Mercurial > repos > richard-burhans > ncbi_fcs_adaptor
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planemo upload for repository https://github.com/richard-burhans/galaxytools/tree/main/tools/ncbi_fcs_adaptor commit 74ccb005520db16be005e6471e8624357aca7d94
| author | richard-burhans |
|---|---|
| date | Fri, 01 Mar 2024 18:26:57 +0000 |
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| children |
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Created directory for Galaxy configuration [/tmp/tmpu7x63f_i] Writing dependency_resolvers_config_file to path /tmp/tmpu7x63f_i/resolvers_conf.xml with contents [<dependency_resolvers> <tool_shed_packages /> <conda auto_init="True" auto_install="True" ensure_channels="conda-forge,bioconda,defaults" prefix="/afs/bx.psu.edu/home/rico/miniconda3" condarc_override="/scratch/rico/.planemo/condarc" /> <conda versionless="true" auto_init="True" auto_install="True" ensure_channels="conda-forge,bioconda,defaults" prefix="/afs/bx.psu.edu/home/rico/miniconda3" condarc_override="/scratch/rico/.planemo/condarc" /> </dependency_resolvers> ] Writing tool_conf to path /tmp/tmpu7x63f_i/tool_conf.xml with contents [<toolbox> <tool file="data_source/upload.xml" /> <tool file="/scratch/rico/galaxytools/tools/ncbi_fcs_adaptor/ncbi_fcs_adaptor.xml" /> </toolbox> ] Starting Galaxy with command [cd /scratch/rico/galaxy && if [ -d .venv ]; then GALAXY_VIRTUAL_ENV=.venv; else GALAXY_VIRTUAL_ENV=/scratch/rico/.planemo/gx_venv_3; fi && export GALAXY_VIRTUAL_ENV && echo "Set \$GALAXY_VIRTUAL_ENV to $GALAXY_VIRTUAL_ENV" && if [ -e "$GALAXY_VIRTUAL_ENV" ]; then echo "Virtual environment directory exists."; else echo "Virtual environment directory does not exist."; fi && if [ ! -e "$GALAXY_VIRTUAL_ENV" ]; then /scratch/rico/.venv/bin/virtualenv $GALAXY_VIRTUAL_ENV -p /scratch/rico/.venv/bin/python3; echo "Created virtualenv"; fi && echo "Set \$GALAXY_VIRTUAL_ENV to $GALAXY_VIRTUAL_ENV" && if [ -e "$GALAXY_VIRTUAL_ENV" ]; then echo "Virtual environment directory exists."; else echo "Virtual environment directory does not exist."; fi && if [ -e "$GALAXY_VIRTUAL_ENV" ]; then . "$GALAXY_VIRTUAL_ENV"/bin/activate; echo "Activated a virtualenv for Galaxy"; echo "$VIRTUAL_ENV"; else echo "Failed to activate virtualenv."; fi && bash -c 'pwd' && bash -c 'which python' && bash -c 'which pip' && bash -c 'echo $GALAXY_VIRTUAL_ENV' && bash -c 'echo $VIRTUAL_ENV' && bash -c 'ls -a' && /scratch/rico/galaxy/run.sh $COMMON_STARTUP_ARGS --daemon] With environment variables: ============================ GALAXY_CONFIG_OVERRIDE_MASTER_API_KEY="test_key" GALAXY_CONFIG_OVERRIDE_ADMIN_USERS="planemo@galaxyproject.org,test@bx.psu.edu" GALAXY_CONFIG_OVERRIDE_EXPOSE_DATASET_PATH="True" GALAXY_CONFIG_OVERRIDE_COLLECT_OUTPUTS_FROM="job_working_directory" GALAXY_CONFIG_OVERRIDE_ALLOW_PATH_PASTE="True" GALAXY_CONFIG_OVERRIDE_CHECK_MIGRATE_TOOLS="False" GALAXY_CONFIG_OVERRIDE_USE_CACHED_DEPENDENCY_MANAGER="True" GALAXY_CONFIG_OVERRIDE_BRAND="Configured by Planemo" GALAXY_CONFIG_OVERRIDE_STRICT_CWL_VALIDATION="True" GALAXY_CONFIG_OVERRIDE_CLEANUP_JOB="never" GALAXY_CONFIG_OVERRIDE_SINGLE_USER="planemo@galaxyproject.org" GALAXY_CONFIG_OVERRIDE_SERVER_NAME="main" GALAXY_CONFIG_OVERRIDE_FTP_UPLOAD_DIR_TEMPLATE="${ftp_upload_dir}" GALAXY_CONFIG_OVERRIDE_FTP_UPLOAD_PURGE="False" GALAXY_CONFIG_OVERRIDE_FTP_UPLOAD_DIR="/scratch/rico/galaxytools/tools/ncbi_fcs_adaptor/test-data" GALAXY_CONFIG_OVERRIDE_FTP_UPLOAD_SITE="Test Data" GALAXY_CONFIG_OVERRIDE_CHECK_UPLOAD_CONTENT="False" GALAXY_CONFIG_OVERRIDE_TOOL_DEPENDENCY_DIR="/tmp/tmpu7x63f_i/deps" GALAXY_CONFIG_OVERRIDE_FILE_PATH="/tmp/tmpu7x63f_i/files" GALAXY_CONFIG_OVERRIDE_NEW_FILE_PATH="/tmp/tmpu7x63f_i/tmp" GALAXY_CONFIG_OVERRIDE_TOOL_CONFIG_FILE="/tmp/tmpu7x63f_i/tool_conf.xml,/tmp/tmpu7x63f_i/shed_tools_conf.xml" GALAXY_CONFIG_OVERRIDE_TOOL_SHEDS_CONFIG_FILE="/tmp/tmpu7x63f_i/tool_sheds_conf.xml" GALAXY_CONFIG_OVERRIDE_MANAGE_DEPENDENCY_RELATIONSHIPS="False" GALAXY_CONFIG_OVERRIDE_JOB_WORKING_DIRECTORY="/tmp/tmpu7x63f_i/job_working_directory" GALAXY_CONFIG_OVERRIDE_TEMPLATE_CACHE_PATH="/tmp/tmpu7x63f_i/compiled_templates" GALAXY_CONFIG_OVERRIDE_CITATION_CACHE_TYPE="file" GALAXY_CONFIG_OVERRIDE_CITATION_CACHE_DATA_DIR="/tmp/tmpu7x63f_i/citations/data" GALAXY_CONFIG_OVERRIDE_CITATION_CACHE_LOCK_DIR="/tmp/tmpu7x63f_i/citations/lock" GALAXY_CONFIG_OVERRIDE_DATABASE_AUTO_MIGRATE="True" GALAXY_CONFIG_OVERRIDE_ENABLE_BETA_TOOL_FORMATS="True" GALAXY_CONFIG_OVERRIDE_ID_SECRET="c438e0e1bc688bbd3d5883de201f31df" GALAXY_CONFIG_OVERRIDE_LOG_LEVEL="DEBUG" GALAXY_CONFIG_OVERRIDE_DEBUG="true" GALAXY_CONFIG_OVERRIDE_WATCH_TOOLS="auto" GALAXY_CONFIG_OVERRIDE_DEFAULT_JOB_SHELL="/bin/bash" GALAXY_CONFIG_OVERRIDE_TOOL_DATA_TABLE_CONFIG_PATH="/scratch/rico/galaxytools/tools/ncbi_fcs_adaptor/tool_data_table_conf.xml.test" GALAXY_CONFIG_OVERRIDE_INTEGRATED_TOOL_PANEL_CONFIG="/tmp/tmpu7x63f_i/integrated_tool_panel_conf.xml" GALAXY_CONFIG_OVERRIDE_MIGRATED_TOOLS_CONFIG="/tmp/tmpu7x63f_i/empty_tool_conf.xml" GALAXY_CONFIG_OVERRIDE_TEST_DATA_DIR="/scratch/rico/galaxytools/tools/ncbi_fcs_adaptor/test-data" GALAXY_CONFIG_OVERRIDE_SHED_DATA_MANAGER_CONFIG_FILE="/tmp/tmpu7x63f_i/shed_data_manager_conf.xml" GALAXY_CONFIG_OVERRIDE_OUTPUTS_TO_WORKING_DIRECTORY="True" GALAXY_CONFIG_OVERRIDE_OBJECT_STORE_STORE_BY="uuid" GALAXY_CONFIG_OVERRIDE_DATABASE_CONNECTION="sqlite:////tmp/tmpu7x63f_i/galaxy.sqlite?isolation_level=IMMEDIATE" GALAXY_CONFIG_OVERRIDE_JOB_CONFIG_FILE="/scratch/rico/galaxytools/tools/ncbi_fcs_adaptor/planemo_job_conf.xml" GALAXY_CONFIG_OVERRIDE_JOB_METRICS_CONFIG_FILE="/tmp/tmpu7x63f_i/job_metrics_conf.xml" GALAXY_CONFIG_OVERRIDE_DEPENDENCY_RESOLVERS_CONFIG_FILE="/tmp/tmpu7x63f_i/resolvers_conf.xml" GALAXY_SKIP_CLIENT_BUILD="1" GALAXY_DEVELOPMENT_ENVIRONMENT="1" GALAXY_LOG="main.log" GALAXY_PID="main.pid" GALAXY_CONFIG_FILE="/tmp/tmpu7x63f_i/galaxy.yml" GRAVITY_STATE_DIR="/tmp/tmpu7x63f_i/gravity" SUPERVISORD_SOCKET="/tmp/tmp2cd4yyct.sock" ============================ galaxy.util.commands WARNING 2024-02-23 13:23:05,939: Passing program arguments as a string may be a security hazard if combined with untrusted input Set $GALAXY_VIRTUAL_ENV to /scratch/rico/.planemo/gx_venv_3 Virtual environment directory does not exist. created virtual environment CPython3.7.3.final.0-64 in 822ms creator CPython3Posix(dest=/scratch/rico/.planemo/gx_venv_3, clear=False, no_vcs_ignore=False, global=False) seeder FromAppData(download=False, pip=bundle, setuptools=bundle, wheel=bundle, via=copy, app_data_dir=/afs/bx.psu.edu/home/rico/.local/share/virtualenv) added seed packages: pip==23.3.2, setuptools==68.0.0, wheel==0.42.0 activators BashActivator,CShellActivator,FishActivator,NushellActivator,PowerShellActivator,PythonActivator Created virtualenv Set $GALAXY_VIRTUAL_ENV to /scratch/rico/.planemo/gx_venv_3 Virtual environment directory exists. Activated a virtualenv for Galaxy /scratch/rico/.planemo/gx_venv_3 /scratch/rico/galaxy /scratch/rico/.planemo/gx_venv_3/bin/python /scratch/rico/.planemo/gx_venv_3/bin/pip /scratch/rico/.planemo/gx_venv_3 /scratch/rico/.planemo/gx_venv_3 . .. check_model.sh .ci .circleci CITATION client CODE_OF_CONDUCT.md config contrib CONTRIBUTING.md CONTRIBUTORS.md .coveragerc cron database doc .dockerignore extract_dataset_parts.sh .flake8 .git .gitattributes .git-blame-ignore-revs .github .gitignore .gitpod.yml hooks .isort.cfg .k8s_ci.Dockerfile lib LICENSE.txt main.log Makefile manage_db.sh manage_toolshed_db.sh mypy.ini package.json packages .pre-commit-config.yaml.sample pyproject.toml pytest.ini README.rst .redocly.lint-ignore.yaml .redocly.yaml requirements.txt rolling_restart.sh run_reports.sh run.sh run_tests.sh run_tool_shed.sh scripts SECURITY.md static templates test test-data tool-data tools tox.ini tsconfig.json .vscode Activating virtualenv at /scratch/rico/.planemo/gx_venv_3 Requirement already satisfied: pip>=20.3 in /scratch/rico/.planemo/gx_venv_3/lib/python3.7/site-packages (23.3.2) Requirement already satisfied: wheel in /scratch/rico/.planemo/gx_venv_3/lib/python3.7/site-packages (0.42.0) [notice] A new release of pip is available: 23.3.2 -> 24.0 [notice] To update, run: pip install --upgrade pip Looking in indexes: https://wheels.galaxyproject.org/simple, https://pypi.python.org/simple Ignoring billiard: markers 'python_version >= "3.8" and python_version < "3.12"' don't match your environment Ignoring celery: markers 'python_version >= "3.8" and python_version < "3.12"' don't match your environment Ignoring colorama: markers 'python_version >= "3.7" and python_version < "3.12" and platform_system == "Windows"' don't match your environment Ignoring kombu: markers 'python_version >= "3.8" and python_version < "3.12"' don't match your environment Ignoring numpy: markers 'python_version >= "3.8" and python_version < "3.9"' don't match your environment Ignoring numpy: markers 'python_version >= "3.9" and python_version < "3.12"' don't match your environment Ignoring pyreadline3: markers 'sys_platform == "win32" and python_version >= "3.8" and python_version < "3.12"' don't match your environment Ignoring pyreadline: markers 'sys_platform == "win32" and python_version < "3.8" and python_version >= "3.7"' don't match your environment Ignoring tzdata: markers 'python_version >= "3.7" and python_version < "3.12" and platform_system == "Windows"' don't match your environment Collecting a2wsgi==1.7.0 (from -r requirements.txt (line 1)) Using cached a2wsgi-1.7.0-py3-none-any.whl.metadata (1.6 kB) Collecting adal==1.2.7 (from -r requirements.txt (line 2)) Using cached adal-1.2.7-py2.py3-none-any.whl (55 kB) Collecting aiobotocore==2.4.2 (from -r requirements.txt (line 3)) Using cached aiobotocore-2.4.2-py3-none-any.whl.metadata (19 kB) Collecting aiodataloader==0.4.0 (from -r requirements.txt (line 4)) Using cached aiodataloader-0.4.0-py3-none-any.whl.metadata (16 kB) Collecting aiofiles==23.2.1 (from -r requirements.txt (line 5)) Using cached aiofiles-23.2.1-py3-none-any.whl.metadata (9.7 kB) Collecting aiohttp==3.8.6 (from -r requirements.txt (line 6)) Using cached aiohttp-3.8.6-cp37-cp37m-manylinux_2_17_x86_64.manylinux2014_x86_64.whl.metadata (7.7 kB) Collecting aioitertools==0.11.0 (from -r requirements.txt (line 7)) Using cached aioitertools-0.11.0-py3-none-any.whl.metadata (3.3 kB) Collecting aiosignal==1.3.1 (from -r requirements.txt (line 8)) Using cached aiosignal-1.3.1-py3-none-any.whl.metadata (4.0 kB) Collecting alembic==1.12.1 (from -r requirements.txt (line 9)) Using cached alembic-1.12.1-py3-none-any.whl.metadata (7.3 kB) Collecting amqp==5.2.0 (from -r requirements.txt (line 10)) Using cached amqp-5.2.0-py3-none-any.whl.metadata (8.9 kB) Collecting aniso8601==9.0.1 (from -r requirements.txt (line 11)) Using cached aniso8601-9.0.1-py2.py3-none-any.whl (52 kB) Collecting anyio==3.7.1 (from -r requirements.txt (line 12)) Using cached anyio-3.7.1-py3-none-any.whl.metadata (4.7 kB) Collecting apispec==6.3.0 (from -r requirements.txt (line 13)) Using cached apispec-6.3.0-py3-none-any.whl.metadata (11 kB) Collecting appdirs==1.4.4 (from -r requirements.txt (line 14)) Using cached appdirs-1.4.4-py2.py3-none-any.whl (9.6 kB) Collecting arcp==0.2.1 (from -r requirements.txt (line 15)) Using cached arcp-0.2.1-py2.py3-none-any.whl (15 kB) Collecting argcomplete==3.1.2 (from -r requirements.txt (line 16)) Using cached argcomplete-3.1.2-py3-none-any.whl.metadata (16 kB) Collecting async-timeout==4.0.3 (from -r requirements.txt (line 17)) Using cached async_timeout-4.0.3-py3-none-any.whl.metadata (4.2 kB) Collecting asynctest==0.13.0 (from -r requirements.txt (line 18)) Using cached asynctest-0.13.0-py3-none-any.whl (26 kB) Collecting attmap==0.13.2 (from -r requirements.txt (line 19)) Using cached attmap-0.13.2-py3-none-any.whl (12 kB) Collecting attrs==23.1.0 (from -r requirements.txt (line 20)) Using cached attrs-23.1.0-py3-none-any.whl.metadata (11 kB) Collecting babel==2.13.1 (from -r requirements.txt (line 21)) Using cached Babel-2.13.1-py3-none-any.whl.metadata (1.6 kB) Collecting backports-zoneinfo==0.2.1 (from -r requirements.txt (line 22)) Using cached backports.zoneinfo-0.2.1-cp37-cp37m-manylinux1_x86_64.whl (70 kB) Collecting bagit-profile==1.3.1 (from -r requirements.txt (line 23)) Using cached bagit_profile-1.3.1-py3-none-any.whl (14 kB) Collecting bagit==1.8.1 (from -r requirements.txt (line 24)) Using cached bagit-1.8.1-py2.py3-none-any.whl (35 kB) Collecting bcrypt==4.0.1 (from -r requirements.txt (line 25)) Using cached bcrypt-4.0.1-cp36-abi3-manylinux_2_28_x86_64.whl.metadata (9.0 kB) Collecting bdbag==1.7.1 (from -r requirements.txt (line 26)) Using cached bdbag-1.7.1-py2.py3-none-any.whl.metadata (7.8 kB) Collecting beaker==1.12.1 (from -r requirements.txt (line 27)) Using cached Beaker-1.12.1-py3-none-any.whl Collecting billiard==3.6.4.0 (from -r requirements.txt (line 28)) Using cached billiard-3.6.4.0-py3-none-any.whl (89 kB) Collecting bioblend==1.2.0 (from -r requirements.txt (line 30)) Using cached bioblend-1.2.0-py2.py3-none-any.whl.metadata (2.3 kB) Collecting bleach==6.0.0 (from -r requirements.txt (line 31)) Using cached bleach-6.0.0-py3-none-any.whl.metadata (29 kB) Collecting boltons==23.1.1 (from -r requirements.txt (line 32)) Using cached boltons-23.1.1-py2.py3-none-any.whl.metadata (1.4 kB) Collecting boto==2.49.0 (from -r requirements.txt (line 33)) Using cached boto-2.49.0-py2.py3-none-any.whl (1.4 MB) Collecting botocore==1.27.59 (from -r requirements.txt (line 34)) Using cached botocore-1.27.59-py3-none-any.whl.metadata (5.9 kB) Collecting bx-python==0.10.0 (from -r requirements.txt (line 35)) Using cached bx_python-0.10.0-cp37-cp37m-manylinux_2_17_x86_64.manylinux2014_x86_64.whl.metadata (3.0 kB) Collecting cachecontrol==0.13.1 (from cachecontrol[filecache]==0.13.1->-r requirements.txt (line 36)) Using cached cachecontrol-0.13.1-py3-none-any.whl.metadata (3.0 kB) Collecting cached-property==1.5.2 (from -r requirements.txt (line 37)) Using cached cached_property-1.5.2-py2.py3-none-any.whl (7.6 kB) Collecting celery==5.2.7 (from -r requirements.txt (line 38)) Using cached celery-5.2.7-py3-none-any.whl.metadata (20 kB) Collecting certifi==2023.11.17 (from -r requirements.txt (line 40)) Using cached certifi-2023.11.17-py3-none-any.whl.metadata (2.2 kB) Collecting cffi==1.15.1 (from -r requirements.txt (line 41)) Using cached cffi-1.15.1-cp37-cp37m-manylinux_2_17_x86_64.manylinux2014_x86_64.whl.metadata (1.1 kB) Collecting charset-normalizer==3.3.2 (from -r requirements.txt (line 42)) Using cached charset_normalizer-3.3.2-cp37-cp37m-manylinux_2_17_x86_64.manylinux2014_x86_64.whl.metadata (33 kB) Collecting cheetah3==3.2.6.post1 (from -r requirements.txt (line 43)) Using cached https://wheels.galaxyproject.org/simple/cheetah3/Cheetah3-3.2.6.post1-cp37-cp37m-manylinux_2_5_x86_64.manylinux1_x86_64.manylinux_2_17_x86_64.manylinux2014_x86_64.whl (199 kB) Collecting circus==0.18.0 (from -r requirements.txt (line 44)) Using cached circus-0.18.0-py3-none-any.whl.metadata (2.0 kB) Collecting click-didyoumean==0.3.0 (from -r requirements.txt (line 45)) Using cached click_didyoumean-0.3.0-py3-none-any.whl (2.7 kB) Collecting click-plugins==1.1.1 (from -r requirements.txt (line 46)) Using cached click_plugins-1.1.1-py2.py3-none-any.whl (7.5 kB) Collecting click-repl==0.3.0 (from -r requirements.txt (line 47)) Using cached click_repl-0.3.0-py3-none-any.whl.metadata (3.6 kB) Collecting click==8.1.7 (from -r requirements.txt (line 48)) Using cached click-8.1.7-py3-none-any.whl.metadata (3.0 kB) Collecting cloudauthz==0.6.0 (from -r requirements.txt (line 49)) Using cached cloudauthz-0.6.0-py2.py3-none-any.whl (8.9 kB) Collecting cloudbridge==3.2.0 (from -r requirements.txt (line 50)) Using cached cloudbridge-3.2.0-py2.py3-none-any.whl.metadata (5.0 kB) Collecting coloredlogs==15.0.1 (from -r requirements.txt (line 52)) Using cached coloredlogs-15.0.1-py2.py3-none-any.whl (46 kB) Collecting conda-package-streaming==0.9.0 (from -r requirements.txt (line 53)) Using cached conda_package_streaming-0.9.0-py3-none-any.whl.metadata (4.5 kB) Collecting cryptography==41.0.5 (from -r requirements.txt (line 54)) Using cached cryptography-41.0.5-cp37-abi3-manylinux_2_28_x86_64.whl.metadata (5.2 kB) Collecting cwl-upgrader==1.2.8 (from -r requirements.txt (line 55)) Using cached cwl_upgrader-1.2.8-py3-none-any.whl.metadata (2.5 kB) Collecting cwl-utils==0.28 (from -r requirements.txt (line 56)) Using cached cwl_utils-0.28-py3-none-any.whl.metadata (7.1 kB) Collecting cwltool==3.1.20221109155812 (from -r requirements.txt (line 57)) Using cached cwltool-3.1.20221109155812-py3-none-any.whl.metadata (40 kB) Collecting decorator==5.1.1 (from -r requirements.txt (line 58)) Using cached decorator-5.1.1-py3-none-any.whl (9.1 kB) Collecting defusedxml==0.7.1 (from -r requirements.txt (line 59)) Using cached defusedxml-0.7.1-py2.py3-none-any.whl (25 kB) Collecting deprecation==2.1.0 (from -r requirements.txt (line 60)) Using cached deprecation-2.1.0-py2.py3-none-any.whl (11 kB) Collecting dictobj==0.4 (from -r requirements.txt (line 61)) Using cached dictobj-0.4-py3-none-any.whl Collecting dnspython==2.3.0 (from -r requirements.txt (line 62)) Using cached dnspython-2.3.0-py3-none-any.whl.metadata (5.2 kB) Collecting docopt==0.6.2 (from -r requirements.txt (line 63)) Using cached https://wheels.galaxyproject.org/simple/docopt/docopt-0.6.2-py2.py3-none-any.whl (19 kB) Collecting docutils==0.18.1 (from -r requirements.txt (line 64)) Using cached docutils-0.18.1-py2.py3-none-any.whl (570 kB) Collecting dparse==0.6.3 (from -r requirements.txt (line 65)) Using cached dparse-0.6.3-py3-none-any.whl.metadata (7.4 kB) Collecting ecdsa==0.18.0 (from -r requirements.txt (line 66)) Using cached ecdsa-0.18.0-py2.py3-none-any.whl.metadata (29 kB) Collecting edam-ontology==1.25.2 (from -r requirements.txt (line 67)) Using cached edam_ontology-1.25.2-py2.py3-none-any.whl (262 kB) Collecting email-validator==2.0.0.post2 (from -r requirements.txt (line 68)) Using cached email_validator-2.0.0.post2-py3-none-any.whl.metadata (25 kB) Collecting exceptiongroup==1.2.0 (from -r requirements.txt (line 69)) Using cached exceptiongroup-1.2.0-py3-none-any.whl.metadata (6.6 kB) Collecting fastapi-utils==0.2.1 (from -r requirements.txt (line 70)) Using cached fastapi_utils-0.2.1-py3-none-any.whl (16 kB) Collecting fastapi==0.98.0 (from -r requirements.txt (line 71)) Using cached fastapi-0.98.0-py3-none-any.whl.metadata (22 kB) Collecting filelock==3.12.2 (from -r requirements.txt (line 72)) Using cached filelock-3.12.2-py3-none-any.whl.metadata (2.7 kB) Collecting frozenlist==1.3.3 (from -r requirements.txt (line 73)) Using cached frozenlist-1.3.3-cp37-cp37m-manylinux_2_5_x86_64.manylinux1_x86_64.manylinux_2_17_x86_64.manylinux2014_x86_64.whl.metadata (4.7 kB) Collecting fs==2.4.16 (from -r requirements.txt (line 74)) Using cached fs-2.4.16-py2.py3-none-any.whl.metadata (6.3 kB) Collecting fsspec==2023.1.0 (from -r requirements.txt (line 75)) Using cached fsspec-2023.1.0-py3-none-any.whl.metadata (5.5 kB) Collecting future==0.18.3 (from -r requirements.txt (line 76)) Using cached future-0.18.3-py3-none-any.whl Collecting galaxy-sequence-utils==1.1.5 (from -r requirements.txt (line 77)) Using cached galaxy_sequence_utils-1.1.5-py2.py3-none-any.whl (37 kB) Collecting galaxy2cwl==0.1.4 (from -r requirements.txt (line 78)) Using cached galaxy2cwl-0.1.4-py3-none-any.whl (8.2 kB) Collecting graphene-sqlalchemy==3.0.0b3 (from -r requirements.txt (line 79)) Using cached graphene_sqlalchemy-3.0.0b3-py2.py3-none-any.whl.metadata (4.2 kB) Collecting graphene==3.3 (from -r requirements.txt (line 80)) Using cached graphene-3.3-py2.py3-none-any.whl.metadata (7.7 kB) Collecting graphql-core==3.2.3 (from -r requirements.txt (line 81)) Using cached graphql_core-3.2.3-py3-none-any.whl.metadata (10 kB) Collecting graphql-relay==3.2.0 (from -r requirements.txt (line 82)) Using cached graphql_relay-3.2.0-py3-none-any.whl.metadata (12 kB) Collecting gravity==1.0.4 (from -r requirements.txt (line 83)) Using cached gravity-1.0.4-py3-none-any.whl.metadata (14 kB) Collecting greenlet==2.0.2 (from -r requirements.txt (line 84)) Using cached greenlet-2.0.2-cp37-cp37m-manylinux_2_17_x86_64.manylinux2014_x86_64.whl.metadata (4.1 kB) Collecting gunicorn==21.2.0 (from -r requirements.txt (line 85)) Using cached gunicorn-21.2.0-py3-none-any.whl.metadata (4.1 kB) Collecting gxformat2==0.18.0 (from -r requirements.txt (line 86)) Using cached gxformat2-0.18.0-py2.py3-none-any.whl.metadata (11 kB) Collecting h11==0.14.0 (from -r requirements.txt (line 87)) Using cached h11-0.14.0-py3-none-any.whl.metadata (8.2 kB) Collecting h5grove==1.3.0 (from -r requirements.txt (line 88)) Using cached h5grove-1.3.0-py3-none-any.whl.metadata (3.4 kB) Collecting h5py==3.8.0 (from -r requirements.txt (line 89)) Using cached h5py-3.8.0-cp37-cp37m-manylinux_2_17_x86_64.manylinux2014_x86_64.whl.metadata (2.5 kB) Collecting humanfriendly==10.0 (from -r requirements.txt (line 90)) Using cached humanfriendly-10.0-py2.py3-none-any.whl (86 kB) Collecting idna==3.5 (from -r requirements.txt (line 91)) Using cached idna-3.5-py3-none-any.whl.metadata (9.9 kB) Collecting importlib-metadata==4.13.0 (from -r requirements.txt (line 92)) Using cached importlib_metadata-4.13.0-py3-none-any.whl.metadata (4.9 kB) Collecting importlib-resources==5.12.0 (from -r requirements.txt (line 93)) Using cached importlib_resources-5.12.0-py3-none-any.whl.metadata (4.1 kB) Collecting isa-rwval==0.10.10 (from -r requirements.txt (line 94)) Using cached isa_rwval-0.10.10-py2.py3-none-any.whl (50 kB) Collecting isal==1.3.0 (from -r requirements.txt (line 95)) Using cached isal-1.3.0-cp37-cp37m-manylinux_2_17_x86_64.manylinux2014_x86_64.whl.metadata (8.7 kB) Collecting isodate==0.6.1 (from -r requirements.txt (line 96)) Using cached isodate-0.6.1-py2.py3-none-any.whl (41 kB) Collecting jinja2==3.1.2 (from -r requirements.txt (line 97)) Using cached Jinja2-3.1.2-py3-none-any.whl.metadata (3.5 kB) Collecting jmespath==1.0.1 (from -r requirements.txt (line 98)) Using cached jmespath-1.0.1-py3-none-any.whl.metadata (7.6 kB) Collecting jsonref==1.1.0 (from -r requirements.txt (line 99)) Using cached jsonref-1.1.0-py3-none-any.whl.metadata (2.7 kB) Collecting jsonschema==4.17.3 (from -r requirements.txt (line 100)) Using cached jsonschema-4.17.3-py3-none-any.whl.metadata (7.9 kB) Collecting kombu==5.2.4 (from -r requirements.txt (line 101)) Using cached kombu-5.2.4-py3-none-any.whl.metadata (2.7 kB) Collecting lagom==2.6.0 (from -r requirements.txt (line 103)) Using cached lagom-2.6.0-py3-none-any.whl.metadata (6.6 kB) Collecting lxml==4.9.3 (from -r requirements.txt (line 104)) Using cached lxml-4.9.3-cp37-cp37m-manylinux_2_28_x86_64.whl.metadata (3.8 kB) Collecting mako==1.2.4 (from -r requirements.txt (line 105)) Using cached Mako-1.2.4-py3-none-any.whl.metadata (2.9 kB) Collecting markdown-it-py==2.2.0 (from -r requirements.txt (line 106)) Using cached markdown_it_py-2.2.0-py3-none-any.whl.metadata (6.8 kB) Collecting markdown==3.4.4 (from -r requirements.txt (line 107)) Using cached Markdown-3.4.4-py3-none-any.whl.metadata (6.9 kB) Collecting markupsafe==2.1.3 (from -r requirements.txt (line 108)) Using cached MarkupSafe-2.1.3-cp37-cp37m-manylinux_2_17_x86_64.manylinux2014_x86_64.whl.metadata (3.0 kB) Collecting mdurl==0.1.2 (from -r requirements.txt (line 109)) Using cached mdurl-0.1.2-py3-none-any.whl.metadata (1.6 kB) Collecting mercurial==6.6 (from -r requirements.txt (line 110)) Using cached https://wheels.galaxyproject.org/simple/mercurial/mercurial-6.6-cp37-cp37m-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (5.2 MB) Collecting mistune==2.0.5 (from -r requirements.txt (line 111)) Using cached mistune-2.0.5-py2.py3-none-any.whl.metadata (1.5 kB) Collecting mrcfile==1.4.3 (from -r requirements.txt (line 112)) Using cached mrcfile-1.4.3-py2.py3-none-any.whl.metadata (6.8 kB) Collecting msal==1.25.0 (from -r requirements.txt (line 113)) Using cached msal-1.25.0-py2.py3-none-any.whl.metadata (11 kB) Collecting msgpack==1.0.5 (from -r requirements.txt (line 114)) Using cached msgpack-1.0.5-cp37-cp37m-manylinux_2_17_x86_64.manylinux2014_x86_64.whl.metadata (8.8 kB) Collecting multidict==6.0.4 (from -r requirements.txt (line 115)) Using cached multidict-6.0.4-cp37-cp37m-manylinux_2_17_x86_64.manylinux2014_x86_64.whl.metadata (4.1 kB) Collecting mypy-extensions==1.0.0 (from -r requirements.txt (line 116)) Using cached mypy_extensions-1.0.0-py3-none-any.whl.metadata (1.1 kB) Collecting networkx==2.5 (from -r requirements.txt (line 117)) Using cached networkx-2.5-py3-none-any.whl (1.6 MB) Collecting nodeenv==1.8.0 (from -r requirements.txt (line 118)) Using cached nodeenv-1.8.0-py2.py3-none-any.whl.metadata (21 kB) Collecting numpy==1.21.6 (from -r requirements.txt (line 119)) Using cached numpy-1.21.6-cp37-cp37m-manylinux_2_12_x86_64.manylinux2010_x86_64.whl.metadata (2.1 kB) Collecting oauthlib==3.2.2 (from -r requirements.txt (line 122)) Using cached oauthlib-3.2.2-py3-none-any.whl.metadata (7.5 kB) Collecting orjson==3.9.7 (from -r requirements.txt (line 123)) Using cached orjson-3.9.7-cp37-cp37m-manylinux_2_17_x86_64.manylinux2014_x86_64.whl.metadata (49 kB) Collecting oyaml==1.0 (from -r requirements.txt (line 124)) Using cached oyaml-1.0-py2.py3-none-any.whl (3.0 kB) Collecting packaging==23.2 (from -r requirements.txt (line 125)) Using cached packaging-23.2-py3-none-any.whl.metadata (3.2 kB) Collecting paramiko==3.3.1 (from -r requirements.txt (line 126)) Using cached paramiko-3.3.1-py3-none-any.whl.metadata (4.4 kB) Collecting parsley==1.3 (from -r requirements.txt (line 127)) Using cached Parsley-1.3-py2.py3-none-any.whl (88 kB) Collecting paste==3.7.1 (from -r requirements.txt (line 128)) Using cached Paste-3.7.1-py3-none-any.whl.metadata (4.9 kB) Collecting pastedeploy==3.1.0 (from -r requirements.txt (line 129)) Using cached PasteDeploy-3.1.0-py3-none-any.whl.metadata (2.7 kB) Collecting pebble==5.0.4 (from -r requirements.txt (line 130)) Using cached Pebble-5.0.4-py3-none-any.whl.metadata (3.6 kB) Collecting pkgutil-resolve-name==1.3.10 (from -r requirements.txt (line 131)) Using cached pkgutil_resolve_name-1.3.10-py3-none-any.whl (4.7 kB) Collecting promise==2.3 (from -r requirements.txt (line 132)) Using cached promise-2.3-py3-none-any.whl Collecting prompt-toolkit==3.0.41 (from -r requirements.txt (line 133)) Using cached prompt_toolkit-3.0.41-py3-none-any.whl.metadata (6.5 kB) Collecting prov==1.5.1 (from -r requirements.txt (line 134)) Using cached prov-1.5.1-py2.py3-none-any.whl (426 kB) Collecting psutil==5.9.6 (from -r requirements.txt (line 135)) Using cached psutil-5.9.6-cp36-abi3-manylinux_2_12_x86_64.manylinux2010_x86_64.manylinux_2_17_x86_64.manylinux2014_x86_64.whl.metadata (21 kB) Collecting pulsar-galaxy-lib==0.15.5 (from -r requirements.txt (line 136)) Using cached pulsar_galaxy_lib-0.15.5-py2.py3-none-any.whl.metadata (33 kB) Collecting pyasn1==0.5.1 (from -r requirements.txt (line 137)) Using cached pyasn1-0.5.1-py2.py3-none-any.whl.metadata (8.6 kB) Collecting pycparser==2.21 (from -r requirements.txt (line 138)) Using cached pycparser-2.21-py2.py3-none-any.whl (118 kB) Collecting pycryptodome==3.19.0 (from -r requirements.txt (line 139)) Using cached pycryptodome-3.19.0-cp35-abi3-manylinux_2_17_x86_64.manylinux2014_x86_64.whl.metadata (3.4 kB) Collecting pydantic-tes==0.1.5 (from -r requirements.txt (line 140)) Using cached pydantic_tes-0.1.5-py2.py3-none-any.whl.metadata (2.9 kB) Collecting pydantic==1.10.13 (from -r requirements.txt (line 141)) Using cached pydantic-1.10.13-cp37-cp37m-manylinux_2_17_x86_64.manylinux2014_x86_64.whl.metadata (149 kB) Collecting pydot==1.4.2 (from -r requirements.txt (line 143)) Using cached pydot-1.4.2-py2.py3-none-any.whl (21 kB) Collecting pyeventsystem==0.1.0 (from -r requirements.txt (line 144)) Using cached pyeventsystem-0.1.0-py2.py3-none-any.whl (15 kB) Collecting pyfaidx==0.7.2.2 (from -r requirements.txt (line 145)) Using cached pyfaidx-0.7.2.2-py3-none-any.whl.metadata (25 kB) Collecting pygments==2.17.2 (from -r requirements.txt (line 146)) Using cached pygments-2.17.2-py3-none-any.whl.metadata (2.6 kB) Collecting pyjwt==2.8.0 (from -r requirements.txt (line 147)) Using cached PyJWT-2.8.0-py3-none-any.whl.metadata (4.2 kB) Collecting pykwalify==1.8.0 (from -r requirements.txt (line 149)) Using cached pykwalify-1.8.0-py2.py3-none-any.whl (24 kB) Collecting pylibmagic==0.5.0 (from -r requirements.txt (line 150)) Using cached pylibmagic-0.5.0-py3-none-manylinux_2_17_x86_64.manylinux2014_x86_64.whl.metadata (5.5 kB) Collecting pynacl==1.5.0 (from -r requirements.txt (line 151)) Using cached PyNaCl-1.5.0-cp36-abi3-manylinux_2_17_x86_64.manylinux2014_x86_64.manylinux_2_24_x86_64.whl (856 kB) Collecting pyparsing==3.0.9 (from -r requirements.txt (line 152)) Using cached pyparsing-3.0.9-py3-none-any.whl.metadata (4.2 kB) Collecting pyrsistent==0.19.3 (from -r requirements.txt (line 155)) Using cached pyrsistent-0.19.3-py3-none-any.whl.metadata (27 kB) Collecting pysam==0.22.0 (from -r requirements.txt (line 156)) Using cached pysam-0.22.0-cp37-cp37m-manylinux_2_28_x86_64.whl.metadata (1.5 kB) Collecting python-dateutil==2.8.2 (from -r requirements.txt (line 157)) Using cached python_dateutil-2.8.2-py2.py3-none-any.whl (247 kB) Collecting python-jose==3.3.0 (from -r requirements.txt (line 158)) Using cached python_jose-3.3.0-py2.py3-none-any.whl (33 kB) Collecting python-magic==0.4.27 (from -r requirements.txt (line 159)) Using cached python_magic-0.4.27-py2.py3-none-any.whl.metadata (5.8 kB) Collecting python-multipart==0.0.7 (from -r requirements.txt (line 160)) Using cached python_multipart-0.0.7-py3-none-any.whl.metadata (2.5 kB) Collecting python3-openid==3.2.0 (from -r requirements.txt (line 161)) Using cached python3_openid-3.2.0-py3-none-any.whl (133 kB) Collecting pytz==2023.3.post1 (from -r requirements.txt (line 162)) Using cached pytz-2023.3.post1-py2.py3-none-any.whl.metadata (22 kB) Collecting pyyaml==6.0.1 (from -r requirements.txt (line 163)) Using cached PyYAML-6.0.1-cp37-cp37m-manylinux_2_17_x86_64.manylinux2014_x86_64.whl.metadata (2.1 kB) Collecting pyzmq==25.1.1 (from -r requirements.txt (line 164)) Using cached pyzmq-25.1.1-cp37-cp37m-manylinux_2_5_x86_64.manylinux1_x86_64.whl.metadata (4.9 kB) Collecting rdflib==6.2.0 (from -r requirements.txt (line 165)) Using cached rdflib-6.2.0-py3-none-any.whl.metadata (10 kB) Collecting refgenconf==0.12.2 (from -r requirements.txt (line 166)) Using cached refgenconf-0.12.2-py3-none-any.whl (72 kB) Collecting regex==2023.10.3 (from -r requirements.txt (line 167)) Using cached regex-2023.10.3-cp37-cp37m-manylinux_2_17_x86_64.manylinux2014_x86_64.whl.metadata (40 kB) Collecting repoze-lru==0.7 (from -r requirements.txt (line 168)) Using cached repoze.lru-0.7-py3-none-any.whl (10 kB) Collecting requests-oauthlib==1.3.1 (from -r requirements.txt (line 169)) Using cached requests_oauthlib-1.3.1-py2.py3-none-any.whl.metadata (10 kB) Collecting requests-toolbelt==1.0.0 (from -r requirements.txt (line 170)) Using cached requests_toolbelt-1.0.0-py2.py3-none-any.whl.metadata (14 kB) Collecting requests-unixsocket==0.3.0 (from -r requirements.txt (line 171)) Using cached requests_unixsocket-0.3.0-py2.py3-none-any.whl (11 kB) Collecting requests==2.31.0 (from -r requirements.txt (line 172)) Using cached requests-2.31.0-py3-none-any.whl.metadata (4.6 kB) Collecting rich==13.7.0 (from -r requirements.txt (line 173)) Using cached rich-13.7.0-py3-none-any.whl.metadata (18 kB) Collecting rocrate==0.9.0 (from -r requirements.txt (line 174)) Using cached rocrate-0.9.0-py3-none-any.whl.metadata (15 kB) Collecting routes==2.5.1 (from -r requirements.txt (line 175)) Using cached Routes-2.5.1-py2.py3-none-any.whl (40 kB) Collecting rsa==4.9 (from -r requirements.txt (line 176)) Using cached rsa-4.9-py3-none-any.whl.metadata (4.2 kB) Collecting ruamel-yaml-clib==0.2.8 (from -r requirements.txt (line 177)) Using cached ruamel.yaml.clib-0.2.8-cp37-cp37m-manylinux_2_5_x86_64.manylinux1_x86_64.whl.metadata (2.2 kB) Collecting ruamel-yaml==0.17.21 (from -r requirements.txt (line 178)) Using cached ruamel.yaml-0.17.21-py3-none-any.whl.metadata (13 kB) Collecting s3fs==2023.1.0 (from -r requirements.txt (line 179)) Using cached s3fs-2023.1.0-py3-none-any.whl.metadata (1.5 kB) Collecting schema-salad==8.4.20230808163024 (from -r requirements.txt (line 180)) Using cached schema_salad-8.4.20230808163024-cp37-cp37m-manylinux_2_17_x86_64.manylinux2014_x86_64.manylinux_2_28_x86_64.whl.metadata (16 kB) Collecting setuptools-scm==5.0.2 (from -r requirements.txt (line 181)) Using cached setuptools_scm-5.0.2-py2.py3-none-any.whl (29 kB) Requirement already satisfied: setuptools==68.0.0 in /scratch/rico/.planemo/gx_venv_3/lib/python3.7/site-packages (from -r requirements.txt (line 182)) (68.0.0) Collecting shellescape==3.8.1 (from -r requirements.txt (line 183)) Using cached shellescape-3.8.1-py2.py3-none-any.whl (3.1 kB) Collecting six==1.16.0 (from -r requirements.txt (line 184)) Using cached six-1.16.0-py2.py3-none-any.whl (11 kB) Collecting sniffio==1.3.0 (from -r requirements.txt (line 185)) Using cached sniffio-1.3.0-py3-none-any.whl.metadata (3.6 kB) Collecting social-auth-core==4.0.3 (from social-auth-core[openidconnect]==4.0.3->-r requirements.txt (line 186)) Using cached social_auth_core-4.0.3-py3-none-any.whl (328 kB) Collecting sortedcontainers==2.4.0 (from -r requirements.txt (line 187)) Using cached sortedcontainers-2.4.0-py2.py3-none-any.whl (29 kB) Collecting sqlalchemy==1.4.50 (from -r requirements.txt (line 188)) Using cached SQLAlchemy-1.4.50-cp37-cp37m-manylinux_2_5_x86_64.manylinux1_x86_64.manylinux_2_17_x86_64.manylinux2014_x86_64.whl.metadata (10.0 kB) Collecting sqlitedict==2.1.0 (from -r requirements.txt (line 189)) Using cached sqlitedict-2.1.0-py3-none-any.whl Collecting sqlparse==0.4.4 (from -r requirements.txt (line 190)) Using cached sqlparse-0.4.4-py3-none-any.whl.metadata (4.0 kB) Collecting starlette-context==0.3.5 (from -r requirements.txt (line 191)) Using cached starlette_context-0.3.5-py37-none-any.whl.metadata (3.6 kB) Collecting starlette-graphene3==0.6.0 (from -r requirements.txt (line 192)) Using cached starlette_graphene3-0.6.0-py3-none-any.whl.metadata (4.2 kB) Collecting starlette==0.27.0 (from -r requirements.txt (line 193)) Using cached starlette-0.27.0-py3-none-any.whl.metadata (5.8 kB) Collecting supervisor==4.2.5 (from -r requirements.txt (line 194)) Using cached supervisor-4.2.5-py2.py3-none-any.whl.metadata (86 kB) Collecting svgwrite==1.4.3 (from -r requirements.txt (line 195)) Using cached svgwrite-1.4.3-py3-none-any.whl.metadata (8.8 kB) Collecting tenacity==8.2.3 (from -r requirements.txt (line 196)) Using cached tenacity-8.2.3-py3-none-any.whl.metadata (1.0 kB) Collecting tifffile==2021.11.2 (from -r requirements.txt (line 197)) Using cached tifffile-2021.11.2-py3-none-any.whl (178 kB) Collecting tinydb==4.8.0 (from -r requirements.txt (line 198)) Using cached tinydb-4.8.0-py3-none-any.whl.metadata (6.2 kB) Collecting tomli==2.0.1 (from -r requirements.txt (line 199)) Using cached tomli-2.0.1-py3-none-any.whl.metadata (8.9 kB) Collecting tornado==6.2 (from -r requirements.txt (line 200)) Using cached tornado-6.2-cp37-abi3-manylinux_2_5_x86_64.manylinux1_x86_64.manylinux_2_17_x86_64.manylinux2014_x86_64.whl.metadata (2.5 kB) Collecting tqdm==4.66.1 (from -r requirements.txt (line 201)) Using cached tqdm-4.66.1-py3-none-any.whl.metadata (57 kB) Collecting tuspy==1.0.1 (from -r requirements.txt (line 202)) Using cached tuspy-1.0.1-py3-none-any.whl.metadata (3.5 kB) Collecting tuswsgi==0.5.5 (from -r requirements.txt (line 203)) Using cached tuswsgi-0.5.5-py2.py3-none-any.whl.metadata (2.2 kB) Collecting typing-extensions==4.7.1 (from -r requirements.txt (line 204)) Using cached typing_extensions-4.7.1-py3-none-any.whl.metadata (3.1 kB) Collecting tzlocal==5.1 (from -r requirements.txt (line 206)) Using cached tzlocal-5.1-py3-none-any.whl.metadata (16 kB) Collecting ubiquerg==0.6.3 (from -r requirements.txt (line 207)) Using cached ubiquerg-0.6.3-py2.py3-none-any.whl.metadata (1.9 kB) Collecting urllib3==1.26.18 (from -r requirements.txt (line 208)) Using cached urllib3-1.26.18-py2.py3-none-any.whl.metadata (48 kB) Collecting uvicorn==0.22.0 (from -r requirements.txt (line 209)) Using cached uvicorn-0.22.0-py3-none-any.whl.metadata (6.3 kB) Collecting uvloop==0.18.0 (from -r requirements.txt (line 210)) Using cached uvloop-0.18.0-cp37-cp37m-manylinux_2_17_x86_64.manylinux2014_x86_64.whl.metadata (4.9 kB) Collecting vine==5.1.0 (from -r requirements.txt (line 211)) Using cached vine-5.1.0-py3-none-any.whl.metadata (2.7 kB) Collecting wcwidth==0.2.12 (from -r requirements.txt (line 212)) Using cached wcwidth-0.2.12-py2.py3-none-any.whl.metadata (14 kB) Collecting webencodings==0.5.1 (from -r requirements.txt (line 213)) Using cached webencodings-0.5.1-py2.py3-none-any.whl (11 kB) Collecting webob==1.8.7 (from -r requirements.txt (line 214)) Using cached WebOb-1.8.7-py2.py3-none-any.whl (114 kB) Collecting whoosh==2.7.4 (from -r requirements.txt (line 215)) Using cached Whoosh-2.7.4-py2.py3-none-any.whl (468 kB) Collecting wrapt==1.16.0 (from -r requirements.txt (line 216)) Using cached wrapt-1.16.0-cp37-cp37m-manylinux_2_5_x86_64.manylinux1_x86_64.manylinux_2_17_x86_64.manylinux2014_x86_64.whl.metadata (6.6 kB) Collecting yacman==0.9.2 (from -r requirements.txt (line 217)) Using cached yacman-0.9.2-py3-none-any.whl.metadata (1.8 kB) Collecting yarl==1.9.3 (from -r requirements.txt (line 218)) Using cached yarl-1.9.3-cp37-cp37m-manylinux_2_17_x86_64.manylinux2014_x86_64.whl.metadata (28 kB) Collecting zipp==3.15.0 (from -r requirements.txt (line 219)) Using cached zipp-3.15.0-py3-none-any.whl.metadata (3.7 kB) Collecting zipstream-new==1.1.8 (from -r requirements.txt (line 220)) Using cached zipstream_new-1.1.8-py3-none-any.whl (20 kB) Collecting zstandard==0.21.0 (from -r requirements.txt (line 221)) Using cached zstandard-0.21.0-cp37-cp37m-manylinux_2_17_x86_64.manylinux2014_x86_64.whl.metadata (2.9 kB) Using cached a2wsgi-1.7.0-py3-none-any.whl (11 kB) Using cached aiobotocore-2.4.2-py3-none-any.whl (66 kB) Using cached aiodataloader-0.4.0-py3-none-any.whl (10 kB) Using cached aiofiles-23.2.1-py3-none-any.whl (15 kB) Using cached aiohttp-3.8.6-cp37-cp37m-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (987 kB) Using cached aioitertools-0.11.0-py3-none-any.whl (23 kB) Using cached aiosignal-1.3.1-py3-none-any.whl (7.6 kB) Using cached alembic-1.12.1-py3-none-any.whl (226 kB) Using cached amqp-5.2.0-py3-none-any.whl (50 kB) Using cached anyio-3.7.1-py3-none-any.whl (80 kB) Using cached apispec-6.3.0-py3-none-any.whl (29 kB) Using cached argcomplete-3.1.2-py3-none-any.whl (41 kB) Using cached async_timeout-4.0.3-py3-none-any.whl (5.7 kB) Using cached attrs-23.1.0-py3-none-any.whl (61 kB) Using cached Babel-2.13.1-py3-none-any.whl (10.1 MB) Using cached bcrypt-4.0.1-cp36-abi3-manylinux_2_28_x86_64.whl (593 kB) Using cached bdbag-1.7.1-py2.py3-none-any.whl (72 kB) Using cached bioblend-1.2.0-py2.py3-none-any.whl (156 kB) Using cached bleach-6.0.0-py3-none-any.whl (162 kB) Using cached boltons-23.1.1-py2.py3-none-any.whl (195 kB) Using cached botocore-1.27.59-py3-none-any.whl (9.1 MB) Using cached bx_python-0.10.0-cp37-cp37m-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (5.1 MB) Using cached cachecontrol-0.13.1-py3-none-any.whl (22 kB) Using cached celery-5.2.7-py3-none-any.whl (405 kB) Using cached certifi-2023.11.17-py3-none-any.whl (162 kB) Using cached cffi-1.15.1-cp37-cp37m-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (427 kB) Using cached charset_normalizer-3.3.2-cp37-cp37m-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (136 kB) Using cached circus-0.18.0-py3-none-any.whl (200 kB) Using cached click_repl-0.3.0-py3-none-any.whl (10 kB) Using cached click-8.1.7-py3-none-any.whl (97 kB) Using cached cloudbridge-3.2.0-py2.py3-none-any.whl (193 kB) Using cached conda_package_streaming-0.9.0-py3-none-any.whl (15 kB) Using cached cryptography-41.0.5-cp37-abi3-manylinux_2_28_x86_64.whl (4.4 MB) Using cached cwl_upgrader-1.2.8-py3-none-any.whl (27 kB) Using cached cwl_utils-0.28-py3-none-any.whl (313 kB) Using cached cwltool-3.1.20221109155812-py3-none-any.whl (1.3 MB) Using cached dnspython-2.3.0-py3-none-any.whl (283 kB) Using cached dparse-0.6.3-py3-none-any.whl (12 kB) Using cached ecdsa-0.18.0-py2.py3-none-any.whl (142 kB) Using cached email_validator-2.0.0.post2-py3-none-any.whl (31 kB) Using cached exceptiongroup-1.2.0-py3-none-any.whl (16 kB) Using cached fastapi-0.98.0-py3-none-any.whl (56 kB) Using cached filelock-3.12.2-py3-none-any.whl (10 kB) Using cached frozenlist-1.3.3-cp37-cp37m-manylinux_2_5_x86_64.manylinux1_x86_64.manylinux_2_17_x86_64.manylinux2014_x86_64.whl (148 kB) Using cached fs-2.4.16-py2.py3-none-any.whl (135 kB) Using cached fsspec-2023.1.0-py3-none-any.whl (143 kB) Using cached graphene_sqlalchemy-3.0.0b3-py2.py3-none-any.whl (45 kB) Using cached graphene-3.3-py2.py3-none-any.whl (128 kB) Using cached graphql_core-3.2.3-py3-none-any.whl (202 kB) Using cached graphql_relay-3.2.0-py3-none-any.whl (16 kB) Using cached gravity-1.0.4-py3-none-any.whl (44 kB) Using cached greenlet-2.0.2-cp37-cp37m-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (566 kB) Using cached gunicorn-21.2.0-py3-none-any.whl (80 kB) Using cached gxformat2-0.18.0-py2.py3-none-any.whl (53 kB) Using cached h11-0.14.0-py3-none-any.whl (58 kB) Using cached h5grove-1.3.0-py3-none-any.whl (15 kB) Using cached h5py-3.8.0-cp37-cp37m-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (4.3 MB) Using cached idna-3.5-py3-none-any.whl (61 kB) Using cached importlib_metadata-4.13.0-py3-none-any.whl (23 kB) Using cached importlib_resources-5.12.0-py3-none-any.whl (36 kB) Using cached isal-1.3.0-cp37-cp37m-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (250 kB) Using cached Jinja2-3.1.2-py3-none-any.whl (133 kB) Using cached jmespath-1.0.1-py3-none-any.whl (20 kB) Using cached jsonref-1.1.0-py3-none-any.whl (9.4 kB) Using cached jsonschema-4.17.3-py3-none-any.whl (90 kB) Using cached kombu-5.2.4-py3-none-any.whl (189 kB) Using cached lagom-2.6.0-py3-none-any.whl (36 kB) Using cached lxml-4.9.3-cp37-cp37m-manylinux_2_28_x86_64.whl (7.4 MB) Using cached Mako-1.2.4-py3-none-any.whl (78 kB) Using cached markdown_it_py-2.2.0-py3-none-any.whl (84 kB) Using cached Markdown-3.4.4-py3-none-any.whl (94 kB) Using cached MarkupSafe-2.1.3-cp37-cp37m-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (25 kB) Using cached mdurl-0.1.2-py3-none-any.whl (10.0 kB) Using cached mistune-2.0.5-py2.py3-none-any.whl (24 kB) Using cached mrcfile-1.4.3-py2.py3-none-any.whl (43 kB) Using cached msal-1.25.0-py2.py3-none-any.whl (97 kB) Using cached msgpack-1.0.5-cp37-cp37m-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (299 kB) Using cached multidict-6.0.4-cp37-cp37m-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (94 kB) Using cached mypy_extensions-1.0.0-py3-none-any.whl (4.7 kB) Using cached nodeenv-1.8.0-py2.py3-none-any.whl (22 kB) Using cached numpy-1.21.6-cp37-cp37m-manylinux_2_12_x86_64.manylinux2010_x86_64.whl (15.7 MB) Using cached oauthlib-3.2.2-py3-none-any.whl (151 kB) Using cached orjson-3.9.7-cp37-cp37m-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (138 kB) Using cached packaging-23.2-py3-none-any.whl (53 kB) Using cached paramiko-3.3.1-py3-none-any.whl (224 kB) Using cached Paste-3.7.1-py3-none-any.whl (281 kB) Using cached PasteDeploy-3.1.0-py3-none-any.whl (16 kB) Using cached Pebble-5.0.4-py3-none-any.whl (30 kB) Using cached prompt_toolkit-3.0.41-py3-none-any.whl (385 kB) Using cached psutil-5.9.6-cp36-abi3-manylinux_2_12_x86_64.manylinux2010_x86_64.manylinux_2_17_x86_64.manylinux2014_x86_64.whl (283 kB) Using cached pulsar_galaxy_lib-0.15.5-py2.py3-none-any.whl (200 kB) Using cached pyasn1-0.5.1-py2.py3-none-any.whl (84 kB) Using cached pycryptodome-3.19.0-cp35-abi3-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (2.1 MB) Using cached pydantic_tes-0.1.5-py2.py3-none-any.whl (12 kB) Using cached pydantic-1.10.13-cp37-cp37m-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (3.1 MB) Using cached pyfaidx-0.7.2.2-py3-none-any.whl (28 kB) Using cached pygments-2.17.2-py3-none-any.whl (1.2 MB) Using cached PyJWT-2.8.0-py3-none-any.whl (22 kB) Using cached pylibmagic-0.5.0-py3-none-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (619 kB) Using cached pyparsing-3.0.9-py3-none-any.whl (98 kB) Using cached pyrsistent-0.19.3-py3-none-any.whl (57 kB) Using cached pysam-0.22.0-cp37-cp37m-manylinux_2_28_x86_64.whl (23.6 MB) Using cached python_magic-0.4.27-py2.py3-none-any.whl (13 kB) Using cached python_multipart-0.0.7-py3-none-any.whl (22 kB) Using cached pytz-2023.3.post1-py2.py3-none-any.whl (502 kB) Using cached PyYAML-6.0.1-cp37-cp37m-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (670 kB) Using cached pyzmq-25.1.1-cp37-cp37m-manylinux_2_5_x86_64.manylinux1_x86_64.whl (1.1 MB) Using cached rdflib-6.2.0-py3-none-any.whl (500 kB) Using cached regex-2023.10.3-cp37-cp37m-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (761 kB) Using cached requests_oauthlib-1.3.1-py2.py3-none-any.whl (23 kB) Using cached requests_toolbelt-1.0.0-py2.py3-none-any.whl (54 kB) Using cached requests-2.31.0-py3-none-any.whl (62 kB) Using cached rich-13.7.0-py3-none-any.whl (240 kB) Using cached rocrate-0.9.0-py3-none-any.whl (325 kB) Using cached rsa-4.9-py3-none-any.whl (34 kB) Using cached ruamel.yaml.clib-0.2.8-cp37-cp37m-manylinux_2_5_x86_64.manylinux1_x86_64.whl (551 kB) Using cached ruamel.yaml-0.17.21-py3-none-any.whl (109 kB) Using cached s3fs-2023.1.0-py3-none-any.whl (27 kB) Using cached schema_salad-8.4.20230808163024-cp37-cp37m-manylinux_2_17_x86_64.manylinux2014_x86_64.manylinux_2_28_x86_64.whl (1.0 MB) Using cached sniffio-1.3.0-py3-none-any.whl (10 kB) Using cached SQLAlchemy-1.4.50-cp37-cp37m-manylinux_2_5_x86_64.manylinux1_x86_64.manylinux_2_17_x86_64.manylinux2014_x86_64.whl (1.6 MB) Using cached sqlparse-0.4.4-py3-none-any.whl (41 kB) Using cached starlette_context-0.3.5-py37-none-any.whl (12 kB) Using cached starlette_graphene3-0.6.0-py3-none-any.whl (9.0 kB) Using cached starlette-0.27.0-py3-none-any.whl (66 kB) Using cached supervisor-4.2.5-py2.py3-none-any.whl (319 kB) Using cached svgwrite-1.4.3-py3-none-any.whl (67 kB) Using cached tenacity-8.2.3-py3-none-any.whl (24 kB) Using cached tinydb-4.8.0-py3-none-any.whl (24 kB) Using cached tomli-2.0.1-py3-none-any.whl (12 kB) Using cached tornado-6.2-cp37-abi3-manylinux_2_5_x86_64.manylinux1_x86_64.manylinux_2_17_x86_64.manylinux2014_x86_64.whl (423 kB) Using cached tqdm-4.66.1-py3-none-any.whl (78 kB) Using cached tuspy-1.0.1-py3-none-any.whl (14 kB) Using cached tuswsgi-0.5.5-py2.py3-none-any.whl (6.9 kB) Using cached typing_extensions-4.7.1-py3-none-any.whl (33 kB) Using cached tzlocal-5.1-py3-none-any.whl (21 kB) Using cached ubiquerg-0.6.3-py2.py3-none-any.whl (13 kB) Using cached urllib3-1.26.18-py2.py3-none-any.whl (143 kB) Using cached uvicorn-0.22.0-py3-none-any.whl (58 kB) Using cached uvloop-0.18.0-cp37-cp37m-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (4.3 MB) Using cached vine-5.1.0-py3-none-any.whl (9.6 kB) Using cached wcwidth-0.2.12-py2.py3-none-any.whl (34 kB) Using cached wrapt-1.16.0-cp37-cp37m-manylinux_2_5_x86_64.manylinux1_x86_64.manylinux_2_17_x86_64.manylinux2014_x86_64.whl (77 kB) Using cached yacman-0.9.2-py3-none-any.whl (18 kB) Using cached yarl-1.9.3-cp37-cp37m-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (288 kB) Using cached zipp-3.15.0-py3-none-any.whl (6.8 kB) Using cached zstandard-0.21.0-cp37-cp37m-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (2.7 MB) Installing collected packages: zipstream-new, whoosh, webencodings, wcwidth, ubiquerg, sqlitedict, sortedcontainers, shellescape, repoze-lru, pytz, pyeventsystem, parsley, msgpack, mistune, mercurial, edam-ontology, docopt, dictobj, cached-property, boto, boltons, billiard, beaker, bagit, arcp, appdirs, aniso8601, zstandard, zipp, wrapt, webob, vine, uvloop, urllib3, typing-extensions, tqdm, tornado, tomli, tinydb, tenacity, svgwrite, supervisor, sqlparse, sniffio, six, setuptools-scm, ruamel-yaml-clib, regex, pyzmq, pyyaml, python-multipart, python-magic, pysam, pyrsistent, pyparsing, pygments, pycryptodome, pycparser, pyasn1, psutil, prompt-toolkit, pkgutil-resolve-name, pebble, packaging, orjson, oauthlib, numpy, nodeenv, mypy-extensions, multidict, mdurl, markupsafe, lxml, lagom, jsonref, jmespath, isal, idna, humanfriendly, greenlet, future, fsspec, frozenlist, filelock, exceptiongroup, docutils, dnspython, defusedxml, decorator, cheetah3, charset-normalizer, certifi, bcrypt, backports-zoneinfo, babel, attmap, asynctest, aiofiles, a2wsgi, yarl, tzlocal, tuswsgi, tifffile, ruamel-yaml, rsa, routes, requests, python3-openid, python-dateutil, pyjwt, pydot, pydantic, promise, paste, oyaml, networkx, mrcfile, markdown-it-py, jinja2, isodate, importlib-resources, importlib-metadata, h5py, h11, graphql-core, galaxy-sequence-utils, fs, email-validator, ecdsa, dparse, deprecation, coloredlogs, circus, cffi, bx-python, bleach, async-timeout, apispec, anyio, amqp, aiosignal, aioitertools, aiodataloader, starlette, sqlalchemy, rich, requests-unixsocket, requests-toolbelt, requests-oauthlib, rdflib, python-jose, pynacl, pylibmagic, pykwalify, pyfaidx, pydantic-tes, pastedeploy, markdown, mako, kombu, isa-rwval, h5grove, gunicorn, graphql-relay, cryptography, conda-package-streaming, cloudbridge, click, cachecontrol, botocore, bagit-profile, attrs, argcomplete, uvicorn, starlette-context, social-auth-core, prov, paramiko, jsonschema, gravity, graphene, fastapi, click-repl, click-plugins, click-didyoumean, bdbag, alembic, aiohttp, adal, yacman, tuspy, starlette-graphene3, schema-salad, pulsar-galaxy-lib, msal, graphene-sqlalchemy, fastapi-utils, cloudauthz, celery, aiobotocore, s3fs, refgenconf, cwl-upgrader, bioblend, gxformat2, cwl-utils, galaxy2cwl, cwltool, rocrate Successfully installed a2wsgi-1.7.0 adal-1.2.7 aiobotocore-2.4.2 aiodataloader-0.4.0 aiofiles-23.2.1 aiohttp-3.8.6 aioitertools-0.11.0 aiosignal-1.3.1 alembic-1.12.1 amqp-5.2.0 aniso8601-9.0.1 anyio-3.7.1 apispec-6.3.0 appdirs-1.4.4 arcp-0.2.1 argcomplete-3.1.2 async-timeout-4.0.3 asynctest-0.13.0 attmap-0.13.2 attrs-23.1.0 babel-2.13.1 backports-zoneinfo-0.2.1 bagit-1.8.1 bagit-profile-1.3.1 bcrypt-4.0.1 bdbag-1.7.1 beaker-1.12.1 billiard-3.6.4.0 bioblend-1.2.0 bleach-6.0.0 boltons-23.1.1 boto-2.49.0 botocore-1.27.59 bx-python-0.10.0 cachecontrol-0.13.1 cached-property-1.5.2 celery-5.2.7 certifi-2023.11.17 cffi-1.15.1 charset-normalizer-3.3.2 cheetah3-3.2.6.post1 circus-0.18.0 click-8.1.7 click-didyoumean-0.3.0 click-plugins-1.1.1 click-repl-0.3.0 cloudauthz-0.6.0 cloudbridge-3.2.0 coloredlogs-15.0.1 conda-package-streaming-0.9.0 cryptography-41.0.5 cwl-upgrader-1.2.8 cwl-utils-0.28 cwltool-3.1.20221109155812 decorator-5.1.1 defusedxml-0.7.1 deprecation-2.1.0 dictobj-0.4 dnspython-2.3.0 docopt-0.6.2 docutils-0.18.1 dparse-0.6.3 ecdsa-0.18.0 edam-ontology-1.25.2 email-validator-2.0.0.post2 exceptiongroup-1.2.0 fastapi-0.98.0 fastapi-utils-0.2.1 filelock-3.12.2 frozenlist-1.3.3 fs-2.4.16 fsspec-2023.1.0 future-0.18.3 galaxy-sequence-utils-1.1.5 galaxy2cwl-0.1.4 graphene-3.3 graphene-sqlalchemy-3.0.0b3 graphql-core-3.2.3 graphql-relay-3.2.0 gravity-1.0.4 greenlet-2.0.2 gunicorn-21.2.0 gxformat2-0.18.0 h11-0.14.0 h5grove-1.3.0 h5py-3.8.0 humanfriendly-10.0 idna-3.5 importlib-metadata-4.13.0 importlib-resources-5.12.0 isa-rwval-0.10.10 isal-1.3.0 isodate-0.6.1 jinja2-3.1.2 jmespath-1.0.1 jsonref-1.1.0 jsonschema-4.17.3 kombu-5.2.4 lagom-2.6.0 lxml-4.9.3 mako-1.2.4 markdown-3.4.4 markdown-it-py-2.2.0 markupsafe-2.1.3 mdurl-0.1.2 mercurial-6.6 mistune-2.0.5 mrcfile-1.4.3 msal-1.25.0 msgpack-1.0.5 multidict-6.0.4 mypy-extensions-1.0.0 networkx-2.5 nodeenv-1.8.0 numpy-1.21.6 oauthlib-3.2.2 orjson-3.9.7 oyaml-1.0 packaging-23.2 paramiko-3.3.1 parsley-1.3 paste-3.7.1 pastedeploy-3.1.0 pebble-5.0.4 pkgutil-resolve-name-1.3.10 promise-2.3 prompt-toolkit-3.0.41 prov-1.5.1 psutil-5.9.6 pulsar-galaxy-lib-0.15.5 pyasn1-0.5.1 pycparser-2.21 pycryptodome-3.19.0 pydantic-1.10.13 pydantic-tes-0.1.5 pydot-1.4.2 pyeventsystem-0.1.0 pyfaidx-0.7.2.2 pygments-2.17.2 pyjwt-2.8.0 pykwalify-1.8.0 pylibmagic-0.5.0 pynacl-1.5.0 pyparsing-3.0.9 pyrsistent-0.19.3 pysam-0.22.0 python-dateutil-2.8.2 python-jose-3.3.0 python-magic-0.4.27 python-multipart-0.0.7 python3-openid-3.2.0 pytz-2023.3.post1 pyyaml-6.0.1 pyzmq-25.1.1 rdflib-6.2.0 refgenconf-0.12.2 regex-2023.10.3 repoze-lru-0.7 requests-2.31.0 requests-oauthlib-1.3.1 requests-toolbelt-1.0.0 requests-unixsocket-0.3.0 rich-13.7.0 rocrate-0.9.0 routes-2.5.1 rsa-4.9 ruamel-yaml-0.17.21 ruamel-yaml-clib-0.2.8 s3fs-2023.1.0 schema-salad-8.4.20230808163024 setuptools-scm-5.0.2 shellescape-3.8.1 six-1.16.0 sniffio-1.3.0 social-auth-core-4.0.3 sortedcontainers-2.4.0 sqlalchemy-1.4.50 sqlitedict-2.1.0 sqlparse-0.4.4 starlette-0.27.0 starlette-context-0.3.5 starlette-graphene3-0.6.0 supervisor-4.2.5 svgwrite-1.4.3 tenacity-8.2.3 tifffile-2021.11.2 tinydb-4.8.0 tomli-2.0.1 tornado-6.2 tqdm-4.66.1 tuspy-1.0.1 tuswsgi-0.5.5 typing-extensions-4.7.1 tzlocal-5.1 ubiquerg-0.6.3 urllib3-1.26.18 uvicorn-0.22.0 uvloop-0.18.0 vine-5.1.0 wcwidth-0.2.12 webencodings-0.5.1 webob-1.8.7 whoosh-2.7.4 wrapt-1.16.0 yacman-0.9.2 yarl-1.9.3 zipp-3.15.0 zipstream-new-1.1.8 zstandard-0.21.0 [notice] A new release of pip is available: 23.3.2 -> 24.0 [notice] To update, run: pip install --upgrade pip [notice] A new release of pip is available: 23.3.2 -> 24.0 [notice] To update, run: pip install --upgrade pip Looking in indexes: https://wheels.galaxyproject.org/simple, https://pypi.python.org/simple Collecting watchdog (from -r /dev/stdin (line 1)) Using cached watchdog-3.0.0-py3-none-manylinux2014_x86_64.whl.metadata (36 kB) Using cached watchdog-3.0.0-py3-none-manylinux2014_x86_64.whl (82 kB) Installing collected packages: watchdog Successfully installed watchdog-3.0.0 [notice] A new release of pip is available: 23.3.2 -> 24.0 [notice] To update, run: pip install --upgrade pip Installing node into /scratch/rico/.planemo/gx_venv_3 with nodeenv. * Install prebuilt node (18.12.1) ..... done. * Appending data to /scratch/rico/.planemo/gx_venv_3/bin/activate * Appending data to /scratch/rico/.planemo/gx_venv_3/bin/activate.fish The Galaxy client build is being skipped due to the SKIP_CLIENT_BUILD environment variable. Activating virtualenv at /scratch/rico/.planemo/gx_venv_3 Executing: galaxyctl start Adding service gunicorn supervisord is not running Adding service celery supervisord is not running Adding service celery-beat supervisord is not running celery STARTING celery-beat STARTING gunicorn STARTING Log files are in /tmp/tmpu7x63f_i/gravity/log run command exited with return code 0 urllib3.connectionpool DEBUG 2024-02-23 13:24:38,213: Starting new HTTP connection (1): 127.0.0.1:39427 [00] Galaxy not up yet... HTTPConnectionPool(host='127.0.0.1', port=39427): Max retries exceeded with url: /api/version (Cause urllib3.connectionpool DEBUG 2024-02-23 13:24:39,218: Starting new HTTP connection (1): 127.0.0.1:39427 [01] Galaxy not up yet... HTTPConnectionPool(host='127.0.0.1', port=39427): Max retries exceeded with url: /api/version (Cause urllib3.connectionpool DEBUG 2024-02-23 13:24:40,221: Starting new HTTP connection (1): 127.0.0.1:39427 [02] Galaxy not up yet... HTTPConnectionPool(host='127.0.0.1', port=39427): Max retries exceeded with url: /api/version (Cause urllib3.connectionpool DEBUG 2024-02-23 13:24:41,226: Starting new HTTP connection (1): 127.0.0.1:39427 [03] Galaxy not up yet... HTTPConnectionPool(host='127.0.0.1', port=39427): Max retries exceeded with url: /api/version (Cause urllib3.connectionpool DEBUG 2024-02-23 13:24:42,231: Starting new HTTP connection (1): 127.0.0.1:39427 [04] Galaxy not up yet... HTTPConnectionPool(host='127.0.0.1', port=39427): Max retries exceeded with url: /api/version (Cause urllib3.connectionpool DEBUG 2024-02-23 13:24:43,236: Starting new HTTP connection (1): 127.0.0.1:39427 [05] Galaxy not up yet... HTTPConnectionPool(host='127.0.0.1', port=39427): Max retries exceeded with url: /api/version (Cause galaxy.jobs DEBUG 2024-02-23 13:24:43,065 [pN:main,p:76107,tN:MainThread] Loading job configuration from /scratch/rico/galaxytools/tools/ncbi_fcs_adaptor/planemo_job_conf.xml galaxy.jobs DEBUG 2024-02-23 13:24:43,065 [pN:main,p:76107,tN:MainThread] Read job configuration from file: /scratch/rico/galaxytools/tools/ncbi_fcs_adaptor/planemo_job_conf.xml galaxy.web_stack.handlers INFO 2024-02-23 13:24:43,073 [pN:main,p:76107,tN:MainThread] JobConfiguration: No job handler assignment method is set, defaulting to 'HANDLER_ASSIGNMENT_METHODS.DB_SKIP_LOCKED', set the `assign_with` attribute on <handlers> to override the default galaxy.jobs INFO 2024-02-23 13:24:43,073 [pN:main,p:76107,tN:MainThread] Job handler assignment methods set to: db-skip-locked galaxy.web_stack.handlers DEBUG 2024-02-23 13:24:43,074 [pN:main,p:76107,tN:MainThread] default set to child with id or tag 'docker_local' galaxy.jobs DEBUG 2024-02-23 13:24:43,074 [pN:main,p:76107,tN:MainThread] Done loading job configuration galaxy.security.vault WARNING 2024-02-23 13:24:43,193 [pN:main,p:76107,tN:MainThread] No vault configured. We recommend defining the vault_config_file setting in galaxy.yml galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,221 [pN:main,p:76107,tN:MainThread] Loading datatypes from /scratch/rico/galaxy/lib/galaxy/config/sample/datatypes_conf.xml.sample galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,221 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension source.h. galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,221 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension source.c. galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,221 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension source.cpp. galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,221 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension source.py. galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,221 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension source.go. galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,222 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension source.rs. galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,222 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension source.cs. galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,222 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:Binary from the datatype registry for extension hep.root. galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,222 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:JP2 from the datatype registry for extension jp2. galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,222 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:Ab1 from the datatype registry for extension ab1. galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,222 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.assembly:Amos from the datatype registry for extension afg. galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,223 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.goldenpath:GoldenPath from the datatype registry for extension agp. galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,223 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.anvio:AnvioComposite from the datatype registry for extension anvio_cog_profile. galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,223 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.anvio:AnvioComposite from the datatype registry for extension anvio_composite. galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,223 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:Data from the datatype registry for extension anvio_classifier. galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,223 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.anvio:AnvioContigsDB from the datatype registry for extension anvio_contigs_db. galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,223 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.anvio:AnvioDB from the datatype registry for extension anvio_db. galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,224 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.anvio:AnvioGenomesDB from the datatype registry for extension anvio_genomes_db. galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,224 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.anvio:AnvioPanDB from the datatype registry for extension anvio_pan_db. galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,224 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.anvio:AnvioComposite from the datatype registry for extension anvio_pfam_profile. galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,224 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.anvio:AnvioProfileDB from the datatype registry for extension anvio_profile_db. galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,224 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.anvio:AnvioSamplesDB from the datatype registry for extension anvio_samples_db. galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,224 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.text:Json from the datatype registry for extension anvio_state. galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,224 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.anvio:AnvioStructureDB from the datatype registry for extension anvio_structure_db. galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,224 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.tabular:TSV from the datatype registry for extension anvio_variability. galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,224 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.text:Arff from the datatype registry for extension arff. galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,224 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.text:Paf from the datatype registry for extension paf. galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,224 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.text:Gfa1 from the datatype registry for extension gfa1. galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,224 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.text:Gfa2 from the datatype registry for extension gfa2. galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,224 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:GenericAsn1 from the datatype registry for extension asn1. galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,225 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:GenericAsn1Binary from the datatype registry for extension asn1-binary. galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,225 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.sequence:Axt from the datatype registry for extension axt. galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,225 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.tabular:FeatureLocationIndex from the datatype registry for extension fli. galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,225 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:Bam from the datatype registry for extension bam. galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,225 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:Binary from the datatype registry for extension bai. galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,225 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:BamInputSorted from the datatype registry for extension qname_input_sorted.bam. galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,225 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:BamQuerynameSorted from the datatype registry for extension qname_sorted.bam. galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,225 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:BamNative from the datatype registry for extension unsorted.bam. galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,225 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:ProBam from the datatype registry for extension probam. galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,225 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:CRAM from the datatype registry for extension cram. galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,225 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.interval:Bed from the datatype registry for extension bed. galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,225 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.interval:BedGraph from the datatype registry for extension bedgraph. galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,225 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.interval:BedStrict from the datatype registry for extension bedstrict. galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,225 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.interval:Bed6 from the datatype registry for extension bed6. galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,225 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.interval:Bed12 from the datatype registry for extension bed12. galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,226 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.interval:ProBed from the datatype registry for extension probed. galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,226 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.chrominfo:ChromInfo from the datatype registry for extension len. galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,226 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:DAA from the datatype registry for extension daa. galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,226 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:RMA6 from the datatype registry for extension rma6. galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,226 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:DMND from the datatype registry for extension dmnd. galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,226 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:Parquet from the datatype registry for extension parquet. galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,226 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:Idat from the datatype registry for extension idat. galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,226 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:BigBed from the datatype registry for extension bigbed. galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,226 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:BigWig from the datatype registry for extension bigwig. galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,226 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:Binary from the datatype registry for extension cxb. galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,226 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.interval:ChromatinInteractions from the datatype registry for extension chrint. galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,227 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.tabular:CSV from the datatype registry for extension csv. galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,227 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.tabular:TSV from the datatype registry for extension tsv. galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,227 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.tabular:TSV from the datatype registry for extension intermine_tabular. galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,227 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.interval:CustomTrack from the datatype registry for extension customtrack. galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,227 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.ngsindex:BowtieColorIndex from the datatype registry for extension bowtie_color_index. galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,227 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.ngsindex:BowtieBaseIndex from the datatype registry for extension bowtie_base_index. galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,227 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.sequence:csFasta from the datatype registry for extension csfasta. galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,227 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:Data from the datatype registry for extension data. galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,227 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:Binary from the datatype registry for extension gz. galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,227 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:Binary from the datatype registry for extension binary. galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,227 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.text:Json from the datatype registry for extension d3_hierarchy. galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,228 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.text:ImgtJson from the datatype registry for extension imgt.json. galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,228 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.text:GeoJson from the datatype registry for extension geojson. galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,228 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.text:Json from the datatype registry for extension data_manager_json. galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,228 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.sequence:DotBracket from the datatype registry for extension dbn. galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,228 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.tabular:Tabular from the datatype registry for extension fai. galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,228 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.sequence:Fasta from the datatype registry for extension fasta. galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,228 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.sequence:Fastg from the datatype registry for extension fastg. galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,228 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.sequence:Fastq from the datatype registry for extension fastq. galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,228 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.sequence:FastqSanger from the datatype registry for extension fastqsanger. galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,228 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.sequence:FastqSolexa from the datatype registry for extension fastqsolexa. galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,229 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.sequence:FastqCSSanger from the datatype registry for extension fastqcssanger. galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,229 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.sequence:FastqIllumina from the datatype registry for extension fastqillumina. galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,229 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.sequence:SequenceSplitLocations from the datatype registry for extension fqtoc. galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,229 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.tabular:Eland from the datatype registry for extension eland. galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,229 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.tabular:ElandMulti from the datatype registry for extension elandmulti. galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,229 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.tracks:GeneTrack from the datatype registry for extension genetrack. galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,229 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.interval:Gff from the datatype registry for extension gff. galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,229 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.interval:Gff3 from the datatype registry for extension gff3. galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,229 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.images:Gif from the datatype registry for extension gif. galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,230 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.images:Gmaj from the datatype registry for extension gmaj.zip. galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,230 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension graph_dot. galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,230 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.interval:Gtf from the datatype registry for extension gtf. galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,230 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:Binary from the datatype registry for extension toolshed.gz. galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,230 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:Binary from the datatype registry for extension hdf4. galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,230 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:H5 from the datatype registry for extension h5. galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,230 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:H5 from the datatype registry for extension scool. galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,230 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:Grib from the datatype registry for extension grib. galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,230 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:Loom from the datatype registry for extension loom. galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,230 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:Anndata from the datatype registry for extension h5ad. galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,230 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:Visium from the datatype registry for extension visium.tar.gz. galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,230 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:H5 from the datatype registry for extension mz5. galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,230 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.text:Json from the datatype registry for extension hyphy_results.json. galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,230 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.text:Json from the datatype registry for extension hivtrace. galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,231 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:Cool from the datatype registry for extension cool. galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,231 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:MCool from the datatype registry for extension mcool. galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,231 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:H5MLM from the datatype registry for extension h5mlm. galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,231 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:LudwigModel from the datatype registry for extension ludwig_model. galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,231 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.text:Html from the datatype registry for extension html. galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,231 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.text:Html from the datatype registry for extension ludwig_report.html. galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,231 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.interval:Interval from the datatype registry for extension interval. galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,231 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:Binary from the datatype registry for extension jellyfish. galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,231 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:Binary from the datatype registry for extension ktab. galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,231 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:Binary from the datatype registry for extension hist. galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,231 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:Binary from the datatype registry for extension prof. galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,282 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.isa:IsaTab from the datatype registry for extension isa-tab. galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,282 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.isa:IsaJson from the datatype registry for extension isa-json. galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,282 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.tabular:Tabular from the datatype registry for extension picard_interval_list. galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,282 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension gatk_interval. galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,283 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension gatk_report. galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,283 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.tabular:Tabular from the datatype registry for extension gatk_dbsnp. galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,283 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.tabular:Tabular from the datatype registry for extension gatk_tranche. galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,283 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.tabular:Tabular from the datatype registry for extension gatk_recal. galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,283 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.tabular:Tabular from the datatype registry for extension cnn. galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,283 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.tabular:Tabular from the datatype registry for extension cns. galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,283 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.tabular:Tabular from the datatype registry for extension cnr. galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,283 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension hhr. galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,283 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.images:Jpg from the datatype registry for extension jpg. galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,283 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.images:Tiff from the datatype registry for extension tiff. galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,283 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.images:Tiff from the datatype registry for extension tf2. galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,284 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.images:Tiff from the datatype registry for extension tf8. galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,284 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.images:Tiff from the datatype registry for extension btf. galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,284 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.images:Tiff from the datatype registry for extension tif. galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,284 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.images:Tiff from the datatype registry for extension svs. galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,284 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.images:Tiff from the datatype registry for extension scn. galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,284 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.images:Tiff from the datatype registry for extension bif. galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,284 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.images:OMETiff from the datatype registry for extension ome.tiff. galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,284 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.images:Hamamatsu from the datatype registry for extension vms. galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,284 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.images:Hamamatsu from the datatype registry for extension vmu. galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,284 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.images:Hamamatsu from the datatype registry for extension ndpi. galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,284 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.images:Mirax from the datatype registry for extension mrxs. galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,284 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.images:Sakura from the datatype registry for extension svslide. galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,284 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.images:Bmp from the datatype registry for extension bmp. galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,284 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.images:Im from the datatype registry for extension im. galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,284 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.images:Pcd from the datatype registry for extension pcd. galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,285 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.images:Pcx from the datatype registry for extension pcx. galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,285 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.images:Ppm from the datatype registry for extension ppm. galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,285 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.images:Psd from the datatype registry for extension psd. galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,285 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.images:Xbm from the datatype registry for extension xbm. galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,285 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.images:Xpm from the datatype registry for extension xpm. galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,285 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.images:Rgb from the datatype registry for extension rgb. galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,285 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.images:Pbm from the datatype registry for extension pbm. galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,285 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.images:Pgm from the datatype registry for extension pgm. galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,285 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.images:Nrrd from the datatype registry for extension nrrd. galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,285 