:36,211: DEBUG/main] Loaded sniffer for datatype 'galaxy.datatypes.proteomics:ParamXml' [2024-02-23 14:31:36,211: DEBUG/main] Loaded sniffer for datatype 'galaxy.datatypes.proteomics:MzXML' [2024-02-23 14:31:36,211: DEBUG/main] Loaded sniffer for datatype 'galaxy.datatypes.proteomics:NmrML' [2024-02-23 14:31:36,211: DEBUG/main] Loaded sniffer for datatype 'galaxy.datatypes.proteomics:Kroenik' [2024-02-23 14:31:36,211: DEBUG/main] Loaded sniffer for datatype 'galaxy.datatypes.proteomics:PepList' [2024-02-23 14:31:36,211: DEBUG/main] Loaded sniffer for datatype 'galaxy.datatypes.proteomics:PSMS' [2024-02-23 14:31:36,211: DEBUG/main] Loaded sniffer for datatype 'galaxy.datatypes.proteomics:PepXml' [2024-02-23 14:31:36,211: DEBUG/main] Loaded sniffer for datatype 'galaxy.datatypes.proteomics:ProtXML' [2024-02-23 14:31:36,211: DEBUG/main] Loaded sniffer for datatype 'galaxy.datatypes.proteomics:SPLib' [2024-02-23 14:31:36,211: DEBUG/main] Loaded sniffer for datatype 'galaxy.datatypes.proteomics:TandemXML' [2024-02-23 14:31:36,211: DEBUG/main] Loaded sniffer for datatype 'galaxy.datatypes.proteomics:ThermoRAW' [2024-02-23 14:31:36,212: DEBUG/main] Loaded sniffer for datatype 'galaxy.datatypes.proteomics:TraML' [2024-02-23 14:31:36,212: DEBUG/main] Loaded sniffer for datatype 'galaxy.datatypes.proteomics:TrafoXML' [2024-02-23 14:31:36,212: DEBUG/main] Loaded sniffer for datatype 'galaxy.datatypes.proteomics:UniProtXML' [2024-02-23 14:31:36,212: DEBUG/main] Loaded sniffer for datatype 'galaxy.datatypes.proteomics:XquestXML' [2024-02-23 14:31:36,212: DEBUG/main] Loaded sniffer for datatype 'galaxy.datatypes.proteomics:XquestSpecXML' [2024-02-23 14:31:36,212: DEBUG/main] Loaded sniffer for datatype 'galaxy.datatypes.proteomics:QCML' [2024-02-23 14:31:36,212: DEBUG/main] Loaded sniffer for datatype 'galaxy.datatypes.proteomics:Wiff' [2024-02-23 14:31:36,212: DEBUG/main] Loaded sniffer for datatype 'galaxy.datatypes.proteomics:PEFF' [2024-02-23 14:31:36,212: DEBUG/main] Loaded sniffer for datatype 'galaxy.datatypes.molecules:CML' [2024-02-23 14:31:36,212: DEBUG/main] Loaded sniffer for datatype 'galaxy.datatypes.xml:GenericXml' [2024-02-23 14:31:36,212: DEBUG/main] Loaded sniffer for datatype 'galaxy.datatypes.triples:HDT' [2024-02-23 14:31:36,212: DEBUG/main] Loaded sniffer for datatype 'galaxy.datatypes.triples:Turtle' [2024-02-23 14:31:36,212: DEBUG/main] Loaded sniffer for datatype 'galaxy.datatypes.triples:NTriples' [2024-02-23 14:31:36,212: DEBUG/main] Loaded sniffer for datatype 'galaxy.datatypes.triples:Jsonld' [2024-02-23 14:31:36,212: DEBUG/main] Loaded sniffer for datatype 'galaxy.datatypes.sequence:Maf' [2024-02-23 14:31:36,212: DEBUG/main] Loaded sniffer for datatype 'galaxy.datatypes.sequence:Lav' [2024-02-23 14:31:36,212: DEBUG/main] Loaded sniffer for datatype 'galaxy.datatypes.sequence:MemePsp' [2024-02-23 14:31:36,212: DEBUG/main] Loaded sniffer for datatype 'galaxy.datatypes.sequence:Fastg' [2024-02-23 14:31:36,213: DEBUG/main] Loaded sniffer for datatype 'galaxy.datatypes.sequence:csFasta' [2024-02-23 14:31:36,213: DEBUG/main] Loaded sniffer for datatype 'galaxy.datatypes.qualityscore:QualityScoreSOLiD' [2024-02-23 14:31:36,213: DEBUG/main] Loaded sniffer for datatype 'galaxy.datatypes.qualityscore:QualityScore454' [2024-02-23 14:31:36,213: DEBUG/main] Loaded sniffer for datatype 'galaxy.datatypes.molecules:SDF' [2024-02-23 14:31:36,213: DEBUG/main] Loaded sniffer for datatype 'galaxy.datatypes.molecules:PDB' [2024-02-23 14:31:36,213: DEBUG/main] Loaded sniffer for datatype 'galaxy.datatypes.molecules:Cell' [2024-02-23 14:31:36,213: DEBUG/main] Loaded sniffer for datatype 'galaxy.datatypes.molecules:CIF' [2024-02-23 14:31:36,213: DEBUG/main] Loaded sniffer for datatype 'galaxy.datatypes.molecules:ExtendedXYZ' [2024-02-23 14:31:36,213: DEBUG/main] Loaded sniffer for datatype 'galaxy.datatypes.molecules:XYZ' [2024-02-23 14:31:36,213: DEBUG/main] Loaded sniffer for datatype 'galaxy.datatypes.molecules:MOL2' [2024-02-23 14:31:36,213: DEBUG/main] Loaded sniffer for datatype 'galaxy.datatypes.molecules:InChI' [2024-02-23 14:31:36,213: DEBUG/main] Loaded sniffer for datatype 'galaxy.datatypes.molecules:FPS' [2024-02-23 14:31:36,213: DEBUG/main] Loaded sniffer for datatype 'galaxy.datatypes.molecules:PQR' [2024-02-23 14:31:36,213: DEBUG/main] Loaded sniffer for datatype 'galaxy.datatypes.molecules:GRO' [2024-02-23 14:31:36,213: DEBUG/main] Loaded sniffer for datatype 'galaxy.datatypes.phylip:Phylip' [2024-02-23 14:31:36,213: DEBUG/main] Loaded sniffer for datatype 'galaxy.datatypes.sequence:Fasta' [2024-02-23 14:31:36,214: DEBUG/main] Loaded sniffer for datatype 'galaxy.datatypes.sequence:FastqCSSanger' [2024-02-23 14:31:36,214: DEBUG/main] Loaded sniffer for datatype 'galaxy.datatypes.sequence:FastqSanger' [2024-02-23 14:31:36,214: DEBUG/main] Loaded sniffer for datatype 'galaxy.datatypes.sequence:Fastq' [2024-02-23 14:31:36,214: DEBUG/main] Loaded sniffer for datatype 'galaxy.datatypes.interval:Wiggle' [2024-02-23 14:31:36,214: DEBUG/main] Loaded sniffer for datatype 'galaxy.datatypes.text:Html' [2024-02-23 14:31:36,214: DEBUG/main] Loaded sniffer for datatype 'galaxy.datatypes.images:Pdf' [2024-02-23 14:31:36,214: DEBUG/main] Loaded sniffer for datatype 'galaxy.datatypes.sequence:Axt' [2024-02-23 14:31:36,214: DEBUG/main] Loaded sniffer for datatype 'galaxy.datatypes.sequence:Genbank' [2024-02-23 14:31:36,214: DEBUG/main] Loaded sniffer for datatype 'galaxy.datatypes.interval:Bed' [2024-02-23 14:31:36,214: DEBUG/main] Loaded sniffer for datatype 'galaxy.datatypes.interval:CustomTrack' [2024-02-23 14:31:36,214: DEBUG/main] Loaded sniffer for datatype 'galaxy.datatypes.interval:Gtf' [2024-02-23 14:31:36,214: DEBUG/main] Loaded sniffer for datatype 'galaxy.datatypes.interval:Gff' [2024-02-23 14:31:36,214: DEBUG/main] Loaded sniffer for datatype 'galaxy.datatypes.interval:Gff3' [2024-02-23 14:31:36,214: DEBUG/main] Loaded sniffer for datatype 'galaxy.datatypes.tabular:Pileup' [2024-02-23 14:31:36,215: DEBUG/main] Loaded sniffer for datatype 'galaxy.datatypes.tabular:Psl' [2024-02-23 14:31:36,215: DEBUG/main] Loaded sniffer for datatype 'galaxy.datatypes.text:Paf' [2024-02-23 14:31:36,215: DEBUG/main] Loaded sniffer for datatype 'galaxy.datatypes.interval:Interval' [2024-02-23 14:31:36,215: DEBUG/main] Loaded sniffer for datatype 'galaxy.datatypes.tabular:Sam' [2024-02-23 14:31:36,215: DEBUG/main] Loaded sniffer for datatype 'galaxy.datatypes.data:Newick' [2024-02-23 14:31:36,215: DEBUG/main] Loaded sniffer for datatype 'galaxy.datatypes.data:Nexus' [2024-02-23 14:31:36,215: DEBUG/main] Loaded sniffer for datatype 'galaxy.datatypes.text:IQTree' [2024-02-23 14:31:36,215: DEBUG/main] Loaded sniffer for datatype 'galaxy.datatypes.text:Obo' [2024-02-23 14:31:36,215: DEBUG/main] Loaded sniffer for datatype 'galaxy.datatypes.text:Arff' [2024-02-23 14:31:36,215: DEBUG/main] Loaded sniffer for datatype 'galaxy.datatypes.text:Ipynb' [2024-02-23 14:31:36,215: DEBUG/main] Loaded sniffer for datatype 'galaxy.datatypes.text:Biom1' [2024-02-23 14:31:36,215: DEBUG/main] Loaded sniffer for datatype 'galaxy.datatypes.text:ImgtJson' [2024-02-23 14:31:36,215: DEBUG/main] Loaded sniffer for datatype 'galaxy.datatypes.text:GeoJson' [2024-02-23 14:31:36,215: DEBUG/main] Loaded sniffer for datatype 'galaxy.datatypes.text:PithyaResult' [2024-02-23 14:31:36,216: DEBUG/main] Loaded sniffer for datatype 'galaxy.datatypes.text:BCSLts' [2024-02-23 14:31:36,216: DEBUG/main] Loaded sniffer for datatype 'galaxy.datatypes.text:Json' [2024-02-23 14:31:36,216: DEBUG/main] Loaded sniffer for datatype 'galaxy.datatypes.genetics:GenotypeMatrix' [2024-02-23 14:31:36,216: DEBUG/main] Loaded sniffer for datatype 'galaxy.datatypes.genetics:DataIn' [2024-02-23 14:31:36,216: DEBUG/main] Loaded sniffer for datatype 'galaxy.datatypes.genetics:MarkerMap' [2024-02-23 14:31:36,216: DEBUG/main] Loaded sniffer for datatype 'galaxy.datatypes.genetics:AllegroLOD' [2024-02-23 14:31:36,216: DEBUG/main] Loaded sniffer for datatype 'galaxy.datatypes.sequence:RNADotPlotMatrix' [2024-02-23 14:31:36,216: DEBUG/main] Loaded sniffer for datatype 'galaxy.datatypes.sequence:DotBracket' [2024-02-23 14:31:36,216: DEBUG/main] Loaded sniffer for datatype 'galaxy.datatypes.tabular:CMAP' [2024-02-23 14:31:36,216: DEBUG/main] Loaded sniffer for datatype 'galaxy.datatypes.tabular:ConnectivityTable' [2024-02-23 14:31:36,216: DEBUG/main] Loaded sniffer for datatype 'galaxy.datatypes.tabular:CSV' [2024-02-23 14:31:36,216: DEBUG/main] Loaded sniffer for datatype 'galaxy.datatypes.metacyto:mSummary' [2024-02-23 14:31:36,216: DEBUG/main] Loaded sniffer for datatype 'galaxy.datatypes.metacyto:mStats' [2024-02-23 14:31:36,216: DEBUG/main] Loaded sniffer for datatype 'galaxy.datatypes.tabular:TSV' [2024-02-23 14:31:36,216: DEBUG/main] Loaded sniffer for datatype 'galaxy.datatypes.tabular:MatrixMarket' [2024-02-23 14:31:36,217: DEBUG/main] Loaded sniffer for datatype 'galaxy.datatypes.msa:Hmmer2' [2024-02-23 14:31:36,217: DEBUG/main] Loaded sniffer for datatype 'galaxy.datatypes.msa:Hmmer3' [2024-02-23 14:31:36,217: DEBUG/main] Loaded sniffer for datatype 'galaxy.datatypes.msa:Stockholm_1_0' [2024-02-23 14:31:36,217: DEBUG/main] Loaded sniffer for datatype 'galaxy.datatypes.msa:MauveXmfa' [2024-02-23 14:31:36,217: DEBUG/main] Loaded sniffer for datatype 'galaxy.datatypes.msa:InfernalCM' [2024-02-23 14:31:36,217: DEBUG/main] Loaded sniffer for datatype 'galaxy.datatypes.annotation:SnapHmm' [2024-02-23 14:31:36,217: DEBUG/main] Loaded sniffer for datatype 'galaxy.datatypes.microarrays:Cel' [2024-02-23 14:31:36,217: DEBUG/main] Loaded sniffer for datatype 'galaxy.datatypes.microarrays:Gpr' [2024-02-23 14:31:36,217: DEBUG/main] Loaded sniffer for datatype 'galaxy.datatypes.microarrays:Gal' [2024-02-23 14:31:36,217: DEBUG/main] Loaded sniffer for datatype 'galaxy.datatypes.binary:RData' [2024-02-23 14:31:36,217: DEBUG/main] Loaded sniffer for datatype 'galaxy.datatypes.binary:RDS' [2024-02-23 14:31:36,217: DEBUG/main] Loaded sniffer for datatype 'galaxy.datatypes.images:Mrc2014' [2024-02-23 14:31:36,217: DEBUG/main] Loaded sniffer for datatype 'galaxy.datatypes.images:Jpg' [2024-02-23 14:31:36,217: DEBUG/main] Loaded sniffer for datatype 'galaxy.datatypes.images:Png' [2024-02-23 14:31:36,218: DEBUG/main] Loaded sniffer for datatype 'galaxy.datatypes.images:OMETiff' [2024-02-23 14:31:36,218: DEBUG/main] Loaded sniffer for datatype 'galaxy.datatypes.images:Tiff' [2024-02-23 14:31:36,218: DEBUG/main] Loaded sniffer for datatype 'galaxy.datatypes.images:Bmp' [2024-02-23 14:31:36,218: DEBUG/main] Loaded sniffer for datatype 