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.images:Nrrd from the datatype registry for extension nhdr. galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,285 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.sequence:RNADotPlotMatrix from the datatype registry for extension rna_eps. galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,286 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.qiime2:QIIME2Artifact from the datatype registry for extension qza. galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,286 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.qiime2:QIIME2Visualization from the datatype registry for extension qzv. galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,286 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.qiime2:QIIME2Metadata from the datatype registry for extension qiime2.tabular. galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,286 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:CompressedZipArchive from the datatype registry for extension zip. galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,286 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:CompressedZipArchive from the datatype registry for extension ncbi_genome_dataset.zip. galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,286 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:CompressedArchive from the datatype registry for extension tar. galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,286 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:Directory from the datatype registry for extension directory. galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,286 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.text:Yaml from the datatype registry for extension yaml. galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,286 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.tabular:Tabular from the datatype registry for extension mrm. galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,288 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.proteomics:Dta from the datatype registry for extension dta. galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,288 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.proteomics:Dta2d from the datatype registry for extension dta2d. galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,288 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.proteomics:Edta from the datatype registry for extension edta. galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,288 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.proteomics:PepXml from the datatype registry for extension pepxml. galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,288 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.proteomics:PepXml from the datatype registry for extension raw_pepxml. galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,288 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.proteomics:PepXml from the datatype registry for extension peptideprophet_pepxml. galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,288 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.proteomics:PepXml from the datatype registry for extension interprophet_pepxml. galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,288 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.proteomics:ProtXML from the datatype registry for extension protxml. galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,288 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.proteomics:ParamXml from the datatype registry for extension paramxml. galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,288 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.proteomics:Kroenik from the datatype registry for extension kroenik. galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,288 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.proteomics:PepList from the datatype registry for extension peplist. galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,288 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.proteomics:PSMS from the datatype registry for extension psms. galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,288 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.proteomics:PepXmlReport from the datatype registry for extension pepxml.tsv. galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,289 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.proteomics:ProtXmlReport from the datatype registry for extension protxml.tsv. galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,289 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.proteomics:MascotDat from the datatype registry for extension mascotdat. galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,289 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.proteomics:MzIdentML from the datatype registry for extension mzid. galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,289 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.proteomics:IdXML from the datatype registry for extension idxml. galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,289 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.proteomics:TandemXML from the datatype registry for extension tandem. galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,289 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension sirius.ms. galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,289 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.proteomics:ThermoRAW from the datatype registry for extension thermo.raw. galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,289 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:BafTar from the datatype registry for extension brukerbaf.d.tar. galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,289 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:YepTar from the datatype registry for extension agilentbrukeryep.d.tar. galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,289 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:TdfTar from the datatype registry for extension brukertdf.d.tar. galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,289 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:MassHunterTar from the datatype registry for extension agilentmasshunter.d.tar. galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,289 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:MassLynxTar from the datatype registry for extension watersmasslynx.raw.tar. galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,289 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:WiffTar from the datatype registry for extension wiff.tar. galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,289 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:Wiff2Tar from the datatype registry for extension wiff2.tar. galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,289 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.proteomics:MascotXML from the datatype registry for extension mascotxml. galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,289 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.proteomics:MzTab from the datatype registry for extension mztab. galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,289 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.proteomics:MzTab2 from the datatype registry for extension mztab2. galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,290 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.proteomics:MzML from the datatype registry for extension mzml. galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,290 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.proteomics:NmrML from the datatype registry for extension nmrml. galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,290 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:Meryldb from the datatype registry for extension meryldb. galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,290 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:Bref3 from the datatype registry for extension bref3. galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,290 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.proteomics:Mgf from the datatype registry for extension mgf. galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,290 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.proteomics:Wiff from the datatype registry for extension wiff. galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,290 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.proteomics:Wiff2 from the datatype registry for extension wiff2. galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,290 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.proteomics:MzXML from the datatype registry for extension mzxml. galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,290 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.proteomics:MzData from the datatype registry for extension mzdata. galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,290 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.proteomics:Ms2 from the datatype registry for extension ms2. galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,290 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.proteomics:MzQuantML from the datatype registry for extension mzq. galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,290 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:SQlite from the datatype registry for extension sqlite. galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,290 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:MzSQlite from the datatype registry for extension mz.sqlite. galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,290 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:OSW from the datatype registry for extension osw. galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,290 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:PQP from the datatype registry for extension pqp. galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,291 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.proteomics:TraML from the datatype registry for extension traml. galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,291 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.proteomics:TrafoXML from the datatype registry for extension trafoxml. galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,291 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.proteomics:FeatureXML from the datatype registry for extension featurexml. galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,291 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.proteomics:ConsensusXML from the datatype registry for extension consensusxml. galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,291 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.proteomics:UniProtXML from the datatype registry for extension uniprotxml. galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,291 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.proteomics:XquestXML from the datatype registry for extension xquest.xml. galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,291 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.proteomics:XquestSpecXML from the datatype registry for extension spec.xml. galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,291 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.proteomics:QCML from the datatype registry for extension qcml. galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,291 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.text:Json from the datatype registry for extension mzqc. galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,291 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.proteomics:Msp from the datatype registry for extension msp. galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,291 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.proteomics:SPLibNoIndex from the datatype registry for extension splib_noindex. galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,291 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.proteomics:SPLib from the datatype registry for extension splib. galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,291 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:BlibSQlite from the datatype registry for extension blib. galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,291 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:DlibSQlite from the datatype registry for extension dlib. galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,291 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:ElibSQlite from the datatype registry for extension elib. galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,291 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.proteomics:XHunterAslFormat from the datatype registry for extension hlf. galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,292 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:IdpDB from the datatype registry for extension idpdb. galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,292 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.proteomics:Sf3 from the datatype registry for extension sf3. galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,292 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:Binary from the datatype registry for extension cps. galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,292 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.tabular:ConnectivityTable from the datatype registry for extension ct. galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,292 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:PostgresqlArchive from the datatype registry for extension postgresql. galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,292 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:MongoDBArchive from the datatype registry for extension mongodb. galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,292 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:GeneNoteBook from the datatype registry for extension genenotebook. galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,292 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:SearchGuiArchive from the datatype registry for extension searchgui_archive. galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,292 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:Fast5Archive from the datatype registry for extension fast5.tar. galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,292 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:Fast5ArchiveGz from the datatype registry for extension fast5.tar.gz. galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,292 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:Fast5ArchiveBz2 from the datatype registry for extension fast5.tar.bz2. galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,292 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:CompressedArchive from the datatype registry for extension peptideshaker_archive. galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,292 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.tabular:Tabular from the datatype registry for extension percin. galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,292 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.xml:GenericXml from the datatype registry for extension percout. galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,292 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.tabular:Tabular from the datatype registry for extension hardklor. galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,293 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.tabular:Tabular from the datatype registry for extension kronik. galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,293 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.proteomics:ImzML from the datatype registry for extension imzml. galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,293 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.images:Analyze75 from the datatype registry for extension analyze75. galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,293 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.images:Nifti1 from the datatype registry for extension nii1. galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,293 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.images:Nifti2 from the datatype registry for extension nii2. galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,293 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.images:Gifti from the datatype registry for extension gii. galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,293 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.images:Tck from the datatype registry for extension tck. galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,293 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.images:Trk from the datatype registry for extension trk. galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,293 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.images:Mrc2014 from the datatype registry for extension mrc. galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,293 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.images:Star from the datatype registry for extension star. galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,293 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.proteomics:PEFF from the datatype registry for extension peff. galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,293 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension toml. galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,294 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.flow:FCS from the datatype registry for extension fcs. galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,294 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.tabular:Tabular from the datatype registry for extension flowtext. galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,294 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.tabular:Tabular from the datatype registry for extension flowclr. galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,294 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.tabular:Tabular from the datatype registry for extension flowmfi. galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,294 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.tabular:Tabular from the datatype registry for extension flowstat1. galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,294 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.tabular:Tabular from the datatype registry for extension flowstat2. galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,294 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.tabular:Tabular from the datatype registry for extension flowstat3. galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,294 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.tabular:Tabular from the datatype registry for extension flowscore. galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,294 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:RData from the datatype registry for extension flowframe. galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,294 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:RData from the datatype registry for extension fsom. galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,295 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:RData from the datatype registry for extension flowset. galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,295 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.tabular:Tabular from the datatype registry for extension metacyto_clr.txt. galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,295 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.metacyto:mSummary from the datatype registry for extension metacyto_summary.txt. galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,295 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.metacyto:mStats from the datatype registry for extension metacyto_stats.txt. galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,295 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:CompressedArchive from the datatype registry for extension deeptools_compute_matrix_archive. galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,295 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:CompressedArchive from the datatype registry for extension deeptools_coverage_matrix. galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,295 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:NetCDF from the datatype registry for extension netcdf. galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,295 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.images:Eps from the datatype registry for extension eps. galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,295 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.images:Rast from the datatype registry for extension rast. galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,295 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.images:Laj from the datatype registry for extension laj. galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,295 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.sequence:Lav from the datatype registry for extension lav. galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,296 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.sequence:Maf from the datatype registry for extension maf. galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,296 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.sequence:MafCustomTrack from the datatype registry for extension mafcustomtrack. galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,296 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.tabular:MatrixMarket from the datatype registry for extension mtx. galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,296 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.tabular:CMAP from the datatype registry for extension cmap. galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,296 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.interval:ENCODEPeak from the datatype registry for extension encodepeak. galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,296 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.images:Pdf from the datatype registry for extension pdf. galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,296 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.tabular:Pileup from the datatype registry for extension pileup. galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,296 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.tabular:Psl from the datatype registry for extension psl. galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,296 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.text:Obo from the datatype registry for extension obo. galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,296 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.xml:Owl from the datatype registry for extension owl. galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,296 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.images:Png from the datatype registry for extension png. galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,296 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.qualityscore:QualityScore from the datatype registry for extension qual. galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,296 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.qualityscore:QualityScoreSolexa from the datatype registry for extension qualsolexa. galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,296 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.qualityscore:QualityScoreIllumina from the datatype registry for extension qualillumina. galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,296 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.qualityscore:QualityScoreSOLiD from the datatype registry for extension qualsolid. galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,296 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.qualityscore:QualityScore454 from the datatype registry for extension qual454. galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,297 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.assembly:Roadmaps from the datatype registry for extension roadmaps. galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,297 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.tabular:Sam from the datatype registry for extension sam. galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,297 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:Scf from the datatype registry for extension scf. galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,297 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.assembly:Sequences from the datatype registry for extension sequences. galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,297 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.text:SnpEffDb from the datatype registry for extension snpeffdb. galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,297 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.text:SnpSiftDbNSFP from the datatype registry for extension snpsiftdbnsfp. galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,297 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.tabular:Tabular from the datatype registry for extension dbnsfp.tabular. galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,297 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:Sff from the datatype registry for extension sff. galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,297 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:Sra from the datatype registry for extension sra. galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,297 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.tabular:SraManifest from the datatype registry for extension sra_manifest.tabular. galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,297 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.xml:GenericXml from the datatype registry for extension svg. galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,297 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.tabular:Taxonomy from the datatype registry for extension taxonomy. galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,297 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.tabular:Tabular from the datatype registry for extension tabular. galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,298 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:TwoBit from the datatype registry for extension twobit. galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,298 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:SQmass from the datatype registry for extension sqmass. galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,298 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:GeminiSQLite from the datatype registry for extension gemini.sqlite. galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,298 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:ChiraSQLite from the datatype registry for extension chira.sqlite. galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,298 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:CuffDiffSQlite from the datatype registry for extension cuffdiff.sqlite. galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,298 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:GAFASQLite from the datatype registry for extension gafa.sqlite. galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,298 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:NcbiTaxonomySQlite from the datatype registry for extension ncbitaxonomy.sqlite. galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,298 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension txt. galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,298 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:LineCount from the datatype registry for extension linecount. galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,298 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.sequence:MemePsp from the datatype registry for extension memepsp. galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,298 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.xml:MEMEXml from the datatype registry for extension memexml. galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,298 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.xml:CisML from the datatype registry for extension cisml. galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,298 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.xml:GenericXml from the datatype registry for extension xml. galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,298 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.xml:GenericXml from the datatype registry for extension xsd. galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,298 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.xml:Dzi from the datatype registry for extension dzi. galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,298 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.tabular:Vcf from the datatype registry for extension vcf. galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,299 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:Bcf from the datatype registry for extension bcf. galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,299 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:Bcf from the datatype registry for extension bcf_bgzip. galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,299 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:BcfUncompressed from the datatype registry for extension bcf_uncompressed. galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,299 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.assembly:Velvet from the datatype registry for extension velvet. galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,299 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.interval:Wiggle from the datatype registry for extension wig. galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,300 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:Binary from the datatype registry for extension interval_index. galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,300 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:Binary from the datatype registry for extension odgi. galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,300 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:CompressedArchive from the datatype registry for extension vg. galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,300 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:Binary from the datatype registry for extension xg. galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,300 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:Binary from the datatype registry for extension protobuf2. galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,300 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:Binary from the datatype registry for extension protobuf3. galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,300 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:Binary from the datatype registry for extension onnx. galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,300 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:Binary from the datatype registry for extension tabix. galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,300 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.interval:IntervalTabix from the datatype registry for extension interval_tabix.gz. galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,300 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.interval:JuicerMediumTabix from the datatype registry for extension juicer_medium_tabix.gz. galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,300 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.interval:BedTabix from the datatype registry for extension bed_tabix.gz. galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,300 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.interval:GffTabix from the datatype registry for extension gff_tabix.gz. galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,300 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:Binary from the datatype registry for extension bgzip. galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,301 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.tabular:VcfGz from the datatype registry for extension vcf_bgzip. galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,301 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:Binary from the datatype registry for extension bus. galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,301 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:Binary from the datatype registry for extension kallisto.idx. galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,301 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.xml:Phyloxml from the datatype registry for extension phyloxml. galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,301 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:Newick from the datatype registry for extension newick. galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,301 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:Newick from the datatype registry for extension nhx. galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,301 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:Nexus from the datatype registry for extension nex. galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,301 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.text:IQTree from the datatype registry for extension iqtree. galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,302 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.mothur:SquareDistanceMatrix from the datatype registry for extension mldist. galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,304 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.genetics:Affybatch from the datatype registry for extension affybatch. galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,304 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.genetics:Eigenstratgeno from the datatype registry for extension eigenstratgeno. galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,304 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.genetics:Eigenstratpca from the datatype registry for extension eigenstratpca. galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,304 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.genetics:Eset from the datatype registry for extension eset. galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,304 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.genetics:Fped from the datatype registry for extension fped. galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,304 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.genetics:Fphe from the datatype registry for extension fphe. galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,304 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.genetics:GenomeGraphs from the datatype registry for extension gg. galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,304 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.genetics:ldIndep from the datatype registry for extension ldindep. galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,304 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.genetics:MAlist from the datatype registry for extension malist. galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,304 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.genetics:Lped from the datatype registry for extension lped. galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,304 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.genetics:Pbed from the datatype registry for extension pbed. galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,304 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.genetics:Pheno from the datatype registry for extension pheno. galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,305 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.genetics:Pphe from the datatype registry for extension pphe. galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,305 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.genetics:RexpBase from the datatype registry for extension rexpbase. galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,305 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.genetics:Rgenetics from the datatype registry for extension rgenetics. galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,305 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.genetics:Snptest from the datatype registry for extension snptest. galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,305 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.genetics:SNPMatrix from the datatype registry for extension snpmatrix. galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,305 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:ExcelXls from the datatype registry for extension xls. galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,305 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.text:Ipynb from the datatype registry for extension ipynb. galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,305 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.text:Json from the datatype registry for extension json. galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,305 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.text:ExpressionJson from the datatype registry for extension expression.json. galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,306 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.graph:Xgmml from the datatype registry for extension xgmml. galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,306 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.graph:Sif from the datatype registry for extension sif. galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,306 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.triples:Triples from the datatype registry for extension triples. galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,306 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.triples:HDT from the datatype registry for extension hdt. galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,306 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.triples:NTriples from the datatype registry for extension nt. galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,306 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.triples:N3 from the datatype registry for extension n3. galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,307 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.triples:Turtle from the datatype registry for extension ttl. galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,307 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.triples:Rdf from the datatype registry for extension rdf. galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,307 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.triples:Jsonld from the datatype registry for extension jsonld. galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,307 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:ExcelXls from the datatype registry for extension excel.xls. galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,307 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:Xlsx from the datatype registry for extension xlsx. galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,307 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:Binary from the datatype registry for extension docx. galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,307 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension btwisted. galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,307 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension cai. galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,307 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension cat_db. galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,307 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension charge. galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,307 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension checktrans. galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,307 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension chips. galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,307 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension codcmp. galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,308 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension coderet. galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,308 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension compseq. galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,308 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension cpgplot. galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,308 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension cpgreport. galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,308 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension cusp. galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,308 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension cut. galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,308 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension dan. galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,308 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension digest. galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,308 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension dreg. galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,308 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension einverted. galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,308 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension epestfind. galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,308 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension equicktandem. galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,308 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension est2genome. galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,308 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension etandem. galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,309 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension freak. galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,309 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension fuzznuc. galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,309 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension fuzzpro. galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,309 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension fuzztran. galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,309 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension garnier. galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,309 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension geecee. galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,309 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension helixturnhelix. galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,309 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension hmoment. galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,309 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension isochore. galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,309 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension match. galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,309 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension nametable. galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,309 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension needle. galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,309 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension newcpgreport. galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,309 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension newcpgseek. galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,310 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension noreturn. galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,310 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension palindrome. galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,310 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension pepcoil. galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,310 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension pepinfo. galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,310 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension pepstats. galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,310 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension polydot. galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,310 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension preg. galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,310 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension prettyseq. galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,310 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension primersearch. galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,310 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension showfeat. galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,310 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension showorf. galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,310 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension sixpack. galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,310 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension strider. galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,310 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension supermatcher. galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,311 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension syco. galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,311 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension textsearch. galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,311 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension vectorstrip. galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,311 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension wobble. galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,311 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension wordcount. galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,311 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension dbmotif. galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,311 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension diffseq. galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,311 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension excel. galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,311 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension feattable. galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,311 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension motif. galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,311 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension regions. galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,311 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension seqtable. galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,311 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension simple. galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,311 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension table. galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,312 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension tagseq. galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,312 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension acedb. galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,312 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension clustal. galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,312 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension codata. galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,312 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension embl. galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,312 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension fitch. galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,312 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension gcg. galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,312 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.sequence:Genbank from the datatype registry for extension genbank. galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,312 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension hennig86. galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,312 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension ig. galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,312 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension jackknifer. galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,312 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension jackknifernon. galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,312 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension mega. galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,313 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension meganon. galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,313 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension ncbi. galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,313 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension nexus. galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,313 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension nexusnon. galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,313 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.phylip:Phylip from the datatype registry for extension phylip. galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,313 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension phylipnon. galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,313 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension pir. galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,313 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension staden. galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,313 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension swiss. galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,314 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.msa:Msf from the datatype registry for extension msf. galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,314 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension markx0. galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,314 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension markx1. galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,314 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension markx10. galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,314 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension markx2. galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,314 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension markx3. galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,314 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension pair. galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,315 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension score. galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,315 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension srs. galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,315 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension srspair. galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,315 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.annotation:SnapHmm from the datatype registry for extension snaphmm. galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,315 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.annotation:Augustus from the datatype registry for extension augustus. galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,315 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:ICM from the datatype registry for extension icm. galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,315 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.msa:InfernalCM from the datatype registry for extension cm. galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,315 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.msa:Hmmer2 from the datatype registry for extension hmm2. galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,315 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.msa:Hmmer3 from the datatype registry for extension hmm3. galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,315 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.msa:Stockholm_1_0 from the datatype registry for extension stockholm. galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,315 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.msa:MauveXmfa from the datatype registry for extension xmfa. galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,316 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.microarrays:Cel from the datatype registry for extension cel. galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,316 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.microarrays:Gpr from the datatype registry for extension gpr. galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,316 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.microarrays:Gal from the datatype registry for extension gal. galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,316 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:RDS from the datatype registry for extension rds. galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,316 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:RDS from the datatype registry for extension phyloseq. galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,316 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:RData from the datatype registry for extension rdata. galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,316 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:RData from the datatype registry for extension rdata.sce. galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,316 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:RData from the datatype registry for extension rdata.xcms.raw. galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,316 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:RData from the datatype registry for extension rdata.msnbase.raw. galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,316 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:RData from the datatype registry for extension rdata.xcms.findchrompeaks. galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,317 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:RData from the datatype registry for extension rdata.xcms.group. galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,317 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:RData from the datatype registry for extension rdata.xcms.retcor. galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,317 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:RData from the datatype registry for extension rdata.xcms.fillpeaks. galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,317 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:RData from the datatype registry for extension rdata.camera.positive. galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,317 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:RData from the datatype registry for extension rdata.camera.negative. galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,317 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:RData from the datatype registry for extension rdata.camera.quick. galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,317 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.hdf5:HDF5SummarizedExperiment from the datatype registry for extension rdata.se. galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,317 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:Binary from the datatype registry for extension rdock_as. galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,317 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:OxliCountGraph from the datatype registry for extension oxlicg. galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,317 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:OxliNodeGraph from the datatype registry for extension oxling. galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,317 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:OxliTagSet from the datatype registry for extension oxlits. galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,318 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:OxliStopTags from the datatype registry for extension oxlist. galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,318 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:OxliSubset from the datatype registry for extension oxliss. galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,318 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:OxliGraphLabels from the datatype registry for extension oxligl. galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,318 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.constructive_solid_geometry:STL from the datatype registry for extension stl. galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,319 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.constructive_solid_geometry:PlyAscii from the datatype registry for extension plyascii. galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,319 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.constructive_solid_geometry:PlyBinary from the datatype registry for extension plybinary. galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,319 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.constructive_solid_geometry:VtkAscii from the datatype registry for extension vtkascii. galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,319 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.constructive_solid_geometry:VtkBinary from the datatype registry for extension vtkbinary. galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,319 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.text:Biom1 from the datatype registry for extension biom1. galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,319 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:Biom2 from the datatype registry for extension biom2. galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,319 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:MashSketch from the datatype registry for extension msh. galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,319 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.interval:ScIdx from the datatype registry for extension scidx. galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,320 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.molecules:SMILES from the datatype registry for extension smi. galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,320 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.molecules:SDF from the datatype registry for extension sdf. galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,320 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.molecules:InChI from the datatype registry for extension inchi. galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,320 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.molecules:MOL from the datatype registry for extension mol. galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,321 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.molecules:MOL2 from the datatype registry for extension mol2. galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,321 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.molecules:CML from the datatype registry for extension cml. galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,321 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.molecules:FPS from the datatype registry for extension fps. galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,321 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.molecules:OBFS from the datatype registry for extension obfs. galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,321 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.molecules:DRF from the datatype registry for extension drf. galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,321 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.molecules:PHAR from the datatype registry for extension phar. galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,321 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.molecules:PDB from the datatype registry for extension pdb. galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,321 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.molecules:PDBQT from the datatype registry for extension pdbqt. galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,321 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.molecules:PQR from the datatype registry for extension pqr. galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,321 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.molecules:Cell from the datatype registry for extension cell. galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,321 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.molecules:CIF from the datatype registry for extension cif. galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,321 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.molecules:XYZ from the datatype registry for extension xyz. galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,321 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.molecules:ExtendedXYZ from the datatype registry for extension extxyz. galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,321 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:Trr from the datatype registry for extension trr. galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,321 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:Dcd from the datatype registry for extension dcd. galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,321 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension top. galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,322 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension prmtop. galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,322 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension itp. galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,322 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension mdp. galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,322 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension ndx. galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,322 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension xvg. galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,322 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:Xtc from the datatype registry for extension xtc. galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,322 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:Cpt from the datatype registry for extension cpt. galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,322 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:Edr from the datatype registry for extension edr. galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,322 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:Binary from the datatype registry for extension tpr. galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,322 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.molecules:GRO from the datatype registry for extension gro. galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,322 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension inpcrd. galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,322 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:Vel from the datatype registry for extension vel. galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,322 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.molecules:grd from the datatype registry for extension grd. galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,322 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.molecules:grdtgz from the datatype registry for extension grd.tgz. galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,323 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.mothur:Otu from the datatype registry for extension mothur.otu. galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,323 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.mothur:Otu from the datatype registry for extension mothur.list. galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,323 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.mothur:Sabund from the datatype registry for extension mothur.sabund. galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,323 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.mothur:Sabund from the datatype registry for extension mothur.rabund. galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,323 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.mothur:GroupAbund from the datatype registry for extension mothur.shared. galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,323 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.mothur:GroupAbund from the datatype registry for extension mothur.relabund. galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,323 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.mothur:Names from the datatype registry for extension mothur.names. galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,323 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.mothur:Group from the datatype registry for extension mothur.design. galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,323 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.mothur:Summary from the datatype registry for extension mothur.summary. galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,323 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.mothur:Group from the datatype registry for extension mothur.groups. galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,323 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.mothur:Oligos from the datatype registry for extension mothur.oligos. galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,323 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.sequence:Fasta from the datatype registry for extension mothur.align. galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,323 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.mothur:AccNos from the datatype registry for extension mothur.accnos. galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,323 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.mothur:AccNos from the datatype registry for extension mothur.otulabels. galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,324 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.tabular:Tabular from the datatype registry for extension mothur.otu.corr. galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,324 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.mothur:SecondaryStructureMap from the datatype registry for extension mothur.map. galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,324 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.mothur:AlignCheck from the datatype registry for extension mothur.align.check. galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,324 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.mothur:AlignReport from the datatype registry for extension mothur.align.report. galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,324 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.mothur:LaneMask from the datatype registry for extension mothur.filter. galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,324 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.mothur:DistanceMatrix from the datatype registry for extension mothur.dist. galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,324 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension mothur.tre. galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,324 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.mothur:PairwiseDistanceMatrix from the datatype registry for extension mothur.pair.dist. galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,324 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.mothur:SquareDistanceMatrix from the datatype registry for extension mothur.square.dist. galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,324 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.mothur:LowerTriangleDistanceMatrix from the datatype registry for extension mothur.lower.dist. galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,324 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.mothur:RefTaxonomy from the datatype registry for extension mothur.ref.taxonomy. galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,324 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.mothur:RefTaxonomy from the datatype registry for extension mothur.seq.taxonomy. galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,324 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.mothur:RefTaxonomy from the datatype registry for extension mothur.rdp.taxonomy. galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,324 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.mothur:ConsensusTaxonomy from the datatype registry for extension mothur.cons.taxonomy. galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,325 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.mothur:TaxonomySummary from the datatype registry for extension mothur.tax.summary. galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,325 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.mothur:Frequency from the datatype registry for extension mothur.freq. galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,325 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.mothur:Quantile from the datatype registry for extension mothur.quan. galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,325 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.mothur:Quantile from the datatype registry for extension mothur.filtered.quan. galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,325 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.mothur:Quantile from the datatype registry for extension mothur.masked.quan. galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,325 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.mothur:Quantile from the datatype registry for extension mothur.filtered.masked.quan. galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,325 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.mothur:Axes from the datatype registry for extension mothur.axes. galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,325 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.mothur:SffFlow from the datatype registry for extension mothur.sff.flow. galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,325 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.mothur:CountTable from the datatype registry for extension mothur.count_table. galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,325 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.neo4j:Neo4jDB from the datatype registry for extension neostore. galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,326 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.neo4j:Neo4jDBzip from the datatype registry for extension neostore.zip. galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,326 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.tracks:UCSCTrackHub from the datatype registry for extension trackhub. galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,326 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.blast:BlastXml from the datatype registry for extension blastxml. galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,326 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.blast:BlastNucDb from the datatype registry for extension blastdbn. galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,326 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.blast:BlastProtDb from the datatype registry for extension blastdbp. galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,326 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.blast:BlastDomainDb from the datatype registry for extension blastdbd. galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,327 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.blast:LastDb from the datatype registry for extension lastdb. galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,327 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.blast:BlastNucDb5 from the datatype registry for extension blastdbn5. galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,327 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.blast:BlastProtDb5 from the datatype registry for extension blastdbp5. galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,327 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.blast:BlastDomainDb5 from the datatype registry for extension blastdbd5. galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,327 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:GenericAsn1 from the datatype registry for extension maskinfo-asn1. galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,327 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:GenericAsn1Binary from the datatype registry for extension maskinfo-asn1-binary. galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,327 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:GenericAsn1 from the datatype registry for extension pssm-asn1. galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,327 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.plant_tribes:PlantTribesKsComponents from the datatype registry for extension ptkscmp. galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,327 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.plant_tribes:Smat from the datatype registry for extension smat. galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,328 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.genetics:GenotypeMatrix from the datatype registry for extension alohomora_gts. galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,328 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.tabular:Tabular from the datatype registry for extension alohomora_map. galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,328 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.tabular:Tabular from the datatype registry for extension alohomora_maf. galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,328 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.tabular:Tabular from the datatype registry for extension alohomora_ped. galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,328 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.tabular:Tabular from the datatype registry for extension linkage_pedin. galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,328 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.genetics:DataIn from the datatype registry for extension linkage_datain. galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,328 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.genetics:MarkerMap from the datatype registry for extension linkage_map. galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,328 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.tabular:Tabular from the datatype registry for extension allegro_ihaplo. galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,328 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.tabular:Tabular from the datatype registry for extension allegro_descent. galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,328 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.genetics:AllegroLOD from the datatype registry for extension allegro_fparam. galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,328 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.genetics:IdeasPre from the datatype registry for extension ideaspre. galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,328 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.xml:Sbml from the datatype registry for extension sbml. galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,329 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.spaln:SpalnNuclDb from the datatype registry for extension spalndbnp. galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,329 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.spaln:SpalnProtDb from the datatype registry for extension spalndba. galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,329 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:RDS from the datatype registry for extension dada2_dada. galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,329 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:RDS from the datatype registry for extension dada2_errorrates. galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,330 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:RDS from the datatype registry for extension dada2_mergepairs. galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,330 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.tabular:Tabular from the datatype registry for extension dada2_sequencetable. galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,330 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.tabular:Tabular from the datatype registry for extension dada2_uniques. galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,330 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:RDS from the datatype registry for extension ampvis2. galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,330 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:Binary from the datatype registry for extension ckpt. galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,330 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:Binary from the datatype registry for extension tgz. galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,331 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.media:Wav from the datatype registry for extension wav. galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,332 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.media:Mp3 from the datatype registry for extension mp3. galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,332 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.media:Mkv from the datatype registry for extension mkv. galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,332 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.media:Mp4 from the datatype registry for extension mp4. galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,332 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.media:Flv from the datatype registry for extension flv. galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,332 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.media:Mpg from the datatype registry for extension mpg. galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,332 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.speech:TextGrid from the datatype registry for extension textgrid. galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,332 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.speech:BPF from the datatype registry for extension par. galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,332 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.tabular:Tabular from the datatype registry for extension ffindex. galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,332 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:Data from the datatype registry for extension ffdata. galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,332 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:Pretext from the datatype registry for extension pretext. galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,332 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.text:Html from the datatype registry for extension immuneml_receptors.html. galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,332 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:HexrdMaterials from the datatype registry for extension hexrd.materials.h5. galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,333 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:Npz from the datatype registry for extension npz. galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,333 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:HexrdImagesNpz from the datatype registry for extension hexrd.images.npz. galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,333 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:HexrdEtaOmeNpz from the datatype registry for extension hexrd.eta_ome.npz. galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,333 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:Npz from the datatype registry for extension hexrd.scored_orientations.npz. galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,333 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.tabular:Tabular from the datatype registry for extension hexrd.accepted_orientations. galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,333 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.text:Yaml from the datatype registry for extension hexrd.yml. galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,333 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.constructive_solid_geometry:NeperTess from the datatype registry for extension neper.tess. galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,333 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.constructive_solid_geometry:NeperTesr from the datatype registry for extension neper.tesr. galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,333 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.constructive_solid_geometry:NeperPoints from the datatype registry for extension neper.points. galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,333 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.constructive_solid_geometry:NeperPointsTabular from the datatype registry for extension neper.points.tsv. galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,333 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.constructive_solid_geometry:NeperMultiScaleCell from the datatype registry for extension neper.mscell. galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,333 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.constructive_solid_geometry:GmshMsh from the datatype registry for extension gmsh.msh. galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,333 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.constructive_solid_geometry:GmshGeo from the datatype registry for extension gmsh.geo. galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,333 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.constructive_solid_geometry:ZsetGeof from the datatype registry for extension zset.geof. galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,334 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:Binary from the datatype registry for extension stl. galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,334 [pN:main,p:76107,tN:MainThread] Overriding conflicting datatype with extension 'stl', using datatype from /scratch/rico/galaxy/lib/galaxy/config/sample/datatypes_conf.xml.sample. galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,334 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.text:Text from the datatype registry for extension pov. galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,334 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.text:PithyaResult from the datatype registry for extension pithya.result. galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,334 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.text:PithyaProperty from the datatype registry for extension pithya.property. galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,334 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.text:PithyaModel from the datatype registry for extension pithya.model. galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,334 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.text:BCSLts from the datatype registry for extension bcsl.ts. galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,334 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.text:BCSLmodel from the datatype registry for extension bcsl.model. galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,334 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.text:StormSample from the datatype registry for extension storm.sample. galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,334 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.text:StormCheck from the datatype registry for extension storm.check. galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,334 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.text:CTLresult from the datatype registry for extension ctl.result. galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,334 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.text:Castep from the datatype registry for extension castep. galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,334 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.text:Param from the datatype registry for extension param. galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,334 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.text:FormattedDensity from the datatype registry for extension den_fmt. galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,335 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.larch:AthenaProject from the datatype registry for extension prj. galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,335 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.larch:FEFFInput from the datatype registry for extension inp. galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,335 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.tabular:CSV from the datatype registry for extension sp. galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,335 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.tabular:CSV from the datatype registry for extension gds. galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,335 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.tabular:CSV from the datatype registry for extension feff. galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,335 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension feffit. galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,335 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:Binary from the datatype registry for extension bil. galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,335 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension hdr. galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,335 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.gis:Shapefile from the datatype registry for extension shp. galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,336 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:FITS from the datatype registry for extension fits. galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,336 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.chain:Chain from the datatype registry for extension chain. galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,336 [pN:main,p:76107,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.plant_tribes:PlantTribesKsComponents' galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,336 [pN:main,p:76107,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.plant_tribes:Smat' galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,336 [pN:main,p:76107,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.mothur:Sabund' galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,336 [pN:main,p:76107,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.mothur:Otu' galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,336 [pN:main,p:76107,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.mothur:GroupAbund' galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,336 [pN:main,p:76107,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.mothur:SecondaryStructureMap' galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,336 [pN:main,p:76107,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.mothur:LowerTriangleDistanceMatrix' galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,336 [pN:main,p:76107,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.mothur:SquareDistanceMatrix' galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,336 [pN:main,p:76107,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.mothur:PairwiseDistanceMatrix' galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,336 [pN:main,p:76107,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.mothur:Oligos' galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,336 [pN:main,p:76107,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.mothur:Quantile' galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,336 [pN:main,p:76107,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.mothur:Frequency' galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,336 [pN:main,p:76107,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.mothur:LaneMask' galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,337 [pN:main,p:76107,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.mothur:RefTaxonomy' galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,337 [pN:main,p:76107,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.mothur:Axes' galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,337 [pN:main,p:76107,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.constructive_solid_geometry:PlyAscii' galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,337 [pN:main,p:76107,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.constructive_solid_geometry:PlyBinary' galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,337 [pN:main,p:76107,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.constructive_solid_geometry:VtkAscii' galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,337 [pN:main,p:76107,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.constructive_solid_geometry:VtkBinary' galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,337 [pN:main,p:76107,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.constructive_solid_geometry:NeperTess' galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,337 [pN:main,p:76107,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.constructive_solid_geometry:NeperTesr' galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,337 [pN:main,p:76107,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.constructive_solid_geometry:GmshMsh' galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,337 [pN:main,p:76107,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.goldenpath:GoldenPath' galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,337 [pN:main,p:76107,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.interval:ScIdx' galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,337 [pN:main,p:76107,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.tabular:Vcf' galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,337 [pN:main,p:76107,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.binary:JP2' galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,337 [pN:main,p:76107,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.binary:TwoBit' galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,337 [pN:main,p:76107,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.binary:GeminiSQLite' galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,337 [pN:main,p:76107,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.binary:SQmass' galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,337 [pN:main,p:76107,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.binary:MzSQlite' galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,337 [pN:main,p:76107,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.binary:OSW' galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,337 [pN:main,p:76107,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.binary:PQP' galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,337 [pN:main,p:76107,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.binary:IdpDB' galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,337 [pN:main,p:76107,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.binary:ElibSQlite' galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,337 [pN:main,p:76107,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.binary:DlibSQlite' galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,337 [pN:main,p:76107,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.binary:BlibSQlite' galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,337 [pN:main,p:76107,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.binary:ChiraSQLite' galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,337 [pN:main,p:76107,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.binary:CuffDiffSQlite' galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,337 [pN:main,p:76107,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.binary:GAFASQLite' galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,337 [pN:main,p:76107,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.binary:NcbiTaxonomySQlite' galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,338 [pN:main,p:76107,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.binary:SQlite' galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,338 [pN:main,p:76107,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.binary:H5MLM' galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,338 [pN:main,p:76107,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.binary:Cool' galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,338 [pN:main,p:76107,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.binary:MCool' galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,338 [pN:main,p:76107,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.binary:Loom' galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,338 [pN:main,p:76107,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.binary:Anndata' galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,338 [pN:main,p:76107,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.binary:Biom2' galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,338 [pN:main,p:76107,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.binary:HexrdMaterials' galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,338 [pN:main,p:76107,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.binary:H5' galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,338 [pN:main,p:76107,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.binary:Grib' galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,338 [pN:main,p:76107,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.binary:HexrdImagesNpz' galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,338 [pN:main,p:76107,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.binary:HexrdEtaOmeNpz' galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,338 [pN:main,p:76107,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.binary:Npz' galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,338 [pN:main,p:76107,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.binary:Bam' galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,338 [pN:main,p:76107,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.binary:BamQuerynameSorted' galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,338 [pN:main,p:76107,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.binary:BamNative' galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,338 [pN:main,p:76107,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.binary:CRAM' galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,338 [pN:main,p:76107,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.binary:Sff' galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,338 [pN:main,p:76107,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.binary:Sra' galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,338 [pN:main,p:76107,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.binary:NetCDF' galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,338 [pN:main,p:76107,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.binary:DAA' galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,338 [pN:main,p:76107,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.binary:RMA6' galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,338 [pN:main,p:76107,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.binary:DMND' galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,338 [pN:main,p:76107,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.binary:Parquet' galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,338 [pN:main,p:76107,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.binary:BafTar' galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,338 [pN:main,p:76107,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.binary:TdfTar' galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,338 [pN:main,p:76107,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.binary:MassHunterTar' galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,339 [pN:main,p:76107,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.binary:MassLynxTar' galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,339 [pN:main,p:76107,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.binary:YepTar' galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,339 [pN:main,p:76107,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.binary:WiffTar' galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,339 [pN:main,p:76107,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.binary:Fast5ArchiveGz' galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,339 [pN:main,p:76107,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.binary:Fast5ArchiveBz2' galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,339 [pN:main,p:76107,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.binary:Fast5Archive' galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,339 [pN:main,p:76107,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.binary:Meryldb' galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,339 [pN:main,p:76107,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.binary:Bref3' galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,339 [pN:main,p:76107,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.binary:PostgresqlArchive' galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,339 [pN:main,p:76107,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.binary:ICM' galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,339 [pN:main,p:76107,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.binary:Idat' galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,339 [pN:main,p:76107,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.binary:Trr' galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,339 [pN:main,p:76107,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.binary:Dcd' galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,339 [pN:main,p:76107,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.binary:Xtc' galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,339 [pN:main,p:76107,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.binary:Cpt' galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,339 [pN:main,p:76107,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.binary:Edr' galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,339 [pN:main,p:76107,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.binary:Vel' galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,339 [pN:main,p:76107,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.binary:Xlsx' galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,339 [pN:main,p:76107,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.qiime2:QIIME2Metadata' galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,339 [pN:main,p:76107,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.qiime2:QIIME2Artifact' galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,339 [pN:main,p:76107,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.qiime2:QIIME2Visualization' galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,339 [pN:main,p:76107,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.binary:CompressedZipArchive' galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,339 [pN:main,p:76107,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.binary:Pretext' galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,339 [pN:main,p:76107,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.annotation:Augustus' galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,339 [pN:main,p:76107,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.xml:Owl' galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,340 [pN:main,p:76107,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.chain:Chain' galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,340 [pN:main,p:76107,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.triples:Rdf' galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,340 [pN:main,p:76107,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.blast:BlastXml' galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,340 [pN:main,p:76107,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.images:Gifti' galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,340 [pN:main,p:76107,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.xml:Phyloxml' galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,340 [pN:main,p:76107,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.xml:Dzi' galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,340 [pN:main,p:76107,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.xml:Sbml' galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,340 [pN:main,p:76107,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.proteomics:Dta2d' galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,340 [pN:main,p:76107,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.proteomics:Edta' galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,340 [pN:main,p:76107,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.proteomics:ConsensusXML' galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,340 [pN:main,p:76107,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.proteomics:IdXML' galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,340 [pN:main,p:76107,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.proteomics:FeatureXML' galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,340 [pN:main,p:76107,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.proteomics:MascotXML' galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,340 [pN:main,p:76107,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.proteomics:Mgf' galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,340 [pN:main,p:76107,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.proteomics:Ms2' galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,340 [pN:main,p:76107,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.proteomics:Msp' galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,340 [pN:main,p:76107,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.proteomics:MzData' galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,340 [pN:main,p:76107,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.proteomics:MzIdentML' galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,340 [pN:main,p:76107,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.proteomics:MzML' galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,340 [pN:main,p:76107,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.proteomics:MzQuantML' galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,340 [pN:main,p:76107,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.proteomics:MzTab' galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,340 [pN:main,p:76107,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.proteomics:MzTab2' galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,340 [pN:main,p:76107,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.proteomics:ParamXml' galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,340 [pN:main,p:76107,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.proteomics:MzXML' galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,341 [pN:main,p:76107,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.proteomics:NmrML' galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,341 [pN:main,p:76107,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.proteomics:Kroenik' galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,341 [pN:main,p:76107,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.proteomics:PepList' galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,341 [pN:main,p:76107,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.proteomics:PSMS' galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,341 [pN:main,p:76107,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.proteomics:PepXml' galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,341 [pN:main,p:76107,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.proteomics:ProtXML' galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,341 [pN:main,p:76107,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.proteomics:SPLib' galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,341 [pN:main,p:76107,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.proteomics:TandemXML' galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,341 [pN:main,p:76107,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.proteomics:ThermoRAW' galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,341 [pN:main,p:76107,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.proteomics:TraML' galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,341 [pN:main,p:76107,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.proteomics:TrafoXML' galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,341 [pN:main,p:76107,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.proteomics:UniProtXML' galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,341 [pN:main,p:76107,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.proteomics:XquestXML' galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,341 [pN:main,p:76107,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.proteomics:XquestSpecXML' galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,341 [pN:main,p:76107,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.proteomics:QCML' galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,341 [pN:main,p:76107,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.proteomics:Wiff' galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,341 [pN:main,p:76107,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.proteomics:PEFF' galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,341 [pN:main,p:76107,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.molecules:CML' galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,341 [pN:main,p:76107,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.xml:GenericXml' galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,341 [pN:main,p:76107,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.triples:HDT' galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,341 [pN:main,p:76107,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.triples:Turtle' galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,341 [pN:main,p:76107,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.triples:NTriples' galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,342 [pN:main,p:76107,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.triples:Jsonld' galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,342 [pN:main,p:76107,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.sequence:Maf' galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,342 [pN:main,p:76107,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.sequence:Lav' galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,342 [pN:main,p:76107,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.sequence:MemePsp' galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,342 [pN:main,p:76107,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.sequence:Fastg' galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,342 [pN:main,p:76107,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.sequence:csFasta' galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,342 [pN:main,p:76107,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.qualityscore:QualityScoreSOLiD' galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,342 [pN:main,p:76107,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.qualityscore:QualityScore454' galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,342 [pN:main,p:76107,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.molecules:SDF' galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,342 [pN:main,p:76107,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.molecules:PDB' galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,342 [pN:main,p:76107,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.molecules:Cell' galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,342 [pN:main,p:76107,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.molecules:CIF' galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,342 [pN:main,p:76107,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.molecules:ExtendedXYZ' galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,342 [pN:main,p:76107,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.molecules:XYZ' galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,342 [pN:main,p:76107,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.molecules:MOL2' galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,342 [pN:main,p:76107,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.molecules:InChI' galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,342 [pN:main,p:76107,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.molecules:FPS' galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,342 [pN:main,p:76107,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.molecules:PQR' galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,342 [pN:main,p:76107,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.molecules:GRO' galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,342 [pN:main,p:76107,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.phylip:Phylip' galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,342 [pN:main,p:76107,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.sequence:Fasta' galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,342 [pN:main,p:76107,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.sequence:FastqCSSanger' galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,343 [pN:main,p:76107,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.sequence:FastqSanger' galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,343 [pN:main,p:76107,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.sequence:Fastq' galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,343 [pN:main,p:76107,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.interval:Wiggle' galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,343 [pN:main,p:76107,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.text:Html' galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,343 [pN:main,p:76107,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.images:Pdf' galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,343 [pN:main,p:76107,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.sequence:Axt' galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,343 [pN:main,p:76107,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.sequence:Genbank' galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,343 [pN:main,p:76107,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.interval:Bed' galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,343 [pN:main,p:76107,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.interval:CustomTrack' galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,343 [pN:main,p:76107,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.interval:Gtf' galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,343 [pN:main,p:76107,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.interval:Gff' galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,343 [pN:main,p:76107,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.interval:Gff3' galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,343 [pN:main,p:76107,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.tabular:Pileup' galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,343 [pN:main,p:76107,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.tabular:Psl' galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,343 [pN:main,p:76107,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.text:Paf' galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,343 [pN:main,p:76107,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.interval:Interval' galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,343 [pN:main,p:76107,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.tabular:Sam' galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,343 [pN:main,p:76107,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.data:Newick' galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,343 [pN:main,p:76107,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.data:Nexus' galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,343 [pN:main,p:76107,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.text:IQTree' galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,344 [pN:main,p:76107,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.text:Obo' galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,344 [pN:main,p:76107,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.text:Arff' galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,344 [pN:main,p:76107,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.text:Ipynb' galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,344 [pN:main,p:76107,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.text:Biom1' galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,344 [pN:main,p:76107,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.text:ImgtJson' galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,344 [pN:main,p:76107,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.text:GeoJson' galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,344 [pN:main,p:76107,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.text:PithyaResult' galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,344 [pN:main,p:76107,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.text:BCSLts' galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,344 [pN:main,p:76107,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.text:Json' galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,344 [pN:main,p:76107,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.genetics:GenotypeMatrix' galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,344 [pN:main,p:76107,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.genetics:DataIn' galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,344 [pN:main,p:76107,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.genetics:MarkerMap' galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,344 [pN:main,p:76107,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.genetics:AllegroLOD' galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,344 [pN:main,p:76107,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.sequence:RNADotPlotMatrix' galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,344 [pN:main,p:76107,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.sequence:DotBracket' galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,344 [pN:main,p:76107,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.tabular:CMAP' galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,344 [pN:main,p:76107,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.tabular:ConnectivityTable' galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,344 [pN:main,p:76107,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.tabular:CSV' galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,344 [pN:main,p:76107,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.metacyto:mSummary' galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,344 [pN:main,p:76107,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.metacyto:mStats' galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,344 [pN:main,p:76107,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.tabular:TSV' galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,345 [pN:main,p:76107,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.tabular:MatrixMarket' galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,345 [pN:main,p:76107,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.msa:Hmmer2' galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,345 [pN:main,p:76107,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.msa:Hmmer3' galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,345 [pN:main,p:76107,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.msa:Stockholm_1_0' galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,345 [pN:main,p:76107,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.msa:MauveXmfa' galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,345 [pN:main,p:76107,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.msa:InfernalCM' galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,345 [pN:main,p:76107,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.annotation:SnapHmm' galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,345 [pN:main,p:76107,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.microarrays:Cel' galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,345 [pN:main,p:76107,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.microarrays:Gpr' galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,345 [pN:main,p:76107,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.microarrays:Gal' galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,345 [pN:main,p:76107,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.binary:RData' galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,345 [pN:main,p:76107,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.binary:RDS' galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,345 [pN:main,p:76107,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.images:Mrc2014' galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,345 [pN:main,p:76107,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.images:Jpg' galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,345 [pN:main,p:76107,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.images:Png' galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,345 [pN:main,p:76107,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.images:OMETiff' galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,345 [pN:main,p:76107,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.images:Tiff' galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,345 [pN:main,p:76107,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.images:Bmp' galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,345 [pN:main,p:76107,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.images:Gif' galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,345 [pN:main,p:76107,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.images:Im' galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,346 [pN:main,p:76107,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.images:Pcd' galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,346 [pN:main,p:76107,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.images:Pcx' galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,346 [pN:main,p:76107,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.images:Ppm' galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,346 [pN:main,p:76107,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.images:Psd' galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,346 [pN:main,p:76107,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.images:Xbm' galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,346 [pN:main,p:76107,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.images:Rgb' galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,346 [pN:main,p:76107,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.images:Pbm' galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,346 [pN:main,p:76107,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.images:Pgm' galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,346 [pN:main,p:76107,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.images:Xpm' galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,346 [pN:main,p:76107,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.images:Eps' galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,346 [pN:main,p:76107,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.images:Rast' galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,346 [pN:main,p:76107,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.images:Tck' galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,346 [pN:main,p:76107,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.images:Trk' galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,346 [pN:main,p:76107,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.images:Nifti1' galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,346 [pN:main,p:76107,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.images:Nifti2' galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,346 [pN:main,p:76107,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.images:Star' galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,346 [pN:main,p:76107,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.media:Wav' galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,346 [pN:main,p:76107,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.media:Mkv' galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,346 [pN:main,p:76107,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.media:Mp3' galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,347 [pN:main,p:76107,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.media:Mp4' galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,347 [pN:main,p:76107,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.media:Flv' galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,347 [pN:main,p:76107,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.media:Mpg' galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,347 [pN:main,p:76107,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.speech:TextGrid' galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,347 [pN:main,p:76107,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.speech:BPF' galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,347 [pN:main,p:76107,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.larch:FEFFInput' galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,347 [pN:main,p:76107,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.larch:AthenaProject' galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,347 [pN:main,p:76107,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.text:Castep' galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,347 [pN:main,p:76107,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.text:CTLresult' galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,347 [pN:main,p:76107,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.text:FormattedDensity' galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,347 [pN:main,p:76107,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.text:Param' galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,347 [pN:main,p:76107,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.text:Yaml' galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,347 [pN:main,p:76107,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.binary:OxliCountGraph' galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,347 [pN:main,p:76107,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.binary:OxliNodeGraph' galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,347 [pN:main,p:76107,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.binary:OxliTagSet' galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,347 [pN:main,p:76107,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.binary:OxliStopTags' galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,347 [pN:main,p:76107,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.binary:OxliSubset' galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,347 [pN:main,p:76107,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.binary:OxliGraphLabels' galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,348 [pN:main,p:76107,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.binary:FITS' galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,348 [pN:main,p:76107,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.neo4j:Neo4jDBzip' galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,348 [pN:main,p:76107,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.text:PithyaProperty' galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,348 [pN:main,p:76107,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.text:PithyaModel' galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,348 [pN:main,p:76107,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.text:BCSLmodel' galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,348 [pN:main,p:76107,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.text:StormSample' galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,348 [pN:main,p:76107,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.text:StormCheck' galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,351 [pN:main,p:76107,tN:MainThread] Build site file [tool-data/shared/ucsc/ucsc_build_sites.txt] not found using sample [tool-data/shared/ucsc/ucsc_build_sites.txt.sample]. galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,351 [pN:main,p:76107,tN:MainThread] Loaded build site 'ucsc': tool-data/shared/ucsc/ucsc_build_sites.txt.sample with display sites: ['main', 'test', 'archaea', 'ucla'] galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,351 [pN:main,p:76107,tN:MainThread] Loaded build site 'gbrowse': tool-data/shared/gbrowse/gbrowse_build_sites.txt with display sites: ['modencode', 'sgd_yeast', 'tair', 'wormbase', 'wormbase_ws120', 'wormbase_ws140', 'wormbase_ws170', 'wormbase_ws180', 'wormbase_ws190', 'wormbase_ws200', 'wormbase_ws204', 'wormbase_ws210', 'wormbase_ws220', 'wormbase_ws225'] galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,351 [pN:main,p:76107,tN:MainThread] Loaded build site 'ensembl': tool-data/shared/ensembl/ensembl_sites.txt galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,351 [pN:main,p:76107,tN:MainThread] Loaded build site 'ensembl_data_url': tool-data/shared/ensembl/ensembl_sites_data_URL.txt galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,351 [pN:main,p:76107,tN:MainThread] Build site file [tool-data/shared/igv/igv_build_sites.txt] not found using sample [tool-data/shared/igv/igv_build_sites.txt.sample]. galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,351 [pN:main,p:76107,tN:MainThread] Loaded build site 'igv': tool-data/shared/igv/igv_build_sites.txt.sample galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,351 [pN:main,p:76107,tN:MainThread] Build site file [tool-data/shared/rviewer/rviewer_build_sites.txt] not found using sample [tool-data/shared/rviewer/rviewer_build_sites.txt.sample]. galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,351 [pN:main,p:76107,tN:MainThread] Loaded build site 'rviewer': tool-data/shared/rviewer/rviewer_build_sites.txt.sample galaxy.util.tool_shed.tool_shed_registry DEBUG 2024-02-23 13:24:43,352 [pN:main,p:76107,tN:MainThread] Loading references to tool sheds from /tmp/tmpu7x63f_i/tool_sheds_conf.xml galaxy.util.tool_shed.tool_shed_registry DEBUG 2024-02-23 13:24:43,352 [pN:main,p:76107,tN:MainThread] Loaded reference to tool shed: Target Shed galaxy.queue_worker INFO 2024-02-23 13:24:43,352 [pN:main,p:76107,tN:MainThread] Initializing main Galaxy Queue Worker on sqlalchemy+sqlite:////tmp/tmpu7x63f_i/galaxy.sqlite?isolation_level=IMMEDIATE galaxy.tool_util.data WARNING 2024-02-23 13:24:43,359 [pN:main,p:76107,tN:MainThread] Cannot find index file '/scratch/rico/galaxytools/tools/ncbi_fcs_adaptor/test-data/ncbi_fcs_adaptor_config.tsv' for tool data table 'ncbi_fcs_adaptor_config' galaxy.tool_util.data DEBUG 2024-02-23 13:24:43,359 [pN:main,p:76107,tN:MainThread] Loaded tool data table 'ncbi_fcs_adaptor_config' from file '/scratch/rico/galaxytools/tools/ncbi_fcs_adaptor/tool_data_table_conf.xml.test' galaxy.tool_util.data WARNING 2024-02-23 13:24:43,359 [pN:main,p:76107,tN:MainThread] Cannot find index file '/scratch/rico/galaxytools/tools/ncbi_fcs_adaptor/test-data/ncbi_fcs_adaptor_databases.loc' for tool data table 'ncbi_fcs_adaptor_databases' galaxy.tool_util.data DEBUG 2024-02-23 13:24:43,359 [pN:main,p:76107,tN:MainThread] Loaded tool data table 'ncbi_fcs_adaptor_databases' from file '/scratch/rico/galaxytools/tools/ncbi_fcs_adaptor/tool_data_table_conf.xml.test' galaxy.tool_util.data WARNING 2024-02-23 13:24:43,359 [pN:main,p:76107,tN:MainThread] Cannot find index file '/scratch/rico/galaxytools/tools/ncbi_fcs_adaptor/test-data/ncbi_fcs_adaptor_divisions.tsv' for tool data table 'ncbi_fcs_adaptor_divisions' galaxy.tool_util.data DEBUG 2024-02-23 13:24:43,359 [pN:main,p:76107,tN:MainThread] Loaded tool data table 'ncbi_fcs_adaptor_divisions' from file '/scratch/rico/galaxytools/tools/ncbi_fcs_adaptor/tool_data_table_conf.xml.test' galaxy.visualization.genomes ERROR 2024-02-23 13:24:43,362 [pN:main,p:76107,tN:MainThread] Error reading twobit.loc Traceback (most recent call last): File "/scratch/rico/galaxy/lib/galaxy/visualization/genomes.py", line 220, in reload_genomes with open(twobit_path) as f: FileNotFoundError: [Errno 2] No such file or directory: '/scratch/rico/galaxy/tool-data/twobit.loc' galaxy.util WARNING 2024-02-23 13:24:43,502 [pN:main,p:76107,tN:MainThread] directory not found: /scratch/rico/galaxy/lib/galaxy/util/../../../config/plugins/activities galaxy.tools WARNING 2024-02-23 13:24:43,503 [pN:main,p:76107,tN:MainThread] The default shed tool config file (/tmp/tmpu7x63f_i/shed_tool_conf.xml) has been added to the tool_config_file option, if this is not the desired behavior, please set shed_tool_config_file to your primary shed-enabled tool config file galaxy.tool_util.toolbox.base INFO 2024-02-23 13:24:43,503 [pN:main,p:76107,tN:MainThread] Parsing the tool configuration /tmp/tmpu7x63f_i/tool_conf.xml galaxy.tool_util.toolbox.base DEBUG 2024-02-23 13:24:43,503 [pN:main,p:76107,tN:MainThread] Tool path for tool configuration /tmp/tmpu7x63f_i/tool_conf.xml is None galaxy.tool_util.toolbox.base DEBUG 2024-02-23 13:24:43,509 [pN:main,p:76107,tN:MainThread] Loaded tool id: upload1, version: 1.1.7 into tool panel.. galaxy.tool_util.toolbox.base DEBUG 2024-02-23 13:24:43,511 [pN:main,p:76107,tN:MainThread] Loaded tool id: ncbi_fcs_adaptor, version: 0.5.0+galaxy0 into tool panel.. galaxy.tools WARNING 2024-02-23 13:24:43,511 [pN:main,p:76107,tN:MainThread] The default shed tool config file (/tmp/tmpu7x63f_i/shed_tool_conf.xml) has been added to the tool_config_file option, if this is not the desired behavior, please set shed_tool_config_file to your primary shed-enabled tool config file galaxy.tool_util.toolbox.base INFO 2024-02-23 13:24:43,511 [pN:main,p:76107,tN:MainThread] Parsing the tool configuration /tmp/tmpu7x63f_i/shed_tools_conf.xml galaxy.tool_util.toolbox.base DEBUG 2024-02-23 13:24:43,511 [pN:main,p:76107,tN:MainThread] Tool path for shed tool configuration /tmp/tmpu7x63f_i/shed_tools_conf.xml is /tmp/tmpu7x63f_i/shed_tools galaxy.tools WARNING 2024-02-23 13:24:43,511 [pN:main,p:76107,tN:MainThread] The default shed tool config file (/tmp/tmpu7x63f_i/shed_tool_conf.xml) has been added to the tool_config_file option, if this is not the desired behavior, please set shed_tool_config_file to your primary shed-enabled tool config file galaxy.tool_util.toolbox.base INFO 2024-02-23 13:24:43,511 [pN:main,p:76107,tN:MainThread] Parsing the tool configuration /tmp/tmpu7x63f_i/empty_tool_conf.xml galaxy.tool_util.toolbox.base DEBUG 2024-02-23 13:24:43,511 [pN:main,p:76107,tN:MainThread] Tool path for tool configuration /tmp/tmpu7x63f_i/empty_tool_conf.xml is None galaxy.tool_util.toolbox.base DEBUG 2024-02-23 13:24:43,511 [pN:main,p:76107,tN:MainThread] Reading tools from config files finished (8.676 ms) galaxy.tool_util.toolbox.base DEBUG 2024-02-23 13:24:43,512 [pN:main,p:76107,tN:MainThread] Loaded tool id: upload1, version: 1.1.7 into tool panel.. galaxy.tool_util.toolbox.views.edam DEBUG 2024-02-23 13:24:43,512 [pN:main,p:76107,tN:MainThread] Loading EDAM tool panel finished (0.926 ms) galaxy.tool_util.toolbox.base DEBUG 2024-02-23 13:24:43,513 [pN:main,p:76107,tN:MainThread] Loaded tool id: upload1, version: 1.1.7 into tool panel.. galaxy.tool_util.toolbox.views.edam DEBUG 2024-02-23 13:24:43,513 [pN:main,p:76107,tN:MainThread] Loading EDAM tool panel finished (0.804 ms) galaxy.tool_util.toolbox.integrated_panel DEBUG 2024-02-23 13:24:43,513 [pN:main,p:76107,tN:MainThread] Writing integrated tool panel config file to '/tmp/tmpu7x63f_i/integrated_tool_panel_conf.xml' urllib3.connectionpool DEBUG 2024-02-23 13:24:44,240: Starting new HTTP connection (1): 127.0.0.1:39427 [06] Galaxy not up yet... HTTPConnectionPool(host='127.0.0.1', port=39427): Max retries exceeded with url: /api/version (Cause galaxy.util ERROR 2024-02-23 13:24:43,973 [pN:main,p:76107,tN:MainThread] Error parsing file /tmp/tmpu7x63f_i Traceback (most recent call last): File "/scratch/rico/galaxy/lib/galaxy/util/__init__.py", line 305, in parse_xml tree = etree.parse(str(fname), parser=parser) File "src/lxml/etree.pyx", line 3541, in lxml.etree.parse File "src/lxml/parser.pxi", line 1879, in lxml.etree._parseDocument File "src/lxml/parser.pxi", line 1905, in lxml.etree._parseDocumentFromURL File "src/lxml/parser.pxi", line 1808, in lxml.etree._parseDocFromFile File "src/lxml/parser.pxi", line 1180, in lxml.etree._BaseParser._parseDocFromFile File "src/lxml/parser.pxi", line 618, in lxml.etree._ParserContext._handleParseResultDoc File "src/lxml/parser.pxi", line 728, in lxml.etree._handleParseResult File "src/lxml/parser.pxi", line 657, in lxml.etree._raiseParseError File "/tmp/tmpu7x63f_i", line 1 lxml.etree.XMLSyntaxError: Document is empty, line 1, column 1 galaxy.tools.data_manager.manager ERROR 2024-02-23 13:24:43,974 [pN:main,p:76107,tN:MainThread] There was an error parsing your Data Manager config file "/tmp/tmpu7x63f_i": Document is empty, line 1, column 1 (tmpu7x63f_i, line 1) galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,975 [pN:main,p:76107,tN:MainThread] Loaded display application 'ucsc_bam' for datatype 'bam', inherit=False. galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,975 [pN:main,p:76107,tN:MainThread] Loaded display application 'ensembl_bam' for datatype 'bam', inherit=False. galaxy.datatypes.display_applications.application ERROR 2024-02-23 13:24:43,976 [pN:main,p:76107,tN:MainThread] Error loading a set of Dynamic Display Application links: Unable to find data table named "igv_broad_genomes". galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,977 [pN:main,p:76107,tN:MainThread] Loaded display application 'igv_bam' for datatype 'bam', inherit=False. galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,977 [pN:main,p:76107,tN:MainThread] Loaded display application 'igb_bam' for datatype 'bam', inherit=False. galaxy.datatypes.display_applications.application ERROR 2024-02-23 13:24:43,977 [pN:main,p:76107,tN:MainThread] Error loading a set of Dynamic Display Application links: Unable to find data table named "bam_iobio". galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,977 [pN:main,p:76107,tN:MainThread] Loaded display application 'iobio_bam' for datatype 'bam', inherit=False. galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,978 [pN:main,p:76107,tN:MainThread] Loaded display application 'igb_bed' for datatype 'bed', inherit=False. galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,978 [pN:main,p:76107,tN:MainThread] Loaded display application 'igb_bedgraph' for datatype 'bedgraph', inherit=False. galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,978 [pN:main,p:76107,tN:MainThread] Loaded display application 'ucsc_bigbed' for datatype 'bigbed', inherit=False. galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,979 [pN:main,p:76107,tN:MainThread] Loaded display application 'igb_bb' for datatype 'bigbed', inherit=False. galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,979 [pN:main,p:76107,tN:MainThread] Loaded display application 'ucsc_bigwig' for datatype 'bigwig', inherit=False. galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,979 [pN:main,p:76107,tN:MainThread] Loaded display application 'igb_bigwig' for datatype 'bigwig', inherit=False. galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,980 [pN:main,p:76107,tN:MainThread] Loaded display application 'igv_bigwig' for datatype 'bigwig', inherit=False. galaxy.datatypes.display_applications.application ERROR 2024-02-23 13:24:43,980 [pN:main,p:76107,tN:MainThread] Error loading a set of Dynamic Display Application links: Unable to find data table named "intermine_simple_display". galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,980 [pN:main,p:76107,tN:MainThread] Loaded display application 'intermine_simple' for datatype 'intermine_tabular', inherit=False. galaxy.datatypes.display_applications.application ERROR 2024-02-23 13:24:43,980 [pN:main,p:76107,tN:MainThread] Error loading a set of Dynamic Display Application links: Unable to find data table named "igv_broad_genomes". galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,980 [pN:main,p:76107,tN:MainThread] Loaded display application 'igv_fasta' for datatype 'fasta', inherit=True. galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,981 [pN:main,p:76107,tN:MainThread] Loaded display application 'ensembl_gff' for datatype 'gff', inherit=True. galaxy.datatypes.display_applications.application ERROR 2024-02-23 13:24:43,982 [pN:main,p:76107,tN:MainThread] Error loading a set of Dynamic Display Application links: Unable to find data table named "igv_broad_genomes". galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,982 [pN:main,p:76107,tN:MainThread] Loaded display application 'igv_gff' for datatype 'gff', inherit=True. galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,982 [pN:main,p:76107,tN:MainThread] Loaded display application 'igb_gtf' for datatype 'gtf', inherit=False. galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,983 [pN:main,p:76107,tN:MainThread] Loaded display application 'ensembl_interval' for datatype 'interval', inherit=True. galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,984 [pN:main,p:76107,tN:MainThread] Loaded display application 'gbrowse_interval_as_bed' for datatype 'interval', inherit=True. galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,984 [pN:main,p:76107,tN:MainThread] Loaded display application 'rviewer_interval' for datatype 'interval', inherit=True. galaxy.datatypes.display_applications.application ERROR 2024-02-23 13:24:43,984 [pN:main,p:76107,tN:MainThread] Error loading a set of Dynamic Display Application links: Unable to find data table named "igv_broad_genomes". galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,984 [pN:main,p:76107,tN:MainThread] Loaded display application 'igv_interval_as_bed' for datatype 'interval', inherit=True. galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,984 [pN:main,p:76107,tN:MainThread] Loaded display application 'avivator' for datatype 'ome.tiff', inherit=False. galaxy.datatypes.display_applications.application ERROR 2024-02-23 13:24:43,985 [pN:main,p:76107,tN:MainThread] Error loading a set of Dynamic Display Application links: Unable to find data table named "q2view_display". galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,985 [pN:main,p:76107,tN:MainThread] Loaded display application 'q2view' for datatype 'qza', inherit=False. galaxy.datatypes.display_applications.application ERROR 2024-02-23 13:24:43,985 [pN:main,p:76107,tN:MainThread] Error loading a set of Dynamic Display Application links: Unable to find data table named "q2view_display". galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,985 [pN:main,p:76107,tN:MainThread] Loaded display application 'q2view' for datatype 'qzv', inherit=False. galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,985 [pN:main,p:76107,tN:MainThread] Loaded display application 'ucsc_maf_customtrack' for datatype 'mafcustomtrack', inherit=False. galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,985 [pN:main,p:76107,tN:MainThread] Loaded display application 'minerva_tabular' for datatype 'tabular', inherit=False. galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,986 [pN:main,p:76107,tN:MainThread] Loaded display application 'ucsc_vcf' for datatype 'vcf', inherit=False. galaxy.datatypes.display_applications.application ERROR 2024-02-23 13:24:43,986 [pN:main,p:76107,tN:MainThread] Error loading a set of Dynamic Display Application links: Unable to find data table named "igv_broad_genomes". galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,986 [pN:main,p:76107,tN:MainThread] Loaded display application 'igv_vcf' for datatype 'vcf', inherit=False. galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,987 [pN:main,p:76107,tN:MainThread] Loaded display application 'rviewer_vcf' for datatype 'vcf', inherit=True. galaxy.datatypes.display_applications.application ERROR 2024-02-23 13:24:43,987 [pN:main,p:76107,tN:MainThread] Error loading a set of Dynamic Display Application links: Unable to find data table named "vcf_iobio". galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,987 [pN:main,p:76107,tN:MainThread] Loaded display application 'iobio_vcf' for datatype 'vcf', inherit=False. galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,987 [pN:main,p:76107,tN:MainThread] Loaded display application 'igb_wig' for datatype 'wig', inherit=False. galaxy.datatypes.display_applications.application ERROR 2024-02-23 13:24:43,988 [pN:main,p:76107,tN:MainThread] Error loading a set of Dynamic Display Application links: Unable to find data table named "igv_broad_genomes". galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,988 [pN:main,p:76107,tN:MainThread] Loaded display application 'igv_vcf' for datatype 'vcf_bgzip', inherit=False. galaxy.datatypes.display_applications.application ERROR 2024-02-23 13:24:43,988 [pN:main,p:76107,tN:MainThread] Error loading a set of Dynamic Display Application links: Unable to find data table named "igv_broad_genomes". galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,988 [pN:main,p:76107,tN:MainThread] Loaded display application 'igv_genbank' for datatype 'genbank', inherit=False. galaxy.datatypes.display_applications.application ERROR 2024-02-23 13:24:43,988 [pN:main,p:76107,tN:MainThread] Error loading a set of Dynamic Display Application links: Unable to find data table named "biom_simple_display". galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,988 [pN:main,p:76107,tN:MainThread] Loaded display application 'biom_simple' for datatype 'biom1', inherit=False. galaxy.datatypes.display_applications.application ERROR 2024-02-23 13:24:43,988 [pN:main,p:76107,tN:MainThread] Error loading a set of Dynamic Display Application links: Unable to find data table named "icn3d_simple_display". galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,988 [pN:main,p:76107,tN:MainThread] Loaded display application 'icn3d_simple' for datatype 'sdf', inherit=False. galaxy.datatypes.display_applications.application ERROR 2024-02-23 13:24:43,989 [pN:main,p:76107,tN:MainThread] Error loading a set of Dynamic Display Application links: Unable to find data table named "icn3d_simple_display". galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,989 [pN:main,p:76107,tN:MainThread] Loaded display application 'icn3d_simple' for datatype 'mol2', inherit=False. galaxy.datatypes.display_applications.application ERROR 2024-02-23 13:24:43,989 [pN:main,p:76107,tN:MainThread] Error loading a set of Dynamic Display Application links: Unable to find data table named "icn3d_simple_display". galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,989 [pN:main,p:76107,tN:MainThread] Loaded display application 'icn3d_simple' for datatype 'pdb', inherit=False. galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,989 [pN:main,p:76107,tN:MainThread] Loaded display application 'ucsc_trackhub' for datatype 'trackhub', inherit=False. galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,989 [pN:main,p:76107,tN:MainThread] Adding inherited display application 'ensembl_interval' to datatype 'bed' galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,989 [pN:main,p:76107,tN:MainThread] Adding inherited display application 'gbrowse_interval_as_bed' to datatype 'bed' galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,989 [pN:main,p:76107,tN:MainThread] Adding inherited display application 'rviewer_interval' to datatype 'bed' galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,989 [pN:main,p:76107,tN:MainThread] Adding inherited display application 'igv_interval_as_bed' to datatype 'bed' galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,989 [pN:main,p:76107,tN:MainThread] Adding inherited display application 'ensembl_interval' to datatype 'bedgraph' galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,989 [pN:main,p:76107,tN:MainThread] Adding inherited display application 'gbrowse_interval_as_bed' to datatype 'bedgraph' galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,989 [pN:main,p:76107,tN:MainThread] Adding inherited display application 'rviewer_interval' to datatype 'bedgraph' galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,989 [pN:main,p:76107,tN:MainThread] Adding inherited display application 'igv_interval_as_bed' to datatype 'bedgraph' galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,989 [pN:main,p:76107,tN:MainThread] Adding inherited display application 'ensembl_interval' to datatype 'bedstrict' galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,989 [pN:main,p:76107,tN:MainThread] Adding inherited display application 'gbrowse_interval_as_bed' to datatype 'bedstrict' galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,989 [pN:main,p:76107,tN:MainThread] Adding inherited display application 'rviewer_interval' to datatype 'bedstrict' galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,989 [pN:main,p:76107,tN:MainThread] Adding inherited display application 'igv_interval_as_bed' to datatype 'bedstrict' galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,989 [pN:main,p:76107,tN:MainThread] Adding inherited display application 'ensembl_interval' to datatype 'bed6' galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,989 [pN:main,p:76107,tN:MainThread] Adding inherited display application 'gbrowse_interval_as_bed' to datatype 'bed6' galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,989 [pN:main,p:76107,tN:MainThread] Adding inherited display application 'rviewer_interval' to datatype 'bed6' galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,989 [pN:main,p:76107,tN:MainThread] Adding inherited display application 'igv_interval_as_bed' to datatype 'bed6' galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,990 [pN:main,p:76107,tN:MainThread] Adding inherited display application 'ensembl_interval' to datatype 'bed12' galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,990 [pN:main,p:76107,tN:MainThread] Adding inherited display application 'gbrowse_interval_as_bed' to datatype 'bed12' galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,990 [pN:main,p:76107,tN:MainThread] Adding inherited display application 'rviewer_interval' to datatype 'bed12' galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,990 [pN:main,p:76107,tN:MainThread] Adding inherited display application 'igv_interval_as_bed' to datatype 'bed12' galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,990 [pN:main,p:76107,tN:MainThread] Adding inherited display application 'ensembl_interval' to datatype 'probed' galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,990 [pN:main,p:76107,tN:MainThread] Adding inherited display application 'gbrowse_interval_as_bed' to datatype 'probed' galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,990 [pN:main,p:76107,tN:MainThread] Adding inherited display application 'rviewer_interval' to datatype 'probed' galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,990 [pN:main,p:76107,tN:MainThread] Adding inherited display application 'igv_interval_as_bed' to datatype 'probed' galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,990 [pN:main,p:76107,tN:MainThread] Adding inherited display application 'ensembl_interval' to datatype 'chrint' galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,990 [pN:main,p:76107,tN:MainThread] Adding inherited display application 'gbrowse_interval_as_bed' to datatype 'chrint' galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,990 [pN:main,p:76107,tN:MainThread] Adding inherited display application 'rviewer_interval' to datatype 'chrint' galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,990 [pN:main,p:76107,tN:MainThread] Adding inherited display application 'igv_interval_as_bed' to datatype 'chrint' galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,990 [pN:main,p:76107,tN:MainThread] Adding inherited display application 'igv_fasta' to datatype 'fasta.gz' galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,990 [pN:main,p:76107,tN:MainThread] Adding inherited display application 'ensembl_gff' to datatype 'gff3' galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,990 [pN:main,p:76107,tN:MainThread] Adding inherited display application 'igv_gff' to datatype 'gff3' galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,990 [pN:main,p:76107,tN:MainThread] Adding inherited display application 'ensembl_gff' to datatype 'gff3.gz' galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,990 [pN:main,p:76107,tN:MainThread] Adding inherited display application 'igv_gff' to datatype 'gff3.gz' galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,990 [pN:main,p:76107,tN:MainThread] Adding inherited display application 'ensembl_gff' to datatype 'gff3.bz2' galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,990 [pN:main,p:76107,tN:MainThread] Adding inherited display application 'igv_gff' to datatype 'gff3.bz2' galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,990 [pN:main,p:76107,tN:MainThread] Adding inherited display application 'ensembl_gff' to datatype 'gtf' galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,990 [pN:main,p:76107,tN:MainThread] Adding inherited display application 'igv_gff' to datatype 'gtf' galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,991 [pN:main,p:76107,tN:MainThread] Adding inherited display application 'ensembl_interval' to datatype 'encodepeak' galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,991 [pN:main,p:76107,tN:MainThread] Adding inherited display application 'gbrowse_interval_as_bed' to datatype 'encodepeak' galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,991 [pN:main,p:76107,tN:MainThread] Adding inherited display application 'rviewer_interval' to datatype 'encodepeak' galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,991 [pN:main,p:76107,tN:MainThread] Adding inherited display application 'igv_interval_as_bed' to datatype 'encodepeak' galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,991 [pN:main,p:76107,tN:MainThread] Adding inherited display application 'igv_fasta' to datatype 'sequences' galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,991 [pN:main,p:76107,tN:MainThread] Adding inherited display application 'ensembl_interval' to datatype 'interval_tabix.gz' galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,991 [pN:main,p:76107,tN:MainThread] Adding inherited display application 'gbrowse_interval_as_bed' to datatype 'interval_tabix.gz' galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,991 [pN:main,p:76107,tN:MainThread] Adding inherited display application 'rviewer_interval' to datatype 'interval_tabix.gz' galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,991 [pN:main,p:76107,tN:MainThread] Adding inherited display application 'igv_interval_as_bed' to datatype 'interval_tabix.gz' galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,992 [pN:main,p:76107,tN:MainThread] Adding inherited display application 'ensembl_interval' to datatype 'juicer_medium_tabix.gz' galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,992 [pN:main,p:76107,tN:MainThread] Adding inherited display application 'gbrowse_interval_as_bed' to datatype 'juicer_medium_tabix.gz' galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,992 [pN:main,p:76107,tN:MainThread] Adding inherited display application 'rviewer_interval' to datatype 'juicer_medium_tabix.gz' galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,992 [pN:main,p:76107,tN:MainThread] Adding inherited display application 'igv_interval_as_bed' to datatype 'juicer_medium_tabix.gz' galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,992 [pN:main,p:76107,tN:MainThread] Adding inherited display application 'ensembl_interval' to datatype 'bed_tabix.gz' galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,992 [pN:main,p:76107,tN:MainThread] Adding inherited display application 'gbrowse_interval_as_bed' to datatype 'bed_tabix.gz' galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,992 [pN:main,p:76107,tN:MainThread] Adding inherited display application 'rviewer_interval' to datatype 'bed_tabix.gz' galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,992 [pN:main,p:76107,tN:MainThread] Adding inherited display application 'igv_interval_as_bed' to datatype 'bed_tabix.gz' galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,992 [pN:main,p:76107,tN:MainThread] Adding inherited display application 'ensembl_interval' to datatype 'gff_tabix.gz' galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,992 [pN:main,p:76107,tN:MainThread] Adding inherited display application 'gbrowse_interval_as_bed' to datatype 'gff_tabix.gz' galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,992 [pN:main,p:76107,tN:MainThread] Adding inherited display application 'rviewer_interval' to datatype 'gff_tabix.gz' galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,992 [pN:main,p:76107,tN:MainThread] Adding inherited display application 'igv_interval_as_bed' to datatype 'gff_tabix.gz' galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,993 [pN:main,p:76107,tN:MainThread] Adding inherited display application 'igv_fasta' to datatype 'mothur.align' galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,995 [pN:main,p:76107,tN:MainThread] Loaded converter: CONVERTER_uncompressed_to_gz galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,995 [pN:main,p:76107,tN:MainThread] Loaded converter: CONVERTER_gz_to_uncompressed galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,997 [pN:main,p:76107,tN:MainThread] Loaded converter: CONVERTER_uncompressed_to_gz galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,997 [pN:main,p:76107,tN:MainThread] Loaded converter: CONVERTER_gz_to_uncompressed galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,999 [pN:main,p:76107,tN:MainThread] Loaded converter: CONVERTER_uncompressed_to_gz galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,999 [pN:main,p:76107,tN:MainThread] Loaded converter: CONVERTER_gz_to_uncompressed galaxy.datatypes.registry DEBUG 2024-02-23 13:24:44,000 [pN:main,p:76107,tN:MainThread] Loaded converter: CONVERTER_Bam_Bai_0 galaxy.datatypes.registry DEBUG 2024-02-23 13:24:44,001 [pN:main,p:76107,tN:MainThread] Loaded converter: CONVERTER_bam_to_bigwig_0 galaxy.datatypes.registry DEBUG 2024-02-23 13:24:44,002 [pN:main,p:76107,tN:MainThread] Loaded converter: CONVERTER_bam_to_qname_sorted_bam galaxy.datatypes.registry DEBUG 2024-02-23 13:24:44,003 [pN:main,p:76107,tN:MainThread] Loaded converter: CONVERTER_bam_to_bigwig_0 galaxy.datatypes.registry DEBUG 2024-02-23 13:24:44,003 [pN:main,p:76107,tN:MainThread] Loaded converter: CONVERTER_bam_to_coodinate_sorted_bam galaxy.datatypes.registry DEBUG 2024-02-23 13:24:44,004 [pN:main,p:76107,tN:MainThread] Loaded converter: CONVERTER_bam_to_qname_sorted_bam galaxy.datatypes.registry DEBUG 2024-02-23 13:24:44,005 [pN:main,p:76107,tN:MainThread] Loaded converter: CONVERTER_cram_to_bam_0 galaxy.datatypes.registry DEBUG 2024-02-23 13:24:44,006 [pN:main,p:76107,tN:MainThread] Loaded converter: CONVERTER_bed_to_gff_0 galaxy.datatypes.registry DEBUG 2024-02-23 13:24:44,007 [pN:main,p:76107,tN:MainThread] Loaded converter: CONVERTER_interval_to_bgzip_0 galaxy.datatypes.registry DEBUG 2024-02-23 13:24:44,009 [pN:main,p:76107,tN:MainThread] Loaded converter: CONVERTER_interval_to_tabix_0 galaxy.datatypes.registry DEBUG 2024-02-23 13:24:44,010 [pN:main,p:76107,tN:MainThread] Loaded converter: CONVERTER_bed_gff_or_vcf_to_bigwig_0 galaxy.datatypes.registry DEBUG 2024-02-23 13:24:44,010 [pN:main,p:76107,tN:MainThread] Loaded converter: CONVERTER_bed_to_fli_0 galaxy.datatypes.registry DEBUG 2024-02-23 13:24:44,011 [pN:main,p:76107,tN:MainThread] Loaded converter: CONVERTER_bedgraph_to_bigwig galaxy.datatypes.registry DEBUG 2024-02-23 13:24:44,012 [pN:main,p:76107,tN:MainThread] Loaded converter: CONVERTER_len_to_linecount galaxy.datatypes.registry DEBUG 2024-02-23 13:24:44,012 [pN:main,p:76107,tN:MainThread] Loaded converter: CONVERTER_parquet_to_csv galaxy.datatypes.registry DEBUG 2024-02-23 13:24:44,014 [pN:main,p:76107,tN:MainThread] Loaded converter: bigwigtowig galaxy.datatypes.registry DEBUG 2024-02-23 13:24:44,016 [pN:main,p:76107,tN:MainThread] Loaded converter: CONVERTER_interval_to_bgzip_0 galaxy.datatypes.registry DEBUG 2024-02-23 13:24:44,017 [pN:main,p:76107,tN:MainThread] Loaded converter: CONVERTER_interval_to_tabix_0 galaxy.datatypes.registry DEBUG 2024-02-23 13:24:44,018 [pN:main,p:76107,tN:MainThread] Loaded converter: CONVERTER_bed_gff_or_vcf_to_bigwig_0 galaxy.datatypes.registry DEBUG 2024-02-23 13:24:44,019 [pN:main,p:76107,tN:MainThread] Loaded converter: csv_to_tabular galaxy.datatypes.registry DEBUG 2024-02-23 13:24:44,019 [pN:main,p:76107,tN:MainThread] Loaded converter: tabular_to_csv galaxy.datatypes.registry DEBUG 2024-02-23 13:24:44,020 [pN:main,p:76107,tN:MainThread] Loaded converter: CONVERTER_fasta_to_tabular galaxy.datatypes.registry DEBUG 2024-02-23 13:24:44,021 [pN:main,p:76107,tN:MainThread] Loaded converter: CONVERTER_fasta_to_bowtie_base_index galaxy.datatypes.registry DEBUG 2024-02-23 13:24:44,021 [pN:main,p:76107,tN:MainThread] Loaded converter: CONVERTER_fasta_to_bowtie_color_index galaxy.datatypes.registry DEBUG 2024-02-23 13:24:44,022 [pN:main,p:76107,tN:MainThread] Loaded converter: CONVERTER_fasta_to_2bit galaxy.datatypes.registry DEBUG 2024-02-23 13:24:44,023 [pN:main,p:76107,tN:MainThread] Loaded converter: CONVERTER_fasta_to_len galaxy.datatypes.registry DEBUG 2024-02-23 13:24:44,024 [pN:main,p:76107,tN:MainThread] Loaded converter: CONVERTER_fasta_to_fai galaxy.datatypes.registry DEBUG 2024-02-23 13:24:44,025 [pN:main,p:76107,tN:MainThread] Loaded converter: CONVERTER_uncompressed_to_gz galaxy.datatypes.registry DEBUG 2024-02-23 13:24:44,025 [pN:main,p:76107,tN:MainThread] Loaded converter: CONVERTER_gz_to_uncompressed galaxy.datatypes.registry DEBUG 2024-02-23 13:24:44,026 [pN:main,p:76107,tN:MainThread] Loaded converter: CONVERTER_fastq_to_fqtoc0 galaxy.datatypes.registry DEBUG 2024-02-23 13:24:44,027 [pN:main,p:76107,tN:MainThread] Loaded converter: CONVERTER_uncompressed_to_gz galaxy.datatypes.registry DEBUG 2024-02-23 13:24:44,028 [pN:main,p:76107,tN:MainThread] Loaded converter: CONVERTER_gz_to_uncompressed galaxy.datatypes.registry DEBUG 2024-02-23 13:24:44,029 [pN:main,p:76107,tN:MainThread] Loaded converter: CONVERTER_bz2_to_uncompressed galaxy.datatypes.registry DEBUG 2024-02-23 13:24:44,029 [pN:main,p:76107,tN:MainThread] Loaded converter: CONVERTER_fastq_to_fqtoc0 galaxy.datatypes.registry DEBUG 2024-02-23 13:24:44,030 [pN:main,p:76107,tN:MainThread] Loaded converter: CONVERTER_uncompressed_to_gz galaxy.datatypes.registry DEBUG 2024-02-23 13:24:44,031 [pN:main,p:76107,tN:MainThread] Loaded converter: CONVERTER_gz_to_uncompressed galaxy.datatypes.registry DEBUG 2024-02-23 13:24:44,032 [pN:main,p:76107,tN:MainThread] Loaded converter: CONVERTER_bz2_to_uncompressed galaxy.datatypes.registry DEBUG 2024-02-23 13:24:44,033 [pN:main,p:76107,tN:MainThread] Loaded converter: CONVERTER_fastq_to_fqtoc0 galaxy.datatypes.registry DEBUG 2024-02-23 13:24:44,034 [pN:main,p:76107,tN:MainThread] Loaded converter: CONVERTER_uncompressed_to_gz galaxy.datatypes.registry DEBUG 2024-02-23 13:24:44,034 [pN:main,p:76107,tN:MainThread] Loaded converter: CONVERTER_gz_to_uncompressed galaxy.datatypes.registry DEBUG 2024-02-23 13:24:44,035 [pN:main,p:76107,tN:MainThread] Loaded converter: CONVERTER_bz2_to_uncompressed galaxy.datatypes.registry DEBUG 2024-02-23 13:24:44,036 [pN:main,p:76107,tN:MainThread] Loaded converter: CONVERTER_fastq_to_fqtoc0 galaxy.datatypes.registry DEBUG 2024-02-23 13:24:44,037 [pN:main,p:76107,tN:MainThread] Loaded converter: CONVERTER_uncompressed_to_gz galaxy.datatypes.registry DEBUG 2024-02-23 13:24:44,038 [pN:main,p:76107,tN:MainThread] Loaded converter: CONVERTER_gz_to_uncompressed galaxy.datatypes.registry DEBUG 2024-02-23 13:24:44,039 [pN:main,p:76107,tN:MainThread] Loaded converter: CONVERTER_bz2_to_uncompressed galaxy.datatypes.registry DEBUG 2024-02-23 13:24:44,040 [pN:main,p:76107,tN:MainThread] Loaded converter: CONVERTER_fastq_to_fqtoc0 galaxy.datatypes.registry DEBUG 2024-02-23 13:24:44,041 [pN:main,p:76107,tN:MainThread] Loaded converter: CONVERTER_uncompressed_to_gz galaxy.datatypes.registry DEBUG 2024-02-23 13:24:44,042 [pN:main,p:76107,tN:MainThread] Loaded converter: CONVERTER_gz_to_uncompressed galaxy.datatypes.registry DEBUG 2024-02-23 13:24:44,042 [pN:main,p:76107,tN:MainThread] Loaded converter: CONVERTER_bz2_to_uncompressed galaxy.datatypes.registry DEBUG 2024-02-23 13:24:44,043 [pN:main,p:76107,tN:MainThread] Loaded converter: CONVERTER_gff_to_bed_0 galaxy.datatypes.registry DEBUG 2024-02-23 13:24:44,044 [pN:main,p:76107,tN:MainThread] Loaded converter: CONVERTER_gff_to_interval_index_0 galaxy.datatypes.registry DEBUG 2024-02-23 13:24:44,044 [pN:main,p:76107,tN:MainThread] Loaded converter: CONVERTER_bed_gff_or_vcf_to_bigwig_0 galaxy.datatypes.registry DEBUG 2024-02-23 13:24:44,045 [pN:main,p:76107,tN:MainThread] Loaded converter: CONVERTER_gff_to_fli_0 galaxy.datatypes.registry DEBUG 2024-02-23 13:24:44,047 [pN:main,p:76107,tN:MainThread] Loaded converter: CONVERTER_interval_to_bgzip_0 galaxy.datatypes.registry DEBUG 2024-02-23 13:24:44,048 [pN:main,p:76107,tN:MainThread] Loaded converter: CONVERTER_interval_to_tabix_0 galaxy.datatypes.registry DEBUG 2024-02-23 13:24:44,049 [pN:main,p:76107,tN:MainThread] Loaded converter: CONVERTER_uncompressed_to_gz galaxy.datatypes.registry DEBUG 2024-02-23 13:24:44,050 [pN:main,p:76107,tN:MainThread] Loaded converter: CONVERTER_gz_to_uncompressed galaxy.datatypes.registry DEBUG 2024-02-23 13:24:44,051 [pN:main,p:76107,tN:MainThread] Loaded converter: CONVERTER_bz2_to_uncompressed galaxy.datatypes.registry DEBUG 2024-02-23 13:24:44,051 [pN:main,p:76107,tN:MainThread] Loaded converter: CONVERTER_gff_to_interval_index_0 galaxy.datatypes.registry DEBUG 2024-02-23 13:24:44,052 [pN:main,p:76107,tN:MainThread] Loaded converter: CONVERTER_bed_gff_or_vcf_to_bigwig_0 galaxy.datatypes.registry DEBUG 2024-02-23 13:24:44,053 [pN:main,p:76107,tN:MainThread] Loaded converter: CONVERTER_interval_to_bed_0 galaxy.datatypes.registry DEBUG 2024-02-23 13:24:44,053 [pN:main,p:76107,tN:MainThread] Loaded converter: CONVERTER_interval_to_bedstrict_0 galaxy.datatypes.registry DEBUG 2024-02-23 13:24:44,054 [pN:main,p:76107,tN:MainThread] Loaded converter: CONVERTER_interval_to_bed6_0 galaxy.datatypes.registry DEBUG 2024-02-23 13:24:44,055 [pN:main,p:76107,tN:MainThread] Loaded converter: CONVERTER_interval_to_bed12_0 galaxy.datatypes.registry DEBUG 2024-02-23 13:24:44,056 [pN:main,p:76107,tN:MainThread] Loaded converter: CONVERTER_interval_to_bgzip_0 galaxy.datatypes.registry DEBUG 2024-02-23 13:24:44,058 [pN:main,p:76107,tN:MainThread] Loaded converter: CONVERTER_interval_to_tabix_0 galaxy.datatypes.registry DEBUG 