'galaxy.datatypes.images:Gif' [2024-02-23 14:31:36,218: DEBUG/main] Loaded sniffer for datatype 'galaxy.datatypes.images:Im' [2024-02-23 14:31:36,218: DEBUG/main] Loaded sniffer for datatype 'galaxy.datatypes.images:Pcd' [2024-02-23 14:31:36,218: DEBUG/main] Loaded sniffer for datatype 'galaxy.datatypes.images:Pcx' [2024-02-23 14:31:36,218: DEBUG/main] Loaded sniffer for datatype 'galaxy.datatypes.images:Ppm' [2024-02-23 14:31:36,218: DEBUG/main] Loaded sniffer for datatype 'galaxy.datatypes.images:Psd' [2024-02-23 14:31:36,218: DEBUG/main] Loaded sniffer for datatype 'galaxy.datatypes.images:Xbm' [2024-02-23 14:31:36,218: DEBUG/main] Loaded sniffer for datatype 'galaxy.datatypes.images:Rgb' [2024-02-23 14:31:36,218: DEBUG/main] Loaded sniffer for datatype 'galaxy.datatypes.images:Pbm' [2024-02-23 14:31:36,218: DEBUG/main] Loaded sniffer for datatype 'galaxy.datatypes.images:Pgm' [2024-02-23 14:31:36,218: DEBUG/main] Loaded sniffer for datatype 'galaxy.datatypes.images:Xpm' [2024-02-23 14:31:36,219: DEBUG/main] Loaded sniffer for datatype 'galaxy.datatypes.images:Eps' [2024-02-23 14:31:36,219: DEBUG/main] Loaded sniffer for datatype 'galaxy.datatypes.images:Rast' [2024-02-23 14:31:36,219: DEBUG/main] Loaded sniffer for datatype 'galaxy.datatypes.images:Tck' [2024-02-23 14:31:36,219: DEBUG/main] Loaded sniffer for datatype 'galaxy.datatypes.images:Trk' [2024-02-23 14:31:36,219: DEBUG/main] Loaded sniffer for datatype 'galaxy.datatypes.images:Nifti1' [2024-02-23 14:31:36,219: DEBUG/main] Loaded sniffer for datatype 'galaxy.datatypes.images:Nifti2' [2024-02-23 14:31:36,219: DEBUG/main] Loaded sniffer for datatype 'galaxy.datatypes.images:Star' [2024-02-23 14:31:36,219: DEBUG/main] Loaded sniffer for datatype 'galaxy.datatypes.media:Wav' [2024-02-23 14:31:36,219: DEBUG/main] Loaded sniffer for datatype 'galaxy.datatypes.media:Mkv' [2024-02-23 14:31:36,219: DEBUG/main] Loaded sniffer for datatype 'galaxy.datatypes.media:Mp3' [2024-02-23 14:31:36,219: DEBUG/main] Loaded sniffer for datatype 'galaxy.datatypes.media:Mp4' [2024-02-23 14:31:36,219: DEBUG/main] Loaded sniffer for datatype 'galaxy.datatypes.media:Flv' [2024-02-23 14:31:36,219: DEBUG/main] Loaded sniffer for datatype 'galaxy.datatypes.media:Mpg' [2024-02-23 14:31:36,219: DEBUG/main] Loaded sniffer for datatype 'galaxy.datatypes.speech:TextGrid' [2024-02-23 14:31:36,220: DEBUG/main] Loaded sniffer for datatype 'galaxy.datatypes.speech:BPF' [2024-02-23 14:31:36,220: DEBUG/main] Loaded sniffer for datatype 'galaxy.datatypes.larch:FEFFInput' [2024-02-23 14:31:36,220: DEBUG/main] Loaded sniffer for datatype 'galaxy.datatypes.larch:AthenaProject' [2024-02-23 14:31:36,220: DEBUG/main] Loaded sniffer for datatype 'galaxy.datatypes.text:Castep' [2024-02-23 14:31:36,220: DEBUG/main] Loaded sniffer for datatype 'galaxy.datatypes.text:CTLresult' [2024-02-23 14:31:36,220: DEBUG/main] Loaded sniffer for datatype 'galaxy.datatypes.text:FormattedDensity' [2024-02-23 14:31:36,220: DEBUG/main] Loaded sniffer for datatype 'galaxy.datatypes.text:Param' [2024-02-23 14:31:36,220: DEBUG/main] Loaded sniffer for datatype 'galaxy.datatypes.text:Yaml' [2024-02-23 14:31:36,220: DEBUG/main] Loaded sniffer for datatype 'galaxy.datatypes.binary:OxliCountGraph' [2024-02-23 14:31:36,220: DEBUG/main] Loaded sniffer for datatype 'galaxy.datatypes.binary:OxliNodeGraph' [2024-02-23 14:31:36,220: DEBUG/main] Loaded sniffer for datatype 'galaxy.datatypes.binary:OxliTagSet' [2024-02-23 14:31:36,220: DEBUG/main] Loaded sniffer for datatype 'galaxy.datatypes.binary:OxliStopTags' [2024-02-23 14:31:36,220: DEBUG/main] Loaded sniffer for datatype 'galaxy.datatypes.binary:OxliSubset' [2024-02-23 14:31:36,220: DEBUG/main] Loaded sniffer for datatype 'galaxy.datatypes.binary:OxliGraphLabels' [2024-02-23 14:31:36,221: DEBUG/main] Loaded sniffer for datatype 'galaxy.datatypes.binary:FITS' [2024-02-23 14:31:36,221: DEBUG/main] Loaded sniffer for datatype 'galaxy.datatypes.neo4j:Neo4jDBzip' [2024-02-23 14:31:36,221: DEBUG/main] Loaded sniffer for datatype 'galaxy.datatypes.text:PithyaProperty' [2024-02-23 14:31:36,221: DEBUG/main] Loaded sniffer for datatype 'galaxy.datatypes.text:PithyaModel' [2024-02-23 14:31:36,221: DEBUG/main] Loaded sniffer for datatype 'galaxy.datatypes.text:BCSLmodel' [2024-02-23 14:31:36,221: DEBUG/main] Loaded sniffer for datatype 'galaxy.datatypes.text:StormSample' [2024-02-23 14:31:36,221: DEBUG/main] Loaded sniffer for datatype 'galaxy.datatypes.text:StormCheck' [2024-02-23 14:31:36,228: DEBUG/main] Build site file [tool-data/shared/ucsc/ucsc_build_sites.txt] not found using sample [tool-data/shared/ucsc/ucsc_build_sites.txt.sample]. [2024-02-23 14:31:36,228: DEBUG/main] Loaded build site 'ucsc': tool-data/shared/ucsc/ucsc_build_sites.txt.sample with display sites: ['main', 'test', 'archaea', 'ucla'] [2024-02-23 14:31:36,230: DEBUG/main] Loaded build site 'gbrowse': tool-data/shared/gbrowse/gbrowse_build_sites.txt with display sites: ['modencode', 'sgd_yeast', 'tair', 'wormbase', 'wormbase_ws120', 'wormbase_ws140', 'wormbase_ws170', 'wormbase_ws180', 'wormbase_ws190', 'wormbase_ws200', 'wormbase_ws204', 'wormbase_ws210', 'wormbase_ws220', 'wormbase_ws225'] [2024-02-23 14:31:36,230: DEBUG/main] Loaded build site 'ensembl': tool-data/shared/ensembl/ensembl_sites.txt [2024-02-23 14:31:36,231: DEBUG/main] Loaded build site 'ensembl_data_url': tool-data/shared/ensembl/ensembl_sites_data_URL.txt [2024-02-23 14:31:36,231: DEBUG/main] Build site file [tool-data/shared/igv/igv_build_sites.txt] not found using sample [tool-data/shared/igv/igv_build_sites.txt.sample]. [2024-02-23 14:31:36,231: DEBUG/main] Loaded build site 'igv': tool-data/shared/igv/igv_build_sites.txt.sample [2024-02-23 14:31:36,231: DEBUG/main] Build site file [tool-data/shared/rviewer/rviewer_build_sites.txt] not found using sample [tool-data/shared/rviewer/rviewer_build_sites.txt.sample]. [2024-02-23 14:31:36,231: DEBUG/main] Loaded build site 'rviewer': tool-data/shared/rviewer/rviewer_build_sites.txt.sample [2024-02-23 14:31:36,235: DEBUG/main] Loading references to tool sheds from /tmp/tmpqrlh6ih1/tool_sheds_conf.xml [2024-02-23 14:31:36,235: DEBUG/main] Loaded reference to tool shed: Target Shed [2024-02-23 14:31:36,236: INFO/main] Successfully executed Celery task clean_object_store_caches to prune object store cache directories clean_object_store_caches to prune object store cache directories (0.416 ms) [2024-02-23 14:31:36,258: INFO/main] Task galaxy.clean_object_store_caches[0cd32a96-9d0e-4f4d-9772-212740dc8b8c] succeeded in 1.1198743890272453s: None ==> /tmp/tmpqrlh6ih1/gravity/log/gunicorn.log <== uvicorn.access INFO 2024-02-23 14:31:39,245 [pN:main.1,p:78709,tN:MainThread] 127.0.0.1:59058 - "GET /history/current_history_json?since=2024-02-23T19:31:05.000216 HTTP/1.1" 200 uvicorn.access INFO 2024-02-23 14:31:39,246 [pN:main.1,p:78709,tN:MainThread] 127.0.0.1:59042 - "GET /api/entry_points?running=true HTTP/1.1" 200 uvicorn.access INFO 2024-02-23 14:31:41,884 [pN:main.1,p:78709,tN:MainThread] 127.0.0.1:59064 - "GET /history/current_history_json?since=2024-02-23T19:31:05.000216 HTTP/1.1" 200 uvicorn.access INFO 2024-02-23 14:31:44,914 [pN:main.1,p:78709,tN:MainThread] 127.0.0.1:59080 - "GET /history/current_history_json?since=2024-02-23T19:31:05.000216 HTTP/1.1" 200 uvicorn.access INFO 2024-02-23 14:31:47,947 [pN:main.1,p:78709,tN:MainThread] 127.0.0.1:58360 - "GET /history/current_history_json?since=2024-02-23T19:31:05.000216 HTTP/1.1" 200 uvicorn.access INFO 2024-02-23 14:31:49,232 [pN:main.1,p:78709,tN:MainThread] 127.0.0.1:58360 - "GET /api/entry_points?running=true HTTP/1.1" 200 uvicorn.access INFO 2024-02-23 14:31:50,978 [pN:main.1,p:78709,tN:MainThread] 127.0.0.1:58360 - "GET /history/current_history_json?since=2024-02-23T19:31:05.000216 HTTP/1.1" 200 uvicorn.access INFO 2024-02-23 14:31:54,007 [pN:main.1,p:78709,tN:MainThread] 127.0.0.1:58364 - "GET /history/current_history_json?since=2024-02-23T19:31:05.000216 HTTP/1.1" 200 uvicorn.access INFO 2024-02-23 14:31:57,035 [pN:main.1,p:78709,tN:MainThread] 127.0.0.1:33278 - "GET /history/current_history_json?since=2024-02-23T19:31:05.000216 HTTP/1.1" 200 uvicorn.access INFO 2024-02-23 14:31:59,235 [pN:main.1,p:78709,tN:MainThread] 127.0.0.1:33288 - "GET /api/entry_points?running=true HTTP/1.1" 200 uvicorn.access INFO 2024-02-23 14:32:00,061 [pN:main.1,p:78709,tN:MainThread] 127.0.0.1:33288 - "GET /history/current_history_json?since=2024-02-23T19:31:05.000216 HTTP/1.1" 200 uvicorn.access INFO 2024-02-23 14:32:03,091 [pN:main.1,p:78709,tN:MainThread] 127.0.0.1:33290 - "GET /history/current_history_json?since=2024-02-23T19:31:05.000216 HTTP/1.1" 200 uvicorn.access INFO 2024-02-23 14:32:06,121 [pN:main.1,p:78709,tN:MainThread] 127.0.0.1:51182 - "GET /history/current_history_json?since=2024-02-23T19:31:05.000216 HTTP/1.1" 200 uvicorn.access INFO 2024-02-23 14:32:09,178 [pN:main.1,p:78709,tN:MainThread] 127.0.0.1:51190 - "GET /history/current_history_json?since=2024-02-23T19:31:05.000216 HTTP/1.1" 200 uvicorn.access INFO 2024-02-23 14:32:09,235 [pN:main.1,p:78709,tN:MainThread] 127.0.0.1:51190 - "GET /api/entry_points?running=true HTTP/1.1" 200 uvicorn.access INFO 2024-02-23 14:32:12,215 [pN:main.1,p:78709,tN:MainThread] 127.0.0.1:51200 - "GET /history/current_history_json?since=2024-02-23T19:31:05.000216 HTTP/1.1" 200 uvicorn.access INFO 2024-02-23 14:32:15,244 [pN:main.1,p:78709,tN:MainThread] 127.0.0.1:51208 - "GET /history/current_history_json?since=2024-02-23T19:31:05.000216 HTTP/1.1" 200 uvicorn.access INFO 2024-02-23 14:32:18,272 [pN:main.1,p:78709,tN:MainThread] 127.0.0.1:49292 - "GET /history/current_history_json?since=2024-02-23T19:31:05.000216 HTTP/1.1" 200 uvicorn.access INFO 2024-02-23 14:32:19,237 [pN:main.1,p:78709,tN:MainThread] 127.0.0.1:49292 - "GET /api/entry_points?running=true HTTP/1.1" 200 uvicorn.access INFO 2024-02-23 14:32:21,303 [pN:main.1,p:78709,tN:MainThread] 127.0.0.1:49304 - "GET /history/current_history_json?since=2024-02-23T19:31:05.000216 HTTP/1.1" 200 uvicorn.access INFO 2024-02-23 14:32:24,334 [pN:main.1,p:78709,tN:MainThread] 127.0.0.1:49306 - "GET /history/current_history_json?since=2024-02-23T19:31:05.000216 HTTP/1.1" 200 uvicorn.access INFO 2024-02-23 14:32:27,364 [pN:main.1,p:78709,tN:MainThread] 127.0.0.1:52516 - "GET /history/current_history_json?since=2024-02-23T19:31:05.000216 HTTP/1.1" 200 uvicorn.access INFO 2024-02-23 14:32:29,237 [pN:main.1,p:78709,tN:MainThread] 127.0.0.1:52516 - "GET /api/entry_points?running=true HTTP/1.1" 200 uvicorn.access INFO 2024-02-23 14:32:30,394 [pN:main.1,p:78709,tN:MainThread] 127.0.0.1:52516 - "GET /history/current_history_json?since=2024-02-23T19:31:05.000216 HTTP/1.1" 200 uvicorn.access INFO 2024-02-23 14:32:34,227 [pN:main.1,p:78709,tN:MainThread] 127.0.0.1:52530 - "GET /history/current_history_json?since=2024-02-23T19:31:05.000216 HTTP/1.1" 200 uvicorn.access INFO 2024-02-23 14:32:40,226 [pN:main.1,p:78709,tN:MainThread] 127.0.0.1:55960 - 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"GET /history/current_history_json?since=2024-02-23T19:31:05.000216 HTTP/1.1" 200 uvicorn.access INFO 2024-02-23 14:36:23,898 [pN:main.1,p:78709,tN:MainThread] 127.0.0.1:46796 - "GET /history/current_history_json?since=2024-02-23T19:31:05.000216 HTTP/1.1" 200 uvicorn.access INFO 2024-02-23 14:36:26,927 [pN:main.1,p:78709,tN:MainThread] 127.0.0.1:44190 - "GET /history/current_history_json?since=2024-02-23T19:31:05.000216 HTTP/1.1" 200 uvicorn.access INFO 2024-02-23 14:36:27,535 [pN:main.1,p:78709,tN:MainThread] 127.0.0.1:44190 - "GET /api/entry_points?running=true HTTP/1.1" 200 uvicorn.access INFO 2024-02-23 14:36:29,958 [pN:main.1,p:78709,tN:MainThread] 127.0.0.1:44196 - "GET /history/current_history_json?since=2024-02-23T19:31:05.000216 HTTP/1.1" 200 uvicorn.access INFO 2024-02-23 14:36:32,986 [pN:main.1,p:78709,tN:MainThread] 127.0.0.1:44202 - "GET /history/current_history_json?since=2024-02-23T19:31:05.000216 HTTP/1.1" 200 ==> /tmp/tmpqrlh6ih1/gravity/log/celery-beat.log <== [2024-02-23 14:36:34,242: DEBUG/MainProcess] beat: Synchronizing schedule... [2024-02-23 14:36:34,243: DEBUG/MainProcess] beat: Waking up in 5.00 minutes. ==> /tmp/tmpqrlh6ih1/gravity/log/gunicorn.log <== uvicorn.access INFO 2024-02-23 14:36:36,013 [pN:main.1,p:78709,tN:MainThread] 127.0.0.1:47172 - "GET /history/current_history_json?since=2024-02-23T19:31:05.000216 HTTP/1.1" 200 uvicorn.access INFO 2024-02-23 14:36:37,534 [pN:main.1,p:78709,tN:MainThread] 127.0.0.1:47172 - "GET /api/entry_points?running=true HTTP/1.1" 200 uvicorn.access INFO 2024-02-23 14:36:39,042 [pN:main.1,p:78709,tN:MainThread] 127.0.0.1:47172 - "GET /history/current_history_json?since=2024-02-23T19:31:05.000216 HTTP/1.1" 200 uvicorn.access INFO 2024-02-23 14:36:42,077 [pN:main.1,p:78709,tN:MainThread] 127.0.0.1:47182 - "GET /history/current_history_json?since=2024-02-23T19:31:05.000216 HTTP/1.1" 200 uvicorn.access INFO 2024-02-23 14:36:45,106 [pN:main.1,p:78709,tN:MainThread] 127.0.0.1:47188 - "GET /history/current_history_json?since=2024-02-23T19:31:05.000216 HTTP/1.1" 200 uvicorn.access INFO 2024-02-23 14:36:47,538 [pN:main.1,p:78709,tN:MainThread] 127.0.0.1:51220 - "GET /api/entry_points?running=true HTTP/1.1" 200 uvicorn.access INFO 2024-02-23 14:36:48,135 [pN:main.1,p:78709,tN:MainThread] 127.0.0.1:51220 - "GET /history/current_history_json?since=2024-02-23T19:31:05.000216 HTTP/1.1" 200 uvicorn.access INFO 2024-02-23 14:36:51,166 [pN:main.1,p:78709,tN:MainThread] 127.0.0.1:51236 - "GET /history/current_history_json?since=2024-02-23T19:31:05.000216 HTTP/1.1" 200 uvicorn.access INFO 2024-02-23 14:36:54,194 [pN:main.1,p:78709,tN:MainThread] 127.0.0.1:51252 - "GET /history/current_history_json?since=2024-02-23T19:31:05.000216 HTTP/1.1" 200 uvicorn.access INFO 2024-02-23 14:36:57,223 [pN:main.1,p:78709,tN:MainThread] 127.0.0.1:59054 - "GET /history/current_history_json?since=2024-02-23T19:31:05.000216 HTTP/1.1" 200 uvicorn.access INFO 2024-02-23 14:36:57,539 [pN:main.1,p:78709,tN:MainThread] 127.0.0.1:59054 - "GET /api/entry_points?running=true HTTP/1.1" 200 uvicorn.access INFO 2024-02-23 14:37:00,252 [pN:main.1,p:78709,tN:MainThread] 127.0.0.1:59056 - "GET /history/current_history_json?since=2024-02-23T19:31:05.000216 HTTP/1.1" 200 uvicorn.access INFO 2024-02-23 14:37:03,283 [pN:main.1,p:78709,tN:MainThread] 127.0.0.1:59058 - "GET /history/current_history_json?since=2024-02-23T19:31:05.000216 HTTP/1.1" 200 uvicorn.access INFO 2024-02-23 14:37:06,312 [pN:main.1,p:78709,tN:MainThread] 127.0.0.1:40442 - "GET /history/current_history_json?since=2024-02-23T19:31:05.000216 HTTP/1.1" 200 uvicorn.access INFO 2024-02-23 14:37:07,540 [pN:main.1,p:78709,tN:MainThread] 127.0.0.1:40442 - "GET /api/entry_points?running=true HTTP/1.1" 200 uvicorn.access INFO 2024-02-23 14:37:09,340 [pN:main.1,p:78709,tN:MainThread] 127.0.0.1:40442 - "GET /history/current_history_json?since=2024-02-23T19:31:05.000216 HTTP/1.1" 200 uvicorn.access INFO 2024-02-23 14:37:12,369 [pN:main.1,p:78709,tN:MainThread] 127.0.0.1:40452 - "GET 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14:37:39,651 [pN:main.1,p:78709,tN:MainThread] 127.0.0.1:48384 - "GET /history/current_history_json?since=2024-02-23T19:31:05.000216 HTTP/1.1" 200 uvicorn.access INFO 2024-02-23 14:37:42,682 [pN:main.1,p:78709,tN:MainThread] 127.0.0.1:48392 - "GET /history/current_history_json?since=2024-02-23T19:31:05.000216 HTTP/1.1" 200 uvicorn.access INFO 2024-02-23 14:37:45,764 [pN:main.1,p:78709,tN:MainThread] 127.0.0.1:42318 - "GET /history/current_history_json?since=2024-02-23T19:31:05.000216 HTTP/1.1" 200 uvicorn.access INFO 2024-02-23 14:37:47,545 [pN:main.1,p:78709,tN:MainThread] 127.0.0.1:42318 - "GET /api/entry_points?running=true HTTP/1.1" 200 uvicorn.access INFO 2024-02-23 14:37:48,830 [pN:main.1,p:78709,tN:MainThread] 127.0.0.1:42318 - "GET /history/current_history_json?since=2024-02-23T19:31:05.000216 HTTP/1.1" 200 uvicorn.access INFO 2024-02-23 14:37:51,858 [pN:main.1,p:78709,tN:MainThread] 127.0.0.1:42334 - "GET /history/current_history_json?since=2024-02-23T19:31:05.000216 HTTP/1.1" 200 uvicorn.access INFO 2024-02-23 14:37:54,890 [pN:main.1,p:78709,tN:MainThread] 127.0.0.1:42350 - "GET /history/current_history_json?since=2024-02-23T19:31:05.000216 HTTP/1.1" 200 uvicorn.access INFO 2024-02-23 14:37:57,545 [pN:main.1,p:78709,tN:MainThread] 127.0.0.1:58970 - "GET /api/entry_points?running=true HTTP/1.1" 200 uvicorn.access INFO 2024-02-23 14:37:57,918 [pN:main.1,p:78709,tN:MainThread] 127.0.0.1:58970 - "GET /history/current_history_json?since=2024-02-23T19:31:05.000216 HTTP/1.1" 200 uvicorn.access INFO 2024-02-23 14:38:01,223 [pN:main.1,p:78709,tN:MainThread] 127.0.0.1:58972 - "GET /history/current_history_json?since=2024-02-23T19:31:05.000216 HTTP/1.1" 200 uvicorn.access INFO 2024-02-23 14:38:05,315 [pN:main.1,p:78709,tN:MainThread] 127.0.0.1:58982 - "GET /history/current_history_json?since=2024-02-23T19:31:05.000216 HTTP/1.1" 200 uvicorn.access INFO 2024-02-23 14:38:07,464 [pN:main.1,p:78709,tN:MainThread] 127.0.0.1:38296 - "GET /api/tools/ncbi_fcs_adaptor/build?version=latest&tool_version=latest HTTP/1.1" 200 uvicorn.access INFO 2024-02-23 14:38:07,569 [pN:main.1,p:78709,tN:MainThread] 127.0.0.1:38296 - "POST /api/tools/ncbi_fcs_adaptor/build HTTP/1.1" 200 uvicorn.access INFO 2024-02-23 14:38:07,598 [pN:main.1,p:78709,tN:MainThread] 127.0.0.1:38312 - "GET /api/entry_points?running=true HTTP/1.1" 200 uvicorn.access INFO 2024-02-23 14:38:08,342 [pN:main.1,p:78709,tN:MainThread] 127.0.0.1:38312 - "GET /history/current_history_json?since=2024-02-23T19:31:05.000216 HTTP/1.1" 200 uvicorn.access INFO 2024-02-23 14:38:11,372 [pN:main.1,p:78709,tN:MainThread] 127.0.0.1:38318 - "GET /history/current_history_json?since=2024-02-23T19:31:05.000216 HTTP/1.1" 200 uvicorn.access INFO 2024-02-23 14:38:14,401 [pN:main.1,p:78709,tN:MainThread] 127.0.0.1:38326 - "GET /history/current_history_json?since=2024-02-23T19:31:05.000216 HTTP/1.1" 200 uvicorn.access INFO 2024-02-23 14:38:17,430 [pN:main.1,p:78709,tN:MainThread] 127.0.0.1:40108 - "GET /history/current_history_json?since=2024-02-23T19:31:05.000216 HTTP/1.1" 200 uvicorn.access INFO 2024-02-23 14:38:17,588 [pN:main.1,p:78709,tN:MainThread] 127.0.0.1:40108 - "GET /api/entry_points?running=true HTTP/1.1" 200 galaxy.tools INFO 2024-02-23 14:38:19,507 [pN:main.1,p:78709,tN:WSGI_7] Validated and populated state for tool request (4.275 ms) galaxy.tools.actions INFO 2024-02-23 14:38:19,523 [pN:main.1,p:78709,tN:WSGI_7] Handled output named output1 for tool CONVERTER_gz_to_uncompressed (1.515 ms) galaxy.tools.actions INFO 2024-02-23 14:38:19,523 [pN:main.1,p:78709,tN:WSGI_7] Added output datasets to history (0.330 ms) galaxy.tools.actions INFO 2024-02-23 14:38:19,525 [pN:main.1,p:78709,tN:WSGI_7] Setup for job Job[unflushed,tool_id=CONVERTER_gz_to_uncompressed] complete, ready to be enqueued (1.727 ms) galaxy.tools.actions INFO 2024-02-23 14:38:19,553 [pN:main.1,p:78709,tN:WSGI_7] Flushed transaction for job Job[id=2,tool_id=CONVERTER_gz_to_uncompressed] (27.383 ms) galaxy.web_stack.handlers INFO 2024-02-23 14:38:19,562 [pN:main.1,p:78709,tN:WSGI_7] Flushed transaction for Job[id=2,tool_id=CONVERTER_gz_to_uncompressed] (8.918 ms) galaxy.web_stack.handlers INFO 2024-02-23 14:38:19,562 [pN:main.1,p:78709,tN:WSGI_7] (Job[id=2,tool_id=CONVERTER_gz_to_uncompressed]) Handler '_default_' assigned using 'HANDLER_ASSIGNMENT_METHODS.DB_SKIP_LOCKED' assignment method galaxy.tools.actions INFO 2024-02-23 14:38:19,600 [pN:main.1,p:78709,tN:WSGI_7] Handled output named adaptor_report for tool ncbi_fcs_adaptor (4.755 ms) galaxy.tools.actions INFO 2024-02-23 14:38:19,603 [pN:main.1,p:78709,tN:WSGI_7] Handled output named clean_fasta for tool ncbi_fcs_adaptor (2.600 ms) galaxy.tools.actions INFO 2024-02-23 14:38:19,611 [pN:main.1,p:78709,tN:WSGI_7] Added output datasets to history (7.890 ms) galaxy.tools.actions INFO 2024-02-23 14:38:19,612 [pN:main.1,p:78709,tN:WSGI_7] Setup for job Job[unflushed,tool_id=ncbi_fcs_adaptor] complete, ready to be enqueued (1.323 ms) galaxy.tools.execute DEBUG 2024-02-23 14:38:19,613 [pN:main.1,p:78709,tN:WSGI_7] Tool ncbi_fcs_adaptor created job None (102.802 ms) galaxy.web_stack.handlers INFO 2024-02-23 14:38:19,632 [pN:main.1,p:78709,tN:WSGI_7] (Job[id=3,tool_id=ncbi_fcs_adaptor]) Handler '_default_' assigned using 'HANDLER_ASSIGNMENT_METHODS.DB_SKIP_LOCKED' assignment method galaxy.tools.execute DEBUG 2024-02-23 14:38:19,636 [pN:main.1,p:78709,tN:WSGI_7] Created 1 job(s) for tool ncbi_fcs_adaptor request (128.259 ms) uvicorn.access INFO 2024-02-23 14:38:19,648 [pN:main.1,p:78709,tN:MainThread] 127.0.0.1:40108 - "POST /api/tools HTTP/1.1" 200 uvicorn.access INFO 2024-02-23 14:38:19,678 [pN:main.1,p:78709,tN:MainThread] 127.0.0.1:40108 - "GET /history/current_history_json?since=2024-02-23T19:31:05.000216 HTTP/1.1" 200 uvicorn.access INFO 2024-02-23 14:38:19,732 [pN:main.1,p:78709,tN:MainThread] 127.0.0.1:40108 - "GET /api/histories/e94ef2b25ec88be9/contents?v=dev&limit=1000&q=update_time-ge&qv=2024-02-23T19:31:05.566Z HTTP/1.1" 200 galaxy.jobs.mapper DEBUG 2024-02-23 14:38:19,766 [pN:main.1,p:78709,tN:JobHandlerQueue.monitor_thread] (2) Mapped job to destination id: docker_local galaxy.jobs.handler DEBUG 