2024-02-23 13:24:44,058 [pN:main,p:76107,tN:MainThread] Loaded converter: CONVERTER_interval_to_bigwig_0 galaxy.datatypes.registry DEBUG 2024-02-23 13:24:44,059 [pN:main,p:76107,tN:MainThread] Loaded converter: CONVERTER_picard_interval_list_to_bed6 galaxy.datatypes.registry DEBUG 2024-02-23 13:24:44,060 [pN:main,p:76107,tN:MainThread] Loaded converter: CONVERTER_tar_to_directory galaxy.datatypes.registry DEBUG 2024-02-23 13:24:44,061 [pN:main,p:76107,tN:MainThread] Loaded converter: CONVERTER_uncompressed_to_gz galaxy.datatypes.registry DEBUG 2024-02-23 13:24:44,062 [pN:main,p:76107,tN:MainThread] Loaded converter: CONVERTER_gz_to_uncompressed galaxy.datatypes.registry DEBUG 2024-02-23 13:24:44,063 [pN:main,p:76107,tN:MainThread] Loaded converter: CONVERTER_uncompressed_to_gz galaxy.datatypes.registry DEBUG 2024-02-23 13:24:44,063 [pN:main,p:76107,tN:MainThread] Loaded converter: CONVERTER_gz_to_uncompressed galaxy.datatypes.registry DEBUG 2024-02-23 13:24:44,064 [pN:main,p:76107,tN:MainThread] Loaded converter: CONVERTER_uncompressed_to_gz galaxy.datatypes.registry DEBUG 2024-02-23 13:24:44,065 [pN:main,p:76107,tN:MainThread] Loaded converter: CONVERTER_gz_to_uncompressed galaxy.datatypes.registry DEBUG 2024-02-23 13:24:44,066 [pN:main,p:76107,tN:MainThread] Loaded converter: CONVERTER_maf_to_fasta_0 galaxy.datatypes.registry DEBUG 2024-02-23 13:24:44,066 [pN:main,p:76107,tN:MainThread] Loaded converter: CONVERTER_maf_to_interval_0 galaxy.datatypes.registry DEBUG 2024-02-23 13:24:44,068 [pN:main,p:76107,tN:MainThread] Loaded converter: CONVERTER_interval_to_tabix_0 galaxy.datatypes.registry DEBUG 2024-02-23 13:24:44,069 [pN:main,p:76107,tN:MainThread] Loaded converter: CONVERTER_interval_to_bgzip_0 galaxy.datatypes.registry DEBUG 2024-02-23 13:24:44,070 [pN:main,p:76107,tN:MainThread] Loaded converter: CONVERTER_bed_gff_or_vcf_to_bigwig_0 galaxy.datatypes.registry DEBUG 2024-02-23 13:24:44,072 [pN:main,p:76107,tN:MainThread] Loaded converter: CONVERTER_interval_to_bgzip_0 galaxy.datatypes.registry DEBUG 2024-02-23 13:24:44,073 [pN:main,p:76107,tN:MainThread] Loaded converter: CONVERTER_interval_to_tabix_0 galaxy.datatypes.registry DEBUG 2024-02-23 13:24:44,074 [pN:main,p:76107,tN:MainThread] Loaded converter: CONVERTER_sam_to_unsorted_bam galaxy.datatypes.registry DEBUG 2024-02-23 13:24:44,075 [pN:main,p:76107,tN:MainThread] Loaded converter: CONVERTER_bam_to_coodinate_sorted_bam galaxy.datatypes.registry DEBUG 2024-02-23 13:24:44,075 [pN:main,p:76107,tN:MainThread] Loaded converter: CONVERTER_bam_to_qname_sorted_bam galaxy.datatypes.registry DEBUG 2024-02-23 13:24:44,076 [pN:main,p:76107,tN:MainThread] Loaded converter: CONVERTER_sam_to_bigwig_0 galaxy.datatypes.registry DEBUG 2024-02-23 13:24:44,077 [pN:main,p:76107,tN:MainThread] Loaded converter: tabular_to_dbnsfp galaxy.datatypes.registry DEBUG 2024-02-23 13:24:44,077 [pN:main,p:76107,tN:MainThread] Loaded converter: tabular_to_csv galaxy.datatypes.registry DEBUG 2024-02-23 13:24:44,078 [pN:main,p:76107,tN:MainThread] Loaded converter: CONVERTER_uncompressed_to_gz galaxy.datatypes.registry DEBUG 2024-02-23 13:24:44,079 [pN:main,p:76107,tN:MainThread] Loaded converter: CONVERTER_gz_to_uncompressed galaxy.datatypes.registry DEBUG 2024-02-23 13:24:44,081 [pN:main,p:76107,tN:MainThread] Loaded converter: CONVERTER_interval_to_bgzip_0 galaxy.datatypes.registry DEBUG 2024-02-23 13:24:44,081 [pN:main,p:76107,tN:MainThread] Loaded converter: CONVERTER_vcf_to_vcf_bgzip_0 galaxy.datatypes.registry DEBUG 2024-02-23 13:24:44,083 [pN:main,p:76107,tN:MainThread] Loaded converter: CONVERTER_interval_to_tabix_0 galaxy.datatypes.registry DEBUG 2024-02-23 13:24:44,083 [pN:main,p:76107,tN:MainThread] Loaded converter: CONVERTER_bed_gff_or_vcf_to_bigwig_0 galaxy.datatypes.registry DEBUG 2024-02-23 13:24:44,084 [pN:main,p:76107,tN:MainThread] Loaded converter: CONVERTER_uncompressed_to_gz galaxy.datatypes.registry DEBUG 2024-02-23 13:24:44,085 [pN:main,p:76107,tN:MainThread] Loaded converter: CONVERTER_bcf_uncompressed_to_bcf galaxy.datatypes.registry DEBUG 2024-02-23 13:24:44,086 [pN:main,p:76107,tN:MainThread] Loaded converter: CONVERTER_bcf_uncompressed_to_bcf galaxy.datatypes.registry DEBUG 2024-02-23 13:24:44,087 [pN:main,p:76107,tN:MainThread] Loaded converter: CONVERTER_wig_to_bigwig galaxy.datatypes.registry DEBUG 2024-02-23 13:24:44,087 [pN:main,p:76107,tN:MainThread] Loaded converter: CONVERTER_wiggle_to_interval_0 galaxy.datatypes.registry DEBUG 2024-02-23 13:24:44,088 [pN:main,p:76107,tN:MainThread] Loaded converter: CONVERTER_vcf_bgzip_to_tabix_0 galaxy.datatypes.registry DEBUG 2024-02-23 13:24:44,089 [pN:main,p:76107,tN:MainThread] Loaded converter: CONVERTER_gz_to_uncompressed galaxy.datatypes.registry DEBUG 2024-02-23 13:24:44,089 [pN:main,p:76107,tN:MainThread] Loaded converter: lped2fpedconvert galaxy.datatypes.registry DEBUG 2024-02-23 13:24:44,090 [pN:main,p:76107,tN:MainThread] Loaded converter: lped2pbedconvert galaxy.datatypes.registry DEBUG 2024-02-23 13:24:44,091 [pN:main,p:76107,tN:MainThread] Loaded converter: pbed2lpedconvert galaxy.datatypes.registry DEBUG 2024-02-23 13:24:44,091 [pN:main,p:76107,tN:MainThread] Loaded converter: pbed2ldindepconvert galaxy.datatypes.registry DEBUG 2024-02-23 13:24:44,092 [pN:main,p:76107,tN:MainThread] Loaded converter: CONVERTER_uncompressed_to_gz galaxy.datatypes.registry DEBUG 2024-02-23 13:24:44,093 [pN:main,p:76107,tN:MainThread] Loaded converter: CONVERTER_gz_to_uncompressed galaxy.datatypes.registry DEBUG 2024-02-23 13:24:44,094 [pN:main,p:76107,tN:MainThread] Loaded converter: CONVERTER_biom galaxy.datatypes.registry DEBUG 2024-02-23 13:24:44,095 [pN:main,p:76107,tN:MainThread] Loaded converter: CONVERTER_biom galaxy.datatypes.registry DEBUG 2024-02-23 13:24:44,098 [pN:main,p:76107,tN:MainThread] Loaded converter: CONVERTER_molecules galaxy.datatypes.registry DEBUG 2024-02-23 13:24:44,102 [pN:main,p:76107,tN:MainThread] Loaded converter: CONVERTER_molecules galaxy.datatypes.registry DEBUG 2024-02-23 13:24:44,105 [pN:main,p:76107,tN:MainThread] Loaded converter: CONVERTER_molecules galaxy.datatypes.registry DEBUG 2024-02-23 13:24:44,105 [pN:main,p:76107,tN:MainThread] Loaded converter: CONVERTER_SMILES_to_MOL galaxy.datatypes.registry DEBUG 2024-02-23 13:24:44,109 [pN:main,p:76107,tN:MainThread] Loaded converter: CONVERTER_molecules galaxy.datatypes.registry DEBUG 2024-02-23 13:24:44,110 [pN:main,p:76107,tN:MainThread] Loaded converter: CONVERTER_smiles_to_smiles galaxy.datatypes.registry DEBUG 2024-02-23 13:24:44,113 [pN:main,p:76107,tN:MainThread] Loaded converter: CONVERTER_molecules galaxy.datatypes.registry DEBUG 2024-02-23 13:24:44,116 [pN:main,p:76107,tN:MainThread] Loaded converter: CONVERTER_molecules galaxy.datatypes.registry DEBUG 2024-02-23 13:24:44,119 [pN:main,p:76107,tN:MainThread] Loaded converter: CONVERTER_molecules galaxy.datatypes.registry DEBUG 2024-02-23 13:24:44,122 [pN:main,p:76107,tN:MainThread] Loaded converter: CONVERTER_molecules galaxy.datatypes.registry DEBUG 2024-02-23 13:24:44,125 [pN:main,p:76107,tN:MainThread] Loaded converter: CONVERTER_molecules galaxy.datatypes.registry DEBUG 2024-02-23 13:24:44,128 [pN:main,p:76107,tN:MainThread] Loaded converter: CONVERTER_molecules galaxy.datatypes.registry DEBUG 2024-02-23 13:24:44,129 [pN:main,p:76107,tN:MainThread] Loaded converter: CONVERTER_inchi_to_mol galaxy.datatypes.registry DEBUG 2024-02-23 13:24:44,132 [pN:main,p:76107,tN:MainThread] Loaded converter: CONVERTER_molecules galaxy.datatypes.registry DEBUG 2024-02-23 13:24:44,136 [pN:main,p:76107,tN:MainThread] Loaded converter: CONVERTER_molecules galaxy.datatypes.registry DEBUG 2024-02-23 13:24:44,139 [pN:main,p:76107,tN:MainThread] Loaded converter: CONVERTER_molecules galaxy.datatypes.registry DEBUG 2024-02-23 13:24:44,142 [pN:main,p:76107,tN:MainThread] Loaded converter: CONVERTER_molecules galaxy.datatypes.registry DEBUG 2024-02-23 13:24:44,145 [pN:main,p:76107,tN:MainThread] Loaded converter: CONVERTER_molecules galaxy.datatypes.registry DEBUG 2024-02-23 13:24:44,148 [pN:main,p:76107,tN:MainThread] Loaded converter: CONVERTER_molecules galaxy.datatypes.registry DEBUG 2024-02-23 13:24:44,151 [pN:main,p:76107,tN:MainThread] Loaded converter: CONVERTER_molecules galaxy.datatypes.registry DEBUG 2024-02-23 13:24:44,155 [pN:main,p:76107,tN:MainThread] Loaded converter: CONVERTER_molecules galaxy.datatypes.registry DEBUG 2024-02-23 13:24:44,158 [pN:main,p:76107,tN:MainThread] Loaded converter: CONVERTER_molecules galaxy.datatypes.registry DEBUG 2024-02-23 13:24:44,161 [pN:main,p:76107,tN:MainThread] Loaded converter: CONVERTER_molecules galaxy.datatypes.registry DEBUG 2024-02-23 13:24:44,162 [pN:main,p:76107,tN:MainThread] Loaded converter: CONVERTER_mol2_to_mol galaxy.datatypes.registry DEBUG 2024-02-23 13:24:44,165 [pN:main,p:76107,tN:MainThread] Loaded converter: CONVERTER_molecules galaxy.datatypes.registry DEBUG 2024-02-23 13:24:44,166 [pN:main,p:76107,tN:MainThread] Loaded converter: CONVERTER_cml_to_smiles galaxy.datatypes.registry DEBUG 2024-02-23 13:24:44,169 [pN:main,p:76107,tN:MainThread] Loaded converter: CONVERTER_molecules galaxy.datatypes.registry DEBUG 2024-02-23 13:24:44,172 [pN:main,p:76107,tN:MainThread] Loaded converter: CONVERTER_molecules galaxy.datatypes.registry DEBUG 2024-02-23 13:24:44,175 [pN:main,p:76107,tN:MainThread] Loaded converter: CONVERTER_molecules galaxy.datatypes.registry DEBUG 2024-02-23 13:24:44,176 [pN:main,p:76107,tN:MainThread] Loaded converter: CONVERTER_Pdb_to_Gro_0 galaxy.datatypes.registry DEBUG 2024-02-23 13:24:44,177 [pN:main,p:76107,tN:MainThread] Loaded converter: CONVERTER_mdconvert galaxy.datatypes.registry DEBUG 2024-02-23 13:24:44,178 [pN:main,p:76107,tN:MainThread] Loaded converter: CONVERTER_mdconvert galaxy.datatypes.registry DEBUG 2024-02-23 13:24:44,180 [pN:main,p:76107,tN:MainThread] Loaded converter: CONVERTER_mdconvert galaxy.datatypes.registry DEBUG 2024-02-23 13:24:44,181 [pN:main,p:76107,tN:MainThread] Loaded converter: CONVERTER_mdconvert galaxy.datatypes.registry DEBUG 2024-02-23 13:24:44,182 [pN:main,p:76107,tN:MainThread] Loaded converter: CONVERTER_mdconvert galaxy.datatypes.registry DEBUG 2024-02-23 13:24:44,183 [pN:main,p:76107,tN:MainThread] Loaded converter: CONVERTER_mdconvert galaxy.datatypes.registry DEBUG 2024-02-23 13:24:44,184 [pN:main,p:76107,tN:MainThread] Loaded converter: CONVERTER_Gro_to_Pdb_0 galaxy.datatypes.registry DEBUG 2024-02-23 13:24:44,185 [pN:main,p:76107,tN:MainThread] Loaded converter: CONVERTER_ref_to_seq_taxomony galaxy.datatypes.registry DEBUG 2024-02-23 13:24:44,185 [pN:main,p:76107,tN:MainThread] Loaded converter: CONVERTER_neostorezip_to_neostore galaxy.datatypes.registry DEBUG 2024-02-23 13:24:44,186 [pN:main,p:76107,tN:MainThread] Loaded external metadata tool: __SET_METADATA__ galaxy.tools.special_tools DEBUG 2024-02-23 13:24:44,187 [pN:main,p:76107,tN:MainThread] Loaded history export tool: __EXPORT_HISTORY__ galaxy.tools.special_tools DEBUG 2024-02-23 13:24:44,188 [pN:main,p:76107,tN:MainThread] Loaded history export to uri tool: __EXPORT_HISTORY_TO_URI__ galaxy.tools.special_tools DEBUG 2024-02-23 13:24:44,188 [pN:main,p:76107,tN:MainThread] Loaded history import tool: __IMPORT_HISTORY__ galaxy.tools.special_tools DEBUG 2024-02-23 13:24:44,189 [pN:main,p:76107,tN:MainThread] Loaded data fetch tool: __DATA_FETCH__ galaxy.visualization.plugins.registry INFO 2024-02-23 13:24:44,190 [pN:main,p:76107,tN:MainThread] VisualizationsRegistry, loaded plugin: PCA_3Dplot galaxy.visualization.plugins.registry INFO 2024-02-23 13:24:44,190 [pN:main,p:76107,tN:MainThread] VisualizationsRegistry, loaded plugin: aequatus galaxy.visualization.plugins.registry INFO 2024-02-23 13:24:44,190 [pN:main,p:76107,tN:MainThread] VisualizationsRegistry, loaded plugin: annotate_image galaxy.visualization.plugins.config_parser INFO 2024-02-23 13:24:44,191 [pN:main,p:76107,tN:MainThread] template syntax is deprecated: use entry_point instead galaxy.visualization.plugins.registry INFO 2024-02-23 13:24:44,191 [pN:main,p:76107,tN:MainThread] VisualizationsRegistry, loaded plugin: chiraviz galaxy.visualization.plugins.config_parser INFO 2024-02-23 13:24:44,192 [pN:main,p:76107,tN:MainThread] Visualizations plugin disabled: Circster. Skipping... galaxy.visualization.plugins.config_parser INFO 2024-02-23 13:24:44,192 [pN:main,p:76107,tN:MainThread] template syntax is deprecated: use entry_point instead galaxy.visualization.plugins.registry INFO 2024-02-23 13:24:44,192 [pN:main,p:76107,tN:MainThread] VisualizationsRegistry, loaded plugin: csg galaxy.visualization.plugins.registry INFO 2024-02-23 13:24:44,193 [pN:main,p:76107,tN:MainThread] VisualizationsRegistry, loaded plugin: cytoscape galaxy.visualization.plugins.registry INFO 2024-02-23 13:24:44,193 [pN:main,p:76107,tN:MainThread] VisualizationsRegistry, loaded plugin: drawrna galaxy.visualization.plugins.registry INFO 2024-02-23 13:24:44,194 [pN:main,p:76107,tN:MainThread] VisualizationsRegistry, loaded plugin: editor galaxy.visualization.plugins.registry INFO 2024-02-23 13:24:44,195 [pN:main,p:76107,tN:MainThread] VisualizationsRegistry, loaded plugin: example galaxy.visualization.plugins.config_parser INFO 2024-02-23 13:24:44,195 [pN:main,p:76107,tN:MainThread] template syntax is deprecated: use entry_point instead galaxy.visualization.plugins.registry INFO 2024-02-23 13:24:44,196 [pN:main,p:76107,tN:MainThread] VisualizationsRegistry, loaded plugin: fits_image_viewer galaxy.visualization.plugins.config_parser INFO 2024-02-23 13:24:44,196 [pN:main,p:76107,tN:MainThread] template syntax is deprecated: use entry_point instead galaxy.visualization.plugins.registry INFO 2024-02-23 13:24:44,196 [pN:main,p:76107,tN:MainThread] VisualizationsRegistry, loaded plugin: graphviz galaxy.visualization.plugins.registry INFO 2024-02-23 13:24:44,197 [pN:main,p:76107,tN:MainThread] VisualizationsRegistry, loaded plugin: h5web galaxy.visualization.plugins.registry INFO 2024-02-23 13:24:44,198 [pN:main,p:76107,tN:MainThread] VisualizationsRegistry, loaded plugin: heatmap_cluster galaxy.visualization.plugins.registry INFO 2024-02-23 13:24:44,200 [pN:main,p:76107,tN:MainThread] VisualizationsRegistry, loaded plugin: heatmap_default galaxy.visualization.plugins.config_parser INFO 2024-02-23 13:24:44,200 [pN:main,p:76107,tN:MainThread] template syntax is deprecated: use entry_point instead galaxy.visualization.plugins.registry INFO 2024-02-23 13:24:44,200 [pN:main,p:76107,tN:MainThread] VisualizationsRegistry, loaded plugin: hivtrace galaxy.visualization.plugins.config_parser INFO 2024-02-23 13:24:44,200 [pN:main,p:76107,tN:MainThread] template syntax is deprecated: use entry_point instead galaxy.visualization.plugins.registry INFO 2024-02-23 13:24:44,200 [pN:main,p:76107,tN:MainThread] VisualizationsRegistry, loaded plugin: hyphyvision galaxy.visualization.plugins.registry INFO 2024-02-23 13:24:44,202 [pN:main,p:76107,tN:MainThread] VisualizationsRegistry, loaded plugin: jqplot_bar galaxy.visualization.plugins.registry INFO 2024-02-23 13:24:44,203 [pN:main,p:76107,tN:MainThread] VisualizationsRegistry, loaded plugin: jqplot_box galaxy.visualization.plugins.registry INFO 2024-02-23 13:24:44,204 [pN:main,p:76107,tN:MainThread] VisualizationsRegistry, loaded plugin: jqplot_histogram galaxy.visualization.plugins.registry INFO 2024-02-23 13:24:44,205 [pN:main,p:76107,tN:MainThread] VisualizationsRegistry, loaded plugin: jqplot_line galaxy.visualization.plugins.registry INFO 2024-02-23 13:24:44,207 [pN:main,p:76107,tN:MainThread] VisualizationsRegistry, loaded plugin: jqplot_scatter galaxy.visualization.plugins.config_parser INFO 2024-02-23 13:24:44,207 [pN:main,p:76107,tN:MainThread] template syntax is deprecated: use entry_point instead galaxy.visualization.plugins.registry INFO 2024-02-23 13:24:44,207 [pN:main,p:76107,tN:MainThread] VisualizationsRegistry, loaded plugin: audio_player galaxy.visualization.plugins.config_parser INFO 2024-02-23 13:24:44,207 [pN:main,p:76107,tN:MainThread] template syntax is deprecated: use entry_point instead galaxy.visualization.plugins.registry INFO 2024-02-23 13:24:44,208 [pN:main,p:76107,tN:MainThread] VisualizationsRegistry, loaded plugin: video_player galaxy.visualization.plugins.registry INFO 2024-02-23 13:24:44,208 [pN:main,p:76107,tN:MainThread] VisualizationsRegistry, loaded plugin: msa galaxy.visualization.plugins.config_parser INFO 2024-02-23 13:24:44,209 [pN:main,p:76107,tN:MainThread] template syntax is deprecated: use entry_point instead galaxy.visualization.plugins.registry INFO 2024-02-23 13:24:44,209 [pN:main,p:76107,tN:MainThread] VisualizationsRegistry, loaded plugin: mvpapp galaxy.visualization.plugins.registry INFO 2024-02-23 13:24:44,209 [pN:main,p:76107,tN:MainThread] VisualizationsRegistry, loaded plugin: ngl galaxy.visualization.plugins.registry INFO 2024-02-23 13:24:44,210 [pN:main,p:76107,tN:MainThread] VisualizationsRegistry, loaded plugin: nora galaxy.visualization.plugins.registry INFO 2024-02-23 13:24:44,212 [pN:main,p:76107,tN:MainThread] VisualizationsRegistry, loaded plugin: nvd3_bar galaxy.visualization.plugins.registry INFO 2024-02-23 13:24:44,213 [pN:main,p:76107,tN:MainThread] VisualizationsRegistry, loaded plugin: nvd3_bar_stacked galaxy.visualization.plugins.registry INFO 2024-02-23 13:24:44,214 [pN:main,p:76107,tN:MainThread] VisualizationsRegistry, loaded plugin: nvd3_histogram galaxy.visualization.plugins.registry INFO 2024-02-23 13:24:44,215 [pN:main,p:76107,tN:MainThread] VisualizationsRegistry, loaded plugin: nvd3_histogram_discrete galaxy.visualization.plugins.registry INFO 2024-02-23 13:24:44,217 [pN:main,p:76107,tN:MainThread] VisualizationsRegistry, loaded plugin: nvd3_horizontal galaxy.visualization.plugins.registry INFO 2024-02-23 13:24:44,218 [pN:main,p:76107,tN:MainThread] VisualizationsRegistry, loaded plugin: nvd3_horizontal_stacked galaxy.visualization.plugins.registry INFO 2024-02-23 13:24:44,219 [pN:main,p:76107,tN:MainThread] VisualizationsRegistry, loaded plugin: nvd3_line galaxy.visualization.plugins.registry INFO 2024-02-23 13:24:44,221 [pN:main,p:76107,tN:MainThread] VisualizationsRegistry, loaded plugin: nvd3_line_focus galaxy.visualization.plugins.registry INFO 2024-02-23 13:24:44,223 [pN:main,p:76107,tN:MainThread] VisualizationsRegistry, loaded plugin: nvd3_pie galaxy.visualization.plugins.registry INFO 2024-02-23 13:24:44,226 [pN:main,p:76107,tN:MainThread] VisualizationsRegistry, loaded plugin: nvd3_scatter galaxy.visualization.plugins.registry INFO 2024-02-23 13:24:44,231 [pN:main,p:76107,tN:MainThread] VisualizationsRegistry, loaded plugin: nvd3_stackedarea galaxy.visualization.plugins.registry INFO 2024-02-23 13:24:44,234 [pN:main,p:76107,tN:MainThread] VisualizationsRegistry, loaded plugin: nvd3_stackedarea_full galaxy.visualization.plugins.registry INFO 2024-02-23 13:24:44,235 [pN:main,p:76107,tN:MainThread] VisualizationsRegistry, loaded plugin: nvd3_stackedarea_stream galaxy.visualization.plugins.registry INFO 2024-02-23 13:24:44,236 [pN:main,p:76107,tN:MainThread] VisualizationsRegistry, loaded plugin: openlayers galaxy.visualization.plugins.registry INFO 2024-02-23 13:24:44,237 [pN:main,p:76107,tN:MainThread] VisualizationsRegistry, loaded plugin: openseadragon galaxy.visualization.plugins.registry INFO 2024-02-23 13:24:44,237 [pN:main,p:76107,tN:MainThread] VisualizationsRegistry, loaded plugin: phylocanvas galaxy.visualization.plugins.registry INFO 2024-02-23 13:24:44,240 [pN:main,p:76107,tN:MainThread] VisualizationsRegistry, loaded plugin: phyloviz galaxy.visualization.plugins.registry INFO 2024-02-23 13:24:44,240 [pN:main,p:76107,tN:MainThread] VisualizationsRegistry, loaded plugin: pv galaxy.visualization.plugins.registry INFO 2024-02-23 13:24:44,241 [pN:main,p:76107,tN:MainThread] VisualizationsRegistry, loaded plugin: scatterplot galaxy.visualization.plugins.config_parser INFO 2024-02-23 13:24:44,241 [pN:main,p:76107,tN:MainThread] Visualizations plugin disabled: Sweepster. Skipping... galaxy.visualization.plugins.registry INFO 2024-02-23 13:24:44,241 [pN:main,p:76107,tN:MainThread] VisualizationsRegistry, loaded plugin: trackster galaxy.visualization.plugins.registry INFO 2024-02-23 13:24:44,242 [pN:main,p:76107,tN:MainThread] VisualizationsRegistry, loaded plugin: ts_visjs galaxy.visualization.plugins.config_parser INFO 2024-02-23 13:24:44,242 [pN:main,p:76107,tN:MainThread] template syntax is deprecated: use entry_point instead galaxy.visualization.plugins.registry INFO 2024-02-23 13:24:44,242 [pN:main,p:76107,tN:MainThread] VisualizationsRegistry, loaded plugin: unipept galaxy.visualization.plugins.registry INFO 2024-02-23 13:24:44,242 [pN:main,p:76107,tN:MainThread] VisualizationsRegistry, loaded plugin: venn galaxy.tours._impl INFO 2024-02-23 13:24:44,258 [pN:main,p:76107,tN:MainThread] Loaded tour 'core.galaxy_ui' galaxy.tours._impl INFO 2024-02-23 13:24:44,269 [pN:main,p:76107,tN:MainThread] Loaded tour 'core.deferred' galaxy.tours._impl INFO 2024-02-23 13:24:44,277 [pN:main,p:76107,tN:MainThread] Loaded tour 'core.history' galaxy.tours._impl INFO 2024-02-23 13:24:44,284 [pN:main,p:76107,tN:MainThread] Loaded tour 'core.windows' galaxy.workflow.scheduling_manager INFO 2024-02-23 13:24:44,287 [pN:main,p:76107,tN:MainThread] No workflow schedulers plugin config file defined, using default scheduler. galaxy.web_stack.handlers INFO 2024-02-23 13:24:44,287 [pN:main,p:76107,tN:MainThread] WorkflowSchedulingManager: No job handler assignment method is set, defaulting to 'HANDLER_ASSIGNMENT_METHODS.DB_SKIP_LOCKED', set the `assign_with` attribute on <handlers> to override the default galaxy.workflow.scheduling_manager DEBUG 2024-02-23 13:24:44,288 [pN:main,p:76107,tN:MainThread] Starting workflow schedulers galaxy.app INFO 2024-02-23 13:24:44,289 [pN:main,p:76107,tN:MainThread] Galaxy app startup finished (2168.414 ms) galaxy.web.framework.base DEBUG 2024-02-23 13:24:44,306 [pN:main,p:76107,tN:MainThread] Enabling 'user' controller, class: User galaxy.web.framework.base DEBUG 2024-02-23 13:24:44,306 [pN:main,p:76107,tN:MainThread] Enabling 'data_manager' controller, class: DataManager galaxy.web.framework.base DEBUG 2024-02-23 13:24:44,306 [pN:main,p:76107,tN:MainThread] Enabling 'async' controller, class: ASync galaxy.web.framework.base DEBUG 2024-02-23 13:24:44,307 [pN:main,p:76107,tN:MainThread] Enabling 'tag' controller, class: TagsController galaxy.web.framework.base DEBUG 2024-02-23 13:24:44,310 [pN:main,p:76107,tN:MainThread] Enabling 'page' controller, class: PageController galaxy.web.framework.base DEBUG 2024-02-23 13:24:44,310 [pN:main,p:76107,tN:MainThread] Enabling 'root' controller, class: RootController galaxy.web.framework.base DEBUG 2024-02-23 13:24:44,310 [pN:main,p:76107,tN:MainThread] Enabling 'tool_runner' controller, class: ToolRunner galaxy.web.framework.base DEBUG 2024-02-23 13:24:44,311 [pN:main,p:76107,tN:MainThread] Enabling 'error' controller, class: Error galaxy.web.framework.base DEBUG 2024-02-23 13:24:44,311 [pN:main,p:76107,tN:MainThread] Enabling 'forms' controller, class: Forms galaxy.web.framework.base DEBUG 2024-02-23 13:24:44,320 [pN:main,p:76107,tN:MainThread] Enabling 'admin_toolshed' controller, class: AdminGalaxy galaxy.web.framework.base DEBUG 2024-02-23 13:24:44,320 [pN:main,p:76107,tN:MainThread] Enabling 'admin_toolshed' controller, class: AdminToolshed galaxy.web.framework.base DEBUG 2024-02-23 13:24:44,321 [pN:main,p:76107,tN:MainThread] Enabling 'visualization' controller, class: VisualizationController galaxy.web.framework.base DEBUG 2024-02-23 13:24:44,321 [pN:main,p:76107,tN:MainThread] Enabling 'shed_tool_static' controller, class: ShedToolStatic galaxy.web.framework.base DEBUG 2024-02-23 13:24:44,322 [pN:main,p:76107,tN:MainThread] Enabling 'authnz' controller, class: JSAppLauncher galaxy.web.framework.base DEBUG 2024-02-23 13:24:44,322 [pN:main,p:76107,tN:MainThread] Enabling 'authnz' controller, class: OIDC galaxy.web.framework.base DEBUG 2024-02-23 13:24:44,323 [pN:main,p:76107,tN:MainThread] Enabling 'workflow' controller, class: WorkflowController galaxy.web.framework.base DEBUG 2024-02-23 13:24:44,324 [pN:main,p:76107,tN:MainThread] Enabling 'history' controller, class: HistoryController galaxy.web.framework.base DEBUG 2024-02-23 13:24:44,342 [pN:main,p:76107,tN:MainThread] Enabling 'dataset' controller, class: DatasetInterface galaxy.web.framework.base DEBUG 2024-02-23 13:24:44,342 [pN:main,p:76107,tN:MainThread] Enabling 'admin' controller, class: AdminGalaxy galaxy.web.framework.base DEBUG 2024-02-23 13:24:44,776 [pN:main,p:76107,tN:MainThread] Enabling 'library_datasets' API controller, class: LibraryDatasetsController galaxy.web.framework.base DEBUG 2024-02-23 13:24:44,872 [pN:main,p:76107,tN:MainThread] Enabling 'jobs' API controller, class: JobController galaxy.web.framework.base DEBUG 2024-02-23 13:24:44,946 [pN:main,p:76107,tN:MainThread] Enabling 'job_files' API controller, class: JobFilesAPIController urllib3.connectionpool DEBUG 2024-02-23 13:24:45,245: Starting new HTTP connection (1): 127.0.0.1:39427 [07] Galaxy not up yet... HTTPConnectionPool(host='127.0.0.1', port=39427): Max retries exceeded with url: /api/version (Cause galaxy.web.framework.base DEBUG 2024-02-23 13:24:44,976 [pN:main,p:76107,tN:MainThread] Enabling 'toolshed' API controller, class: ToolShedController galaxy.web.framework.base DEBUG 2024-02-23 13:24:44,986 [pN:main,p:76107,tN:MainThread] Enabling 'tools' API controller, class: ToolsController galaxy.web.framework.base DEBUG 2024-02-23 13:24:45,062 [pN:main,p:76107,tN:MainThread] Enabling 'trs_consumer' API controller, class: TrsConsumeAPIController galaxy.web.framework.base DEBUG 2024-02-23 13:24:45,063 [pN:main,p:76107,tN:MainThread] Enabling 'history_dataset_extended_metadata' API controller, class: HistoryDatasetExtendMetadataController galaxy.web.framework.base DEBUG 2024-02-23 13:24:45,063 [pN:main,p:76107,tN:MainThread] Enabling 'library_dataset_extended_metadata' API controller, class: LibraryDatasetExtendMetadataController galaxy.web.framework.base DEBUG 2024-02-23 13:24:45,063 [pN:main,p:76107,tN:MainThread] Enabling 'container_resolution' API controller, class: ContainerResolutionAPIController galaxy.web.framework.base DEBUG 2024-02-23 13:24:45,064 [pN:main,p:76107,tN:MainThread] Enabling 'job_ports' API controller, class: JobPortsAPIController galaxy.web.framework.base DEBUG 2024-02-23 13:24:45,064 [pN:main,p:76107,tN:MainThread] Enabling 'tool_dependencies' API controller, class: ToolDependenciesAPIController galaxy.web.framework.base DEBUG 2024-02-23 13:24:45,152 [pN:main,p:76107,tN:MainThread] Enabling 'history_content_provenance' API controller, class: HDAProvenanceController galaxy.web.framework.base DEBUG 2024-02-23 13:24:45,152 [pN:main,p:76107,tN:MainThread] Enabling 'ldda_provenance' API controller, class: LDDAProvenanceController galaxy.web.framework.base DEBUG 2024-02-23 13:24:45,152 [pN:main,p:76107,tN:MainThread] Enabling 'tool_entry_points' API controller, class: ToolEntryPointsAPIController galaxy.web.framework.base DEBUG 2024-02-23 13:24:45,236 [pN:main,p:76107,tN:MainThread] Enabling 'authenticate' API controller, class: AuthenticationController galaxy.web.framework.base DEBUG 2024-02-23 13:24:45,497 [pN:main,p:76107,tN:MainThread] Enabling 'trs_search' API controller, class: TrsSearchAPIController galaxy.web.framework.base DEBUG 2024-02-23 13:24:45,530 [pN:main,p:76107,tN:MainThread] Enabling 'tool_shed_repositories' API controller, class: ToolShedRepositoriesController galaxy.web.framework.base DEBUG 2024-02-23 13:24:45,646 [pN:main,p:76107,tN:MainThread] Enabling 'forms' API controller, class: FormDefinitionAPIController galaxy.web.framework.base DEBUG 2024-02-23 13:24:45,819 [pN:main,p:76107,tN:MainThread] Enabling 'workflows' API controller, class: WorkflowsAPIController galaxy.web.framework.base DEBUG 2024-02-23 13:24:45,819 [pN:main,p:76107,tN:MainThread] Enabling 'uploads' API controller, class: UploadsAPIController urllib3.connectionpool DEBUG 2024-02-23 13:24:46,250: Starting new HTTP connection (1): 127.0.0.1:39427 [08] Galaxy not up yet... HTTPConnectionPool(host='127.0.0.1', port=39427): Max retries exceeded with url: /api/version (Cause galaxy.web.framework.base DEBUG 2024-02-23 13:24:46,315 [pN:main,p:76107,tN:MainThread] Enabling 'history_annotations' API controller, class: HistoryAnnotationsController galaxy.web.framework.base DEBUG 2024-02-23 13:24:46,315 [pN:main,p:76107,tN:MainThread] Enabling 'history_content_annotations' API controller, class: HistoryContentAnnotationsController galaxy.web.framework.base DEBUG 2024-02-23 13:24:46,315 [pN:main,p:76107,tN:MainThread] Enabling 'workflow_annotations' API controller, class: WorkflowAnnotationsController galaxy.web.framework.base DEBUG 2024-02-23 13:24:46,360 [pN:main,p:76107,tN:MainThread] Enabling 'visualizations' API controller, class: VisualizationsController galaxy.web.framework.base DEBUG 2024-02-23 13:24:46,361 [pN:main,p:76107,tN:MainThread] Enabling 'sanitize_allow' API controller, class: SanitizeAllowController galaxy.web.framework.base DEBUG 2024-02-23 13:24:46,361 [pN:main,p:76107,tN:MainThread] Enabling 'page_revisions' API controller, class: PageRevisionsController galaxy.web.framework.base DEBUG 2024-02-23 13:24:46,432 [pN:main,p:76107,tN:MainThread] Enabling 'library_contents' API controller, class: LibraryContentsController galaxy.web.framework.base DEBUG 2024-02-23 13:24:46,551 [pN:main,p:76107,tN:MainThread] Enabling 'users' API controller, class: UserAPIController galaxy.web.framework.base DEBUG 2024-02-23 13:24:46,552 [pN:main,p:76107,tN:MainThread] Enabling 'cloudauthz' API controller, class: CloudAuthzController galaxy.web.framework.base DEBUG 2024-02-23 13:24:46,552 [pN:main,p:76107,tN:MainThread] Enabling 'webhooks' API controller, class: WebhooksController galaxy.web.framework.base DEBUG 2024-02-23 13:24:46,626 [pN:main,p:76107,tN:MainThread] Enabling 'plugins' API controller, class: PluginsController galaxy.web.framework.base DEBUG 2024-02-23 13:24:46,662 [pN:main,p:76107,tN:MainThread] Enabling 'dynamic_tools' API controller, class: DynamicToolsController galaxy.webapps.util DEBUG 2024-02-23 13:24:46,945 [pN:main,p:76107,tN:MainThread] Enabling 'paste.httpexceptions' middleware galaxy.webapps.util DEBUG 2024-02-23 13:24:46,946 [pN:main,p:76107,tN:MainThread] Enabling 'RemoteUser' middleware galaxy.webapps.util DEBUG 2024-02-23 13:24:46,946 [pN:main,p:76107,tN:MainThread] Enabling 'ErrorMiddleware' middleware galaxy.webapps.util DEBUG 2024-02-23 13:24:46,946 [pN:main,p:76107,tN:MainThread] Enabling 'TusMiddleware' middleware galaxy.webapps.util DEBUG 2024-02-23 13:24:46,946 [pN:main,p:76107,tN:MainThread] Enabling 'XForwardedHostMiddleware' middleware galaxy.webapps.util DEBUG 2024-02-23 13:24:46,946 [pN:main,p:76107,tN:MainThread] Enabling 'RequestIDMiddleware' middleware galaxy.webapps.util DEBUG 2024-02-23 13:24:46,946 [pN:main,p:76107,tN:MainThread] Enabling 'build_url_map' middleware galaxy.webapps.galaxy.buildapp DEBUG 2024-02-23 13:24:46,946 [pN:main,p:76107,tN:MainThread] Prior to webapp return, Galaxy thread <_MainThread(MainThread, started 139763045857088)> is alive. urllib3.connectionpool DEBUG 2024-02-23 13:24:47,254: Starting new HTTP connection (1): 127.0.0.1:39427 [09] Galaxy not up yet... HTTPConnectionPool(host='127.0.0.1', port=39427): Max retries exceeded with url: /api/version (Cause urllib3.connectionpool DEBUG 2024-02-23 13:24:48,259: Starting new HTTP connection (1): 127.0.0.1:39427 [10] Galaxy not up yet... HTTPConnectionPool(host='127.0.0.1', port=39427): Max retries exceeded with url: /api/version (Cause galaxy.web_stack DEBUG 2024-02-23 13:24:48,550 [pN:main.1,p:76310,tN:Thread-2] server_name set to: main.1 galaxy.jobs.manager DEBUG 2024-02-23 13:24:48,552 [pN:main.1,p:76310,tN:Thread-2] Initializing job handler galaxy.jobs INFO 2024-02-23 13:24:48,552 [pN:main.1,p:76310,tN:Thread-2] Handler 'main.1' will load all configured runner plugins galaxy.jobs.runners.state_handler_factory DEBUG 2024-02-23 13:24:48,561 [pN:main.1,p:76310,tN:Thread-2] Loaded 'failure' state handler from module galaxy.jobs.runners.state_handlers.resubmit galaxy.jobs DEBUG 2024-02-23 13:24:48,562 [pN:main.1,p:76310,tN:Thread-2] Loaded job runner 'galaxy.jobs.runners.local:LocalJobRunner' as 'local' galaxy.jobs.handler DEBUG 2024-02-23 13:24:48,562 [pN:main.1,p:76310,tN:Thread-2] Loaded job runners plugins: local galaxy.jobs.runners DEBUG 2024-02-23 13:24:48,562 [pN:main.1,p:76310,tN:Thread-2] Starting 4 LocalRunner workers galaxy.jobs.handler DEBUG 2024-02-23 13:24:48,577 [pN:main.1,p:76310,tN:Thread-2] Handler queue starting for jobs assigned to handler: main.1 galaxy.jobs.handler INFO 2024-02-23 13:24:48,615 [pN:main.1,p:76310,tN:JobHandlerQueue.monitor_thread] Handler job grabber initialized with 'HANDLER_ASSIGNMENT_METHODS.DB_SKIP_LOCKED' assignment method for handler 'main.1', tag(s): galaxy.jobs.handler INFO 2024-02-23 13:24:48,617 [pN:main.1,p:76310,tN:Thread-2] job handler queue started galaxy.jobs.handler INFO 2024-02-23 13:24:48,623 [pN:main.1,p:76310,tN:Thread-2] job handler stop queue started galaxy.jobs.handler INFO 2024-02-23 13:24:48,626 [pN:main.1,p:76310,tN:WorkflowRequestMonitor.monitor_thread] Handler job grabber initialized with 'HANDLER_ASSIGNMENT_METHODS.DB_SKIP_LOCKED' assignment method for handler 'main.1', tag(s): _default_, None galaxy.queue_worker INFO 2024-02-23 13:24:48,633 [pN:main.1,p:76310,tN:Thread-2] Binding and starting galaxy control worker for main.1 galaxy.queue_worker DEBUG 2024-02-23 13:24:48,648 [pN:main.1,p:76310,tN:Thread-2] Executing toolbox reload on 'main.1' galaxy.util WARNING 2024-02-23 13:24:48,716 [pN:main.1,p:76310,tN:Thread-2] directory not found: /scratch/rico/galaxy/lib/galaxy/util/../../../config/plugins/activities galaxy.tools WARNING 2024-02-23 13:24:48,730 [pN:main.1,p:76310,tN:Thread-2] The default shed tool config file (/tmp/tmpu7x63f_i/shed_tool_conf.xml) has been added to the tool_config_file option, if this is not the desired behavior, please set shed_tool_config_file to your primary shed-enabled tool config file galaxy.tool_util.toolbox.base INFO 2024-02-23 13:24:48,730 [pN:main.1,p:76310,tN:Thread-2] Parsing the tool configuration /tmp/tmpu7x63f_i/tool_conf.xml galaxy.tool_util.toolbox.base DEBUG 2024-02-23 13:24:48,731 [pN:main.1,p:76310,tN:Thread-2] Tool path for tool configuration /tmp/tmpu7x63f_i/tool_conf.xml is None galaxy.tools WARNING 2024-02-23 13:24:48,731 [pN:main.1,p:76310,tN:Thread-2] The default shed tool config file (/tmp/tmpu7x63f_i/shed_tool_conf.xml) has been added to the tool_config_file option, if this is not the desired behavior, please set shed_tool_config_file to your primary shed-enabled tool config file galaxy.tool_util.toolbox.base INFO 2024-02-23 13:24:48,731 [pN:main.1,p:76310,tN:Thread-2] Parsing the tool configuration /tmp/tmpu7x63f_i/shed_tools_conf.xml galaxy.tool_util.toolbox.base DEBUG 2024-02-23 13:24:48,732 [pN:main.1,p:76310,tN:Thread-2] Tool path for shed tool configuration /tmp/tmpu7x63f_i/shed_tools_conf.xml is /tmp/tmpu7x63f_i/shed_tools galaxy.tools WARNING 2024-02-23 13:24:48,732 [pN:main.1,p:76310,tN:Thread-2] The default shed tool config file (/tmp/tmpu7x63f_i/shed_tool_conf.xml) has been added to the tool_config_file option, if this is not the desired behavior, please set shed_tool_config_file to your primary shed-enabled tool config file galaxy.tool_util.toolbox.base INFO 2024-02-23 13:24:48,732 [pN:main.1,p:76310,tN:Thread-2] Parsing the tool configuration /tmp/tmpu7x63f_i/empty_tool_conf.xml galaxy.tool_util.toolbox.base DEBUG 2024-02-23 13:24:48,732 [pN:main.1,p:76310,tN:Thread-2] Tool path for tool configuration /tmp/tmpu7x63f_i/empty_tool_conf.xml is None galaxy.tool_util.toolbox.base DEBUG 2024-02-23 13:24:48,732 [pN:main.1,p:76310,tN:Thread-2] Reading tools from config files finished (2.373 ms) galaxy.tool_util.toolbox.base DEBUG 2024-02-23 13:24:48,733 [pN:main.1,p:76310,tN:Thread-2] Loaded tool id: upload1, version: 1.1.7 into tool panel.. galaxy.tool_util.toolbox.base DEBUG 2024-02-23 13:24:48,733 [pN:main.1,p:76310,tN:Thread-2] Loading tool panel finished (0.504 ms) galaxy.tool_util.toolbox.base DEBUG 2024-02-23 13:24:48,737 [pN:main.1,p:76310,tN:Thread-2] Loaded tool id: upload1, version: 1.1.7 into tool panel.. galaxy.tool_util.toolbox.views.edam DEBUG 2024-02-23 13:24:48,737 [pN:main.1,p:76310,tN:Thread-2] Loading EDAM tool panel finished (4.084 ms) galaxy.tool_util.toolbox.base DEBUG 2024-02-23 13:24:48,739 [pN:main.1,p:76310,tN:Thread-2] Loaded tool id: upload1, version: 1.1.7 into tool panel.. galaxy.tool_util.toolbox.views.edam DEBUG 2024-02-23 13:24:48,739 [pN:main.1,p:76310,tN:Thread-2] Loading EDAM tool panel finished (1.589 ms) galaxy.datatypes.registry DEBUG 2024-02-23 13:24:48,740 [pN:main.1,p:76310,tN:Thread-2] Loaded converter: CONVERTER_uncompressed_to_gz galaxy.datatypes.registry DEBUG 2024-02-23 13:24:48,740 [pN:main.1,p:76310,tN:Thread-2] Loaded converter: CONVERTER_gz_to_uncompressed galaxy.datatypes.registry DEBUG 2024-02-23 13:24:48,741 [pN:main.1,p:76310,tN:Thread-2] Loaded converter: CONVERTER_uncompressed_to_gz galaxy.datatypes.registry DEBUG 2024-02-23 13:24:48,741 [pN:main.1,p:76310,tN:Thread-2] Loaded converter: CONVERTER_gz_to_uncompressed galaxy.datatypes.registry DEBUG 2024-02-23 13:24:48,741 [pN:main.1,p:76310,tN:Thread-2] Loaded converter: CONVERTER_uncompressed_to_gz galaxy.datatypes.registry DEBUG 2024-02-23 13:24:48,742 [pN:main.1,p:76310,tN:Thread-2] Loaded converter: CONVERTER_gz_to_uncompressed galaxy.datatypes.registry DEBUG 2024-02-23 13:24:48,742 [pN:main.1,p:76310,tN:Thread-2] Loaded converter: CONVERTER_Bam_Bai_0 galaxy.datatypes.registry DEBUG 2024-02-23 13:24:48,743 [pN:main.1,p:76310,tN:Thread-2] Loaded converter: CONVERTER_bam_to_bigwig_0 galaxy.datatypes.registry DEBUG 2024-02-23 13:24:48,745 [pN:main.1,p:76310,tN:Thread-2] Loaded converter: CONVERTER_bam_to_qname_sorted_bam galaxy.datatypes.registry DEBUG 2024-02-23 13:24:48,746 [pN:main.1,p:76310,tN:Thread-2] Loaded converter: CONVERTER_bam_to_bigwig_0 galaxy.datatypes.registry DEBUG 2024-02-23 13:24:48,746 [pN:main.1,p:76310,tN:Thread-2] Loaded converter: CONVERTER_bam_to_coodinate_sorted_bam galaxy.datatypes.registry DEBUG 2024-02-23 13:24:48,746 [pN:main.1,p:76310,tN:Thread-2] Loaded converter: CONVERTER_bam_to_qname_sorted_bam galaxy.model.database_heartbeat DEBUG 2024-02-23 13:24:48,746 [pN:main.1,p:76310,tN:database_heartbeart_main.1.thread] main.1 is config watcher galaxy.datatypes.registry DEBUG 2024-02-23 13:24:48,748 [pN:main.1,p:76310,tN:Thread-2] Loaded converter: CONVERTER_cram_to_bam_0 galaxy.datatypes.registry DEBUG 2024-02-23 13:24:48,750 [pN:main.1,p:76310,tN:Thread-2] Loaded converter: CONVERTER_bed_to_gff_0 galaxy.datatypes.registry DEBUG 2024-02-23 13:24:48,751 [pN:main.1,p:76310,tN:Thread-2] Loaded converter: CONVERTER_interval_to_bgzip_0 galaxy.datatypes.registry DEBUG 2024-02-23 13:24:48,752 [pN:main.1,p:76310,tN:Thread-2] Loaded converter: CONVERTER_interval_to_tabix_0 galaxy.datatypes.registry DEBUG 2024-02-23 13:24:48,752 [pN:main.1,p:76310,tN:Thread-2] Loaded converter: CONVERTER_bed_gff_or_vcf_to_bigwig_0 galaxy.datatypes.registry DEBUG 2024-02-23 13:24:48,753 [pN:main.1,p:76310,tN:Thread-2] Loaded converter: CONVERTER_bed_to_fli_0 galaxy.datatypes.registry DEBUG 2024-02-23 13:24:48,753 [pN:main.1,p:76310,tN:Thread-2] Loaded converter: CONVERTER_bedgraph_to_bigwig galaxy.datatypes.registry DEBUG 2024-02-23 13:24:48,753 [pN:main.1,p:76310,tN:Thread-2] Loaded converter: CONVERTER_len_to_linecount galaxy.datatypes.registry DEBUG 2024-02-23 13:24:48,753 [pN:main.1,p:76310,tN:Thread-2] Loaded converter: CONVERTER_parquet_to_csv galaxy.datatypes.registry DEBUG 2024-02-23 13:24:48,753 [pN:main.1,p:76310,tN:Thread-2] Loaded converter: bigwigtowig galaxy.datatypes.registry DEBUG 2024-02-23 13:24:48,753 [pN:main.1,p:76310,tN:Thread-2] Loaded converter: CONVERTER_interval_to_bgzip_0 galaxy.datatypes.registry DEBUG 2024-02-23 13:24:48,753 [pN:main.1,p:76310,tN:Thread-2] Loaded converter: CONVERTER_interval_to_tabix_0 galaxy.datatypes.registry DEBUG 2024-02-23 13:24:48,754 [pN:main.1,p:76310,tN:Thread-2] Loaded converter: CONVERTER_bed_gff_or_vcf_to_bigwig_0 galaxy.datatypes.registry DEBUG 2024-02-23 13:24:48,754 [pN:main.1,p:76310,tN:Thread-2] Loaded converter: csv_to_tabular galaxy.datatypes.registry DEBUG 2024-02-23 13:24:48,754 [pN:main.1,p:76310,tN:Thread-2] Loaded converter: tabular_to_csv galaxy.datatypes.registry DEBUG 2024-02-23 13:24:48,754 [pN:main.1,p:76310,tN:Thread-2] Loaded converter: CONVERTER_fasta_to_tabular galaxy.datatypes.registry DEBUG 2024-02-23 13:24:48,755 [pN:main.1,p:76310,tN:Thread-2] Loaded converter: CONVERTER_fasta_to_bowtie_base_index galaxy.datatypes.registry DEBUG 2024-02-23 13:24:48,755 [pN:main.1,p:76310,tN:Thread-2] Loaded converter: CONVERTER_fasta_to_bowtie_color_index galaxy.datatypes.registry DEBUG 2024-02-23 13:24:48,755 [pN:main.1,p:76310,tN:Thread-2] Loaded converter: CONVERTER_fasta_to_2bit galaxy.datatypes.registry DEBUG 2024-02-23 13:24:48,756 [pN:main.1,p:76310,tN:Thread-2] Loaded converter: CONVERTER_fasta_to_len galaxy.datatypes.registry DEBUG 2024-02-23 13:24:48,756 [pN:main.1,p:76310,tN:Thread-2] Loaded converter: CONVERTER_fasta_to_fai galaxy.datatypes.registry DEBUG 2024-02-23 13:24:48,757 [pN:main.1,p:76310,tN:Thread-2] Loaded converter: CONVERTER_uncompressed_to_gz galaxy.datatypes.registry DEBUG 2024-02-23 13:24:48,757 [pN:main.1,p:76310,tN:Thread-2] Loaded converter: CONVERTER_gz_to_uncompressed galaxy.datatypes.registry DEBUG 2024-02-23 13:24:48,757 [pN:main.1,p:76310,tN:Thread-2] Loaded converter: CONVERTER_fastq_to_fqtoc0 galaxy.datatypes.registry DEBUG 2024-02-23 13:24:48,765 [pN:main.1,p:76310,tN:Thread-2] Loaded converter: CONVERTER_uncompressed_to_gz galaxy.datatypes.registry DEBUG 2024-02-23 13:24:48,766 [pN:main.1,p:76310,tN:Thread-2] Loaded converter: CONVERTER_gz_to_uncompressed galaxy.datatypes.registry DEBUG 2024-02-23 13:24:48,766 [pN:main.1,p:76310,tN:Thread-2] Loaded converter: CONVERTER_bz2_to_uncompressed galaxy.datatypes.registry DEBUG 2024-02-23 13:24:48,766 [pN:main.1,p:76310,tN:Thread-2] Loaded converter: CONVERTER_fastq_to_fqtoc0 galaxy.datatypes.registry DEBUG 2024-02-23 13:24:48,766 [pN:main.1,p:76310,tN:Thread-2] Loaded converter: CONVERTER_uncompressed_to_gz galaxy.datatypes.registry DEBUG 2024-02-23 13:24:48,766 [pN:main.1,p:76310,tN:Thread-2] Loaded converter: CONVERTER_gz_to_uncompressed galaxy.datatypes.registry DEBUG 2024-02-23 13:24:48,766 [pN:main.1,p:76310,tN:Thread-2] Loaded converter: CONVERTER_bz2_to_uncompressed galaxy.datatypes.registry DEBUG 2024-02-23 13:24:48,767 [pN:main.1,p:76310,tN:Thread-2] Loaded converter: CONVERTER_fastq_to_fqtoc0 galaxy.datatypes.registry DEBUG 2024-02-23 13:24:48,767 [pN:main.1,p:76310,tN:Thread-2] Loaded converter: CONVERTER_uncompressed_to_gz galaxy.datatypes.registry DEBUG 2024-02-23 13:24:48,767 [pN:main.1,p:76310,tN:Thread-2] Loaded converter: CONVERTER_gz_to_uncompressed galaxy.datatypes.registry DEBUG 2024-02-23 13:24:48,767 [pN:main.1,p:76310,tN:Thread-2] Loaded converter: CONVERTER_bz2_to_uncompressed galaxy.datatypes.registry DEBUG 2024-02-23 13:24:48,767 [pN:main.1,p:76310,tN:Thread-2] Loaded converter: CONVERTER_fastq_to_fqtoc0 galaxy.datatypes.registry DEBUG 2024-02-23 13:24:48,768 [pN:main.1,p:76310,tN:Thread-2] Loaded converter: CONVERTER_uncompressed_to_gz galaxy.datatypes.registry DEBUG 2024-02-23 13:24:48,768 [pN:main.1,p:76310,tN:Thread-2] Loaded converter: CONVERTER_gz_to_uncompressed galaxy.datatypes.registry DEBUG 2024-02-23 13:24:48,768 [pN:main.1,p:76310,tN:Thread-2] Loaded converter: CONVERTER_bz2_to_uncompressed galaxy.datatypes.registry DEBUG 2024-02-23 13:24:48,768 [pN:main.1,p:76310,tN:Thread-2] Loaded converter: CONVERTER_fastq_to_fqtoc0 galaxy.datatypes.registry DEBUG 2024-02-23 13:24:48,769 [pN:main.1,p:76310,tN:Thread-2] Loaded converter: CONVERTER_uncompressed_to_gz galaxy.datatypes.registry DEBUG 2024-02-23 13:24:48,769 [pN:main.1,p:76310,tN:Thread-2] Loaded converter: CONVERTER_gz_to_uncompressed galaxy.datatypes.registry DEBUG 2024-02-23 13:24:48,769 [pN:main.1,p:76310,tN:Thread-2] Loaded converter: CONVERTER_bz2_to_uncompressed galaxy.datatypes.registry DEBUG 2024-02-23 13:24:48,769 [pN:main.1,p:76310,tN:Thread-2] Loaded converter: CONVERTER_gff_to_bed_0 galaxy.datatypes.registry DEBUG 2024-02-23 13:24:48,770 [pN:main.1,p:76310,tN:Thread-2] Loaded converter: CONVERTER_gff_to_interval_index_0 galaxy.datatypes.registry DEBUG 2024-02-23 13:24:48,770 [pN:main.1,p:76310,tN:Thread-2] Loaded converter: CONVERTER_bed_gff_or_vcf_to_bigwig_0 galaxy.datatypes.registry DEBUG 2024-02-23 13:24:48,770 [pN:main.1,p:76310,tN:Thread-2] Loaded converter: CONVERTER_gff_to_fli_0 galaxy.datatypes.registry DEBUG 2024-02-23 13:24:48,770 [pN:main.1,p:76310,tN:Thread-2] Loaded converter: CONVERTER_interval_to_bgzip_0 galaxy.datatypes.registry DEBUG 2024-02-23 13:24:48,771 [pN:main.1,p:76310,tN:Thread-2] Loaded converter: CONVERTER_interval_to_tabix_0 galaxy.datatypes.registry DEBUG 2024-02-23 13:24:48,771 [pN:main.1,p:76310,tN:Thread-2] Loaded converter: CONVERTER_uncompressed_to_gz galaxy.datatypes.registry DEBUG 2024-02-23 13:24:48,771 [pN:main.1,p:76310,tN:Thread-2] Loaded converter: CONVERTER_gz_to_uncompressed galaxy.datatypes.registry DEBUG 2024-02-23 13:24:48,771 [pN:main.1,p:76310,tN:Thread-2] Loaded converter: CONVERTER_bz2_to_uncompressed galaxy.datatypes.registry DEBUG 2024-02-23 13:24:48,771 [pN:main.1,p:76310,tN:Thread-2] Loaded converter: CONVERTER_gff_to_interval_index_0 galaxy.datatypes.registry DEBUG 2024-02-23 13:24:48,772 [pN:main.1,p:76310,tN:Thread-2] Loaded converter: CONVERTER_bed_gff_or_vcf_to_bigwig_0 galaxy.datatypes.registry DEBUG 2024-02-23 13:24:48,772 [pN:main.1,p:76310,tN:Thread-2] Loaded converter: CONVERTER_interval_to_bed_0 galaxy.datatypes.registry DEBUG 2024-02-23 13:24:48,772 [pN:main.1,p:76310,tN:Thread-2] Loaded converter: CONVERTER_interval_to_bedstrict_0 galaxy.datatypes.registry DEBUG 2024-02-23 13:24:48,773 [pN:main.1,p:76310,tN:Thread-2] Loaded converter: CONVERTER_interval_to_bed6_0 galaxy.datatypes.registry DEBUG 2024-02-23 13:24:48,773 [pN:main.1,p:76310,tN:Thread-2] Loaded converter: CONVERTER_interval_to_bed12_0 galaxy.datatypes.registry DEBUG 2024-02-23 13:24:48,773 [pN:main.1,p:76310,tN:Thread-2] Loaded converter: CONVERTER_interval_to_bgzip_0 galaxy.datatypes.registry DEBUG 2024-02-23 13:24:48,774 [pN:main.1,p:76310,tN:Thread-2] Loaded converter: CONVERTER_interval_to_tabix_0 galaxy.datatypes.registry DEBUG 2024-02-23 13:24:48,774 [pN:main.1,p:76310,tN:Thread-2] Loaded converter: CONVERTER_interval_to_bigwig_0 galaxy.datatypes.registry DEBUG 2024-02-23 13:24:48,774 [pN:main.1,p:76310,tN:Thread-2] Loaded converter: CONVERTER_picard_interval_list_to_bed6 galaxy.datatypes.registry DEBUG 2024-02-23 13:24:48,774 [pN:main.1,p:76310,tN:Thread-2] Loaded converter: CONVERTER_tar_to_directory galaxy.datatypes.registry DEBUG 2024-02-23 13:24:48,775 [pN:main.1,p:76310,tN:Thread-2] Loaded converter: CONVERTER_uncompressed_to_gz galaxy.datatypes.registry DEBUG 2024-02-23 13:24:48,775 [pN:main.1,p:76310,tN:Thread-2] Loaded converter: CONVERTER_gz_to_uncompressed galaxy.datatypes.registry DEBUG 2024-02-23 13:24:48,775 [pN:main.1,p:76310,tN:Thread-2] Loaded converter: CONVERTER_uncompressed_to_gz galaxy.datatypes.registry DEBUG 2024-02-23 13:24:48,775 [pN:main.1,p:76310,tN:Thread-2] Loaded converter: CONVERTER_gz_to_uncompressed galaxy.datatypes.registry DEBUG 2024-02-23 13:24:48,776 [pN:main.1,p:76310,tN:Thread-2] Loaded converter: CONVERTER_uncompressed_to_gz galaxy.datatypes.registry DEBUG 2024-02-23 13:24:48,776 [pN:main.1,p:76310,tN:Thread-2] Loaded converter: CONVERTER_gz_to_uncompressed galaxy.datatypes.registry DEBUG 2024-02-23 13:24:48,776 [pN:main.1,p:76310,tN:Thread-2] Loaded converter: CONVERTER_maf_to_fasta_0 galaxy.datatypes.registry DEBUG 2024-02-23 13:24:48,776 [pN:main.1,p:76310,tN:Thread-2] Loaded converter: CONVERTER_maf_to_interval_0 galaxy.datatypes.registry DEBUG 2024-02-23 13:24:48,776 [pN:main.1,p:76310,tN:Thread-2] Loaded converter: CONVERTER_interval_to_tabix_0 galaxy.datatypes.registry DEBUG 2024-02-23 13:24:48,776 [pN:main.1,p:76310,tN:Thread-2] Loaded converter: CONVERTER_interval_to_bgzip_0 galaxy.datatypes.registry DEBUG 2024-02-23 13:24:48,777 [pN:main.1,p:76310,tN:Thread-2] Loaded converter: CONVERTER_bed_gff_or_vcf_to_bigwig_0 galaxy.datatypes.registry DEBUG 2024-02-23 13:24:48,777 [pN:main.1,p:76310,tN:Thread-2] Loaded converter: CONVERTER_interval_to_bgzip_0 galaxy.datatypes.registry DEBUG 2024-02-23 13:24:48,777 [pN:main.1,p:76310,tN:Thread-2] Loaded converter: CONVERTER_interval_to_tabix_0 galaxy.datatypes.registry DEBUG 2024-02-23 13:24:48,777 [pN:main.1,p:76310,tN:Thread-2] Loaded converter: CONVERTER_sam_to_unsorted_bam galaxy.datatypes.registry DEBUG 2024-02-23 13:24:48,778 [pN:main.1,p:76310,tN:Thread-2] Loaded converter: CONVERTER_bam_to_coodinate_sorted_bam galaxy.datatypes.registry DEBUG 2024-02-23 13:24:48,778 [pN:main.1,p:76310,tN:Thread-2] Loaded converter: CONVERTER_bam_to_qname_sorted_bam galaxy.datatypes.registry DEBUG 2024-02-23 13:24:48,778 [pN:main.1,p:76310,tN:Thread-2] Loaded converter: CONVERTER_sam_to_bigwig_0 galaxy.datatypes.registry DEBUG 2024-02-23 13:24:48,778 [pN:main.1,p:76310,tN:Thread-2] Loaded converter: tabular_to_dbnsfp galaxy.datatypes.registry DEBUG 2024-02-23 13:24:48,778 [pN:main.1,p:76310,tN:Thread-2] Loaded converter: tabular_to_csv galaxy.datatypes.registry DEBUG 2024-02-23 13:24:48,779 [pN:main.1,p:76310,tN:Thread-2] Loaded converter: CONVERTER_uncompressed_to_gz galaxy.datatypes.registry DEBUG 2024-02-23 13:24:48,779 [pN:main.1,p:76310,tN:Thread-2] Loaded converter: CONVERTER_gz_to_uncompressed galaxy.datatypes.registry DEBUG 2024-02-23 13:24:48,779 [pN:main.1,p:76310,tN:Thread-2] Loaded converter: CONVERTER_interval_to_bgzip_0 galaxy.datatypes.registry DEBUG 2024-02-23 13:24:48,779 [pN:main.1,p:76310,tN:Thread-2] Loaded converter: CONVERTER_vcf_to_vcf_bgzip_0 galaxy.datatypes.registry DEBUG 2024-02-23 13:24:48,780 [pN:main.1,p:76310,tN:Thread-2] Loaded converter: CONVERTER_interval_to_tabix_0 galaxy.datatypes.registry DEBUG 2024-02-23 13:24:48,780 [pN:main.1,p:76310,tN:Thread-2] Loaded converter: CONVERTER_bed_gff_or_vcf_to_bigwig_0 galaxy.datatypes.registry DEBUG 2024-02-23 13:24:48,780 [pN:main.1,p:76310,tN:Thread-2] Loaded converter: CONVERTER_uncompressed_to_gz galaxy.datatypes.registry DEBUG 2024-02-23 13:24:48,781 [pN:main.1,p:76310,tN:Thread-2] Loaded converter: CONVERTER_bcf_uncompressed_to_bcf galaxy.datatypes.registry DEBUG 2024-02-23 13:24:48,781 [pN:main.1,p:76310,tN:Thread-2] Loaded converter: CONVERTER_bcf_uncompressed_to_bcf galaxy.datatypes.registry DEBUG 2024-02-23 13:24:48,781 [pN:main.1,p:76310,tN:Thread-2] Loaded converter: CONVERTER_wig_to_bigwig galaxy.datatypes.registry DEBUG 2024-02-23 13:24:48,781 [pN:main.1,p:76310,tN:Thread-2] Loaded converter: CONVERTER_wiggle_to_interval_0 galaxy.datatypes.registry DEBUG 2024-02-23 13:24:48,781 [pN:main.1,p:76310,tN:Thread-2] Loaded converter: CONVERTER_vcf_bgzip_to_tabix_0 galaxy.datatypes.registry DEBUG 2024-02-23 13:24:48,782 [pN:main.1,p:76310,tN:Thread-2] Loaded converter: CONVERTER_gz_to_uncompressed galaxy.datatypes.registry DEBUG 2024-02-23 13:24:48,782 [pN:main.1,p:76310,tN:Thread-2] Loaded converter: lped2fpedconvert galaxy.datatypes.registry DEBUG 2024-02-23 13:24:48,782 [pN:main.1,p:76310,tN:Thread-2] Loaded converter: lped2pbedconvert galaxy.datatypes.registry DEBUG 2024-02-23 13:24:48,782 [pN:main.1,p:76310,tN:Thread-2] Loaded converter: pbed2lpedconvert galaxy.datatypes.registry DEBUG 2024-02-23 13:24:48,782 [pN:main.1,p:76310,tN:Thread-2] Loaded converter: pbed2ldindepconvert galaxy.datatypes.registry DEBUG 2024-02-23 13:24:48,783 [pN:main.1,p:76310,tN:Thread-2] Loaded converter: CONVERTER_uncompressed_to_gz galaxy.datatypes.registry DEBUG 2024-02-23 13:24:48,783 [pN:main.1,p:76310,tN:Thread-2] Loaded converter: CONVERTER_gz_to_uncompressed galaxy.datatypes.registry DEBUG 2024-02-23 13:24:48,783 [pN:main.1,p:76310,tN:Thread-2] Loaded converter: CONVERTER_biom galaxy.datatypes.registry DEBUG 2024-02-23 13:24:48,783 [pN:main.1,p:76310,tN:Thread-2] Loaded converter: CONVERTER_biom galaxy.datatypes.registry DEBUG 2024-02-23 13:24:48,783 [pN:main.1,p:76310,tN:Thread-2] Loaded converter: CONVERTER_molecules galaxy.datatypes.registry DEBUG 2024-02-23 13:24:48,784 [pN:main.1,p:76310,tN:Thread-2] Loaded converter: CONVERTER_molecules galaxy.datatypes.registry DEBUG 2024-02-23 13:24:48,784 [pN:main.1,p:76310,tN:Thread-2] Loaded converter: CONVERTER_molecules galaxy.datatypes.registry DEBUG 2024-02-23 13:24:48,784 [pN:main.1,p:76310,tN:Thread-2] Loaded converter: CONVERTER_SMILES_to_MOL galaxy.datatypes.registry DEBUG 2024-02-23 13:24:48,784 [pN:main.1,p:76310,tN:Thread-2] Loaded converter: CONVERTER_molecules galaxy.datatypes.registry DEBUG 2024-02-23 13:24:48,784 [pN:main.1,p:76310,tN:Thread-2] Loaded converter: CONVERTER_smiles_to_smiles galaxy.datatypes.registry DEBUG 2024-02-23 13:24:48,785 [pN:main.1,p:76310,tN:Thread-2] Loaded converter: CONVERTER_molecules galaxy.datatypes.registry DEBUG 2024-02-23 13:24:48,785 [pN:main.1,p:76310,tN:Thread-2] Loaded converter: CONVERTER_molecules galaxy.datatypes.registry DEBUG 2024-02-23 13:24:48,785 [pN:main.1,p:76310,tN:Thread-2] Loaded converter: CONVERTER_molecules galaxy.datatypes.registry DEBUG 2024-02-23 13:24:48,785 [pN:main.1,p:76310,tN:Thread-2] Loaded converter: CONVERTER_molecules galaxy.datatypes.registry DEBUG 2024-02-23 13:24:48,785 [pN:main.1,p:76310,tN:Thread-2] Loaded converter: CONVERTER_molecules galaxy.datatypes.registry DEBUG 2024-02-23 13:24:48,786 [pN:main.1,p:76310,tN:Thread-2] Loaded converter: CONVERTER_molecules galaxy.datatypes.registry DEBUG 2024-02-23 13:24:48,786 [pN:main.1,p:76310,tN:Thread-2] Loaded converter: CONVERTER_inchi_to_mol galaxy.datatypes.registry DEBUG 2024-02-23 13:24:48,787 [pN:main.1,p:76310,tN:Thread-2] Loaded converter: CONVERTER_molecules galaxy.datatypes.registry DEBUG 2024-02-23 13:24:48,787 [pN:main.1,p:76310,tN:Thread-2] Loaded converter: CONVERTER_molecules galaxy.datatypes.registry DEBUG 2024-02-23 13:24:48,787 [pN:main.1,p:76310,tN:Thread-2] Loaded converter: CONVERTER_molecules galaxy.datatypes.registry DEBUG 2024-02-23 13:24:48,787 [pN:main.1,p:76310,tN:Thread-2] Loaded converter: CONVERTER_molecules galaxy.datatypes.registry DEBUG 2024-02-23 13:24:48,787 [pN:main.1,p:76310,tN:Thread-2] Loaded converter: CONVERTER_molecules galaxy.datatypes.registry DEBUG 2024-02-23 13:24:48,799 [pN:main.1,p:76310,tN:Thread-2] Loaded converter: CONVERTER_molecules galaxy.datatypes.registry DEBUG 2024-02-23 13:24:48,799 [pN:main.1,p:76310,tN:Thread-2] Loaded converter: CONVERTER_molecules galaxy.datatypes.registry DEBUG 2024-02-23 13:24:48,800 [pN:main.1,p:76310,tN:Thread-2] Loaded converter: CONVERTER_molecules galaxy.datatypes.registry DEBUG 2024-02-23 13:24:48,800 [pN:main.1,p:76310,tN:Thread-2] Loaded converter: CONVERTER_molecules galaxy.datatypes.registry DEBUG 2024-02-23 13:24:48,800 [pN:main.1,p:76310,tN:Thread-2] Loaded converter: CONVERTER_molecules galaxy.datatypes.registry DEBUG 2024-02-23 13:24:48,800 [pN:main.1,p:76310,tN:Thread-2] Loaded converter: CONVERTER_mol2_to_mol galaxy.datatypes.registry DEBUG 2024-02-23 13:24:48,802 [pN:main.1,p:76310,tN:Thread-2] Loaded converter: CONVERTER_molecules galaxy.datatypes.registry DEBUG 2024-02-23 13:24:48,802 [pN:main.1,p:76310,tN:Thread-2] Loaded converter: CONVERTER_cml_to_smiles galaxy.datatypes.registry DEBUG 2024-02-23 13:24:48,802 [pN:main.1,p:76310,tN:Thread-2] Loaded converter: CONVERTER_molecules galaxy.datatypes.registry DEBUG 2024-02-23 13:24:48,802 [pN:main.1,p:76310,tN:Thread-2] Loaded converter: CONVERTER_molecules galaxy.datatypes.registry DEBUG 2024-02-23 13:24:48,803 [pN:main.1,p:76310,tN:Thread-2] Loaded converter: CONVERTER_molecules galaxy.datatypes.registry DEBUG 2024-02-23 13:24:48,803 [pN:main.1,p:76310,tN:Thread-2] Loaded converter: CONVERTER_Pdb_to_Gro_0 galaxy.datatypes.registry DEBUG 2024-02-23 13:24:48,803 [pN:main.1,p:76310,tN:Thread-2] Loaded converter: CONVERTER_mdconvert galaxy.datatypes.registry DEBUG 2024-02-23 13:24:48,803 [pN:main.1,p:76310,tN:Thread-2] Loaded converter: CONVERTER_mdconvert galaxy.datatypes.registry DEBUG 2024-02-23 13:24:48,803 [pN:main.1,p:76310,tN:Thread-2] Loaded converter: CONVERTER_mdconvert galaxy.datatypes.registry DEBUG 2024-02-23 13:24:48,803 [pN:main.1,p:76310,tN:Thread-2] Loaded converter: CONVERTER_mdconvert galaxy.datatypes.registry DEBUG 2024-02-23 13:24:48,804 [pN:main.1,p:76310,tN:Thread-2] Loaded converter: CONVERTER_mdconvert galaxy.datatypes.registry DEBUG 2024-02-23 13:24:48,804 [pN:main.1,p:76310,tN:Thread-2] Loaded converter: CONVERTER_mdconvert galaxy.datatypes.registry DEBUG 2024-02-23 13:24:48,804 [pN:main.1,p:76310,tN:Thread-2] Loaded converter: CONVERTER_Gro_to_Pdb_0 galaxy.datatypes.registry DEBUG 2024-02-23 13:24:48,806 [pN:main.1,p:76310,tN:Thread-2] Loaded converter: CONVERTER_ref_to_seq_taxomony galaxy.datatypes.registry DEBUG 2024-02-23 13:24:48,806 [pN:main.1,p:76310,tN:Thread-2] Loaded converter: CONVERTER_neostorezip_to_neostore galaxy.datatypes.registry DEBUG 2024-02-23 13:24:48,810 [pN:main.1,p:76310,tN:Thread-2] Loaded external metadata tool: __SET_METADATA__ galaxy.tools.special_tools DEBUG 2024-02-23 13:24:48,812 [pN:main.1,p:76310,tN:Thread-2] Loaded history export tool: __EXPORT_HISTORY__ galaxy.tools.special_tools DEBUG 2024-02-23 13:24:48,816 [pN:main.1,p:76310,tN:Thread-2] Loaded history export to uri tool: __EXPORT_HISTORY_TO_URI__ galaxy.tools.special_tools DEBUG 2024-02-23 13:24:48,817 [pN:main.1,p:76310,tN:Thread-2] Loaded history import tool: __IMPORT_HISTORY__ galaxy.tools.special_tools DEBUG 2024-02-23 13:24:48,820 [pN:main.1,p:76310,tN:Thread-2] Loaded data fetch tool: __DATA_FETCH__ galaxy.queue_worker INFO 2024-02-23 13:24:48,820 [pN:main.1,p:76310,tN:Thread-2] Queuing async task rebuild_toolbox_search_index for main.1. galaxy.queue_worker DEBUG 2024-02-23 13:24:48,835 [pN:main.1,p:76310,tN:Thread-2] Toolbox reload (188.007 ms) galaxy.queue_worker INFO 2024-02-23 13:24:48,836 [pN:main.1,p:76310,tN:Thread-2] Queuing async task rebuild_toolbox_search_index for main.1. galaxy.web_stack INFO 2024-02-23 13:24:48,844 [pN:main.1,p:76310,tN:Thread-2] Galaxy server instance 'main.1' is running Serving on http://127.0.0.1:39427 urllib3.connectionpool DEBUG 2024-02-23 13:24:49,264: Starting new HTTP connection (1): 127.0.0.1:39427 urllib3.connectionpool DEBUG 2024-02-23 13:24:49,287: http://127.0.0.1:39427 "GET /api/version HTTP/1.1" 200 49 Galaxy Version: 23.2 bioblend DEBUG 2024-02-23 13:24:49,289: GET - attempts left: 10; retry delay: 10.0 urllib3.connectionpool DEBUG 2024-02-23 13:24:49,291: Starting new HTTP connection (1): localhost:39427 urllib3.connectionpool DEBUG 2024-02-23 13:24:49,317: http://localhost:39427 "GET /api/users HTTP/1.1" 200 2 bioblend DEBUG 2024-02-23 13:24:49,318: GET - attempts left: 10; retry delay: 10.0 urllib3.connectionpool DEBUG 2024-02-23 13:24:49,321: Starting new HTTP connection (1): localhost:39427 urllib3.connectionpool DEBUG 2024-02-23 13:24:49,335: http://localhost:39427 "GET /api/configuration HTTP/1.1" 200 5121 urllib3.connectionpool DEBUG 2024-02-23 13:24:49,337: Starting new HTTP connection (1): localhost:39427 urllib3.connectionpool DEBUG 2024-02-23 13:24:49,450: http://localhost:39427 "POST /api/users HTTP/1.1" 200 276 urllib3.connectionpool DEBUG 2024-02-23 13:24:49,454: Starting new HTTP connection (1): localhost:39427 urllib3.connectionpool DEBUG 2024-02-23 13:24:49,489: http://localhost:39427 "POST /api/users/d18be19a19c462e2/api_key HTTP/1.1" 200 34 urllib3.connectionpool DEBUG 2024-02-23 13:24:49,492: Starting new HTTP connection (1): localhost:39427 urllib3.connectionpool DEBUG 2024-02-23 13:24:49,523: http://localhost:39427 "GET /api/tools/ncbi_fcs_adaptor/test_data?tool_version=0.5.0%2Bgalaxy0 HTTP/1.1" 200 None urllib3.connectionpool DEBUG 2024-02-23 13:24:49,527: Starting new HTTP connection (1): localhost:39427 urllib3.connectionpool DEBUG 2024-02-23 13:24:49,614: http://localhost:39427 "POST /api/histories HTTP/1.1" 200 1000 urllib3.connectionpool DEBUG 2024-02-23 13:24:49,618: Starting new HTTP connection (1): localhost:39427 urllib3.connectionpool DEBUG 2024-02-23 13:24:49,627: http://localhost:39427 "GET /api/tools/ncbi_fcs_adaptor/test_data_path?filename=fcsadaptor_prok_test.fa.gz&tool_version=0.5.0+galaxy0 HTTP/1.1" 200 None urllib3.connectionpool DEBUG 2024-02-23 13:24:49,630: Starting new HTTP connection (1): localhost:39427 urllib3.connectionpool DEBUG 2024-02-23 13:24:49,636: http://localhost:39427 "GET /api/version HTTP/1.1" 200 49 urllib3.connectionpool DEBUG 2024-02-23 13:24:49,639: Starting new HTTP connection (1): localhost:39427 urllib3.connectionpool DEBUG 2024-02-23 13:24:49,662: http://localhost:39427 "GET /api/tools/ncbi_fcs_adaptor/test_data_download?filename=fcsadaptor_prok_test.fa.gz&tool_version=0.5.0+galaxy0 HTTP/1.1" 200 None urllib3.connectionpool DEBUG 2024-02-23 13:24:49,667: Starting new HTTP connection (1): localhost:39427 urllib3.connectionpool DEBUG 2024-02-23 13:24:49,884: http://localhost:39427 "POST /api/tools HTTP/1.1" 200 None urllib3.connectionpool DEBUG 2024-02-23 13:24:49,888: Starting new HTTP connection (1): localhost:39427 multipart.multipart DEBUG 2024-02-23 13:24:49,532 [pN:main.1,p:76310,tN:MainThread] Calling on_field_start with no data multipart.multipart DEBUG 2024-02-23 13:24:49,532 [pN:main.1,p:76310,tN:MainThread] Calling on_field_name with data[0:4] multipart.multipart DEBUG 2024-02-23 13:24:49,532 [pN:main.1,p:76310,tN:MainThread] Calling on_field_data with data[5:63] multipart.multipart DEBUG 2024-02-23 13:24:49,532 [pN:main.1,p:76310,tN:MainThread] Calling on_field_end with no data multipart.multipart DEBUG 2024-02-23 13:24:49,532 [pN:main.1,p:76310,tN:MainThread] Calling on_end with no data galaxy.tools INFO 2024-02-23 13:24:49,706 [pN:main.1,p:76310,tN:WSGI_0] Validated and populated state for tool request (11.250 ms) galaxy.tools.actions.upload DEBUG 2024-02-23 13:24:49,712 [pN:main.1,p:76310,tN:WSGI_0] Persisted uploads (0.123 ms) galaxy.tools.actions.upload DEBUG 2024-02-23 13:24:49,791 [pN:main.1,p:76310,tN:WSGI_0] Checked uploads (78.653 ms) galaxy.tools.actions.upload DEBUG 2024-02-23 13:24:49,794 [pN:main.1,p:76310,tN:WSGI_0] Created upload job (3.491 ms) galaxy.tools.execute DEBUG 2024-02-23 13:24:49,795 [pN:main.1,p:76310,tN:WSGI_0] Tool upload1 created job None (83.248 ms) galaxy.web_stack.handlers INFO 2024-02-23 13:24:49,831 [pN:main.1,p:76310,tN:WSGI_0] (Job[id=1,tool_id=upload1]) Handler '_default_' assigned using 'HANDLER_ASSIGNMENT_METHODS.DB_SKIP_LOCKED' assignment method galaxy.tools.execute DEBUG 2024-02-23 13:24:49,844 [pN:main.1,p:76310,tN:WSGI_0] Created 1 job(s) for tool upload1 request (137.341 ms) galaxy.queue_worker INFO 2024-02-23 13:24:49,860 [pN:main.1,p:76310,tN:Thread-1] Instance 'main.1' received 'rebuild_toolbox_search_index' task, executing now. galaxy.tools.search DEBUG 2024-02-23 13:24:49,860 [pN:main.1,p:76310,tN:Thread-1] Starting to build toolbox index of panel default. galaxy.tools.search DEBUG 2024-02-23 13:24:49,888 [pN:main.1,p:76310,tN:Thread-1] Toolbox index of panel default finished (27.744 ms) galaxy.tools.search DEBUG 2024-02-23 13:24:49,888 [pN:main.1,p:76310,tN:Thread-1] Starting to build toolbox index of panel ontology:edam_operations. galaxy.tools.search DEBUG 2024-02-23 13:24:49,906 [pN:main.1,p:76310,tN:Thread-1] Toolbox index of panel ontology:edam_operations finished (17.556 ms) galaxy.tools.search DEBUG 2024-02-23 13:24:49,906 [pN:main.1,p:76310,tN:Thread-1] Starting to build toolbox index of panel ontology:edam_topics. galaxy.tools.search DEBUG 2024-02-23 13:24:49,911 [pN:main.1,p:76310,tN:Thread-1] Toolbox index of panel ontology:edam_topics finished (4.644 ms) galaxy.queue_worker INFO 2024-02-23 13:24:49,933 [pN:main.1,p:76310,tN:Thread-1] Instance 'main.1' received 'rebuild_toolbox_search_index' task, executing now. galaxy.tools.search DEBUG 2024-02-23 13:24:49,933 [pN:main.1,p:76310,tN:Thread-1] Starting to build toolbox index of panel default. urllib3.connectionpool DEBUG 2024-02-23 13:24:49,980: http://localhost:39427 "GET /api/jobs/d18be19a19c462e2 HTTP/1.1" 200 1043 urllib3.connectionpool DEBUG 2024-02-23 13:24:50,234: Starting new HTTP connection (1): localhost:39427 urllib3.connectionpool DEBUG 2024-02-23 13:24:50,269: http://localhost:39427 "GET /api/jobs/d18be19a19c462e2 HTTP/1.1" 200 1043 urllib3.connectionpool DEBUG 2024-02-23 13:24:50,523: Starting new HTTP connection (1): localhost:39427 urllib3.connectionpool DEBUG 2024-02-23 13:24:50,555: http://localhost:39427 "GET /api/jobs/d18be19a19c462e2 HTTP/1.1" 200 1043 urllib3.connectionpool DEBUG 2024-02-23 13:24:50,809: Starting new HTTP connection (1): localhost:39427 urllib3.connectionpool DEBUG 2024-02-23 13:24:50,882: http://localhost:39427 "GET /api/jobs/d18be19a19c462e2 HTTP/1.1" 200 1043 galaxy.tools.search DEBUG 2024-02-23 13:24:49,983 [pN:main.1,p:76310,tN:Thread-1] Toolbox index of panel default finished (48.967 ms) galaxy.tools.search DEBUG 2024-02-23 13:24:49,983 [pN:main.1,p:76310,tN:Thread-1] Starting to build toolbox index of panel ontology:edam_operations. galaxy.tools.search DEBUG 2024-02-23 13:24:49,988 [pN:main.1,p:76310,tN:Thread-1] Toolbox index of panel ontology:edam_operations finished (5.496 ms) galaxy.tools.search DEBUG 2024-02-23 13:24:49,989 [pN:main.1,p:76310,tN:Thread-1] Starting to build toolbox index of panel ontology:edam_topics. galaxy.tools.search DEBUG 2024-02-23 13:24:49,993 [pN:main.1,p:76310,tN:Thread-1] Toolbox index of panel ontology:edam_topics finished (4.199 ms) galaxy.jobs.mapper DEBUG 2024-02-23 13:24:50,870 [pN:main.1,p:76310,tN:JobHandlerQueue.monitor_thread] (1) Mapped job to destination id: docker_local galaxy.jobs.handler DEBUG 2024-02-23 13:24:50,885 [pN:main.1,p:76310,tN:JobHandlerQueue.monitor_thread] (1) Dispatching to local runner galaxy.jobs DEBUG 2024-02-23 13:24:50,899 [pN:main.1,p:76310,tN:JobHandlerQueue.monitor_thread] (1) Persisting job destination (destination id: docker_local) galaxy.jobs DEBUG 2024-02-23 13:24:50,910 [pN:main.1,p:76310,tN:JobHandlerQueue.monitor_thread] (1) Working directory for job is: /tmp/tmpu7x63f_i/job_working_directory/000/1 galaxy.jobs.runners DEBUG 2024-02-23 13:24:50,917 [pN:main.1,p:76310,tN:JobHandlerQueue.monitor_thread] Job [1] queued (30.885 ms) galaxy.jobs.handler INFO 2024-02-23 13:24:50,928 [pN:main.1,p:76310,tN:JobHandlerQueue.monitor_thread] (1) Job dispatched urllib3.connectionpool DEBUG 2024-02-23 13:24:51,136: Starting new HTTP connection (1): localhost:39427 urllib3.connectionpool DEBUG 2024-02-23 13:24:51,201: http://localhost:39427 "GET /api/jobs/d18be19a19c462e2 HTTP/1.1" 200 1460 urllib3.connectionpool DEBUG 2024-02-23 13:24:51,455: Starting new HTTP connection (1): localhost:39427 urllib3.connectionpool DEBUG 2024-02-23 13:24:51,485: http://localhost:39427 "GET /api/jobs/d18be19a19c462e2 HTTP/1.1" 200 1464 urllib3.connectionpool DEBUG 2024-02-23 13:24:51,739: Starting new HTTP connection (1): localhost:39427 urllib3.connectionpool DEBUG 2024-02-23 13:24:51,770: http://localhost:39427 "GET /api/jobs/d18be19a19c462e2 HTTP/1.1" 200 1464 galaxy.jobs DEBUG 2024-02-23 13:24:51,023 [pN:main.1,p:76310,tN:LocalRunner.work_thread-0] Job wrapper for Job [1] prepared (87.577 ms) galaxy.tool_util.deps.containers INFO 2024-02-23 13:24:51,024 [pN:main.1,p:76310,tN:LocalRunner.work_thread-0] Checking with container resolver [ExplicitContainerResolver[]] found description [None] galaxy.tool_util.deps.containers INFO 2024-02-23 13:24:51,024 [pN:main.1,p:76310,tN:LocalRunner.work_thread-0] Checking with container resolver [CachedMulledDockerContainerResolver[namespace=biocontainers]] found description [None] galaxy.tool_util.deps.containers INFO 2024-02-23 13:24:51,024 [pN:main.1,p:76310,tN:LocalRunner.work_thread-0] Checking with container resolver [CachedMulledDockerContainerResolver[namespace=local]] found description [None] galaxy.tool_util.deps.containers INFO 2024-02-23 13:24:51,024 [pN:main.1,p:76310,tN:LocalRunner.work_thread-0] Checking with container resolver [MulledDockerContainerResolver[namespace=biocontainers]] found description [None] galaxy.tool_util.deps.containers INFO 2024-02-23 13:24:51,024 [pN:main.1,p:76310,tN:LocalRunner.work_thread-0] Checking with container resolver [BuildDockerContainerResolver[namespace=local]] found description [None] galaxy.jobs.command_factory INFO 2024-02-23 13:24:51,052 [pN:main.1,p:76310,tN:LocalRunner.work_thread-0] Built script [/tmp/tmpu7x63f_i/job_working_directory/000/1/tool_script.sh] for tool command [python '/scratch/rico/galaxy/tools/data_source/upload.py' '/scratch/rico/galaxy' '/tmp/tmpu7x63f_i/job_working_directory/000/1/registry.xml' '/tmp/tmpu7x63f_i/job_working_directory/000/1/upload_params.json' '1:/tmp/tmpu7x63f_i/job_working_directory/000/1/outputs/dataset_eec98b5f-f9be-4dc5-96b4-503ed9063d81_files:/tmp/tmpu7x63f_i/job_working_directory/000/1/outputs/dataset_eec98b5f-f9be-4dc5-96b4-503ed9063d81.dat'] galaxy.jobs.runners DEBUG 2024-02-23 13:24:51,107 [pN:main.1,p:76310,tN:LocalRunner.work_thread-0] (1) command is: mkdir -p working outputs configs if [ -d _working ]; then rm -rf working/ outputs/ configs/; cp -R _working working; cp -R _outputs outputs; cp -R _configs configs else cp -R working _working; cp -R outputs _outputs; cp -R configs _configs fi cd working; /bin/bash /tmp/tmpu7x63f_i/job_working_directory/000/1/tool_script.sh > '../outputs/tool_stdout' 2> '../outputs/tool_stderr'; return_code=$?; echo $return_code > /tmp/tmpu7x63f_i/job_working_directory/000/1/galaxy_1.ec; cd '/tmp/tmpu7x63f_i/job_working_directory/000/1'; [ "$GALAXY_VIRTUAL_ENV" = "None" ] && GALAXY_VIRTUAL_ENV="$_GALAXY_VIRTUAL_ENV"; _galaxy_setup_environment True; python metadata/set.py; sh -c "exit $return_code" galaxy.jobs.runners.local DEBUG 2024-02-23 13:24:51,129 [pN:main.1,p:76310,tN:LocalRunner.work_thread-0] (1) executing job script: /tmp/tmpu7x63f_i/job_working_directory/000/1/galaxy_1.sh urllib3.connectionpool DEBUG 2024-02-23 13:24:52,024: Starting new HTTP connection (1): localhost:39427 urllib3.connectionpool DEBUG 2024-02-23 13:24:52,053: http://localhost:39427 "GET /api/jobs/d18be19a19c462e2 HTTP/1.1" 200 1464 urllib3.connectionpool DEBUG 2024-02-23 13:24:52,307: Starting new HTTP connection (1): localhost:39427 urllib3.connectionpool DEBUG 2024-02-23 13:24:52,335: http://localhost:39427 "GET /api/jobs/d18be19a19c462e2 HTTP/1.1" 200 1464 urllib3.connectionpool DEBUG 2024-02-23 13:24:52,589: Starting new HTTP connection (1): localhost:39427 urllib3.connectionpool DEBUG 2024-02-23 13:24:52,612: http://localhost:39427 "GET /api/jobs/d18be19a19c462e2 HTTP/1.1" 200 1464 urllib3.connectionpool DEBUG 2024-02-23 13:24:52,866: Starting new HTTP connection (1): localhost:39427 urllib3.connectionpool DEBUG 2024-02-23 13:24:52,897: http://localhost:39427 "GET /api/jobs/d18be19a19c462e2 HTTP/1.1" 200 1464 urllib3.connectionpool DEBUG 2024-02-23 13:24:53,151: Starting new HTTP connection (1): localhost:39427 urllib3.connectionpool DEBUG 2024-02-23 13:24:53,179: http://localhost:39427 "GET /api/jobs/d18be19a19c462e2 HTTP/1.1" 200 1464 urllib3.connectionpool DEBUG 2024-02-23 13:24:53,433: Starting new HTTP connection (1): localhost:39427 urllib3.connectionpool DEBUG 2024-02-23 13:24:53,459: http://localhost:39427 "GET /api/jobs/d18be19a19c462e2 HTTP/1.1" 200 1464 urllib3.connectionpool DEBUG 2024-02-23 13:24:53,714: Starting new HTTP connection (1): localhost:39427 urllib3.connectionpool DEBUG 2024-02-23 13:24:53,745: http://localhost:39427 "GET /api/jobs/d18be19a19c462e2 HTTP/1.1" 200 1464 urllib3.connectionpool DEBUG 2024-02-23 13:24:53,999: Starting new HTTP connection (1): localhost:39427 urllib3.connectionpool DEBUG 2024-02-23 13:24:54,022: http://localhost:39427 "GET /api/jobs/d18be19a19c462e2 HTTP/1.1" 200 1464 urllib3.connectionpool DEBUG 2024-02-23 13:24:54,276: Starting new HTTP connection (1): localhost:39427 urllib3.connectionpool DEBUG 2024-02-23 13:24:54,307: http://localhost:39427 "GET /api/jobs/d18be19a19c462e2 HTTP/1.1" 200 1464 urllib3.connectionpool DEBUG 2024-02-23 13:24:54,560: Starting new HTTP connection (1): localhost:39427 urllib3.connectionpool DEBUG 2024-02-23 13:24:54,593: http://localhost:39427 "GET /api/jobs/d18be19a19c462e2 HTTP/1.1" 200 1464 urllib3.connectionpool DEBUG 2024-02-23 13:24:54,847: Starting new HTTP connection (1): localhost:39427 urllib3.connectionpool DEBUG 2024-02-23 13:24:54,878: http://localhost:39427 "GET /api/jobs/d18be19a19c462e2 HTTP/1.1" 200 1464 urllib3.connectionpool DEBUG 2024-02-23 13:24:55,132: Starting new HTTP connection (1): localhost:39427 urllib3.connectionpool DEBUG 2024-02-23 13:24:55,165: http://localhost:39427 "GET /api/jobs/d18be19a19c462e2 HTTP/1.1" 200 1464 urllib3.connectionpool DEBUG 2024-02-23 13:24:55,419: Starting new HTTP connection (1): localhost:39427 urllib3.connectionpool DEBUG 2024-02-23 13:24:55,444: http://localhost:39427 "GET /api/jobs/d18be19a19c462e2 HTTP/1.1" 200 1464 urllib3.connectionpool DEBUG 2024-02-23 13:24:55,698: Starting new HTTP connection (1): localhost:39427 urllib3.connectionpool DEBUG 2024-02-23 13:24:55,723: http://localhost:39427 "GET /api/jobs/d18be19a19c462e2 HTTP/1.1" 200 1464 urllib3.connectionpool DEBUG 2024-02-23 13:24:55,977: Starting new HTTP connection (1): localhost:39427 urllib3.connectionpool DEBUG 2024-02-23 13:24:56,004: http://localhost:39427 "GET /api/jobs/d18be19a19c462e2 HTTP/1.1" 200 1464 urllib3.connectionpool DEBUG 2024-02-23 13:24:56,257: Starting new HTTP connection (1): localhost:39427 urllib3.connectionpool DEBUG 2024-02-23 13:24:56,284: http://localhost:39427 "GET /api/jobs/d18be19a19c462e2 HTTP/1.1" 200 1464 urllib3.connectionpool DEBUG 2024-02-23 13:24:56,537: Starting new HTTP connection (1): localhost:39427 urllib3.connectionpool DEBUG 2024-02-23 13:24:56,563: http://localhost:39427 "GET /api/jobs/d18be19a19c462e2 HTTP/1.1" 200 1464 urllib3.connectionpool DEBUG 2024-02-23 13:24:56,817: Starting new HTTP connection (1): localhost:39427 urllib3.connectionpool DEBUG 2024-02-23 13:24:56,888: http://localhost:39427 "GET /api/jobs/d18be19a19c462e2 HTTP/1.1" 200 1464 galaxy.jobs.runners.util.process_groups DEBUG 2024-02-23 13:24:56,804 [pN:main.1,p:76310,tN:LocalRunner.work_thread-0] check_pg(): No process found in process group 76332 galaxy.jobs.runners.local DEBUG 2024-02-23 13:24:56,805 [pN:main.1,p:76310,tN:LocalRunner.work_thread-0] execution finished: /tmp/tmpu7x63f_i/job_working_directory/000/1/galaxy_1.sh galaxy.jobs DEBUG 2024-02-23 13:24:56,843 [pN:main.1,p:76310,tN:LocalRunner.work_thread-0] finish(): Moved /tmp/tmpu7x63f_i/job_working_directory/000/1/outputs/dataset_eec98b5f-f9be-4dc5-96b4-503ed9063d81.dat to /tmp/tmpu7x63f_i/files/e/e/c/dataset_eec98b5f-f9be-4dc5-96b4-503ed9063d81.dat galaxy.model.metadata DEBUG 2024-02-23 13:24:56,857 [pN:main.1,p:76310,tN:LocalRunner.work_thread-0] loading metadata from file for: HistoryDatasetAssociation 1 galaxy.jobs DEBUG 2024-02-23 13:24:56,909 [pN:main.1,p:76310,tN:LocalRunner.work_thread-0] job_wrapper.finish for job 1 executed (79.553 ms) urllib3.connectionpool DEBUG 2024-02-23 13:24:57,142: Starting new HTTP connection (1): localhost:39427 urllib3.connectionpool DEBUG 2024-02-23 13:24:57,174: http://localhost:39427 "GET /api/jobs/d18be19a19c462e2 HTTP/1.1" 200 1454 urllib3.connectionpool DEBUG 2024-02-23 13:24:57,176: Starting new HTTP connection (1): localhost:39427 urllib3.connectionpool DEBUG 2024-02-23 13:24:57,302: http://localhost:39427 "POST /api/tools HTTP/1.1" 200 None urllib3.connectionpool DEBUG 2024-02-23 13:24:57,307: Starting new HTTP connection (1): localhost:39427 urllib3.connectionpool DEBUG 2024-02-23 13:24:57,339: http://localhost:39427 "GET /api/jobs/f7b3fc53f9a1cdab HTTP/1.1" 200 873 urllib3.connectionpool DEBUG 2024-02-23 13:24:57,593: Starting new HTTP connection (1): localhost:39427 urllib3.connectionpool DEBUG 2024-02-23 13:24:57,625: http://localhost:39427 "GET /api/jobs/f7b3fc53f9a1cdab HTTP/1.1" 200 873 urllib3.connectionpool DEBUG 2024-02-23 13:24:57,878: Starting new HTTP connection (1): localhost:39427 urllib3.connectionpool DEBUG 2024-02-23 13:24:57,909: http://localhost:39427 "GET /api/jobs/f7b3fc53f9a1cdab HTTP/1.1" 200 873 galaxy.tools INFO 2024-02-23 13:24:57,214 [pN:main.1,p:76310,tN:WSGI_2] Validated and populated state for tool request (12.825 ms) galaxy.tools.actions INFO 2024-02-23 13:24:57,221 [pN:main.1,p:76310,tN:WSGI_2] Handled output named adaptor_report for tool ncbi_fcs_adaptor (3.467 ms) galaxy.tools.actions INFO 2024-02-23 13:24:57,223 [pN:main.1,p:76310,tN:WSGI_2] Handled output named clean_fasta for tool ncbi_fcs_adaptor (2.550 ms) galaxy.tools.actions INFO 2024-02-23 13:24:57,240 [pN:main.1,p:76310,tN:WSGI_2] Added output datasets to history (16.898 ms) galaxy.tools.actions INFO 2024-02-23 13:24:57,242 [pN:main.1,p:76310,tN:WSGI_2] Setup for job Job[unflushed,tool_id=ncbi_fcs_adaptor] complete, ready to be enqueued (1.769 ms) galaxy.tools.execute DEBUG 2024-02-23 13:24:57,242 [pN:main.1,p:76310,tN:WSGI_2] Tool ncbi_fcs_adaptor created job None (26.970 ms) galaxy.web_stack.handlers INFO 2024-02-23 13:24:57,270 [pN:main.1,p:76310,tN:WSGI_2] (Job[id=2,tool_id=ncbi_fcs_adaptor]) Handler '_default_' assigned using 'HANDLER_ASSIGNMENT_METHODS.DB_SKIP_LOCKED' assignment method galaxy.tools.execute DEBUG 2024-02-23 13:24:57,279 [pN:main.1,p:76310,tN:WSGI_2] Created 1 job(s) for tool ncbi_fcs_adaptor request (64.987 ms) urllib3.connectionpool DEBUG 2024-02-23 13:24:58,161: Starting new HTTP connection (1): localhost:39427 urllib3.connectionpool DEBUG 2024-02-23 13:24:58,240: http://localhost:39427 "GET /api/jobs/f7b3fc53f9a1cdab HTTP/1.1" 200 1001 urllib3.connectionpool DEBUG 2024-02-23 13:24:58,494: Starting new HTTP connection (1): localhost:39427 urllib3.connectionpool DEBUG 2024-02-23 13:24:58,534: http://localhost:39427 "GET /api/jobs/f7b3fc53f9a1cdab HTTP/1.1" 200 1005 urllib3.connectionpool DEBUG 2024-02-23 13:24:58,788: Starting new HTTP connection (1): localhost:39427 urllib3.connectionpool DEBUG 2024-02-23 13:24:58,819: http://localhost:39427 "GET /api/jobs/f7b3fc53f9a1cdab HTTP/1.1" 200 1005 galaxy.jobs.mapper DEBUG 2024-02-23 13:24:58,083 [pN:main.1,p:76310,tN:JobHandlerQueue.monitor_thread] (2) Mapped job to destination id: docker_local galaxy.jobs.handler DEBUG 2024-02-23 13:24:58,085 [pN:main.1,p:76310,tN:JobHandlerQueue.monitor_thread] (2) Dispatching to local runner galaxy.jobs DEBUG 2024-02-23 13:24:58,091 [pN:main.1,p:76310,tN:JobHandlerQueue.monitor_thread] (2) Persisting job destination (destination id: docker_local) galaxy.jobs DEBUG 2024-02-23 13:24:58,096 [pN:main.1,p:76310,tN:JobHandlerQueue.monitor_thread] (2) Working directory for job is: /tmp/tmpu7x63f_i/job_working_directory/000/2 galaxy.jobs.runners DEBUG 2024-02-23 13:24:58,104 [pN:main.1,p:76310,tN:JobHandlerQueue.monitor_thread] Job [2] queued (17.918 ms) galaxy.jobs.handler INFO 2024-02-23 13:24:58,113 [pN:main.1,p:76310,tN:JobHandlerQueue.monitor_thread] (2) Job dispatched galaxy.security.object_wrapper WARNING 2024-02-23 13:24:58,154 [pN:main.1,p:76310,tN:LocalRunner.work_thread-1] Unable to create dynamic subclass SafeStringWrapper__galaxy.model.none_like.None__NoneType__NotImplementedType__Number__SafeStringWrapper__ToolParameterValueWrapper__bool__bytearray__ellipsis for <class 'galaxy.model.none_like.NoneDataset'>, None: type() doesn't support MRO entry resolution; use types.new_class() galaxy.jobs DEBUG 2024-02-23 13:24:58,171 [pN:main.1,p:76310,tN:LocalRunner.work_thread-1] Job wrapper for Job [2] prepared (48.293 ms) galaxy.tool_util.deps.containers INFO 2024-02-23 13:24:58,171 [pN:main.1,p:76310,tN:LocalRunner.work_thread-1] Checking with container resolver [ExplicitContainerResolver[]] found description [ContainerDescription[identifier=ncbi/fcs-adaptor:0.5.0,type=docker]] galaxy.jobs.command_factory INFO 2024-02-23 13:24:58,228 [pN:main.1,p:76310,tN:LocalRunner.work_thread-1] Built script [/tmp/tmpu7x63f_i/job_working_directory/000/2/tool_script.sh] for tool command [/app/fcs/bin/av_screen_x -o "$(pwd)" '--prok' '/tmp/tmpu7x63f_i/files/e/e/c/dataset_eec98b5f-f9be-4dc5-96b4-503ed9063d81.dat'] galaxy.jobs.runners DEBUG 2024-02-23 13:24:58,271 [pN:main.1,p:76310,tN:LocalRunner.work_thread-1] (2) command is: mkdir -p working outputs configs if [ -d _working ]; then rm -rf working/ outputs/ configs/; cp -R _working working; cp -R _outputs outputs; cp -R _configs configs else cp -R working _working; cp -R outputs _outputs; cp -R configs _configs fi cd working; _on_exit() { docker kill f71ddf064bc8471290726ff32293b0f0 &> /dev/null } trap _on_exit EXIT docker inspect ncbi/fcs-adaptor:0.5.0 > /dev/null 2>&1 [ $? -ne 0 ] && docker pull ncbi/fcs-adaptor:0.5.0 > /dev/null 2>&1 docker run -e "GALAXY_SLOTS=$GALAXY_SLOTS" -e "GALAXY_MEMORY_MB=$GALAXY_MEMORY_MB" -e "GALAXY_MEMORY_MB_PER_SLOT=$GALAXY_MEMORY_MB_PER_SLOT" -e "HOME=$HOME" -e "_GALAXY_JOB_HOME_DIR=$_GALAXY_JOB_HOME_DIR" -e "_GALAXY_JOB_TMP_DIR=$_GALAXY_JOB_TMP_DIR" -e "TMPDIR=$TMPDIR" -e "TMP=$TMP" -e "TEMP=$TEMP" --name f71ddf064bc8471290726ff32293b0f0 -v "$_GALAXY_JOB_TMP_DIR:$_GALAXY_JOB_TMP_DIR:rw" -v "$TMPDIR:$TMPDIR:rw" -v "$TMP:$TMP:rw" -v "$TEMP:$TEMP:rw" -v /scratch/rico/galaxy:/scratch/rico/galaxy:ro -v /scratch/rico/galaxytools/tools/ncbi_fcs_adaptor:/scratch/rico/galaxytools/tools/ncbi_fcs_adaptor:ro -v /tmp/tmpu7x63f_i/job_working_directory/000/2:/tmp/tmpu7x63f_i/job_working_directory/000/2:ro -v /tmp/tmpu7x63f_i/job_working_directory/000/2/outputs:/tmp/tmpu7x63f_i/job_working_directory/000/2/outputs:rw -v "$_GALAXY_JOB_HOME_DIR:$_GALAXY_JOB_HOME_DIR:rw" -v /tmp/tmpu7x63f_i/job_working_directory/000/2/working:/tmp/tmpu7x63f_i/job_working_directory/000/2/working:rw -v /tmp/tmpu7x63f_i/files:/tmp/tmpu7x63f_i/files:ro -v /scratch/rico/galaxy/tool-data:/scratch/rico/galaxy/tool-data:ro --cpus ${GALAXY_SLOTS:-1} -w /tmp/tmpu7x63f_i/job_working_directory/000/2/working --rm --user 1028:1028 ncbi/fcs-adaptor:0.5.0 /bin/sh /tmp/tmpu7x63f_i/job_working_directory/000/2/tool_script.sh > '../outputs/tool_stdout' 2> '../outputs/tool_stderr'; return_code=$?; echo $return_code > /tmp/tmpu7x63f_i/job_working_directory/000/2/galaxy_2.ec; if [ -f "/tmp/tmpu7x63f_i/job_working_directory/000/2/working/fcs_adaptor_report.txt" ] ; then cp "/tmp/tmpu7x63f_i/job_working_directory/000/2/working/fcs_adaptor_report.txt" "/tmp/tmpu7x63f_i/job_working_directory/000/2/outputs/dataset_1a2ea823-d7e6-495f-a31e-e8d6621f705c.dat" ; fi; if [ -f "/tmp/tmpu7x63f_i/job_working_directory/000/2/working/cleaned_sequences/"*".dat" ] ; then cp "/tmp/tmpu7x63f_i/job_working_directory/000/2/working/cleaned_sequences/"*".dat" "/tmp/tmpu7x63f_i/job_working_directory/000/2/outputs/dataset_4e39d590-f2e3-4821-87bc-68df5a7106cb.dat" ; fi; cd '/tmp/tmpu7x63f_i/job_working_directory/000/2'; [ "$GALAXY_VIRTUAL_ENV" = "None" ] && GALAXY_VIRTUAL_ENV="$_GALAXY_VIRTUAL_ENV"; _galaxy_setup_environment True; python metadata/set.py; sh -c "exit $return_code" galaxy.jobs.runners.local DEBUG 2024-02-23 13:24:58,294 [pN:main.1,p:76310,tN:LocalRunner.work_thread-1] (2) executing job script: /tmp/tmpu7x63f_i/job_working_directory/000/2/galaxy_2.sh urllib3.connectionpool DEBUG 2024-02-23 13:24:59,072: Starting new HTTP connection (1): localhost:39427 urllib3.connectionpool DEBUG 2024-02-23 13:24:59,102: http://localhost:39427 "GET /api/jobs/f7b3fc53f9a1cdab HTTP/1.1" 200 1005 urllib3.connectionpool DEBUG 2024-02-23 13:24:59,355: Starting new HTTP connection (1): localhost:39427 urllib3.connectionpool DEBUG 2024-02-23 13:24:59,390: http://localhost:39427 "GET /api/jobs/f7b3fc53f9a1cdab HTTP/1.1" 200 1005 urllib3.connectionpool DEBUG 2024-02-23 13:24:59,643: Starting new HTTP connection (1): localhost:39427 urllib3.connectionpool DEBUG 2024-02-23 13:24:59,683: http://localhost:39427 "GET /api/jobs/f7b3fc53f9a1cdab HTTP/1.1" 200 1005 urllib3.connectionpool DEBUG 2024-02-23 13:24:59,936: Starting new HTTP connection (1): localhost:39427 urllib3.connectionpool DEBUG 2024-02-23 13:24:59,967: http://localhost:39427 "GET /api/jobs/f7b3fc53f9a1cdab HTTP/1.1" 200 1005 urllib3.connectionpool DEBUG 2024-02-23 13:25:00,221: Starting new HTTP connection (1): localhost:39427 urllib3.connectionpool DEBUG 2024-02-23 13:25:00,249: http://localhost:39427 "GET /api/jobs/f7b3fc53f9a1cdab HTTP/1.1" 200 1005 urllib3.connectionpool DEBUG 2024-02-23 13:25:00,502: Starting new HTTP connection (1): localhost:39427 urllib3.connectionpool DEBUG 2024-02-23 13:25:00,531: http://localhost:39427 "GET /api/jobs/f7b3fc53f9a1cdab HTTP/1.1" 200 1005 urllib3.connectionpool DEBUG 2024-02-23 13:25:00,785: Starting new HTTP connection (1): localhost:39427 urllib3.connectionpool DEBUG 2024-02-23 13:25:00,815: http://localhost:39427 "GET /api/jobs/f7b3fc53f9a1cdab HTTP/1.1" 200 1005 urllib3.connectionpool DEBUG 2024-02-23 13:25:01,068: Starting new HTTP connection (1): localhost:39427 urllib3.connectionpool DEBUG 2024-02-23 13:25:01,100: http://localhost:39427 "GET /api/jobs/f7b3fc53f9a1cdab HTTP/1.1" 200 1005 urllib3.connectionpool DEBUG 2024-02-23 13:25:01,353: Starting new HTTP connection (1): localhost:39427 urllib3.connectionpool DEBUG 2024-02-23 13:25:01,383: http://localhost:39427 "GET /api/jobs/f7b3fc53f9a1cdab HTTP/1.1" 200 1005 urllib3.connectionpool DEBUG 2024-02-23 13:25:01,636: Starting new HTTP connection (1): localhost:39427 urllib3.connectionpool DEBUG 2024-02-23 13:25:01,667: http://localhost:39427 "GET /api/jobs/f7b3fc53f9a1cdab HTTP/1.1" 200 1005 urllib3.connectionpool DEBUG 2024-02-23 13:25:01,920: Starting new HTTP connection (1): localhost:39427 urllib3.connectionpool DEBUG 2024-02-23 13:25:01,949: http://localhost:39427 "GET /api/jobs/f7b3fc53f9a1cdab HTTP/1.1" 200 1005 urllib3.connectionpool DEBUG 2024-02-23 13:25:02,202: Starting new HTTP connection (1): localhost:39427 urllib3.connectionpool DEBUG 2024-02-23 13:25:02,228: http://localhost:39427 "GET /api/jobs/f7b3fc53f9a1cdab HTTP/1.1" 200 1005 urllib3.connectionpool DEBUG 2024-02-23 13:25:02,482: Starting new HTTP connection (1): localhost:39427 urllib3.connectionpool DEBUG 2024-02-23 13:25:02,521: http://localhost:39427 "GET /api/jobs/f7b3fc53f9a1cdab HTTP/1.1" 200 1005 urllib3.connectionpool DEBUG 2024-02-23 13:25:02,775: Starting new HTTP connection (1): localhost:39427 urllib3.connectionpool DEBUG 2024-02-23 13:25:02,802: http://localhost:39427 "GET /api/jobs/f7b3fc53f9a1cdab HTTP/1.1" 200 1005 urllib3.connectionpool DEBUG 2024-02-23 13:25:03,056: Starting new HTTP connection (1): localhost:39427 urllib3.connectionpool DEBUG 2024-02-23 13:25:03,087: http://localhost:39427 "GET /api/jobs/f7b3fc53f9a1cdab HTTP/1.1" 200 1005 urllib3.connectionpool DEBUG 2024-02-23 13:25:03,341: Starting new HTTP connection (1): localhost:39427 urllib3.connectionpool DEBUG 2024-02-23 13:25:03,372: http://localhost:39427 "GET /api/jobs/f7b3fc53f9a1cdab HTTP/1.1" 200 1005 urllib3.connectionpool DEBUG 2024-02-23 13:25:03,626: Starting new HTTP connection (1): localhost:39427 urllib3.connectionpool DEBUG 2024-02-23 13:25:03,650: http://localhost:39427 "GET /api/jobs/f7b3fc53f9a1cdab HTTP/1.1" 200 1005 urllib3.connectionpool DEBUG 2024-02-23 13:25:03,904: Starting new HTTP connection (1): localhost:39427 urllib3.connectionpool DEBUG 2024-02-23 13:25:03,930: http://localhost:39427 "GET /api/jobs/f7b3fc53f9a1cdab HTTP/1.1" 200 1005 urllib3.connectionpool DEBUG 2024-02-23 13:25:04,184: Starting new HTTP connection (1): localhost:39427 urllib3.connectionpool DEBUG 2024-02-23 13:25:04,215: http://localhost:39427 "GET /api/jobs/f7b3fc53f9a1cdab HTTP/1.1" 200 1005 urllib3.connectionpool DEBUG 2024-02-23 13:25:04,469: Starting new HTTP connection (1): localhost:39427 urllib3.connectionpool DEBUG 2024-02-23 13:25:04,501: http://localhost:39427 "GET /api/jobs/f7b3fc53f9a1cdab HTTP/1.1" 200 1005 urllib3.connectionpool DEBUG 2024-02-23 13:25:04,755: Starting new HTTP connection (1): localhost:39427 urllib3.connectionpool DEBUG 2024-02-23 13:25:04,782: http://localhost:39427 "GET /api/jobs/f7b3fc53f9a1cdab HTTP/1.1" 200 1005 urllib3.connectionpool DEBUG 2024-02-23 13:25:05,036: Starting new HTTP connection (1): localhost:39427 urllib3.connectionpool DEBUG 2024-02-23 13:25:05,066: http://localhost:39427 "GET /api/jobs/f7b3fc53f9a1cdab HTTP/1.1" 200 1005 urllib3.connectionpool DEBUG 2024-02-23 13:25:05,319: Starting new HTTP connection (1): localhost:39427 urllib3.connectionpool DEBUG 2024-02-23 13:25:05,349: http://localhost:39427 "GET /api/jobs/f7b3fc53f9a1cdab HTTP/1.1" 200 1005 urllib3.connectionpool DEBUG 2024-02-23 13:25:05,602: Starting new HTTP connection (1): localhost:39427 urllib3.connectionpool DEBUG 2024-02-23 13:25:05,629: http://localhost:39427 "GET /api/jobs/f7b3fc53f9a1cdab HTTP/1.1" 200 1005 urllib3.connectionpool DEBUG 2024-02-23 13:25:05,883: Starting new HTTP connection (1): localhost:39427 urllib3.connectionpool DEBUG 2024-02-23 13:25:05,910: http://localhost:39427 "GET /api/jobs/f7b3fc53f9a1cdab HTTP/1.1" 200 1005 urllib3.connectionpool DEBUG 2024-02-23 13:25:06,163: Starting new HTTP connection (1): localhost:39427 urllib3.connectionpool DEBUG 2024-02-23 13:25:06,195: http://localhost:39427 "GET /api/jobs/f7b3fc53f9a1cdab HTTP/1.1" 200 1005 urllib3.connectionpool DEBUG 2024-02-23 13:25:06,449: Starting new HTTP connection (1): localhost:39427 urllib3.connectionpool DEBUG 2024-02-23 13:25:06,480: http://localhost:39427 "GET /api/jobs/f7b3fc53f9a1cdab HTTP/1.1" 200 1005 urllib3.connectionpool DEBUG 2024-02-23 13:25:06,733: Starting new HTTP connection (1): localhost:39427 urllib3.connectionpool DEBUG 2024-02-23 13:25:06,770: http://localhost:39427 "GET /api/jobs/f7b3fc53f9a1cdab HTTP/1.1" 200 1005 urllib3.connectionpool DEBUG 2024-02-23 13:25:07,024: Starting new HTTP connection (1): localhost:39427 urllib3.connectionpool DEBUG 2024-02-23 13:25:07,054: http://localhost:39427 "GET /api/jobs/f7b3fc53f9a1cdab HTTP/1.1" 200 1005 urllib3.connectionpool DEBUG 2024-02-23 13:25:07,308: Starting new HTTP connection (1): localhost:39427 urllib3.connectionpool DEBUG 2024-02-23 13:25:07,340: http://localhost:39427 "GET /api/jobs/f7b3fc53f9a1cdab HTTP/1.1" 200 1005 urllib3.connectionpool DEBUG 2024-02-23 13:25:07,594: Starting new HTTP connection (1): localhost:39427 urllib3.connectionpool DEBUG 2024-02-23 13:25:07,624: http://localhost:39427 "GET /api/jobs/f7b3fc53f9a1cdab HTTP/1.1" 200 1005 urllib3.connectionpool DEBUG 2024-02-23 13:25:07,878: Starting new HTTP connection (1): localhost:39427 urllib3.connectionpool DEBUG 2024-02-23 13:25:07,909: http://localhost:39427 "GET /api/jobs/f7b3fc53f9a1cdab HTTP/1.1" 200 1005 urllib3.connectionpool DEBUG 2024-02-23 13:25:08,163: Starting new HTTP connection (1): localhost:39427 urllib3.connectionpool DEBUG 2024-02-23 13:25:08,193: http://localhost:39427 "GET /api/jobs/f7b3fc53f9a1cdab HTTP/1.1" 200 1005 urllib3.connectionpool DEBUG 2024-02-23 13:25:08,447: Starting new HTTP connection (1): localhost:39427 urllib3.connectionpool DEBUG 2024-02-23 13:25:08,478: http://localhost:39427 "GET /api/jobs/f7b3fc53f9a1cdab HTTP/1.1" 200 1005 urllib3.connectionpool DEBUG 2024-02-23 13:25:08,732: Starting new HTTP connection (1): localhost:39427 urllib3.connectionpool DEBUG 2024-02-23 13:25:08,757: http://localhost:39427 "GET /api/jobs/f7b3fc53f9a1cdab HTTP/1.1" 200 1005 urllib3.connectionpool DEBUG 2024-02-23 13:25:09,011: Starting new HTTP connection (1): localhost:39427 urllib3.connectionpool DEBUG 2024-02-23 13:25:09,043: http://localhost:39427 "GET /api/jobs/f7b3fc53f9a1cdab HTTP/1.1" 200 1005 urllib3.connectionpool DEBUG 2024-02-23 13:25:09,297: Starting new HTTP connection (1): localhost:39427 urllib3.connectionpool DEBUG 2024-02-23 13:25:09,332: http://localhost:39427 "GET /api/jobs/f7b3fc53f9a1cdab HTTP/1.1" 200 1005 urllib3.connectionpool DEBUG 2024-02-23 13:25:09,586: Starting new HTTP connection (1): localhost:39427 urllib3.connectionpool DEBUG 2024-02-23 13:25:09,617: http://localhost:39427 "GET /api/jobs/f7b3fc53f9a1cdab HTTP/1.1" 200 1005 urllib3.connectionpool DEBUG 2024-02-23 13:25:09,871: Starting new HTTP connection (1): localhost:39427 urllib3.connectionpool DEBUG 2024-02-23 13:25:09,905: http://localhost:39427 "GET /api/jobs/f7b3fc53f9a1cdab HTTP/1.1" 200 1005 urllib3.connectionpool DEBUG 2024-02-23 13:25:10,159: Starting new HTTP connection (1): localhost:39427 urllib3.connectionpool DEBUG 2024-02-23 13:25:10,191: http://localhost:39427 "GET /api/jobs/f7b3fc53f9a1cdab HTTP/1.1" 200 1005 urllib3.connectionpool DEBUG 2024-02-23 13:25:10,444: Starting new HTTP connection (1): localhost:39427 urllib3.connectionpool DEBUG 2024-02-23 13:25:10,476: http://localhost:39427 "GET /api/jobs/f7b3fc53f9a1cdab HTTP/1.1" 200 1005 urllib3.connectionpool DEBUG 2024-02-23 13:25:10,730: Starting new HTTP connection (1): localhost:39427 urllib3.connectionpool DEBUG 2024-02-23 13:25:10,770: http://localhost:39427 "GET /api/jobs/f7b3fc53f9a1cdab HTTP/1.1" 200 1005 urllib3.connectionpool DEBUG 2024-02-23 13:25:11,024: Starting new HTTP connection (1): localhost:39427 urllib3.connectionpool DEBUG 2024-02-23 13:25:11,054: http://localhost:39427 "GET /api/jobs/f7b3fc53f9a1cdab HTTP/1.1" 200 1005 urllib3.connectionpool DEBUG 2024-02-23 13:25:11,308: Starting new HTTP connection (1): localhost:39427 urllib3.connectionpool DEBUG 2024-02-23 13:25:11,340: http://localhost:39427 "GET /api/jobs/f7b3fc53f9a1cdab HTTP/1.1" 200 1005 urllib3.connectionpool DEBUG 2024-02-23 13:25:11,594: Starting new HTTP connection (1): localhost:39427 urllib3.connectionpool DEBUG 2024-02-23 13:25:11,620: http://localhost:39427 "GET /api/jobs/f7b3fc53f9a1cdab HTTP/1.1" 200 1005 urllib3.connectionpool DEBUG 2024-02-23 13:25:11,874: Starting new HTTP connection (1): localhost:39427 urllib3.connectionpool DEBUG 2024-02-23 13:25:11,901: http://localhost:39427 "GET /api/jobs/f7b3fc53f9a1cdab HTTP/1.1" 200 1005 urllib3.connectionpool DEBUG 2024-02-23 13:25:12,155: Starting new HTTP connection (1): localhost:39427 urllib3.connectionpool DEBUG 2024-02-23 13:25:12,190: http://localhost:39427 "GET /api/jobs/f7b3fc53f9a1cdab HTTP/1.1" 200 1005 urllib3.connectionpool DEBUG 2024-02-23 13:25:12,444: Starting new HTTP connection (1): localhost:39427 urllib3.connectionpool DEBUG 2024-02-23 13:25:12,471: http://localhost:39427 "GET /api/jobs/f7b3fc53f9a1cdab HTTP/1.1" 200 1005 urllib3.connectionpool DEBUG 2024-02-23 13:25:12,724: Starting new HTTP connection (1): localhost:39427 urllib3.connectionpool DEBUG 2024-02-23 13:25:12,751: http://localhost:39427 "GET /api/jobs/f7b3fc53f9a1cdab HTTP/1.1" 200 1005 urllib3.connectionpool DEBUG 2024-02-23 13:25:13,004: Starting new HTTP connection (1): localhost:39427 urllib3.connectionpool DEBUG 2024-02-23 13:25:13,031: http://localhost:39427 "GET /api/jobs/f7b3fc53f9a1cdab HTTP/1.1" 200 1005 urllib3.connectionpool DEBUG 2024-02-23 13:25:13,285: Starting new HTTP connection (1): localhost:39427 urllib3.connectionpool DEBUG 2024-02-23 13:25:13,310: http://localhost:39427 "GET /api/jobs/f7b3fc53f9a1cdab HTTP/1.1" 200 1005 urllib3.connectionpool DEBUG 2024-02-23 13:25:13,564: Starting new HTTP connection (1): localhost:39427 urllib3.connectionpool DEBUG 2024-02-23 13:25:13,590: http://localhost:39427 "GET /api/jobs/f7b3fc53f9a1cdab HTTP/1.1" 200 1005 urllib3.connectionpool DEBUG 2024-02-23 13:25:13,844: Starting new HTTP connection (1): localhost:39427 urllib3.connectionpool DEBUG 2024-02-23 13:25:13,876: http://localhost:39427 "GET /api/jobs/f7b3fc53f9a1cdab HTTP/1.1" 200 1005 urllib3.connectionpool DEBUG 2024-02-23 13:25:14,130: Starting new HTTP connection (1): localhost:39427 urllib3.connectionpool DEBUG 2024-02-23 13:25:14,155: http://localhost:39427 "GET /api/jobs/f7b3fc53f9a1cdab HTTP/1.1" 200 1005 urllib3.connectionpool DEBUG 2024-02-23 13:25:14,409: Starting new HTTP connection (1): localhost:39427 urllib3.connectionpool DEBUG 2024-02-23 13:25:14,448: http://localhost:39427 "GET /api/jobs/f7b3fc53f9a1cdab HTTP/1.1" 200 1005 urllib3.connectionpool DEBUG 2024-02-23 13:25:14,701: Starting new HTTP connection (1): localhost:39427 urllib3.connectionpool DEBUG 2024-02-23 13:25:14,729: http://localhost:39427 "GET /api/jobs/f7b3fc53f9a1cdab HTTP/1.1" 200 1005 urllib3.connectionpool DEBUG 2024-02-23 13:25:14,982: Starting new HTTP connection (1): localhost:39427 urllib3.connectionpool DEBUG 2024-02-23 13:25:15,012: http://localhost:39427 "GET /api/jobs/f7b3fc53f9a1cdab HTTP/1.1" 200 1005 urllib3.connectionpool DEBUG 2024-02-23 13:25:15,265: Starting new HTTP connection (1): localhost:39427 urllib3.connectionpool DEBUG 2024-02-23 13:25:15,290: http://localhost:39427 "GET /api/jobs/f7b3fc53f9a1cdab HTTP/1.1" 200 1005 urllib3.connectionpool DEBUG 2024-02-23 13:25:15,544: Starting new HTTP connection (1): localhost:39427 urllib3.connectionpool DEBUG 2024-02-23 13:25:15,570: http://localhost:39427 "GET /api/jobs/f7b3fc53f9a1cdab HTTP/1.1" 200 1005 urllib3.connectionpool DEBUG 2024-02-23 13:25:15,824: Starting new HTTP connection (1): localhost:39427 urllib3.connectionpool DEBUG 2024-02-23 13:25:15,848: http://localhost:39427 "GET /api/jobs/f7b3fc53f9a1cdab HTTP/1.1" 200 1005 urllib3.connectionpool DEBUG 2024-02-23 13:25:16,102: Starting new HTTP connection (1): localhost:39427 urllib3.connectionpool DEBUG 2024-02-23 13:25:16,128: http://localhost:39427 "GET /api/jobs/f7b3fc53f9a1cdab HTTP/1.1" 200 1005 urllib3.connectionpool DEBUG 2024-02-23 13:25:16,382: Starting new HTTP connection (1): localhost:39427 urllib3.connectionpool DEBUG 2024-02-23 13:25:16,407: http://localhost:39427 "GET /api/jobs/f7b3fc53f9a1cdab HTTP/1.1" 200 1005 urllib3.connectionpool DEBUG 2024-02-23 13:25:16,660: Starting new HTTP connection (1): localhost:39427 urllib3.connectionpool DEBUG 2024-02-23 13:25:16,685: http://localhost:39427 "GET /api/jobs/f7b3fc53f9a1cdab HTTP/1.1" 200 1005 urllib3.connectionpool DEBUG 2024-02-23 13:25:16,939: Starting new HTTP connection (1): localhost:39427 urllib3.connectionpool DEBUG 2024-02-23 13:25:16,965: http://localhost:39427 "GET /api/jobs/f7b3fc53f9a1cdab HTTP/1.1" 200 1005 urllib3.connectionpool DEBUG 2024-02-23 13:25:17,219: Starting new HTTP connection (1): localhost:39427 urllib3.connectionpool DEBUG 2024-02-23 13:25:17,247: http://localhost:39427 "GET /api/jobs/f7b3fc53f9a1cdab HTTP/1.1" 200 1005 urllib3.connectionpool DEBUG 2024-02-23 13:25:17,499: Starting new HTTP connection (1): localhost:39427 urllib3.connectionpool DEBUG 2024-02-23 13:25:17,522: http://localhost:39427 "GET /api/jobs/f7b3fc53f9a1cdab HTTP/1.1" 200 1005 urllib3.connectionpool DEBUG 2024-02-23 13:25:17,775: Starting new HTTP connection (1): localhost:39427 urllib3.connectionpool DEBUG 2024-02-23 13:25:17,804: http://localhost:39427 "GET /api/jobs/f7b3fc53f9a1cdab HTTP/1.1" 200 1005 urllib3.connectionpool DEBUG 2024-02-23 13:25:18,057: Starting new HTTP connection (1): localhost:39427 urllib3.connectionpool DEBUG 2024-02-23 13:25:18,087: http://localhost:39427 "GET /api/jobs/f7b3fc53f9a1cdab HTTP/1.1" 200 1005 urllib3.connectionpool DEBUG 2024-02-23 13:25:18,340: Starting new HTTP connection (1): localhost:39427 urllib3.connectionpool DEBUG 2024-02-23 13:25:18,367: http://localhost:39427 "GET /api/jobs/f7b3fc53f9a1cdab HTTP/1.1" 200 1005 urllib3.connectionpool DEBUG 2024-02-23 13:25:18,621: Starting new HTTP connection (1): localhost:39427 urllib3.connectionpool DEBUG 2024-02-23 13:25:18,650: http://localhost:39427 "GET /api/jobs/f7b3fc53f9a1cdab HTTP/1.1" 200 1005 urllib3.connectionpool DEBUG 2024-02-23 13:25:18,903: Starting new HTTP connection (1): localhost:39427 urllib3.connectionpool DEBUG 2024-02-23 13:25:18,932: http://localhost:39427 "GET /api/jobs/f7b3fc53f9a1cdab HTTP/1.1" 200 1005 urllib3.connectionpool DEBUG 2024-02-23 13:25:19,185: Starting new HTTP connection (1): localhost:39427 urllib3.connectionpool DEBUG 2024-02-23 13:25:19,222: http://localhost:39427 "GET /api/jobs/f7b3fc53f9a1cdab HTTP/1.1" 200 1005 urllib3.connectionpool DEBUG 2024-02-23 13:25:19,475: Starting new HTTP connection (1): localhost:39427 urllib3.connectionpool DEBUG 2024-02-23 13:25:19,504: http://localhost:39427 "GET /api/jobs/f7b3fc53f9a1cdab HTTP/1.1" 200 1005 urllib3.connectionpool DEBUG 2024-02-23 13:25:19,758: Starting new HTTP connection (1): localhost:39427 urllib3.connectionpool DEBUG 2024-02-23 13:25:19,788: http://localhost:39427 "GET /api/jobs/f7b3fc53f9a1cdab HTTP/1.1" 200 1005 urllib3.connectionpool DEBUG 2024-02-23 13:25:20,041: Starting new HTTP connection (1): localhost:39427 urllib3.connectionpool DEBUG 2024-02-23 13:25:20,068: http://localhost:39427 "GET /api/jobs/f7b3fc53f9a1cdab HTTP/1.1" 200 1005 urllib3.connectionpool DEBUG 2024-02-23 13:25:20,322: Starting new HTTP connection (1): localhost:39427 urllib3.connectionpool DEBUG 2024-02-23 13:25:20,352: http://localhost:39427 "GET /api/jobs/f7b3fc53f9a1cdab HTTP/1.1" 200 1005 urllib3.connectionpool DEBUG 2024-02-23 13:25:20,605: Starting new HTTP connection (1): localhost:39427 urllib3.connectionpool DEBUG 2024-02-23 13:25:20,636: http://localhost:39427 "GET /api/jobs/f7b3fc53f9a1cdab HTTP/1.1" 200 1005 urllib3.connectionpool DEBUG 2024-02-23 13:25:20,889: Starting new HTTP connection (1): localhost:39427 urllib3.connectionpool DEBUG 2024-02-23 13:25:20,921: http://localhost:39427 "GET /api/jobs/f7b3fc53f9a1cdab HTTP/1.1" 200 1005 urllib3.connectionpool DEBUG 2024-02-23 13:25:21,174: Starting new HTTP connection (1): localhost:39427 urllib3.connectionpool DEBUG 2024-02-23 13:25:21,203: http://localhost:39427 "GET /api/jobs/f7b3fc53f9a1cdab HTTP/1.1" 200 1005 urllib3.connectionpool DEBUG 2024-02-23 13:25:21,456: Starting new HTTP connection (1): localhost:39427 urllib3.connectionpool DEBUG 2024-02-23 13:25:21,486: http://localhost:39427 "GET /api/jobs/f7b3fc53f9a1cdab HTTP/1.1" 200 1005 urllib3.connectionpool DEBUG 2024-02-23 13:25:21,739: Starting new HTTP connection (1): localhost:39427 urllib3.connectionpool DEBUG 2024-02-23 13:25:21,768: http://localhost:39427 "GET /api/jobs/f7b3fc53f9a1cdab HTTP/1.1" 200 1005 urllib3.connectionpool DEBUG 2024-02-23 13:25:22,020: Starting new HTTP connection (1): localhost:39427 urllib3.connectionpool DEBUG 2024-02-23 13:25:22,048: http://localhost:39427 "GET /api/jobs/f7b3fc53f9a1cdab HTTP/1.1" 200 1005 urllib3.connectionpool DEBUG 2024-02-23 13:25:22,302: Starting new HTTP connection (1): localhost:39427 urllib3.connectionpool DEBUG 2024-02-23 13:25:22,332: http://localhost:39427 "GET /api/jobs/f7b3fc53f9a1cdab HTTP/1.1" 200 1005 urllib3.connectionpool DEBUG 2024-02-23 13:25:22,585: Starting new HTTP connection (1): localhost:39427 urllib3.connectionpool DEBUG 2024-02-23 13:25:22,626: http://localhost:39427 "GET /api/jobs/f7b3fc53f9a1cdab HTTP/1.1" 200 1005 urllib3.connectionpool DEBUG 2024-02-23 13:25:22,879: Starting new HTTP connection (1): localhost:39427 urllib3.connectionpool DEBUG 2024-02-23 13:25:22,911: http://localhost:39427 "GET /api/jobs/f7b3fc53f9a1cdab HTTP/1.1" 200 1005 urllib3.connectionpool DEBUG 2024-02-23 13:25:23,163: Starting new HTTP connection (1): localhost:39427 urllib3.connectionpool DEBUG 2024-02-23 13:25:23,191: http://localhost:39427 "GET /api/jobs/f7b3fc53f9a1cdab HTTP/1.1" 200 1005 urllib3.connectionpool DEBUG 2024-02-23 13:25:23,444: Starting new HTTP connection (1): localhost:39427 urllib3.connectionpool DEBUG 2024-02-23 13:25:23,472: http://localhost:39427 "GET /api/jobs/f7b3fc53f9a1cdab HTTP/1.1" 200 1005 urllib3.connectionpool DEBUG 2024-02-23 13:25:23,726: Starting new HTTP connection (1): localhost:39427 urllib3.connectionpool DEBUG 2024-02-23 13:25:23,755: http://localhost:39427 "GET /api/jobs/f7b3fc53f9a1cdab HTTP/1.1" 200 1005 urllib3.connectionpool DEBUG 2024-02-23 13:25:24,009: Starting new HTTP connection (1): localhost:39427 urllib3.connectionpool DEBUG 2024-02-23 13:25:24,037: http://localhost:39427 "GET /api/jobs/f7b3fc53f9a1cdab HTTP/1.1" 200 1005 urllib3.connectionpool DEBUG 2024-02-23 13:25:24,290: Starting new HTTP connection (1): localhost:39427 urllib3.connectionpool DEBUG 2024-02-23 13:25:24,320: http://localhost:39427 "GET /api/jobs/f7b3fc53f9a1cdab HTTP/1.1" 200 1005 urllib3.connectionpool DEBUG 2024-02-23 13:25:24,573: Starting new HTTP connection (1): localhost:39427 urllib3.connectionpool DEBUG 2024-02-23 13:25:24,604: http://localhost:39427 "GET /api/jobs/f7b3fc53f9a1cdab HTTP/1.1" 200 1005 urllib3.connectionpool DEBUG 2024-02-23 13:25:24,857: Starting new HTTP connection (1): localhost:39427 urllib3.connectionpool DEBUG 2024-02-23 13:25:24,886: http://localhost:39427 "GET /api/jobs/f7b3fc53f9a1cdab HTTP/1.1" 200 1005 urllib3.connectionpool DEBUG 2024-02-23 13:25:25,139: Starting new HTTP connection (1): localhost:39427 urllib3.connectionpool DEBUG 2024-02-23 13:25:25,179: http://localhost:39427 "GET /api/jobs/f7b3fc53f9a1cdab HTTP/1.1" 200 1005 urllib3.connectionpool DEBUG 2024-02-23 13:25:25,433: Starting new HTTP connection (1): localhost:39427 urllib3.connectionpool DEBUG 2024-02-23 13:25:25,461: http://localhost:39427 "GET /api/jobs/f7b3fc53f9a1cdab HTTP/1.1" 200 1005 urllib3.connectionpool DEBUG 2024-02-23 13:25:25,714: Starting new HTTP connection (1): localhost:39427 urllib3.connectionpool DEBUG 2024-02-23 13:25:25,743: http://localhost:39427 "GET /api/jobs/f7b3fc53f9a1cdab HTTP/1.1" 200 1005 urllib3.connectionpool DEBUG 2024-02-23 13:25:25,996: Starting new HTTP connection (1): localhost:39427 urllib3.connectionpool DEBUG 2024-02-23 13:25:26,026: http://localhost:39427 "GET /api/jobs/f7b3fc53f9a1cdab HTTP/1.1" 200 1005 urllib3.connectionpool DEBUG 2024-02-23 13:25:26,280: Starting new HTTP connection (1): localhost:39427 urllib3.connectionpool DEBUG 2024-02-23 13:25:26,309: http://localhost:39427 "GET /api/jobs/f7b3fc53f9a1cdab HTTP/1.1" 200 1005 urllib3.connectionpool DEBUG 2024-02-23 13:25:26,563: Starting new HTTP connection (1): localhost:39427 urllib3.connectionpool DEBUG 2024-02-23 13:25:26,593: http://localhost:39427 "GET /api/jobs/f7b3fc53f9a1cdab HTTP/1.1" 200 1005 urllib3.connectionpool DEBUG 2024-02-23 13:25:26,846: Starting new HTTP connection (1): localhost:39427 urllib3.connectionpool DEBUG 2024-02-23 13:25:26,877: http://localhost:39427 "GET /api/jobs/f7b3fc53f9a1cdab HTTP/1.1" 200 1005 urllib3.connectionpool DEBUG 2024-02-23 13:25:27,135: Starting new HTTP connection (1): localhost:39427 urllib3.connectionpool DEBUG 2024-02-23 13:25:27,163: http://localhost:39427 "GET /api/jobs/f7b3fc53f9a1cdab HTTP/1.1" 200 1005 urllib3.connectionpool DEBUG 2024-02-23 13:25:27,416: Starting new HTTP connection (1): localhost:39427 urllib3.connectionpool DEBUG 2024-02-23 13:25:27,446: http://localhost:39427 "GET /api/jobs/f7b3fc53f9a1cdab HTTP/1.1" 200 1005 urllib3.connectionpool DEBUG 2024-02-23 13:25:27,700: Starting new HTTP connection (1): localhost:39427 urllib3.connectionpool DEBUG 2024-02-23 13:25:27,740: http://localhost:39427 "GET /api/jobs/f7b3fc53f9a1cdab HTTP/1.1" 200 1005 urllib3.connectionpool DEBUG 2024-02-23 13:25:27,993: Starting new HTTP connection (1): localhost:39427 urllib3.connectionpool DEBUG 2024-02-23 13:25:28,027: http://localhost:39427 "GET /api/jobs/f7b3fc53f9a1cdab HTTP/1.1" 200 1005 urllib3.connectionpool DEBUG 2024-02-23 13:25:28,280: Starting new HTTP connection (1): localhost:39427 urllib3.connectionpool DEBUG 2024-02-23 13:25:28,309: http://localhost:39427 "GET /api/jobs/f7b3fc53f9a1cdab HTTP/1.1" 200 1005 urllib3.connectionpool DEBUG 2024-02-23 13:25:28,562: Starting new HTTP connection (1): localhost:39427 urllib3.connectionpool DEBUG 2024-02-23 13:25:28,591: http://localhost:39427 "GET /api/jobs/f7b3fc53f9a1cdab HTTP/1.1" 200 1005 urllib3.connectionpool DEBUG 2024-02-23 13:25:28,845: Starting new HTTP connection (1): localhost:39427 urllib3.connectionpool DEBUG 2024-02-23 13:25:28,875: http://localhost:39427 "GET /api/jobs/f7b3fc53f9a1cdab HTTP/1.1" 200 1005 urllib3.connectionpool DEBUG 2024-02-23 13:25:29,128: Starting new HTTP connection (1): localhost:39427 urllib3.connectionpool DEBUG 2024-02-23 13:25:29,161: http://localhost:39427 "GET /api/jobs/f7b3fc53f9a1cdab HTTP/1.1" 200 1005 urllib3.connectionpool DEBUG 2024-02-23 13:25:29,415: Starting new HTTP connection (1): localhost:39427 urllib3.connectionpool DEBUG 2024-02-23 13:25:29,447: http://localhost:39427 "GET /api/jobs/f7b3fc53f9a1cdab HTTP/1.1" 200 1005 urllib3.connectionpool DEBUG 2024-02-23 13:25:29,700: Starting new HTTP connection (1): localhost:39427 urllib3.connectionpool DEBUG 2024-02-23 13:25:29,730: http://localhost:39427 "GET /api/jobs/f7b3fc53f9a1cdab HTTP/1.1" 200 1005 urllib3.connectionpool DEBUG 2024-02-23 13:25:29,984: Starting new HTTP connection (1): localhost:39427 urllib3.connectionpool DEBUG 2024-02-23 13:25:30,015: http://localhost:39427 "GET /api/jobs/f7b3fc53f9a1cdab HTTP/1.1" 200 1005 urllib3.connectionpool DEBUG 2024-02-23 13:25:30,268: Starting new HTTP connection (1): localhost:39427 urllib3.connectionpool DEBUG 2024-02-23 13:25:30,301: http://localhost:39427 "GET /api/jobs/f7b3fc53f9a1cdab HTTP/1.1" 200 1005 urllib3.connectionpool DEBUG 2024-02-23 13:25:30,555: Starting new HTTP connection (1): localhost:39427 urllib3.connectionpool DEBUG 2024-02-23 13:25:30,588: http://localhost:39427 "GET /api/jobs/f7b3fc53f9a1cdab HTTP/1.1" 200 1005 urllib3.connectionpool DEBUG 2024-02-23 13:25:30,842: Starting new HTTP connection (1): localhost:39427 urllib3.connectionpool DEBUG 2024-02-23 13:25:30,874: http://localhost:39427 "GET /api/jobs/f7b3fc53f9a1cdab HTTP/1.1" 200 1005 urllib3.connectionpool DEBUG 2024-02-23 13:25:31,127: Starting new HTTP connection (1): localhost:39427 urllib3.connectionpool DEBUG 2024-02-23 13:25:31,158: http://localhost:39427 "GET /api/jobs/f7b3fc53f9a1cdab HTTP/1.1" 200 1005 urllib3.connectionpool DEBUG 2024-02-23 13:25:31,412: Starting new HTTP connection (1): localhost:39427 urllib3.connectionpool DEBUG 2024-02-23 13:25:31,445: http://localhost:39427 "GET /api/jobs/f7b3fc53f9a1cdab HTTP/1.1" 200 1005 urllib3.connectionpool DEBUG 2024-02-23 13:25:31,698: Starting new HTTP connection (1): localhost:39427 urllib3.connectionpool DEBUG 2024-02-23 13:25:31,730: http://localhost:39427 "GET /api/jobs/f7b3fc53f9a1cdab HTTP/1.1" 200 1005 urllib3.connectionpool DEBUG 2024-02-23 13:25:31,984: Starting new HTTP connection (1): localhost:39427 urllib3.connectionpool DEBUG 2024-02-23 13:25:32,016: http://localhost:39427 "GET /api/jobs/f7b3fc53f9a1cdab HTTP/1.1" 200 1005 urllib3.connectionpool DEBUG 2024-02-23 13:25:32,270: Starting new HTTP connection (1): localhost:39427 urllib3.connectionpool DEBUG 2024-02-23 13:25:32,300: http://localhost:39427 "GET /api/jobs/f7b3fc53f9a1cdab HTTP/1.1" 200 1005 urllib3.connectionpool DEBUG 2024-02-23 13:25:32,554: Starting new HTTP connection (1): localhost:39427 urllib3.connectionpool DEBUG 2024-02-23 13:25:32,585: http://localhost:39427 "GET /api/jobs/f7b3fc53f9a1cdab HTTP/1.1" 200 1005 urllib3.connectionpool DEBUG 2024-02-23 13:25:32,838: Starting new HTTP connection (1): localhost:39427 urllib3.connectionpool DEBUG 2024-02-23 13:25:32,869: http://localhost:39427 "GET /api/jobs/f7b3fc53f9a1cdab HTTP/1.1" 200 1005 urllib3.connectionpool DEBUG 2024-02-23 13:25:33,123: Starting new HTTP connection (1): localhost:39427 urllib3.connectionpool DEBUG 2024-02-23 13:25:33,153: http://localhost:39427 "GET /api/jobs/f7b3fc53f9a1cdab HTTP/1.1" 200 1005 urllib3.connectionpool DEBUG 2024-02-23 13:25:33,407: Starting new HTTP connection (1): localhost:39427 urllib3.connectionpool DEBUG 2024-02-23 13:25:33,458: http://localhost:39427 "GET /api/jobs/f7b3fc53f9a1cdab HTTP/1.1" 200 1005 urllib3.connectionpool DEBUG 2024-02-23 13:25:33,712: Starting new HTTP connection (1): localhost:39427 urllib3.connectionpool DEBUG 2024-02-23 13:25:33,744: http://localhost:39427 "GET /api/jobs/f7b3fc53f9a1cdab HTTP/1.1" 200 1005 urllib3.connectionpool DEBUG 2024-02-23 13:25:33,998: Starting new HTTP connection (1): localhost:39427 urllib3.connectionpool DEBUG 2024-02-23 13:25:34,029: http://localhost:39427 "GET /api/jobs/f7b3fc53f9a1cdab HTTP/1.1" 200 1005 urllib3.connectionpool DEBUG 2024-02-23 13:25:34,282: Starting new HTTP connection (1): localhost:39427 urllib3.connectionpool DEBUG 2024-02-23 13:25:34,313: http://localhost:39427 "GET /api/jobs/f7b3fc53f9a1cdab HTTP/1.1" 200 1005 urllib3.connectionpool DEBUG 2024-02-23 13:25:34,567: Starting new HTTP connection (1): localhost:39427 urllib3.connectionpool DEBUG 2024-02-23 13:25:34,602: http://localhost:39427 "GET /api/jobs/f7b3fc53f9a1cdab HTTP/1.1" 200 1005 urllib3.connectionpool DEBUG 2024-02-23 13:25:34,855: Starting new HTTP connection (1): localhost:39427 urllib3.connectionpool DEBUG 2024-02-23 13:25:34,900: http://localhost:39427 "GET /api/jobs/f7b3fc53f9a1cdab HTTP/1.1" 200 1005 urllib3.connectionpool DEBUG 2024-02-23 13:25:35,153: Starting new HTTP connection (1): localhost:39427 urllib3.connectionpool DEBUG 2024-02-23 13:25:35,185: http://localhost:39427 "GET /api/jobs/f7b3fc53f9a1cdab HTTP/1.1" 200 1005 urllib3.connectionpool DEBUG 2024-02-23 13:25:35,438: Starting new HTTP connection (1): localhost:39427 urllib3.connectionpool DEBUG 2024-02-23 13:25:35,471: http://localhost:39427 "GET /api/jobs/f7b3fc53f9a1cdab HTTP/1.1" 200 1005 urllib3.connectionpool DEBUG 2024-02-23 13:25:35,724: Starting new HTTP connection (1): localhost:39427 urllib3.connectionpool DEBUG 2024-02-23 13:25:35,762: http://localhost:39427 "GET /api/jobs/f7b3fc53f9a1cdab HTTP/1.1" 200 1005 urllib3.connectionpool DEBUG 2024-02-23 13:25:36,015: Starting new HTTP connection (1): localhost:39427 urllib3.connectionpool DEBUG 2024-02-23 13:25:36,050: http://localhost:39427 "GET /api/jobs/f7b3fc53f9a1cdab HTTP/1.1" 200 1005 urllib3.connectionpool DEBUG 2024-02-23 13:25:36,303: Starting new HTTP connection (1): localhost:39427 urllib3.connectionpool DEBUG 2024-02-23 13:25:36,336: http://localhost:39427 "GET /api/jobs/f7b3fc53f9a1cdab HTTP/1.1" 200 1005 urllib3.connectionpool DEBUG 2024-02-23 13:25:36,589: Starting new HTTP connection (1): localhost:39427 urllib3.connectionpool DEBUG 2024-02-23 13:25:36,631: http://localhost:39427 "GET /api/jobs/f7b3fc53f9a1cdab HTTP/1.1" 200 1005 urllib3.connectionpool DEBUG 2024-02-23 13:25:36,884: Starting new HTTP connection (1): localhost:39427 urllib3.connectionpool DEBUG 2024-02-23 13:25:36,918: http://localhost:39427 "GET /api/jobs/f7b3fc53f9a1cdab HTTP/1.1" 200 1005 urllib3.connectionpool DEBUG 2024-02-23 13:25:37,172: Starting new HTTP connection (1): localhost:39427 urllib3.connectionpool DEBUG 2024-02-23 13:25:37,204: http://localhost:39427 "GET /api/jobs/f7b3fc53f9a1cdab HTTP/1.1" 200 1005 urllib3.connectionpool DEBUG 2024-02-23 13:25:37,463: Starting new HTTP connection (1): localhost:39427 urllib3.connectionpool DEBUG 2024-02-23 13:25:37,492: http://localhost:39427 "GET /api/jobs/f7b3fc53f9a1cdab HTTP/1.1" 200 1005 urllib3.connectionpool DEBUG 2024-02-23 13:25:37,746: Starting new HTTP connection (1): localhost:39427 urllib3.connectionpool DEBUG 2024-02-23 13:25:37,783: http://localhost:39427 "GET /api/jobs/f7b3fc53f9a1cdab HTTP/1.1" 200 1005 urllib3.connectionpool DEBUG 2024-02-23 13:25:38,037: Starting new HTTP connection (1): localhost:39427 urllib3.connectionpool DEBUG 2024-02-23 13:25:38,068: http://localhost:39427 "GET /api/jobs/f7b3fc53f9a1cdab HTTP/1.1" 200 1005 urllib3.connectionpool DEBUG 2024-02-23 13:25:38,321: Starting new HTTP connection (1): localhost:39427 urllib3.connectionpool DEBUG 2024-02-23 13:25:38,353: http://localhost:39427 "GET /api/jobs/f7b3fc53f9a1cdab HTTP/1.1" 200 1005 urllib3.connectionpool DEBUG 2024-02-23 13:25:38,606: Starting new HTTP connection (1): localhost:39427 urllib3.connectionpool DEBUG 2024-02-23 13:25:38,639: http://localhost:39427 "GET /api/jobs/f7b3fc53f9a1cdab HTTP/1.1" 200 1005 urllib3.connectionpool DEBUG 2024-02-23 13:25:38,893: Starting new HTTP connection (1): localhost:39427 urllib3.connectionpool DEBUG 2024-02-23 13:25:38,927: http://localhost:39427 "GET /api/jobs/f7b3fc53f9a1cdab HTTP/1.1" 200 1005 urllib3.connectionpool DEBUG 2024-02-23 13:25:39,181: Starting new HTTP connection (1): localhost:39427 urllib3.connectionpool DEBUG 2024-02-23 13:25:39,212: http://localhost:39427 "GET /api/jobs/f7b3fc53f9a1cdab HTTP/1.1" 200 1005 urllib3.connectionpool DEBUG 2024-02-23 13:25:39,466: Starting new HTTP connection (1): localhost:39427 urllib3.connectionpool DEBUG 2024-02-23 13:25:39,499: http://localhost:39427 "GET /api/jobs/f7b3fc53f9a1cdab HTTP/1.1" 200 1005 urllib3.connectionpool DEBUG 2024-02-23 13:25:39,752: Starting new HTTP connection (1): localhost:39427 urllib3.connectionpool DEBUG 2024-02-23 13:25:39,787: http://localhost:39427 "GET /api/jobs/f7b3fc53f9a1cdab HTTP/1.1" 200 1005 urllib3.connectionpool DEBUG 2024-02-23 13:25:40,041: Starting new HTTP connection (1): localhost:39427 urllib3.connectionpool DEBUG 2024-02-23 13:25:40,075: http://localhost:39427 "GET /api/jobs/f7b3fc53f9a1cdab HTTP/1.1" 200 1005 urllib3.connectionpool DEBUG 2024-02-23 13:25:40,328: Starting new HTTP connection (1): localhost:39427 urllib3.connectionpool DEBUG 2024-02-23 13:25:40,361: http://localhost:39427 "GET /api/jobs/f7b3fc53f9a1cdab HTTP/1.1" 200 1005 urllib3.connectionpool DEBUG 2024-02-23 13:25:40,615: Starting new HTTP connection (1): localhost:39427 urllib3.connectionpool DEBUG 2024-02-23 13:25:40,648: http://localhost:39427 "GET /api/jobs/f7b3fc53f9a1cdab HTTP/1.1" 200 1005 urllib3.connectionpool DEBUG 2024-02-23 13:25:40,902: Starting new HTTP connection (1): localhost:39427 urllib3.connectionpool DEBUG 2024-02-23 13:25:40,935: http://localhost:39427 "GET /api/jobs/f7b3fc53f9a1cdab HTTP/1.1" 200 1005 urllib3.connectionpool DEBUG 2024-02-23 13:25:41,189: Starting new HTTP connection (1): localhost:39427 urllib3.connectionpool DEBUG 2024-02-23 13:25:41,220: http://localhost:39427 "GET /api/jobs/f7b3fc53f9a1cdab HTTP/1.1" 200 1005 urllib3.connectionpool DEBUG 2024-02-23 13:25:41,474: Starting new HTTP connection (1): localhost:39427 urllib3.connectionpool DEBUG 2024-02-23 13:25:41,506: http://localhost:39427 "GET /api/jobs/f7b3fc53f9a1cdab HTTP/1.1" 200 1005 urllib3.connectionpool DEBUG 2024-02-23 13:25:41,760: Starting new HTTP connection (1): localhost:39427 urllib3.connectionpool DEBUG 2024-02-23 13:25:41,789: http://localhost:39427 "GET /api/jobs/f7b3fc53f9a1cdab HTTP/1.1" 200 1005 urllib3.connectionpool DEBUG 2024-02-23 13:25:42,042: Starting new HTTP connection (1): localhost:39427 urllib3.connectionpool DEBUG 2024-02-23 13:25:42,095: http://localhost:39427 "GET /api/jobs/f7b3fc53f9a1cdab HTTP/1.1" 200 1005 urllib3.connectionpool DEBUG 2024-02-23 13:25:42,349: Starting new HTTP connection (1): localhost:39427 urllib3.connectionpool DEBUG 2024-02-23 13:25:42,383: http://localhost:39427 "GET /api/jobs/f7b3fc53f9a1cdab HTTP/1.1" 200 1005 urllib3.connectionpool DEBUG 2024-02-23 13:25:42,637: Starting new HTTP connection (1): localhost:39427 urllib3.connectionpool DEBUG 2024-02-23 13:25:42,668: http://localhost:39427 "GET /api/jobs/f7b3fc53f9a1cdab HTTP/1.1" 200 1005 urllib3.connectionpool DEBUG 2024-02-23 13:25:42,922: Starting new HTTP connection (1): localhost:39427 urllib3.connectionpool DEBUG 2024-02-23 13:25:42,954: http://localhost:39427 "GET /api/jobs/f7b3fc53f9a1cdab HTTP/1.1" 200 1005 urllib3.connectionpool DEBUG 2024-02-23 13:25:43,208: Starting new HTTP connection (1): localhost:39427 urllib3.connectionpool DEBUG 2024-02-23 13:25:43,240: http://localhost:39427 "GET /api/jobs/f7b3fc53f9a1cdab HTTP/1.1" 200 1005 urllib3.connectionpool DEBUG 2024-02-23 13:25:43,494: Starting new HTTP connection (1): localhost:39427 urllib3.connectionpool DEBUG 2024-02-23 13:25:43,526: http://localhost:39427 "GET /api/jobs/f7b3fc53f9a1cdab HTTP/1.1" 200 1005 urllib3.connectionpool DEBUG 2024-02-23 13:25:43,779: Starting new HTTP connection (1): localhost:39427 urllib3.connectionpool DEBUG 2024-02-23 13:25:43,831: http://localhost:39427 "GET /api/jobs/f7b3fc53f9a1cdab HTTP/1.1" 200 1005 urllib3.connectionpool DEBUG 2024-02-23 13:25:44,085: Starting new HTTP connection (1): localhost:39427 urllib3.connectionpool DEBUG 2024-02-23 13:25:44,120: http://localhost:39427 "GET /api/jobs/f7b3fc53f9a1cdab HTTP/1.1" 200 1005 urllib3.connectionpool DEBUG 2024-02-23 13:25:44,374: Starting new HTTP connection (1): localhost:39427 urllib3.connectionpool DEBUG 2024-02-23 13:25:44,407: http://localhost:39427 "GET /api/jobs/f7b3fc53f9a1cdab HTTP/1.1" 200 1005 urllib3.connectionpool DEBUG 2024-02-23 13:25:44,661: Starting new HTTP connection (1): localhost:39427 urllib3.connectionpool DEBUG 2024-02-23 13:25:44,692: http://localhost:39427 "GET /api/jobs/f7b3fc53f9a1cdab HTTP/1.1" 200 1005 urllib3.connectionpool DEBUG 2024-02-23 13:25:44,946: Starting new HTTP connection (1): localhost:39427 urllib3.connectionpool DEBUG 2024-02-23 13:25:44,977: http://localhost:39427 "GET /api/jobs/f7b3fc53f9a1cdab HTTP/1.1" 200 1005 urllib3.connectionpool DEBUG 2024-02-23 13:25:45,230: Starting new HTTP connection (1): localhost:39427 urllib3.connectionpool DEBUG 2024-02-23 13:25:45,261: http://localhost:39427 "GET /api/jobs/f7b3fc53f9a1cdab HTTP/1.1" 200 1005 urllib3.connectionpool DEBUG 2024-02-23 13:25:45,515: Starting new HTTP connection (1): localhost:39427 urllib3.connectionpool DEBUG 2024-02-23 13:25:45,546: http://localhost:39427 "GET /api/jobs/f7b3fc53f9a1cdab HTTP/1.1" 200 1005 urllib3.connectionpool DEBUG 2024-02-23 13:25:45,799: Starting new HTTP connection (1): localhost:39427 urllib3.connectionpool DEBUG 2024-02-23 13:25:45,832: http://localhost:39427 "GET /api/jobs/f7b3fc53f9a1cdab HTTP/1.1" 200 1005 urllib3.connectionpool DEBUG 2024-02-23 13:25:46,085: Starting new HTTP connection (1): localhost:39427 urllib3.connectionpool DEBUG 2024-02-23 13:25:46,127: http://localhost:39427 "GET /api/jobs/f7b3fc53f9a1cdab HTTP/1.1" 200 1005 urllib3.connectionpool DEBUG 2024-02-23 13:25:46,381: Starting new HTTP connection (1): localhost:39427 urllib3.connectionpool DEBUG 2024-02-23 13:25:46,412: http://localhost:39427 "GET /api/jobs/f7b3fc53f9a1cdab HTTP/1.1" 200 1005 urllib3.connectionpool DEBUG 2024-02-23 13:25:46,666: Starting new HTTP connection (1): localhost:39427 urllib3.connectionpool DEBUG 2024-02-23 13:25:46,697: http://localhost:39427 "GET /api/jobs/f7b3fc53f9a1cdab HTTP/1.1" 200 1005 urllib3.connectionpool DEBUG 2024-02-23 13:25:46,950: Starting new HTTP connection (1): localhost:39427 urllib3.connectionpool DEBUG 2024-02-23 13:25:46,979: http://localhost:39427 "GET /api/jobs/f7b3fc53f9a1cdab HTTP/1.1" 200 1005 urllib3.connectionpool DEBUG 2024-02-23 13:25:47,233: Starting new HTTP connection (1): localhost:39427 urllib3.connectionpool DEBUG 2024-02-23 13:25:47,270: http://localhost:39427 "GET /api/jobs/f7b3fc53f9a1cdab HTTP/1.1" 200 1005 urllib3.connectionpool DEBUG 2024-02-23 13:25:47,524: Starting new HTTP connection (1): localhost:39427 urllib3.connectionpool DEBUG 2024-02-23 13:25:47,560: http://localhost:39427 "GET /api/jobs/f7b3fc53f9a1cdab HTTP/1.1" 200 1005 urllib3.connectionpool DEBUG 2024-02-23 13:25:47,814: Starting new HTTP connection (1): localhost:39427 urllib3.connectionpool DEBUG 2024-02-23 13:25:47,849: http://localhost:39427 "GET /api/jobs/f7b3fc53f9a1cdab HTTP/1.1" 200 1005 urllib3.connectionpool DEBUG 2024-02-23 13:25:48,104: Starting new HTTP connection (1): localhost:39427 urllib3.connectionpool DEBUG 2024-02-23 13:25:48,135: http://localhost:39427 "GET /api/jobs/f7b3fc53f9a1cdab HTTP/1.1" 200 1005 urllib3.connectionpool DEBUG 2024-02-23 13:25:48,389: Starting new HTTP connection (1): localhost:39427 urllib3.connectionpool DEBUG 2024-02-23 13:25:48,419: http://localhost:39427 "GET /api/jobs/f7b3fc53f9a1cdab HTTP/1.1" 200 1005 urllib3.connectionpool DEBUG 2024-02-23 13:25:48,673: Starting new HTTP connection (1): localhost:39427 urllib3.connectionpool DEBUG 2024-02-23 13:25:48,703: http://localhost:39427 "GET /api/jobs/f7b3fc53f9a1cdab HTTP/1.1" 200 1005 urllib3.connectionpool DEBUG 2024-02-23 13:25:48,957: Starting new HTTP connection (1): localhost:39427 urllib3.connectionpool DEBUG 2024-02-23 13:25:48,982: http://localhost:39427 "GET /api/jobs/f7b3fc53f9a1cdab HTTP/1.1" 200 1005 urllib3.connectionpool DEBUG 2024-02-23 13:25:49,236: Starting new HTTP connection (1): localhost:39427 urllib3.connectionpool DEBUG 2024-02-23 13:25:49,275: http://localhost:39427 "GET /api/jobs/f7b3fc53f9a1cdab HTTP/1.1" 200 1005 urllib3.connectionpool DEBUG 2024-02-23 13:25:49,529: Starting new HTTP connection (1): localhost:39427 urllib3.connectionpool DEBUG 2024-02-23 13:25:49,560: http://localhost:39427 "GET /api/jobs/f7b3fc53f9a1cdab HTTP/1.1" 200 1005 urllib3.connectionpool DEBUG 2024-02-23 13:25:49,814: Starting new HTTP connection (1): localhost:39427 urllib3.connectionpool DEBUG 2024-02-23 13:25:49,845: http://localhost:39427 "GET /api/jobs/f7b3fc53f9a1cdab HTTP/1.1" 200 1005 galaxy.jobs.runners.util.process_groups DEBUG 2024-02-23 13:25:49,969 [pN:main.1,p:76310,tN:LocalRunner.work_thread-1] check_pg(): No process found in process group 76490 galaxy.jobs.runners.local DEBUG 2024-02-23 13:25:49,970 [pN:main.1,p:76310,tN:LocalRunner.work_thread-1] execution finished: /tmp/tmpu7x63f_i/job_working_directory/000/2/galaxy_2.sh urllib3.connectionpool DEBUG 2024-02-23 13:25:50,100: Starting new HTTP connection (1): localhost:39427 urllib3.connectionpool DEBUG 2024-02-23 13:25:50,130: http://localhost:39427 "GET /api/jobs/f7b3fc53f9a1cdab HTTP/1.1" 200 995 urllib3.connectionpool DEBUG 2024-02-23 13:25:50,134: Starting new HTTP connection (1): localhost:39427 urllib3.connectionpool DEBUG 2024-02-23 13:25:50,173: http://localhost:39427 "GET /api/jobs/f7b3fc53f9a1cdab?full=true HTTP/1.1" 200 23769 urllib3.connectionpool DEBUG 2024-02-23 13:25:50,177: Starting new HTTP connection (1): localhost:39427 urllib3.connectionpool DEBUG 2024-02-23 13:25:50,208: http://localhost:39427 "GET /api/jobs/f7b3fc53f9a1cdab HTTP/1.1" 200 995 urllib3.connectionpool DEBUG 2024-02-23 13:25:50,212: Starting new HTTP connection (1): localhost:39427 urllib3.connectionpool DEBUG 2024-02-23 13:25:50,246: http://localhost:39427 "GET /api/histories/d18be19a19c462e2/contents/f7b3fc53f9a1cdab/display?raw=true HTTP/1.1" 200 747 urllib3.connectionpool DEBUG 2024-02-23 13:25:50,251: Starting new HTTP connection (1): localhost:39427 urllib3.connectionpool DEBUG 2024-02-23 13:25:50,292: http://localhost:39427 "GET /api/tools/ncbi_fcs_adaptor/test_data_download?filename=adaptor_report.tab&tool_version=0.5.0+galaxy0 HTTP/1.1" 200 None urllib3.connectionpool DEBUG 2024-02-23 13:25:50,299: Starting new HTTP connection (1): localhost:39427 urllib3.connectionpool DEBUG 2024-02-23 13:25:50,355: http://localhost:39427 "GET /api/histories/d18be19a19c462e2/contents/f7b3fc53f9a1cdab HTTP/1.1" 200 2910 urllib3.connectionpool DEBUG 2024-02-23 13:25:50,358: Starting new HTTP connection (1): localhost:39427 urllib3.connectionpool DEBUG 2024-02-23 13:25:50,385: http://localhost:39427 "GET /api/histories/d18be19a19c462e2/contents/f7b3fc53f9a1cdab/provenance HTTP/1.1" 200 None urllib3.connectionpool DEBUG 2024-02-23 13:25:50,389: Starting new HTTP connection (1): localhost:39427 urllib3.connectionpool DEBUG 2024-02-23 13:25:50,412: http://localhost:39427 "GET /api/jobs/f7b3fc53f9a1cdab/outputs HTTP/1.1" 200 146 urllib3.connectionpool DEBUG 2024-02-23 13:25:50,416: Starting new HTTP connection (1): localhost:39427 urllib3.connectionpool DEBUG 2024-02-23 13:25:50,446: http://localhost:39427 "GET /api/jobs/f7b3fc53f9a1cdab HTTP/1.1" 200 995 urllib3.connectionpool DEBUG 2024-02-23 13:25:50,450: Starting new HTTP connection (1): localhost:39427 urllib3.connectionpool DEBUG 2024-02-23 13:25:50,473: http://localhost:39427 "GET /api/histories/d18be19a19c462e2/contents/e83007cfd86577e9/display?raw=true HTTP/1.1" 200 516117 urllib3.connectionpool DEBUG 2024-02-23 13:25:50,485: Starting new HTTP connection (1): localhost:39427 urllib3.connectionpool DEBUG 2024-02-23 13:25:50,506: http://localhost:39427 "GET /api/tools/ncbi_fcs_adaptor/test_data_download?filename=clean_fasta.fa.gz&tool_version=0.5.0+galaxy0 HTTP/1.1" 200 None urllib3.connectionpool DEBUG 2024-02-23 13:25:50,604: Starting new HTTP connection (1): localhost:39427 urllib3.connectionpool DEBUG 2024-02-23 13:25:50,659: http://localhost:39427 "GET /api/histories/d18be19a19c462e2/contents/e83007cfd86577e9 HTTP/1.1" 200 2257 urllib3.connectionpool DEBUG 2024-02-23 13:25:50,663: Starting new HTTP connection (1): localhost:39427 urllib3.connectionpool DEBUG 2024-02-23 13:25:50,691: http://localhost:39427 "GET /api/histories/d18be19a19c462e2/contents/e83007cfd86577e9/provenance HTTP/1.1" 200 None urllib3.connectionpool DEBUG 2024-02-23 13:25:50,695: Starting new HTTP connection (1): localhost:39427 urllib3.connectionpool DEBUG 2024-02-23 13:25:50,719: http://localhost:39427 "GET /api/jobs/f7b3fc53f9a1cdab/outputs HTTP/1.1" 200 146 urllib3.connectionpool DEBUG 2024-02-23 13:25:50,722: Starting new HTTP connection (1): localhost:39427 urllib3.connectionpool DEBUG 2024-02-23 13:25:50,770: http://localhost:39427 "DELETE /api/histories/d18be19a19c462e2 HTTP/1.1" 200 1061 urllib3.connectionpool DEBUG 2024-02-23 13:25:50,774: Starting new HTTP connection (1): localhost:39427 urllib3.connectionpool DEBUG 2024-02-23 13:25:50,797: http://localhost:39427 "GET /api/tools/ncbi_fcs_adaptor/test_data?tool_version=0.5.0%2Bgalaxy0 HTTP/1.1" 200 None urllib3.connectionpool DEBUG 2024-02-23 13:25:50,801: Starting new HTTP connection (1): localhost:39427 urllib3.connectionpool DEBUG 2024-02-23 13:25:50,863: http://localhost:39427 "POST /api/histories HTTP/1.1" 200 1000 urllib3.connectionpool DEBUG 2024-02-23 13:25:50,867: Starting new HTTP connection (1): localhost:39427 urllib3.connectionpool DEBUG 2024-02-23 13:25:50,876: http://localhost:39427 "GET /api/tools/ncbi_fcs_adaptor/test_data_path?filename=fcsadaptor_prok_test.fa.gz&tool_version=0.5.0+galaxy0 HTTP/1.1" 200 None urllib3.connectionpool DEBUG 2024-02-23 13:25:50,879: Starting new HTTP connection (1): localhost:39427 urllib3.connectionpool DEBUG 2024-02-23 13:25:50,884: http://localhost:39427 "GET /api/version HTTP/1.1" 200 49 urllib3.connectionpool DEBUG 2024-02-23 13:25:50,887: Starting new HTTP connection (1): localhost:39427 urllib3.connectionpool DEBUG 2024-02-23 13:25:50,909: http://localhost:39427 "GET /api/tools/ncbi_fcs_adaptor/test_data_download?filename=fcsadaptor_prok_test.fa.gz&tool_version=0.5.0+galaxy0 HTTP/1.1" 200 None urllib3.connectionpool DEBUG 2024-02-23 13:25:50,914: Starting new HTTP connection (1): localhost:39427 galaxy.jobs DEBUG 2024-02-23 13:25:49,995 [pN:main.1,p:76310,tN:LocalRunner.work_thread-1] finish(): Moved /tmp/tmpu7x63f_i/job_working_directory/000/2/outputs/dataset_1a2ea823-d7e6-495f-a31e-e8d6621f705c.dat to /tmp/tmpu7x63f_i/files/1/a/2/dataset_1a2ea823-d7e6-495f-a31e-e8d6621f705c.dat galaxy.jobs DEBUG 2024-02-23 13:25:49,995 [pN:main.1,p:76310,tN:LocalRunner.work_thread-1] finish(): Moved /tmp/tmpu7x63f_i/job_working_directory/000/2/outputs/dataset_4e39d590-f2e3-4821-87bc-68df5a7106cb.dat to /tmp/tmpu7x63f_i/files/4/e/3/dataset_4e39d590-f2e3-4821-87bc-68df5a7106cb.dat galaxy.model.metadata DEBUG 2024-02-23 13:25:50,004 [pN:main.1,p:76310,tN:LocalRunner.work_thread-1] loading metadata from file for: HistoryDatasetAssociation 2 galaxy.model.metadata DEBUG 2024-02-23 13:25:50,011 [pN:main.1,p:76310,tN:LocalRunner.work_thread-1] loading metadata from file for: HistoryDatasetAssociation 3 galaxy.jobs DEBUG 2024-02-23 13:25:50,081 [pN:main.1,p:76310,tN:LocalRunner.work_thread-1] job_wrapper.finish for job 2 executed (91.685 ms) multipart.multipart DEBUG 2024-02-23 13:25:50,805 [pN:main.1,p:76310,tN:MainThread] Calling on_field_start with no data multipart.multipart DEBUG 2024-02-23 13:25:50,805 [pN:main.1,p:76310,tN:MainThread] Calling on_field_name with data[0:4] multipart.multipart DEBUG 2024-02-23 13:25:50,805 [pN:main.1,p:76310,tN:MainThread] Calling on_field_data with data[5:63] multipart.multipart DEBUG 2024-02-23 13:25:50,805 [pN:main.1,p:76310,tN:MainThread] Calling on_field_end with no data multipart.multipart DEBUG 2024-02-23 13:25:50,805 [pN:main.1,p:76310,tN:MainThread] Calling on_end with no data galaxy.tools INFO 2024-02-23 13:25:50,949 [pN:main.1,p:76310,tN:WSGI_8] Validated and populated state for tool request (7.807 ms) galaxy.tools.actions.upload DEBUG 2024-02-23 13:25:50,953 [pN:main.1,p:76310,tN:WSGI_8] Persisted uploads (0.127 ms) urllib3.connectionpool DEBUG 2024-02-23 13:25:51,025: http://localhost:39427 "POST /api/tools HTTP/1.1" 200 None urllib3.connectionpool DEBUG 2024-02-23 13:25:51,029: Starting new HTTP connection (1): localhost:39427 urllib3.connectionpool DEBUG 2024-02-23 13:25:51,061: http://localhost:39427 "GET /api/jobs/e83007cfd86577e9 HTTP/1.1" 200 1043 urllib3.connectionpool DEBUG 2024-02-23 13:25:51,315: Starting new HTTP connection (1): localhost:39427 urllib3.connectionpool DEBUG 2024-02-23 13:25:51,386: http://localhost:39427 "GET /api/jobs/e83007cfd86577e9 HTTP/1.1" 200 1043 urllib3.connectionpool DEBUG 2024-02-23 13:25:51,640: Starting new HTTP connection (1): localhost:39427 urllib3.connectionpool DEBUG 2024-02-23 13:25:51,678: http://localhost:39427 "GET /api/jobs/e83007cfd86577e9 HTTP/1.1" 200 1464 urllib3.connectionpool DEBUG 2024-02-23 13:25:51,932: Starting new HTTP connection (1): localhost:39427 urllib3.connectionpool DEBUG 2024-02-23 13:25:51,969: http://localhost:39427 "GET /api/jobs/e83007cfd86577e9 HTTP/1.1" 200 1464 galaxy.tools.actions.upload DEBUG 2024-02-23 13:25:50,994 [pN:main.1,p:76310,tN:WSGI_8] Checked uploads (41.512 ms) galaxy.tools.actions.upload DEBUG 2024-02-23 13:25:50,996 [pN:main.1,p:76310,tN:WSGI_8] Created upload job (2.119 ms) galaxy.tools.execute DEBUG 2024-02-23 13:25:50,997 [pN:main.1,p:76310,tN:WSGI_8] Tool upload1 created job None (44.285 ms) galaxy.web_stack.handlers INFO 2024-02-23 13:25:51,010 [pN:main.1,p:76310,tN:WSGI_8] (Job[id=3,tool_id=upload1]) Handler '_default_' assigned using 'HANDLER_ASSIGNMENT_METHODS.DB_SKIP_LOCKED' assignment method galaxy.tools.execute DEBUG 2024-02-23 13:25:51,014 [pN:main.1,p:76310,tN:WSGI_8] Created 1 job(s) for tool upload1 request (64.682 ms) galaxy.jobs.mapper DEBUG 2024-02-23 13:25:51,360 [pN:main.1,p:76310,tN:JobHandlerQueue.monitor_thread] (3) Mapped job to destination id: docker_local galaxy.jobs.handler DEBUG 2024-02-23 13:25:51,366 [pN:main.1,p:76310,tN:JobHandlerQueue.monitor_thread] (3) Dispatching to local runner galaxy.jobs DEBUG 2024-02-23 13:25:51,383 [pN:main.1,p:76310,tN:JobHandlerQueue.monitor_thread] (3) Persisting job destination (destination id: docker_local) galaxy.jobs DEBUG 2024-02-23 13:25:51,393 [pN:main.1,p:76310,tN:JobHandlerQueue.monitor_thread] (3) Working directory for job is: /tmp/tmpu7x63f_i/job_working_directory/000/3 galaxy.jobs.runners DEBUG 2024-02-23 13:25:51,399 [pN:main.1,p:76310,tN:JobHandlerQueue.monitor_thread] Job [3] queued (32.821 ms) galaxy.jobs.handler INFO 2024-02-23 13:25:51,420 [pN:main.1,p:76310,tN:JobHandlerQueue.monitor_thread] (3) Job dispatched galaxy.jobs DEBUG 2024-02-23 13:25:51,459 [pN:main.1,p:76310,tN:LocalRunner.work_thread-3] Job wrapper for Job [3] prepared (38.864 ms) galaxy.tool_util.deps.containers INFO 2024-02-23 13:25:51,460 [pN:main.1,p:76310,tN:LocalRunner.work_thread-3] Checking with container resolver [ExplicitContainerResolver[]] found description [None] galaxy.tool_util.deps.containers INFO 2024-02-23 13:25:51,460 [pN:main.1,p:76310,tN:LocalRunner.work_thread-3] Checking with container resolver [CachedMulledDockerContainerResolver[namespace=biocontainers]] found description [None] galaxy.tool_util.deps.containers INFO 2024-02-23 13:25:51,460 [pN:main.1,p:76310,tN:LocalRunner.work_thread-3] Checking with container resolver [CachedMulledDockerContainerResolver[namespace=local]] found description [None] galaxy.tool_util.deps.containers INFO 2024-02-23 13:25:51,460 [pN:main.1,p:76310,tN:LocalRunner.work_thread-3] Checking with container resolver [MulledDockerContainerResolver[namespace=biocontainers]] found description [None] galaxy.tool_util.deps.containers INFO 2024-02-23 13:25:51,460 [pN:main.1,p:76310,tN:LocalRunner.work_thread-3] Checking with container resolver [BuildDockerContainerResolver[namespace=local]] found description [None] galaxy.jobs.command_factory INFO 2024-02-23 13:25:51,486 [pN:main.1,p:76310,tN:LocalRunner.work_thread-3] Built script [/tmp/tmpu7x63f_i/job_working_directory/000/3/tool_script.sh] for tool command [python '/scratch/rico/galaxy/tools/data_source/upload.py' '/scratch/rico/galaxy' '/tmp/tmpu7x63f_i/job_working_directory/000/3/registry.xml' '/tmp/tmpu7x63f_i/job_working_directory/000/3/upload_params.json' '4:/tmp/tmpu7x63f_i/job_working_directory/000/3/outputs/dataset_96bb2ac5-08a0-48d7-9de5-79affb15526d_files:/tmp/tmpu7x63f_i/job_working_directory/000/3/outputs/dataset_96bb2ac5-08a0-48d7-9de5-79affb15526d.dat'] galaxy.jobs.runners DEBUG 2024-02-23 13:25:51,512 [pN:main.1,p:76310,tN:LocalRunner.work_thread-3] (3) command is: mkdir -p working outputs configs if [ -d _working ]; then rm -rf working/ outputs/ configs/; cp -R _working working; cp -R _outputs outputs; cp -R _configs configs else cp -R working _working; cp -R outputs _outputs; cp -R configs _configs fi cd working; /bin/bash /tmp/tmpu7x63f_i/job_working_directory/000/3/tool_script.sh > '../outputs/tool_stdout' 2> '../outputs/tool_stderr'; return_code=$?; echo $return_code > /tmp/tmpu7x63f_i/job_working_directory/000/3/galaxy_3.ec; cd '/tmp/tmpu7x63f_i/job_working_directory/000/3'; [ "$GALAXY_VIRTUAL_ENV" = "None" ] && GALAXY_VIRTUAL_ENV="$_GALAXY_VIRTUAL_ENV"; _galaxy_setup_environment True; python metadata/set.py; sh -c "exit $return_code" galaxy.jobs.runners.local DEBUG 2024-02-23 13:25:51,533 [pN:main.1,p:76310,tN:LocalRunner.work_thread-3] (3) executing job script: /tmp/tmpu7x63f_i/job_working_directory/000/3/galaxy_3.sh urllib3.connectionpool DEBUG 2024-02-23 13:25:52,222: Starting new HTTP connection (1): localhost:39427 urllib3.connectionpool DEBUG 2024-02-23 13:25:52,249: http://localhost:39427 "GET /api/jobs/e83007cfd86577e9 HTTP/1.1" 200 1464 urllib3.connectionpool DEBUG 2024-02-23 13:25:52,503: Starting new HTTP connection (1): localhost:39427 urllib3.connectionpool DEBUG 2024-02-23 13:25:52,540: http://localhost:39427 "GET /api/jobs/e83007cfd86577e9 HTTP/1.1" 200 1464 urllib3.connectionpool DEBUG 2024-02-23 13:25:52,794: Starting new HTTP connection (1): localhost:39427 urllib3.connectionpool DEBUG 2024-02-23 13:25:52,828: http://localhost:39427 "GET /api/jobs/e83007cfd86577e9 HTTP/1.1" 200 1464 urllib3.connectionpool DEBUG 2024-02-23 13:25:53,083: Starting new HTTP connection (1): localhost:39427 urllib3.connectionpool DEBUG 2024-02-23 13:25:53,114: http://localhost:39427 "GET /api/jobs/e83007cfd86577e9 HTTP/1.1" 200 1464 urllib3.connectionpool DEBUG 2024-02-23 13:25:53,368: Starting new HTTP connection (1): localhost:39427 urllib3.connectionpool DEBUG 2024-02-23 13:25:53,403: http://localhost:39427 "GET /api/jobs/e83007cfd86577e9 HTTP/1.1" 200 1464 urllib3.connectionpool DEBUG 2024-02-23 13:25:53,657: Starting new HTTP connection (1): localhost:39427 urllib3.connectionpool DEBUG 2024-02-23 13:25:53,688: http://localhost:39427 "GET /api/jobs/e83007cfd86577e9 HTTP/1.1" 200 1464 urllib3.connectionpool DEBUG 2024-02-23 13:25:53,942: Starting new HTTP connection (1): localhost:39427 urllib3.connectionpool DEBUG 2024-02-23 13:25:53,965: http://localhost:39427 "GET /api/jobs/e83007cfd86577e9 HTTP/1.1" 200 1464 urllib3.connectionpool DEBUG 2024-02-23 13:25:54,219: Starting new HTTP connection (1): localhost:39427 urllib3.connectionpool DEBUG 2024-02-23 13:25:54,242: http://localhost:39427 "GET /api/jobs/e83007cfd86577e9 HTTP/1.1" 200 1464 urllib3.connectionpool DEBUG 2024-02-23 13:25:54,496: Starting new HTTP connection (1): localhost:39427 urllib3.connectionpool DEBUG 2024-02-23 13:25:54,525: http://localhost:39427 "GET /api/jobs/e83007cfd86577e9 HTTP/1.1" 200 1464 urllib3.connectionpool DEBUG 2024-02-23 13:25:54,779: Starting new HTTP connection (1): localhost:39427 urllib3.connectionpool DEBUG 2024-02-23 13:25:54,811: http://localhost:39427 "GET /api/jobs/e83007cfd86577e9 HTTP/1.1" 200 1464 urllib3.connectionpool DEBUG 2024-02-23 13:25:55,064: Starting new HTTP connection (1): localhost:39427 urllib3.connectionpool DEBUG 2024-02-23 13:25:55,087: http://localhost:39427 "GET /api/jobs/e83007cfd86577e9 HTTP/1.1" 200 1464 urllib3.connectionpool DEBUG 2024-02-23 13:25:55,341: Starting new HTTP connection (1): localhost:39427 urllib3.connectionpool DEBUG 2024-02-23 13:25:55,372: http://localhost:39427 "GET /api/jobs/e83007cfd86577e9 HTTP/1.1" 200 1464 urllib3.connectionpool DEBUG 2024-02-23 13:25:55,626: Starting new HTTP connection (1): localhost:39427 urllib3.connectionpool DEBUG 2024-02-23 13:25:55,661: http://localhost:39427 "GET /api/jobs/e83007cfd86577e9 HTTP/1.1" 200 1464 urllib3.connectionpool DEBUG 2024-02-23 13:25:55,915: Starting new HTTP connection (1): localhost:39427 urllib3.connectionpool DEBUG 2024-02-23 13:25:55,940: http://localhost:39427 "GET /api/jobs/e83007cfd86577e9 HTTP/1.1" 200 1464 urllib3.connectionpool DEBUG 2024-02-23 13:25:56,194: Starting new HTTP connection (1): localhost:39427 urllib3.connectionpool DEBUG 2024-02-23 13:25:56,217: http://localhost:39427 "GET /api/jobs/e83007cfd86577e9 HTTP/1.1" 200 1464 urllib3.connectionpool DEBUG 2024-02-23 13:25:56,470: Starting new HTTP connection (1): localhost:39427 urllib3.connectionpool DEBUG 2024-02-23 13:25:56,494: http://localhost:39427 "GET /api/jobs/e83007cfd86577e9 HTTP/1.1" 200 1464 urllib3.connectionpool DEBUG 2024-02-23 13:25:56,748: Starting new HTTP connection (1): localhost:39427 urllib3.connectionpool DEBUG 2024-02-23 13:25:56,782: http://localhost:39427 "GET /api/jobs/e83007cfd86577e9 HTTP/1.1" 200 1464 urllib3.connectionpool DEBUG 2024-02-23 13:25:57,036: Starting new HTTP connection (1): localhost:39427 urllib3.connectionpool DEBUG 2024-02-23 13:25:57,059: http://localhost:39427 "GET /api/jobs/e83007cfd86577e9 HTTP/1.1" 200 1464 urllib3.connectionpool DEBUG 2024-02-23 13:25:57,314: Starting new HTTP connection (1): localhost:39427 urllib3.connectionpool DEBUG 2024-02-23 13:25:57,338: http://localhost:39427 "GET /api/jobs/e83007cfd86577e9 HTTP/1.1" 200 1464 urllib3.connectionpool DEBUG 2024-02-23 13:25:57,592: Starting new HTTP connection (1): localhost:39427 urllib3.connectionpool DEBUG 2024-02-23 13:25:57,615: http://localhost:39427 "GET /api/jobs/e83007cfd86577e9 HTTP/1.1" 200 1464 urllib3.connectionpool DEBUG 2024-02-23 13:25:57,869: Starting new HTTP connection (1): localhost:39427 urllib3.connectionpool DEBUG 2024-02-23 13:25:57,895: http://localhost:39427 "GET /api/jobs/e83007cfd86577e9 HTTP/1.1" 200 1454 urllib3.connectionpool DEBUG 2024-02-23 13:25:57,899: Starting new HTTP connection (1): localhost:39427 galaxy.jobs.runners.util.process_groups DEBUG 2024-02-23 13:25:57,636 [pN:main.1,p:76310,tN:LocalRunner.work_thread-3] check_pg(): No process found in process group 76848 galaxy.jobs.runners.local DEBUG 2024-02-23 13:25:57,638 [pN:main.1,p:76310,tN:LocalRunner.work_thread-3] execution finished: /tmp/tmpu7x63f_i/job_working_directory/000/3/galaxy_3.sh galaxy.jobs DEBUG 2024-02-23 13:25:57,660 [pN:main.1,p:76310,tN:LocalRunner.work_thread-3] finish(): Moved /tmp/tmpu7x63f_i/job_working_directory/000/3/outputs/dataset_96bb2ac5-08a0-48d7-9de5-79affb15526d.dat to /tmp/tmpu7x63f_i/files/9/6/b/dataset_96bb2ac5-08a0-48d7-9de5-79affb15526d.dat galaxy.model.metadata DEBUG 2024-02-23 13:25:57,668 [pN:main.1,p:76310,tN:LocalRunner.work_thread-3] loading metadata from file for: HistoryDatasetAssociation 4 galaxy.jobs DEBUG 2024-02-23 13:25:57,695 [pN:main.1,p:76310,tN:LocalRunner.work_thread-3] job_wrapper.finish for job 3 executed (41.217 ms) galaxy.tools INFO 2024-02-23 13:25:57,927 [pN:main.1,p:76310,tN:WSGI_5] Validated and populated state for tool request (4.567 ms) galaxy.tools.actions INFO 2024-02-23 13:25:57,932 [pN:main.1,p:76310,tN:WSGI_5] Handled output named adaptor_report for tool ncbi_fcs_adaptor (1.226 ms) galaxy.tools.actions INFO 2024-02-23 13:25:57,933 [pN:main.1,p:76310,tN:WSGI_5] Handled output named clean_fasta for tool ncbi_fcs_adaptor (0.730 ms) galaxy.tools.actions DEBUG 2024-02-23 13:25:57,933 [pN:main.1,p:76310,tN:WSGI_5] Tool ncbi_fcs_adaptor output adaptor_log: dataset output filter (advanced['optional_log'] is not None and 'adaptor_log' in advanced['optional_log'].split(',')) failed: 'list' object has no attribute 'split' galaxy.tools.actions INFO 2024-02-23 13:25:57,936 [pN:main.1,p:76310,tN:WSGI_5] Handled output named adaptor_log for tool ncbi_fcs_adaptor (3.053 ms) galaxy.tools.actions DEBUG 2024-02-23 13:25:57,936 [pN:main.1,p:76310,tN:WSGI_5] Tool ncbi_fcs_adaptor output validate_fasta_log: dataset output filter (advanced['optional_log'] is not None and 'validate_fasta_log' in advanced['optional_log'].split(',')) failed: 'list' object has no attribute 'split' galaxy.tools.actions INFO 2024-02-23 13:25:57,939 [pN:main.1,p:76310,tN:WSGI_5] Handled output named validate_fasta_log for tool ncbi_fcs_adaptor (2.494 ms) galaxy.tools.actions INFO 2024-02-23 13:25:57,947 [pN:main.1,p:76310,tN:WSGI_5] Added output datasets to history (7.846 ms) galaxy.tools.actions INFO 2024-02-23 13:25:57,950 [pN:main.1,p:76310,tN:WSGI_5] Setup for job Job[unflushed,tool_id=ncbi_fcs_adaptor] complete, ready to be enqueued (2.292 ms) galaxy.tools.execute DEBUG 2024-02-23 13:25:57,950 [pN:main.1,p:76310,tN:WSGI_5] Tool ncbi_fcs_adaptor created job None (20.728 ms) galaxy.web_stack.handlers INFO 2024-02-23 13:25:57,971 [pN:main.1,p:76310,tN:WSGI_5] (Job[id=4,tool_id=ncbi_fcs_adaptor]) Handler '_default_' assigned using 'HANDLER_ASSIGNMENT_METHODS.DB_SKIP_LOCKED' assignment method galaxy.tools.execute DEBUG 2024-02-23 13:25:57,975 [pN:main.1,p:76310,tN:WSGI_5] Created 1 job(s) for tool ncbi_fcs_adaptor request (47.336 ms) urllib3.connectionpool DEBUG 2024-02-23 13:25:57,994: http://localhost:39427 "POST /api/tools HTTP/1.1" 200 None urllib3.connectionpool DEBUG 2024-02-23 13:25:58,000: Starting new HTTP connection (1): localhost:39427 urllib3.connectionpool DEBUG 2024-02-23 13:25:58,029: http://localhost:39427 "GET /api/jobs/92ca5dfeb6970722 HTTP/1.1" 200 1113 urllib3.connectionpool DEBUG 2024-02-23 13:25:58,283: Starting new HTTP connection (1): localhost:39427 urllib3.connectionpool DEBUG 2024-02-23 13:25:58,320: http://localhost:39427 "GET /api/jobs/92ca5dfeb6970722 HTTP/1.1" 200 1113 urllib3.connectionpool DEBUG 2024-02-23 13:25:58,574: Starting new HTTP connection (1): localhost:39427 urllib3.connectionpool DEBUG 2024-02-23 13:25:58,650: http://localhost:39427 "GET /api/jobs/92ca5dfeb6970722 HTTP/1.1" 200 1113 urllib3.connectionpool DEBUG 2024-02-23 13:25:58,905: Starting new HTTP connection (1): localhost:39427 urllib3.connectionpool DEBUG 2024-02-23 13:25:58,942: http://localhost:39427 "GET /api/jobs/92ca5dfeb6970722 HTTP/1.1" 200 1245 galaxy.jobs.mapper DEBUG 2024-02-23 13:25:58,624 [pN:main.1,p:76310,tN:JobHandlerQueue.monitor_thread] (4) Mapped job to destination id: docker_local galaxy.jobs.handler DEBUG 2024-02-23 13:25:58,630 [pN:main.1,p:76310,tN:JobHandlerQueue.monitor_thread] (4) Dispatching to local runner galaxy.jobs DEBUG 2024-02-23 13:25:58,647 [pN:main.1,p:76310,tN:JobHandlerQueue.monitor_thread] (4) Persisting job destination (destination id: docker_local) galaxy.jobs DEBUG 2024-02-23 13:25:58,659 [pN:main.1,p:76310,tN:JobHandlerQueue.monitor_thread] (4) Working directory for job is: /tmp/tmpu7x63f_i/job_working_directory/000/4 galaxy.jobs.runners DEBUG 2024-02-23 13:25:58,666 [pN:main.1,p:76310,tN:JobHandlerQueue.monitor_thread] Job [4] queued (36.198 ms) galaxy.jobs.handler INFO 2024-02-23 13:25:58,679 [pN:main.1,p:76310,tN:JobHandlerQueue.monitor_thread] (4) Job dispatched galaxy.jobs DEBUG 2024-02-23 13:25:58,748 [pN:main.1,p:76310,tN:LocalRunner.work_thread-3] Job wrapper for Job [4] prepared (53.521 ms) galaxy.tool_util.deps.containers INFO 2024-02-23 13:25:58,749 [pN:main.1,p:76310,tN:LocalRunner.work_thread-3] Checking with container resolver [ExplicitContainerResolver[]] found description [ContainerDescription[identifier=ncbi/fcs-adaptor:0.5.0,type=docker]] galaxy.jobs.command_factory INFO 2024-02-23 13:25:58,784 [pN:main.1,p:76310,tN:LocalRunner.work_thread-3] Built script [/tmp/tmpu7x63f_i/job_working_directory/000/4/tool_script.sh] for tool command [/app/fcs/bin/av_screen_x -o "$(pwd)" '--prok' '/tmp/tmpu7x63f_i/files/9/6/b/dataset_96bb2ac5-08a0-48d7-9de5-79affb15526d.dat'] galaxy.jobs.runners DEBUG 2024-02-23 13:25:58,828 [pN:main.1,p:76310,tN:LocalRunner.work_thread-3] (4) command is: mkdir -p working outputs configs if [ -d _working ]; then rm -rf working/ outputs/ configs/; cp -R _working working; cp -R _outputs outputs; cp -R _configs configs else cp -R working _working; cp -R outputs _outputs; cp -R configs _configs fi cd working; _on_exit() { docker kill 44f5466e5ac0453c8dfe234c278e5cf8 &> /dev/null } trap _on_exit EXIT docker inspect ncbi/fcs-adaptor:0.5.0 > /dev/null 2>&1 [ $? -ne 0 ] && docker pull ncbi/fcs-adaptor:0.5.0 > /dev/null 2>&1 docker run -e "GALAXY_SLOTS=$GALAXY_SLOTS" -e "GALAXY_MEMORY_MB=$GALAXY_MEMORY_MB" -e "GALAXY_MEMORY_MB_PER_SLOT=$GALAXY_MEMORY_MB_PER_SLOT" -e "HOME=$HOME" -e "_GALAXY_JOB_HOME_DIR=$_GALAXY_JOB_HOME_DIR" -e "_GALAXY_JOB_TMP_DIR=$_GALAXY_JOB_TMP_DIR" -e "TMPDIR=$TMPDIR" -e "TMP=$TMP" -e "TEMP=$TEMP" --name 44f5466e5ac0453c8dfe234c278e5cf8 -v "$_GALAXY_JOB_TMP_DIR:$_GALAXY_JOB_TMP_DIR:rw" -v "$TMPDIR:$TMPDIR:rw" -v "$TMP:$TMP:rw" -v "$TEMP:$TEMP:rw" -v /scratch/rico/galaxy:/scratch/rico/galaxy:ro -v /scratch/rico/galaxytools/tools/ncbi_fcs_adaptor:/scratch/rico/galaxytools/tools/ncbi_fcs_adaptor:ro -v /tmp/tmpu7x63f_i/job_working_directory/000/4:/tmp/tmpu7x63f_i/job_working_directory/000/4:ro -v /tmp/tmpu7x63f_i/job_working_directory/000/4/outputs:/tmp/tmpu7x63f_i/job_working_directory/000/4/outputs:rw -v "$_GALAXY_JOB_HOME_DIR:$_GALAXY_JOB_HOME_DIR:rw" -v /tmp/tmpu7x63f_i/job_working_directory/000/4/working:/tmp/tmpu7x63f_i/job_working_directory/000/4/working:rw -v /tmp/tmpu7x63f_i/files:/tmp/tmpu7x63f_i/files:ro -v /scratch/rico/galaxy/tool-data:/scratch/rico/galaxy/tool-data:ro --cpus ${GALAXY_SLOTS:-1} -w /tmp/tmpu7x63f_i/job_working_directory/000/4/working --rm --user 1028:1028 ncbi/fcs-adaptor:0.5.0 /bin/sh /tmp/tmpu7x63f_i/job_working_directory/000/4/tool_script.sh > '../outputs/tool_stdout' 2> '../outputs/tool_stderr'; return_code=$?; echo $return_code > /tmp/tmpu7x63f_i/job_working_directory/000/4/galaxy_4.ec; if [ -f "/tmp/tmpu7x63f_i/job_working_directory/000/4/working/fcs_adaptor_report.txt" ] ; then cp "/tmp/tmpu7x63f_i/job_working_directory/000/4/working/fcs_adaptor_report.txt" "/tmp/tmpu7x63f_i/job_working_directory/000/4/outputs/dataset_5bd87a72-fbff-4e4a-a27a-aa9a07b645ae.dat" ; fi; if [ -f "/tmp/tmpu7x63f_i/job_working_directory/000/4/working/cleaned_sequences/"*".dat" ] ; then cp "/tmp/tmpu7x63f_i/job_working_directory/000/4/working/cleaned_sequences/"*".dat" "/tmp/tmpu7x63f_i/job_working_directory/000/4/outputs/dataset_2556b660-7d40-4c96-ae9b-4e54b5c33132.dat" ; fi; if [ -f "/tmp/tmpu7x63f_i/job_working_directory/000/4/working/fcs_adaptor.log" ] ; then cp "/tmp/tmpu7x63f_i/job_working_directory/000/4/working/fcs_adaptor.log" "/tmp/tmpu7x63f_i/job_working_directory/000/4/outputs/dataset_8294ec1f-feb6-4427-822b-0d653c89d82d.dat" ; fi; if [ -f "/tmp/tmpu7x63f_i/job_working_directory/000/4/working/validate_fasta.txt" ] ; then cp "/tmp/tmpu7x63f_i/job_working_directory/000/4/working/validate_fasta.txt" "/tmp/tmpu7x63f_i/job_working_directory/000/4/outputs/dataset_664ec871-210e-4cf1-867e-c67d8419c064.dat" ; fi; cd '/tmp/tmpu7x63f_i/job_working_directory/000/4'; [ "$GALAXY_VIRTUAL_ENV" = "None" ] && GALAXY_VIRTUAL_ENV="$_GALAXY_VIRTUAL_ENV"; _galaxy_setup_environment True; python metadata/set.py; sh -c "exit $return_code" galaxy.jobs.runners.local DEBUG 2024-02-23 13:25:58,850 [pN:main.1,p:76310,tN:LocalRunner.work_thread-3] (4) executing job script: /tmp/tmpu7x63f_i/job_working_directory/000/4/galaxy_4.sh urllib3.connectionpool DEBUG 2024-02-23 13:25:59,197: Starting new HTTP connection (1): localhost:39427 urllib3.connectionpool DEBUG 2024-02-23 13:25:59,228: http://localhost:39427 "GET /api/jobs/92ca5dfeb6970722 HTTP/1.1" 200 1245 urllib3.connectionpool DEBUG 2024-02-23 13:25:59,482: Starting new HTTP connection (1): localhost:39427 urllib3.connectionpool DEBUG 2024-02-23 13:25:59,516: http://localhost:39427 "GET /api/jobs/92ca5dfeb6970722 HTTP/1.1" 200 1245 urllib3.connectionpool DEBUG 2024-02-23 13:25:59,770: Starting new HTTP connection (1): localhost:39427 urllib3.connectionpool DEBUG 2024-02-23 13:25:59,800: http://localhost:39427 "GET /api/jobs/92ca5dfeb6970722 HTTP/1.1" 200 1245 urllib3.connectionpool DEBUG 2024-02-23 13:26:00,054: Starting new HTTP connection (1): localhost:39427 urllib3.connectionpool DEBUG 2024-02-23 13:26:00,087: http://localhost:39427 "GET /api/jobs/92ca5dfeb6970722 HTTP/1.1" 200 1245 urllib3.connectionpool DEBUG 2024-02-23 13:26:00,341: Starting new HTTP connection (1): localhost:39427 urllib3.connectionpool DEBUG 2024-02-23 13:26:00,370: http://localhost:39427 "GET /api/jobs/92ca5dfeb6970722 HTTP/1.1" 200 1245 urllib3.connectionpool DEBUG 2024-02-23 13:26:00,624: Starting new HTTP connection (1): localhost:39427 urllib3.connectionpool DEBUG 2024-02-23 13:26:00,651: http://localhost:39427 "GET /api/jobs/92ca5dfeb6970722 HTTP/1.1" 200 1245 urllib3.connectionpool DEBUG 2024-02-23 13:26:00,905: Starting new HTTP connection (1): localhost:39427 urllib3.connectionpool DEBUG 2024-02-23 13:26:00,931: http://localhost:39427 "GET /api/jobs/92ca5dfeb6970722 HTTP/1.1" 200 1245 urllib3.connectionpool DEBUG 2024-02-23 13:26:01,185: Starting new HTTP connection (1): localhost:39427 urllib3.connectionpool DEBUG 2024-02-23 13:26:01,217: http://localhost:39427 "GET /api/jobs/92ca5dfeb6970722 HTTP/1.1" 200 1245 urllib3.connectionpool DEBUG 2024-02-23 13:26:01,471: Starting new HTTP connection (1): localhost:39427 urllib3.connectionpool DEBUG 2024-02-23 13:26:01,501: http://localhost:39427 "GET /api/jobs/92ca5dfeb6970722 HTTP/1.1" 200 1245 urllib3.connectionpool DEBUG 2024-02-23 13:26:01,754: Starting new HTTP connection (1): localhost:39427 urllib3.connectionpool DEBUG 2024-02-23 13:26:01,782: http://localhost:39427 "GET /api/jobs/92ca5dfeb6970722 HTTP/1.1" 200 1245 urllib3.connectionpool DEBUG 2024-02-23 13:26:02,036: Starting new HTTP connection (1): localhost:39427 urllib3.connectionpool DEBUG 2024-02-23 13:26:02,062: http://localhost:39427 "GET /api/jobs/92ca5dfeb6970722 HTTP/1.1" 200 1245 urllib3.connectionpool DEBUG 2024-02-23 13:26:02,316: Starting new HTTP connection (1): localhost:39427 urllib3.connectionpool DEBUG 2024-02-23 13:26:02,342: http://localhost:39427 "GET /api/jobs/92ca5dfeb6970722 HTTP/1.1" 200 1245 urllib3.connectionpool DEBUG 2024-02-23 13:26:02,595: Starting new HTTP connection (1): localhost:39427 urllib3.connectionpool DEBUG 2024-02-23 13:26:02,628: http://localhost:39427 "GET /api/jobs/92ca5dfeb6970722 HTTP/1.1" 200 1245 urllib3.connectionpool DEBUG 2024-02-23 13:26:02,882: Starting new HTTP connection (1): localhost:39427 urllib3.connectionpool DEBUG 2024-02-23 13:26:02,907: http://localhost:39427 "GET /api/jobs/92ca5dfeb6970722 HTTP/1.1" 200 1245 urllib3.connectionpool DEBUG 2024-02-23 13:26:03,161: Starting new HTTP connection (1): localhost:39427 urllib3.connectionpool DEBUG 2024-02-23 13:26:03,188: http://localhost:39427 "GET /api/jobs/92ca5dfeb6970722 HTTP/1.1" 200 1245 urllib3.connectionpool DEBUG 2024-02-23 13:26:03,441: Starting new HTTP connection (1): localhost:39427 urllib3.connectionpool DEBUG 2024-02-23 13:26:03,473: http://localhost:39427 "GET /api/jobs/92ca5dfeb6970722 HTTP/1.1" 200 1245 urllib3.connectionpool DEBUG 2024-02-23 13:26:03,727: Starting new HTTP connection (1): localhost:39427 urllib3.connectionpool DEBUG 2024-02-23 13:26:03,759: http://localhost:39427 "GET /api/jobs/92ca5dfeb6970722 HTTP/1.1" 200 1245 urllib3.connectionpool DEBUG 2024-02-23 13:26:04,013: Starting new HTTP connection (1): localhost:39427 urllib3.connectionpool DEBUG 2024-02-23 13:26:04,040: http://localhost:39427 "GET /api/jobs/92ca5dfeb6970722 HTTP/1.1" 200 1245 urllib3.connectionpool DEBUG 2024-02-23 13:26:04,294: Starting new HTTP connection (1): localhost:39427 urllib3.connectionpool DEBUG 2024-02-23 13:26:04,320: http://localhost:39427 "GET /api/jobs/92ca5dfeb6970722 HTTP/1.1" 200 1245 urllib3.connectionpool DEBUG 2024-02-23 13:26:04,574: Starting new HTTP connection (1): localhost:39427 urllib3.connectionpool DEBUG 2024-02-23 13:26:04,601: http://localhost:39427 "GET /api/jobs/92ca5dfeb6970722 HTTP/1.1" 200 1245 urllib3.connectionpool DEBUG 2024-02-23 13:26:04,855: Starting new HTTP connection (1): localhost:39427 urllib3.connectionpool DEBUG 2024-02-23 13:26:04,883: http://localhost:39427 "GET /api/jobs/92ca5dfeb6970722 HTTP/1.1" 200 1245 urllib3.connectionpool DEBUG 2024-02-23 13:26:05,137: Starting new HTTP connection (1): localhost:39427 urllib3.connectionpool DEBUG 2024-02-23 13:26:05,164: http://localhost:39427 "GET /api/jobs/92ca5dfeb6970722 HTTP/1.1" 200 1245 urllib3.connectionpool DEBUG 2024-02-23 13:26:05,418: Starting new HTTP connection (1): localhost:39427 urllib3.connectionpool DEBUG 2024-02-23 13:26:05,445: http://localhost:39427 "GET /api/jobs/92ca5dfeb6970722 HTTP/1.1" 200 1245 urllib3.connectionpool DEBUG 2024-02-23 13:26:05,699: Starting new HTTP connection (1): localhost:39427 urllib3.connectionpool DEBUG 2024-02-23 13:26:05,727: http://localhost:39427 "GET /api/jobs/92ca5dfeb6970722 HTTP/1.1" 200 1245 urllib3.connectionpool DEBUG 2024-02-23 13:26:05,980: Starting new HTTP connection (1): localhost:39427 urllib3.connectionpool DEBUG 2024-02-23 13:26:06,007: http://localhost:39427 "GET /api/jobs/92ca5dfeb6970722 HTTP/1.1" 200 1245 urllib3.connectionpool DEBUG 2024-02-23 13:26:06,261: Starting new HTTP connection (1): localhost:39427 urllib3.connectionpool DEBUG 2024-02-23 13:26:06,287: http://localhost:39427 "GET /api/jobs/92ca5dfeb6970722 HTTP/1.1" 200 1245 urllib3.connectionpool DEBUG 2024-02-23 13:26:06,540: Starting new HTTP connection (1): localhost:39427 urllib3.connectionpool DEBUG 2024-02-23 13:26:06,568: http://localhost:39427 "GET /api/jobs/92ca5dfeb6970722 HTTP/1.1" 200 1245 urllib3.connectionpool DEBUG 2024-02-23 13:26:06,822: Starting new HTTP connection (1): localhost:39427 urllib3.connectionpool DEBUG 2024-02-23 13:26:06,864: http://localhost:39427 "GET /api/jobs/92ca5dfeb6970722 HTTP/1.1" 200 1245 urllib3.connectionpool DEBUG 2024-02-23 13:26:07,118: Starting new HTTP connection (1): localhost:39427 urllib3.connectionpool DEBUG 2024-02-23 13:26:07,147: http://localhost:39427 "GET /api/jobs/92ca5dfeb6970722 HTTP/1.1" 200 1245 urllib3.connectionpool DEBUG 2024-02-23 13:26:07,401: Starting new HTTP connection (1): localhost:39427 urllib3.connectionpool DEBUG 2024-02-23 13:26:07,428: http://localhost:39427 "GET /api/jobs/92ca5dfeb6970722 HTTP/1.1" 200 1245 urllib3.connectionpool DEBUG 2024-02-23 13:26:07,681: Starting new HTTP connection (1): localhost:39427 urllib3.connectionpool DEBUG 2024-02-23 13:26:07,707: http://localhost:39427 "GET /api/jobs/92ca5dfeb6970722 HTTP/1.1" 200 1245 urllib3.connectionpool DEBUG 2024-02-23 13:26:07,960: Starting new HTTP connection (1): localhost:39427 urllib3.connectionpool DEBUG 2024-02-23 13:26:07,988: http://localhost:39427 "GET /api/jobs/92ca5dfeb6970722 HTTP/1.1" 200 1245 urllib3.connectionpool DEBUG 2024-02-23 13:26:08,242: Starting new HTTP connection (1): localhost:39427 urllib3.connectionpool DEBUG 2024-02-23 13:26:08,269: http://localhost:39427 "GET /api/jobs/92ca5dfeb6970722 HTTP/1.1" 200 1245 urllib3.connectionpool DEBUG 2024-02-23 13:26:08,523: Starting new HTTP connection (1): localhost:39427 urllib3.connectionpool DEBUG 2024-02-23 13:26:08,551: http://localhost:39427 "GET /api/jobs/92ca5dfeb6970722 HTTP/1.1" 200 1245 urllib3.connectionpool DEBUG 2024-02-23 13:26:08,805: Starting new HTTP connection (1): localhost:39427 urllib3.connectionpool DEBUG 2024-02-23 13:26:08,836: http://localhost:39427 "GET /api/jobs/92ca5dfeb6970722 HTTP/1.1" 200 1245 urllib3.connectionpool DEBUG 2024-02-23 13:26:09,090: Starting new HTTP connection (1): localhost:39427 urllib3.connectionpool DEBUG 2024-02-23 13:26:09,115: http://localhost:39427 "GET /api/jobs/92ca5dfeb6970722 HTTP/1.1" 200 1245 urllib3.connectionpool DEBUG 2024-02-23 13:26:09,369: Starting new HTTP connection (1): localhost:39427 urllib3.connectionpool DEBUG 2024-02-23 13:26:09,395: http://localhost:39427 "GET /api/jobs/92ca5dfeb6970722 HTTP/1.1" 200 1245 urllib3.connectionpool DEBUG 2024-02-23 13:26:09,649: Starting new HTTP connection (1): localhost:39427 urllib3.connectionpool DEBUG 2024-02-23 13:26:09,691: http://localhost:39427 "GET /api/jobs/92ca5dfeb6970722 HTTP/1.1" 200 1245 urllib3.connectionpool DEBUG 2024-02-23 13:26:09,945: Starting new HTTP connection (1): localhost:39427 urllib3.connectionpool DEBUG 2024-02-23 13:26:09,972: http://localhost:39427 "GET /api/jobs/92ca5dfeb6970722 HTTP/1.1" 200 1245 urllib3.connectionpool DEBUG 2024-02-23 13:26:10,225: Starting new HTTP connection (1): localhost:39427 urllib3.connectionpool DEBUG 2024-02-23 13:26:10,252: http://localhost:39427 "GET /api/jobs/92ca5dfeb6970722 HTTP/1.1" 200 1245 urllib3.connectionpool DEBUG 2024-02-23 13:26:10,506: Starting new HTTP connection (1): localhost:39427 urllib3.connectionpool DEBUG 2024-02-23 13:26:10,541: http://localhost:39427 "GET /api/jobs/92ca5dfeb6970722 HTTP/1.1" 200 1245 urllib3.connectionpool DEBUG 2024-02-23 13:26:10,795: Starting new HTTP connection (1): localhost:39427 urllib3.connectionpool DEBUG 2024-02-23 13:26:10,824: http://localhost:39427 "GET /api/jobs/92ca5dfeb6970722 HTTP/1.1" 200 1245 urllib3.connectionpool DEBUG 2024-02-23 13:26:11,077: Starting new HTTP connection (1): localhost:39427 urllib3.connectionpool DEBUG 2024-02-23 13:26:11,103: http://localhost:39427 "GET /api/jobs/92ca5dfeb6970722 HTTP/1.1" 200 1245 urllib3.connectionpool DEBUG 2024-02-23 13:26:11,357: Starting new HTTP connection (1): localhost:39427 urllib3.connectionpool DEBUG 2024-02-23 13:26:11,384: http://localhost:39427 "GET /api/jobs/92ca5dfeb6970722 HTTP/1.1" 200 1245 urllib3.connectionpool DEBUG 2024-02-23 13:26:11,638: Starting new HTTP connection (1): localhost:39427 urllib3.connectionpool DEBUG 2024-02-23 13:26:11,666: http://localhost:39427 "GET /api/jobs/92ca5dfeb6970722 HTTP/1.1" 200 1245 urllib3.connectionpool DEBUG 2024-02-23 13:26:11,919: Starting new HTTP connection (1): localhost:39427 urllib3.connectionpool DEBUG 2024-02-23 13:26:11,947: http://localhost:39427 "GET /api/jobs/92ca5dfeb6970722 HTTP/1.1" 200 1245 urllib3.connectionpool DEBUG 2024-02-23 13:26:12,201: Starting new HTTP connection (1): localhost:39427 urllib3.connectionpool DEBUG 2024-02-23 13:26:12,228: http://localhost:39427 "GET /api/jobs/92ca5dfeb6970722 HTTP/1.1" 200 1245 urllib3.connectionpool DEBUG 2024-02-23 13:26:12,482: Starting new HTTP connection (1): localhost:39427 urllib3.connectionpool DEBUG 2024-02-23 13:26:12,510: http://localhost:39427 "GET /api/jobs/92ca5dfeb6970722 HTTP/1.1" 200 1245 urllib3.connectionpool DEBUG 2024-02-23 13:26:12,763: Starting new HTTP connection (1): localhost:39427 urllib3.connectionpool DEBUG 2024-02-23 13:26:12,802: http://localhost:39427 "GET /api/jobs/92ca5dfeb6970722 HTTP/1.1" 200 1245 urllib3.connectionpool DEBUG 2024-02-23 13:26:13,056: Starting new HTTP connection (1): localhost:39427 urllib3.connectionpool DEBUG 2024-02-23 13:26:13,084: http://localhost:39427 "GET /api/jobs/92ca5dfeb6970722 HTTP/1.1" 200 1245 urllib3.connectionpool DEBUG 2024-02-23 13:26:13,338: Starting new HTTP connection (1): localhost:39427 urllib3.connectionpool DEBUG 2024-02-23 13:26:13,366: http://localhost:39427 "GET /api/jobs/92ca5dfeb6970722 HTTP/1.1" 200 1245 urllib3.connectionpool DEBUG 2024-02-23 13:26:13,620: Starting new HTTP connection (1): localhost:39427 urllib3.connectionpool DEBUG 2024-02-23 13:26:13,647: http://localhost:39427 "GET /api/jobs/92ca5dfeb6970722 HTTP/1.1" 200 1245 urllib3.connectionpool DEBUG 2024-02-23 13:26:13,900: Starting new HTTP connection (1): localhost:39427 urllib3.connectionpool DEBUG 2024-02-23 13:26:13,932: http://localhost:39427 "GET /api/jobs/92ca5dfeb6970722 HTTP/1.1" 200 1245 urllib3.connectionpool DEBUG 2024-02-23 13:26:14,186: Starting new HTTP connection (1): localhost:39427 urllib3.connectionpool DEBUG 2024-02-23 13:26:14,213: http://localhost:39427 "GET /api/jobs/92ca5dfeb6970722 HTTP/1.1" 200 1245 urllib3.connectionpool DEBUG 2024-02-23 13:26:14,467: Starting new HTTP connection (1): localhost:39427 urllib3.connectionpool DEBUG 2024-02-23 13:26:14,493: http://localhost:39427 "GET /api/jobs/92ca5dfeb6970722 HTTP/1.1" 200 1245 urllib3.connectionpool DEBUG 2024-02-23 13:26:14,747: Starting new HTTP connection (1): localhost:39427 urllib3.connectionpool DEBUG 2024-02-23 13:26:14,779: http://localhost:39427 "GET /api/jobs/92ca5dfeb6970722 HTTP/1.1" 200 1245 urllib3.connectionpool DEBUG 2024-02-23 13:26:15,032: Starting new HTTP connection (1): localhost:39427 urllib3.connectionpool DEBUG 2024-02-23 13:26:15,059: http://localhost:39427 "GET /api/jobs/92ca5dfeb6970722 HTTP/1.1" 200 1245 urllib3.connectionpool DEBUG 2024-02-23 13:26:15,313: Starting new HTTP connection (1): localhost:39427 urllib3.connectionpool DEBUG 2024-02-23 13:26:15,339: http://localhost:39427 "GET /api/jobs/92ca5dfeb6970722 HTTP/1.1" 200 1245 urllib3.connectionpool DEBUG 2024-02-23 13:26:15,593: Starting new HTTP connection (1): localhost:39427 urllib3.connectionpool DEBUG 2024-02-23 13:26:15,621: http://localhost:39427 "GET /api/jobs/92ca5dfeb6970722 HTTP/1.1" 200 1245 urllib3.connectionpool DEBUG 2024-02-23 13:26:15,875: Starting new HTTP connection (1): localhost:39427 urllib3.connectionpool DEBUG 2024-02-23 13:26:15,903: http://localhost:39427 "GET /api/jobs/92ca5dfeb6970722 HTTP/1.1" 200 1245 urllib3.connectionpool DEBUG 2024-02-23 13:26:16,157: Starting new HTTP connection (1): localhost:39427 urllib3.connectionpool DEBUG 2024-02-23 13:26:16,184: http://localhost:39427 "GET /api/jobs/92ca5dfeb6970722 HTTP/1.1" 200 1245 urllib3.connectionpool DEBUG 2024-02-23 13:26:16,437: Starting new HTTP connection (1): localhost:39427 urllib3.connectionpool DEBUG 2024-02-23 13:26:16,464: http://localhost:39427 "GET /api/jobs/92ca5dfeb6970722 HTTP/1.1" 200 1245 urllib3.connectionpool DEBUG 2024-02-23 13:26:16,717: Starting new HTTP connection (1): localhost:39427 urllib3.connectionpool DEBUG 2024-02-23 13:26:16,749: http://localhost:39427 "GET /api/jobs/92ca5dfeb6970722 HTTP/1.1" 200 1245 urllib3.connectionpool DEBUG 2024-02-23 13:26:17,003: Starting new HTTP connection (1): localhost:39427 urllib3.connectionpool DEBUG 2024-02-23 13:26:17,030: http://localhost:39427 "GET /api/jobs/92ca5dfeb6970722 HTTP/1.1" 200 1245 urllib3.connectionpool DEBUG 2024-02-23 13:26:17,284: Starting new HTTP connection (1): localhost:39427 urllib3.connectionpool DEBUG 2024-02-23 13:26:17,318: http://localhost:39427 "GET /api/jobs/92ca5dfeb6970722 HTTP/1.1" 200 1245 urllib3.connectionpool DEBUG 2024-02-23 13:26:17,571: Starting new HTTP connection (1): localhost:39427 urllib3.connectionpool DEBUG 2024-02-23 13:26:17,598: http://localhost:39427 "GET /api/jobs/92ca5dfeb6970722 HTTP/1.1" 200 1245 urllib3.connectionpool DEBUG 2024-02-23 13:26:17,852: Starting new HTTP connection (1): localhost:39427 urllib3.connectionpool DEBUG 2024-02-23 13:26:17,878: http://localhost:39427 "GET /api/jobs/92ca5dfeb6970722 HTTP/1.1" 200 1245 urllib3.connectionpool DEBUG 2024-02-23 13:26:18,132: Starting new HTTP connection (1): localhost:39427 