2024-02-23 14:38:19,773 [pN:main.1,p:78709,tN:JobHandlerQueue.monitor_thread] (2) Dispatching to local runner galaxy.jobs DEBUG 2024-02-23 14:38:19,800 [pN:main.1,p:78709,tN:JobHandlerQueue.monitor_thread] (2) Persisting job destination (destination id: docker_local) uvicorn.access INFO 2024-02-23 14:38:19,828 [pN:main.1,p:78709,tN:MainThread] 127.0.0.1:40108 - "GET /api/users/e94ef2b25ec88be9 HTTP/1.1" 200 uvicorn.access INFO 2024-02-23 14:38:19,856 [pN:main.1,p:78709,tN:MainThread] 127.0.0.1:40112 - "GET /api/histories/e94ef2b25ec88be9/contents?v=dev&order=hid&offset=0&limit=100&q=deleted&qv=false&q=visible&qv=true HTTP/1.1" 200 galaxy.jobs DEBUG 2024-02-23 14:38:19,858 [pN:main.1,p:78709,tN:JobHandlerQueue.monitor_thread] (2) Working directory for job is: /tmp/tmpqrlh6ih1/job_working_directory/000/2 galaxy.jobs.runners DEBUG 2024-02-23 14:38:19,870 [pN:main.1,p:78709,tN:JobHandlerQueue.monitor_thread] Job [2] queued (96.880 ms) galaxy.jobs.handler INFO 2024-02-23 14:38:19,884 [pN:main.1,p:78709,tN:JobHandlerQueue.monitor_thread] (2) Job dispatched galaxy.jobs DEBUG 2024-02-23 14:38:19,938 [pN:main.1,p:78709,tN:LocalRunner.work_thread-3] Job wrapper for Job [2] prepared (47.790 ms) galaxy.tool_util.deps.containers INFO 2024-02-23 14:38:19,939 [pN:main.1,p:78709,tN:LocalRunner.work_thread-3] Checking with container resolver [ExplicitContainerResolver[]] found description [None] galaxy.tool_util.deps.container_resolvers.mulled DEBUG 2024-02-23 14:38:19,939 [pN:main.1,p:78709,tN:LocalRunner.work_thread-3] Image name for tool CONVERTER_gz_to_uncompressed: no targets galaxy.tool_util.deps.containers INFO 2024-02-23 14:38:19,939 [pN:main.1,p:78709,tN:LocalRunner.work_thread-3] Checking with container resolver [CachedMulledDockerContainerResolver[namespace=biocontainers]] found description [None] galaxy.tool_util.deps.container_resolvers.mulled DEBUG 2024-02-23 14:38:19,939 [pN:main.1,p:78709,tN:LocalRunner.work_thread-3] Image name for tool CONVERTER_gz_to_uncompressed: no targets galaxy.tool_util.deps.containers INFO 2024-02-23 14:38:19,939 [pN:main.1,p:78709,tN:LocalRunner.work_thread-3] Checking with container resolver [CachedMulledDockerContainerResolver[namespace=local]] found description [None] galaxy.tool_util.deps.container_resolvers.mulled DEBUG 2024-02-23 14:38:19,939 [pN:main.1,p:78709,tN:LocalRunner.work_thread-3] Image name for tool CONVERTER_gz_to_uncompressed: no targets galaxy.tool_util.deps.containers INFO 2024-02-23 14:38:19,939 [pN:main.1,p:78709,tN:LocalRunner.work_thread-3] Checking with container resolver [MulledDockerContainerResolver[namespace=biocontainers]] found description [None] galaxy.tool_util.deps.container_resolvers.mulled DEBUG 2024-02-23 14:38:19,939 [pN:main.1,p:78709,tN:LocalRunner.work_thread-3] Image name for tool CONVERTER_gz_to_uncompressed: no targets galaxy.tool_util.deps.containers INFO 2024-02-23 14:38:19,939 [pN:main.1,p:78709,tN:LocalRunner.work_thread-3] Checking with container resolver [BuildDockerContainerResolver[namespace=local]] found description [None] galaxy.jobs.command_factory INFO 2024-02-23 14:38:19,971 [pN:main.1,p:78709,tN:LocalRunner.work_thread-3] Built script [/tmp/tmpqrlh6ih1/job_working_directory/000/2/tool_script.sh] for tool command [cp '/tmp/tmpqrlh6ih1/job_working_directory/000/2/configs/tmputamy64b' 'galaxy.json' && gzip -dcf '/tmp/tmpqrlh6ih1/files/b/2/5/dataset_b25039b4-189c-4c5a-9380-009d996fbf23.dat' > '/tmp/tmpqrlh6ih1/job_working_directory/000/2/outputs/dataset_9eacd1c3-39c4-4284-879f-5d377c761f3e.dat'] galaxy.jobs.runners DEBUG 2024-02-23 14:38:20,010 [pN:main.1,p:78709,tN:LocalRunner.work_thread-3] (2) command is: mkdir -p working outputs configs if [ -d _working ]; then rm -rf working/ outputs/ configs/; cp -R _working working; cp -R _outputs outputs; cp -R _configs configs else cp -R working _working; cp -R outputs _outputs; cp -R configs _configs fi cd working; /bin/bash /tmp/tmpqrlh6ih1/job_working_directory/000/2/tool_script.sh > '../outputs/tool_stdout' 2> '../outputs/tool_stderr'; return_code=$?; echo $return_code > /tmp/tmpqrlh6ih1/job_working_directory/000/2/galaxy_2.ec; cd '/tmp/tmpqrlh6ih1/job_working_directory/000/2'; [ "$GALAXY_VIRTUAL_ENV" = "None" ] && GALAXY_VIRTUAL_ENV="$_GALAXY_VIRTUAL_ENV"; _galaxy_setup_environment True; python metadata/set.py; sh -c "exit $return_code" galaxy.jobs.runners.local DEBUG 2024-02-23 14:38:20,036 [pN:main.1,p:78709,tN:LocalRunner.work_thread-3] (2) executing job script: /tmp/tmpqrlh6ih1/job_working_directory/000/2/galaxy_2.sh uvicorn.access INFO 2024-02-23 14:38:22,837 [pN:main.1,p:78709,tN:MainThread] 127.0.0.1:40116 - "GET /history/current_history_json?since=2024-02-23T19:38:19.000622 HTTP/1.1" 200 uvicorn.access INFO 2024-02-23 14:38:22,871 [pN:main.1,p:78709,tN:MainThread] 127.0.0.1:40116 - "GET /api/histories/e94ef2b25ec88be9/contents?v=dev&limit=1000&q=update_time-ge&qv=2024-02-23T19:38:19.686Z HTTP/1.1" 200 uvicorn.access INFO 2024-02-23 14:38:22,921 [pN:main.1,p:78709,tN:MainThread] 127.0.0.1:40116 - "GET /api/users/e94ef2b25ec88be9 HTTP/1.1" 200 uvicorn.access INFO 2024-02-23 14:38:22,946 [pN:main.1,p:78709,tN:MainThread] 127.0.0.1:40118 - "GET /api/histories/e94ef2b25ec88be9/contents?v=dev&order=hid&offset=0&limit=100&q=deleted&qv=false&q=visible&qv=true HTTP/1.1" 200 galaxy.jobs.runners.util.process_groups DEBUG 2024-02-23 14:38:23,760 [pN:main.1,p:78709,tN:LocalRunner.work_thread-3] check_pg(): No process found in process group 79031 galaxy.jobs.runners.local DEBUG 2024-02-23 14:38:23,761 [pN:main.1,p:78709,tN:LocalRunner.work_thread-3] execution finished: /tmp/tmpqrlh6ih1/job_working_directory/000/2/galaxy_2.sh galaxy.jobs DEBUG 2024-02-23 14:38:23,783 [pN:main.1,p:78709,tN:LocalRunner.work_thread-3] finish(): Moved /tmp/tmpqrlh6ih1/job_working_directory/000/2/outputs/dataset_9eacd1c3-39c4-4284-879f-5d377c761f3e.dat to /tmp/tmpqrlh6ih1/files/9/e/a/dataset_9eacd1c3-39c4-4284-879f-5d377c761f3e.dat galaxy.tool_util.provided_metadata DEBUG 2024-02-23 14:38:23,790 [pN:main.1,p:78709,tN:LocalRunner.work_thread-3] unnamed outputs [{'output1': {'name': 'fcsadaptor_prok_test.fa uncompressed', 'ext': 'fasta'}}] galaxy.model.metadata DEBUG 2024-02-23 14:38:23,795 [pN:main.1,p:78709,tN:LocalRunner.work_thread-3] loading metadata from file for: HistoryDatasetAssociation 2 galaxy.jobs DEBUG 2024-02-23 14:38:23,823 [pN:main.1,p:78709,tN:LocalRunner.work_thread-3] job_wrapper.finish for job 2 executed (45.391 ms) galaxy.jobs.mapper DEBUG 2024-02-23 14:38:23,983 [pN:main.1,p:78709,tN:JobHandlerQueue.monitor_thread] (3) Mapped job to destination id: docker_local galaxy.jobs.handler DEBUG 2024-02-23 14:38:23,986 [pN:main.1,p:78709,tN:JobHandlerQueue.monitor_thread] (3) Dispatching to local runner galaxy.jobs DEBUG 2024-02-23 14:38:23,991 [pN:main.1,p:78709,tN:JobHandlerQueue.monitor_thread] (3) Persisting job destination (destination id: docker_local) galaxy.jobs DEBUG 2024-02-23 14:38:23,996 [pN:main.1,p:78709,tN:JobHandlerQueue.monitor_thread] (3) Working directory for job is: /tmp/tmpqrlh6ih1/job_working_directory/000/3 galaxy.jobs.runners DEBUG 2024-02-23 14:38:24,002 [pN:main.1,p:78709,tN:JobHandlerQueue.monitor_thread] Job [3] queued (15.947 ms) galaxy.jobs.handler INFO 2024-02-23 14:38:24,010 [pN:main.1,p:78709,tN:JobHandlerQueue.monitor_thread] (3) Job dispatched galaxy.security.object_wrapper WARNING 2024-02-23 14:38:24,049 [pN:main.1,p:78709,tN:LocalRunner.work_thread-2] Unable to create dynamic subclass SafeStringWrapper__galaxy.model.none_like.None__NoneType__NotImplementedType__Number__SafeStringWrapper__ToolParameterValueWrapper__bool__bytearray__ellipsis for <class 'galaxy.model.none_like.NoneDataset'>, None: type() doesn't support MRO entry resolution; use types.new_class() galaxy.jobs DEBUG 2024-02-23 14:38:24,062 [pN:main.1,p:78709,tN:LocalRunner.work_thread-2] Job wrapper for Job [3] prepared (43.024 ms) galaxy.tool_util.deps.containers INFO 2024-02-23 14:38:24,062 [pN:main.1,p:78709,tN:LocalRunner.work_thread-2] Checking with container resolver [ExplicitContainerResolver[]] found description [ContainerDescription[identifier=ncbi/fcs-adaptor:0.5.0,type=docker]] galaxy.jobs.command_factory INFO 2024-02-23 14:38:24,104 [pN:main.1,p:78709,tN:LocalRunner.work_thread-2] Built script [/tmp/tmpqrlh6ih1/job_working_directory/000/3/tool_script.sh] for tool command [/app/fcs/bin/av_screen_x -o "$(pwd)" '--prok' '/tmp/tmpqrlh6ih1/files/9/e/a/dataset_9eacd1c3-39c4-4284-879f-5d377c761f3e.dat'] galaxy.jobs.runners DEBUG 2024-02-23 14:38:24,149 [pN:main.1,p:78709,tN:LocalRunner.work_thread-2] (3) command is: mkdir -p working outputs configs if [ -d _working ]; then rm -rf working/ outputs/ configs/; cp -R _working working; cp -R _outputs outputs; cp -R _configs configs else cp -R working _working; cp -R outputs _outputs; cp -R configs _configs fi cd working; _on_exit() { docker kill ddbfcc5b6a8b487cbddefc4091d43dcb &> /dev/null } trap _on_exit EXIT docker inspect ncbi/fcs-adaptor:0.5.0 > /dev/null 2>&1 [ $? -ne 0 ] && docker pull ncbi/fcs-adaptor:0.5.0 > /dev/null 2>&1 docker run -e "GALAXY_SLOTS=$GALAXY_SLOTS" -e "GALAXY_MEMORY_MB=$GALAXY_MEMORY_MB" -e "GALAXY_MEMORY_MB_PER_SLOT=$GALAXY_MEMORY_MB_PER_SLOT" -e "HOME=$HOME" -e "_GALAXY_JOB_HOME_DIR=$_GALAXY_JOB_HOME_DIR" -e "_GALAXY_JOB_TMP_DIR=$_GALAXY_JOB_TMP_DIR" -e "TMPDIR=$TMPDIR" -e "TMP=$TMP" -e "TEMP=$TEMP" --name ddbfcc5b6a8b487cbddefc4091d43dcb -v "$_GALAXY_JOB_TMP_DIR:$_GALAXY_JOB_TMP_DIR:rw" -v "$TMPDIR:$TMPDIR:rw" -v "$TMP:$TMP:rw" -v "$TEMP:$TEMP:rw" -v /scratch/rico/galaxy:/scratch/rico/galaxy:ro -v /scratch/rico/galaxytools/tools/ncbi_fcs_adaptor:/scratch/rico/galaxytools/tools/ncbi_fcs_adaptor:ro -v /tmp/tmpqrlh6ih1/job_working_directory/000/3:/tmp/tmpqrlh6ih1/job_working_directory/000/3:ro -v /tmp/tmpqrlh6ih1/job_working_directory/000/3/outputs:/tmp/tmpqrlh6ih1/job_working_directory/000/3/outputs:rw -v "$_GALAXY_JOB_HOME_DIR:$_GALAXY_JOB_HOME_DIR:rw" -v /tmp/tmpqrlh6ih1/job_working_directory/000/3/working:/tmp/tmpqrlh6ih1/job_working_directory/000/3/working:rw -v /tmp/tmpqrlh6ih1/files:/tmp/tmpqrlh6ih1/files:ro -v /scratch/rico/galaxy/tool-data:/scratch/rico/galaxy/tool-data:ro --cpus ${GALAXY_SLOTS:-1} -w /tmp/tmpqrlh6ih1/job_working_directory/000/3/working --rm --user 1028:1028 ncbi/fcs-adaptor:0.5.0 /bin/sh /tmp/tmpqrlh6ih1/job_working_directory/000/3/tool_script.sh > '../outputs/tool_stdout' 2> '../outputs/tool_stderr'; return_code=$?; echo $return_code > /tmp/tmpqrlh6ih1/job_working_directory/000/3/galaxy_3.ec; if [ -f "/tmp/tmpqrlh6ih1/job_working_directory/000/3/working/fcs_adaptor_report.txt" ] ; then cp "/tmp/tmpqrlh6ih1/job_working_directory/000/3/working/fcs_adaptor_report.txt" "/tmp/tmpqrlh6ih1/job_working_directory/000/3/outputs/dataset_baab9cb3-daf7-4634-b244-35ef4dfc423e.dat" ; fi; if [ -f "/tmp/tmpqrlh6ih1/job_working_directory/000/3/working/cleaned_sequences/"*".dat" ] ; then cp "/tmp/tmpqrlh6ih1/job_working_directory/000/3/working/cleaned_sequences/"*".dat" "/tmp/tmpqrlh6ih1/job_working_directory/000/3/outputs/dataset_6151fe42-edab-4c01-b97a-3428cd1f28b4.dat" ; fi; cd '/tmp/tmpqrlh6ih1/job_working_directory/000/3'; [ "$GALAXY_VIRTUAL_ENV" = "None" ] && GALAXY_VIRTUAL_ENV="$_GALAXY_VIRTUAL_ENV"; _galaxy_setup_environment True; python metadata/set.py; sh -c "exit $return_code" galaxy.jobs.runners.local DEBUG 2024-02-23 14:38:24,173 [pN:main.1,p:78709,tN:LocalRunner.work_thread-2] (3) executing job script: /tmp/tmpqrlh6ih1/job_working_directory/000/3/galaxy_3.sh uvicorn.access INFO 2024-02-23 14:38:25,943 [pN:main.1,p:78709,tN:MainThread] 127.0.0.1:33910 - "GET /history/current_history_json?since=2024-02-23T19:38:20.000081 HTTP/1.1" 200 uvicorn.access INFO 2024-02-23 14:38:26,002 [pN:main.1,p:78709,tN:MainThread] 127.0.0.1:33910 - "GET /api/histories/e94ef2b25ec88be9/contents?v=dev&limit=1000&q=update_time-ge&qv=2024-02-23T19:38:22.844Z HTTP/1.1" 200 uvicorn.access INFO 2024-02-23 14:38:26,102 [pN:main.1,p:78709,tN:MainThread] 127.0.0.1:33910 - "GET /api/users/e94ef2b25ec88be9 HTTP/1.1" 200 uvicorn.access INFO 2024-02-23 14:38:26,133 [pN:main.1,p:78709,tN:MainThread] 127.0.0.1:33920 - "GET /api/histories/e94ef2b25ec88be9/contents?v=dev&order=hid&offset=0&limit=100&q=deleted&qv=false&q=visible&qv=true HTTP/1.1" 200 uvicorn.access INFO 2024-02-23 14:38:27,588 [pN:main.1,p:78709,tN:MainThread] 127.0.0.1:33920 - "GET /api/entry_points?running=true HTTP/1.1" 200 uvicorn.access INFO 2024-02-23 14:38:29,108 [pN:main.1,p:78709,tN:MainThread] 127.0.0.1:33922 - "GET /history/current_history_json?since=2024-02-23T19:38:24.000221 HTTP/1.1" 200 uvicorn.access INFO 2024-02-23 14:38:29,128 [pN:main.1,p:78709,tN:MainThread] 127.0.0.1:33920 - "GET /api/datasets/b35bb5a57277f2b7?view=detailed HTTP/1.1" 200 uvicorn.access INFO 2024-02-23 14:38:30,842 [pN:main.1,p:78709,tN:MainThread] 127.0.0.1:33920 - "GET /api/jobs/b35bb5a57277f2b7/build_for_rerun HTTP/1.1" 200 uvicorn.access INFO 2024-02-23 14:38:30,927 [pN:main.1,p:78709,tN:MainThread] 127.0.0.1:33920 - "POST /api/tools/ncbi_fcs_adaptor/build HTTP/1.1" 200 uvicorn.access INFO 2024-02-23 14:38:32,135 [pN:main.1,p:78709,tN:MainThread] 127.0.0.1:33920 - "GET /history/current_history_json?since=2024-02-23T19:38:24.000221 HTTP/1.1" 200 galaxy.tools INFO 2024-02-23 14:38:34,946 [pN:main.1,p:78709,tN:WSGI_8] Validated and populated state for tool request (4.404 ms) galaxy.tools.actions INFO 2024-02-23 14:38:34,953 [pN:main.1,p:78709,tN:WSGI_8] Handled output named adaptor_report for tool ncbi_fcs_adaptor (0.981 ms) galaxy.tools.actions INFO 2024-02-23 14:38:34,953 [pN:main.1,p:78709,tN:WSGI_8] Handled output named clean_fasta for tool ncbi_fcs_adaptor (0.660 ms) galaxy.tools.actions DEBUG 2024-02-23 14:38:34,953 [pN:main.1,p:78709,tN:WSGI_8] Tool ncbi_fcs_adaptor output adaptor_log: dataset output filter (advanced['optional_log'] is not None and 'adaptor_log' in advanced['optional_log'].split(',')) failed: 'list' object has no attribute 'split' galaxy.tools.actions INFO 2024-02-23 14:38:34,956 [pN:main.1,p:78709,tN:WSGI_8] Handled output named adaptor_log for tool ncbi_fcs_adaptor (2.348 ms) galaxy.tools.actions DEBUG 2024-02-23 14:38:34,956 [pN:main.1,p:78709,tN:WSGI_8] Tool ncbi_fcs_adaptor output validate_fasta_log: dataset output filter (advanced['optional_log'] is not None and 'validate_fasta_log' in advanced['optional_log'].split(',')) failed: 'list' object has no attribute 'split' galaxy.tools.actions INFO 2024-02-23 14:38:34,958 [pN:main.1,p:78709,tN:WSGI_8] Handled output named validate_fasta_log for tool ncbi_fcs_adaptor (2.229 ms) galaxy.tools.actions INFO 2024-02-23 14:38:34,966 [pN:main.1,p:78709,tN:WSGI_8] Added output datasets to history (7.143 ms) galaxy.tools.actions INFO 2024-02-23 14:38:34,968 [pN:main.1,p:78709,tN:WSGI_8] Setup for job Job[unflushed,tool_id=ncbi_fcs_adaptor] complete, ready to be enqueued (1.981 ms) galaxy.tools.execute DEBUG 2024-02-23 14:38:34,968 [pN:main.1,p:78709,tN:WSGI_8] Tool ncbi_fcs_adaptor created job None (19.954 ms) galaxy.web_stack.handlers INFO 2024-02-23 14:38:34,988 [pN:main.1,p:78709,tN:WSGI_8] (Job[id=4,tool_id=ncbi_fcs_adaptor]) Handler '_default_' assigned using 'HANDLER_ASSIGNMENT_METHODS.DB_SKIP_LOCKED' assignment method galaxy.tools.execute DEBUG 2024-02-23 14:38:34,991 [pN:main.1,p:78709,tN:WSGI_8] Created 1 job(s) for tool ncbi_fcs_adaptor request (45.036 ms) uvicorn.access INFO 2024-02-23 14:38:35,007 [pN:main.1,p:78709,tN:MainThread] 127.0.0.1:33928 - "POST /api/tools HTTP/1.1" 200 uvicorn.access INFO 2024-02-23 14:38:35,036 [pN:main.1,p:78709,tN:MainThread] 127.0.0.1:33928 - "GET /history/current_history_json?since=2024-02-23T19:38:24.000221 HTTP/1.1" 200 uvicorn.access INFO 2024-02-23 14:38:35,092 [pN:main.1,p:78709,tN:MainThread] 127.0.0.1:33928 - "GET /api/histories/e94ef2b25ec88be9/contents?v=dev&limit=1000&q=update_time-ge&qv=2024-02-23T19:38:25.956Z&details=b35bb5a57277f2b7 HTTP/1.1" 200 uvicorn.access INFO 2024-02-23 14:38:35,135 [pN:main.1,p:78709,tN:MainThread] 127.0.0.1:33928 - "GET /api/users/e94ef2b25ec88be9 HTTP/1.1" 200 uvicorn.access INFO 2024-02-23 14:38:35,156 [pN:main.1,p:78709,tN:MainThread] 127.0.0.1:33940 - "GET /api/histories/e94ef2b25ec88be9/contents?v=dev&order=hid&offset=0&limit=100&q=deleted&qv=false&q=visible&qv=true HTTP/1.1" 200 galaxy.jobs.mapper DEBUG 2024-02-23 14:38:35,297 [pN:main.1,p:78709,tN:JobHandlerQueue.monitor_thread] (4) Mapped job to destination id: docker_local galaxy.jobs.handler DEBUG 2024-02-23 14:38:35,300 [pN:main.1,p:78709,tN:JobHandlerQueue.monitor_thread] (4) Dispatching to local runner galaxy.jobs DEBUG 2024-02-23 14:38:35,305 [pN:main.1,p:78709,tN:JobHandlerQueue.monitor_thread] (4) Persisting job destination (destination id: docker_local) galaxy.jobs DEBUG 2024-02-23 14:38:35,310 [pN:main.1,p:78709,tN:JobHandlerQueue.monitor_thread] (4) Working directory for job is: /tmp/tmpqrlh6ih1/job_working_directory/000/4 galaxy.jobs.runners DEBUG 2024-02-23 14:38:35,316 [pN:main.1,p:78709,tN:JobHandlerQueue.monitor_thread] Job [4] queued (15.787 ms) galaxy.jobs.handler INFO 2024-02-23 14:38:35,323 [pN:main.1,p:78709,tN:JobHandlerQueue.monitor_thread] (4) Job dispatched galaxy.jobs DEBUG 2024-02-23 14:38:35,369 [pN:main.1,p:78709,tN:LocalRunner.work_thread-0] Job wrapper for Job [4] prepared (36.045 ms) galaxy.tool_util.deps.containers INFO 2024-02-23 14:38:35,369 [pN:main.1,p:78709,tN:LocalRunner.work_thread-0] Checking with container resolver [ExplicitContainerResolver[]] found description [ContainerDescription[identifier=ncbi/fcs-adaptor:0.5.0,type=docker]] galaxy.jobs.command_factory INFO 2024-02-23 14:38:35,400 [pN:main.1,p:78709,tN:LocalRunner.work_thread-0] Built script [/tmp/tmpqrlh6ih1/job_working_directory/000/4/tool_script.sh] for tool command [/app/fcs/bin/av_screen_x -o "$(pwd)" '--prok' '/tmp/tmpqrlh6ih1/files/9/e/a/dataset_9eacd1c3-39c4-4284-879f-5d377c761f3e.dat'] galaxy.jobs.runners DEBUG 2024-02-23 14:38:35,453 [pN:main.1,p:78709,tN:LocalRunner.work_thread-0] (4) command is: mkdir -p working outputs configs if [ -d _working ]; then rm -rf working/ outputs/ configs/; cp -R _working working; cp -R _outputs outputs; cp -R _configs configs else cp -R working _working; cp -R outputs _outputs; cp -R configs _configs fi cd working; _on_exit() { docker kill 0ed49ce4b7a6495fb6c27a5f2b8c6565 &> /dev/null } trap _on_exit EXIT docker inspect ncbi/fcs-adaptor:0.5.0 > /dev/null 2>&1 [ $? -ne 0 ] && docker pull ncbi/fcs-adaptor:0.5.0 > /dev/null 2>&1 docker run -e "GALAXY_SLOTS=$GALAXY_SLOTS" -e "GALAXY_MEMORY_MB=$GALAXY_MEMORY_MB" -e "GALAXY_MEMORY_MB_PER_SLOT=$GALAXY_MEMORY_MB_PER_SLOT" -e "HOME=$HOME" -e "_GALAXY_JOB_HOME_DIR=$_GALAXY_JOB_HOME_DIR" -e "_GALAXY_JOB_TMP_DIR=$_GALAXY_JOB_TMP_DIR" -e "TMPDIR=$TMPDIR" -e "TMP=$TMP" -e "TEMP=$TEMP" --name 0ed49ce4b7a6495fb6c27a5f2b8c6565 -v "$_GALAXY_JOB_TMP_DIR:$_GALAXY_JOB_TMP_DIR:rw" -v "$TMPDIR:$TMPDIR:rw" -v "$TMP:$TMP:rw" -v "$TEMP:$TEMP:rw" -v /scratch/rico/galaxy:/scratch/rico/galaxy:ro -v /scratch/rico/galaxytools/tools/ncbi_fcs_adaptor:/scratch/rico/galaxytools/tools/ncbi_fcs_adaptor:ro -v /tmp/tmpqrlh6ih1/job_working_directory/000/4:/tmp/tmpqrlh6ih1/job_working_directory/000/4:ro -v /tmp/tmpqrlh6ih1/job_working_directory/000/4/outputs:/tmp/tmpqrlh6ih1/job_working_directory/000/4/outputs:rw -v "$_GALAXY_JOB_HOME_DIR:$_GALAXY_JOB_HOME_DIR:rw" -v /tmp/tmpqrlh6ih1/job_working_directory/000/4/working:/tmp/tmpqrlh6ih1/job_working_directory/000/4/working:rw -v /tmp/tmpqrlh6ih1/files:/tmp/tmpqrlh6ih1/files:ro -v /scratch/rico/galaxy/tool-data:/scratch/rico/galaxy/tool-data:ro --cpus ${GALAXY_SLOTS:-1} -w /tmp/tmpqrlh6ih1/job_working_directory/000/4/working --rm --user 1028:1028 ncbi/fcs-adaptor:0.5.0 /bin/sh /tmp/tmpqrlh6ih1/job_working_directory/000/4/tool_script.sh > '../outputs/tool_stdout' 2> '../outputs/tool_stderr'; return_code=$?; echo $return_code > /tmp/tmpqrlh6ih1/job_working_directory/000/4/galaxy_4.ec; if [ -f "/tmp/tmpqrlh6ih1/job_working_directory/000/4/working/fcs_adaptor_report.txt" ] ; then cp "/tmp/tmpqrlh6ih1/job_working_directory/000/4/working/fcs_adaptor_report.txt" "/tmp/tmpqrlh6ih1/job_working_directory/000/4/outputs/dataset_41844168-8b86-45ce-a8b8-c8552139307c.dat" ; fi; if [ -f "/tmp/tmpqrlh6ih1/job_working_directory/000/4/working/cleaned_sequences/"*".dat" ] ; then cp "/tmp/tmpqrlh6ih1/job_working_directory/000/4/working/cleaned_sequences/"*".dat" "/tmp/tmpqrlh6ih1/job_working_directory/000/4/outputs/dataset_41da1090-710e-4c25-9a3d-97472671c387.dat" ; fi; if [ -f "/tmp/tmpqrlh6ih1/job_working_directory/000/4/working/fcs_adaptor.log" ] ; then cp "/tmp/tmpqrlh6ih1/job_working_directory/000/4/working/fcs_adaptor.log" "/tmp/tmpqrlh6ih1/job_working_directory/000/4/outputs/dataset_5c65272e-4fbd-4386-af7d-d8cbdd90242a.dat" ; fi; if [ -f "/tmp/tmpqrlh6ih1/job_working_directory/000/4/working/validate_fasta.txt" ] ; then cp "/tmp/tmpqrlh6ih1/job_working_directory/000/4/working/validate_fasta.txt" "/tmp/tmpqrlh6ih1/job_working_directory/000/4/outputs/dataset_92e5dc26-302e-4dbd-bd15-8050babfdff4.dat" ; fi; cd '/tmp/tmpqrlh6ih1/job_working_directory/000/4'; [ "$GALAXY_VIRTUAL_ENV" = "None" ] && GALAXY_VIRTUAL_ENV="$_GALAXY_VIRTUAL_ENV"; _galaxy_setup_environment True; python metadata/set.py; sh -c "exit $return_code" galaxy.jobs.runners.local DEBUG 2024-02-23 14:38:35,474 [pN:main.1,p:78709,tN:LocalRunner.work_thread-0] (4) executing job script: /tmp/tmpqrlh6ih1/job_working_directory/000/4/galaxy_4.sh uvicorn.access INFO 2024-02-23 14:38:37,597 [pN:main.1,p:78709,tN:MainThread] 127.0.0.1:40730 - "GET /api/entry_points?running=true HTTP/1.1" 200 uvicorn.access INFO 2024-02-23 14:38:38,198 [pN:main.1,p:78709,tN:MainThread] 127.0.0.1:40730 - "GET /history/current_history_json?since=2024-02-23T19:38:34.000978 HTTP/1.1" 200 uvicorn.access INFO 2024-02-23 14:38:38,234 [pN:main.1,p:78709,tN:MainThread] 127.0.0.1:40730 - "GET /api/histories/e94ef2b25ec88be9/contents?v=dev&limit=1000&q=update_time-ge&qv=2024-02-23T19:38:35.061Z&details=b35bb5a57277f2b7 HTTP/1.1" 200 uvicorn.access INFO 2024-02-23 14:38:38,279 [pN:main.1,p:78709,tN:MainThread] 127.0.0.1:40730 - "GET /api/users/e94ef2b25ec88be9 HTTP/1.1" 200 uvicorn.access INFO 2024-02-23 14:38:38,301 [pN:main.1,p:78709,tN:MainThread] 127.0.0.1:40740 - "GET /api/histories/e94ef2b25ec88be9/contents?v=dev&order=hid&offset=0&limit=100&q=deleted&qv=false&q=visible&qv=true HTTP/1.1" 200 uvicorn.access INFO 2024-02-23 14:38:41,295 [pN:main.1,p:78709,tN:MainThread] 127.0.0.1:40750 - "GET /history/current_history_json?since=2024-02-23T19:38:35.000518 HTTP/1.1" 200 uvicorn.access INFO 2024-02-23 14:38:44,323 [pN:main.1,p:78709,tN:MainThread] 127.0.0.1:40762 - "GET /history/current_history_json?since=2024-02-23T19:38:35.000518 HTTP/1.1" 200 uvicorn.access INFO 2024-02-23 14:38:47,347 [pN:main.1,p:78709,tN:MainThread] 127.0.0.1:47208 - "GET /history/current_history_json?since=2024-02-23T19:38:35.000518 HTTP/1.1" 200 uvicorn.access INFO 2024-02-23 14:38:47,597 [pN:main.1,p:78709,tN:MainThread] 127.0.0.1:47208 - "GET /api/entry_points?running=true HTTP/1.1" 200 uvicorn.access INFO 2024-02-23 14:38:50,375 [pN:main.1,p:78709,tN:MainThread] 127.0.0.1:47224 - "GET /history/current_history_json?since=2024-02-23T19:38:35.000518 HTTP/1.1" 200 uvicorn.access INFO 2024-02-23 14:38:53,406 [pN:main.1,p:78709,tN:MainThread] 127.0.0.1:47236 - "GET /history/current_history_json?since=2024-02-23T19:38:35.000518 HTTP/1.1" 200 uvicorn.access INFO 2024-02-23 14:38:56,435 [pN:main.1,p:78709,tN:MainThread] 127.0.0.1:55260 - "GET /history/current_history_json?since=2024-02-23T19:38:35.000518 HTTP/1.1" 200 uvicorn.access INFO 2024-02-23 14:38:57,596 [pN:main.1,p:78709,tN:MainThread] 127.0.0.1:55260 - "GET /api/entry_points?running=true HTTP/1.1" 200 uvicorn.access INFO 2024-02-23 14:38:59,466 [pN:main.1,p:78709,tN:MainThread] 127.0.0.1:55260 - "GET /history/current_history_json?since=2024-02-23T19:38:35.000518 HTTP/1.1" 200 uvicorn.access INFO 2024-02-23 14:39:02,494 [pN:main.1,p:78709,tN:MainThread] 127.0.0.1:55264 - "GET /history/current_history_json?since=2024-02-23T19:38:35.000518 HTTP/1.1" 200 uvicorn.access INFO 2024-02-23 14:39:05,526 [pN:main.1,p:78709,tN:MainThread] 127.0.0.1:55266 - "GET /history/current_history_json?since=2024-02-23T19:38:35.000518 HTTP/1.1" 200 uvicorn.access INFO 2024-02-23 14:39:07,597 [pN:main.1,p:78709,tN:MainThread] 127.0.0.1:37544 - "GET /api/entry_points?running=true HTTP/1.1" 200 uvicorn.access INFO 2024-02-23 14:39:08,555 [pN:main.1,p:78709,tN:MainThread] 127.0.0.1:37544 - "GET /history/current_history_json?since=2024-02-23T19:38:35.000518 HTTP/1.1" 200 uvicorn.access INFO 2024-02-23 14:39:11,592 [pN:main.1,p:78709,tN:MainThread] 127.0.0.1:37560 - "GET /history/current_history_json?since=2024-02-23T19:38:35.000518 HTTP/1.1" 200 uvicorn.access INFO 2024-02-23 14:39:14,624 [pN:main.1,p:78709,tN:MainThread] 127.0.0.1:37564 - "GET /history/current_history_json?since=2024-02-23T19:38:35.000518 HTTP/1.1" 200 galaxy.jobs.runners.util.process_groups DEBUG 2024-02-23 14:39:15,076 [pN:main.1,p:78709,tN:LocalRunner.work_thread-2] check_pg(): No process found in process group 79120 galaxy.jobs.runners.local DEBUG 2024-02-23 14:39:15,077 [pN:main.1,p:78709,tN:LocalRunner.work_thread-2] execution finished: /tmp/tmpqrlh6ih1/job_working_directory/000/3/galaxy_3.sh galaxy.jobs DEBUG 2024-02-23 14:39:15,102 [pN:main.1,p:78709,tN:LocalRunner.work_thread-2] finish(): Moved /tmp/tmpqrlh6ih1/job_working_directory/000/3/outputs/dataset_baab9cb3-daf7-4634-b244-35ef4dfc423e.dat to /tmp/tmpqrlh6ih1/files/b/a/a/dataset_baab9cb3-daf7-4634-b244-35ef4dfc423e.dat galaxy.jobs DEBUG 2024-02-23 14:39:15,102 [pN:main.1,p:78709,tN:LocalRunner.work_thread-2] finish(): Moved /tmp/tmpqrlh6ih1/job_working_directory/000/3/outputs/dataset_6151fe42-edab-4c01-b97a-3428cd1f28b4.dat to /tmp/tmpqrlh6ih1/files/6/1/5/dataset_6151fe42-edab-4c01-b97a-3428cd1f28b4.dat galaxy.model.metadata DEBUG 2024-02-23 14:39:15,113 [pN:main.1,p:78709,tN:LocalRunner.work_thread-2] loading metadata from file for: HistoryDatasetAssociation 3 galaxy.model.metadata DEBUG 2024-02-23 14:39:15,119 [pN:main.1,p:78709,tN:LocalRunner.work_thread-2] loading metadata from file for: HistoryDatasetAssociation 4 galaxy.jobs DEBUG 2024-02-23 14:39:15,151 [pN:main.1,p:78709,tN:LocalRunner.work_thread-2] job_wrapper.finish for job 3 executed (54.675 ms) uvicorn.access INFO 2024-02-23 14:39:17,599 [pN:main.1,p:78709,tN:MainThread] 127.0.0.1:46768 - "GET /api/entry_points?running=true HTTP/1.1" 200 uvicorn.access INFO 2024-02-23 14:39:17,658 [pN:main.1,p:78709,tN:MainThread] 127.0.0.1:46768 - "GET /history/current_history_json?since=2024-02-23T19:38:35.000518 HTTP/1.1" 200 uvicorn.access INFO 2024-02-23 14:39:17,696 [pN:main.1,p:78709,tN:MainThread] 127.0.0.1:46768 - "GET /api/histories/e94ef2b25ec88be9/contents?v=dev&limit=1000&q=update_time-ge&qv=2024-02-23T19:38:38.206Z HTTP/1.1" 200 uvicorn.access INFO 2024-02-23 14:39:17,760 [pN:main.1,p:78709,tN:MainThread] 127.0.0.1:46768 - "GET /api/users/e94ef2b25ec88be9 HTTP/1.1" 200 uvicorn.access INFO 2024-02-23 14:39:17,793 [pN:main.1,p:78709,tN:MainThread] 127.0.0.1:46772 - "GET /api/histories/e94ef2b25ec88be9/contents?v=dev&order=hid&offset=0&limit=100&q=deleted&qv=false&q=visible&qv=true HTTP/1.1" 200 uvicorn.access INFO 2024-02-23 14:39:20,763 [pN:main.1,p:78709,tN:MainThread] 127.0.0.1:46780 - "GET /history/current_history_json?since=2024-02-23T19:39:15.000128 HTTP/1.1" 200 uvicorn.access INFO 2024-02-23 14:39:22,402 [pN:main.1,p:78709,tN:MainThread] 127.0.0.1:46780 - "GET /api/datasets/b35bb5a57277f2b7?view=detailed HTTP/1.1" 200 uvicorn.access INFO 2024-02-23 14:39:23,795 [pN:main.1,p:78709,tN:MainThread] 127.0.0.1:46780 - "GET /history/current_history_json?since=2024-02-23T19:39:15.000128 HTTP/1.1" 200 uvicorn.access INFO 2024-02-23 14:39:26,829 [pN:main.1,p:78709,tN:MainThread] 127.0.0.1:58672 - "GET /history/current_history_json?since=2024-02-23T19:39:15.000128 HTTP/1.1" 200 uvicorn.access INFO 2024-02-23 14:39:27,597 [pN:main.1,p:78709,tN:MainThread] 127.0.0.1:58672 - "GET /api/entry_points?running=true HTTP/1.1" 200 galaxy.jobs.runners.util.process_groups DEBUG 2024-02-23 14:39:28,194 [pN:main.1,p:78709,tN:LocalRunner.work_thread-0] check_pg(): No process found in process group 79227 galaxy.jobs.runners.local DEBUG 2024-02-23 14:39:28,195 [pN:main.1,p:78709,tN:LocalRunner.work_thread-0] execution finished: /tmp/tmpqrlh6ih1/job_working_directory/000/4/galaxy_4.sh galaxy.jobs DEBUG 2024-02-23 14:39:28,221 [pN:main.1,p:78709,tN:LocalRunner.work_thread-0] finish(): Moved /tmp/tmpqrlh6ih1/job_working_directory/000/4/outputs/dataset_41844168-8b86-45ce-a8b8-c8552139307c.dat to /tmp/tmpqrlh6ih1/files/4/1/8/dataset_41844168-8b86-45ce-a8b8-c8552139307c.dat galaxy.jobs DEBUG 2024-02-23 14:39:28,221 [pN:main.1,p:78709,tN:LocalRunner.work_thread-0] finish(): Moved /tmp/tmpqrlh6ih1/job_working_directory/000/4/outputs/dataset_41da1090-710e-4c25-9a3d-97472671c387.dat to /tmp/tmpqrlh6ih1/files/4/1/d/dataset_41da1090-710e-4c25-9a3d-97472671c387.dat galaxy.jobs DEBUG 2024-02-23 14:39:28,221 [pN:main.1,p:78709,tN:LocalRunner.work_thread-0] finish(): Moved /tmp/tmpqrlh6ih1/job_working_directory/000/4/outputs/dataset_5c65272e-4fbd-4386-af7d-d8cbdd90242a.dat to /tmp/tmpqrlh6ih1/files/5/c/6/dataset_5c65272e-4fbd-4386-af7d-d8cbdd90242a.dat galaxy.jobs DEBUG 2024-02-23 14:39:28,221 [pN:main.1,p:78709,tN:LocalRunner.work_thread-0] finish(): Moved /tmp/tmpqrlh6ih1/job_working_directory/000/4/outputs/dataset_92e5dc26-302e-4dbd-bd15-8050babfdff4.dat to /tmp/tmpqrlh6ih1/files/9/2/e/dataset_92e5dc26-302e-4dbd-bd15-8050babfdff4.dat galaxy.model.metadata DEBUG 2024-02-23 14:39:28,232 [pN:main.1,p:78709,tN:LocalRunner.work_thread-0] loading metadata from file for: HistoryDatasetAssociation 5 galaxy.model.metadata DEBUG 2024-02-23 14:39:28,236 [pN:main.1,p:78709,tN:LocalRunner.work_thread-0] loading metadata from file for: HistoryDatasetAssociation 6 galaxy.model.metadata DEBUG 2024-02-23 14:39:28,239 [pN:main.1,p:78709,tN:LocalRunner.work_thread-0] loading metadata from file for: HistoryDatasetAssociation 7 galaxy.model.metadata DEBUG 2024-02-23 14:39:28,263 [pN:main.1,p:78709,tN:LocalRunner.work_thread-0] loading metadata from file for: HistoryDatasetAssociation 8 galaxy.jobs DEBUG 2024-02-23 14:39:28,325 [pN:main.1,p:78709,tN:LocalRunner.work_thread-0] job_wrapper.finish for job 4 executed (110.502 ms) uvicorn.access INFO 2024-02-23 14:39:29,867 [pN:main.1,p:78709,tN:MainThread] 127.0.0.1:58686 - "GET /history/current_history_json?since=2024-02-23T19:39:15.000128 HTTP/1.1" 200 uvicorn.access INFO 2024-02-23 14:39:29,913 [pN:main.1,p:78709,tN:MainThread] 127.0.0.1:58686 - "GET /api/histories/e94ef2b25ec88be9/contents?v=dev&limit=1000&q=update_time-ge&qv=2024-02-23T19:39:17.665Z&details=b35bb5a57277f2b7 HTTP/1.1" 200 uvicorn.access INFO 2024-02-23 14:39:29,971 [pN:main.1,p:78709,tN:MainThread] 127.0.0.1:58686 - "GET /api/users/e94ef2b25ec88be9 HTTP/1.1" 200 uvicorn.access INFO 2024-02-23 14:39:29,997 [pN:main.1,p:78709,tN:MainThread] 127.0.0.1:58700 - "GET 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[pN:main.1,p:78709,tN:MainThread] 127.0.0.1:44964 - "GET /history/current_history_json?since=2024-02-23T19:39:28.000303 HTTP/1.1" 200 uvicorn.access INFO 2024-02-23 14:39:41,064 [pN:main.1,p:78709,tN:MainThread] 127.0.0.1:44964 - "GET /datasets/d6674a497e11acb0/display/?preview=True HTTP/1.1" 200 uvicorn.access INFO 2024-02-23 14:39:42,071 [pN:main.1,p:78709,tN:MainThread] 127.0.0.1:44964 - "GET /history/current_history_json?since=2024-02-23T19:39:28.000303 HTTP/1.1" 200 uvicorn.access INFO 2024-02-23 14:39:45,103 [pN:main.1,p:78709,tN:MainThread] 127.0.0.1:44972 - "GET /history/current_history_json?since=2024-02-23T19:39:28.000303 HTTP/1.1" 200 uvicorn.access INFO 2024-02-23 14:39:47,604 [pN:main.1,p:78709,tN:MainThread] 127.0.0.1:45866 - "GET /api/entry_points?running=true HTTP/1.1" 200 uvicorn.access