urllib3.connectionpool DEBUG 2024-02-23 13:26:18,158: http://localhost:39427 "GET /api/jobs/92ca5dfeb6970722 HTTP/1.1" 200 1245 urllib3.connectionpool DEBUG 2024-02-23 13:26:18,412: Starting new HTTP connection (1): localhost:39427 urllib3.connectionpool DEBUG 2024-02-23 13:26:18,438: http://localhost:39427 "GET /api/jobs/92ca5dfeb6970722 HTTP/1.1" 200 1245 urllib3.connectionpool DEBUG 2024-02-23 13:26:18,692: Starting new HTTP connection (1): localhost:39427 urllib3.connectionpool DEBUG 2024-02-23 13:26:18,724: http://localhost:39427 "GET /api/jobs/92ca5dfeb6970722 HTTP/1.1" 200 1245 urllib3.connectionpool DEBUG 2024-02-23 13:26:18,978: Starting new HTTP connection (1): localhost:39427 urllib3.connectionpool DEBUG 2024-02-23 13:26:19,004: http://localhost:39427 "GET /api/jobs/92ca5dfeb6970722 HTTP/1.1" 200 1245 urllib3.connectionpool DEBUG 2024-02-23 13:26:19,257: Starting new HTTP connection (1): localhost:39427 urllib3.connectionpool DEBUG 2024-02-23 13:26:19,285: http://localhost:39427 "GET /api/jobs/92ca5dfeb6970722 HTTP/1.1" 200 1245 urllib3.connectionpool DEBUG 2024-02-23 13:26:19,539: Starting new HTTP connection (1): localhost:39427 urllib3.connectionpool DEBUG 2024-02-23 13:26:19,565: http://localhost:39427 "GET /api/jobs/92ca5dfeb6970722 HTTP/1.1" 200 1245 urllib3.connectionpool DEBUG 2024-02-23 13:26:19,819: Starting new HTTP connection (1): localhost:39427 urllib3.connectionpool DEBUG 2024-02-23 13:26:19,849: http://localhost:39427 "GET /api/jobs/92ca5dfeb6970722 HTTP/1.1" 200 1245 urllib3.connectionpool DEBUG 2024-02-23 13:26:20,103: Starting new HTTP connection (1): localhost:39427 urllib3.connectionpool DEBUG 2024-02-23 13:26:20,144: http://localhost:39427 "GET /api/jobs/92ca5dfeb6970722 HTTP/1.1" 200 1245 urllib3.connectionpool DEBUG 2024-02-23 13:26:20,398: Starting new HTTP connection (1): localhost:39427 urllib3.connectionpool DEBUG 2024-02-23 13:26:20,425: http://localhost:39427 "GET /api/jobs/92ca5dfeb6970722 HTTP/1.1" 200 1245 urllib3.connectionpool DEBUG 2024-02-23 13:26:20,678: Starting new HTTP connection (1): localhost:39427 urllib3.connectionpool DEBUG 2024-02-23 13:26:20,711: http://localhost:39427 "GET /api/jobs/92ca5dfeb6970722 HTTP/1.1" 200 1245 urllib3.connectionpool DEBUG 2024-02-23 13:26:20,965: Starting new HTTP connection (1): localhost:39427 urllib3.connectionpool DEBUG 2024-02-23 13:26:20,990: http://localhost:39427 "GET /api/jobs/92ca5dfeb6970722 HTTP/1.1" 200 1245 urllib3.connectionpool DEBUG 2024-02-23 13:26:21,244: Starting new HTTP connection (1): localhost:39427 urllib3.connectionpool DEBUG 2024-02-23 13:26:21,270: http://localhost:39427 "GET /api/jobs/92ca5dfeb6970722 HTTP/1.1" 200 1245 urllib3.connectionpool DEBUG 2024-02-23 13:26:21,524: Starting new HTTP connection (1): localhost:39427 urllib3.connectionpool DEBUG 2024-02-23 13:26:21,550: http://localhost:39427 "GET /api/jobs/92ca5dfeb6970722 HTTP/1.1" 200 1245 urllib3.connectionpool DEBUG 2024-02-23 13:26:21,804: Starting new HTTP connection (1): localhost:39427 urllib3.connectionpool DEBUG 2024-02-23 13:26:21,835: http://localhost:39427 "GET /api/jobs/92ca5dfeb6970722 HTTP/1.1" 200 1245 urllib3.connectionpool DEBUG 2024-02-23 13:26:22,089: Starting new HTTP connection (1): localhost:39427 urllib3.connectionpool DEBUG 2024-02-23 13:26:22,115: http://localhost:39427 "GET /api/jobs/92ca5dfeb6970722 HTTP/1.1" 200 1245 urllib3.connectionpool DEBUG 2024-02-23 13:26:22,369: Starting new HTTP connection (1): localhost:39427 urllib3.connectionpool DEBUG 2024-02-23 13:26:22,398: http://localhost:39427 "GET /api/jobs/92ca5dfeb6970722 HTTP/1.1" 200 1245 urllib3.connectionpool DEBUG 2024-02-23 13:26:22,652: Starting new HTTP connection (1): localhost:39427 urllib3.connectionpool DEBUG 2024-02-23 13:26:22,682: http://localhost:39427 "GET /api/jobs/92ca5dfeb6970722 HTTP/1.1" 200 1245 urllib3.connectionpool DEBUG 2024-02-23 13:26:22,936: Starting new HTTP connection (1): localhost:39427 urllib3.connectionpool DEBUG 2024-02-23 13:26:22,962: http://localhost:39427 "GET /api/jobs/92ca5dfeb6970722 HTTP/1.1" 200 1245 urllib3.connectionpool DEBUG 2024-02-23 13:26:23,215: Starting new HTTP connection (1): localhost:39427 urllib3.connectionpool DEBUG 2024-02-23 13:26:23,241: http://localhost:39427 "GET /api/jobs/92ca5dfeb6970722 HTTP/1.1" 200 1245 urllib3.connectionpool DEBUG 2024-02-23 13:26:23,495: Starting new HTTP connection (1): localhost:39427 urllib3.connectionpool DEBUG 2024-02-23 13:26:23,521: http://localhost:39427 "GET /api/jobs/92ca5dfeb6970722 HTTP/1.1" 200 1245 urllib3.connectionpool DEBUG 2024-02-23 13:26:23,775: Starting new HTTP connection (1): localhost:39427 urllib3.connectionpool DEBUG 2024-02-23 13:26:23,802: http://localhost:39427 "GET /api/jobs/92ca5dfeb6970722 HTTP/1.1" 200 1245 urllib3.connectionpool DEBUG 2024-02-23 13:26:24,056: Starting new HTTP connection (1): localhost:39427 urllib3.connectionpool DEBUG 2024-02-23 13:26:24,083: http://localhost:39427 "GET /api/jobs/92ca5dfeb6970722 HTTP/1.1" 200 1245 urllib3.connectionpool DEBUG 2024-02-23 13:26:24,336: Starting new HTTP connection (1): localhost:39427 urllib3.connectionpool DEBUG 2024-02-23 13:26:24,362: http://localhost:39427 "GET /api/jobs/92ca5dfeb6970722 HTTP/1.1" 200 1245 urllib3.connectionpool DEBUG 2024-02-23 13:26:24,616: Starting new HTTP connection (1): localhost:39427 urllib3.connectionpool DEBUG 2024-02-23 13:26:24,647: http://localhost:39427 "GET /api/jobs/92ca5dfeb6970722 HTTP/1.1" 200 1245 urllib3.connectionpool DEBUG 2024-02-23 13:26:24,900: Starting new HTTP connection (1): localhost:39427 urllib3.connectionpool DEBUG 2024-02-23 13:26:24,929: http://localhost:39427 "GET /api/jobs/92ca5dfeb6970722 HTTP/1.1" 200 1245 urllib3.connectionpool DEBUG 2024-02-23 13:26:25,183: Starting new HTTP connection (1): localhost:39427 urllib3.connectionpool DEBUG 2024-02-23 13:26:25,210: http://localhost:39427 "GET /api/jobs/92ca5dfeb6970722 HTTP/1.1" 200 1245 urllib3.connectionpool DEBUG 2024-02-23 13:26:25,464: Starting new HTTP connection (1): localhost:39427 urllib3.connectionpool DEBUG 2024-02-23 13:26:25,490: http://localhost:39427 "GET /api/jobs/92ca5dfeb6970722 HTTP/1.1" 200 1245 urllib3.connectionpool DEBUG 2024-02-23 13:26:25,744: Starting new HTTP connection (1): localhost:39427 urllib3.connectionpool DEBUG 2024-02-23 13:26:25,770: http://localhost:39427 "GET /api/jobs/92ca5dfeb6970722 HTTP/1.1" 200 1245 urllib3.connectionpool DEBUG 2024-02-23 13:26:26,024: Starting new HTTP connection (1): localhost:39427 urllib3.connectionpool DEBUG 2024-02-23 13:26:26,050: http://localhost:39427 "GET /api/jobs/92ca5dfeb6970722 HTTP/1.1" 200 1245 urllib3.connectionpool DEBUG 2024-02-23 13:26:26,304: Starting new HTTP connection (1): localhost:39427 urllib3.connectionpool DEBUG 2024-02-23 13:26:26,331: http://localhost:39427 "GET /api/jobs/92ca5dfeb6970722 HTTP/1.1" 200 1245 urllib3.connectionpool DEBUG 2024-02-23 13:26:26,585: Starting new HTTP connection (1): localhost:39427 urllib3.connectionpool DEBUG 2024-02-23 13:26:26,611: http://localhost:39427 "GET /api/jobs/92ca5dfeb6970722 HTTP/1.1" 200 1245 urllib3.connectionpool DEBUG 2024-02-23 13:26:26,864: Starting new HTTP connection (1): localhost:39427 urllib3.connectionpool DEBUG 2024-02-23 13:26:26,892: http://localhost:39427 "GET /api/jobs/92ca5dfeb6970722 HTTP/1.1" 200 1245 urllib3.connectionpool DEBUG 2024-02-23 13:26:27,146: Starting new HTTP connection (1): localhost:39427 urllib3.connectionpool DEBUG 2024-02-23 13:26:27,172: http://localhost:39427 "GET /api/jobs/92ca5dfeb6970722 HTTP/1.1" 200 1245 urllib3.connectionpool DEBUG 2024-02-23 13:26:27,426: Starting new HTTP connection (1): localhost:39427 urllib3.connectionpool DEBUG 2024-02-23 13:26:27,453: http://localhost:39427 "GET /api/jobs/92ca5dfeb6970722 HTTP/1.1" 200 1245 urllib3.connectionpool DEBUG 2024-02-23 13:26:27,707: Starting new HTTP connection (1): localhost:39427 urllib3.connectionpool DEBUG 2024-02-23 13:26:27,738: http://localhost:39427 "GET /api/jobs/92ca5dfeb6970722 HTTP/1.1" 200 1245 urllib3.connectionpool DEBUG 2024-02-23 13:26:27,991: Starting new HTTP connection (1): localhost:39427 urllib3.connectionpool DEBUG 2024-02-23 13:26:28,020: http://localhost:39427 "GET /api/jobs/92ca5dfeb6970722 HTTP/1.1" 200 1245 urllib3.connectionpool DEBUG 2024-02-23 13:26:28,273: Starting new HTTP connection (1): localhost:39427 urllib3.connectionpool DEBUG 2024-02-23 13:26:28,312: http://localhost:39427 "GET /api/jobs/92ca5dfeb6970722 HTTP/1.1" 200 1245 urllib3.connectionpool DEBUG 2024-02-23 13:26:28,566: Starting new HTTP connection (1): localhost:39427 urllib3.connectionpool DEBUG 2024-02-23 13:26:28,595: http://localhost:39427 "GET /api/jobs/92ca5dfeb6970722 HTTP/1.1" 200 1245 urllib3.connectionpool DEBUG 2024-02-23 13:26:28,849: Starting new HTTP connection (1): localhost:39427 urllib3.connectionpool DEBUG 2024-02-23 13:26:28,876: http://localhost:39427 "GET /api/jobs/92ca5dfeb6970722 HTTP/1.1" 200 1245 urllib3.connectionpool DEBUG 2024-02-23 13:26:29,129: Starting new HTTP connection (1): localhost:39427 urllib3.connectionpool DEBUG 2024-02-23 13:26:29,162: http://localhost:39427 "GET /api/jobs/92ca5dfeb6970722 HTTP/1.1" 200 1245 urllib3.connectionpool DEBUG 2024-02-23 13:26:29,416: Starting new HTTP connection (1): localhost:39427 urllib3.connectionpool DEBUG 2024-02-23 13:26:29,441: http://localhost:39427 "GET /api/jobs/92ca5dfeb6970722 HTTP/1.1" 200 1245 urllib3.connectionpool DEBUG 2024-02-23 13:26:29,694: Starting new HTTP connection (1): localhost:39427 urllib3.connectionpool DEBUG 2024-02-23 13:26:29,730: http://localhost:39427 "GET /api/jobs/92ca5dfeb6970722 HTTP/1.1" 200 1245 urllib3.connectionpool DEBUG 2024-02-23 13:26:29,984: Starting new HTTP connection (1): localhost:39427 urllib3.connectionpool DEBUG 2024-02-23 13:26:30,011: http://localhost:39427 "GET /api/jobs/92ca5dfeb6970722 HTTP/1.1" 200 1245 urllib3.connectionpool DEBUG 2024-02-23 13:26:30,264: Starting new HTTP connection (1): localhost:39427 urllib3.connectionpool DEBUG 2024-02-23 13:26:30,305: http://localhost:39427 "GET /api/jobs/92ca5dfeb6970722 HTTP/1.1" 200 1245 urllib3.connectionpool DEBUG 2024-02-23 13:26:30,559: Starting new HTTP connection (1): localhost:39427 urllib3.connectionpool DEBUG 2024-02-23 13:26:30,589: http://localhost:39427 "GET /api/jobs/92ca5dfeb6970722 HTTP/1.1" 200 1245 urllib3.connectionpool DEBUG 2024-02-23 13:26:30,843: Starting new HTTP connection (1): localhost:39427 urllib3.connectionpool DEBUG 2024-02-23 13:26:30,870: http://localhost:39427 "GET /api/jobs/92ca5dfeb6970722 HTTP/1.1" 200 1245 urllib3.connectionpool DEBUG 2024-02-23 13:26:31,124: Starting new HTTP connection (1): localhost:39427 urllib3.connectionpool DEBUG 2024-02-23 13:26:31,156: http://localhost:39427 "GET /api/jobs/92ca5dfeb6970722 HTTP/1.1" 200 1245 urllib3.connectionpool DEBUG 2024-02-23 13:26:31,410: Starting new HTTP connection (1): localhost:39427 urllib3.connectionpool DEBUG 2024-02-23 13:26:31,439: http://localhost:39427 "GET /api/jobs/92ca5dfeb6970722 HTTP/1.1" 200 1245 urllib3.connectionpool DEBUG 2024-02-23 13:26:31,693: Starting new HTTP connection (1): localhost:39427 urllib3.connectionpool DEBUG 2024-02-23 13:26:31,721: http://localhost:39427 "GET /api/jobs/92ca5dfeb6970722 HTTP/1.1" 200 1245 urllib3.connectionpool DEBUG 2024-02-23 13:26:31,975: Starting new HTTP connection (1): localhost:39427 urllib3.connectionpool DEBUG 2024-02-23 13:26:32,004: http://localhost:39427 "GET /api/jobs/92ca5dfeb6970722 HTTP/1.1" 200 1245 urllib3.connectionpool DEBUG 2024-02-23 13:26:32,258: Starting new HTTP connection (1): localhost:39427 urllib3.connectionpool DEBUG 2024-02-23 13:26:32,286: http://localhost:39427 "GET /api/jobs/92ca5dfeb6970722 HTTP/1.1" 200 1245 urllib3.connectionpool DEBUG 2024-02-23 13:26:32,540: Starting new HTTP connection (1): localhost:39427 urllib3.connectionpool DEBUG 2024-02-23 13:26:32,573: http://localhost:39427 "GET /api/jobs/92ca5dfeb6970722 HTTP/1.1" 200 1245 urllib3.connectionpool DEBUG 2024-02-23 13:26:32,827: Starting new HTTP connection (1): localhost:39427 urllib3.connectionpool DEBUG 2024-02-23 13:26:32,871: http://localhost:39427 "GET /api/jobs/92ca5dfeb6970722 HTTP/1.1" 200 1245 urllib3.connectionpool DEBUG 2024-02-23 13:26:33,125: Starting new HTTP connection (1): localhost:39427 urllib3.connectionpool DEBUG 2024-02-23 13:26:33,153: http://localhost:39427 "GET /api/jobs/92ca5dfeb6970722 HTTP/1.1" 200 1245 urllib3.connectionpool DEBUG 2024-02-23 13:26:33,407: Starting new HTTP connection (1): localhost:39427 urllib3.connectionpool DEBUG 2024-02-23 13:26:33,443: http://localhost:39427 "GET /api/jobs/92ca5dfeb6970722 HTTP/1.1" 200 1245 urllib3.connectionpool DEBUG 2024-02-23 13:26:33,697: Starting new HTTP connection (1): localhost:39427 urllib3.connectionpool DEBUG 2024-02-23 13:26:33,730: http://localhost:39427 "GET /api/jobs/92ca5dfeb6970722 HTTP/1.1" 200 1245 urllib3.connectionpool DEBUG 2024-02-23 13:26:33,984: Starting new HTTP connection (1): localhost:39427 urllib3.connectionpool DEBUG 2024-02-23 13:26:34,014: http://localhost:39427 "GET /api/jobs/92ca5dfeb6970722 HTTP/1.1" 200 1245 urllib3.connectionpool DEBUG 2024-02-23 13:26:34,268: Starting new HTTP connection (1): localhost:39427 urllib3.connectionpool DEBUG 2024-02-23 13:26:34,297: http://localhost:39427 "GET /api/jobs/92ca5dfeb6970722 HTTP/1.1" 200 1245 urllib3.connectionpool DEBUG 2024-02-23 13:26:34,551: Starting new HTTP connection (1): localhost:39427 urllib3.connectionpool DEBUG 2024-02-23 13:26:34,579: http://localhost:39427 "GET /api/jobs/92ca5dfeb6970722 HTTP/1.1" 200 1245 urllib3.connectionpool DEBUG 2024-02-23 13:26:34,833: Starting new HTTP connection (1): localhost:39427 urllib3.connectionpool DEBUG 2024-02-23 13:26:34,866: http://localhost:39427 "GET /api/jobs/92ca5dfeb6970722 HTTP/1.1" 200 1245 urllib3.connectionpool DEBUG 2024-02-23 13:26:35,120: Starting new HTTP connection (1): localhost:39427 urllib3.connectionpool DEBUG 2024-02-23 13:26:35,149: http://localhost:39427 "GET /api/jobs/92ca5dfeb6970722 HTTP/1.1" 200 1245 urllib3.connectionpool DEBUG 2024-02-23 13:26:35,403: Starting new HTTP connection (1): localhost:39427 urllib3.connectionpool DEBUG 2024-02-23 13:26:35,435: http://localhost:39427 "GET /api/jobs/92ca5dfeb6970722 HTTP/1.1" 200 1245 urllib3.connectionpool DEBUG 2024-02-23 13:26:35,689: Starting new HTTP connection (1): localhost:39427 urllib3.connectionpool DEBUG 2024-02-23 13:26:35,718: http://localhost:39427 "GET /api/jobs/92ca5dfeb6970722 HTTP/1.1" 200 1245 urllib3.connectionpool DEBUG 2024-02-23 13:26:35,972: Starting new HTTP connection (1): localhost:39427 urllib3.connectionpool DEBUG 2024-02-23 13:26:36,000: http://localhost:39427 "GET /api/jobs/92ca5dfeb6970722 HTTP/1.1" 200 1245 urllib3.connectionpool DEBUG 2024-02-23 13:26:36,254: Starting new HTTP connection (1): localhost:39427 urllib3.connectionpool DEBUG 2024-02-23 13:26:36,283: http://localhost:39427 "GET /api/jobs/92ca5dfeb6970722 HTTP/1.1" 200 1245 urllib3.connectionpool DEBUG 2024-02-23 13:26:36,537: Starting new HTTP connection (1): localhost:39427 urllib3.connectionpool DEBUG 2024-02-23 13:26:36,569: http://localhost:39427 "GET /api/jobs/92ca5dfeb6970722 HTTP/1.1" 200 1245 urllib3.connectionpool DEBUG 2024-02-23 13:26:36,823: Starting new HTTP connection (1): localhost:39427 urllib3.connectionpool DEBUG 2024-02-23 13:26:36,862: http://localhost:39427 "GET /api/jobs/92ca5dfeb6970722 HTTP/1.1" 200 1245 urllib3.connectionpool DEBUG 2024-02-23 13:26:37,116: Starting new HTTP connection (1): localhost:39427 urllib3.connectionpool DEBUG 2024-02-23 13:26:37,149: http://localhost:39427 "GET /api/jobs/92ca5dfeb6970722 HTTP/1.1" 200 1245 urllib3.connectionpool DEBUG 2024-02-23 13:26:37,403: Starting new HTTP connection (1): localhost:39427 urllib3.connectionpool DEBUG 2024-02-23 13:26:37,433: http://localhost:39427 "GET /api/jobs/92ca5dfeb6970722 HTTP/1.1" 200 1245 urllib3.connectionpool DEBUG 2024-02-23 13:26:37,686: Starting new HTTP connection (1): localhost:39427 urllib3.connectionpool DEBUG 2024-02-23 13:26:37,716: http://localhost:39427 "GET /api/jobs/92ca5dfeb6970722 HTTP/1.1" 200 1245 urllib3.connectionpool DEBUG 2024-02-23 13:26:37,970: Starting new HTTP connection (1): localhost:39427 urllib3.connectionpool DEBUG 2024-02-23 13:26:37,997: http://localhost:39427 "GET /api/jobs/92ca5dfeb6970722 HTTP/1.1" 200 1245 urllib3.connectionpool DEBUG 2024-02-23 13:26:38,251: Starting new HTTP connection (1): localhost:39427 urllib3.connectionpool DEBUG 2024-02-23 13:26:38,282: http://localhost:39427 "GET /api/jobs/92ca5dfeb6970722 HTTP/1.1" 200 1245 urllib3.connectionpool DEBUG 2024-02-23 13:26:38,536: Starting new HTTP connection (1): localhost:39427 urllib3.connectionpool DEBUG 2024-02-23 13:26:38,575: http://localhost:39427 "GET /api/jobs/92ca5dfeb6970722 HTTP/1.1" 200 1245 urllib3.connectionpool DEBUG 2024-02-23 13:26:38,828: Starting new HTTP connection (1): localhost:39427 urllib3.connectionpool DEBUG 2024-02-23 13:26:38,858: http://localhost:39427 "GET /api/jobs/92ca5dfeb6970722 HTTP/1.1" 200 1245 urllib3.connectionpool DEBUG 2024-02-23 13:26:39,112: Starting new HTTP connection (1): localhost:39427 urllib3.connectionpool DEBUG 2024-02-23 13:26:39,141: http://localhost:39427 "GET /api/jobs/92ca5dfeb6970722 HTTP/1.1" 200 1245 urllib3.connectionpool DEBUG 2024-02-23 13:26:39,395: Starting new HTTP connection (1): localhost:39427 urllib3.connectionpool DEBUG 2024-02-23 13:26:39,423: http://localhost:39427 "GET /api/jobs/92ca5dfeb6970722 HTTP/1.1" 200 1245 urllib3.connectionpool DEBUG 2024-02-23 13:26:39,677: Starting new HTTP connection (1): localhost:39427 urllib3.connectionpool DEBUG 2024-02-23 13:26:39,714: http://localhost:39427 "GET /api/jobs/92ca5dfeb6970722 HTTP/1.1" 200 1245 urllib3.connectionpool DEBUG 2024-02-23 13:26:39,968: Starting new HTTP connection (1): localhost:39427 urllib3.connectionpool DEBUG 2024-02-23 13:26:40,000: http://localhost:39427 "GET /api/jobs/92ca5dfeb6970722 HTTP/1.1" 200 1245 urllib3.connectionpool DEBUG 2024-02-23 13:26:40,254: Starting new HTTP connection (1): localhost:39427 urllib3.connectionpool DEBUG 2024-02-23 13:26:40,280: http://localhost:39427 "GET /api/jobs/92ca5dfeb6970722 HTTP/1.1" 200 1245 urllib3.connectionpool DEBUG 2024-02-23 13:26:40,534: Starting new HTTP connection (1): localhost:39427 urllib3.connectionpool DEBUG 2024-02-23 13:26:40,561: http://localhost:39427 "GET /api/jobs/92ca5dfeb6970722 HTTP/1.1" 200 1245 urllib3.connectionpool DEBUG 2024-02-23 13:26:40,815: Starting new HTTP connection (1): localhost:39427 urllib3.connectionpool DEBUG 2024-02-23 13:26:40,842: http://localhost:39427 "GET /api/jobs/92ca5dfeb6970722 HTTP/1.1" 200 1245 urllib3.connectionpool DEBUG 2024-02-23 13:26:41,096: Starting new HTTP connection (1): localhost:39427 urllib3.connectionpool DEBUG 2024-02-23 13:26:41,124: http://localhost:39427 "GET /api/jobs/92ca5dfeb6970722 HTTP/1.1" 200 1245 urllib3.connectionpool DEBUG 2024-02-23 13:26:41,378: Starting new HTTP connection (1): localhost:39427 urllib3.connectionpool DEBUG 2024-02-23 13:26:41,405: http://localhost:39427 "GET /api/jobs/92ca5dfeb6970722 HTTP/1.1" 200 1245 urllib3.connectionpool DEBUG 2024-02-23 13:26:41,659: Starting new HTTP connection (1): localhost:39427 urllib3.connectionpool DEBUG 2024-02-23 13:26:41,700: http://localhost:39427 "GET /api/jobs/92ca5dfeb6970722 HTTP/1.1" 200 1245 urllib3.connectionpool DEBUG 2024-02-23 13:26:41,953: Starting new HTTP connection (1): localhost:39427 urllib3.connectionpool DEBUG 2024-02-23 13:26:41,987: http://localhost:39427 "GET /api/jobs/92ca5dfeb6970722 HTTP/1.1" 200 1245 urllib3.connectionpool DEBUG 2024-02-23 13:26:42,241: Starting new HTTP connection (1): localhost:39427 urllib3.connectionpool DEBUG 2024-02-23 13:26:42,275: http://localhost:39427 "GET /api/jobs/92ca5dfeb6970722 HTTP/1.1" 200 1245 urllib3.connectionpool DEBUG 2024-02-23 13:26:42,529: Starting new HTTP connection (1): localhost:39427 urllib3.connectionpool DEBUG 2024-02-23 13:26:42,563: http://localhost:39427 "GET /api/jobs/92ca5dfeb6970722 HTTP/1.1" 200 1245 urllib3.connectionpool DEBUG 2024-02-23 13:26:42,817: Starting new HTTP connection (1): localhost:39427 urllib3.connectionpool DEBUG 2024-02-23 13:26:42,848: http://localhost:39427 "GET /api/jobs/92ca5dfeb6970722 HTTP/1.1" 200 1245 urllib3.connectionpool DEBUG 2024-02-23 13:26:43,102: Starting new HTTP connection (1): localhost:39427 urllib3.connectionpool DEBUG 2024-02-23 13:26:43,131: http://localhost:39427 "GET /api/jobs/92ca5dfeb6970722 HTTP/1.1" 200 1245 urllib3.connectionpool DEBUG 2024-02-23 13:26:43,385: Starting new HTTP connection (1): localhost:39427 urllib3.connectionpool DEBUG 2024-02-23 13:26:43,415: http://localhost:39427 "GET /api/jobs/92ca5dfeb6970722 HTTP/1.1" 200 1245 urllib3.connectionpool DEBUG 2024-02-23 13:26:43,668: Starting new HTTP connection (1): localhost:39427 urllib3.connectionpool DEBUG 2024-02-23 13:26:43,717: http://localhost:39427 "GET /api/jobs/92ca5dfeb6970722 HTTP/1.1" 200 1245 urllib3.connectionpool DEBUG 2024-02-23 13:26:43,971: Starting new HTTP connection (1): localhost:39427 urllib3.connectionpool DEBUG 2024-02-23 13:26:44,003: http://localhost:39427 "GET /api/jobs/92ca5dfeb6970722 HTTP/1.1" 200 1245 urllib3.connectionpool DEBUG 2024-02-23 13:26:44,256: Starting new HTTP connection (1): localhost:39427 urllib3.connectionpool DEBUG 2024-02-23 13:26:44,282: http://localhost:39427 "GET /api/jobs/92ca5dfeb6970722 HTTP/1.1" 200 1245 urllib3.connectionpool DEBUG 2024-02-23 13:26:44,536: Starting new HTTP connection (1): localhost:39427 urllib3.connectionpool DEBUG 2024-02-23 13:26:44,564: http://localhost:39427 "GET /api/jobs/92ca5dfeb6970722 HTTP/1.1" 200 1245 urllib3.connectionpool DEBUG 2024-02-23 13:26:44,818: Starting new HTTP connection (1): localhost:39427 urllib3.connectionpool DEBUG 2024-02-23 13:26:44,868: http://localhost:39427 "GET /api/jobs/92ca5dfeb6970722 HTTP/1.1" 200 1245 urllib3.connectionpool DEBUG 2024-02-23 13:26:45,122: Starting new HTTP connection (1): localhost:39427 urllib3.connectionpool DEBUG 2024-02-23 13:26:45,157: http://localhost:39427 "GET /api/jobs/92ca5dfeb6970722 HTTP/1.1" 200 1245 urllib3.connectionpool DEBUG 2024-02-23 13:26:45,411: Starting new HTTP connection (1): localhost:39427 urllib3.connectionpool DEBUG 2024-02-23 13:26:45,442: http://localhost:39427 "GET /api/jobs/92ca5dfeb6970722 HTTP/1.1" 200 1245 urllib3.connectionpool DEBUG 2024-02-23 13:26:45,695: Starting new HTTP connection (1): localhost:39427 urllib3.connectionpool DEBUG 2024-02-23 13:26:45,723: http://localhost:39427 "GET /api/jobs/92ca5dfeb6970722 HTTP/1.1" 200 1245 urllib3.connectionpool DEBUG 2024-02-23 13:26:45,976: Starting new HTTP connection (1): localhost:39427 urllib3.connectionpool DEBUG 2024-02-23 13:26:46,007: http://localhost:39427 "GET /api/jobs/92ca5dfeb6970722 HTTP/1.1" 200 1245 urllib3.connectionpool DEBUG 2024-02-23 13:26:46,261: Starting new HTTP connection (1): localhost:39427 urllib3.connectionpool DEBUG 2024-02-23 13:26:46,292: http://localhost:39427 "GET /api/jobs/92ca5dfeb6970722 HTTP/1.1" 200 1245 urllib3.connectionpool DEBUG 2024-02-23 13:26:46,545: Starting new HTTP connection (1): localhost:39427 urllib3.connectionpool DEBUG 2024-02-23 13:26:46,576: http://localhost:39427 "GET /api/jobs/92ca5dfeb6970722 HTTP/1.1" 200 1245 urllib3.connectionpool DEBUG 2024-02-23 13:26:46,829: Starting new HTTP connection (1): localhost:39427 urllib3.connectionpool DEBUG 2024-02-23 13:26:46,861: http://localhost:39427 "GET /api/jobs/92ca5dfeb6970722 HTTP/1.1" 200 1245 urllib3.connectionpool DEBUG 2024-02-23 13:26:47,115: Starting new HTTP connection (1): localhost:39427 urllib3.connectionpool DEBUG 2024-02-23 13:26:47,144: http://localhost:39427 "GET /api/jobs/92ca5dfeb6970722 HTTP/1.1" 200 1245 urllib3.connectionpool DEBUG 2024-02-23 13:26:47,398: Starting new HTTP connection (1): localhost:39427 urllib3.connectionpool DEBUG 2024-02-23 13:26:47,434: http://localhost:39427 "GET /api/jobs/92ca5dfeb6970722 HTTP/1.1" 200 1245 urllib3.connectionpool DEBUG 2024-02-23 13:26:47,687: Starting new HTTP connection (1): localhost:39427 urllib3.connectionpool DEBUG 2024-02-23 13:26:47,717: http://localhost:39427 "GET /api/jobs/92ca5dfeb6970722 HTTP/1.1" 200 1245 urllib3.connectionpool DEBUG 2024-02-23 13:26:47,971: Starting new HTTP connection (1): localhost:39427 urllib3.connectionpool DEBUG 2024-02-23 13:26:48,005: http://localhost:39427 "GET /api/jobs/92ca5dfeb6970722 HTTP/1.1" 200 1245 urllib3.connectionpool DEBUG 2024-02-23 13:26:48,258: Starting new HTTP connection (1): localhost:39427 urllib3.connectionpool DEBUG 2024-02-23 13:26:48,290: http://localhost:39427 "GET /api/jobs/92ca5dfeb6970722 HTTP/1.1" 200 1245 urllib3.connectionpool DEBUG 2024-02-23 13:26:48,544: Starting new HTTP connection (1): localhost:39427 urllib3.connectionpool DEBUG 2024-02-23 13:26:48,575: http://localhost:39427 "GET /api/jobs/92ca5dfeb6970722 HTTP/1.1" 200 1245 urllib3.connectionpool DEBUG 2024-02-23 13:26:48,828: Starting new HTTP connection (1): localhost:39427 urllib3.connectionpool DEBUG 2024-02-23 13:26:48,864: http://localhost:39427 "GET /api/jobs/92ca5dfeb6970722 HTTP/1.1" 200 1245 urllib3.connectionpool DEBUG 2024-02-23 13:26:49,118: Starting new HTTP connection (1): localhost:39427 urllib3.connectionpool DEBUG 2024-02-23 13:26:49,157: http://localhost:39427 "GET /api/jobs/92ca5dfeb6970722 HTTP/1.1" 200 1245 urllib3.connectionpool DEBUG 2024-02-23 13:26:49,411: Starting new HTTP connection (1): localhost:39427 urllib3.connectionpool DEBUG 2024-02-23 13:26:49,446: http://localhost:39427 "GET /api/jobs/92ca5dfeb6970722 HTTP/1.1" 200 1235 urllib3.connectionpool DEBUG 2024-02-23 13:26:49,450: Starting new HTTP connection (1): localhost:39427 urllib3.connectionpool DEBUG 2024-02-23 13:26:49,484: http://localhost:39427 "GET /api/jobs/92ca5dfeb6970722?full=true HTTP/1.1" 200 24009 urllib3.connectionpool DEBUG 2024-02-23 13:26:49,488: Starting new HTTP connection (1): localhost:39427 urllib3.connectionpool DEBUG 2024-02-23 13:26:49,519: http://localhost:39427 "GET /api/jobs/92ca5dfeb6970722 HTTP/1.1" 200 1235 urllib3.connectionpool DEBUG 2024-02-23 13:26:49,522: Starting new HTTP connection (1): localhost:39427 urllib3.connectionpool DEBUG 2024-02-23 13:26:49,550: http://localhost:39427 "GET /api/histories/f7b3fc53f9a1cdab/contents/6dbfa938ce9b0666/display?raw=true HTTP/1.1" 200 747 urllib3.connectionpool DEBUG 2024-02-23 13:26:49,554: Starting new HTTP connection (1): localhost:39427 urllib3.connectionpool DEBUG 2024-02-23 13:26:49,579: http://localhost:39427 "GET /api/tools/ncbi_fcs_adaptor/test_data_download?filename=adaptor_report.tab&tool_version=0.5.0+galaxy0 HTTP/1.1" 200 None urllib3.connectionpool DEBUG 2024-02-23 13:26:49,583: Starting new HTTP connection (1): localhost:39427 urllib3.connectionpool DEBUG 2024-02-23 13:26:49,625: http://localhost:39427 "GET /api/histories/f7b3fc53f9a1cdab/contents/6dbfa938ce9b0666 HTTP/1.1" 200 2910 urllib3.connectionpool DEBUG 2024-02-23 13:26:49,629: Starting new HTTP connection (1): localhost:39427 urllib3.connectionpool DEBUG 2024-02-23 13:26:49,658: http://localhost:39427 "GET /api/histories/f7b3fc53f9a1cdab/contents/6dbfa938ce9b0666/provenance HTTP/1.1" 200 None urllib3.connectionpool DEBUG 2024-02-23 13:26:49,662: Starting new HTTP connection (1): localhost:39427 urllib3.connectionpool DEBUG 2024-02-23 13:26:49,688: http://localhost:39427 "GET /api/jobs/92ca5dfeb6970722/outputs HTTP/1.1" 200 295 urllib3.connectionpool DEBUG 2024-02-23 13:26:49,691: Starting new HTTP connection (1): localhost:39427 urllib3.connectionpool DEBUG 2024-02-23 13:26:49,722: http://localhost:39427 "GET /api/jobs/92ca5dfeb6970722 HTTP/1.1" 200 1235 urllib3.connectionpool DEBUG 2024-02-23 13:26:49,726: Starting new HTTP connection (1): localhost:39427 urllib3.connectionpool DEBUG 2024-02-23 13:26:49,750: http://localhost:39427 "GET /api/histories/f7b3fc53f9a1cdab/contents/61b7cfd431b1c4f8/display?raw=true HTTP/1.1" 200 516117 urllib3.connectionpool DEBUG 2024-02-23 13:26:49,761: Starting new HTTP connection (1): localhost:39427 urllib3.connectionpool DEBUG 2024-02-23 13:26:49,782: http://localhost:39427 "GET /api/tools/ncbi_fcs_adaptor/test_data_download?filename=clean_fasta.fa.gz&tool_version=0.5.0+galaxy0 HTTP/1.1" 200 None urllib3.connectionpool DEBUG 2024-02-23 13:26:49,808: Starting new HTTP connection (1): localhost:39427 urllib3.connectionpool DEBUG 2024-02-23 13:26:49,865: http://localhost:39427 "GET /api/histories/f7b3fc53f9a1cdab/contents/61b7cfd431b1c4f8 HTTP/1.1" 200 2257 urllib3.connectionpool DEBUG 2024-02-23 13:26:49,868: Starting new HTTP connection (1): localhost:39427 urllib3.connectionpool DEBUG 2024-02-23 13:26:49,905: http://localhost:39427 "GET /api/histories/f7b3fc53f9a1cdab/contents/61b7cfd431b1c4f8/provenance HTTP/1.1" 200 None urllib3.connectionpool DEBUG 2024-02-23 13:26:49,909: Starting new HTTP connection (1): localhost:39427 urllib3.connectionpool DEBUG 2024-02-23 13:26:49,938: http://localhost:39427 "GET /api/jobs/92ca5dfeb6970722/outputs HTTP/1.1" 200 295 urllib3.connectionpool DEBUG 2024-02-23 13:26:49,942: Starting new HTTP connection (1): localhost:39427 urllib3.connectionpool DEBUG 2024-02-23 13:26:49,972: http://localhost:39427 "GET /api/jobs/92ca5dfeb6970722 HTTP/1.1" 200 1235 urllib3.connectionpool DEBUG 2024-02-23 13:26:49,976: Starting new HTTP connection (1): localhost:39427 galaxy.jobs.runners.util.process_groups DEBUG 2024-02-23 13:26:49,072 [pN:main.1,p:76310,tN:LocalRunner.work_thread-3] check_pg(): No process found in process group 77003 galaxy.jobs.runners.local DEBUG 2024-02-23 13:26:49,073 [pN:main.1,p:76310,tN:LocalRunner.work_thread-3] execution finished: /tmp/tmpu7x63f_i/job_working_directory/000/4/galaxy_4.sh galaxy.jobs DEBUG 2024-02-23 13:26:49,095 [pN:main.1,p:76310,tN:LocalRunner.work_thread-3] finish(): Moved /tmp/tmpu7x63f_i/job_working_directory/000/4/outputs/dataset_5bd87a72-fbff-4e4a-a27a-aa9a07b645ae.dat to /tmp/tmpu7x63f_i/files/5/b/d/dataset_5bd87a72-fbff-4e4a-a27a-aa9a07b645ae.dat galaxy.jobs DEBUG 2024-02-23 13:26:49,096 [pN:main.1,p:76310,tN:LocalRunner.work_thread-3] finish(): Moved /tmp/tmpu7x63f_i/job_working_directory/000/4/outputs/dataset_2556b660-7d40-4c96-ae9b-4e54b5c33132.dat to /tmp/tmpu7x63f_i/files/2/5/5/dataset_2556b660-7d40-4c96-ae9b-4e54b5c33132.dat galaxy.jobs DEBUG 2024-02-23 13:26:49,096 [pN:main.1,p:76310,tN:LocalRunner.work_thread-3] finish(): Moved /tmp/tmpu7x63f_i/job_working_directory/000/4/outputs/dataset_8294ec1f-feb6-4427-822b-0d653c89d82d.dat to /tmp/tmpu7x63f_i/files/8/2/9/dataset_8294ec1f-feb6-4427-822b-0d653c89d82d.dat galaxy.jobs DEBUG 2024-02-23 13:26:49,096 [pN:main.1,p:76310,tN:LocalRunner.work_thread-3] finish(): Moved /tmp/tmpu7x63f_i/job_working_directory/000/4/outputs/dataset_664ec871-210e-4cf1-867e-c67d8419c064.dat to /tmp/tmpu7x63f_i/files/6/6/4/dataset_664ec871-210e-4cf1-867e-c67d8419c064.dat galaxy.model.metadata DEBUG 2024-02-23 13:26:49,104 [pN:main.1,p:76310,tN:LocalRunner.work_thread-3] loading metadata from file for: HistoryDatasetAssociation 5 galaxy.model.metadata DEBUG 2024-02-23 13:26:49,108 [pN:main.1,p:76310,tN:LocalRunner.work_thread-3] loading metadata from file for: HistoryDatasetAssociation 6 galaxy.model.metadata DEBUG 2024-02-23 13:26:49,111 [pN:main.1,p:76310,tN:LocalRunner.work_thread-3] loading metadata from file for: HistoryDatasetAssociation 7 galaxy.model.metadata DEBUG 2024-02-23 13:26:49,136 [pN:main.1,p:76310,tN:LocalRunner.work_thread-3] loading metadata from file for: HistoryDatasetAssociation 8 galaxy.jobs DEBUG 2024-02-23 13:26:49,199 [pN:main.1,p:76310,tN:LocalRunner.work_thread-3] job_wrapper.finish for job 4 executed (108.579 ms) urllib3.connectionpool DEBUG 2024-02-23 13:26:50,004: http://localhost:39427 "GET /api/histories/f7b3fc53f9a1cdab/contents/61e4ab4928f54139/display?raw=true HTTP/1.1" 200 15017 urllib3.connectionpool DEBUG 2024-02-23 13:26:50,010: Starting new HTTP connection (1): localhost:39427 urllib3.connectionpool DEBUG 2024-02-23 13:26:50,048: http://localhost:39427 "GET /api/histories/f7b3fc53f9a1cdab/contents/61e4ab4928f54139/provenance HTTP/1.1" 200 None urllib3.connectionpool DEBUG 2024-02-23 13:26:50,055: Starting new HTTP connection (1): localhost:39427 urllib3.connectionpool DEBUG 2024-02-23 13:26:50,085: http://localhost:39427 "GET /api/jobs/92ca5dfeb6970722/outputs HTTP/1.1" 200 295 urllib3.connectionpool DEBUG 2024-02-23 13:26:50,089: Starting new HTTP connection (1): localhost:39427 urllib3.connectionpool DEBUG 2024-02-23 13:26:50,118: http://localhost:39427 "GET /api/jobs/92ca5dfeb6970722 HTTP/1.1" 200 1235 urllib3.connectionpool DEBUG 2024-02-23 13:26:50,122: Starting new HTTP connection (1): localhost:39427 urllib3.connectionpool DEBUG 2024-02-23 13:26:50,147: http://localhost:39427 "GET /api/histories/f7b3fc53f9a1cdab/contents/b449eaa0511fdf9e/display?raw=true HTTP/1.1" 200 0 urllib3.connectionpool DEBUG 2024-02-23 13:26:50,150: Starting new HTTP connection (1): localhost:39427 urllib3.connectionpool DEBUG 2024-02-23 13:26:50,178: http://localhost:39427 "GET /api/histories/f7b3fc53f9a1cdab/contents/b449eaa0511fdf9e/provenance HTTP/1.1" 200 None urllib3.connectionpool DEBUG 2024-02-23 13:26:50,182: Starting new HTTP connection (1): localhost:39427 urllib3.connectionpool DEBUG 2024-02-23 13:26:50,210: http://localhost:39427 "GET /api/jobs/92ca5dfeb6970722/outputs HTTP/1.1" 200 295 urllib3.connectionpool DEBUG 2024-02-23 13:26:50,214: Starting new HTTP connection (1): localhost:39427 urllib3.connectionpool DEBUG 2024-02-23 13:26:50,259: http://localhost:39427 "DELETE /api/histories/f7b3fc53f9a1cdab HTTP/1.1" 200 1099 Galaxy Log: galaxy.jobs DEBUG 2024-02-23 12:54:49,300 [pN:main,p:69576,tN:MainThread] Loading job configuration from /scratch/rico/galaxytools/tools/ncbi_fcs_adaptor/planemo_job_conf.xml galaxy.jobs DEBUG 2024-02-23 12:54:49,301 [pN:main,p:69576,tN:MainThread] Read job configuration from file: /scratch/rico/galaxytools/tools/ncbi_fcs_adaptor/planemo_job_conf.xml galaxy.web_stack.handlers INFO 2024-02-23 12:54:49,310 [pN:main,p:69576,tN:MainThread] JobConfiguration: No job handler assignment method is set, defaulting to 'HANDLER_ASSIGNMENT_METHODS.DB_SKIP_LOCKED', set the `assign_with` attribute on <handlers> to override the default galaxy.jobs INFO 2024-02-23 12:54:49,311 [pN:main,p:69576,tN:MainThread] Job handler assignment methods set to: db-skip-locked galaxy.web_stack.handlers DEBUG 2024-02-23 12:54:49,311 [pN:main,p:69576,tN:MainThread] default set to child with id or tag 'docker_local' galaxy.jobs DEBUG 2024-02-23 12:54:49,311 [pN:main,p:69576,tN:MainThread] Done loading job configuration galaxy.security.vault WARNING 2024-02-23 12:54:49,489 [pN:main,p:69576,tN:MainThread] No vault configured. We recommend defining the vault_config_file setting in galaxy.yml galaxy.datatypes.registry DEBUG 2024-02-23 12:54:49,532 [pN:main,p:69576,tN:MainThread] Loading datatypes from /scratch/rico/galaxy/lib/galaxy/config/sample/datatypes_conf.xml.sample galaxy.datatypes.registry DEBUG 2024-02-23 12:54:49,532 [pN:main,p:69576,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension source.h. galaxy.datatypes.registry DEBUG 2024-02-23 12:54:49,533 [pN:main,p:69576,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension source.c. galaxy.datatypes.registry DEBUG 2024-02-23 12:54:49,533 [pN:main,p:69576,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension source.cpp. galaxy.datatypes.registry DEBUG 2024-02-23 12:54:49,533 [pN:main,p:69576,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension source.py. galaxy.datatypes.registry DEBUG 2024-02-23 12:54:49,533 [pN:main,p:69576,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension source.go. galaxy.datatypes.registry DEBUG 2024-02-23 12:54:49,533 [pN:main,p:69576,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension source.rs. galaxy.datatypes.registry DEBUG 2024-02-23 12:54:49,533 [pN:main,p:69576,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension source.cs. galaxy.datatypes.registry DEBUG 2024-02-23 12:54:49,533 [pN:main,p:69576,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:Binary from the datatype registry for extension hep.root. galaxy.datatypes.registry DEBUG 2024-02-23 12:54:49,534 [pN:main,p:69576,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:JP2 from the datatype registry for extension jp2. galaxy.datatypes.registry DEBUG 2024-02-23 12:54:49,534 [pN:main,p:69576,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:Ab1 from the datatype registry for extension ab1. galaxy.datatypes.registry DEBUG 2024-02-23 12:54:49,534 [pN:main,p:69576,tN:MainThread] Retrieved datatype module galaxy.datatypes.assembly:Amos from the datatype registry for extension afg. galaxy.datatypes.registry DEBUG 2024-02-23 12:54:49,535 [pN:main,p:69576,tN:MainThread] Retrieved datatype module galaxy.datatypes.goldenpath:GoldenPath from the datatype registry for extension agp. galaxy.datatypes.registry DEBUG 2024-02-23 12:54:49,536 [pN:main,p:69576,tN:MainThread] Retrieved datatype module galaxy.datatypes.anvio:AnvioComposite from the datatype registry for extension anvio_cog_profile. galaxy.datatypes.registry DEBUG 2024-02-23 12:54:49,536 [pN:main,p:69576,tN:MainThread] Retrieved datatype module galaxy.datatypes.anvio:AnvioComposite from the datatype registry for extension anvio_composite. galaxy.datatypes.registry DEBUG 2024-02-23 12:54:49,536 [pN:main,p:69576,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:Data from the datatype registry for extension anvio_classifier. galaxy.datatypes.registry DEBUG 2024-02-23 12:54:49,536 [pN:main,p:69576,tN:MainThread] Retrieved datatype module galaxy.datatypes.anvio:AnvioContigsDB from the datatype registry for extension anvio_contigs_db. galaxy.datatypes.registry DEBUG 2024-02-23 12:54:49,536 [pN:main,p:69576,tN:MainThread] Retrieved datatype module galaxy.datatypes.anvio:AnvioDB from the datatype registry for extension anvio_db. galaxy.datatypes.registry DEBUG 2024-02-23 12:54:49,536 [pN:main,p:69576,tN:MainThread] Retrieved datatype module galaxy.datatypes.anvio:AnvioGenomesDB from the datatype registry for extension anvio_genomes_db. galaxy.datatypes.registry DEBUG 2024-02-23 12:54:49,537 [pN:main,p:69576,tN:MainThread] Retrieved datatype module galaxy.datatypes.anvio:AnvioPanDB from the datatype registry for extension anvio_pan_db. galaxy.datatypes.registry DEBUG 2024-02-23 12:54:49,537 [pN:main,p:69576,tN:MainThread] Retrieved datatype module galaxy.datatypes.anvio:AnvioComposite from the datatype registry for extension anvio_pfam_profile. galaxy.datatypes.registry DEBUG 2024-02-23 12:54:49,537 [pN:main,p:69576,tN:MainThread] Retrieved datatype module galaxy.datatypes.anvio:AnvioProfileDB from the datatype registry for extension anvio_profile_db. galaxy.datatypes.registry DEBUG 2024-02-23 12:54:49,537 [pN:main,p:69576,tN:MainThread] Retrieved datatype module galaxy.datatypes.anvio:AnvioSamplesDB from the datatype registry for extension anvio_samples_db. galaxy.datatypes.registry DEBUG 2024-02-23 12:54:49,537 [pN:main,p:69576,tN:MainThread] Retrieved datatype module galaxy.datatypes.text:Json from the datatype registry for extension anvio_state. galaxy.datatypes.registry DEBUG 2024-02-23 12:54:49,537 [pN:main,p:69576,tN:MainThread] Retrieved datatype module galaxy.datatypes.anvio:AnvioStructureDB from the datatype registry for extension anvio_structure_db. galaxy.datatypes.registry DEBUG 2024-02-23 12:54:49,537 [pN:main,p:69576,tN:MainThread] Retrieved datatype module galaxy.datatypes.tabular:TSV from the datatype registry for extension anvio_variability. galaxy.datatypes.registry DEBUG 2024-02-23 12:54:49,537 [pN:main,p:69576,tN:MainThread] Retrieved datatype module galaxy.datatypes.text:Arff from the datatype registry for extension arff. galaxy.datatypes.registry DEBUG 2024-02-23 12:54:49,537 [pN:main,p:69576,tN:MainThread] Retrieved datatype module galaxy.datatypes.text:Paf from the datatype registry for extension paf. galaxy.datatypes.registry DEBUG 2024-02-23 12:54:49,538 [pN:main,p:69576,tN:MainThread] Retrieved datatype module galaxy.datatypes.text:Gfa1 from the datatype registry for extension gfa1. galaxy.datatypes.registry DEBUG 2024-02-23 12:54:49,538 [pN:main,p:69576,tN:MainThread] Retrieved datatype module galaxy.datatypes.text:Gfa2 from the datatype registry for extension gfa2. galaxy.datatypes.registry DEBUG 2024-02-23 12:54:49,538 [pN:main,p:69576,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:GenericAsn1 from the datatype registry for extension asn1. galaxy.datatypes.registry DEBUG 2024-02-23 12:54:49,538 [pN:main,p:69576,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:GenericAsn1Binary from the datatype registry for extension asn1-binary. galaxy.datatypes.registry DEBUG 2024-02-23 12:54:49,538 [pN:main,p:69576,tN:MainThread] Retrieved datatype module galaxy.datatypes.sequence:Axt from the datatype registry for extension axt. galaxy.datatypes.registry DEBUG 2024-02-23 12:54:49,538 [pN:main,p:69576,tN:MainThread] Retrieved datatype module galaxy.datatypes.tabular:FeatureLocationIndex from the datatype registry for extension fli. galaxy.datatypes.registry DEBUG 2024-02-23 12:54:49,538 [pN:main,p:69576,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:Bam from the datatype registry for extension bam. galaxy.datatypes.registry DEBUG 2024-02-23 12:54:49,538 [pN:main,p:69576,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:Binary from the datatype registry for extension bai. galaxy.datatypes.registry DEBUG 2024-02-23 12:54:49,539 [pN:main,p:69576,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:BamInputSorted from the datatype registry for extension qname_input_sorted.bam. galaxy.datatypes.registry DEBUG 2024-02-23 12:54:49,539 [pN:main,p:69576,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:BamQuerynameSorted from the datatype registry for extension qname_sorted.bam. galaxy.datatypes.registry DEBUG 2024-02-23 12:54:49,539 [pN:main,p:69576,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:BamNative from the datatype registry for extension unsorted.bam. galaxy.datatypes.registry DEBUG 2024-02-23 12:54:49,539 [pN:main,p:69576,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:ProBam from the datatype registry for extension probam. galaxy.datatypes.registry DEBUG 2024-02-23 12:54:49,539 [pN:main,p:69576,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:CRAM from the datatype registry for extension cram. galaxy.datatypes.registry DEBUG 2024-02-23 12:54:49,539 [pN:main,p:69576,tN:MainThread] Retrieved datatype module galaxy.datatypes.interval:Bed from the datatype registry for extension bed. galaxy.datatypes.registry DEBUG 2024-02-23 12:54:49,539 [pN:main,p:69576,tN:MainThread] Retrieved datatype module galaxy.datatypes.interval:BedGraph from the datatype registry for extension bedgraph. galaxy.datatypes.registry DEBUG 2024-02-23 12:54:49,539 [pN:main,p:69576,tN:MainThread] Retrieved datatype module galaxy.datatypes.interval:BedStrict from the datatype registry for extension bedstrict. galaxy.datatypes.registry DEBUG 2024-02-23 12:54:49,539 [pN:main,p:69576,tN:MainThread] Retrieved datatype module galaxy.datatypes.interval:Bed6 from the datatype registry for extension bed6. galaxy.datatypes.registry DEBUG 2024-02-23 12:54:49,539 [pN:main,p:69576,tN:MainThread] Retrieved datatype module galaxy.datatypes.interval:Bed12 from the datatype registry for extension bed12. galaxy.datatypes.registry DEBUG 2024-02-23 12:54:49,540 [pN:main,p:69576,tN:MainThread] Retrieved datatype module galaxy.datatypes.interval:ProBed from the datatype registry for extension probed. galaxy.datatypes.registry DEBUG 2024-02-23 12:54:49,540 [pN:main,p:69576,tN:MainThread] Retrieved datatype module galaxy.datatypes.chrominfo:ChromInfo from the datatype registry for extension len. galaxy.datatypes.registry DEBUG 2024-02-23 12:54:49,540 [pN:main,p:69576,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:DAA from the datatype registry for extension daa. galaxy.datatypes.registry DEBUG 2024-02-23 12:54:49,540 [pN:main,p:69576,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:RMA6 from the datatype registry for extension rma6. galaxy.datatypes.registry DEBUG 2024-02-23 12:54:49,540 [pN:main,p:69576,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:DMND from the datatype registry for extension dmnd. galaxy.datatypes.registry DEBUG 2024-02-23 12:54:49,541 [pN:main,p:69576,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:Parquet from the datatype registry for extension parquet. galaxy.datatypes.registry DEBUG 2024-02-23 12:54:49,541 [pN:main,p:69576,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:Idat from the datatype registry for extension idat. galaxy.datatypes.registry DEBUG 2024-02-23 12:54:49,541 [pN:main,p:69576,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:BigBed from the datatype registry for extension bigbed. galaxy.datatypes.registry DEBUG 2024-02-23 12:54:49,541 [pN:main,p:69576,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:BigWig from the datatype registry for extension bigwig. galaxy.datatypes.registry DEBUG 2024-02-23 12:54:49,541 [pN:main,p:69576,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:Binary from the datatype registry for extension cxb. galaxy.datatypes.registry DEBUG 2024-02-23 12:54:49,541 [pN:main,p:69576,tN:MainThread] Retrieved datatype module galaxy.datatypes.interval:ChromatinInteractions from the datatype registry for extension chrint. galaxy.datatypes.registry DEBUG 2024-02-23 12:54:49,541 [pN:main,p:69576,tN:MainThread] Retrieved datatype module galaxy.datatypes.tabular:CSV from the datatype registry for extension csv. galaxy.datatypes.registry DEBUG 2024-02-23 12:54:49,541 [pN:main,p:69576,tN:MainThread] Retrieved datatype module galaxy.datatypes.tabular:TSV from the datatype registry for extension tsv. galaxy.datatypes.registry DEBUG 2024-02-23 12:54:49,541 [pN:main,p:69576,tN:MainThread] Retrieved datatype module galaxy.datatypes.tabular:TSV from the datatype registry for extension intermine_tabular. galaxy.datatypes.registry DEBUG 2024-02-23 12:54:49,542 [pN:main,p:69576,tN:MainThread] Retrieved datatype module galaxy.datatypes.interval:CustomTrack from the datatype registry for extension customtrack. galaxy.datatypes.registry DEBUG 2024-02-23 12:54:49,542 [pN:main,p:69576,tN:MainThread] Retrieved datatype module galaxy.datatypes.ngsindex:BowtieColorIndex from the datatype registry for extension bowtie_color_index. galaxy.datatypes.registry DEBUG 2024-02-23 12:54:49,542 [pN:main,p:69576,tN:MainThread] Retrieved datatype module galaxy.datatypes.ngsindex:BowtieBaseIndex from the datatype registry for extension bowtie_base_index. galaxy.datatypes.registry DEBUG 2024-02-23 12:54:49,542 [pN:main,p:69576,tN:MainThread] Retrieved datatype module galaxy.datatypes.sequence:csFasta from the datatype registry for extension csfasta. galaxy.datatypes.registry DEBUG 2024-02-23 12:54:49,542 [pN:main,p:69576,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:Data from the datatype registry for extension data. galaxy.datatypes.registry DEBUG 2024-02-23 12:54:49,542 [pN:main,p:69576,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:Binary from the datatype registry for extension gz. galaxy.datatypes.registry DEBUG 2024-02-23 12:54:49,543 [pN:main,p:69576,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:Binary from the datatype registry for extension binary. galaxy.datatypes.registry DEBUG 2024-02-23 12:54:49,543 [pN:main,p:69576,tN:MainThread] Retrieved datatype module galaxy.datatypes.text:Json from the datatype registry for extension d3_hierarchy. galaxy.datatypes.registry DEBUG 2024-02-23 12:54:49,543 [pN:main,p:69576,tN:MainThread] Retrieved datatype module galaxy.datatypes.text:ImgtJson from the datatype registry for extension imgt.json. galaxy.datatypes.registry DEBUG 2024-02-23 12:54:49,543 [pN:main,p:69576,tN:MainThread] Retrieved datatype module galaxy.datatypes.text:GeoJson from the datatype registry for extension geojson. galaxy.datatypes.registry DEBUG 2024-02-23 12:54:49,543 [pN:main,p:69576,tN:MainThread] Retrieved datatype module galaxy.datatypes.text:Json from the datatype registry for extension data_manager_json. galaxy.datatypes.registry DEBUG 2024-02-23 12:54:49,543 [pN:main,p:69576,tN:MainThread] Retrieved datatype module galaxy.datatypes.sequence:DotBracket from the datatype registry for extension dbn. galaxy.datatypes.registry DEBUG 2024-02-23 12:54:49,543 [pN:main,p:69576,tN:MainThread] Retrieved datatype module galaxy.datatypes.tabular:Tabular from the datatype registry for extension fai. galaxy.datatypes.registry DEBUG 2024-02-23 12:54:49,543 [pN:main,p:69576,tN:MainThread] Retrieved datatype module galaxy.datatypes.sequence:Fasta from the datatype registry for extension fasta. galaxy.datatypes.registry DEBUG 2024-02-23 12:54:49,544 [pN:main,p:69576,tN:MainThread] Retrieved datatype module galaxy.datatypes.sequence:Fastg from the datatype registry for extension fastg. galaxy.datatypes.registry DEBUG 2024-02-23 12:54:49,544 [pN:main,p:69576,tN:MainThread] Retrieved datatype module galaxy.datatypes.sequence:Fastq from the datatype registry for extension fastq. galaxy.datatypes.registry DEBUG 2024-02-23 12:54:49,544 [pN:main,p:69576,tN:MainThread] Retrieved datatype module galaxy.datatypes.sequence:FastqSanger from the datatype registry for extension fastqsanger. galaxy.datatypes.registry DEBUG 2024-02-23 12:54:49,544 [pN:main,p:69576,tN:MainThread] Retrieved datatype module galaxy.datatypes.sequence:FastqSolexa from the datatype registry for extension fastqsolexa. galaxy.datatypes.registry DEBUG 2024-02-23 12:54:49,544 [pN:main,p:69576,tN:MainThread] Retrieved datatype module galaxy.datatypes.sequence:FastqCSSanger from the datatype registry for extension fastqcssanger. galaxy.datatypes.registry DEBUG 2024-02-23 12:54:49,545 [pN:main,p:69576,tN:MainThread] Retrieved datatype module galaxy.datatypes.sequence:FastqIllumina from the datatype registry for extension fastqillumina. galaxy.datatypes.registry DEBUG 2024-02-23 12:54:49,545 [pN:main,p:69576,tN:MainThread] Retrieved datatype module galaxy.datatypes.sequence:SequenceSplitLocations from the datatype registry for extension fqtoc. galaxy.datatypes.registry DEBUG 2024-02-23 12:54:49,545 [pN:main,p:69576,tN:MainThread] Retrieved datatype module galaxy.datatypes.tabular:Eland from the datatype registry for extension eland. galaxy.datatypes.registry DEBUG 2024-02-23 12:54:49,545 [pN:main,p:69576,tN:MainThread] Retrieved datatype module galaxy.datatypes.tabular:ElandMulti from the datatype registry for extension elandmulti. galaxy.datatypes.registry DEBUG 2024-02-23 12:54:49,545 [pN:main,p:69576,tN:MainThread] Retrieved datatype module galaxy.datatypes.tracks:GeneTrack from the datatype registry for extension genetrack. galaxy.datatypes.registry DEBUG 2024-02-23 12:54:49,545 [pN:main,p:69576,tN:MainThread] Retrieved datatype module galaxy.datatypes.interval:Gff from the datatype registry for extension gff. galaxy.datatypes.registry DEBUG 2024-02-23 12:54:49,545 [pN:main,p:69576,tN:MainThread] Retrieved datatype module galaxy.datatypes.interval:Gff3 from the datatype registry for extension gff3. galaxy.datatypes.registry DEBUG 2024-02-23 12:54:49,546 [pN:main,p:69576,tN:MainThread] Retrieved datatype module galaxy.datatypes.images:Gif from the datatype registry for extension gif. galaxy.datatypes.registry DEBUG 2024-02-23 12:54:49,546 [pN:main,p:69576,tN:MainThread] Retrieved datatype module galaxy.datatypes.images:Gmaj from the datatype registry for extension gmaj.zip. galaxy.datatypes.registry DEBUG 2024-02-23 12:54:49,546 [pN:main,p:69576,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension graph_dot. galaxy.datatypes.registry DEBUG 2024-02-23 12:54:49,546 [pN:main,p:69576,tN:MainThread] Retrieved datatype module galaxy.datatypes.interval:Gtf from the datatype registry for extension gtf. galaxy.datatypes.registry DEBUG 2024-02-23 12:54:49,546 [pN:main,p:69576,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:Binary from the datatype registry for extension toolshed.gz. galaxy.datatypes.registry DEBUG 2024-02-23 12:54:49,546 [pN:main,p:69576,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:Binary from the datatype registry for extension hdf4. galaxy.datatypes.registry DEBUG 2024-02-23 12:54:49,547 [pN:main,p:69576,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:H5 from the datatype registry for extension h5. galaxy.datatypes.registry DEBUG 2024-02-23 12:54:49,547 [pN:main,p:69576,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:H5 from the datatype registry for extension scool. galaxy.datatypes.registry DEBUG 2024-02-23 12:54:49,547 [pN:main,p:69576,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:Grib from the datatype registry for extension grib. galaxy.datatypes.registry DEBUG 2024-02-23 12:54:49,547 [pN:main,p:69576,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:Loom from the datatype registry for extension loom. galaxy.datatypes.registry DEBUG 2024-02-23 12:54:49,547 [pN:main,p:69576,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:Anndata from the datatype registry for extension h5ad. galaxy.datatypes.registry DEBUG 2024-02-23 12:54:49,547 [pN:main,p:69576,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:Visium from the datatype registry for extension visium.tar.gz. galaxy.datatypes.registry DEBUG 2024-02-23 12:54:49,547 [pN:main,p:69576,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:H5 from the datatype registry for extension mz5. galaxy.datatypes.registry DEBUG 2024-02-23 12:54:49,547 [pN:main,p:69576,tN:MainThread] Retrieved datatype module galaxy.datatypes.text:Json from the datatype registry for extension hyphy_results.json. galaxy.datatypes.registry DEBUG 2024-02-23 12:54:49,547 [pN:main,p:69576,tN:MainThread] Retrieved datatype module galaxy.datatypes.text:Json from the datatype registry for extension hivtrace. galaxy.datatypes.registry DEBUG 2024-02-23 12:54:49,547 [pN:main,p:69576,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:Cool from the datatype registry for extension cool. galaxy.datatypes.registry DEBUG 2024-02-23 12:54:49,548 [pN:main,p:69576,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:MCool from the datatype registry for extension mcool. galaxy.datatypes.registry DEBUG 2024-02-23 12:54:49,548 [pN:main,p:69576,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:H5MLM from the datatype registry for extension h5mlm. galaxy.datatypes.registry DEBUG 2024-02-23 12:54:49,548 [pN:main,p:69576,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:LudwigModel from the datatype registry for extension ludwig_model. galaxy.datatypes.registry DEBUG 2024-02-23 12:54:49,548 [pN:main,p:69576,tN:MainThread] Retrieved datatype module galaxy.datatypes.text:Html from the datatype registry for extension html. galaxy.datatypes.registry DEBUG 2024-02-23 12:54:49,548 [pN:main,p:69576,tN:MainThread] Retrieved datatype module galaxy.datatypes.text:Html from the datatype registry for extension ludwig_report.html. galaxy.datatypes.registry DEBUG 2024-02-23 12:54:49,548 [pN:main,p:69576,tN:MainThread] Retrieved datatype module galaxy.datatypes.interval:Interval from the datatype registry for extension interval. galaxy.datatypes.registry DEBUG 2024-02-23 12:54:49,548 [pN:main,p:69576,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:Binary from the datatype registry for extension jellyfish. galaxy.datatypes.registry DEBUG 2024-02-23 12:54:49,548 [pN:main,p:69576,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:Binary from the datatype registry for extension ktab. galaxy.datatypes.registry DEBUG 2024-02-23 12:54:49,548 [pN:main,p:69576,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:Binary from the datatype registry for extension hist. galaxy.datatypes.registry DEBUG 2024-02-23 12:54:49,549 [pN:main,p:69576,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:Binary from the datatype registry for extension prof. galaxy.datatypes.registry DEBUG 2024-02-23 12:54:49,630 [pN:main,p:69576,tN:MainThread] Retrieved datatype module galaxy.datatypes.isa:IsaTab from the datatype registry for extension isa-tab. galaxy.datatypes.registry DEBUG 2024-02-23 12:54:49,630 [pN:main,p:69576,tN:MainThread] Retrieved datatype module galaxy.datatypes.isa:IsaJson from the datatype registry for extension isa-json. galaxy.datatypes.registry DEBUG 2024-02-23 12:54:49,630 [pN:main,p:69576,tN:MainThread] Retrieved datatype module galaxy.datatypes.tabular:Tabular from the datatype registry for extension picard_interval_list. galaxy.datatypes.registry DEBUG 2024-02-23 12:54:49,631 [pN:main,p:69576,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension gatk_interval. galaxy.datatypes.registry DEBUG 2024-02-23 12:54:49,631 [pN:main,p:69576,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension gatk_report. galaxy.datatypes.registry DEBUG 2024-02-23 12:54:49,631 [pN:main,p:69576,tN:MainThread] Retrieved datatype module galaxy.datatypes.tabular:Tabular from the datatype registry for extension gatk_dbsnp. galaxy.datatypes.registry DEBUG 2024-02-23 12:54:49,631 [pN:main,p:69576,tN:MainThread] Retrieved datatype module galaxy.datatypes.tabular:Tabular from the datatype registry for extension gatk_tranche. galaxy.datatypes.registry DEBUG 2024-02-23 12:54:49,631 [pN:main,p:69576,tN:MainThread] Retrieved datatype module galaxy.datatypes.tabular:Tabular from the datatype registry for extension gatk_recal. galaxy.datatypes.registry DEBUG 2024-02-23 12:54:49,631 [pN:main,p:69576,tN:MainThread] Retrieved datatype module galaxy.datatypes.tabular:Tabular from the datatype registry for extension cnn. galaxy.datatypes.registry DEBUG 2024-02-23 12:54:49,631 [pN:main,p:69576,tN:MainThread] Retrieved datatype module galaxy.datatypes.tabular:Tabular from the datatype registry for extension cns. galaxy.datatypes.registry DEBUG 2024-02-23 12:54:49,632 [pN:main,p:69576,tN:MainThread] Retrieved datatype module galaxy.datatypes.tabular:Tabular from the datatype registry for extension cnr. galaxy.datatypes.registry DEBUG 2024-02-23 12:54:49,632 [pN:main,p:69576,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension hhr. galaxy.datatypes.registry DEBUG 2024-02-23 12:54:49,632 [pN:main,p:69576,tN:MainThread] Retrieved datatype module galaxy.datatypes.images:Jpg from the datatype registry for extension jpg. galaxy.datatypes.registry DEBUG 2024-02-23 12:54:49,632 [pN:main,p:69576,tN:MainThread] Retrieved datatype module galaxy.datatypes.images:Tiff from the datatype registry for extension tiff. galaxy.datatypes.registry DEBUG 2024-02-23 12:54:49,632 [pN:main,p:69576,tN:MainThread] Retrieved datatype module galaxy.datatypes.images:Tiff from the datatype registry for extension tf2. galaxy.datatypes.registry DEBUG 2024-02-23 12:54:49,632 [pN:main,p:69576,tN:MainThread] Retrieved datatype module galaxy.datatypes.images:Tiff from the datatype registry for extension tf8. galaxy.datatypes.registry DEBUG 2024-02-23 12:54:49,632 [pN:main,p:69576,tN:MainThread] Retrieved datatype module galaxy.datatypes.images:Tiff from the datatype registry for extension btf. galaxy.datatypes.registry DEBUG 2024-02-23 12:54:49,632 [pN:main,p:69576,tN:MainThread] Retrieved datatype module galaxy.datatypes.images:Tiff from the datatype registry for extension tif. galaxy.datatypes.registry DEBUG 2024-02-23 12:54:49,633 [pN:main,p:69576,tN:MainThread] Retrieved datatype module galaxy.datatypes.images:Tiff from the datatype registry for extension svs. galaxy.datatypes.registry DEBUG 2024-02-23 12:54:49,633 [pN:main,p:69576,tN:MainThread] Retrieved datatype module galaxy.datatypes.images:Tiff from the datatype registry for extension scn. galaxy.datatypes.registry DEBUG 2024-02-23 12:54:49,633 [pN:main,p:69576,tN:MainThread] Retrieved datatype module galaxy.datatypes.images:Tiff from the datatype registry for extension bif. galaxy.datatypes.registry DEBUG 2024-02-23 12:54:49,633 [pN:main,p:69576,tN:MainThread] Retrieved datatype module galaxy.datatypes.images:OMETiff from the datatype registry for extension ome.tiff. galaxy.datatypes.registry DEBUG 2024-02-23 12:54:49,633 [pN:main,p:69576,tN:MainThread] Retrieved datatype module galaxy.datatypes.images:Hamamatsu from the datatype registry for extension vms. galaxy.datatypes.registry DEBUG 2024-02-23 12:54:49,633 [pN:main,p:69576,tN:MainThread] Retrieved datatype module galaxy.datatypes.images:Hamamatsu from the datatype registry for extension vmu. galaxy.datatypes.registry DEBUG 2024-02-23 12:54:49,633 [pN:main,p:69576,tN:MainThread] Retrieved datatype module galaxy.datatypes.images:Hamamatsu from the datatype registry for extension ndpi. galaxy.datatypes.registry DEBUG 2024-02-23 12:54:49,633 [pN:main,p:69576,tN:MainThread] Retrieved datatype module galaxy.datatypes.images:Mirax from the datatype registry for extension mrxs. galaxy.datatypes.registry DEBUG 2024-02-23 12:54:49,633 [pN:main,p:69576,tN:MainThread] Retrieved datatype module galaxy.datatypes.images:Sakura from the datatype registry for extension svslide. galaxy.datatypes.registry DEBUG 2024-02-23 12:54:49,634 [pN:main,p:69576,tN:MainThread] Retrieved datatype module galaxy.datatypes.images:Bmp from the datatype registry for extension bmp. galaxy.datatypes.registry DEBUG 2024-02-23 12:54:49,634 [pN:main,p:69576,tN:MainThread] Retrieved datatype module galaxy.datatypes.images:Im from the datatype registry for extension im. galaxy.datatypes.registry DEBUG 2024-02-23 12:54:49,634 [pN:main,p:69576,tN:MainThread] Retrieved datatype module galaxy.datatypes.images:Pcd from the datatype registry for extension pcd. galaxy.datatypes.registry DEBUG 2024-02-23 12:54:49,634 [pN:main,p:69576,tN:MainThread] Retrieved datatype module galaxy.datatypes.images:Pcx from the datatype registry for extension pcx. galaxy.datatypes.registry DEBUG 2024-02-23 12:54:49,634 [pN:main,p:69576,tN:MainThread] Retrieved datatype module galaxy.datatypes.images:Ppm from the datatype registry for extension ppm. galaxy.datatypes.registry DEBUG 2024-02-23 12:54:49,634 [pN:main,p:69576,tN:MainThread] Retrieved datatype module galaxy.datatypes.images:Psd from the datatype registry for extension psd. galaxy.datatypes.registry DEBUG 2024-02-23 12:54:49,634 [pN:main,p:69576,tN:MainThread] Retrieved datatype module galaxy.datatypes.images:Xbm from the datatype registry for extension xbm. galaxy.datatypes.registry DEBUG 2024-02-23 12:54:49,634 [pN:main,p:69576,tN:MainThread] Retrieved datatype module galaxy.datatypes.images:Xpm from the datatype registry for extension xpm. galaxy.datatypes.registry DEBUG 2024-02-23 12:54:49,634 [pN:main,p:69576,tN:MainThread] Retrieved datatype module galaxy.datatypes.images:Rgb from the datatype registry for extension rgb. galaxy.datatypes.registry DEBUG 2024-02-23 12:54:49,634 [pN:main,p:69576,tN:MainThread] Retrieved datatype module galaxy.datatypes.images:Pbm from the datatype registry for extension pbm. galaxy.datatypes.registry DEBUG 2024-02-23 12:54:49,634 [pN:main,p:69576,tN:MainThread] Retrieved datatype module galaxy.datatypes.images:Pgm from the datatype registry for extension pgm. galaxy.datatypes.registry DEBUG 2024-02-23 12:54:49,635 [pN:main,p:69576,tN:MainThread] Retrieved datatype module galaxy.datatypes.images:Nrrd from the datatype registry for extension nrrd. galaxy.datatypes.registry DEBUG 2024-02-23 12:54:49,635 [pN:main,p:69576,tN:MainThread] Retrieved datatype module galaxy.datatypes.images:Nrrd from the datatype registry for extension nhdr. galaxy.datatypes.registry DEBUG 2024-02-23 12:54:49,635 [pN:main,p:69576,tN:MainThread] Retrieved datatype module galaxy.datatypes.sequence:RNADotPlotMatrix from the datatype registry for extension rna_eps. galaxy.datatypes.registry DEBUG 2024-02-23 12:54:49,635 [pN:main,p:69576,tN:MainThread] Retrieved datatype module galaxy.datatypes.qiime2:QIIME2Artifact from the datatype registry for extension qza. galaxy.datatypes.registry DEBUG 2024-02-23 12:54:49,636 [pN:main,p:69576,tN:MainThread] Retrieved datatype module galaxy.datatypes.qiime2:QIIME2Visualization from the datatype registry for extension qzv. galaxy.datatypes.registry DEBUG 2024-02-23 12:54:49,636 [pN:main,p:69576,tN:MainThread] Retrieved datatype module galaxy.datatypes.qiime2:QIIME2Metadata from the datatype registry for extension qiime2.tabular. galaxy.datatypes.registry DEBUG 2024-02-23 12:54:49,636 [pN:main,p:69576,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:CompressedZipArchive from the datatype registry for extension zip. galaxy.datatypes.registry DEBUG 2024-02-23 12:54:49,636 [pN:main,p:69576,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:CompressedZipArchive from the datatype registry for extension ncbi_genome_dataset.zip. galaxy.datatypes.registry DEBUG 2024-02-23 12:54:49,636 [pN:main,p:69576,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:CompressedArchive from the datatype registry for extension tar. galaxy.datatypes.registry DEBUG 2024-02-23 12:54:49,636 [pN:main,p:69576,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:Directory from the datatype registry for extension directory. galaxy.datatypes.registry DEBUG 2024-02-23 12:54:49,636 [pN:main,p:69576,tN:MainThread] Retrieved datatype module galaxy.datatypes.text:Yaml from the datatype registry for extension yaml. galaxy.datatypes.registry DEBUG 2024-02-23 12:54:49,636 [pN:main,p:69576,tN:MainThread] Retrieved datatype module galaxy.datatypes.tabular:Tabular from the datatype registry for extension mrm. galaxy.datatypes.registry DEBUG 2024-02-23 12:54:49,639 [pN:main,p:69576,tN:MainThread] Retrieved datatype module galaxy.datatypes.proteomics:Dta from the datatype registry for extension dta. galaxy.datatypes.registry DEBUG 2024-02-23 12:54:49,639 [pN:main,p:69576,tN:MainThread] Retrieved datatype module galaxy.datatypes.proteomics:Dta2d from the datatype registry for extension dta2d. galaxy.datatypes.registry DEBUG 2024-02-23 12:54:49,639 [pN:main,p:69576,tN:MainThread] Retrieved datatype module galaxy.datatypes.proteomics:Edta from the datatype registry for extension edta. galaxy.datatypes.registry DEBUG 2024-02-23 12:54:49,639 [pN:main,p:69576,tN:MainThread] Retrieved datatype module galaxy.datatypes.proteomics:PepXml from the datatype registry for extension pepxml. galaxy.datatypes.registry DEBUG 2024-02-23 12:54:49,639 [pN:main,p:69576,tN:MainThread] Retrieved datatype module galaxy.datatypes.proteomics:PepXml from the datatype registry for extension raw_pepxml. galaxy.datatypes.registry DEBUG 2024-02-23 12:54:49,639 [pN:main,p:69576,tN:MainThread] Retrieved datatype module galaxy.datatypes.proteomics:PepXml from the datatype registry for extension peptideprophet_pepxml. galaxy.datatypes.registry DEBUG 2024-02-23 12:54:49,639 [pN:main,p:69576,tN:MainThread] Retrieved datatype module galaxy.datatypes.proteomics:PepXml from the datatype registry for extension interprophet_pepxml. galaxy.datatypes.registry DEBUG 2024-02-23 12:54:49,639 [pN:main,p:69576,tN:MainThread] Retrieved datatype module galaxy.datatypes.proteomics:ProtXML from the datatype registry for extension protxml. galaxy.datatypes.registry DEBUG 2024-02-23 12:54:49,640 [pN:main,p:69576,tN:MainThread] Retrieved datatype module galaxy.datatypes.proteomics:ParamXml from the datatype registry for extension paramxml. galaxy.datatypes.registry DEBUG 2024-02-23 12:54:49,640 [pN:main,p:69576,tN:MainThread] Retrieved datatype module galaxy.datatypes.proteomics:Kroenik from the datatype registry for extension kroenik. galaxy.datatypes.registry DEBUG 2024-02-23 12:54:49,640 [pN:main,p:69576,tN:MainThread] Retrieved datatype module galaxy.datatypes.proteomics:PepList from the datatype registry for extension peplist. galaxy.datatypes.registry DEBUG 2024-02-23 12:54:49,640 [pN:main,p:69576,tN:MainThread] Retrieved datatype module galaxy.datatypes.proteomics:PSMS from the datatype registry for extension psms. galaxy.datatypes.registry DEBUG 2024-02-23 12:54:49,640 [pN:main,p:69576,tN:MainThread] Retrieved datatype module galaxy.datatypes.proteomics:PepXmlReport from the datatype registry for extension pepxml.tsv. galaxy.datatypes.registry DEBUG 2024-02-23 12:54:49,640 [pN:main,p:69576,tN:MainThread] Retrieved datatype module galaxy.datatypes.proteomics:ProtXmlReport from the datatype registry for extension protxml.tsv. galaxy.datatypes.registry DEBUG 2024-02-23 12:54:49,640 [pN:main,p:69576,tN:MainThread] Retrieved datatype module galaxy.datatypes.proteomics:MascotDat from the datatype registry for extension mascotdat. galaxy.datatypes.registry DEBUG 2024-02-23 12:54:49,640 [pN:main,p:69576,tN:MainThread] Retrieved datatype module galaxy.datatypes.proteomics:MzIdentML from the datatype registry for extension mzid. galaxy.datatypes.registry DEBUG 2024-02-23 12:54:49,640 [pN:main,p:69576,tN:MainThread] Retrieved datatype module galaxy.datatypes.proteomics:IdXML from the datatype registry for extension idxml. galaxy.datatypes.registry DEBUG 2024-02-23 12:54:49,640 [pN:main,p:69576,tN:MainThread] Retrieved datatype module galaxy.datatypes.proteomics:TandemXML from the datatype registry for extension tandem. galaxy.datatypes.registry DEBUG 2024-02-23 12:54:49,640 [pN:main,p:69576,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension sirius.ms. galaxy.datatypes.registry DEBUG 2024-02-23 12:54:49,641 [pN:main,p:69576,tN:MainThread] Retrieved datatype module galaxy.datatypes.proteomics:ThermoRAW from the datatype registry for extension thermo.raw. galaxy.datatypes.registry DEBUG 2024-02-23 12:54:49,641 [pN:main,p:69576,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:BafTar from the datatype registry for extension brukerbaf.d.tar. galaxy.datatypes.registry DEBUG 2024-02-23 12:54:49,641 [pN:main,p:69576,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:YepTar from the datatype registry for extension agilentbrukeryep.d.tar. galaxy.datatypes.registry DEBUG 2024-02-23 12:54:49,641 [pN:main,p:69576,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:TdfTar from the datatype registry for extension brukertdf.d.tar. galaxy.datatypes.registry DEBUG 2024-02-23 12:54:49,641 [pN:main,p:69576,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:MassHunterTar from the datatype registry for extension agilentmasshunter.d.tar. galaxy.datatypes.registry DEBUG 2024-02-23 12:54:49,641 [pN:main,p:69576,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:MassLynxTar from the datatype registry for extension watersmasslynx.raw.tar. galaxy.datatypes.registry DEBUG 2024-02-23 12:54:49,641 [pN:main,p:69576,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:WiffTar from the datatype registry for extension wiff.tar. galaxy.datatypes.registry DEBUG 2024-02-23 12:54:49,641 [pN:main,p:69576,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:Wiff2Tar from the datatype registry for extension wiff2.tar. galaxy.datatypes.registry DEBUG 2024-02-23 12:54:49,641 [pN:main,p:69576,tN:MainThread] Retrieved datatype module galaxy.datatypes.proteomics:MascotXML from the datatype registry for extension mascotxml. galaxy.datatypes.registry DEBUG 2024-02-23 12:54:49,641 [pN:main,p:69576,tN:MainThread] Retrieved datatype module galaxy.datatypes.proteomics:MzTab from the datatype registry for extension mztab. galaxy.datatypes.registry DEBUG 2024-02-23 12:54:49,642 [pN:main,p:69576,tN:MainThread] Retrieved datatype module galaxy.datatypes.proteomics:MzTab2 from the datatype registry for extension mztab2. galaxy.datatypes.registry DEBUG 2024-02-23 12:54:49,642 [pN:main,p:69576,tN:MainThread] Retrieved datatype module galaxy.datatypes.proteomics:MzML from the datatype registry for extension mzml. galaxy.datatypes.registry DEBUG 2024-02-23 12:54:49,642 [pN:main,p:69576,tN:MainThread] Retrieved datatype module galaxy.datatypes.proteomics:NmrML from the datatype registry for extension nmrml. galaxy.datatypes.registry DEBUG 2024-02-23 12:54:49,642 [pN:main,p:69576,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:Meryldb from the datatype registry for extension meryldb. galaxy.datatypes.registry DEBUG 2024-02-23 12:54:49,642 [pN:main,p:69576,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:Bref3 from the datatype registry for extension bref3. galaxy.datatypes.registry DEBUG 2024-02-23 12:54:49,642 [pN:main,p:69576,tN:MainThread] Retrieved datatype module galaxy.datatypes.proteomics:Mgf from the datatype registry for extension mgf. galaxy.datatypes.registry DEBUG 2024-02-23 12:54:49,642 [pN:main,p:69576,tN:MainThread] Retrieved datatype module galaxy.datatypes.proteomics:Wiff from the datatype registry for extension wiff. galaxy.datatypes.registry DEBUG 2024-02-23 12:54:49,642 [pN:main,p:69576,tN:MainThread] Retrieved datatype module galaxy.datatypes.proteomics:Wiff2 from the datatype registry for extension wiff2. galaxy.datatypes.registry DEBUG 2024-02-23 12:54:49,642 [pN:main,p:69576,tN:MainThread] Retrieved datatype module galaxy.datatypes.proteomics:MzXML from the datatype registry for extension mzxml. galaxy.datatypes.registry DEBUG 2024-02-23 12:54:49,642 [pN:main,p:69576,tN:MainThread] Retrieved datatype module galaxy.datatypes.proteomics:MzData from the datatype registry for extension mzdata. galaxy.datatypes.registry DEBUG 2024-02-23 12:54:49,643 [pN:main,p:69576,tN:MainThread] Retrieved datatype module galaxy.datatypes.proteomics:Ms2 from the datatype registry for extension ms2. galaxy.datatypes.registry DEBUG 2024-02-23 12:54:49,643 [pN:main,p:69576,tN:MainThread] Retrieved datatype module galaxy.datatypes.proteomics:MzQuantML from the datatype registry for extension mzq. galaxy.datatypes.registry DEBUG 2024-02-23 12:54:49,643 [pN:main,p:69576,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:SQlite from the datatype registry for extension sqlite. galaxy.datatypes.registry DEBUG 2024-02-23 12:54:49,643 [pN:main,p:69576,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:MzSQlite from the datatype registry for extension mz.sqlite. galaxy.datatypes.registry DEBUG 2024-02-23 12:54:49,643 [pN:main,p:69576,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:OSW from the datatype registry for extension osw. galaxy.datatypes.registry DEBUG 2024-02-23 12:54:49,643 [pN:main,p:69576,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:PQP from the datatype registry for extension pqp. galaxy.datatypes.registry DEBUG 2024-02-23 12:54:49,643 [pN:main,p:69576,tN:MainThread] Retrieved datatype module galaxy.datatypes.proteomics:TraML from the datatype registry for extension traml. galaxy.datatypes.registry DEBUG 2024-02-23 12:54:49,643 [pN:main,p:69576,tN:MainThread] Retrieved datatype module galaxy.datatypes.proteomics:TrafoXML from the datatype registry for extension trafoxml. galaxy.datatypes.registry DEBUG 2024-02-23 12:54:49,643 [pN:main,p:69576,tN:MainThread] Retrieved datatype module galaxy.datatypes.proteomics:FeatureXML from the datatype registry for extension featurexml. galaxy.datatypes.registry DEBUG 2024-02-23 12:54:49,643 [pN:main,p:69576,tN:MainThread] Retrieved datatype module galaxy.datatypes.proteomics:ConsensusXML from the datatype registry for extension consensusxml. galaxy.datatypes.registry DEBUG 2024-02-23 12:54:49,644 [pN:main,p:69576,tN:MainThread] Retrieved datatype module galaxy.datatypes.proteomics:UniProtXML from the datatype registry for extension uniprotxml. galaxy.datatypes.registry DEBUG 2024-02-23 12:54:49,644 [pN:main,p:69576,tN:MainThread] Retrieved datatype module galaxy.datatypes.proteomics:XquestXML from the datatype registry for extension xquest.xml. galaxy.datatypes.registry DEBUG 2024-02-23 12:54:49,644 [pN:main,p:69576,tN:MainThread] Retrieved datatype module galaxy.datatypes.proteomics:XquestSpecXML from the datatype registry for extension spec.xml. galaxy.datatypes.registry DEBUG 2024-02-23 12:54:49,644 [pN:main,p:69576,tN:MainThread] Retrieved datatype module galaxy.datatypes.proteomics:QCML from the datatype registry for extension qcml. galaxy.datatypes.registry DEBUG 2024-02-23 12:54:49,644 [pN:main,p:69576,tN:MainThread] Retrieved datatype module galaxy.datatypes.text:Json from the datatype registry for extension mzqc. galaxy.datatypes.registry DEBUG 2024-02-23 12:54:49,644 [pN:main,p:69576,tN:MainThread] Retrieved datatype module galaxy.datatypes.proteomics:Msp from the datatype registry for extension msp. galaxy.datatypes.registry DEBUG 2024-02-23 12:54:49,644 [pN:main,p:69576,tN:MainThread] Retrieved datatype module galaxy.datatypes.proteomics:SPLibNoIndex from the datatype registry for extension splib_noindex. galaxy.datatypes.registry DEBUG 2024-02-23 12:54:49,644 [pN:main,p:69576,tN:MainThread] Retrieved datatype module galaxy.datatypes.proteomics:SPLib from the datatype registry for extension splib. galaxy.datatypes.registry DEBUG 2024-02-23 12:54:49,644 [pN:main,p:69576,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:BlibSQlite from the datatype registry for extension blib. galaxy.datatypes.registry DEBUG 2024-02-23 12:54:49,644 [pN:main,p:69576,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:DlibSQlite from the datatype registry for extension dlib. galaxy.datatypes.registry DEBUG 2024-02-23 12:54:49,645 [pN:main,p:69576,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:ElibSQlite from the datatype registry for extension elib. galaxy.datatypes.registry DEBUG 2024-02-23 12:54:49,645 [pN:main,p:69576,tN:MainThread] Retrieved datatype module galaxy.datatypes.proteomics:XHunterAslFormat from the datatype registry for extension hlf. galaxy.datatypes.registry DEBUG 2024-02-23 12:54:49,645 [pN:main,p:69576,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:IdpDB from the datatype registry for extension idpdb. galaxy.datatypes.registry DEBUG 2024-02-23 12:54:49,645 [pN:main,p:69576,tN:MainThread] Retrieved datatype module galaxy.datatypes.proteomics:Sf3 from the datatype registry for extension sf3. galaxy.datatypes.registry DEBUG 2024-02-23 12:54:49,645 [pN:main,p:69576,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:Binary from the datatype registry for extension cps. galaxy.datatypes.registry DEBUG 2024-02-23 12:54:49,645 [pN:main,p:69576,tN:MainThread] Retrieved datatype module galaxy.datatypes.tabular:ConnectivityTable from the datatype registry for extension ct. galaxy.datatypes.registry DEBUG 2024-02-23 12:54:49,645 [pN:main,p:69576,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:PostgresqlArchive from the datatype registry for extension postgresql. galaxy.datatypes.registry DEBUG 2024-02-23 12:54:49,645 [pN:main,p:69576,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:MongoDBArchive from the datatype registry for extension mongodb. galaxy.datatypes.registry DEBUG 2024-02-23 12:54:49,645 [pN:main,p:69576,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:GeneNoteBook from the datatype registry for extension genenotebook. galaxy.datatypes.registry DEBUG 2024-02-23 12:54:49,645 [pN:main,p:69576,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:SearchGuiArchive from the datatype registry for extension searchgui_archive. galaxy.datatypes.registry DEBUG 2024-02-23 12:54:49,645 [pN:main,p:69576,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:Fast5Archive from the datatype registry for extension fast5.tar. galaxy.datatypes.registry DEBUG 2024-02-23 12:54:49,646 [pN:main,p:69576,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:Fast5ArchiveGz from the datatype registry for extension fast5.tar.gz. galaxy.datatypes.registry DEBUG 2024-02-23 12:54:49,646 [pN:main,p:69576,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:Fast5ArchiveBz2 from the datatype registry for extension fast5.tar.bz2. galaxy.datatypes.registry DEBUG 2024-02-23 12:54:49,646 [pN:main,p:69576,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:CompressedArchive from the datatype registry for extension peptideshaker_archive. galaxy.datatypes.registry DEBUG 2024-02-23 12:54:49,646 [pN:main,p:69576,tN:MainThread] Retrieved datatype module galaxy.datatypes.tabular:Tabular from the datatype registry for extension percin. galaxy.datatypes.registry DEBUG 2024-02-23 12:54:49,646 [pN:main,p:69576,tN:MainThread] Retrieved datatype module galaxy.datatypes.xml:GenericXml from the datatype registry for extension percout. galaxy.datatypes.registry DEBUG 2024-02-23 12:54:49,646 [pN:main,p:69576,tN:MainThread] Retrieved datatype module galaxy.datatypes.tabular:Tabular from the datatype registry for extension hardklor. galaxy.datatypes.registry DEBUG 2024-02-23 12:54:49,646 [pN:main,p:69576,tN:MainThread] Retrieved datatype module galaxy.datatypes.tabular:Tabular from the datatype registry for extension kronik. galaxy.datatypes.registry DEBUG 2024-02-23 12:54:49,646 [pN:main,p:69576,tN:MainThread] Retrieved datatype module galaxy.datatypes.proteomics:ImzML from the datatype registry for extension imzml. galaxy.datatypes.registry DEBUG 2024-02-23 12:54:49,646 [pN:main,p:69576,tN:MainThread] Retrieved datatype module galaxy.datatypes.images:Analyze75 from the datatype registry for extension analyze75. galaxy.datatypes.registry DEBUG 2024-02-23 12:54:49,647 [pN:main,p:69576,tN:MainThread] Retrieved datatype module galaxy.datatypes.images:Nifti1 from the datatype registry for extension nii1. galaxy.datatypes.registry DEBUG 2024-02-23 12:54:49,647 [pN:main,p:69576,tN:MainThread] Retrieved datatype module galaxy.datatypes.images:Nifti2 from the datatype registry for extension nii2. galaxy.datatypes.registry DEBUG 2024-02-23 12:54:49,647 [pN:main,p:69576,tN:MainThread] Retrieved datatype module galaxy.datatypes.images:Gifti from the datatype registry for extension gii. galaxy.datatypes.registry DEBUG 2024-02-23 12:54:49,647 [pN:main,p:69576,tN:MainThread] Retrieved datatype module galaxy.datatypes.images:Tck from the datatype registry for extension tck. galaxy.datatypes.registry DEBUG 2024-02-23 12:54:49,647 [pN:main,p:69576,tN:MainThread] Retrieved datatype module galaxy.datatypes.images:Trk from the datatype registry for extension trk. galaxy.datatypes.registry DEBUG 2024-02-23 12:54:49,647 [pN:main,p:69576,tN:MainThread] Retrieved datatype module galaxy.datatypes.images:Mrc2014 from the datatype registry for extension mrc. galaxy.datatypes.registry DEBUG 2024-02-23 12:54:49,647 [pN:main,p:69576,tN:MainThread] Retrieved datatype module galaxy.datatypes.images:Star from the datatype registry for extension star. galaxy.datatypes.registry DEBUG 2024-02-23 12:54:49,647 [pN:main,p:69576,tN:MainThread] Retrieved datatype module galaxy.datatypes.proteomics:PEFF from the datatype registry for extension peff. galaxy.datatypes.registry DEBUG 2024-02-23 12:54:49,648 [pN:main,p:69576,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension toml. galaxy.datatypes.registry DEBUG 2024-02-23 12:54:49,648 [pN:main,p:69576,tN:MainThread] Retrieved datatype module galaxy.datatypes.flow:FCS from the datatype registry for extension fcs. galaxy.datatypes.registry DEBUG 2024-02-23 12:54:49,648 [pN:main,p:69576,tN:MainThread] Retrieved datatype module galaxy.datatypes.tabular:Tabular from the datatype registry for extension flowtext. galaxy.datatypes.registry DEBUG 2024-02-23 12:54:49,648 [pN:main,p:69576,tN:MainThread] Retrieved datatype module galaxy.datatypes.tabular:Tabular from the datatype registry for extension flowclr. galaxy.datatypes.registry DEBUG 2024-02-23 12:54:49,648 [pN:main,p:69576,tN:MainThread] Retrieved datatype module galaxy.datatypes.tabular:Tabular from the datatype registry for extension flowmfi. galaxy.datatypes.registry DEBUG 2024-02-23 12:54:49,648 [pN:main,p:69576,tN:MainThread] Retrieved datatype module galaxy.datatypes.tabular:Tabular from the datatype registry for extension flowstat1. galaxy.datatypes.registry DEBUG 2024-02-23 12:54:49,649 [pN:main,p:69576,tN:MainThread] Retrieved datatype module galaxy.datatypes.tabular:Tabular from the datatype registry for extension flowstat2. galaxy.datatypes.registry DEBUG 2024-02-23 12:54:49,649 [pN:main,p:69576,tN:MainThread] Retrieved datatype module galaxy.datatypes.tabular:Tabular from the datatype registry for extension flowstat3. galaxy.datatypes.registry DEBUG 2024-02-23 12:54:49,649 [pN:main,p:69576,tN:MainThread] Retrieved datatype module galaxy.datatypes.tabular:Tabular from the datatype registry for extension flowscore. galaxy.datatypes.registry DEBUG 2024-02-23 12:54:49,649 [pN:main,p:69576,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:RData from the datatype registry for extension flowframe. galaxy.datatypes.registry DEBUG 2024-02-23 12:54:49,649 [pN:main,p:69576,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:RData from the datatype registry for extension fsom. galaxy.datatypes.registry DEBUG 2024-02-23 12:54:49,649 [pN:main,p:69576,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:RData from the datatype registry for extension flowset. galaxy.datatypes.registry DEBUG 2024-02-23 12:54:49,650 [pN:main,p:69576,tN:MainThread] Retrieved datatype module galaxy.datatypes.tabular:Tabular from the datatype registry for extension metacyto_clr.txt. galaxy.datatypes.registry DEBUG 2024-02-23 12:54:49,650 [pN:main,p:69576,tN:MainThread] Retrieved datatype module galaxy.datatypes.metacyto:mSummary from the datatype registry for extension metacyto_summary.txt. galaxy.datatypes.registry DEBUG 2024-02-23 12:54:49,650 [pN:main,p:69576,tN:MainThread] Retrieved datatype module galaxy.datatypes.metacyto:mStats from the datatype registry for extension metacyto_stats.txt. galaxy.datatypes.registry DEBUG 2024-02-23 12:54:49,650 [pN:main,p:69576,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:CompressedArchive from the datatype registry for extension deeptools_compute_matrix_archive. galaxy.datatypes.registry DEBUG 2024-02-23 12:54:49,650 [pN:main,p:69576,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:CompressedArchive from the datatype registry for extension deeptools_coverage_matrix. galaxy.datatypes.registry DEBUG 2024-02-23 12:54:49,650 [pN:main,p:69576,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:NetCDF from the datatype registry for extension netcdf. galaxy.datatypes.registry DEBUG 2024-02-23 12:54:49,651 [pN:main,p:69576,tN:MainThread] Retrieved datatype module galaxy.datatypes.images:Eps from the datatype registry for extension eps. galaxy.datatypes.registry DEBUG 2024-02-23 12:54:49,651 [pN:main,p:69576,tN:MainThread] Retrieved datatype module galaxy.datatypes.images:Rast from the datatype registry for extension rast. galaxy.datatypes.registry DEBUG 2024-02-23 12:54:49,651 [pN:main,p:69576,tN:MainThread] Retrieved datatype module galaxy.datatypes.images:Laj from the datatype registry for extension laj. galaxy.datatypes.registry DEBUG 2024-02-23 12:54:49,651 [pN:main,p:69576,tN:MainThread] Retrieved datatype module galaxy.datatypes.sequence:Lav from the datatype registry for extension lav. galaxy.datatypes.registry DEBUG 2024-02-23 12:54:49,651 [pN:main,p:69576,tN:MainThread] Retrieved datatype module galaxy.datatypes.sequence:Maf from the datatype registry for extension maf. galaxy.datatypes.registry DEBUG 2024-02-23 12:54:49,651 [pN:main,p:69576,tN:MainThread] Retrieved datatype module galaxy.datatypes.sequence:MafCustomTrack from the datatype registry for extension mafcustomtrack. galaxy.datatypes.registry DEBUG 2024-02-23 12:54:49,651 [pN:main,p:69576,tN:MainThread] Retrieved datatype module galaxy.datatypes.tabular:MatrixMarket from the datatype registry for extension mtx. galaxy.datatypes.registry DEBUG 2024-02-23 12:54:49,651 [pN:main,p:69576,tN:MainThread] Retrieved datatype module galaxy.datatypes.tabular:CMAP from the datatype registry for extension cmap. galaxy.datatypes.registry DEBUG 2024-02-23 12:54:49,651 [pN:main,p:69576,tN:MainThread] Retrieved datatype module galaxy.datatypes.interval:ENCODEPeak from the datatype registry for extension encodepeak. galaxy.datatypes.registry DEBUG 2024-02-23 12:54:49,651 [pN:main,p:69576,tN:MainThread] Retrieved datatype module galaxy.datatypes.images:Pdf from the datatype registry for extension pdf. galaxy.datatypes.registry DEBUG 2024-02-23 12:54:49,652 [pN:main,p:69576,tN:MainThread] Retrieved datatype module galaxy.datatypes.tabular:Pileup from the datatype registry for extension pileup. galaxy.datatypes.registry DEBUG 2024-02-23 12:54:49,652 [pN:main,p:69576,tN:MainThread] Retrieved datatype module galaxy.datatypes.tabular:Psl from the datatype registry for extension psl. galaxy.datatypes.registry DEBUG 2024-02-23 12:54:49,652 [pN:main,p:69576,tN:MainThread] Retrieved datatype module galaxy.datatypes.text:Obo from the datatype registry for extension obo. galaxy.datatypes.registry DEBUG 2024-02-23 12:54:49,652 [pN:main,p:69576,tN:MainThread] Retrieved datatype module galaxy.datatypes.xml:Owl from the datatype registry for extension owl. galaxy.datatypes.registry DEBUG 2024-02-23 12:54:49,652 [pN:main,p:69576,tN:MainThread] Retrieved datatype module galaxy.datatypes.images:Png from the datatype registry for extension png. galaxy.datatypes.registry DEBUG 2024-02-23 12:54:49,652 [pN:main,p:69576,tN:MainThread] Retrieved datatype module galaxy.datatypes.qualityscore:QualityScore from the datatype registry for extension qual. galaxy.datatypes.registry DEBUG 2024-02-23 12:54:49,652 [pN:main,p:69576,tN:MainThread] Retrieved datatype module galaxy.datatypes.qualityscore:QualityScoreSolexa from the datatype registry for extension qualsolexa. galaxy.datatypes.registry DEBUG 2024-02-23 12:54:49,652 [pN:main,p:69576,tN:MainThread] Retrieved datatype module galaxy.datatypes.qualityscore:QualityScoreIllumina from the datatype registry for extension qualillumina. galaxy.datatypes.registry DEBUG 2024-02-23 12:54:49,652 [pN:main,p:69576,tN:MainThread] Retrieved datatype module galaxy.datatypes.qualityscore:QualityScoreSOLiD from the datatype registry for extension qualsolid. galaxy.datatypes.registry DEBUG 2024-02-23 12:54:49,652 [pN:main,p:69576,tN:MainThread] Retrieved datatype module galaxy.datatypes.qualityscore:QualityScore454 from the datatype registry for extension qual454. galaxy.datatypes.registry DEBUG 2024-02-23 12:54:49,652 [pN:main,p:69576,tN:MainThread] Retrieved datatype module galaxy.datatypes.assembly:Roadmaps from the datatype registry for extension roadmaps. galaxy.datatypes.registry DEBUG 2024-02-23 12:54:49,653 [pN:main,p:69576,tN:MainThread] Retrieved datatype module galaxy.datatypes.tabular:Sam from the datatype registry for extension sam. galaxy.datatypes.registry DEBUG 2024-02-23 12:54:49,653 [pN:main,p:69576,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:Scf from the datatype registry for extension scf. galaxy.datatypes.registry DEBUG 2024-02-23 12:54:49,653 [pN:main,p:69576,tN:MainThread] Retrieved datatype module galaxy.datatypes.assembly:Sequences from the datatype registry for extension sequences. galaxy.datatypes.registry DEBUG 2024-02-23 12:54:49,653 [pN:main,p:69576,tN:MainThread] Retrieved datatype module galaxy.datatypes.text:SnpEffDb from the datatype registry for extension snpeffdb. galaxy.datatypes.registry DEBUG 2024-02-23 12:54:49,653 [pN:main,p:69576,tN:MainThread] Retrieved datatype module galaxy.datatypes.text:SnpSiftDbNSFP from the datatype registry for extension snpsiftdbnsfp. galaxy.datatypes.registry DEBUG 2024-02-23 12:54:49,653 [pN:main,p:69576,tN:MainThread] Retrieved datatype module galaxy.datatypes.tabular:Tabular from the datatype registry for extension dbnsfp.tabular. galaxy.datatypes.registry DEBUG 2024-02-23 12:54:49,653 [pN:main,p:69576,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:Sff from the datatype registry for extension sff. galaxy.datatypes.registry DEBUG 2024-02-23 12:54:49,653 [pN:main,p:69576,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:Sra from the datatype registry for extension sra. galaxy.datatypes.registry DEBUG 2024-02-23 12:54:49,653 [pN:main,p:69576,tN:MainThread] Retrieved datatype module galaxy.datatypes.tabular:SraManifest from the datatype registry for extension sra_manifest.tabular. galaxy.datatypes.registry DEBUG 2024-02-23 12:54:49,654 [pN:main,p:69576,tN:MainThread] Retrieved datatype module galaxy.datatypes.xml:GenericXml from the datatype registry for extension svg. galaxy.datatypes.registry DEBUG 2024-02-23 12:54:49,654 [pN:main,p:69576,tN:MainThread] Retrieved datatype module galaxy.datatypes.tabular:Taxonomy from the datatype registry for extension taxonomy. galaxy.datatypes.registry DEBUG 2024-02-23 12:54:49,654 [pN:main,p:69576,tN:MainThread] Retrieved datatype module galaxy.datatypes.tabular:Tabular from the datatype registry for extension tabular. galaxy.datatypes.registry DEBUG 2024-02-23 12:54:49,654 [pN:main,p:69576,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:TwoBit from the datatype registry for extension twobit. galaxy.datatypes.registry DEBUG 2024-02-23 12:54:49,654 [pN:main,p:69576,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:SQmass from the datatype registry for extension sqmass. galaxy.datatypes.registry DEBUG 2024-02-23 12:54:49,654 [pN:main,p:69576,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:GeminiSQLite from the datatype registry for extension gemini.sqlite. galaxy.datatypes.registry DEBUG 2024-02-23 12:54:49,654 [pN:main,p:69576,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:ChiraSQLite from the datatype registry for extension chira.sqlite. galaxy.datatypes.registry DEBUG 2024-02-23 12:54:49,654 [pN:main,p:69576,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:CuffDiffSQlite from the datatype registry for extension cuffdiff.sqlite. galaxy.datatypes.registry DEBUG 2024-02-23 12:54:49,654 [pN:main,p:69576,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:GAFASQLite from the datatype registry for extension gafa.sqlite. galaxy.datatypes.registry DEBUG 2024-02-23 12:54:49,655 [pN:main,p:69576,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:NcbiTaxonomySQlite from the datatype registry for extension ncbitaxonomy.sqlite. galaxy.datatypes.registry DEBUG 2024-02-23 12:54:49,655 [pN:main,p:69576,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension txt. galaxy.datatypes.registry DEBUG 2024-02-23 12:54:49,655 [pN:main,p:69576,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:LineCount from the datatype registry for extension linecount. galaxy.datatypes.registry DEBUG 2024-02-23 12:54:49,655 [pN:main,p:69576,tN:MainThread] Retrieved datatype module galaxy.datatypes.sequence:MemePsp from the datatype registry for extension memepsp. galaxy.datatypes.registry DEBUG 2024-02-23 12:54:49,655 [pN:main,p:69576,tN:MainThread] Retrieved datatype module galaxy.datatypes.xml:MEMEXml from the datatype registry for extension memexml. galaxy.datatypes.registry DEBUG 2024-02-23 12:54:49,655 [pN:main,p:69576,tN:MainThread] Retrieved datatype module galaxy.datatypes.xml:CisML from the datatype registry for extension cisml. galaxy.datatypes.registry DEBUG 2024-02-23 12:54:49,655 [pN:main,p:69576,tN:MainThread] Retrieved datatype module galaxy.datatypes.xml:GenericXml from the datatype registry for extension xml. galaxy.datatypes.registry DEBUG 2024-02-23 12:54:49,655 [pN:main,p:69576,tN:MainThread] Retrieved datatype module galaxy.datatypes.xml:GenericXml from the datatype registry for extension xsd. galaxy.datatypes.registry DEBUG 2024-02-23 12:54:49,655 [pN:main,p:69576,tN:MainThread] Retrieved datatype module galaxy.datatypes.xml:Dzi from the datatype registry for extension dzi. galaxy.datatypes.registry DEBUG 2024-02-23 12:54:49,655 [pN:main,p:69576,tN:MainThread] Retrieved datatype module galaxy.datatypes.tabular:Vcf from the datatype registry for extension vcf. galaxy.datatypes.registry DEBUG 2024-02-23 12:54:49,656 [pN:main,p:69576,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:Bcf from the datatype registry for extension bcf. galaxy.datatypes.registry DEBUG 2024-02-23 12:54:49,656 [pN:main,p:69576,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:Bcf from the datatype registry for extension bcf_bgzip. galaxy.datatypes.registry DEBUG 2024-02-23 12:54:49,657 [pN:main,p:69576,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:BcfUncompressed from the datatype registry for extension bcf_uncompressed. galaxy.datatypes.registry DEBUG 2024-02-23 12:54:49,657 [pN:main,p:69576,tN:MainThread] Retrieved datatype module galaxy.datatypes.assembly:Velvet from the datatype registry for extension velvet. galaxy.datatypes.registry DEBUG 2024-02-23 12:54:49,657 [pN:main,p:69576,tN:MainThread] Retrieved datatype module galaxy.datatypes.interval:Wiggle from the datatype registry for extension wig. galaxy.datatypes.registry DEBUG 2024-02-23 12:54:49,657 [pN:main,p:69576,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:Binary from the datatype registry for extension interval_index. galaxy.datatypes.registry DEBUG 2024-02-23 12:54:49,657 [pN:main,p:69576,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:Binary from the datatype registry for extension odgi. galaxy.datatypes.registry DEBUG 2024-02-23 12:54:49,658 [pN:main,p:69576,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:CompressedArchive from the datatype registry for extension vg. galaxy.datatypes.registry DEBUG 2024-02-23 12:54:49,658 [pN:main,p:69576,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:Binary from the datatype registry for extension xg. galaxy.datatypes.registry DEBUG 2024-02-23 12:54:49,658 [pN:main,p:69576,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:Binary from the datatype registry for extension protobuf2. galaxy.datatypes.registry DEBUG 2024-02-23 12:54:49,658 [pN:main,p:69576,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:Binary from the datatype registry for extension protobuf3. galaxy.datatypes.registry DEBUG 2024-02-23 12:54:49,658 [pN:main,p:69576,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:Binary from the datatype registry for extension onnx. galaxy.datatypes.registry DEBUG 2024-02-23 12:54:49,658 [pN:main,p:69576,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:Binary from the datatype registry for extension tabix. galaxy.datatypes.registry DEBUG 2024-02-23 12:54:49,658 [pN:main,p:69576,tN:MainThread] Retrieved datatype module galaxy.datatypes.interval:IntervalTabix from the datatype registry for extension interval_tabix.gz. galaxy.datatypes.registry DEBUG 2024-02-23 12:54:49,658 [pN:main,p:69576,tN:MainThread] Retrieved datatype module galaxy.datatypes.interval:JuicerMediumTabix from the datatype registry for extension juicer_medium_tabix.gz. galaxy.datatypes.registry DEBUG 2024-02-23 12:54:49,658 [pN:main,p:69576,tN:MainThread] Retrieved datatype module galaxy.datatypes.interval:BedTabix from the datatype registry for extension bed_tabix.gz. galaxy.datatypes.registry DEBUG 2024-02-23 12:54:49,659 [pN:main,p:69576,tN:MainThread] Retrieved datatype module galaxy.datatypes.interval:GffTabix from the datatype registry for extension gff_tabix.gz. galaxy.datatypes.registry DEBUG 2024-02-23 12:54:49,659 [pN:main,p:69576,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:Binary from the datatype registry for extension bgzip. galaxy.datatypes.registry DEBUG 2024-02-23 12:54:49,659 [pN:main,p:69576,tN:MainThread] Retrieved datatype module galaxy.datatypes.tabular:VcfGz from the datatype registry for extension vcf_bgzip. galaxy.datatypes.registry DEBUG 2024-02-23 12:54:49,659 [pN:main,p:69576,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:Binary from the datatype registry for extension bus. galaxy.datatypes.registry DEBUG 2024-02-23 12:54:49,659 [pN:main,p:69576,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:Binary from the datatype registry for extension kallisto.idx. galaxy.datatypes.registry DEBUG 2024-02-23 12:54:49,659 [pN:main,p:69576,tN:MainThread] Retrieved datatype module galaxy.datatypes.xml:Phyloxml from the datatype registry for extension phyloxml. galaxy.datatypes.registry DEBUG 2024-02-23 12:54:49,659 [pN:main,p:69576,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:Newick from the datatype registry for extension newick. galaxy.datatypes.registry DEBUG 2024-02-23 12:54:49,659 [pN:main,p:69576,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:Newick from the datatype registry for extension nhx. galaxy.datatypes.registry DEBUG 2024-02-23 12:54:49,659 [pN:main,p:69576,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:Nexus from the datatype registry for extension nex. galaxy.datatypes.registry DEBUG 2024-02-23 12:54:49,660 [pN:main,p:69576,tN:MainThread] Retrieved datatype module galaxy.datatypes.text:IQTree from the datatype registry for extension iqtree. galaxy.datatypes.registry DEBUG 2024-02-23 12:54:49,661 [pN:main,p:69576,tN:MainThread] Retrieved datatype module galaxy.datatypes.mothur:SquareDistanceMatrix from the datatype registry for extension mldist. galaxy.datatypes.registry DEBUG 2024-02-23 12:54:49,664 [pN:main,p:69576,tN:MainThread] Retrieved datatype module galaxy.datatypes.genetics:Affybatch from the datatype registry for extension affybatch. galaxy.datatypes.registry DEBUG 2024-02-23 12:54:49,664 [pN:main,p:69576,tN:MainThread] Retrieved datatype module galaxy.datatypes.genetics:Eigenstratgeno from the datatype registry for extension eigenstratgeno. galaxy.datatypes.registry DEBUG 2024-02-23 12:54:49,664 [pN:main,p:69576,tN:MainThread] Retrieved datatype module galaxy.datatypes.genetics:Eigenstratpca from the datatype registry for extension eigenstratpca. galaxy.datatypes.registry DEBUG 2024-02-23 12:54:49,664 [pN:main,p:69576,tN:MainThread] Retrieved datatype module galaxy.datatypes.genetics:Eset from the datatype registry for extension eset. galaxy.datatypes.registry DEBUG 2024-02-23 12:54:49,664 [pN:main,p:69576,tN:MainThread] Retrieved datatype module galaxy.datatypes.genetics:Fped from the datatype registry for extension fped. galaxy.datatypes.registry DEBUG 2024-02-23 12:54:49,664 [pN:main,p:69576,tN:MainThread] Retrieved datatype module galaxy.datatypes.genetics:Fphe from the datatype registry for extension fphe. galaxy.datatypes.registry DEBUG 2024-02-23 12:54:49,664 [pN:main,p:69576,tN:MainThread] Retrieved datatype module galaxy.datatypes.genetics:GenomeGraphs from the datatype registry for extension gg. galaxy.datatypes.registry DEBUG 2024-02-23 12:54:49,665 [pN:main,p:69576,tN:MainThread] Retrieved datatype module galaxy.datatypes.genetics:ldIndep from the datatype registry for extension ldindep. galaxy.datatypes.registry DEBUG 2024-02-23 12:54:49,665 [pN:main,p:69576,tN:MainThread] Retrieved datatype module galaxy.datatypes.genetics:MAlist from the datatype registry for extension malist. galaxy.datatypes.registry DEBUG 2024-02-23 12:54:49,665 [pN:main,p:69576,tN:MainThread] Retrieved datatype module galaxy.datatypes.genetics:Lped from the datatype registry for extension lped. galaxy.datatypes.registry DEBUG 2024-02-23 12:54:49,665 [pN:main,p:69576,tN:MainThread] Retrieved datatype module galaxy.datatypes.genetics:Pbed from the datatype registry for extension pbed. galaxy.datatypes.registry DEBUG 2024-02-23 12:54:49,665 [pN:main,p:69576,tN:MainThread] Retrieved datatype module galaxy.datatypes.genetics:Pheno from the datatype registry for extension pheno. galaxy.datatypes.registry DEBUG 2024-02-23 12:54:49,665 [pN:main,p:69576,tN:MainThread] Retrieved datatype module galaxy.datatypes.genetics:Pphe from the datatype registry for extension pphe. galaxy.datatypes.registry DEBUG 2024-02-23 12:54:49,665 [pN:main,p:69576,tN:MainThread] Retrieved datatype module galaxy.datatypes.genetics:RexpBase from the datatype registry for extension rexpbase. galaxy.datatypes.registry DEBUG 2024-02-23 12:54:49,665 [pN:main,p:69576,tN:MainThread] Retrieved datatype module galaxy.datatypes.genetics:Rgenetics from the datatype registry for extension rgenetics. galaxy.datatypes.registry DEBUG 2024-02-23 12:54:49,665 [pN:main,p:69576,tN:MainThread] Retrieved datatype module galaxy.datatypes.genetics:Snptest from the datatype registry for extension snptest. galaxy.datatypes.registry DEBUG 2024-02-23 12:54:49,666 [pN:main,p:69576,tN:MainThread] Retrieved datatype module galaxy.datatypes.genetics:SNPMatrix from the datatype registry for extension snpmatrix. galaxy.datatypes.registry DEBUG 2024-02-23 12:54:49,666 [pN:main,p:69576,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:ExcelXls from the datatype registry for extension xls. galaxy.datatypes.registry DEBUG 2024-02-23 12:54:49,666 [pN:main,p:69576,tN:MainThread] Retrieved datatype module galaxy.datatypes.text:Ipynb from the datatype registry for extension ipynb. galaxy.datatypes.registry DEBUG 2024-02-23 12:54:49,666 [pN:main,p:69576,tN:MainThread] Retrieved datatype module galaxy.datatypes.text:Json from the datatype registry for extension json. galaxy.datatypes.registry DEBUG 2024-02-23 12:54:49,666 [pN:main,p:69576,tN:MainThread] Retrieved datatype module galaxy.datatypes.text:ExpressionJson from the datatype registry for extension expression.json. galaxy.datatypes.registry DEBUG 2024-02-23 12:54:49,667 [pN:main,p:69576,tN:MainThread] Retrieved datatype module galaxy.datatypes.graph:Xgmml from the datatype registry for extension xgmml. galaxy.datatypes.registry DEBUG 2024-02-23 12:54:49,667 [pN:main,p:69576,tN:MainThread] Retrieved datatype module galaxy.datatypes.graph:Sif from the datatype registry for extension sif. galaxy.datatypes.registry DEBUG 2024-02-23 12:54:49,668 [pN:main,p:69576,tN:MainThread] Retrieved datatype module galaxy.datatypes.triples:Triples from the datatype registry for extension triples. galaxy.datatypes.registry DEBUG 2024-02-23 12:54:49,668 [pN:main,p:69576,tN:MainThread] Retrieved datatype module galaxy.datatypes.triples:HDT from the datatype registry for extension hdt. galaxy.datatypes.registry DEBUG 2024-02-23 12:54:49,668 [pN:main,p:69576,tN:MainThread] Retrieved datatype module galaxy.datatypes.triples:NTriples from the datatype registry for extension nt. galaxy.datatypes.registry DEBUG 2024-02-23 12:54:49,668 [pN:main,p:69576,tN:MainThread] Retrieved datatype module galaxy.datatypes.triples:N3 from the datatype registry for extension n3. galaxy.datatypes.registry DEBUG 2024-02-23 12:54:49,668 [pN:main,p:69576,tN:MainThread] Retrieved datatype module galaxy.datatypes.triples:Turtle from the datatype registry for extension ttl. galaxy.datatypes.registry DEBUG 2024-02-23 12:54:49,668 [pN:main,p:69576,tN:MainThread] Retrieved datatype module galaxy.datatypes.triples:Rdf from the datatype registry for extension rdf. galaxy.datatypes.registry DEBUG 2024-02-23 12:54:49,668 [pN:main,p:69576,tN:MainThread] Retrieved datatype module galaxy.datatypes.triples:Jsonld from the datatype registry for extension jsonld. galaxy.datatypes.registry DEBUG 2024-02-23 12:54:49,669 [pN:main,p:69576,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:ExcelXls from the datatype registry for extension excel.xls. galaxy.datatypes.registry DEBUG 2024-02-23 12:54:49,669 [pN:main,p:69576,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:Xlsx from the datatype registry for extension xlsx. galaxy.datatypes.registry DEBUG 2024-02-23 12:54:49,669 [pN:main,p:69576,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:Binary from the datatype registry for extension docx. galaxy.datatypes.registry DEBUG 2024-02-23 12:54:49,669 [pN:main,p:69576,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension btwisted. galaxy.datatypes.registry DEBUG 2024-02-23 12:54:49,669 [pN:main,p:69576,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension cai. galaxy.datatypes.registry DEBUG 2024-02-23 12:54:49,669 [pN:main,p:69576,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension cat_db. galaxy.datatypes.registry DEBUG 2024-02-23 12:54:49,669 [pN:main,p:69576,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension charge. galaxy.datatypes.registry DEBUG 2024-02-23 12:54:49,669 [pN:main,p:69576,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension checktrans. galaxy.datatypes.registry DEBUG 2024-02-23 12:54:49,670 [pN:main,p:69576,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension chips. galaxy.datatypes.registry DEBUG 2024-02-23 12:54:49,670 [pN:main,p:69576,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension codcmp. galaxy.datatypes.registry DEBUG 2024-02-23 12:54:49,670 [pN:main,p:69576,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension coderet. galaxy.datatypes.registry DEBUG 2024-02-23 12:54:49,670 [pN:main,p:69576,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension compseq. galaxy.datatypes.registry DEBUG 2024-02-23 12:54:49,670 [pN:main,p:69576,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension cpgplot. galaxy.datatypes.registry DEBUG 2024-02-23 12:54:49,670 [pN:main,p:69576,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension cpgreport. galaxy.datatypes.registry DEBUG 2024-02-23 12:54:49,670 [pN:main,p:69576,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension cusp. galaxy.datatypes.registry DEBUG 2024-02-23 12:54:49,670 [pN:main,p:69576,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension cut. galaxy.datatypes.registry DEBUG 2024-02-23 12:54:49,670 [pN:main,p:69576,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension dan. galaxy.datatypes.registry DEBUG 2024-02-23 12:54:49,671 [pN:main,p:69576,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension digest. galaxy.datatypes.registry DEBUG 2024-02-23 12:54:49,671 [pN:main,p:69576,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension dreg. galaxy.datatypes.registry DEBUG 2024-02-23 12:54:49,671 [pN:main,p:69576,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension einverted. galaxy.datatypes.registry DEBUG 2024-02-23 12:54:49,671 [pN:main,p:69576,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension epestfind. galaxy.datatypes.registry DEBUG 2024-02-23 12:54:49,671 [pN:main,p:69576,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension equicktandem. galaxy.datatypes.registry DEBUG 2024-02-23 12:54:49,671 [pN:main,p:69576,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension est2genome. galaxy.datatypes.registry DEBUG 2024-02-23 12:54:49,671 [pN:main,p:69576,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension etandem. galaxy.datatypes.registry DEBUG 2024-02-23 12:54:49,671 [pN:main,p:69576,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension freak. galaxy.datatypes.registry DEBUG 2024-02-23 12:54:49,671 [pN:main,p:69576,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension fuzznuc. galaxy.datatypes.registry DEBUG 2024-02-23 12:54:49,672 [pN:main,p:69576,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension fuzzpro. galaxy.datatypes.registry DEBUG 2024-02-23 12:54:49,672 [pN:main,p:69576,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension fuzztran. galaxy.datatypes.registry DEBUG 2024-02-23 12:54:49,672 [pN:main,p:69576,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension garnier. galaxy.datatypes.registry DEBUG 2024-02-23 12:54:49,672 [pN:main,p:69576,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension geecee. galaxy.datatypes.registry DEBUG 2024-02-23 12:54:49,672 [pN:main,p:69576,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension helixturnhelix. galaxy.datatypes.registry DEBUG 2024-02-23 12:54:49,672 [pN:main,p:69576,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension hmoment. galaxy.datatypes.registry DEBUG 2024-02-23 12:54:49,672 [pN:main,p:69576,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension isochore. galaxy.datatypes.registry DEBUG 2024-02-23 12:54:49,672 [pN:main,p:69576,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension match. galaxy.datatypes.registry DEBUG 2024-02-23 12:54:49,672 [pN:main,p:69576,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension nametable. galaxy.datatypes.registry DEBUG 2024-02-23 12:54:49,673 [pN:main,p:69576,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension needle. galaxy.datatypes.registry DEBUG 2024-02-23 12:54:49,673 [pN:main,p:69576,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension newcpgreport. galaxy.datatypes.registry DEBUG 2024-02-23 12:54:49,673 [pN:main,p:69576,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension newcpgseek. galaxy.datatypes.registry DEBUG 2024-02-23 12:54:49,673 [pN:main,p:69576,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension noreturn. galaxy.datatypes.registry DEBUG 2024-02-23 12:54:49,673 [pN:main,p:69576,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension palindrome. galaxy.datatypes.registry DEBUG 2024-02-23 12:54:49,673 [pN:main,p:69576,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension pepcoil. galaxy.datatypes.registry DEBUG 2024-02-23 12:54:49,673 [pN:main,p:69576,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension pepinfo. galaxy.datatypes.registry DEBUG 2024-02-23 12:54:49,673 [pN:main,p:69576,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension pepstats. galaxy.datatypes.registry DEBUG 2024-02-23 12:54:49,673 [pN:main,p:69576,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension polydot. galaxy.datatypes.registry DEBUG 2024-02-23 12:54:49,674 [pN:main,p:69576,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension preg. galaxy.datatypes.registry DEBUG 2024-02-23 12:54:49,674 [pN:main,p:69576,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension prettyseq. galaxy.datatypes.registry DEBUG 2024-02-23 12:54:49,674 [pN:main,p:69576,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension primersearch. galaxy.datatypes.registry DEBUG 2024-02-23 12:54:49,674 [pN:main,p:69576,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension showfeat. galaxy.datatypes.registry DEBUG 2024-02-23 12:54:49,674 [pN:main,p:69576,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension showorf. galaxy.datatypes.registry DEBUG 2024-02-23 12:54:49,674 [pN:main,p:69576,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension sixpack. galaxy.datatypes.registry DEBUG 2024-02-23 12:54:49,674 [pN:main,p:69576,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension strider. galaxy.datatypes.registry DEBUG 2024-02-23 12:54:49,674 [pN:main,p:69576,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension supermatcher. galaxy.datatypes.registry DEBUG 2024-02-23 12:54:49,674 [pN:main,p:69576,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension syco. galaxy.datatypes.registry DEBUG 2024-02-23 12:54:49,675 [pN:main,p:69576,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension textsearch. galaxy.datatypes.registry DEBUG 2024-02-23 12:54:49,675 [pN:main,p:69576,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension vectorstrip. galaxy.datatypes.registry DEBUG 2024-02-23 12:54:49,675 [pN:main,p:69576,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension wobble. galaxy.datatypes.registry DEBUG 2024-02-23 12:54:49,675 [pN:main,p:69576,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension wordcount. galaxy.datatypes.registry DEBUG 2024-02-23 12:54:49,675 [pN:main,p:69576,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension dbmotif. galaxy.datatypes.registry DEBUG 2024-02-23 12:54:49,675 [pN:main,p:69576,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension diffseq. galaxy.datatypes.registry DEBUG 2024-02-23 12:54:49,675 [pN:main,p:69576,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension excel. galaxy.datatypes.registry DEBUG 2024-02-23 12:54:49,675 [pN:main,p:69576,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension feattable. galaxy.datatypes.registry DEBUG 2024-02-23 12:54:49,675 [pN:main,p:69576,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension motif. galaxy.datatypes.registry DEBUG 2024-02-23 12:54:49,676 [pN:main,p:69576,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension regions. galaxy.datatypes.registry DEBUG 2024-02-23 12:54:49,676 [pN:main,p:69576,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension seqtable. galaxy.datatypes.registry DEBUG 2024-02-23 12:54:49,676 [pN:main,p:69576,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension simple. galaxy.datatypes.registry DEBUG 2024-02-23 12:54:49,676 [pN:main,p:69576,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension table. galaxy.datatypes.registry DEBUG 2024-02-23 12:54:49,676 [pN:main,p:69576,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension tagseq. galaxy.datatypes.registry DEBUG 2024-02-23 12:54:49,676 [pN:main,p:69576,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension acedb. galaxy.datatypes.registry DEBUG 2024-02-23 12:54:49,676 [pN:main,p:69576,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension clustal. galaxy.datatypes.registry DEBUG 2024-02-23 12:54:49,676 [pN:main,p:69576,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension codata. galaxy.datatypes.registry DEBUG 2024-02-23 12:54:49,676 [pN:main,p:69576,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension embl. galaxy.datatypes.registry DEBUG 2024-02-23 12:54:49,677 [pN:main,p:69576,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension fitch. galaxy.datatypes.registry DEBUG 2024-02-23 12:54:49,677 [pN:main,p:69576,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension gcg. galaxy.datatypes.registry DEBUG 2024-02-23 12:54:49,677 [pN:main,p:69576,tN:MainThread] Retrieved datatype module galaxy.datatypes.sequence:Genbank from the datatype registry for extension genbank. galaxy.datatypes.registry DEBUG 2024-02-23 12:54:49,677 [pN:main,p:69576,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension hennig86. galaxy.datatypes.registry DEBUG 2024-02-23 12:54:49,677 [pN:main,p:69576,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension ig. galaxy.datatypes.registry DEBUG 2024-02-23 12:54:49,677 [pN:main,p:69576,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension jackknifer. galaxy.datatypes.registry DEBUG 2024-02-23 12:54:49,677 [pN:main,p:69576,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension jackknifernon. galaxy.datatypes.registry DEBUG 2024-02-23 12:54:49,677 [pN:main,p:69576,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension mega. galaxy.datatypes.registry DEBUG 2024-02-23 12:54:49,678 [pN:main,p:69576,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension meganon. galaxy.datatypes.registry DEBUG 2024-02-23 12:54:49,678 [pN:main,p:69576,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension ncbi. galaxy.datatypes.registry DEBUG 2024-02-23 12:54:49,678 [pN:main,p:69576,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension nexus. galaxy.datatypes.registry DEBUG 2024-02-23 12:54:49,678 [pN:main,p:69576,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension nexusnon. galaxy.datatypes.registry DEBUG 2024-02-23 12:54:49,678 [pN:main,p:69576,tN:MainThread] Retrieved datatype module galaxy.datatypes.phylip:Phylip from the datatype registry for extension phylip. galaxy.datatypes.registry DEBUG 2024-02-23 12:54:49,678 [pN:main,p:69576,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension phylipnon. galaxy.datatypes.registry DEBUG 2024-02-23 12:54:49,679 [pN:main,p:69576,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension pir. galaxy.datatypes.registry DEBUG 2024-02-23 12:54:49,679 [pN:main,p:69576,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension staden. galaxy.datatypes.registry DEBUG 2024-02-23 12:54:49,679 [pN:main,p:69576,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension swiss. galaxy.datatypes.registry DEBUG 2024-02-23 12:54:49,680 [pN:main,p:69576,tN:MainThread] Retrieved datatype module galaxy.datatypes.msa:Msf from the datatype registry for extension msf. galaxy.datatypes.registry DEBUG 2024-02-23 12:54:49,680 [pN:main,p:69576,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension markx0. galaxy.datatypes.registry DEBUG 2024-02-23 12:54:49,680 [pN:main,p:69576,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension markx1. galaxy.datatypes.registry DEBUG 2024-02-23 12:54:49,680 [pN:main,p:69576,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension markx10. galaxy.datatypes.registry DEBUG 2024-02-23 12:54:49,680 [pN:main,p:69576,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension markx2. galaxy.datatypes.registry DEBUG 2024-02-23 12:54:49,680 [pN:main,p:69576,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension markx3. galaxy.datatypes.registry DEBUG 2024-02-23 12:54:49,681 [pN:main,p:69576,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension pair. galaxy.datatypes.registry DEBUG 2024-02-23 12:54:49,681 [pN:main,p:69576,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension score. galaxy.datatypes.registry DEBUG 2024-02-23 12:54:49,681 [pN:main,p:69576,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension srs. galaxy.datatypes.registry DEBUG 2024-02-23 12:54:49,681 [pN:main,p:69576,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension srspair. galaxy.datatypes.registry DEBUG 2024-02-23 12:54:49,681 [pN:main,p:69576,tN:MainThread] Retrieved datatype module galaxy.datatypes.annotation:SnapHmm from the datatype registry for extension snaphmm. galaxy.datatypes.registry DEBUG 2024-02-23 12:54:49,682 [pN:main,p:69576,tN:MainThread] Retrieved datatype module galaxy.datatypes.annotation:Augustus from the datatype registry for extension augustus. galaxy.datatypes.registry DEBUG 2024-02-23 12:54:49,682 [pN:main,p:69576,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:ICM from the datatype registry for extension icm. galaxy.datatypes.registry DEBUG 2024-02-23 12:54:49,682 [pN:main,p:69576,tN:MainThread] Retrieved datatype module galaxy.datatypes.msa:InfernalCM from the datatype registry for extension cm. galaxy.datatypes.registry DEBUG 2024-02-23 12:54:49,682 [pN:main,p:69576,tN:MainThread] Retrieved datatype module galaxy.datatypes.msa:Hmmer2 from the datatype registry for extension hmm2. galaxy.datatypes.registry DEBUG 2024-02-23 12:54:49,682 [pN:main,p:69576,tN:MainThread] Retrieved datatype module galaxy.datatypes.msa:Hmmer3 from the datatype registry for extension hmm3. galaxy.datatypes.registry DEBUG 2024-02-23 12:54:49,682 [pN:main,p:69576,tN:MainThread] Retrieved datatype module galaxy.datatypes.msa:Stockholm_1_0 from the datatype registry for extension stockholm. galaxy.datatypes.registry DEBUG 2024-02-23 12:54:49,682 [pN:main,p:69576,tN:MainThread] Retrieved datatype module galaxy.datatypes.msa:MauveXmfa from the datatype registry for extension xmfa. galaxy.datatypes.registry DEBUG 2024-02-23 12:54:49,683 [pN:main,p:69576,tN:MainThread] Retrieved datatype module galaxy.datatypes.microarrays:Cel from the datatype registry for extension cel. galaxy.datatypes.registry DEBUG 2024-02-23 12:54:49,683 [pN:main,p:69576,tN:MainThread] Retrieved datatype module galaxy.datatypes.microarrays:Gpr from the datatype registry for extension gpr. galaxy.datatypes.registry DEBUG 2024-02-23 12:54:49,683 [pN:main,p:69576,tN:MainThread] Retrieved datatype module galaxy.datatypes.microarrays:Gal from the datatype registry for extension gal. galaxy.datatypes.registry DEBUG 2024-02-23 12:54:49,683 [pN:main,p:69576,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:RDS from the datatype registry for extension rds. galaxy.datatypes.registry DEBUG 2024-02-23 12:54:49,683 [pN:main,p:69576,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:RDS from the datatype registry for extension phyloseq. galaxy.datatypes.registry DEBUG 2024-02-23 12:54:49,683 [pN:main,p:69576,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:RData from the datatype registry for extension rdata. galaxy.datatypes.registry DEBUG 2024-02-23 12:54:49,683 [pN:main,p:69576,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:RData from the datatype registry for extension rdata.sce. galaxy.datatypes.registry DEBUG 2024-02-23 12:54:49,683 [pN:main,p:69576,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:RData from the datatype registry for extension rdata.xcms.raw. galaxy.datatypes.registry DEBUG 2024-02-23 12:54:49,684 [pN:main,p:69576,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:RData from the datatype registry for extension rdata.msnbase.raw. galaxy.datatypes.registry DEBUG 2024-02-23 12:54:49,684 [pN:main,p:69576,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:RData from the datatype registry for extension rdata.xcms.findchrompeaks. galaxy.datatypes.registry DEBUG 2024-02-23 12:54:49,684 [pN:main,p:69576,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:RData from the datatype registry for extension rdata.xcms.group. galaxy.datatypes.registry DEBUG 2024-02-23 12:54:49,684 [pN:main,p:69576,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:RData from the datatype registry for extension rdata.xcms.retcor. galaxy.datatypes.registry DEBUG 2024-02-23 12:54:49,684 [pN:main,p:69576,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:RData from the datatype registry for extension rdata.xcms.fillpeaks. galaxy.datatypes.registry DEBUG 2024-02-23 12:54:49,684 [pN:main,p:69576,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:RData from the datatype registry for extension rdata.camera.positive. galaxy.datatypes.registry DEBUG 2024-02-23 12:54:49,684 [pN:main,p:69576,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:RData from the datatype registry for extension rdata.camera.negative. galaxy.datatypes.registry DEBUG 2024-02-23 12:54:49,684 [pN:main,p:69576,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:RData from the datatype registry for extension rdata.camera.quick. galaxy.datatypes.registry DEBUG 2024-02-23 12:54:49,685 [pN:main,p:69576,tN:MainThread] Retrieved datatype module galaxy.datatypes.hdf5:HDF5SummarizedExperiment from the datatype registry for extension rdata.se. galaxy.datatypes.registry DEBUG 2024-02-23 12:54:49,685 [pN:main,p:69576,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:Binary from the datatype registry for extension rdock_as. galaxy.datatypes.registry DEBUG 2024-02-23 12:54:49,685 [pN:main,p:69576,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:OxliCountGraph from the datatype registry for extension oxlicg. galaxy.datatypes.registry DEBUG 2024-02-23 12:54:49,685 [pN:main,p:69576,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:OxliNodeGraph from the datatype registry for extension oxling. galaxy.datatypes.registry DEBUG 2024-02-23 12:54:49,685 [pN:main,p:69576,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:OxliTagSet from the datatype registry for extension oxlits. galaxy.datatypes.registry DEBUG 2024-02-23 12:54:49,685 [pN:main,p:69576,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:OxliStopTags from the datatype registry for extension oxlist. galaxy.datatypes.registry DEBUG 2024-02-23 12:54:49,685 [pN:main,p:69576,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:OxliSubset from the datatype registry for extension oxliss. galaxy.datatypes.registry DEBUG 2024-02-23 12:54:49,686 [pN:main,p:69576,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:OxliGraphLabels from the datatype registry for extension oxligl. galaxy.datatypes.registry DEBUG 2024-02-23 12:54:49,687 [pN:main,p:69576,tN:MainThread] Retrieved datatype module galaxy.datatypes.constructive_solid_geometry:STL from the datatype registry for extension stl. galaxy.datatypes.registry DEBUG 2024-02-23 12:54:49,687 [pN:main,p:69576,tN:MainThread] Retrieved datatype module galaxy.datatypes.constructive_solid_geometry:PlyAscii from the datatype registry for extension plyascii. galaxy.datatypes.registry DEBUG 2024-02-23 12:54:49,687 [pN:main,p:69576,tN:MainThread] Retrieved datatype module galaxy.datatypes.constructive_solid_geometry:PlyBinary from the datatype registry for extension plybinary. galaxy.datatypes.registry DEBUG 2024-02-23 12:54:49,687 [pN:main,p:69576,tN:MainThread] Retrieved datatype module galaxy.datatypes.constructive_solid_geometry:VtkAscii from the datatype registry for extension vtkascii. galaxy.datatypes.registry DEBUG 2024-02-23 12:54:49,687 [pN:main,p:69576,tN:MainThread] Retrieved datatype module galaxy.datatypes.constructive_solid_geometry:VtkBinary from the datatype registry for extension vtkbinary. galaxy.datatypes.registry DEBUG 2024-02-23 12:54:49,687 [pN:main,p:69576,tN:MainThread] Retrieved datatype module galaxy.datatypes.text:Biom1 from the datatype registry for extension biom1. galaxy.datatypes.registry DEBUG 2024-02-23 12:54:49,688 [pN:main,p:69576,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:Biom2 from the datatype registry for extension biom2. galaxy.datatypes.registry DEBUG 2024-02-23 12:54:49,688 [pN:main,p:69576,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:MashSketch from the datatype registry for extension msh. galaxy.datatypes.registry DEBUG 2024-02-23 12:54:49,688 [pN:main,p:69576,tN:MainThread] Retrieved datatype module galaxy.datatypes.interval:ScIdx from the datatype registry for extension scidx. galaxy.datatypes.registry DEBUG 2024-02-23 12:54:49,690 [pN:main,p:69576,tN:MainThread] Retrieved datatype module galaxy.datatypes.molecules:SMILES from the datatype registry for extension smi. galaxy.datatypes.registry DEBUG 2024-02-23 12:54:49,690 [pN:main,p:69576,tN:MainThread] Retrieved datatype module galaxy.datatypes.molecules:SDF from the datatype registry for extension sdf. galaxy.datatypes.registry DEBUG 2024-02-23 12:54:49,690 [pN:main,p:69576,tN:MainThread] Retrieved datatype module galaxy.datatypes.molecules:InChI from the datatype registry for extension inchi. galaxy.datatypes.registry DEBUG 2024-02-23 12:54:49,690 [pN:main,p:69576,tN:MainThread] Retrieved datatype module galaxy.datatypes.molecules:MOL from the datatype registry for extension mol. galaxy.datatypes.registry DEBUG 2024-02-23 12:54:49,690 [pN:main,p:69576,tN:MainThread] Retrieved datatype module galaxy.datatypes.molecules:MOL2 from the datatype registry for extension mol2. galaxy.datatypes.registry DEBUG 2024-02-23 12:54:49,690 [pN:main,p:69576,tN:MainThread] Retrieved datatype module galaxy.datatypes.molecules:CML from the datatype registry for extension cml. galaxy.datatypes.registry DEBUG 2024-02-23 12:54:49,691 [pN:main,p:69576,tN:MainThread] Retrieved datatype module galaxy.datatypes.molecules:FPS from the datatype registry for extension fps. galaxy.datatypes.registry DEBUG 2024-02-23 12:54:49,691 [pN:main,p:69576,tN:MainThread] Retrieved datatype module galaxy.datatypes.molecules:OBFS from the datatype registry for extension obfs. galaxy.datatypes.registry DEBUG 2024-02-23 12:54:49,691 [pN:main,p:69576,tN:MainThread] Retrieved datatype module galaxy.datatypes.molecules:DRF from the datatype registry for extension drf. galaxy.datatypes.registry DEBUG 2024-02-23 12:54:49,691 [pN:main,p:69576,tN:MainThread] Retrieved datatype module galaxy.datatypes.molecules:PHAR from the datatype registry for extension phar. galaxy.datatypes.registry DEBUG 2024-02-23 12:54:49,691 [pN:main,p:69576,tN:MainThread] Retrieved datatype module galaxy.datatypes.molecules:PDB from the datatype registry for extension pdb. galaxy.datatypes.registry DEBUG 2024-02-23 12:54:49,691 [pN:main,p:69576,tN:MainThread] Retrieved datatype module galaxy.datatypes.molecules:PDBQT from the datatype registry for extension pdbqt. galaxy.datatypes.registry DEBUG 2024-02-23 12:54:49,691 [pN:main,p:69576,tN:MainThread] Retrieved datatype module galaxy.datatypes.molecules:PQR from the datatype registry for extension pqr. galaxy.datatypes.registry DEBUG 2024-02-23 12:54:49,691 [pN:main,p:69576,tN:MainThread] Retrieved datatype module galaxy.datatypes.molecules:Cell from the datatype registry for extension cell. galaxy.datatypes.registry DEBUG 2024-02-23 12:54:49,691 [pN:main,p:69576,tN:MainThread] Retrieved datatype module galaxy.datatypes.molecules:CIF from the datatype registry for extension cif. galaxy.datatypes.registry DEBUG 2024-02-23 12:54:49,691 [pN:main,p:69576,tN:MainThread] Retrieved datatype module galaxy.datatypes.molecules:XYZ from the datatype registry for extension xyz. galaxy.datatypes.registry DEBUG 2024-02-23 12:54:49,691 [pN:main,p:69576,tN:MainThread] Retrieved datatype module galaxy.datatypes.molecules:ExtendedXYZ from the datatype registry for extension extxyz. galaxy.datatypes.registry DEBUG 2024-02-23 12:54:49,692 [pN:main,p:69576,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:Trr from the datatype registry for extension trr. galaxy.datatypes.registry DEBUG 2024-02-23 12:54:49,692 [pN:main,p:69576,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:Dcd from the datatype registry for extension dcd. galaxy.datatypes.registry DEBUG 2024-02-23 12:54:49,692 [pN:main,p:69576,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension top. galaxy.datatypes.registry DEBUG 2024-02-23 12:54:49,692 [pN:main,p:69576,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension prmtop. galaxy.datatypes.registry DEBUG 2024-02-23 12:54:49,692 [pN:main,p:69576,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension itp. galaxy.datatypes.registry DEBUG 2024-02-23 12:54:49,692 [pN:main,p:69576,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension mdp. galaxy.datatypes.registry DEBUG 2024-02-23 12:54:49,692 [pN:main,p:69576,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension ndx. galaxy.datatypes.registry DEBUG 2024-02-23 12:54:49,692 [pN:main,p:69576,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension xvg. galaxy.datatypes.registry DEBUG 2024-02-23 12:54:49,692 [pN:main,p:69576,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:Xtc from the datatype registry for extension xtc. galaxy.datatypes.registry DEBUG 2024-02-23 12:54:49,693 [pN:main,p:69576,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:Cpt from the datatype registry for extension cpt. galaxy.datatypes.registry DEBUG 2024-02-23 12:54:49,693 [pN:main,p:69576,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:Edr from the datatype registry for extension edr. galaxy.datatypes.registry DEBUG 2024-02-23 12:54:49,693 [pN:main,p:69576,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:Binary from the datatype registry for extension tpr. galaxy.datatypes.registry DEBUG 2024-02-23 12:54:49,693 [pN:main,p:69576,tN:MainThread] Retrieved datatype module galaxy.datatypes.molecules:GRO from the datatype registry for extension gro. galaxy.datatypes.registry DEBUG 2024-02-23 12:54:49,693 [pN:main,p:69576,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension inpcrd. galaxy.datatypes.registry DEBUG 2024-02-23 12:54:49,693 [pN:main,p:69576,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:Vel from the datatype registry for extension vel. galaxy.datatypes.registry DEBUG 2024-02-23 12:54:49,693 [pN:main,p:69576,tN:MainThread] Retrieved datatype module galaxy.datatypes.molecules:grd from the datatype registry for extension grd. galaxy.datatypes.registry DEBUG 2024-02-23 12:54:49,693 [pN:main,p:69576,tN:MainThread] Retrieved datatype module galaxy.datatypes.molecules:grdtgz from the datatype registry for extension grd.tgz. galaxy.datatypes.registry DEBUG 2024-02-23 12:54:49,693 [pN:main,p:69576,tN:MainThread] Retrieved datatype module galaxy.datatypes.mothur:Otu from the datatype registry for extension mothur.otu. galaxy.datatypes.registry DEBUG 2024-02-23 12:54:49,694 [pN:main,p:69576,tN:MainThread] Retrieved datatype module galaxy.datatypes.mothur:Otu from the datatype registry for extension mothur.list. galaxy.datatypes.registry DEBUG 2024-02-23 12:54:49,694 [pN:main,p:69576,tN:MainThread] Retrieved datatype module galaxy.datatypes.mothur:Sabund from the datatype registry for extension mothur.sabund. galaxy.datatypes.registry DEBUG 2024-02-23 12:54:49,694 [pN:main,p:69576,tN:MainThread] Retrieved datatype module galaxy.datatypes.mothur:Sabund from the datatype registry for extension mothur.rabund. galaxy.datatypes.registry DEBUG 2024-02-23 12:54:49,694 [pN:main,p:69576,tN:MainThread] Retrieved datatype module galaxy.datatypes.mothur:GroupAbund from the datatype registry for extension mothur.shared. galaxy.datatypes.registry DEBUG 2024-02-23 12:54:49,694 [pN:main,p:69576,tN:MainThread] Retrieved datatype module galaxy.datatypes.mothur:GroupAbund from the datatype registry for extension mothur.relabund. galaxy.datatypes.registry DEBUG 2024-02-23 12:54:49,694 [pN:main,p:69576,tN:MainThread] Retrieved datatype module galaxy.datatypes.mothur:Names from the datatype registry for extension mothur.names. galaxy.datatypes.registry DEBUG 2024-02-23 12:54:49,694 [pN:main,p:69576,tN:MainThread] Retrieved datatype module galaxy.datatypes.mothur:Group from the datatype registry for extension mothur.design. galaxy.datatypes.registry DEBUG 2024-02-23 12:54:49,694 [pN:main,p:69576,tN:MainThread] Retrieved datatype module galaxy.datatypes.mothur:Summary from the datatype registry for extension mothur.summary. galaxy.datatypes.registry DEBUG 2024-02-23 12:54:49,695 [pN:main,p:69576,tN:MainThread] Retrieved datatype module galaxy.datatypes.mothur:Group from the datatype registry for extension mothur.groups. galaxy.datatypes.registry DEBUG 2024-02-23 12:54:49,695 [pN:main,p:69576,tN:MainThread] Retrieved datatype module galaxy.datatypes.mothur:Oligos from the datatype registry for extension mothur.oligos. galaxy.datatypes.registry DEBUG 2024-02-23 12:54:49,695 [pN:main,p:69576,tN:MainThread] Retrieved datatype module galaxy.datatypes.sequence:Fasta from the datatype registry for extension mothur.align. galaxy.datatypes.registry DEBUG 2024-02-23 12:54:49,695 [pN:main,p:69576,tN:MainThread] Retrieved datatype module galaxy.datatypes.mothur:AccNos from the datatype registry for extension mothur.accnos. galaxy.datatypes.registry DEBUG 2024-02-23 12:54:49,695 [pN:main,p:69576,tN:MainThread] Retrieved datatype module galaxy.datatypes.mothur:AccNos from the datatype registry for extension mothur.otulabels. galaxy.datatypes.registry DEBUG 2024-02-23 12:54:49,695 [pN:main,p:69576,tN:MainThread] Retrieved datatype module galaxy.datatypes.tabular:Tabular from the datatype registry for extension mothur.otu.corr. galaxy.datatypes.registry DEBUG 2024-02-23 12:54:49,695 [pN:main,p:69576,tN:MainThread] Retrieved datatype module galaxy.datatypes.mothur:SecondaryStructureMap from the datatype registry for extension mothur.map. galaxy.datatypes.registry DEBUG 2024-02-23 12:54:49,695 [pN:main,p:69576,tN:MainThread] Retrieved datatype module galaxy.datatypes.mothur:AlignCheck from the datatype registry for extension mothur.align.check. galaxy.datatypes.registry DEBUG 2024-02-23 12:54:49,695 [pN:main,p:69576,tN:MainThread] Retrieved datatype module galaxy.datatypes.mothur:AlignReport from the datatype registry for extension mothur.align.report. galaxy.datatypes.registry DEBUG 2024-02-23 12:54:49,695 [pN:main,p:69576,tN:MainThread] Retrieved datatype module galaxy.datatypes.mothur:LaneMask from the datatype registry for extension mothur.filter. galaxy.datatypes.registry DEBUG 2024-02-23 12:54:49,696 [pN:main,p:69576,tN:MainThread] Retrieved datatype module galaxy.datatypes.mothur:DistanceMatrix from the datatype registry for extension mothur.dist. galaxy.datatypes.registry DEBUG 2024-02-23 12:54:49,696 [pN:main,p:69576,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension mothur.tre. galaxy.datatypes.registry DEBUG 2024-02-23 12:54:49,696 [pN:main,p:69576,tN:MainThread] Retrieved datatype module galaxy.datatypes.mothur:PairwiseDistanceMatrix from the datatype registry for extension mothur.pair.dist. galaxy.datatypes.registry DEBUG 2024-02-23 12:54:49,696 [pN:main,p:69576,tN:MainThread] Retrieved datatype module galaxy.datatypes.mothur:SquareDistanceMatrix from the datatype registry for extension mothur.square.dist. galaxy.datatypes.registry DEBUG 2024-02-23 12:54:49,696 [pN:main,p:69576,tN:MainThread] Retrieved datatype module galaxy.datatypes.mothur:LowerTriangleDistanceMatrix from the datatype registry for extension mothur.lower.dist. galaxy.datatypes.registry DEBUG 2024-02-23 12:54:49,696 [pN:main,p:69576,tN:MainThread] Retrieved datatype module galaxy.datatypes.mothur:RefTaxonomy from the datatype registry for extension mothur.ref.taxonomy. galaxy.datatypes.registry DEBUG 2024-02-23 12:54:49,696 [pN:main,p:69576,tN:MainThread] Retrieved datatype module galaxy.datatypes.mothur:RefTaxonomy from the datatype registry for extension mothur.seq.taxonomy. galaxy.datatypes.registry DEBUG 2024-02-23 12:54:49,696 [pN:main,p:69576,tN:MainThread] Retrieved datatype module galaxy.datatypes.mothur:RefTaxonomy from the datatype registry for extension mothur.rdp.taxonomy. galaxy.datatypes.registry DEBUG 2024-02-23 12:54:49,696 [pN:main,p:69576,tN:MainThread] Retrieved datatype module galaxy.datatypes.mothur:ConsensusTaxonomy from the datatype registry for extension mothur.cons.taxonomy. galaxy.datatypes.registry DEBUG 2024-02-23 12:54:49,697 [pN:main,p:69576,tN:MainThread] Retrieved datatype module galaxy.datatypes.mothur:TaxonomySummary from the datatype registry for extension mothur.tax.summary. galaxy.datatypes.registry DEBUG 2024-02-23 12:54:49,697 [pN:main,p:69576,tN:MainThread] Retrieved datatype module galaxy.datatypes.mothur:Frequency from the datatype registry for extension mothur.freq. galaxy.datatypes.registry DEBUG 2024-02-23 12:54:49,697 [pN:main,p:69576,tN:MainThread] Retrieved datatype module galaxy.datatypes.mothur:Quantile from the datatype registry for extension mothur.quan. galaxy.datatypes.registry DEBUG 2024-02-23 12:54:49,697 [pN:main,p:69576,tN:MainThread] Retrieved datatype module galaxy.datatypes.mothur:Quantile from the datatype registry for extension mothur.filtered.quan. galaxy.datatypes.registry DEBUG 2024-02-23 12:54:49,697 [pN:main,p:69576,tN:MainThread] Retrieved datatype module galaxy.datatypes.mothur:Quantile from the datatype registry for extension mothur.masked.quan. galaxy.datatypes.registry DEBUG 2024-02-23 12:54:49,697 [pN:main,p:69576,tN:MainThread] Retrieved datatype module galaxy.datatypes.mothur:Quantile from the datatype registry for extension mothur.filtered.masked.quan. galaxy.datatypes.registry DEBUG 2024-02-23 12:54:49,697 [pN:main,p:69576,tN:MainThread] Retrieved datatype module galaxy.datatypes.mothur:Axes from the datatype registry for extension mothur.axes. galaxy.datatypes.registry DEBUG 2024-02-23 12:54:49,697 [pN:main,p:69576,tN:MainThread] Retrieved datatype module galaxy.datatypes.mothur:SffFlow from the datatype registry for extension mothur.sff.flow. galaxy.datatypes.registry DEBUG 2024-02-23 12:54:49,697 [pN:main,p:69576,tN:MainThread] Retrieved datatype module galaxy.datatypes.mothur:CountTable from the datatype registry for extension mothur.count_table. galaxy.datatypes.registry DEBUG 2024-02-23 12:54:49,698 [pN:main,p:69576,tN:MainThread] Retrieved datatype module galaxy.datatypes.neo4j:Neo4jDB from the datatype registry for extension neostore. galaxy.datatypes.registry DEBUG 2024-02-23 12:54:49,698 [pN:main,p:69576,tN:MainThread] Retrieved datatype module galaxy.datatypes.neo4j:Neo4jDBzip from the datatype registry for extension neostore.zip. galaxy.datatypes.registry DEBUG 2024-02-23 12:54:49,698 [pN:main,p:69576,tN:MainThread] Retrieved datatype module galaxy.datatypes.tracks:UCSCTrackHub from the datatype registry for extension trackhub. galaxy.datatypes.registry DEBUG 2024-02-23 12:54:49,699 [pN:main,p:69576,tN:MainThread] Retrieved datatype module galaxy.datatypes.blast:BlastXml from the datatype registry for extension blastxml. galaxy.datatypes.registry DEBUG 2024-02-23 12:54:49,699 [pN:main,p:69576,tN:MainThread] Retrieved datatype module galaxy.datatypes.blast:BlastNucDb from the datatype registry for extension blastdbn. galaxy.datatypes.registry DEBUG 2024-02-23 12:54:49,699 [pN:main,p:69576,tN:MainThread] Retrieved datatype module galaxy.datatypes.blast:BlastProtDb from the datatype registry for extension blastdbp. galaxy.datatypes.registry DEBUG 2024-02-23 12:54:49,700 [pN:main,p:69576,tN:MainThread] Retrieved datatype module galaxy.datatypes.blast:BlastDomainDb from the datatype registry for extension blastdbd. galaxy.datatypes.registry DEBUG 2024-02-23 12:54:49,700 [pN:main,p:69576,tN:MainThread] Retrieved datatype module galaxy.datatypes.blast:LastDb from the datatype registry for extension lastdb. galaxy.datatypes.registry DEBUG 2024-02-23 12:54:49,700 [pN:main,p:69576,tN:MainThread] Retrieved datatype module galaxy.datatypes.blast:BlastNucDb5 from the datatype registry for extension blastdbn5. galaxy.datatypes.registry DEBUG 2024-02-23 12:54:49,700 [pN:main,p:69576,tN:MainThread] Retrieved datatype module galaxy.datatypes.blast:BlastProtDb5 from the datatype registry for extension blastdbp5. galaxy.datatypes.registry DEBUG 2024-02-23 12:54:49,700 [pN:main,p:69576,tN:MainThread] Retrieved datatype module galaxy.datatypes.blast:BlastDomainDb5 from the datatype registry for extension blastdbd5. galaxy.datatypes.registry DEBUG 2024-02-23 12:54:49,700 [pN:main,p:69576,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:GenericAsn1 from the datatype registry for extension maskinfo-asn1. galaxy.datatypes.registry DEBUG 2024-02-23 12:54:49,700 [pN:main,p:69576,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:GenericAsn1Binary from the datatype registry for extension maskinfo-asn1-binary. galaxy.datatypes.registry DEBUG 2024-02-23 12:54:49,700 [pN:main,p:69576,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:GenericAsn1 from the datatype registry for extension pssm-asn1. galaxy.datatypes.registry DEBUG 2024-02-23 12:54:49,701 [pN:main,p:69576,tN:MainThread] Retrieved datatype module galaxy.datatypes.plant_tribes:PlantTribesKsComponents from the datatype registry for extension ptkscmp. galaxy.datatypes.registry DEBUG 2024-02-23 12:54:49,701 [pN:main,p:69576,tN:MainThread] Retrieved datatype module galaxy.datatypes.plant_tribes:Smat from the datatype registry for extension smat. galaxy.datatypes.registry DEBUG 2024-02-23 12:54:49,701 [pN:main,p:69576,tN:MainThread] Retrieved datatype module galaxy.datatypes.genetics:GenotypeMatrix from the datatype registry for extension alohomora_gts. galaxy.datatypes.registry DEBUG 2024-02-23 12:54:49,701 [pN:main,p:69576,tN:MainThread] Retrieved datatype module galaxy.datatypes.tabular:Tabular from the datatype registry for extension alohomora_map. galaxy.datatypes.registry DEBUG 2024-02-23 12:54:49,701 [pN:main,p:69576,tN:MainThread] Retrieved datatype module galaxy.datatypes.tabular:Tabular from the datatype registry for extension alohomora_maf. galaxy.datatypes.registry DEBUG 2024-02-23 12:54:49,702 [pN:main,p:69576,tN:MainThread] Retrieved datatype module galaxy.datatypes.tabular:Tabular from the datatype registry for extension alohomora_ped. galaxy.datatypes.registry DEBUG 2024-02-23 12:54:49,702 [pN:main,p:69576,tN:MainThread] Retrieved datatype module galaxy.datatypes.tabular:Tabular from the datatype registry for extension linkage_pedin. galaxy.datatypes.registry DEBUG 2024-02-23 12:54:49,702 [pN:main,p:69576,tN:MainThread] Retrieved datatype module galaxy.datatypes.genetics:DataIn from the datatype registry for extension linkage_datain. galaxy.datatypes.registry DEBUG 2024-02-23 12:54:49,702 [pN:main,p:69576,tN:MainThread] Retrieved datatype module galaxy.datatypes.genetics:MarkerMap from the datatype registry for extension linkage_map. galaxy.datatypes.registry DEBUG 2024-02-23 12:54:49,702 [pN:main,p:69576,tN:MainThread] Retrieved datatype module galaxy.datatypes.tabular:Tabular from the datatype registry for extension allegro_ihaplo. galaxy.datatypes.registry DEBUG 2024-02-23 12:54:49,702 [pN:main,p:69576,tN:MainThread] Retrieved datatype module galaxy.datatypes.tabular:Tabular from the datatype registry for extension allegro_descent. galaxy.datatypes.registry DEBUG 2024-02-23 12:54:49,702 [pN:main,p:69576,tN:MainThread] Retrieved datatype module galaxy.datatypes.genetics:AllegroLOD from the datatype registry for extension allegro_fparam. galaxy.datatypes.registry DEBUG 2024-02-23 12:54:49,702 [pN:main,p:69576,tN:MainThread] Retrieved datatype module galaxy.datatypes.genetics:IdeasPre from the datatype registry for extension ideaspre. galaxy.datatypes.registry DEBUG 2024-02-23 12:54:49,702 [pN:main,p:69576,tN:MainThread] Retrieved datatype module galaxy.datatypes.xml:Sbml from the datatype registry for extension sbml. galaxy.datatypes.registry DEBUG 2024-02-23 12:54:49,704 [pN:main,p:69576,tN:MainThread] Retrieved datatype module galaxy.datatypes.spaln:SpalnNuclDb from the datatype registry for extension spalndbnp. galaxy.datatypes.registry DEBUG 2024-02-23 12:54:49,704 [pN:main,p:69576,tN:MainThread] Retrieved datatype module galaxy.datatypes.spaln:SpalnProtDb from the datatype registry for extension spalndba. galaxy.datatypes.registry DEBUG 2024-02-23 12:54:49,704 [pN:main,p:69576,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:RDS from the datatype registry for extension dada2_dada. galaxy.datatypes.registry DEBUG 2024-02-23 12:54:49,704 [pN:main,p:69576,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:RDS from the datatype registry for extension dada2_errorrates. galaxy.datatypes.registry DEBUG 2024-02-23 12:54:49,705 [pN:main,p:69576,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:RDS from the datatype registry for extension dada2_mergepairs. galaxy.datatypes.registry DEBUG 2024-02-23 12:54:49,705 [pN:main,p:69576,tN:MainThread] Retrieved datatype module galaxy.datatypes.tabular:Tabular from the datatype registry for extension dada2_sequencetable. galaxy.datatypes.registry DEBUG 2024-02-23 12:54:49,705 [pN:main,p:69576,tN:MainThread] Retrieved datatype module galaxy.datatypes.tabular:Tabular from the datatype registry for extension dada2_uniques. galaxy.datatypes.registry DEBUG 2024-02-23 12:54:49,705 [pN:main,p:69576,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:RDS from the datatype registry for extension ampvis2. galaxy.datatypes.registry DEBUG 2024-02-23 12:54:49,705 [pN:main,p:69576,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:Binary from the datatype registry for extension ckpt. galaxy.datatypes.registry DEBUG 2024-02-23 12:54:49,705 [pN:main,p:69576,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:Binary from the datatype registry for extension tgz. galaxy.datatypes.registry DEBUG 2024-02-23 12:54:49,708 [pN:main,p:69576,tN:MainThread] Retrieved datatype module galaxy.datatypes.media:Wav from the datatype registry for extension wav. galaxy.datatypes.registry DEBUG 2024-02-23 12:54:49,708 [pN:main,p:69576,tN:MainThread] Retrieved datatype module galaxy.datatypes.media:Mp3 from the datatype registry for extension mp3. galaxy.datatypes.registry DEBUG 2024-02-23 12:54:49,708 [pN:main,p:69576,tN:MainThread] Retrieved datatype module galaxy.datatypes.media:Mkv from the datatype registry for extension mkv. galaxy.datatypes.registry DEBUG 2024-02-23 12:54:49,708 [pN:main,p:69576,tN:MainThread] Retrieved datatype module galaxy.datatypes.media:Mp4 from the datatype registry for extension mp4. galaxy.datatypes.registry DEBUG 2024-02-23 12:54:49,708 [pN:main,p:69576,tN:MainThread] Retrieved datatype module galaxy.datatypes.media:Flv from the datatype registry for extension flv. galaxy.datatypes.registry DEBUG 2024-02-23 12:54:49,708 [pN:main,p:69576,tN:MainThread] Retrieved datatype module galaxy.datatypes.media:Mpg from the datatype registry for extension mpg. galaxy.datatypes.registry DEBUG 2024-02-23 12:54:49,709 [pN:main,p:69576,tN:MainThread] Retrieved datatype module galaxy.datatypes.speech:TextGrid from the datatype registry for extension textgrid. galaxy.datatypes.registry DEBUG 2024-02-23 12:54:49,709 [pN:main,p:69576,tN:MainThread] Retrieved datatype module galaxy.datatypes.speech:BPF from the datatype registry for extension par. galaxy.datatypes.registry DEBUG 2024-02-23 12:54:49,709 [pN:main,p:69576,tN:MainThread] Retrieved datatype module galaxy.datatypes.tabular:Tabular from the datatype registry for extension ffindex. galaxy.datatypes.registry DEBUG 2024-02-23 12:54:49,709 [pN:main,p:69576,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:Data from the datatype registry for extension ffdata. galaxy.datatypes.registry DEBUG 2024-02-23 12:54:49,709 [pN:main,p:69576,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:Pretext from the datatype registry for extension pretext. galaxy.datatypes.registry DEBUG 2024-02-23 12:54:49,709 [pN:main,p:69576,tN:MainThread] Retrieved datatype module galaxy.datatypes.text:Html from the datatype registry for extension immuneml_receptors.html. galaxy.datatypes.registry DEBUG 2024-02-23 12:54:49,709 [pN:main,p:69576,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:HexrdMaterials from the datatype registry for extension hexrd.materials.h5. galaxy.datatypes.registry DEBUG 2024-02-23 12:54:49,709 [pN:main,p:69576,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:Npz from the datatype registry for extension npz. galaxy.datatypes.registry DEBUG 2024-02-23 12:54:49,710 [pN:main,p:69576,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:HexrdImagesNpz from the datatype registry for extension hexrd.images.npz. galaxy.datatypes.registry DEBUG 2024-02-23 12:54:49,710 [pN:main,p:69576,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:HexrdEtaOmeNpz from the datatype registry for extension hexrd.eta_ome.npz. galaxy.datatypes.registry DEBUG 2024-02-23 12:54:49,710 [pN:main,p:69576,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:Npz from the datatype registry for extension hexrd.scored_orientations.npz. galaxy.datatypes.registry DEBUG 2024-02-23 12:54:49,710 [pN:main,p:69576,tN:MainThread] Retrieved datatype module galaxy.datatypes.tabular:Tabular from the datatype registry for extension hexrd.accepted_orientations. galaxy.datatypes.registry DEBUG 2024-02-23 12:54:49,710 [pN:main,p:69576,tN:MainThread] Retrieved datatype module galaxy.datatypes.text:Yaml from the datatype registry for extension hexrd.yml. galaxy.datatypes.registry DEBUG 2024-02-23 12:54:49,710 [pN:main,p:69576,tN:MainThread] Retrieved datatype module galaxy.datatypes.constructive_solid_geometry:NeperTess from the datatype registry for extension neper.tess. galaxy.datatypes.registry DEBUG 2024-02-23 12:54:49,710 [pN:main,p:69576,tN:MainThread] Retrieved datatype module galaxy.datatypes.constructive_solid_geometry:NeperTesr from the datatype registry for extension neper.tesr. galaxy.datatypes.registry DEBUG 2024-02-23 12:54:49,710 [pN:main,p:69576,tN:MainThread] Retrieved datatype module galaxy.datatypes.constructive_solid_geometry:NeperPoints from the datatype registry for extension neper.points. galaxy.datatypes.registry DEBUG 2024-02-23 12:54:49,710 [pN:main,p:69576,tN:MainThread] Retrieved datatype module galaxy.datatypes.constructive_solid_geometry:NeperPointsTabular from the datatype registry for extension neper.points.tsv. galaxy.datatypes.registry DEBUG 2024-02-23 12:54:49,711 [pN:main,p:69576,tN:MainThread] Retrieved datatype module galaxy.datatypes.constructive_solid_geometry:NeperMultiScaleCell from the datatype registry for extension neper.mscell. galaxy.datatypes.registry DEBUG 2024-02-23 12:54:49,711 [pN:main,p:69576,tN:MainThread] Retrieved datatype module galaxy.datatypes.constructive_solid_geometry:GmshMsh from the datatype registry for extension gmsh.msh. galaxy.datatypes.registry DEBUG 2024-02-23 12:54:49,711 [pN:main,p:69576,tN:MainThread] Retrieved datatype module galaxy.datatypes.constructive_solid_geometry:GmshGeo from the datatype registry for extension gmsh.geo. galaxy.datatypes.registry DEBUG 2024-02-23 12:54:49,711 [pN:main,p:69576,tN:MainThread] Retrieved datatype module galaxy.datatypes.constructive_solid_geometry:ZsetGeof from the datatype registry for extension zset.geof. galaxy.datatypes.registry DEBUG 2024-02-23 12:54:49,711 [pN:main,p:69576,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:Binary from the datatype registry for extension stl. galaxy.datatypes.registry DEBUG 2024-02-23 12:54:49,711 [pN:main,p:69576,tN:MainThread] Overriding conflicting datatype with extension 'stl', using datatype from /scratch/rico/galaxy/lib/galaxy/config/sample/datatypes_conf.xml.sample. galaxy.datatypes.registry DEBUG 2024-02-23 12:54:49,711 [pN:main,p:69576,tN:MainThread] Retrieved datatype module galaxy.datatypes.text:Text from the datatype registry for extension pov. galaxy.datatypes.registry DEBUG 2024-02-23 12:54:49,711 [pN:main,p:69576,tN:MainThread] Retrieved datatype module galaxy.datatypes.text:PithyaResult from the datatype registry for extension pithya.result. galaxy.datatypes.registry DEBUG 2024-02-23 12:54:49,711 [pN:main,p:69576,tN:MainThread] Retrieved datatype module galaxy.datatypes.text:PithyaProperty from the datatype registry for extension pithya.property. galaxy.datatypes.registry DEBUG 2024-02-23 12:54:49,711 [pN:main,p:69576,tN:MainThread] Retrieved datatype module galaxy.datatypes.text:PithyaModel from the datatype registry for extension pithya.model. galaxy.datatypes.registry DEBUG 2024-02-23 12:54:49,712 [pN:main,p:69576,tN:MainThread] Retrieved datatype module galaxy.datatypes.text:BCSLts from the datatype registry for extension bcsl.ts. galaxy.datatypes.registry DEBUG 2024-02-23 12:54:49,712 [pN:main,p:69576,tN:MainThread] Retrieved datatype module galaxy.datatypes.text:BCSLmodel from the datatype registry for extension bcsl.model. galaxy.datatypes.registry DEBUG 2024-02-23 12:54:49,712 [pN:main,p:69576,tN:MainThread] Retrieved datatype module galaxy.datatypes.text:StormSample from the datatype registry for extension storm.sample. galaxy.datatypes.registry DEBUG 2024-02-23 12:54:49,712 [pN:main,p:69576,tN:MainThread] Retrieved datatype module galaxy.datatypes.text:StormCheck from the datatype registry for extension storm.check. galaxy.datatypes.registry DEBUG 2024-02-23 12:54:49,712 [pN:main,p:69576,tN:MainThread] Retrieved datatype module galaxy.datatypes.text:CTLresult from the datatype registry for extension ctl.result. galaxy.datatypes.registry DEBUG 2024-02-23 12:54:49,712 [pN:main,p:69576,tN:MainThread] Retrieved datatype module galaxy.datatypes.text:Castep from the datatype registry for extension castep. galaxy.datatypes.registry DEBUG 2024-02-23 12:54:49,712 [pN:main,p:69576,tN:MainThread] Retrieved datatype module galaxy.datatypes.text:Param from the datatype registry for extension param. galaxy.datatypes.registry DEBUG 2024-02-23 12:54:49,712 [pN:main,p:69576,tN:MainThread] Retrieved datatype module galaxy.datatypes.text:FormattedDensity from the datatype registry for extension den_fmt. galaxy.datatypes.registry DEBUG 2024-02-23 12:54:49,713 [pN:main,p:69576,tN:MainThread] Retrieved datatype module galaxy.datatypes.larch:AthenaProject from the datatype registry for extension prj. galaxy.datatypes.registry DEBUG 2024-02-23 12:54:49,713 [pN:main,p:69576,tN:MainThread] Retrieved datatype module galaxy.datatypes.larch:FEFFInput from the datatype registry for extension inp. galaxy.datatypes.registry DEBUG 2024-02-23 12:54:49,713 [pN:main,p:69576,tN:MainThread] Retrieved datatype module galaxy.datatypes.tabular:CSV from the datatype registry for extension sp. galaxy.datatypes.registry DEBUG 2024-02-23 12:54:49,713 [pN:main,p:69576,tN:MainThread] Retrieved datatype module galaxy.datatypes.tabular:CSV from the datatype registry for extension gds. galaxy.datatypes.registry DEBUG 2024-02-23 12:54:49,713 [pN:main,p:69576,tN:MainThread] Retrieved datatype module galaxy.datatypes.tabular:CSV from the datatype registry for extension feff. galaxy.datatypes.registry DEBUG 2024-02-23 12:54:49,713 [pN:main,p:69576,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension feffit. galaxy.datatypes.registry DEBUG 2024-02-23 12:54:49,714 [pN:main,p:69576,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:Binary from the datatype registry for extension bil. galaxy.datatypes.registry DEBUG 2024-02-23 12:54:49,714 [pN:main,p:69576,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension hdr. galaxy.datatypes.registry DEBUG 2024-02-23 12:54:49,714 [pN:main,p:69576,tN:MainThread] Retrieved datatype module galaxy.datatypes.gis:Shapefile from the datatype registry for extension shp. galaxy.datatypes.registry DEBUG 2024-02-23 12:54:49,714 [pN:main,p:69576,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:FITS from the datatype registry for extension fits. galaxy.datatypes.registry DEBUG 2024-02-23 12:54:49,715 [pN:main,p:69576,tN:MainThread] Retrieved datatype module galaxy.datatypes.chain:Chain from the datatype registry for extension chain. galaxy.datatypes.registry DEBUG 2024-02-23 12:54:49,715 [pN:main,p:69576,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.plant_tribes:PlantTribesKsComponents' galaxy.datatypes.registry DEBUG 2024-02-23 12:54:49,715 [pN:main,p:69576,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.plant_tribes:Smat' galaxy.datatypes.registry DEBUG 2024-02-23 12:54:49,715 [pN:main,p:69576,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.mothur:Sabund' galaxy.datatypes.registry DEBUG 2024-02-23 12:54:49,715 [pN:main,p:69576,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.mothur:Otu' galaxy.datatypes.registry DEBUG 2024-02-23 12:54:49,715 [pN:main,p:69576,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.mothur:GroupAbund' galaxy.datatypes.registry DEBUG 2024-02-23 12:54:49,715 [pN:main,p:69576,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.mothur:SecondaryStructureMap' galaxy.datatypes.registry DEBUG 2024-02-23 12:54:49,715 [pN:main,p:69576,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.mothur:LowerTriangleDistanceMatrix' galaxy.datatypes.registry DEBUG 2024-02-23 12:54:49,715 [pN:main,p:69576,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.mothur:SquareDistanceMatrix' galaxy.datatypes.registry DEBUG 2024-02-23 12:54:49,715 [pN:main,p:69576,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.mothur:PairwiseDistanceMatrix' galaxy.datatypes.registry DEBUG 2024-02-23 12:54:49,716 [pN:main,p:69576,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.mothur:Oligos' galaxy.datatypes.registry DEBUG 2024-02-23 12:54:49,716 [pN:main,p:69576,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.mothur:Quantile' galaxy.datatypes.registry DEBUG 2024-02-23 12:54:49,716 [pN:main,p:69576,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.mothur:Frequency' galaxy.datatypes.registry DEBUG 2024-02-23 12:54:49,716 [pN:main,p:69576,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.mothur:LaneMask' galaxy.datatypes.registry DEBUG 2024-02-23 12:54:49,716 [pN:main,p:69576,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.mothur:RefTaxonomy' galaxy.datatypes.registry DEBUG 2024-02-23 12:54:49,716 [pN:main,p:69576,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.mothur:Axes' galaxy.datatypes.registry DEBUG 2024-02-23 12:54:49,716 [pN:main,p:69576,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.constructive_solid_geometry:PlyAscii' galaxy.datatypes.registry DEBUG 2024-02-23 12:54:49,716 [pN:main,p:69576,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.constructive_solid_geometry:PlyBinary' galaxy.datatypes.registry DEBUG 2024-02-23 12:54:49,716 [pN:main,p:69576,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.constructive_solid_geometry:VtkAscii' galaxy.datatypes.registry DEBUG 2024-02-23 12:54:49,716 [pN:main,p:69576,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.constructive_solid_geometry:VtkBinary' galaxy.datatypes.registry DEBUG 2024-02-23 12:54:49,716 [pN:main,p:69576,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.constructive_solid_geometry:NeperTess' galaxy.datatypes.registry DEBUG 2024-02-23 12:54:49,716 [pN:main,p:69576,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.constructive_solid_geometry:NeperTesr' galaxy.datatypes.registry DEBUG 2024-02-23 12:54:49,716 [pN:main,p:69576,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.constructive_solid_geometry:GmshMsh' galaxy.datatypes.registry DEBUG 2024-02-23 12:54:49,716 [pN:main,p:69576,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.goldenpath:GoldenPath' galaxy.datatypes.registry DEBUG 2024-02-23 12:54:49,716 [pN:main,p:69576,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.interval:ScIdx' galaxy.datatypes.registry DEBUG 2024-02-23 12:54:49,716 [pN:main,p:69576,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.tabular:Vcf' galaxy.datatypes.registry DEBUG 2024-02-23 12:54:49,716 [pN:main,p:69576,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.binary:JP2' galaxy.datatypes.registry DEBUG 2024-02-23 12:54:49,716 [pN:main,p:69576,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.binary:TwoBit' galaxy.datatypes.registry DEBUG 2024-02-23 12:54:49,717 [pN:main,p:69576,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.binary:GeminiSQLite' galaxy.datatypes.registry DEBUG 2024-02-23 12:54:49,717 [pN:main,p:69576,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.binary:SQmass' galaxy.datatypes.registry DEBUG 2024-02-23 12:54:49,717 [pN:main,p:69576,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.binary:MzSQlite' galaxy.datatypes.registry DEBUG 2024-02-23 12:54:49,717 [pN:main,p:69576,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.binary:OSW' galaxy.datatypes.registry DEBUG 2024-02-23 12:54:49,717 [pN:main,p:69576,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.binary:PQP' galaxy.datatypes.registry DEBUG 2024-02-23 12:54:49,717 [pN:main,p:69576,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.binary:IdpDB' galaxy.datatypes.registry DEBUG 2024-02-23 12:54:49,717 [pN:main,p:69576,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.binary:ElibSQlite' galaxy.datatypes.registry DEBUG 2024-02-23 12:54:49,717 [pN:main,p:69576,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.binary:DlibSQlite' galaxy.datatypes.registry DEBUG 2024-02-23 12:54:49,717 [pN:main,p:69576,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.binary:BlibSQlite' galaxy.datatypes.registry DEBUG 2024-02-23 12:54:49,717 [pN:main,p:69576,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.binary:ChiraSQLite' galaxy.datatypes.registry DEBUG 2024-02-23 12:54:49,717 [pN:main,p:69576,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.binary:CuffDiffSQlite' galaxy.datatypes.registry DEBUG 2024-02-23 12:54:49,720 [pN:main,p:69576,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.binary:GAFASQLite' galaxy.datatypes.registry DEBUG 2024-02-23 12:54:49,720 [pN:main,p:69576,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.binary:NcbiTaxonomySQlite' galaxy.datatypes.registry DEBUG 2024-02-23 12:54:49,720 [pN:main,p:69576,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.binary:SQlite' galaxy.datatypes.registry DEBUG 2024-02-23 12:54:49,720 [pN:main,p:69576,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.binary:H5MLM' galaxy.datatypes.registry DEBUG 2024-02-23 12:54:49,721 [pN:main,p:69576,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.binary:Cool' galaxy.datatypes.registry DEBUG 2024-02-23 12:54:49,721 [pN:main,p:69576,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.binary:MCool' galaxy.datatypes.registry DEBUG 2024-02-23 12:54:49,721 [pN:main,p:69576,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.binary:Loom' galaxy.datatypes.registry DEBUG 2024-02-23 12:54:49,721 [pN:main,p:69576,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.binary:Anndata' galaxy.datatypes.registry DEBUG 2024-02-23 12:54:49,721 [pN:main,p:69576,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.binary:Biom2' galaxy.datatypes.registry DEBUG 2024-02-23 12:54:49,721 [pN:main,p:69576,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.binary:HexrdMaterials' galaxy.datatypes.registry DEBUG 2024-02-23 12:54:49,721 [pN:main,p:69576,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.binary:H5' galaxy.datatypes.registry DEBUG 2024-02-23 12:54:49,721 [pN:main,p:69576,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.binary:Grib' galaxy.datatypes.registry DEBUG 2024-02-23 12:54:49,721 [pN:main,p:69576,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.binary:HexrdImagesNpz' galaxy.datatypes.registry DEBUG 2024-02-23 12:54:49,721 [pN:main,p:69576,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.binary:HexrdEtaOmeNpz' galaxy.datatypes.registry DEBUG 2024-02-23 12:54:49,721 [pN:main,p:69576,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.binary:Npz' galaxy.datatypes.registry