INFO 2024-02-23 14:39:48,131 [pN:main.1,p:78709,tN:MainThread] 127.0.0.1:45866 - "GET /history/current_history_json?since=2024-02-23T19:39:28.000303 HTTP/1.1" 200 uvicorn.access INFO 2024-02-23 14:39:51,163 [pN:main.1,p:78709,tN:MainThread] 127.0.0.1:45876 - "GET /history/current_history_json?since=2024-02-23T19:39:28.000303 HTTP/1.1" 200 uvicorn.access INFO 2024-02-23 14:39:53,838 [pN:main.1,p:78709,tN:MainThread] 127.0.0.1:45888 - "GET /api/datasets/b35bb5a57277f2b7?view=detailed HTTP/1.1" 200 /scratch/rico/galaxy/lib/galaxy/model/__init__.py:494: SAWarning: Dialect sqlite+pysqlite does *not* support Decimal objects natively, and SQLAlchemy must convert from floating point - rounding errors and other issues may occur. Please consider storing Decimal numbers as strings or integers on this platform for lossless storage. return self.text_metrics + self.numeric_metrics uvicorn.access INFO 2024-02-23 14:39:53,877 [pN:main.1,p:78709,tN:MainThread] 127.0.0.1:45888 - "GET /api/jobs/b35bb5a57277f2b7?full=True HTTP/1.1" 200 uvicorn.access INFO 2024-02-23 14:39:54,036 [pN:main.1,p:78709,tN:MainThread] 127.0.0.1:45902 - "GET /api/datasets/b35bb5a57277f2b7/storage HTTP/1.1" 200 uvicorn.access INFO 2024-02-23 14:39:54,048 [pN:main.1,p:78709,tN:MainThread] 127.0.0.1:45912 - "GET /api/datasets/b35bb5a57277f2b7/inheritance_chain HTTP/1.1" 200 uvicorn.access INFO 2024-02-23 14:39:54,095 [pN:main.1,p:78709,tN:MainThread] 127.0.0.1:45940 - "GET /api/jobs/b35bb5a57277f2b7/destination_params HTTP/1.1" 200 uvicorn.access INFO 2024-02-23 14:39:54,110 [pN:main.1,p:78709,tN:MainThread] 127.0.0.1:45924 - "GET /api/datasets/b35bb5a57277f2b7/metrics?hda_ldda=hda HTTP/1.1" 200 uvicorn.access INFO 2024-02-23 14:39:54,133 [pN:main.1,p:78709,tN:MainThread] 127.0.0.1:45888 - "GET /api/datasets/b35bb5a57277f2b7/parameters_display?hda_ldda=hda HTTP/1.1" 200 uvicorn.access INFO 2024-02-23 14:39:54,188 [pN:main.1,p:78709,tN:MainThread] 127.0.0.1:45912 - "GET /api/users/current/usage/__null__ HTTP/1.1" 200 uvicorn.access INFO 2024-02-23 14:39:54,204 [pN:main.1,p:78709,tN:MainThread] 127.0.0.1:45952 - "GET /api/datasets/b35bb5a57277f2b7?view=detailed HTTP/1.1" 200 uvicorn.access INFO 2024-02-23 14:39:54,229 [pN:main.1,p:78709,tN:MainThread] 127.0.0.1:45940 - "GET /history/current_history_json?since=2024-02-23T19:39:28.000303 HTTP/1.1" 200 uvicorn.access INFO 2024-02-23 14:39:54,268 [pN:main.1,p:78709,tN:MainThread] 127.0.0.1:45902 - "GET /api/jobs/b35bb5a57277f2b7?full=True HTTP/1.1" 200 uvicorn.access INFO 2024-02-23 14:39:54,315 [pN:main.1,p:78709,tN:MainThread] 127.0.0.1:45888 - "GET /api/datasets/a8266ce1f5b52ae6?view=detailed HTTP/1.1" 200 uvicorn.access INFO 2024-02-23 14:39:54,324 [pN:main.1,p:78709,tN:MainThread] 127.0.0.1:45912 - "GET /api/configuration/decode/b35bb5a57277f2b7 HTTP/1.1" 200 uvicorn.access INFO 2024-02-23 14:39:54,351 [pN:main.1,p:78709,tN:MainThread] 127.0.0.1:45940 - "GET /api/configuration/decode/e94ef2b25ec88be9 HTTP/1.1" 200 uvicorn.access INFO 2024-02-23 14:39:54,358 [pN:main.1,p:78709,tN:MainThread] 127.0.0.1:45924 - "GET /api/datasets/d6674a497e11acb0?view=detailed HTTP/1.1" 200 uvicorn.access INFO 2024-02-23 14:39:54,378 [pN:main.1,p:78709,tN:MainThread] 127.0.0.1:45952 - "GET /api/datasets/b35bb5a57277f2b7?view=detailed HTTP/1.1" 200 uvicorn.access INFO 2024-02-23 14:39:54,381 [pN:main.1,p:78709,tN:MainThread] 127.0.0.1:45912 - "GET /api/configuration/decode/b35bb5a57277f2b7 HTTP/1.1" 200 uvicorn.access INFO 2024-02-23 14:39:57,260 [pN:main.1,p:78709,tN:MainThread] 127.0.0.1:57798 - "GET /history/current_history_json?since=2024-02-23T19:39:28.000303 HTTP/1.1" 200 uvicorn.access INFO 2024-02-23 14:39:57,600 [pN:main.1,p:78709,tN:MainThread] 127.0.0.1:57798 - "GET /api/entry_points?running=true HTTP/1.1" 200 uvicorn.access INFO 2024-02-23 14:40:00,295 [pN:main.1,p:78709,tN:MainThread] 127.0.0.1:57804 - "GET /history/current_history_json?since=2024-02-23T19:39:28.000303 HTTP/1.1" 200 uvicorn.access INFO 2024-02-23 14:40:03,324 [pN:main.1,p:78709,tN:MainThread] 127.0.0.1:57812 - 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"GET /api/configuration/decode/e94ef2b25ec88be9 HTTP/1.1" 200 uvicorn.access INFO 2024-02-23 14:41:22,462 [pN:main.1,p:78709,tN:MainThread] 127.0.0.1:53324 - "GET /api/configuration/decode/9a32e5e3a6abd4e7 HTTP/1.1" 200 uvicorn.access INFO 2024-02-23 14:41:22,468 [pN:main.1,p:78709,tN:MainThread] 127.0.0.1:53306 - "GET /api/datasets/9a32e5e3a6abd4e7?view=detailed HTTP/1.1" 200 uvicorn.access INFO 2024-02-23 14:41:25,288 [pN:main.1,p:78709,tN:MainThread] 127.0.0.1:53356 - "GET /history/current_history_json?since=2024-02-23T19:39:28.000303 HTTP/1.1" 200 uvicorn.access INFO 2024-02-23 14:41:27,733 [pN:main.1,p:78709,tN:MainThread] 127.0.0.1:58944 - "GET /api/entry_points?running=true HTTP/1.1" 200 uvicorn.access INFO 2024-02-23 14:41:28,315 [pN:main.1,p:78709,tN:MainThread] 127.0.0.1:58944 - "GET /history/current_history_json?since=2024-02-23T19:39:28.000303 HTTP/1.1" 200 uvicorn.access INFO 2024-02-23 14:41:32,216 [pN:main.1,p:78709,tN:MainThread] 127.0.0.1:58948 - "GET /history/current_history_json?since=2024-02-23T19:39:28.000303 HTTP/1.1" 200 ==> /tmp/tmpqrlh6ih1/gravity/log/celery-beat.log <== [2024-02-23 14:41:34,178: DEBUG/MainProcess] beat: Synchronizing schedule... [2024-02-23 14:41:34,179: INFO/MainProcess] Scheduler: Sending due task clean-object-store-caches (galaxy.clean_object_store_caches) [2024-02-23 14:41:34,195: DEBUG/MainProcess] galaxy.clean_object_store_caches sent. id->f5e83b64-c60a-4621-bc5d-a6516ea91ec9 [2024-02-23 14:41:34,196: DEBUG/MainProcess] beat: Waking up in 5.00 minutes. ==> /tmp/tmpqrlh6ih1/gravity/log/celery.log <== [2024-02-23 14:41:35,030: INFO/main] Task galaxy.clean_object_store_caches[f5e83b64-c60a-4621-bc5d-a6516ea91ec9] received [2024-02-23 14:41:35,031: DEBUG/main] TaskPool: Apply <function fast_trace_task at 0x7f9f1756ed90> (args:('galaxy.clean_object_store_caches', 'f5e83b64-c60a-4621-bc5d-a6516ea91ec9', {'lang': 'py', 'task': 'galaxy.clean_object_store_caches', 'id': 'f5e83b64-c60a-4621-bc5d-a6516ea91ec9', 'shadow': None, 'eta': None, 'expires': None, 'group': None, 'group_index': None, 'retries': 0, 'timelimit': [None, None], 'root_id': 'f5e83b64-c60a-4621-bc5d-a6516ea91ec9', 'parent_id': None, 'argsrepr': '()', 'kwargsrepr': '{}', 'origin': 'gen78504@laila', 'ignore_result': False, 'properties': {'correlation_id': 'f5e83b64-c60a-4621-bc5d-a6516ea91ec9', 'reply_to': 'a834fe8d-fc9c-31a2-9791-be846a6fc4af', 'delivery_mode': 2, 'delivery_info': {'exchange': '', 'routing_key': 'galaxy.internal'}, 'priority': 0, 'body_encoding': 'base64', 'delivery_tag': '52a407fc-3529-4119-bd33-a501e38607aa'}, 'reply_to': 'a834fe8d-fc9c-31a2-9791-be846a6fc4af', 'correlation_id': 'f5e83b64-c60a-4621-bc5d-a6516ea91ec9', 'hostname': 'celery@laila', 'delivery_info': {'exchange': '', 'routing_key': 'galaxy.internal', 'priority': 0, 'redelivered': None},... kwargs:{}) [2024-02-23 14:41:35,033: INFO/main] Successfully executed Celery task clean_object_store_caches to prune object store cache directories clean_object_store_caches to prune object store cache directories (0.532 ms) [2024-02-23 14:41:35,034: INFO/main] Task galaxy.clean_object_store_caches[f5e83b64-c60a-4621-bc5d-a6516ea91ec9] succeeded in 0.0018830089829862118s: None ==> /tmp/tmpqrlh6ih1/gravity/log/gunicorn.log <== uvicorn.access INFO 2024-02-23 14:41:38,212 [pN:main.1,p:78709,tN:MainThread] 127.0.0.1:54156 - 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"GET /history/current_history_json?since=2024-02-23T19:39:28.000303 HTTP/1.1" 200 uvicorn.access INFO 2024-02-23 14:46:27,147 [pN:main.1,p:78709,tN:MainThread] 127.0.0.1:45726 - "GET /history/current_history_json?since=2024-02-23T19:39:28.000303 HTTP/1.1" 200 uvicorn.access INFO 2024-02-23 14:46:30,176 [pN:main.1,p:78709,tN:MainThread] 127.0.0.1:45730 - "GET /history/current_history_json?since=2024-02-23T19:39:28.000303 HTTP/1.1" 200 uvicorn.access INFO 2024-02-23 14:46:31,096 [pN:main.1,p:78709,tN:MainThread] 127.0.0.1:45730 - "GET /api/entry_points?running=true HTTP/1.1" 200 uvicorn.access INFO 2024-02-23 14:46:33,207 [pN:main.1,p:78709,tN:MainThread] 127.0.0.1:45732 - "GET /history/current_history_json?since=2024-02-23T19:39:28.000303 HTTP/1.1" 200 ==> /tmp/tmpqrlh6ih1/gravity/log/celery-beat.log <== [2024-02-23 14:46:34,296: DEBUG/MainProcess] beat: Synchronizing schedule... [2024-02-23 14:46:34,297: DEBUG/MainProcess] beat: Waking up in 5.00 minutes. ==> /tmp/tmpqrlh6ih1/gravity/log/gunicorn.log <== uvicorn.access INFO 2024-02-23 14:46:36,235 [pN:main.1,p:78709,tN:MainThread] 127.0.0.1:48966 - "GET /history/current_history_json?since=2024-02-23T19:39:28.000303 HTTP/1.1" 200 uvicorn.access INFO 2024-02-23 14:46:39,266 [pN:main.1,p:78709,tN:MainThread] 127.0.0.1:48982 - "GET /history/current_history_json?since=2024-02-23T19:39:28.000303 HTTP/1.1" 200 uvicorn.access INFO 2024-02-23 14:46:41,098 [pN:main.1,p:78709,tN:MainThread] 127.0.0.1:48982 - "GET /api/entry_points?running=true HTTP/1.1" 200 uvicorn.access INFO 2024-02-23 14:46:42,295 [pN:main.1,p:78709,tN:MainThread] 127.0.0.1:48982 - "GET /history/current_history_json?since=2024-02-23T19:39:28.000303 HTTP/1.1" 200 uvicorn.access INFO 2024-02-23 14:46:45,325 [pN:main.1,p:78709,tN:MainThread] 127.0.0.1:48996 - "GET /history/current_history_json?since=2024-02-23T19:39:28.000303 HTTP/1.1" 200 uvicorn.access INFO 2024-02-23 14:46:48,356 [pN:main.1,p:78709,tN:MainThread] 127.0.0.1:37342 - 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"GET /history/current_history_json?since=2024-02-23T19:39:28.000303 HTTP/1.1" 200 uvicorn.access INFO 2024-02-23 14:48:01,065 [pN:main.1,p:78709,tN:MainThread] 127.0.0.1:49842 - "GET /history/current_history_json?since=2024-02-23T19:39:28.000303 HTTP/1.1" 200 uvicorn.access INFO 2024-02-23 14:48:01,109 [pN:main.1,p:78709,tN:MainThread] 127.0.0.1:49842 - "GET /api/entry_points?running=true HTTP/1.1" 200 uvicorn.access INFO 2024-02-23 14:48:04,207 [pN:main.1,p:78709,tN:MainThread] 127.0.0.1:49856 - "GET /history/current_history_json?since=2024-02-23T19:39:28.000303 HTTP/1.1" 200 uvicorn.access INFO 2024-02-23 14:48:11,204 [pN:main.1,p:78709,tN:MainThread] 127.0.0.1:43370 - "GET /api/entry_points?running=true HTTP/1.1" 200 uvicorn.access INFO 2024-02-23 14:48:22,200 [pN:main.1,p:78709,tN:MainThread] 127.0.0.1:56118 - "GET /api/entry_points?running=true HTTP/1.1" 200 uvicorn.access INFO 2024-02-23 14:48:32,203 [pN:main.1,p:78709,tN:MainThread] 127.0.0.1:46388 - "GET /api/entry_points?running=true HTTP/1.1" 200 uvicorn.access INFO 2024-02-23 14:48:43,205 [pN:main.1,p:78709,tN:MainThread] 127.0.0.1:44136 - "GET /api/entry_points?running=true HTTP/1.1" 200 uvicorn.access INFO 2024-02-23 14:48:53,213 [pN:main.1,p:78709,tN:MainThread] 127.0.0.1:51218 - "GET /api/entry_points?running=true HTTP/1.1" 200 uvicorn.access INFO 2024-02-23 14:49:05,199 [pN:main.1,p:78709,tN:MainThread] 127.0.0.1:59494 - "GET /history/current_history_json?since=2024-02-23T19:39:28.000303 HTTP/1.1" 200 uvicorn.access INFO 2024-02-23 14:50:03,199 [pN:main.1,p:78709,tN:MainThread] 127.0.0.1:58916 - "GET /api/entry_points?running=true HTTP/1.1" 200 uvicorn.access INFO 2024-02-23 14:50:06,195 [pN:main.1,p:78709,tN:MainThread] 127.0.0.1:56064 - "GET /history/current_history_json?since=2024-02-23T19:39:28.000303 HTTP/1.1" 200 uvicorn.access INFO 2024-02-23 14:51:03,204 [pN:main.1,p:78709,tN:MainThread] 127.0.0.1:46606 - "GET /api/entry_points?running=true HTTP/1.1" 200 uvicorn.access INFO 2024-02-23 14:51:07,197 [pN:main.1,p:78709,tN:MainThread] 127.0.0.1:58106 - "GET /history/current_history_json?since=2024-02-23T19:39:28.000303 HTTP/1.1" 200 ==> /tmp/tmpqrlh6ih1/gravity/log/celery-beat.log <== [2024-02-23 14:51:34,270: DEBUG/MainProcess] beat: Synchronizing schedule... [2024-02-23 14:51:34,271: INFO/MainProcess] Scheduler: Sending due task clean-object-store-caches (galaxy.clean_object_store_caches) [2024-02-23 14:51:34,287: DEBUG/MainProcess] galaxy.clean_object_store_caches sent. id->2e7725dc-31d4-4d56-8afd-8dae5ec0815c [2024-02-23 14:51:34,288: DEBUG/MainProcess] beat: Waking up in 5.00 minutes. ==> /tmp/tmpqrlh6ih1/gravity/log/celery.log <== [2024-02-23 14:51:35,170: INFO/main] Task galaxy.clean_object_store_caches[2e7725dc-31d4-4d56-8afd-8dae5ec0815c] received [2024-02-23 14:51:35,171: DEBUG/main] TaskPool: Apply <function fast_trace_task at 0x7f9f1756ed90> (args:('galaxy.clean_object_store_caches', '2e7725dc-31d4-4d56-8afd-8dae5ec0815c', {'lang': 'py', 'task': 'galaxy.clean_object_store_caches', 'id': '2e7725dc-31d4-4d56-8afd-8dae5ec0815c', 'shadow': None, 'eta': None, 'expires': None, 'group': None, 'group_index': None, 'retries': 0, 'timelimit': [None, None], 'root_id': '2e7725dc-31d4-4d56-8afd-8dae5ec0815c', 'parent_id': None, 'argsrepr': '()', 'kwargsrepr': '{}', 'origin': 'gen78504@laila', 'ignore_result': False, 'properties': {'correlation_id': '2e7725dc-31d4-4d56-8afd-8dae5ec0815c', 'reply_to': 'a834fe8d-fc9c-31a2-9791-be846a6fc4af', 'delivery_mode': 2, 'delivery_info': {'exchange': '', 'routing_key': 'galaxy.internal'}, 'priority': 0, 'body_encoding': 'base64', 'delivery_tag': '3b2497f6-7230-41ee-afbb-d68e1f75fbfd'}, 'reply_to': 'a834fe8d-fc9c-31a2-9791-be846a6fc4af', 'correlation_id': '2e7725dc-31d4-4d56-8afd-8dae5ec0815c', 'hostname': 'celery@laila', 'delivery_info': {'exchange': '', 'routing_key': 'galaxy.internal', 'priority': 0, 'redelivered': None},... kwargs:{}) [2024-02-23 14:51:35,174: INFO/main] Successfully executed Celery task clean_object_store_caches to prune object store cache directories clean_object_store_caches to prune object store cache directories (0.612 ms) [2024-02-23 14:51:35,174: INFO/main] Task galaxy.clean_object_store_caches[2e7725dc-31d4-4d56-8afd-8dae5ec0815c] succeeded in 0.0025258829118683934s: None ==> /tmp/tmpqrlh6ih1/gravity/log/gunicorn.log <== uvicorn.access INFO 2024-02-23 14:52:03,197 [pN:main.1,p:78709,tN:MainThread] 127.0.0.1:34074 - 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"GET /history/current_history_json?since=2024-02-23T19:39:28.000303 HTTP/1.1" 200 uvicorn.access INFO 2024-02-23 14:55:23,280 [pN:main.1,p:78709,tN:MainThread] 127.0.0.1:44312 - "GET /history/current_history_json?since=2024-02-23T19:39:28.000303 HTTP/1.1" 200 uvicorn.access INFO 2024-02-23 14:55:26,311 [pN:main.1,p:78709,tN:MainThread] 127.0.0.1:39666 - "GET /history/current_history_json?since=2024-02-23T19:39:28.000303 HTTP/1.1" 200 uvicorn.access INFO 2024-02-23 14:55:29,341 [pN:main.1,p:78709,tN:MainThread] 127.0.0.1:39682 - "GET /history/current_history_json?since=2024-02-23T19:39:28.000303 HTTP/1.1" 200 uvicorn.access INFO 2024-02-23 14:55:29,603 [pN:main.1,p:78709,tN:MainThread] 127.0.0.1:39682 - "GET /api/entry_points?running=true HTTP/1.1" 200 uvicorn.access INFO 2024-02-23 14:55:32,371 [pN:main.1,p:78709,tN:MainThread] 127.0.0.1:39686 - "GET /history/current_history_json?since=2024-02-23T19:39:28.000303 HTTP/1.1" 200 uvicorn.access INFO 2024-02-23 14:55:35,401 [pN:main.1,p:78709,tN:MainThread] 127.0.0.1:39696 - "GET /history/current_history_json?since=2024-02-23T19:39:28.000303 HTTP/1.1" 200 uvicorn.access INFO 2024-02-23 14:55:38,427 [pN:main.1,p:78709,tN:MainThread] 127.0.0.1:55476 - "GET /history/current_history_json?since=2024-02-23T19:39:28.000303 HTTP/1.1" 200 uvicorn.access INFO 2024-02-23 14:55:39,604 [pN:main.1,p:78709,tN:MainThread] 127.0.0.1:55476 - "GET /api/entry_points?running=true HTTP/1.1" 200 uvicorn.access INFO 2024-02-23 14:55:41,455 [pN:main.1,p:78709,tN:MainThread] 127.0.0.1:55476 - "GET /history/current_history_json?since=2024-02-23T19:39:28.000303 HTTP/1.1" 200 uvicorn.access INFO 2024-02-23 14:55:44,482 [pN:main.1,p:78709,tN:MainThread] 127.0.0.1:55490 - "GET /history/current_history_json?since=2024-02-23T19:39:28.000303 HTTP/1.1" 200 uvicorn.access INFO 2024-02-23 14:55:47,511 [pN:main.1,p:78709,tN:MainThread] 127.0.0.1:38200 - "GET /history/current_history_json?since=2024-02-23T19:39:28.000303 HTTP/1.1" 200 uvicorn.access INFO 2024-02-23 14:55:49,607 [pN:main.1,p:78709,tN:MainThread] 127.0.0.1:38202 - "GET /api/entry_points?running=true HTTP/1.1" 200 uvicorn.access INFO 2024-02-23 14:55:50,551 [pN:main.1,p:78709,tN:MainThread] 127.0.0.1:38202 - "GET /history/current_history_json?since=2024-02-23T19:39:28.000303 HTTP/1.1" 200 uvicorn.access INFO 2024-02-23 14:55:53,580 [pN:main.1,p:78709,tN:MainThread] 127.0.0.1:38218 - "GET /history/current_history_json?since=2024-02-23T19:39:28.000303 HTTP/1.1" 200 uvicorn.access INFO 2024-02-23 14:55:56,609 [pN:main.1,p:78709,tN:MainThread] 127.0.0.1:40354 - "GET /history/current_history_json?since=2024-02-23T19:39:28.000303 HTTP/1.1" 200 ==> /tmp/tmpqrlh6ih1/gravity/log/celery-beat.log <== [2024-02-23 14:56:34,388: DEBUG/MainProcess] beat: Synchronizing schedule... [2024-02-23 14:56:34,389: DEBUG/MainProcess] beat: Waking up in 5.00 minutes. [2024-02-23 15:01:34,361: DEBUG/MainProcess] beat: Synchronizing schedule... [2024-02-23 15:01:34,363: INFO/MainProcess] Scheduler: Sending due task clean-object-store-caches (galaxy.clean_object_store_caches) [2024-02-23 15:01:34,379: DEBUG/MainProcess] galaxy.clean_object_store_caches sent. id->535f1714-1353-40ac-acee-799c6b05d637 [2024-02-23 15:01:34,380: DEBUG/MainProcess] beat: Waking up in 5.00 minutes. ==> /tmp/tmpqrlh6ih1/gravity/log/celery.log <== [2024-02-23 15:01:35,002: INFO/main] Task galaxy.clean_object_store_caches[535f1714-1353-40ac-acee-799c6b05d637] received [2024-02-23 15:01:35,002: DEBUG/main] TaskPool: Apply <function fast_trace_task at 0x7f9f1756ed90> (args:('galaxy.clean_object_store_caches', '535f1714-1353-40ac-acee-799c6b05d637', {'lang': 'py', 'task': 'galaxy.clean_object_store_caches', 'id': '535f1714-1353-40ac-acee-799c6b05d637', 'shadow': None, 'eta': None, 'expires': None, 'group': None, 'group_index': None, 'retries': 0, 'timelimit': [None, None], 'root_id': '535f1714-1353-40ac-acee-799c6b05d637', 'parent_id': None, 'argsrepr': '()', 'kwargsrepr': '{}', 'origin': 'gen78504@laila', 'ignore_result': False, 'properties': {'correlation_id': '535f1714-1353-40ac-acee-799c6b05d637', 'reply_to': 'a834fe8d-fc9c-31a2-9791-be846a6fc4af', 'delivery_mode': 2, 'delivery_info': {'exchange': '', 'routing_key': 'galaxy.internal'}, 'priority': 0, 'body_encoding': 'base64', 'delivery_tag': '02332643-0c8b-4178-9919-02885eee82d3'}, 'reply_to': 'a834fe8d-fc9c-31a2-9791-be846a6fc4af', 'correlation_id': '535f1714-1353-40ac-acee-799c6b05d637', 'hostname': 'celery@laila', 'delivery_info': {'exchange': '', 'routing_key': 'galaxy.internal', 'priority': 0, 'redelivered': None},... kwargs:{}) [2024-02-23 15:01:35,005: INFO/main] Successfully executed Celery task clean_object_store_caches to prune object store cache directories clean_object_store_caches to prune object store cache directories (0.552 ms) [2024-02-23 15:01:35,040: INFO/main] Task galaxy.clean_object_store_caches[535f1714-1353-40ac-acee-799c6b05d637] succeeded in 0.03627739998046309s: None ==> /tmp/tmpqrlh6ih1/gravity/log/celery-beat.log <== [2024-02-23 15:06:34,480: DEBUG/MainProcess] beat: Synchronizing schedule... [2024-02-23 15:06:34,482: DEBUG/MainProcess] beat: Waking up in 5.00 minutes. [2024-02-23 15:11:34,383: DEBUG/MainProcess] beat: Synchronizing schedule... [2024-02-23 15:11:34,384: INFO/MainProcess] Scheduler: Sending due task clean-object-store-caches (galaxy.clean_object_store_caches) [2024-02-23 15:11:34,400: DEBUG/MainProcess] galaxy.clean_object_store_caches sent. id->6eb22bfa-2bec-4d16-ba81-b677c429938a [2024-02-23 15:11:34,400: DEBUG/MainProcess] beat: Waking up in 5.00 minutes. ==> /tmp/tmpqrlh6ih1/gravity/log/celery.log <== [2024-02-23 15:11:35,103: INFO/main] Task galaxy.clean_object_store_caches[6eb22bfa-2bec-4d16-ba81-b677c429938a] received [2024-02-23 15:11:35,104: DEBUG/main] TaskPool: Apply <function fast_trace_task at 0x7f9f1756ed90> (args:('galaxy.clean_object_store_caches', '6eb22bfa-2bec-4d16-ba81-b677c429938a', {'lang': 'py', 'task': 'galaxy.clean_object_store_caches', 'id': '6eb22bfa-2bec-4d16-ba81-b677c429938a', 'shadow': None, 'eta': None, 'expires': None, 'group': None, 'group_index': None, 'retries': 0, 'timelimit': [None, None], 'root_id': '6eb22bfa-2bec-4d16-ba81-b677c429938a', 'parent_id': None, 'argsrepr': '()', 'kwargsrepr': '{}', 'origin': 'gen78504@laila', 'ignore_result': False, 'properties': {'correlation_id': '6eb22bfa-2bec-4d16-ba81-b677c429938a', 'reply_to': 'a834fe8d-fc9c-31a2-9791-be846a6fc4af', 'delivery_mode': 2, 'delivery_info': {'exchange': '', 'routing_key': 'galaxy.internal'}, 'priority': 0, 'body_encoding': 'base64', 'delivery_tag': 'f8974f4e-d12f-44c5-8432-dd8db2f74b43'}, 'reply_to': 'a834fe8d-fc9c-31a2-9791-be846a6fc4af', 'correlation_id': '6eb22bfa-2bec-4d16-ba81-b677c429938a', 'hostname': 'celery@laila', 'delivery_info': {'exchange': '', 'routing_key': 'galaxy.internal', 'priority': 0, 'redelivered': None},... kwargs:{}) [2024-02-23 15:11:35,107: INFO/main] Successfully executed Celery task clean_object_store_caches to prune object store cache directories clean_object_store_caches to prune object store cache directories (0.548 ms) [2024-02-23 15:11:35,107: INFO/main] Task galaxy.clean_object_store_caches[6eb22bfa-2bec-4d16-ba81-b677c429938a] succeeded in 0.0018642700742930174s: None