DEBUG 2024-02-23 12:54:49,721 [pN:main,p:69576,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.binary:Bam' galaxy.datatypes.registry DEBUG 2024-02-23 12:54:49,721 [pN:main,p:69576,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.binary:BamQuerynameSorted' galaxy.datatypes.registry DEBUG 2024-02-23 12:54:49,721 [pN:main,p:69576,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.binary:BamNative' galaxy.datatypes.registry DEBUG 2024-02-23 12:54:49,722 [pN:main,p:69576,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.binary:CRAM' galaxy.datatypes.registry DEBUG 2024-02-23 12:54:49,722 [pN:main,p:69576,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.binary:Sff' galaxy.datatypes.registry DEBUG 2024-02-23 12:54:49,722 [pN:main,p:69576,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.binary:Sra' galaxy.datatypes.registry DEBUG 2024-02-23 12:54:49,722 [pN:main,p:69576,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.binary:NetCDF' galaxy.datatypes.registry DEBUG 2024-02-23 12:54:49,722 [pN:main,p:69576,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.binary:DAA' galaxy.datatypes.registry DEBUG 2024-02-23 12:54:49,722 [pN:main,p:69576,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.binary:RMA6' galaxy.datatypes.registry DEBUG 2024-02-23 12:54:49,722 [pN:main,p:69576,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.binary:DMND' galaxy.datatypes.registry DEBUG 2024-02-23 12:54:49,722 [pN:main,p:69576,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.binary:Parquet' galaxy.datatypes.registry DEBUG 2024-02-23 12:54:49,722 [pN:main,p:69576,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.binary:BafTar' galaxy.datatypes.registry DEBUG 2024-02-23 12:54:49,722 [pN:main,p:69576,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.binary:TdfTar' galaxy.datatypes.registry DEBUG 2024-02-23 12:54:49,722 [pN:main,p:69576,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.binary:MassHunterTar' galaxy.datatypes.registry DEBUG 2024-02-23 12:54:49,722 [pN:main,p:69576,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.binary:MassLynxTar' galaxy.datatypes.registry DEBUG 2024-02-23 12:54:49,722 [pN:main,p:69576,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.binary:YepTar' galaxy.datatypes.registry DEBUG 2024-02-23 12:54:49,722 [pN:main,p:69576,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.binary:WiffTar' galaxy.datatypes.registry DEBUG 2024-02-23 12:54:49,722 [pN:main,p:69576,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.binary:Fast5ArchiveGz' galaxy.datatypes.registry DEBUG 2024-02-23 12:54:49,722 [pN:main,p:69576,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.binary:Fast5ArchiveBz2' galaxy.datatypes.registry DEBUG 2024-02-23 12:54:49,723 [pN:main,p:69576,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.binary:Fast5Archive' galaxy.datatypes.registry DEBUG 2024-02-23 12:54:49,723 [pN:main,p:69576,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.binary:Meryldb' galaxy.datatypes.registry DEBUG 2024-02-23 12:54:49,723 [pN:main,p:69576,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.binary:Bref3' galaxy.datatypes.registry DEBUG 2024-02-23 12:54:49,723 [pN:main,p:69576,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.binary:PostgresqlArchive' galaxy.datatypes.registry DEBUG 2024-02-23 12:54:49,723 [pN:main,p:69576,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.binary:ICM' galaxy.datatypes.registry DEBUG 2024-02-23 12:54:49,723 [pN:main,p:69576,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.binary:Idat' galaxy.datatypes.registry DEBUG 2024-02-23 12:54:49,723 [pN:main,p:69576,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.binary:Trr' galaxy.datatypes.registry DEBUG 2024-02-23 12:54:49,723 [pN:main,p:69576,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.binary:Dcd' galaxy.datatypes.registry DEBUG 2024-02-23 12:54:49,723 [pN:main,p:69576,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.binary:Xtc' galaxy.datatypes.registry DEBUG 2024-02-23 12:54:49,723 [pN:main,p:69576,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.binary:Cpt' galaxy.datatypes.registry DEBUG 2024-02-23 12:54:49,723 [pN:main,p:69576,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.binary:Edr' galaxy.datatypes.registry DEBUG 2024-02-23 12:54:49,723 [pN:main,p:69576,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.binary:Vel' galaxy.datatypes.registry DEBUG 2024-02-23 12:54:49,723 [pN:main,p:69576,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.binary:Xlsx' galaxy.datatypes.registry DEBUG 2024-02-23 12:54:49,723 [pN:main,p:69576,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.qiime2:QIIME2Metadata' galaxy.datatypes.registry DEBUG 2024-02-23 12:54:49,723 [pN:main,p:69576,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.qiime2:QIIME2Artifact' galaxy.datatypes.registry DEBUG 2024-02-23 12:54:49,724 [pN:main,p:69576,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.qiime2:QIIME2Visualization' galaxy.datatypes.registry DEBUG 2024-02-23 12:54:49,724 [pN:main,p:69576,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.binary:CompressedZipArchive' galaxy.datatypes.registry DEBUG 2024-02-23 12:54:49,724 [pN:main,p:69576,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.binary:Pretext' galaxy.datatypes.registry DEBUG 2024-02-23 12:54:49,724 [pN:main,p:69576,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.annotation:Augustus' galaxy.datatypes.registry DEBUG 2024-02-23 12:54:49,724 [pN:main,p:69576,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.xml:Owl' galaxy.datatypes.registry DEBUG 2024-02-23 12:54:49,724 [pN:main,p:69576,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.chain:Chain' galaxy.datatypes.registry DEBUG 2024-02-23 12:54:49,724 [pN:main,p:69576,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.triples:Rdf' galaxy.datatypes.registry DEBUG 2024-02-23 12:54:49,724 [pN:main,p:69576,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.blast:BlastXml' galaxy.datatypes.registry DEBUG 2024-02-23 12:54:49,724 [pN:main,p:69576,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.images:Gifti' galaxy.datatypes.registry DEBUG 2024-02-23 12:54:49,724 [pN:main,p:69576,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.xml:Phyloxml' galaxy.datatypes.registry DEBUG 2024-02-23 12:54:49,724 [pN:main,p:69576,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.xml:Dzi' galaxy.datatypes.registry DEBUG 2024-02-23 12:54:49,724 [pN:main,p:69576,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.xml:Sbml' galaxy.datatypes.registry DEBUG 2024-02-23 12:54:49,724 [pN:main,p:69576,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.proteomics:Dta2d' galaxy.datatypes.registry DEBUG 2024-02-23 12:54:49,724 [pN:main,p:69576,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.proteomics:Edta' galaxy.datatypes.registry DEBUG 2024-02-23 12:54:49,724 [pN:main,p:69576,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.proteomics:ConsensusXML' galaxy.datatypes.registry DEBUG 2024-02-23 12:54:49,725 [pN:main,p:69576,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.proteomics:IdXML' galaxy.datatypes.registry DEBUG 2024-02-23 12:54:49,725 [pN:main,p:69576,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.proteomics:FeatureXML' galaxy.datatypes.registry DEBUG 2024-02-23 12:54:49,725 [pN:main,p:69576,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.proteomics:MascotXML' galaxy.datatypes.registry DEBUG 2024-02-23 12:54:49,725 [pN:main,p:69576,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.proteomics:Mgf' galaxy.datatypes.registry DEBUG 2024-02-23 12:54:49,725 [pN:main,p:69576,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.proteomics:Ms2' galaxy.datatypes.registry DEBUG 2024-02-23 12:54:49,725 [pN:main,p:69576,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.proteomics:Msp' galaxy.datatypes.registry DEBUG 2024-02-23 12:54:49,725 [pN:main,p:69576,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.proteomics:MzData' galaxy.datatypes.registry DEBUG 2024-02-23 12:54:49,725 [pN:main,p:69576,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.proteomics:MzIdentML' galaxy.datatypes.registry DEBUG 2024-02-23 12:54:49,725 [pN:main,p:69576,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.proteomics:MzML' galaxy.datatypes.registry DEBUG 2024-02-23 12:54:49,725 [pN:main,p:69576,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.proteomics:MzQuantML' galaxy.datatypes.registry DEBUG 2024-02-23 12:54:49,725 [pN:main,p:69576,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.proteomics:MzTab' galaxy.datatypes.registry DEBUG 2024-02-23 12:54:49,725 [pN:main,p:69576,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.proteomics:MzTab2' galaxy.datatypes.registry DEBUG 2024-02-23 12:54:49,725 [pN:main,p:69576,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.proteomics:ParamXml' galaxy.datatypes.registry DEBUG 2024-02-23 12:54:49,725 [pN:main,p:69576,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.proteomics:MzXML' galaxy.datatypes.registry DEBUG 2024-02-23 12:54:49,725 [pN:main,p:69576,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.proteomics:NmrML' galaxy.datatypes.registry DEBUG 2024-02-23 12:54:49,726 [pN:main,p:69576,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.proteomics:Kroenik' galaxy.datatypes.registry DEBUG 2024-02-23 12:54:49,726 [pN:main,p:69576,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.proteomics:PepList' galaxy.datatypes.registry DEBUG 2024-02-23 12:54:49,726 [pN:main,p:69576,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.proteomics:PSMS' galaxy.datatypes.registry DEBUG 2024-02-23 12:54:49,726 [pN:main,p:69576,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.proteomics:PepXml' galaxy.datatypes.registry DEBUG 2024-02-23 12:54:49,726 [pN:main,p:69576,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.proteomics:ProtXML' galaxy.datatypes.registry DEBUG 2024-02-23 12:54:49,726 [pN:main,p:69576,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.proteomics:SPLib' galaxy.datatypes.registry DEBUG 2024-02-23 12:54:49,726 [pN:main,p:69576,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.proteomics:TandemXML' galaxy.datatypes.registry DEBUG 2024-02-23 12:54:49,726 [pN:main,p:69576,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.proteomics:ThermoRAW' galaxy.datatypes.registry DEBUG 2024-02-23 12:54:49,726 [pN:main,p:69576,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.proteomics:TraML' galaxy.datatypes.registry DEBUG 2024-02-23 12:54:49,726 [pN:main,p:69576,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.proteomics:TrafoXML' galaxy.datatypes.registry DEBUG 2024-02-23 12:54:49,726 [pN:main,p:69576,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.proteomics:UniProtXML' galaxy.datatypes.registry DEBUG 2024-02-23 12:54:49,726 [pN:main,p:69576,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.proteomics:XquestXML' galaxy.datatypes.registry DEBUG 2024-02-23 12:54:49,726 [pN:main,p:69576,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.proteomics:XquestSpecXML' galaxy.datatypes.registry DEBUG 2024-02-23 12:54:49,726 [pN:main,p:69576,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.proteomics:QCML' galaxy.datatypes.registry DEBUG 2024-02-23 12:54:49,727 [pN:main,p:69576,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.proteomics:Wiff' galaxy.datatypes.registry DEBUG 2024-02-23 12:54:49,727 [pN:main,p:69576,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.proteomics:PEFF' galaxy.datatypes.registry DEBUG 2024-02-23 12:54:49,727 [pN:main,p:69576,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.molecules:CML' galaxy.datatypes.registry DEBUG 2024-02-23 12:54:49,727 [pN:main,p:69576,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.xml:GenericXml' galaxy.datatypes.registry DEBUG 2024-02-23 12:54:49,727 [pN:main,p:69576,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.triples:HDT' galaxy.datatypes.registry DEBUG 2024-02-23 12:54:49,727 [pN:main,p:69576,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.triples:Turtle' galaxy.datatypes.registry DEBUG 2024-02-23 12:54:49,727 [pN:main,p:69576,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.triples:NTriples' galaxy.datatypes.registry DEBUG 2024-02-23 12:54:49,727 [pN:main,p:69576,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.triples:Jsonld' galaxy.datatypes.registry DEBUG 2024-02-23 12:54:49,727 [pN:main,p:69576,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.sequence:Maf' galaxy.datatypes.registry DEBUG 2024-02-23 12:54:49,727 [pN:main,p:69576,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.sequence:Lav' galaxy.datatypes.registry DEBUG 2024-02-23 12:54:49,727 [pN:main,p:69576,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.sequence:MemePsp' galaxy.datatypes.registry DEBUG 2024-02-23 12:54:49,727 [pN:main,p:69576,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.sequence:Fastg' galaxy.datatypes.registry DEBUG 2024-02-23 12:54:49,727 [pN:main,p:69576,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.sequence:csFasta' galaxy.datatypes.registry DEBUG 2024-02-23 12:54:49,728 [pN:main,p:69576,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.qualityscore:QualityScoreSOLiD' galaxy.datatypes.registry DEBUG 2024-02-23 12:54:49,728 [pN:main,p:69576,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.qualityscore:QualityScore454' galaxy.datatypes.registry DEBUG 2024-02-23 12:54:49,728 [pN:main,p:69576,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.molecules:SDF' galaxy.datatypes.registry DEBUG 2024-02-23 12:54:49,728 [pN:main,p:69576,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.molecules:PDB' galaxy.datatypes.registry DEBUG 2024-02-23 12:54:49,728 [pN:main,p:69576,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.molecules:Cell' galaxy.datatypes.registry DEBUG 2024-02-23 12:54:49,728 [pN:main,p:69576,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.molecules:CIF' galaxy.datatypes.registry DEBUG 2024-02-23 12:54:49,728 [pN:main,p:69576,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.molecules:ExtendedXYZ' galaxy.datatypes.registry DEBUG 2024-02-23 12:54:49,728 [pN:main,p:69576,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.molecules:XYZ' galaxy.datatypes.registry DEBUG 2024-02-23 12:54:49,728 [pN:main,p:69576,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.molecules:MOL2' galaxy.datatypes.registry DEBUG 2024-02-23 12:54:49,728 [pN:main,p:69576,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.molecules:InChI' galaxy.datatypes.registry DEBUG 2024-02-23 12:54:49,728 [pN:main,p:69576,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.molecules:FPS' galaxy.datatypes.registry DEBUG 2024-02-23 12:54:49,728 [pN:main,p:69576,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.molecules:PQR' galaxy.datatypes.registry DEBUG 2024-02-23 12:54:49,728 [pN:main,p:69576,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.molecules:GRO' galaxy.datatypes.registry DEBUG 2024-02-23 12:54:49,728 [pN:main,p:69576,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.phylip:Phylip' galaxy.datatypes.registry DEBUG 2024-02-23 12:54:49,729 [pN:main,p:69576,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.sequence:Fasta' galaxy.datatypes.registry DEBUG 2024-02-23 12:54:49,729 [pN:main,p:69576,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.sequence:FastqCSSanger' galaxy.datatypes.registry DEBUG 2024-02-23 12:54:49,729 [pN:main,p:69576,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.sequence:FastqSanger' galaxy.datatypes.registry DEBUG 2024-02-23 12:54:49,729 [pN:main,p:69576,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.sequence:Fastq' galaxy.datatypes.registry DEBUG 2024-02-23 12:54:49,729 [pN:main,p:69576,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.interval:Wiggle' galaxy.datatypes.registry DEBUG 2024-02-23 12:54:49,729 [pN:main,p:69576,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.text:Html' galaxy.datatypes.registry DEBUG 2024-02-23 12:54:49,729 [pN:main,p:69576,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.images:Pdf' galaxy.datatypes.registry DEBUG 2024-02-23 12:54:49,729 [pN:main,p:69576,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.sequence:Axt' galaxy.datatypes.registry DEBUG 2024-02-23 12:54:49,729 [pN:main,p:69576,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.sequence:Genbank' galaxy.datatypes.registry DEBUG 2024-02-23 12:54:49,729 [pN:main,p:69576,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.interval:Bed' galaxy.datatypes.registry DEBUG 2024-02-23 12:54:49,729 [pN:main,p:69576,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.interval:CustomTrack' galaxy.datatypes.registry DEBUG 2024-02-23 12:54:49,729 [pN:main,p:69576,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.interval:Gtf' galaxy.datatypes.registry DEBUG 2024-02-23 12:54:49,730 [pN:main,p:69576,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.interval:Gff' galaxy.datatypes.registry DEBUG 2024-02-23 12:54:49,730 [pN:main,p:69576,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.interval:Gff3' galaxy.datatypes.registry DEBUG 2024-02-23 12:54:49,730 [pN:main,p:69576,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.tabular:Pileup' galaxy.datatypes.registry DEBUG 2024-02-23 12:54:49,730 [pN:main,p:69576,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.tabular:Psl' galaxy.datatypes.registry DEBUG 2024-02-23 12:54:49,730 [pN:main,p:69576,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.text:Paf' galaxy.datatypes.registry DEBUG 2024-02-23 12:54:49,730 [pN:main,p:69576,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.interval:Interval' galaxy.datatypes.registry DEBUG 2024-02-23 12:54:49,730 [pN:main,p:69576,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.tabular:Sam' galaxy.datatypes.registry DEBUG 2024-02-23 12:54:49,730 [pN:main,p:69576,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.data:Newick' galaxy.datatypes.registry DEBUG 2024-02-23 12:54:49,730 [pN:main,p:69576,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.data:Nexus' galaxy.datatypes.registry DEBUG 2024-02-23 12:54:49,730 [pN:main,p:69576,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.text:IQTree' galaxy.datatypes.registry DEBUG 2024-02-23 12:54:49,730 [pN:main,p:69576,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.text:Obo' galaxy.datatypes.registry DEBUG 2024-02-23 12:54:49,730 [pN:main,p:69576,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.text:Arff' galaxy.datatypes.registry DEBUG 2024-02-23 12:54:49,731 [pN:main,p:69576,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.text:Ipynb' galaxy.datatypes.registry DEBUG 2024-02-23 12:54:49,731 [pN:main,p:69576,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.text:Biom1' galaxy.datatypes.registry DEBUG 2024-02-23 12:54:49,731 [pN:main,p:69576,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.text:ImgtJson' galaxy.datatypes.registry DEBUG 2024-02-23 12:54:49,731 [pN:main,p:69576,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.text:GeoJson' galaxy.datatypes.registry DEBUG 2024-02-23 12:54:49,731 [pN:main,p:69576,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.text:PithyaResult' galaxy.datatypes.registry DEBUG 2024-02-23 12:54:49,731 [pN:main,p:69576,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.text:BCSLts' galaxy.datatypes.registry DEBUG 2024-02-23 12:54:49,731 [pN:main,p:69576,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.text:Json' galaxy.datatypes.registry DEBUG 2024-02-23 12:54:49,731 [pN:main,p:69576,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.genetics:GenotypeMatrix' galaxy.datatypes.registry DEBUG 2024-02-23 12:54:49,731 [pN:main,p:69576,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.genetics:DataIn' galaxy.datatypes.registry DEBUG 2024-02-23 12:54:49,731 [pN:main,p:69576,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.genetics:MarkerMap' galaxy.datatypes.registry DEBUG 2024-02-23 12:54:49,731 [pN:main,p:69576,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.genetics:AllegroLOD' galaxy.datatypes.registry DEBUG 2024-02-23 12:54:49,731 [pN:main,p:69576,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.sequence:RNADotPlotMatrix' galaxy.datatypes.registry DEBUG 2024-02-23 12:54:49,731 [pN:main,p:69576,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.sequence:DotBracket' galaxy.datatypes.registry DEBUG 2024-02-23 12:54:49,732 [pN:main,p:69576,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.tabular:CMAP' galaxy.datatypes.registry DEBUG 2024-02-23 12:54:49,732 [pN:main,p:69576,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.tabular:ConnectivityTable' galaxy.datatypes.registry DEBUG 2024-02-23 12:54:49,732 [pN:main,p:69576,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.tabular:CSV' galaxy.datatypes.registry DEBUG 2024-02-23 12:54:49,732 [pN:main,p:69576,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.metacyto:mSummary' galaxy.datatypes.registry DEBUG 2024-02-23 12:54:49,732 [pN:main,p:69576,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.metacyto:mStats' galaxy.datatypes.registry DEBUG 2024-02-23 12:54:49,732 [pN:main,p:69576,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.tabular:TSV' galaxy.datatypes.registry DEBUG 2024-02-23 12:54:49,732 [pN:main,p:69576,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.tabular:MatrixMarket' galaxy.datatypes.registry DEBUG 2024-02-23 12:54:49,732 [pN:main,p:69576,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.msa:Hmmer2' galaxy.datatypes.registry DEBUG 2024-02-23 12:54:49,732 [pN:main,p:69576,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.msa:Hmmer3' galaxy.datatypes.registry DEBUG 2024-02-23 12:54:49,732 [pN:main,p:69576,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.msa:Stockholm_1_0' galaxy.datatypes.registry DEBUG 2024-02-23 12:54:49,732 [pN:main,p:69576,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.msa:MauveXmfa' galaxy.datatypes.registry DEBUG 2024-02-23 12:54:49,732 [pN:main,p:69576,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.msa:InfernalCM' galaxy.datatypes.registry DEBUG 2024-02-23 12:54:49,733 [pN:main,p:69576,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.annotation:SnapHmm' galaxy.datatypes.registry DEBUG 2024-02-23 12:54:49,733 [pN:main,p:69576,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.microarrays:Cel' galaxy.datatypes.registry DEBUG 2024-02-23 12:54:49,733 [pN:main,p:69576,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.microarrays:Gpr' galaxy.datatypes.registry DEBUG 2024-02-23 12:54:49,733 [pN:main,p:69576,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.microarrays:Gal' galaxy.datatypes.registry DEBUG 2024-02-23 12:54:49,733 [pN:main,p:69576,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.binary:RData' galaxy.datatypes.registry DEBUG 2024-02-23 12:54:49,733 [pN:main,p:69576,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.binary:RDS' galaxy.datatypes.registry DEBUG 2024-02-23 12:54:49,733 [pN:main,p:69576,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.images:Mrc2014' galaxy.datatypes.registry DEBUG 2024-02-23 12:54:49,733 [pN:main,p:69576,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.images:Jpg' galaxy.datatypes.registry DEBUG 2024-02-23 12:54:49,733 [pN:main,p:69576,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.images:Png' galaxy.datatypes.registry DEBUG 2024-02-23 12:54:49,733 [pN:main,p:69576,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.images:OMETiff' galaxy.datatypes.registry DEBUG 2024-02-23 12:54:49,733 [pN:main,p:69576,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.images:Tiff' galaxy.datatypes.registry DEBUG 2024-02-23 12:54:49,733 [pN:main,p:69576,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.images:Bmp' galaxy.datatypes.registry DEBUG 2024-02-23 12:54:49,734 [pN:main,p:69576,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.images:Gif' galaxy.datatypes.registry DEBUG 2024-02-23 12:54:49,734 [pN:main,p:69576,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.images:Im' galaxy.datatypes.registry DEBUG 2024-02-23 12:54:49,734 [pN:main,p:69576,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.images:Pcd' galaxy.datatypes.registry DEBUG 2024-02-23 12:54:49,734 [pN:main,p:69576,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.images:Pcx' galaxy.datatypes.registry DEBUG 2024-02-23 12:54:49,734 [pN:main,p:69576,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.images:Ppm' galaxy.datatypes.registry DEBUG 2024-02-23 12:54:49,734 [pN:main,p:69576,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.images:Psd' galaxy.datatypes.registry DEBUG 2024-02-23 12:54:49,734 [pN:main,p:69576,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.images:Xbm' galaxy.datatypes.registry DEBUG 2024-02-23 12:54:49,734 [pN:main,p:69576,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.images:Rgb' galaxy.datatypes.registry DEBUG 2024-02-23 12:54:49,734 [pN:main,p:69576,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.images:Pbm' galaxy.datatypes.registry DEBUG 2024-02-23 12:54:49,734 [pN:main,p:69576,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.images:Pgm' galaxy.datatypes.registry DEBUG 2024-02-23 12:54:49,734 [pN:main,p:69576,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.images:Xpm' galaxy.datatypes.registry DEBUG 2024-02-23 12:54:49,734 [pN:main,p:69576,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.images:Eps' galaxy.datatypes.registry DEBUG 2024-02-23 12:54:49,734 [pN:main,p:69576,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.images:Rast' galaxy.datatypes.registry DEBUG 2024-02-23 12:54:49,735 [pN:main,p:69576,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.images:Tck' galaxy.datatypes.registry DEBUG 2024-02-23 12:54:49,735 [pN:main,p:69576,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.images:Trk' galaxy.datatypes.registry DEBUG 2024-02-23 12:54:49,735 [pN:main,p:69576,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.images:Nifti1' galaxy.datatypes.registry DEBUG 2024-02-23 12:54:49,735 [pN:main,p:69576,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.images:Nifti2' galaxy.datatypes.registry DEBUG 2024-02-23 12:54:49,735 [pN:main,p:69576,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.images:Star' galaxy.datatypes.registry DEBUG 2024-02-23 12:54:49,735 [pN:main,p:69576,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.media:Wav' galaxy.datatypes.registry DEBUG 2024-02-23 12:54:49,735 [pN:main,p:69576,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.media:Mkv' galaxy.datatypes.registry DEBUG 2024-02-23 12:54:49,735 [pN:main,p:69576,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.media:Mp3' galaxy.datatypes.registry DEBUG 2024-02-23 12:54:49,735 [pN:main,p:69576,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.media:Mp4' galaxy.datatypes.registry DEBUG 2024-02-23 12:54:49,735 [pN:main,p:69576,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.media:Flv' galaxy.datatypes.registry DEBUG 2024-02-23 12:54:49,735 [pN:main,p:69576,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.media:Mpg' galaxy.datatypes.registry DEBUG 2024-02-23 12:54:49,735 [pN:main,p:69576,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.speech:TextGrid' galaxy.datatypes.registry DEBUG 2024-02-23 12:54:49,736 [pN:main,p:69576,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.speech:BPF' galaxy.datatypes.registry DEBUG 2024-02-23 12:54:49,736 [pN:main,p:69576,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.larch:FEFFInput' galaxy.datatypes.registry DEBUG 2024-02-23 12:54:49,736 [pN:main,p:69576,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.larch:AthenaProject' galaxy.datatypes.registry DEBUG 2024-02-23 12:54:49,736 [pN:main,p:69576,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.text:Castep' galaxy.datatypes.registry DEBUG 2024-02-23 12:54:49,736 [pN:main,p:69576,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.text:CTLresult' galaxy.datatypes.registry DEBUG 2024-02-23 12:54:49,736 [pN:main,p:69576,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.text:FormattedDensity' galaxy.datatypes.registry DEBUG 2024-02-23 12:54:49,736 [pN:main,p:69576,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.text:Param' galaxy.datatypes.registry DEBUG 2024-02-23 12:54:49,736 [pN:main,p:69576,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.text:Yaml' galaxy.datatypes.registry DEBUG 2024-02-23 12:54:49,736 [pN:main,p:69576,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.binary:OxliCountGraph' galaxy.datatypes.registry DEBUG 2024-02-23 12:54:49,736 [pN:main,p:69576,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.binary:OxliNodeGraph' galaxy.datatypes.registry DEBUG 2024-02-23 12:54:49,736 [pN:main,p:69576,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.binary:OxliTagSet' galaxy.datatypes.registry DEBUG 2024-02-23 12:54:49,736 [pN:main,p:69576,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.binary:OxliStopTags' galaxy.datatypes.registry DEBUG 2024-02-23 12:54:49,737 [pN:main,p:69576,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.binary:OxliSubset' galaxy.datatypes.registry DEBUG 2024-02-23 12:54:49,737 [pN:main,p:69576,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.binary:OxliGraphLabels' galaxy.datatypes.registry DEBUG 2024-02-23 12:54:49,737 [pN:main,p:69576,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.binary:FITS' galaxy.datatypes.registry DEBUG 2024-02-23 12:54:49,737 [pN:main,p:69576,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.neo4j:Neo4jDBzip' galaxy.datatypes.registry DEBUG 2024-02-23 12:54:49,737 [pN:main,p:69576,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.text:PithyaProperty' galaxy.datatypes.registry DEBUG 2024-02-23 12:54:49,737 [pN:main,p:69576,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.text:PithyaModel' galaxy.datatypes.registry DEBUG 2024-02-23 12:54:49,737 [pN:main,p:69576,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.text:BCSLmodel' galaxy.datatypes.registry DEBUG 2024-02-23 12:54:49,737 [pN:main,p:69576,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.text:StormSample' galaxy.datatypes.registry DEBUG 2024-02-23 12:54:49,737 [pN:main,p:69576,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.text:StormCheck' galaxy.datatypes.registry DEBUG 2024-02-23 12:54:49,742 [pN:main,p:69576,tN:MainThread] Build site file [tool-data/shared/ucsc/ucsc_build_sites.txt] not found using sample [tool-data/shared/ucsc/ucsc_build_sites.txt.sample]. galaxy.datatypes.registry DEBUG 2024-02-23 12:54:49,742 [pN:main,p:69576,tN:MainThread] Loaded build site 'ucsc': tool-data/shared/ucsc/ucsc_build_sites.txt.sample with display sites: ['main', 'test', 'archaea', 'ucla'] galaxy.datatypes.registry DEBUG 2024-02-23 12:54:49,742 [pN:main,p:69576,tN:MainThread] Loaded build site 'gbrowse': tool-data/shared/gbrowse/gbrowse_build_sites.txt with display sites: ['modencode', 'sgd_yeast', 'tair', 'wormbase', 'wormbase_ws120', 'wormbase_ws140', 'wormbase_ws170', 'wormbase_ws180', 'wormbase_ws190', 'wormbase_ws200', 'wormbase_ws204', 'wormbase_ws210', 'wormbase_ws220', 'wormbase_ws225'] galaxy.datatypes.registry DEBUG 2024-02-23 12:54:49,742 [pN:main,p:69576,tN:MainThread] Loaded build site 'ensembl': tool-data/shared/ensembl/ensembl_sites.txt galaxy.datatypes.registry DEBUG 2024-02-23 12:54:49,742 [pN:main,p:69576,tN:MainThread] Loaded build site 'ensembl_data_url': tool-data/shared/ensembl/ensembl_sites_data_URL.txt galaxy.datatypes.registry DEBUG 2024-02-23 12:54:49,742 [pN:main,p:69576,tN:MainThread] Build site file [tool-data/shared/igv/igv_build_sites.txt] not found using sample [tool-data/shared/igv/igv_build_sites.txt.sample]. galaxy.datatypes.registry DEBUG 2024-02-23 12:54:49,743 [pN:main,p:69576,tN:MainThread] Loaded build site 'igv': tool-data/shared/igv/igv_build_sites.txt.sample galaxy.datatypes.registry DEBUG 2024-02-23 12:54:49,743 [pN:main,p:69576,tN:MainThread] Build site file [tool-data/shared/rviewer/rviewer_build_sites.txt] not found using sample [tool-data/shared/rviewer/rviewer_build_sites.txt.sample]. galaxy.datatypes.registry DEBUG 2024-02-23 12:54:49,743 [pN:main,p:69576,tN:MainThread] Loaded build site 'rviewer': tool-data/shared/rviewer/rviewer_build_sites.txt.sample galaxy.util.tool_shed.tool_shed_registry DEBUG 2024-02-23 12:54:49,744 [pN:main,p:69576,tN:MainThread] Loading references to tool sheds from /tmp/tmpijf8h9m9/tool_sheds_conf.xml galaxy.util.tool_shed.tool_shed_registry DEBUG 2024-02-23 12:54:49,744 [pN:main,p:69576,tN:MainThread] Loaded reference to tool shed: Target Shed galaxy.queue_worker INFO 2024-02-23 12:54:49,744 [pN:main,p:69576,tN:MainThread] Initializing main Galaxy Queue Worker on sqlalchemy+sqlite:////tmp/tmpijf8h9m9/galaxy.sqlite?isolation_level=IMMEDIATE galaxy.tool_util.data WARNING 2024-02-23 12:54:49,756 [pN:main,p:69576,tN:MainThread] Cannot find index file '/scratch/rico/galaxytools/tools/ncbi_fcs_adaptor/test-data/ncbi_fcs_adaptor_config.tsv' for tool data table 'ncbi_fcs_adaptor_config' galaxy.tool_util.data DEBUG 2024-02-23 12:54:49,756 [pN:main,p:69576,tN:MainThread] Loaded tool data table 'ncbi_fcs_adaptor_config' from file '/scratch/rico/galaxytools/tools/ncbi_fcs_adaptor/tool_data_table_conf.xml.test' galaxy.tool_util.data WARNING 2024-02-23 12:54:49,756 [pN:main,p:69576,tN:MainThread] Cannot find index file '/scratch/rico/galaxytools/tools/ncbi_fcs_adaptor/test-data/ncbi_fcs_adaptor_databases.loc' for tool data table 'ncbi_fcs_adaptor_databases' galaxy.tool_util.data DEBUG 2024-02-23 12:54:49,756 [pN:main,p:69576,tN:MainThread] Loaded tool data table 'ncbi_fcs_adaptor_databases' from file '/scratch/rico/galaxytools/tools/ncbi_fcs_adaptor/tool_data_table_conf.xml.test' galaxy.tool_util.data WARNING 2024-02-23 12:54:49,756 [pN:main,p:69576,tN:MainThread] Cannot find index file '/scratch/rico/galaxytools/tools/ncbi_fcs_adaptor/test-data/ncbi_fcs_adaptor_divisions.tsv' for tool data table 'ncbi_fcs_adaptor_divisions' galaxy.tool_util.data DEBUG 2024-02-23 12:54:49,757 [pN:main,p:69576,tN:MainThread] Loaded tool data table 'ncbi_fcs_adaptor_divisions' from file '/scratch/rico/galaxytools/tools/ncbi_fcs_adaptor/tool_data_table_conf.xml.test' galaxy.visualization.genomes ERROR 2024-02-23 12:54:49,761 [pN:main,p:69576,tN:MainThread] Error reading twobit.loc Traceback (most recent call last): File "/scratch/rico/galaxy/lib/galaxy/visualization/genomes.py", line 220, in reload_genomes with open(twobit_path) as f: FileNotFoundError: [Errno 2] No such file or directory: '/scratch/rico/galaxy/tool-data/twobit.loc' galaxy.util WARNING 2024-02-23 12:54:50,010 [pN:main,p:69576,tN:MainThread] directory not found: /scratch/rico/galaxy/lib/galaxy/util/../../../config/plugins/activities galaxy.tools WARNING 2024-02-23 12:54:50,011 [pN:main,p:69576,tN:MainThread] The default shed tool config file (/tmp/tmpijf8h9m9/shed_tool_conf.xml) has been added to the tool_config_file option, if this is not the desired behavior, please set shed_tool_config_file to your primary shed-enabled tool config file galaxy.tool_util.toolbox.base INFO 2024-02-23 12:54:50,011 [pN:main,p:69576,tN:MainThread] Parsing the tool configuration /tmp/tmpijf8h9m9/tool_conf.xml galaxy.tool_util.toolbox.base DEBUG 2024-02-23 12:54:50,011 [pN:main,p:69576,tN:MainThread] Tool path for tool configuration /tmp/tmpijf8h9m9/tool_conf.xml is None galaxy.tool_util.toolbox.base DEBUG 2024-02-23 12:54:50,021 [pN:main,p:69576,tN:MainThread] Loaded tool id: upload1, version: 1.1.7 into tool panel.. galaxy.tool_util.toolbox.base DEBUG 2024-02-23 12:54:50,025 [pN:main,p:69576,tN:MainThread] Loaded tool id: ncbi_fcs_adaptor, version: 0.5.0+galaxy0 into tool panel.. galaxy.tools WARNING 2024-02-23 12:54:50,025 [pN:main,p:69576,tN:MainThread] The default shed tool config file (/tmp/tmpijf8h9m9/shed_tool_conf.xml) has been added to the tool_config_file option, if this is not the desired behavior, please set shed_tool_config_file to your primary shed-enabled tool config file galaxy.tool_util.toolbox.base INFO 2024-02-23 12:54:50,025 [pN:main,p:69576,tN:MainThread] Parsing the tool configuration /tmp/tmpijf8h9m9/shed_tools_conf.xml galaxy.tool_util.toolbox.base DEBUG 2024-02-23 12:54:50,025 [pN:main,p:69576,tN:MainThread] Tool path for shed tool configuration /tmp/tmpijf8h9m9/shed_tools_conf.xml is /tmp/tmpijf8h9m9/shed_tools galaxy.tools WARNING 2024-02-23 12:54:50,025 [pN:main,p:69576,tN:MainThread] The default shed tool config file (/tmp/tmpijf8h9m9/shed_tool_conf.xml) has been added to the tool_config_file option, if this is not the desired behavior, please set shed_tool_config_file to your primary shed-enabled tool config file galaxy.tool_util.toolbox.base INFO 2024-02-23 12:54:50,025 [pN:main,p:69576,tN:MainThread] Parsing the tool configuration /tmp/tmpijf8h9m9/empty_tool_conf.xml galaxy.tool_util.toolbox.base DEBUG 2024-02-23 12:54:50,025 [pN:main,p:69576,tN:MainThread] Tool path for tool configuration /tmp/tmpijf8h9m9/empty_tool_conf.xml is None galaxy.tool_util.toolbox.base DEBUG 2024-02-23 12:54:50,025 [pN:main,p:69576,tN:MainThread] Reading tools from config files finished (14.853 ms) galaxy.tool_util.toolbox.base DEBUG 2024-02-23 12:54:50,027 [pN:main,p:69576,tN:MainThread] Loaded tool id: upload1, version: 1.1.7 into tool panel.. galaxy.tool_util.toolbox.views.edam DEBUG 2024-02-23 12:54:50,028 [pN:main,p:69576,tN:MainThread] Loading EDAM tool panel finished (1.514 ms) galaxy.tool_util.toolbox.base DEBUG 2024-02-23 12:54:50,029 [pN:main,p:69576,tN:MainThread] Loaded tool id: upload1, version: 1.1.7 into tool panel.. galaxy.tool_util.toolbox.views.edam DEBUG 2024-02-23 12:54:50,029 [pN:main,p:69576,tN:MainThread] Loading EDAM tool panel finished (1.262 ms) galaxy.tool_util.toolbox.integrated_panel DEBUG 2024-02-23 12:54:50,029 [pN:main,p:69576,tN:MainThread] Writing integrated tool panel config file to '/tmp/tmpijf8h9m9/integrated_tool_panel_conf.xml' galaxy.util ERROR 2024-02-23 12:54:50,490 [pN:main,p:69576,tN:MainThread] Error parsing file /tmp/tmpijf8h9m9 Traceback (most recent call last): File "/scratch/rico/galaxy/lib/galaxy/util/__init__.py", line 305, in parse_xml tree = etree.parse(str(fname), parser=parser) File "src/lxml/etree.pyx", line 3541, in lxml.etree.parse File "src/lxml/parser.pxi", line 1879, in lxml.etree._parseDocument File "src/lxml/parser.pxi", line 1905, in lxml.etree._parseDocumentFromURL File "src/lxml/parser.pxi", line 1808, in lxml.etree._parseDocFromFile File "src/lxml/parser.pxi", line 1180, in lxml.etree._BaseParser._parseDocFromFile File "src/lxml/parser.pxi", line 618, in lxml.etree._ParserContext._handleParseResultDoc File "src/lxml/parser.pxi", line 728, in lxml.etree._handleParseResult File "src/lxml/parser.pxi", line 657, in lxml.etree._raiseParseError File "/tmp/tmpijf8h9m9", line 1 lxml.etree.XMLSyntaxError: Document is empty, line 1, column 1 galaxy.tools.data_manager.manager ERROR 2024-02-23 12:54:50,491 [pN:main,p:69576,tN:MainThread] There was an error parsing your Data Manager config file "/tmp/tmpijf8h9m9": Document is empty, line 1, column 1 (tmpijf8h9m9, line 1) galaxy.datatypes.registry DEBUG 2024-02-23 12:54:50,492 [pN:main,p:69576,tN:MainThread] Loaded display application 'ucsc_bam' for datatype 'bam', inherit=False. galaxy.datatypes.registry DEBUG 2024-02-23 12:54:50,493 [pN:main,p:69576,tN:MainThread] Loaded display application 'ensembl_bam' for datatype 'bam', inherit=False. galaxy.datatypes.display_applications.application ERROR 2024-02-23 12:54:50,494 [pN:main,p:69576,tN:MainThread] Error loading a set of Dynamic Display Application links: Unable to find data table named "igv_broad_genomes". galaxy.datatypes.registry DEBUG 2024-02-23 12:54:50,495 [pN:main,p:69576,tN:MainThread] Loaded display application 'igv_bam' for datatype 'bam', inherit=False. galaxy.datatypes.registry DEBUG 2024-02-23 12:54:50,496 [pN:main,p:69576,tN:MainThread] Loaded display application 'igb_bam' for datatype 'bam', inherit=False. galaxy.datatypes.display_applications.application ERROR 2024-02-23 12:54:50,496 [pN:main,p:69576,tN:MainThread] Error loading a set of Dynamic Display Application links: Unable to find data table named "bam_iobio". galaxy.datatypes.registry DEBUG 2024-02-23 12:54:50,496 [pN:main,p:69576,tN:MainThread] Loaded display application 'iobio_bam' for datatype 'bam', inherit=False. galaxy.datatypes.registry DEBUG 2024-02-23 12:54:50,496 [pN:main,p:69576,tN:MainThread] Loaded display application 'igb_bed' for datatype 'bed', inherit=False. galaxy.datatypes.registry DEBUG 2024-02-23 12:54:50,497 [pN:main,p:69576,tN:MainThread] Loaded display application 'igb_bedgraph' for datatype 'bedgraph', inherit=False. galaxy.datatypes.registry DEBUG 2024-02-23 12:54:50,497 [pN:main,p:69576,tN:MainThread] Loaded display application 'ucsc_bigbed' for datatype 'bigbed', inherit=False. galaxy.datatypes.registry DEBUG 2024-02-23 12:54:50,498 [pN:main,p:69576,tN:MainThread] Loaded display application 'igb_bb' for datatype 'bigbed', inherit=False. galaxy.datatypes.registry DEBUG 2024-02-23 12:54:50,498 [pN:main,p:69576,tN:MainThread] Loaded display application 'ucsc_bigwig' for datatype 'bigwig', inherit=False. galaxy.datatypes.registry DEBUG 2024-02-23 12:54:50,498 [pN:main,p:69576,tN:MainThread] Loaded display application 'igb_bigwig' for datatype 'bigwig', inherit=False. galaxy.datatypes.registry DEBUG 2024-02-23 12:54:50,499 [pN:main,p:69576,tN:MainThread] Loaded display application 'igv_bigwig' for datatype 'bigwig', inherit=False. galaxy.datatypes.display_applications.application ERROR 2024-02-23 12:54:50,499 [pN:main,p:69576,tN:MainThread] Error loading a set of Dynamic Display Application links: Unable to find data table named "intermine_simple_display". galaxy.datatypes.registry DEBUG 2024-02-23 12:54:50,499 [pN:main,p:69576,tN:MainThread] Loaded display application 'intermine_simple' for datatype 'intermine_tabular', inherit=False. galaxy.datatypes.display_applications.application ERROR 2024-02-23 12:54:50,500 [pN:main,p:69576,tN:MainThread] Error loading a set of Dynamic Display Application links: Unable to find data table named "igv_broad_genomes". galaxy.datatypes.registry DEBUG 2024-02-23 12:54:50,500 [pN:main,p:69576,tN:MainThread] Loaded display application 'igv_fasta' for datatype 'fasta', inherit=True. galaxy.datatypes.registry DEBUG 2024-02-23 12:54:50,501 [pN:main,p:69576,tN:MainThread] Loaded display application 'ensembl_gff' for datatype 'gff', inherit=True. galaxy.datatypes.display_applications.application ERROR 2024-02-23 12:54:50,502 [pN:main,p:69576,tN:MainThread] Error loading a set of Dynamic Display Application links: Unable to find data table named "igv_broad_genomes". galaxy.datatypes.registry DEBUG 2024-02-23 12:54:50,502 [pN:main,p:69576,tN:MainThread] Loaded display application 'igv_gff' for datatype 'gff', inherit=True. galaxy.datatypes.registry DEBUG 2024-02-23 12:54:50,502 [pN:main,p:69576,tN:MainThread] Loaded display application 'igb_gtf' for datatype 'gtf', inherit=False. galaxy.datatypes.registry DEBUG 2024-02-23 12:54:50,503 [pN:main,p:69576,tN:MainThread] Loaded display application 'ensembl_interval' for datatype 'interval', inherit=True. galaxy.datatypes.registry DEBUG 2024-02-23 12:54:50,505 [pN:main,p:69576,tN:MainThread] Loaded display application 'gbrowse_interval_as_bed' for datatype 'interval', inherit=True. galaxy.datatypes.registry DEBUG 2024-02-23 12:54:50,505 [pN:main,p:69576,tN:MainThread] Loaded display application 'rviewer_interval' for datatype 'interval', inherit=True. galaxy.datatypes.display_applications.application ERROR 2024-02-23 12:54:50,506 [pN:main,p:69576,tN:MainThread] Error loading a set of Dynamic Display Application links: Unable to find data table named "igv_broad_genomes". galaxy.datatypes.registry DEBUG 2024-02-23 12:54:50,506 [pN:main,p:69576,tN:MainThread] Loaded display application 'igv_interval_as_bed' for datatype 'interval', inherit=True. galaxy.datatypes.registry DEBUG 2024-02-23 12:54:50,506 [pN:main,p:69576,tN:MainThread] Loaded display application 'avivator' for datatype 'ome.tiff', inherit=False. galaxy.datatypes.display_applications.application ERROR 2024-02-23 12:54:50,506 [pN:main,p:69576,tN:MainThread] Error loading a set of Dynamic Display Application links: Unable to find data table named "q2view_display". galaxy.datatypes.registry DEBUG 2024-02-23 12:54:50,506 [pN:main,p:69576,tN:MainThread] Loaded display application 'q2view' for datatype 'qza', inherit=False. galaxy.datatypes.display_applications.application ERROR 2024-02-23 12:54:50,506 [pN:main,p:69576,tN:MainThread] Error loading a set of Dynamic Display Application links: Unable to find data table named "q2view_display". galaxy.datatypes.registry DEBUG 2024-02-23 12:54:50,506 [pN:main,p:69576,tN:MainThread] Loaded display application 'q2view' for datatype 'qzv', inherit=False. galaxy.datatypes.registry DEBUG 2024-02-23 12:54:50,507 [pN:main,p:69576,tN:MainThread] Loaded display application 'ucsc_maf_customtrack' for datatype 'mafcustomtrack', inherit=False. galaxy.datatypes.registry DEBUG 2024-02-23 12:54:50,507 [pN:main,p:69576,tN:MainThread] Loaded display application 'minerva_tabular' for datatype 'tabular', inherit=False. galaxy.datatypes.registry DEBUG 2024-02-23 12:54:50,508 [pN:main,p:69576,tN:MainThread] Loaded display application 'ucsc_vcf' for datatype 'vcf', inherit=False. galaxy.datatypes.display_applications.application ERROR 2024-02-23 12:54:50,508 [pN:main,p:69576,tN:MainThread] Error loading a set of Dynamic Display Application links: Unable to find data table named "igv_broad_genomes". galaxy.datatypes.registry DEBUG 2024-02-23 12:54:50,508 [pN:main,p:69576,tN:MainThread] Loaded display application 'igv_vcf' for datatype 'vcf', inherit=False. galaxy.datatypes.registry DEBUG 2024-02-23 12:54:50,509 [pN:main,p:69576,tN:MainThread] Loaded display application 'rviewer_vcf' for datatype 'vcf', inherit=True. galaxy.datatypes.display_applications.application ERROR 2024-02-23 12:54:50,509 [pN:main,p:69576,tN:MainThread] Error loading a set of Dynamic Display Application links: Unable to find data table named "vcf_iobio". galaxy.datatypes.registry DEBUG 2024-02-23 12:54:50,509 [pN:main,p:69576,tN:MainThread] Loaded display application 'iobio_vcf' for datatype 'vcf', inherit=False. galaxy.datatypes.registry DEBUG 2024-02-23 12:54:50,509 [pN:main,p:69576,tN:MainThread] Loaded display application 'igb_wig' for datatype 'wig', inherit=False. galaxy.datatypes.display_applications.application ERROR 2024-02-23 12:54:50,510 [pN:main,p:69576,tN:MainThread] Error loading a set of Dynamic Display Application links: Unable to find data table named "igv_broad_genomes". galaxy.datatypes.registry DEBUG 2024-02-23 12:54:50,510 [pN:main,p:69576,tN:MainThread] Loaded display application 'igv_vcf' for datatype 'vcf_bgzip', inherit=False. galaxy.datatypes.display_applications.application ERROR 2024-02-23 12:54:50,510 [pN:main,p:69576,tN:MainThread] Error loading a set of Dynamic Display Application links: Unable to find data table named "igv_broad_genomes". galaxy.datatypes.registry DEBUG 2024-02-23 12:54:50,510 [pN:main,p:69576,tN:MainThread] Loaded display application 'igv_genbank' for datatype 'genbank', inherit=False. galaxy.datatypes.display_applications.application ERROR 2024-02-23 12:54:50,511 [pN:main,p:69576,tN:MainThread] Error loading a set of Dynamic Display Application links: Unable to find data table named "biom_simple_display". galaxy.datatypes.registry DEBUG 2024-02-23 12:54:50,511 [pN:main,p:69576,tN:MainThread] Loaded display application 'biom_simple' for datatype 'biom1', inherit=False. galaxy.datatypes.display_applications.application ERROR 2024-02-23 12:54:50,511 [pN:main,p:69576,tN:MainThread] Error loading a set of Dynamic Display Application links: Unable to find data table named "icn3d_simple_display". galaxy.datatypes.registry DEBUG 2024-02-23 12:54:50,511 [pN:main,p:69576,tN:MainThread] Loaded display application 'icn3d_simple' for datatype 'sdf', inherit=False. galaxy.datatypes.display_applications.application ERROR 2024-02-23 12:54:50,511 [pN:main,p:69576,tN:MainThread] Error loading a set of Dynamic Display Application links: Unable to find data table named "icn3d_simple_display". galaxy.datatypes.registry DEBUG 2024-02-23 12:54:50,511 [pN:main,p:69576,tN:MainThread] Loaded display application 'icn3d_simple' for datatype 'mol2', inherit=False. galaxy.datatypes.display_applications.application ERROR 2024-02-23 12:54:50,511 [pN:main,p:69576,tN:MainThread] Error loading a set of Dynamic Display Application links: Unable to find data table named "icn3d_simple_display". galaxy.datatypes.registry DEBUG 2024-02-23 12:54:50,511 [pN:main,p:69576,tN:MainThread] Loaded display application 'icn3d_simple' for datatype 'pdb', inherit=False. galaxy.datatypes.registry DEBUG 2024-02-23 12:54:50,512 [pN:main,p:69576,tN:MainThread] Loaded display application 'ucsc_trackhub' for datatype 'trackhub', inherit=False. galaxy.datatypes.registry DEBUG 2024-02-23 12:54:50,512 [pN:main,p:69576,tN:MainThread] Adding inherited display application 'ensembl_interval' to datatype 'bed' galaxy.datatypes.registry DEBUG 2024-02-23 12:54:50,512 [pN:main,p:69576,tN:MainThread] Adding inherited display application 'gbrowse_interval_as_bed' to datatype 'bed' galaxy.datatypes.registry DEBUG 2024-02-23 12:54:50,512 [pN:main,p:69576,tN:MainThread] Adding inherited display application 'rviewer_interval' to datatype 'bed' galaxy.datatypes.registry DEBUG 2024-02-23 12:54:50,512 [pN:main,p:69576,tN:MainThread] Adding inherited display application 'igv_interval_as_bed' to datatype 'bed' galaxy.datatypes.registry DEBUG 2024-02-23 12:54:50,512 [pN:main,p:69576,tN:MainThread] Adding inherited display application 'ensembl_interval' to datatype 'bedgraph' galaxy.datatypes.registry DEBUG 2024-02-23 12:54:50,512 [pN:main,p:69576,tN:MainThread] Adding inherited display application 'gbrowse_interval_as_bed' to datatype 'bedgraph' galaxy.datatypes.registry DEBUG 2024-02-23 12:54:50,512 [pN:main,p:69576,tN:MainThread] Adding inherited display application 'rviewer_interval' to datatype 'bedgraph' galaxy.datatypes.registry DEBUG 2024-02-23 12:54:50,512 [pN:main,p:69576,tN:MainThread] Adding inherited display application 'igv_interval_as_bed' to datatype 'bedgraph' galaxy.datatypes.registry DEBUG 2024-02-23 12:54:50,512 [pN:main,p:69576,tN:MainThread] Adding inherited display application 'ensembl_interval' to datatype 'bedstrict' galaxy.datatypes.registry DEBUG 2024-02-23 12:54:50,512 [pN:main,p:69576,tN:MainThread] Adding inherited display application 'gbrowse_interval_as_bed' to datatype 'bedstrict' galaxy.datatypes.registry DEBUG 2024-02-23 12:54:50,512 [pN:main,p:69576,tN:MainThread] Adding inherited display application 'rviewer_interval' to datatype 'bedstrict' galaxy.datatypes.registry DEBUG 2024-02-23 12:54:50,512 [pN:main,p:69576,tN:MainThread] Adding inherited display application 'igv_interval_as_bed' to datatype 'bedstrict' galaxy.datatypes.registry DEBUG 2024-02-23 12:54:50,512 [pN:main,p:69576,tN:MainThread] Adding inherited display application 'ensembl_interval' to datatype 'bed6' galaxy.datatypes.registry DEBUG 2024-02-23 12:54:50,512 [pN:main,p:69576,tN:MainThread] Adding inherited display application 'gbrowse_interval_as_bed' to datatype 'bed6' galaxy.datatypes.registry DEBUG 2024-02-23 12:54:50,512 [pN:main,p:69576,tN:MainThread] Adding inherited display application 'rviewer_interval' to datatype 'bed6' galaxy.datatypes.registry DEBUG 2024-02-23 12:54:50,512 [pN:main,p:69576,tN:MainThread] Adding inherited display application 'igv_interval_as_bed' to datatype 'bed6' galaxy.datatypes.registry DEBUG 2024-02-23 12:54:50,513 [pN:main,p:69576,tN:MainThread] Adding inherited display application 'ensembl_interval' to datatype 'bed12' galaxy.datatypes.registry DEBUG 2024-02-23 12:54:50,513 [pN:main,p:69576,tN:MainThread] Adding inherited display application 'gbrowse_interval_as_bed' to datatype 'bed12' galaxy.datatypes.registry DEBUG 2024-02-23 12:54:50,513 [pN:main,p:69576,tN:MainThread] Adding inherited display application 'rviewer_interval' to datatype 'bed12' galaxy.datatypes.registry DEBUG 2024-02-23 12:54:50,513 [pN:main,p:69576,tN:MainThread] Adding inherited display application 'igv_interval_as_bed' to datatype 'bed12' galaxy.datatypes.registry DEBUG 2024-02-23 12:54:50,513 [pN:main,p:69576,tN:MainThread] Adding inherited display application 'ensembl_interval' to datatype 'probed' galaxy.datatypes.registry DEBUG 2024-02-23 12:54:50,513 [pN:main,p:69576,tN:MainThread] Adding inherited display application 'gbrowse_interval_as_bed' to datatype 'probed' galaxy.datatypes.registry DEBUG 2024-02-23 12:54:50,513 [pN:main,p:69576,tN:MainThread] Adding inherited display application 'rviewer_interval' to datatype 'probed' galaxy.datatypes.registry DEBUG 2024-02-23 12:54:50,513 [pN:main,p:69576,tN:MainThread] Adding inherited display application 'igv_interval_as_bed' to datatype 'probed' galaxy.datatypes.registry DEBUG 2024-02-23 12:54:50,513 [pN:main,p:69576,tN:MainThread] Adding inherited display application 'ensembl_interval' to datatype 'chrint' galaxy.datatypes.registry DEBUG 2024-02-23 12:54:50,513 [pN:main,p:69576,tN:MainThread] Adding inherited display application 'gbrowse_interval_as_bed' to datatype 'chrint' galaxy.datatypes.registry DEBUG 2024-02-23 12:54:50,513 [pN:main,p:69576,tN:MainThread] Adding inherited display application 'rviewer_interval' to datatype 'chrint' galaxy.datatypes.registry DEBUG 2024-02-23 12:54:50,513 [pN:main,p:69576,tN:MainThread] Adding inherited display application 'igv_interval_as_bed' to datatype 'chrint' galaxy.datatypes.registry DEBUG 2024-02-23 12:54:50,513 [pN:main,p:69576,tN:MainThread] Adding inherited display application 'igv_fasta' to datatype 'fasta.gz' galaxy.datatypes.registry DEBUG 2024-02-23 12:54:50,513 [pN:main,p:69576,tN:MainThread] Adding inherited display application 'ensembl_gff' to datatype 'gff3' galaxy.datatypes.registry DEBUG 2024-02-23 12:54:50,513 [pN:main,p:69576,tN:MainThread] Adding inherited display application 'igv_gff' to datatype 'gff3' galaxy.datatypes.registry DEBUG 2024-02-23 12:54:50,513 [pN:main,p:69576,tN:MainThread] Adding inherited display application 'ensembl_gff' to datatype 'gff3.gz' galaxy.datatypes.registry DEBUG 2024-02-23 12:54:50,514 [pN:main,p:69576,tN:MainThread] Adding inherited display application 'igv_gff' to datatype 'gff3.gz' galaxy.datatypes.registry DEBUG 2024-02-23 12:54:50,514 [pN:main,p:69576,tN:MainThread] Adding inherited display application 'ensembl_gff' to datatype 'gff3.bz2' galaxy.datatypes.registry DEBUG 2024-02-23 12:54:50,514 [pN:main,p:69576,tN:MainThread] Adding inherited display application 'igv_gff' to datatype 'gff3.bz2' galaxy.datatypes.registry DEBUG 2024-02-23 12:54:50,514 [pN:main,p:69576,tN:MainThread] Adding inherited display application 'ensembl_gff' to datatype 'gtf' galaxy.datatypes.registry DEBUG 2024-02-23 12:54:50,514 [pN:main,p:69576,tN:MainThread] Adding inherited display application 'igv_gff' to datatype 'gtf' galaxy.datatypes.registry DEBUG 2024-02-23 12:54:50,515 [pN:main,p:69576,tN:MainThread] Adding inherited display application 'ensembl_interval' to datatype 'encodepeak' galaxy.datatypes.registry DEBUG 2024-02-23 12:54:50,515 [pN:main,p:69576,tN:MainThread] Adding inherited display application 'gbrowse_interval_as_bed' to datatype 'encodepeak' galaxy.datatypes.registry DEBUG 2024-02-23 12:54:50,515 [pN:main,p:69576,tN:MainThread] Adding inherited display application 'rviewer_interval' to datatype 'encodepeak' galaxy.datatypes.registry DEBUG 2024-02-23 12:54:50,515 [pN:main,p:69576,tN:MainThread] Adding inherited display application 'igv_interval_as_bed' to datatype 'encodepeak' galaxy.datatypes.registry DEBUG 2024-02-23 12:54:50,515 [pN:main,p:69576,tN:MainThread] Adding inherited display application 'igv_fasta' to datatype 'sequences' galaxy.datatypes.registry DEBUG 2024-02-23 12:54:50,515 [pN:main,p:69576,tN:MainThread] Adding inherited display application 'ensembl_interval' to datatype 'interval_tabix.gz' galaxy.datatypes.registry DEBUG 2024-02-23 12:54:50,515 [pN:main,p:69576,tN:MainThread] Adding inherited display application 'gbrowse_interval_as_bed' to datatype 'interval_tabix.gz' galaxy.datatypes.registry DEBUG 2024-02-23 12:54:50,515 [pN:main,p:69576,tN:MainThread] Adding inherited display application 'rviewer_interval' to datatype 'interval_tabix.gz' galaxy.datatypes.registry DEBUG 2024-02-23 12:54:50,515 [pN:main,p:69576,tN:MainThread] Adding inherited display application 'igv_interval_as_bed' to datatype 'interval_tabix.gz' galaxy.datatypes.registry DEBUG 2024-02-23 12:54:50,515 [pN:main,p:69576,tN:MainThread] Adding inherited display application 'ensembl_interval' to datatype 'juicer_medium_tabix.gz' galaxy.datatypes.registry DEBUG 2024-02-23 12:54:50,515 [pN:main,p:69576,tN:MainThread] Adding inherited display application 'gbrowse_interval_as_bed' to datatype 'juicer_medium_tabix.gz' galaxy.datatypes.registry DEBUG 2024-02-23 12:54:50,515 [pN:main,p:69576,tN:MainThread] Adding inherited display application 'rviewer_interval' to datatype 'juicer_medium_tabix.gz' galaxy.datatypes.registry DEBUG 2024-02-23 12:54:50,516 [pN:main,p:69576,tN:MainThread] Adding inherited display application 'igv_interval_as_bed' to datatype 'juicer_medium_tabix.gz' galaxy.datatypes.registry DEBUG 2024-02-23 12:54:50,516 [pN:main,p:69576,tN:MainThread] Adding inherited display application 'ensembl_interval' to datatype 'bed_tabix.gz' galaxy.datatypes.registry DEBUG 2024-02-23 12:54:50,516 [pN:main,p:69576,tN:MainThread] Adding inherited display application 'gbrowse_interval_as_bed' to datatype 'bed_tabix.gz' galaxy.datatypes.registry DEBUG 2024-02-23 12:54:50,516 [pN:main,p:69576,tN:MainThread] Adding inherited display application 'rviewer_interval' to datatype 'bed_tabix.gz' galaxy.datatypes.registry DEBUG 2024-02-23 12:54:50,516 [pN:main,p:69576,tN:MainThread] Adding inherited display application 'igv_interval_as_bed' to datatype 'bed_tabix.gz' galaxy.datatypes.registry DEBUG 2024-02-23 12:54:50,516 [pN:main,p:69576,tN:MainThread] Adding inherited display application 'ensembl_interval' to datatype 'gff_tabix.gz' galaxy.datatypes.registry DEBUG 2024-02-23 12:54:50,516 [pN:main,p:69576,tN:MainThread] Adding inherited display application 'gbrowse_interval_as_bed' to datatype 'gff_tabix.gz' galaxy.datatypes.registry DEBUG 2024-02-23 12:54:50,516 [pN:main,p:69576,tN:MainThread] Adding inherited display application 'rviewer_interval' to datatype 'gff_tabix.gz' galaxy.datatypes.registry DEBUG 2024-02-23 12:54:50,516 [pN:main,p:69576,tN:MainThread] Adding inherited display application 'igv_interval_as_bed' to datatype 'gff_tabix.gz' galaxy.datatypes.registry DEBUG 2024-02-23 12:54:50,517 [pN:main,p:69576,tN:MainThread] Adding inherited display application 'igv_fasta' to datatype 'mothur.align' galaxy.datatypes.registry DEBUG 2024-02-23 12:54:50,520 [pN:main,p:69576,tN:MainThread] Loaded converter: CONVERTER_uncompressed_to_gz galaxy.datatypes.registry DEBUG 2024-02-23 12:54:50,521 [pN:main,p:69576,tN:MainThread] Loaded converter: CONVERTER_gz_to_uncompressed galaxy.datatypes.registry DEBUG 2024-02-23 12:54:50,522 [pN:main,p:69576,tN:MainThread] Loaded converter: CONVERTER_uncompressed_to_gz galaxy.datatypes.registry DEBUG 2024-02-23 12:54:50,523 [pN:main,p:69576,tN:MainThread] Loaded converter: CONVERTER_gz_to_uncompressed galaxy.datatypes.registry DEBUG 2024-02-23 12:54:50,525 [pN:main,p:69576,tN:MainThread] Loaded converter: CONVERTER_uncompressed_to_gz galaxy.datatypes.registry DEBUG 2024-02-23 12:54:50,526 [pN:main,p:69576,tN:MainThread] Loaded converter: CONVERTER_gz_to_uncompressed galaxy.datatypes.registry DEBUG 2024-02-23 12:54:50,527 [pN:main,p:69576,tN:MainThread] Loaded converter: CONVERTER_Bam_Bai_0 galaxy.datatypes.registry DEBUG 2024-02-23 12:54:50,528 [pN:main,p:69576,tN:MainThread] Loaded converter: CONVERTER_bam_to_bigwig_0 galaxy.datatypes.registry DEBUG 2024-02-23 12:54:50,529 [pN:main,p:69576,tN:MainThread] Loaded converter: CONVERTER_bam_to_qname_sorted_bam galaxy.datatypes.registry DEBUG 2024-02-23 12:54:50,530 [pN:main,p:69576,tN:MainThread] Loaded converter: CONVERTER_bam_to_bigwig_0 galaxy.datatypes.registry DEBUG 2024-02-23 12:54:50,531 [pN:main,p:69576,tN:MainThread] Loaded converter: CONVERTER_bam_to_coodinate_sorted_bam galaxy.datatypes.registry DEBUG 2024-02-23 12:54:50,532 [pN:main,p:69576,tN:MainThread] Loaded converter: CONVERTER_bam_to_qname_sorted_bam galaxy.datatypes.registry DEBUG 2024-02-23 12:54:50,533 [pN:main,p:69576,tN:MainThread] Loaded converter: CONVERTER_cram_to_bam_0 galaxy.datatypes.registry DEBUG 2024-02-23 12:54:50,534 [pN:main,p:69576,tN:MainThread] Loaded converter: CONVERTER_bed_to_gff_0 galaxy.datatypes.registry DEBUG 2024-02-23 12:54:50,537 [pN:main,p:69576,tN:MainThread] Loaded converter: CONVERTER_interval_to_bgzip_0 galaxy.datatypes.registry DEBUG 2024-02-23 12:54:50,539 [pN:main,p:69576,tN:MainThread] Loaded converter: CONVERTER_interval_to_tabix_0 galaxy.datatypes.registry DEBUG 2024-02-23 12:54:50,540 [pN:main,p:69576,tN:MainThread] Loaded converter: CONVERTER_bed_gff_or_vcf_to_bigwig_0 galaxy.datatypes.registry DEBUG 2024-02-23 12:54:50,540 [pN:main,p:69576,tN:MainThread] Loaded converter: CONVERTER_bed_to_fli_0 galaxy.datatypes.registry DEBUG 2024-02-23 12:54:50,541 [pN:main,p:69576,tN:MainThread] Loaded converter: CONVERTER_bedgraph_to_bigwig galaxy.datatypes.registry DEBUG 2024-02-23 12:54:50,542 [pN:main,p:69576,tN:MainThread] Loaded converter: CONVERTER_len_to_linecount galaxy.datatypes.registry DEBUG 2024-02-23 12:54:50,543 [pN:main,p:69576,tN:MainThread] Loaded converter: CONVERTER_parquet_to_csv galaxy.datatypes.registry DEBUG 2024-02-23 12:54:50,546 [pN:main,p:69576,tN:MainThread] Loaded converter: bigwigtowig galaxy.datatypes.registry DEBUG 2024-02-23 12:54:50,548 [pN:main,p:69576,tN:MainThread] Loaded converter: CONVERTER_interval_to_bgzip_0 galaxy.datatypes.registry DEBUG 2024-02-23 12:54:50,550 [pN:main,p:69576,tN:MainThread] Loaded converter: CONVERTER_interval_to_tabix_0 galaxy.datatypes.registry DEBUG 2024-02-23 12:54:50,551 [pN:main,p:69576,tN:MainThread] Loaded converter: CONVERTER_bed_gff_or_vcf_to_bigwig_0 galaxy.datatypes.registry DEBUG 2024-02-23 12:54:50,552 [pN:main,p:69576,tN:MainThread] Loaded converter: csv_to_tabular galaxy.datatypes.registry DEBUG 2024-02-23 12:54:50,553 [pN:main,p:69576,tN:MainThread] Loaded converter: tabular_to_csv galaxy.datatypes.registry DEBUG 2024-02-23 12:54:50,554 [pN:main,p:69576,tN:MainThread] Loaded converter: CONVERTER_fasta_to_tabular galaxy.datatypes.registry DEBUG 2024-02-23 12:54:50,555 [pN:main,p:69576,tN:MainThread] Loaded converter: CONVERTER_fasta_to_bowtie_base_index galaxy.datatypes.registry DEBUG 2024-02-23 12:54:50,556 [pN:main,p:69576,tN:MainThread] Loaded converter: CONVERTER_fasta_to_bowtie_color_index galaxy.datatypes.registry DEBUG 2024-02-23 12:54:50,557 [pN:main,p:69576,tN:MainThread] Loaded converter: CONVERTER_fasta_to_2bit galaxy.datatypes.registry DEBUG 2024-02-23 12:54:50,558 [pN:main,p:69576,tN:MainThread] Loaded converter: CONVERTER_fasta_to_len galaxy.datatypes.registry DEBUG 2024-02-23 12:54:50,559 [pN:main,p:69576,tN:MainThread] Loaded converter: CONVERTER_fasta_to_fai galaxy.datatypes.registry DEBUG 2024-02-23 12:54:50,561 [pN:main,p:69576,tN:MainThread] Loaded converter: CONVERTER_uncompressed_to_gz galaxy.datatypes.registry DEBUG 2024-02-23 12:54:50,562 [pN:main,p:69576,tN:MainThread] Loaded converter: CONVERTER_gz_to_uncompressed galaxy.datatypes.registry DEBUG 2024-02-23 12:54:50,563 [pN:main,p:69576,tN:MainThread] Loaded converter: CONVERTER_fastq_to_fqtoc0 galaxy.datatypes.registry DEBUG 2024-02-23 12:54:50,564 [pN:main,p:69576,tN:MainThread] Loaded converter: CONVERTER_uncompressed_to_gz galaxy.datatypes.registry DEBUG 2024-02-23 12:54:50,565 [pN:main,p:69576,tN:MainThread] Loaded converter: CONVERTER_gz_to_uncompressed galaxy.datatypes.registry DEBUG 2024-02-23 12:54:50,566 [pN:main,p:69576,tN:MainThread] Loaded converter: CONVERTER_bz2_to_uncompressed galaxy.datatypes.registry DEBUG 2024-02-23 12:54:50,567 [pN:main,p:69576,tN:MainThread] Loaded converter: CONVERTER_fastq_to_fqtoc0 galaxy.datatypes.registry DEBUG 2024-02-23 12:54:50,569 [pN:main,p:69576,tN:MainThread] Loaded converter: CONVERTER_uncompressed_to_gz galaxy.datatypes.registry DEBUG 2024-02-23 12:54:50,570 [pN:main,p:69576,tN:MainThread] Loaded converter: CONVERTER_gz_to_uncompressed galaxy.datatypes.registry DEBUG 2024-02-23 12:54:50,571 [pN:main,p:69576,tN:MainThread] Loaded converter: CONVERTER_bz2_to_uncompressed galaxy.datatypes.registry DEBUG 2024-02-23 12:54:50,572 [pN:main,p:69576,tN:MainThread] Loaded converter: CONVERTER_fastq_to_fqtoc0 galaxy.datatypes.registry DEBUG 2024-02-23 12:54:50,573 [pN:main,p:69576,tN:MainThread] Loaded converter: CONVERTER_uncompressed_to_gz galaxy.datatypes.registry DEBUG 2024-02-23 12:54:50,574 [pN:main,p:69576,tN:MainThread] Loaded converter: CONVERTER_gz_to_uncompressed galaxy.datatypes.registry DEBUG 2024-02-23 12:54:50,576 [pN:main,p:69576,tN:MainThread] Loaded converter: CONVERTER_bz2_to_uncompressed galaxy.datatypes.registry DEBUG 2024-02-23 12:54:50,577 [pN:main,p:69576,tN:MainThread] Loaded converter: CONVERTER_fastq_to_fqtoc0 galaxy.datatypes.registry DEBUG 2024-02-23 12:54:50,578 [pN:main,p:69576,tN:MainThread] Loaded converter: CONVERTER_uncompressed_to_gz galaxy.datatypes.registry DEBUG 2024-02-23 12:54:50,580 [pN:main,p:69576,tN:MainThread] Loaded converter: CONVERTER_gz_to_uncompressed galaxy.datatypes.registry DEBUG 2024-02-23 12:54:50,581 [pN:main,p:69576,tN:MainThread] Loaded converter: CONVERTER_bz2_to_uncompressed galaxy.datatypes.registry DEBUG 2024-02-23 12:54:50,582 [pN:main,p:69576,tN:MainThread] Loaded converter: CONVERTER_fastq_to_fqtoc0 galaxy.datatypes.registry DEBUG 2024-02-23 12:54:50,584 [pN:main,p:69576,tN:MainThread] Loaded converter: CONVERTER_uncompressed_to_gz galaxy.datatypes.registry DEBUG 2024-02-23 12:54:50,585 [pN:main,p:69576,tN:MainThread] Loaded converter: CONVERTER_gz_to_uncompressed galaxy.datatypes.registry DEBUG 2024-02-23 12:54:50,586 [pN:main,p:69576,tN:MainThread] Loaded converter: CONVERTER_bz2_to_uncompressed galaxy.datatypes.registry DEBUG 2024-02-23 12:54:50,587 [pN:main,p:69576,tN:MainThread] Loaded converter: CONVERTER_gff_to_bed_0 galaxy.datatypes.registry DEBUG 2024-02-23 12:54:50,588 [pN:main,p:69576,tN:MainThread] Loaded converter: CONVERTER_gff_to_interval_index_0 galaxy.datatypes.registry DEBUG 2024-02-23 12:54:50,589 [pN:main,p:69576,tN:MainThread] Loaded converter: CONVERTER_bed_gff_or_vcf_to_bigwig_0 galaxy.datatypes.registry DEBUG 2024-02-23 12:54:50,590 [pN:main,p:69576,tN:MainThread] Loaded converter: CONVERTER_gff_to_fli_0 galaxy.datatypes.registry DEBUG 2024-02-23 12:54:50,593 [pN:main,p:69576,tN:MainThread] Loaded converter: CONVERTER_interval_to_bgzip_0 galaxy.datatypes.registry DEBUG 2024-02-23 12:54:50,595 [pN:main,p:69576,tN:MainThread] Loaded converter: CONVERTER_interval_to_tabix_0 galaxy.datatypes.registry DEBUG 2024-02-23 12:54:50,596 [pN:main,p:69576,tN:MainThread] Loaded converter: CONVERTER_uncompressed_to_gz galaxy.datatypes.registry DEBUG 2024-02-23 12:54:50,597 [pN:main,p:69576,tN:MainThread] Loaded converter: CONVERTER_gz_to_uncompressed galaxy.datatypes.registry DEBUG 2024-02-23 12:54:50,598 [pN:main,p:69576,tN:MainThread] Loaded converter: CONVERTER_bz2_to_uncompressed galaxy.datatypes.registry DEBUG 2024-02-23 12:54:50,599 [pN:main,p:69576,tN:MainThread] Loaded converter: CONVERTER_gff_to_interval_index_0 galaxy.datatypes.registry DEBUG 2024-02-23 12:54:50,600 [pN:main,p:69576,tN:MainThread] Loaded converter: CONVERTER_bed_gff_or_vcf_to_bigwig_0 galaxy.datatypes.registry DEBUG 2024-02-23 12:54:50,601 [pN:main,p:69576,tN:MainThread] Loaded converter: CONVERTER_interval_to_bed_0 galaxy.datatypes.registry DEBUG 2024-02-23 12:54:50,602 [pN:main,p:69576,tN:MainThread] Loaded converter: CONVERTER_interval_to_bedstrict_0 galaxy.datatypes.registry DEBUG 2024-02-23 12:54:50,603 [pN:main,p:69576,tN:MainThread] Loaded converter: CONVERTER_interval_to_bed6_0 galaxy.datatypes.registry DEBUG 2024-02-23 12:54:50,605 [pN:main,p:69576,tN:MainThread] Loaded converter: CONVERTER_interval_to_bed12_0 galaxy.datatypes.registry DEBUG 2024-02-23 12:54:50,607 [pN:main,p:69576,tN:MainThread] Loaded converter: CONVERTER_interval_to_bgzip_0 galaxy.datatypes.registry DEBUG 2024-02-23 12:54:50,609 [pN:main,p:69576,tN:MainThread] Loaded converter: CONVERTER_interval_to_tabix_0 galaxy.datatypes.registry DEBUG 2024-02-23 12:54:50,610 [pN:main,p:69576,tN:MainThread] Loaded converter: CONVERTER_interval_to_bigwig_0 galaxy.datatypes.registry DEBUG 2024-02-23 12:54:50,611 [pN:main,p:69576,tN:MainThread] Loaded converter: CONVERTER_picard_interval_list_to_bed6 galaxy.datatypes.registry DEBUG 2024-02-23 12:54:50,612 [pN:main,p:69576,tN:MainThread] Loaded converter: CONVERTER_tar_to_directory galaxy.datatypes.registry DEBUG 2024-02-23 12:54:50,614 [pN:main,p:69576,tN:MainThread] Loaded converter: CONVERTER_uncompressed_to_gz galaxy.datatypes.registry DEBUG 2024-02-23 12:54:50,615 [pN:main,p:69576,tN:MainThread] Loaded converter: CONVERTER_gz_to_uncompressed galaxy.datatypes.registry DEBUG 2024-02-23 12:54:50,616 [pN:main,p:69576,tN:MainThread] Loaded converter: CONVERTER_uncompressed_to_gz galaxy.datatypes.registry DEBUG 2024-02-23 12:54:50,617 [pN:main,p:69576,tN:MainThread] Loaded converter: CONVERTER_gz_to_uncompressed galaxy.datatypes.registry DEBUG 2024-02-23 12:54:50,619 [pN:main,p:69576,tN:MainThread] Loaded converter: CONVERTER_uncompressed_to_gz galaxy.datatypes.registry DEBUG 2024-02-23 12:54:50,620 [pN:main,p:69576,tN:MainThread] Loaded converter: CONVERTER_gz_to_uncompressed galaxy.datatypes.registry DEBUG 2024-02-23 12:54:50,621 [pN:main,p:69576,tN:MainThread] Loaded converter: CONVERTER_maf_to_fasta_0 galaxy.datatypes.registry DEBUG 2024-02-23 12:54:50,622 [pN:main,p:69576,tN:MainThread] Loaded converter: CONVERTER_maf_to_interval_0 galaxy.datatypes.registry DEBUG 2024-02-23 12:54:50,624 [pN:main,p:69576,tN:MainThread] Loaded converter: CONVERTER_interval_to_tabix_0 galaxy.datatypes.registry DEBUG 2024-02-23 12:54:50,626 [pN:main,p:69576,tN:MainThread] Loaded converter: CONVERTER_interval_to_bgzip_0 galaxy.datatypes.registry DEBUG 2024-02-23 12:54:50,627 [pN:main,p:69576,tN:MainThread] Loaded converter: CONVERTER_bed_gff_or_vcf_to_bigwig_0 galaxy.datatypes.registry DEBUG 2024-02-23 12:54:50,629 [pN:main,p:69576,tN:MainThread] Loaded converter: CONVERTER_interval_to_bgzip_0 galaxy.datatypes.registry DEBUG 2024-02-23 12:54:50,632 [pN:main,p:69576,tN:MainThread] Loaded converter: CONVERTER_interval_to_tabix_0 galaxy.datatypes.registry DEBUG 2024-02-23 12:54:50,633 [pN:main,p:69576,tN:MainThread] Loaded converter: CONVERTER_sam_to_unsorted_bam galaxy.datatypes.registry DEBUG 2024-02-23 12:54:50,634 [pN:main,p:69576,tN:MainThread] Loaded converter: CONVERTER_bam_to_coodinate_sorted_bam galaxy.datatypes.registry DEBUG 2024-02-23 12:54:50,635 [pN:main,p:69576,tN:MainThread] Loaded converter: CONVERTER_bam_to_qname_sorted_bam galaxy.datatypes.registry DEBUG 2024-02-23 12:54:50,636 [pN:main,p:69576,tN:MainThread] Loaded converter: CONVERTER_sam_to_bigwig_0 galaxy.datatypes.registry DEBUG 2024-02-23 12:54:50,637 [pN:main,p:69576,tN:MainThread] Loaded converter: tabular_to_dbnsfp galaxy.datatypes.registry DEBUG 2024-02-23 12:54:50,638 [pN:main,p:69576,tN:MainThread] Loaded converter: tabular_to_csv galaxy.datatypes.registry DEBUG 2024-02-23 12:54:50,639 [pN:main,p:69576,tN:MainThread] Loaded converter: CONVERTER_uncompressed_to_gz galaxy.datatypes.registry DEBUG 2024-02-23 12:54:50,640 [pN:main,p:69576,tN:MainThread] Loaded converter: CONVERTER_gz_to_uncompressed galaxy.datatypes.registry DEBUG 2024-02-23 12:54:50,643 [pN:main,p:69576,tN:MainThread] Loaded converter: CONVERTER_interval_to_bgzip_0 galaxy.datatypes.registry DEBUG 2024-02-23 12:54:50,644 [pN:main,p:69576,tN:MainThread] Loaded converter: CONVERTER_vcf_to_vcf_bgzip_0 galaxy.datatypes.registry DEBUG 2024-02-23 12:54:50,646 [pN:main,p:69576,tN:MainThread] Loaded converter: CONVERTER_interval_to_tabix_0 galaxy.datatypes.registry DEBUG 2024-02-23 12:54:50,647 [pN:main,p:69576,tN:MainThread] Loaded converter: CONVERTER_bed_gff_or_vcf_to_bigwig_0 galaxy.datatypes.registry DEBUG 2024-02-23 12:54:50,648 [pN:main,p:69576,tN:MainThread] Loaded converter: CONVERTER_uncompressed_to_gz galaxy.datatypes.registry DEBUG 2024-02-23 12:54:50,649 [pN:main,p:69576,tN:MainThread] Loaded converter: CONVERTER_bcf_uncompressed_to_bcf galaxy.datatypes.registry DEBUG 2024-02-23 12:54:50,651 [pN:main,p:69576,tN:MainThread] Loaded converter: CONVERTER_bcf_uncompressed_to_bcf galaxy.datatypes.registry DEBUG 2024-02-23 12:54:50,652 [pN:main,p:69576,tN:MainThread] Loaded converter: CONVERTER_wig_to_bigwig galaxy.datatypes.registry DEBUG 2024-02-23 12:54:50,653 [pN:main,p:69576,tN:MainThread] Loaded converter: CONVERTER_wiggle_to_interval_0 galaxy.datatypes.registry DEBUG 2024-02-23 12:54:50,654 [pN:main,p:69576,tN:MainThread] Loaded converter: CONVERTER_vcf_bgzip_to_tabix_0 galaxy.datatypes.registry DEBUG 2024-02-23 12:54:50,655 [pN:main,p:69576,tN:MainThread] Loaded converter: CONVERTER_gz_to_uncompressed galaxy.datatypes.registry DEBUG 2024-02-23 12:54:50,656 [pN:main,p:69576,tN:MainThread] Loaded converter: lped2fpedconvert galaxy.datatypes.registry DEBUG 2024-02-23 12:54:50,656 [pN:main,p:69576,tN:MainThread] Loaded converter: lped2pbedconvert galaxy.datatypes.registry DEBUG 2024-02-23 12:54:50,657 [pN:main,p:69576,tN:MainThread] Loaded converter: pbed2lpedconvert galaxy.datatypes.registry DEBUG 2024-02-23 12:54:50,658 [pN:main,p:69576,tN:MainThread] Loaded converter: pbed2ldindepconvert galaxy.datatypes.registry DEBUG 2024-02-23 12:54:50,660 [pN:main,p:69576,tN:MainThread] Loaded converter: CONVERTER_uncompressed_to_gz galaxy.datatypes.registry DEBUG 2024-02-23 12:54:50,661 [pN:main,p:69576,tN:MainThread] Loaded converter: CONVERTER_gz_to_uncompressed galaxy.datatypes.registry DEBUG 2024-02-23 12:54:50,662 [pN:main,p:69576,tN:MainThread] Loaded converter: CONVERTER_biom galaxy.datatypes.registry DEBUG 2024-02-23 12:54:50,664 [pN:main,p:69576,tN:MainThread] Loaded converter: CONVERTER_biom galaxy.datatypes.registry DEBUG 2024-02-23 12:54:50,669 [pN:main,p:69576,tN:MainThread] Loaded converter: CONVERTER_molecules galaxy.datatypes.registry DEBUG 2024-02-23 12:54:50,674 [pN:main,p:69576,tN:MainThread] Loaded converter: CONVERTER_molecules galaxy.datatypes.registry DEBUG 2024-02-23 12:54:50,679 [pN:main,p:69576,tN:MainThread] Loaded converter: CONVERTER_molecules galaxy.datatypes.registry DEBUG 2024-02-23 12:54:50,680 [pN:main,p:69576,tN:MainThread] Loaded converter: CONVERTER_SMILES_to_MOL galaxy.datatypes.registry DEBUG 2024-02-23 12:54:50,684 [pN:main,p:69576,tN:MainThread] Loaded converter: CONVERTER_molecules galaxy.datatypes.registry DEBUG 2024-02-23 12:54:50,686 [pN:main,p:69576,tN:MainThread] Loaded converter: CONVERTER_smiles_to_smiles galaxy.datatypes.registry DEBUG 2024-02-23 12:54:50,691 [pN:main,p:69576,tN:MainThread] Loaded converter: CONVERTER_molecules galaxy.datatypes.registry DEBUG 2024-02-23 12:54:50,695 [pN:main,p:69576,tN:MainThread] Loaded converter: CONVERTER_molecules galaxy.datatypes.registry DEBUG 2024-02-23 12:54:50,700 [pN:main,p:69576,tN:MainThread] Loaded converter: CONVERTER_molecules galaxy.datatypes.registry DEBUG 2024-02-23 12:54:50,705 [pN:main,p:69576,tN:MainThread] Loaded converter: CONVERTER_molecules galaxy.datatypes.registry DEBUG 2024-02-23 12:54:50,710 [pN:main,p:69576,tN:MainThread] Loaded converter: CONVERTER_molecules galaxy.datatypes.registry DEBUG 2024-02-23 12:54:50,715 [pN:main,p:69576,tN:MainThread] Loaded converter: CONVERTER_molecules galaxy.datatypes.registry DEBUG 2024-02-23 12:54:50,716 [pN:main,p:69576,tN:MainThread] Loaded converter: CONVERTER_inchi_to_mol galaxy.datatypes.registry DEBUG 2024-02-23 12:54:50,720 [pN:main,p:69576,tN:MainThread] Loaded converter: CONVERTER_molecules galaxy.datatypes.registry DEBUG 2024-02-23 12:54:50,725 [pN:main,p:69576,tN:MainThread] Loaded converter: CONVERTER_molecules galaxy.datatypes.registry DEBUG 2024-02-23 12:54:50,730 [pN:main,p:69576,tN:MainThread] Loaded converter: CONVERTER_molecules galaxy.datatypes.registry DEBUG 2024-02-23 12:54:50,735 [pN:main,p:69576,tN:MainThread] Loaded converter: CONVERTER_molecules galaxy.datatypes.registry DEBUG 2024-02-23 12:54:50,740 [pN:main,p:69576,tN:MainThread] Loaded converter: CONVERTER_molecules galaxy.datatypes.registry DEBUG 2024-02-23 12:54:50,745 [pN:main,p:69576,tN:MainThread] Loaded converter: CONVERTER_molecules galaxy.datatypes.registry DEBUG 2024-02-23 12:54:50,750 [pN:main,p:69576,tN:MainThread] Loaded converter: CONVERTER_molecules galaxy.datatypes.registry DEBUG 2024-02-23 12:54:50,755 [pN:main,p:69576,tN:MainThread] Loaded converter: CONVERTER_molecules galaxy.datatypes.registry DEBUG 2024-02-23 12:54:50,760 [pN:main,p:69576,tN:MainThread] Loaded converter: CONVERTER_molecules galaxy.datatypes.registry DEBUG 2024-02-23 12:54:50,765 [pN:main,p:69576,tN:MainThread] Loaded converter: CONVERTER_molecules galaxy.datatypes.registry DEBUG 2024-02-23 12:54:50,766 [pN:main,p:69576,tN:MainThread] Loaded converter: CONVERTER_mol2_to_mol galaxy.datatypes.registry DEBUG 2024-02-23 12:54:50,771 [pN:main,p:69576,tN:MainThread] Loaded converter: CONVERTER_molecules galaxy.datatypes.registry DEBUG 2024-02-23 12:54:50,772 [pN:main,p:69576,tN:MainThread] Loaded converter: CONVERTER_cml_to_smiles galaxy.datatypes.registry DEBUG 2024-02-23 12:54:50,777 [pN:main,p:69576,tN:MainThread] Loaded converter: CONVERTER_molecules galaxy.datatypes.registry DEBUG 2024-02-23 12:54:50,782 [pN:main,p:69576,tN:MainThread] Loaded converter: CONVERTER_molecules galaxy.datatypes.registry DEBUG 2024-02-23 12:54:50,786 [pN:main,p:69576,tN:MainThread] Loaded converter: CONVERTER_molecules galaxy.datatypes.registry DEBUG 2024-02-23 12:54:50,788 [pN:main,p:69576,tN:MainThread] Loaded converter: CONVERTER_Pdb_to_Gro_0 galaxy.datatypes.registry DEBUG 2024-02-23 12:54:50,789 [pN:main,p:69576,tN:MainThread] Loaded converter: CONVERTER_mdconvert galaxy.datatypes.registry DEBUG 2024-02-23 12:54:50,791 [pN:main,p:69576,tN:MainThread] Loaded converter: CONVERTER_mdconvert galaxy.datatypes.registry DEBUG 2024-02-23 12:54:50,793 [pN:main,p:69576,tN:MainThread] Loaded converter: CONVERTER_mdconvert galaxy.datatypes.registry DEBUG 2024-02-23 12:54:50,795 [pN:main,p:69576,tN:MainThread] Loaded converter: CONVERTER_mdconvert galaxy.datatypes.registry DEBUG 2024-02-23 12:54:50,797 [pN:main,p:69576,tN:MainThread] Loaded converter: CONVERTER_mdconvert galaxy.datatypes.registry DEBUG 2024-02-23 12:54:50,799 [pN:main,p:69576,tN:MainThread] Loaded converter: CONVERTER_mdconvert galaxy.datatypes.registry DEBUG 2024-02-23 12:54:50,800 [pN:main,p:69576,tN:MainThread] Loaded converter: CONVERTER_Gro_to_Pdb_0 galaxy.datatypes.registry DEBUG 2024-02-23 12:54:50,801 [pN:main,p:69576,tN:MainThread] Loaded converter: CONVERTER_ref_to_seq_taxomony galaxy.datatypes.registry DEBUG 2024-02-23 12:54:50,802 [pN:main,p:69576,tN:MainThread] Loaded converter: CONVERTER_neostorezip_to_neostore galaxy.datatypes.registry DEBUG 2024-02-23 12:54:50,804 [pN:main,p:69576,tN:MainThread] Loaded external metadata tool: __SET_METADATA__ galaxy.tools.special_tools DEBUG 2024-02-23 12:54:50,805 [pN:main,p:69576,tN:MainThread] Loaded history export tool: __EXPORT_HISTORY__ galaxy.tools.special_tools DEBUG 2024-02-23 12:54:50,806 [pN:main,p:69576,tN:MainThread] Loaded history export to uri tool: __EXPORT_HISTORY_TO_URI__ galaxy.tools.special_tools DEBUG 2024-02-23 12:54:50,807 [pN:main,p:69576,tN:MainThread] Loaded history import tool: __IMPORT_HISTORY__ galaxy.tools.special_tools DEBUG 2024-02-23 12:54:50,808 [pN:main,p:69576,tN:MainThread] Loaded data fetch tool: __DATA_FETCH__ galaxy.visualization.plugins.registry INFO 2024-02-23 12:54:50,809 [pN:main,p:69576,tN:MainThread] VisualizationsRegistry, loaded plugin: PCA_3Dplot galaxy.visualization.plugins.registry INFO 2024-02-23 12:54:50,810 [pN:main,p:69576,tN:MainThread] VisualizationsRegistry, loaded plugin: aequatus galaxy.visualization.plugins.registry INFO 2024-02-23 12:54:50,810 [pN:main,p:69576,tN:MainThread] VisualizationsRegistry, loaded plugin: annotate_image galaxy.visualization.plugins.config_parser INFO 2024-02-23 12:54:50,811 [pN:main,p:69576,tN:MainThread] template syntax is deprecated: use entry_point instead galaxy.visualization.plugins.registry INFO 2024-02-23 12:54:50,811 [pN:main,p:69576,tN:MainThread] VisualizationsRegistry, loaded plugin: chiraviz galaxy.visualization.plugins.config_parser INFO 2024-02-23 12:54:50,812 [pN:main,p:69576,tN:MainThread] Visualizations plugin disabled: Circster. Skipping... galaxy.visualization.plugins.config_parser INFO 2024-02-23 12:54:50,813 [pN:main,p:69576,tN:MainThread] template syntax is deprecated: use entry_point instead galaxy.visualization.plugins.registry INFO 2024-02-23 12:54:50,813 [pN:main,p:69576,tN:MainThread] VisualizationsRegistry, loaded plugin: csg galaxy.visualization.plugins.registry INFO 2024-02-23 12:54:50,814 [pN:main,p:69576,tN:MainThread] VisualizationsRegistry, loaded plugin: cytoscape galaxy.visualization.plugins.registry INFO 2024-02-23 12:54:50,815 [pN:main,p:69576,tN:MainThread] VisualizationsRegistry, loaded plugin: drawrna galaxy.visualization.plugins.registry INFO 2024-02-23 12:54:50,816 [pN:main,p:69576,tN:MainThread] VisualizationsRegistry, loaded plugin: editor galaxy.visualization.plugins.registry INFO 2024-02-23 12:54:50,817 [pN:main,p:69576,tN:MainThread] VisualizationsRegistry, loaded plugin: example galaxy.visualization.plugins.config_parser INFO 2024-02-23 12:54:50,818 [pN:main,p:69576,tN:MainThread] template syntax is deprecated: use entry_point instead galaxy.visualization.plugins.registry INFO 2024-02-23 12:54:50,818 [pN:main,p:69576,tN:MainThread] VisualizationsRegistry, loaded plugin: fits_image_viewer galaxy.visualization.plugins.config_parser INFO 2024-02-23 12:54:50,819 [pN:main,p:69576,tN:MainThread] template syntax is deprecated: use entry_point instead galaxy.visualization.plugins.registry INFO 2024-02-23 12:54:50,819 [pN:main,p:69576,tN:MainThread] VisualizationsRegistry, loaded plugin: graphviz galaxy.visualization.plugins.registry INFO 2024-02-23 12:54:50,820 [pN:main,p:69576,tN:MainThread] VisualizationsRegistry, loaded plugin: h5web galaxy.visualization.plugins.registry INFO 2024-02-23 12:54:50,822 [pN:main,p:69576,tN:MainThread] VisualizationsRegistry, loaded plugin: heatmap_cluster galaxy.visualization.plugins.registry INFO 2024-02-23 12:54:50,824 [pN:main,p:69576,tN:MainThread] VisualizationsRegistry, loaded plugin: heatmap_default galaxy.visualization.plugins.config_parser INFO 2024-02-23 12:54:50,825 [pN:main,p:69576,tN:MainThread] template syntax is deprecated: use entry_point instead galaxy.visualization.plugins.registry INFO 2024-02-23 12:54:50,825 [pN:main,p:69576,tN:MainThread] VisualizationsRegistry, loaded plugin: hivtrace galaxy.visualization.plugins.config_parser INFO 2024-02-23 12:54:50,825 [pN:main,p:69576,tN:MainThread] template syntax is deprecated: use entry_point instead galaxy.visualization.plugins.registry INFO 2024-02-23 12:54:50,825 [pN:main,p:69576,tN:MainThread] VisualizationsRegistry, loaded plugin: hyphyvision galaxy.visualization.plugins.registry INFO 2024-02-23 12:54:50,828 [pN:main,p:69576,tN:MainThread] VisualizationsRegistry, loaded plugin: jqplot_bar galaxy.visualization.plugins.registry INFO 2024-02-23 12:54:50,830 [pN:main,p:69576,tN:MainThread] VisualizationsRegistry, loaded plugin: jqplot_box galaxy.visualization.plugins.registry INFO 2024-02-23 12:54:50,832 [pN:main,p:69576,tN:MainThread] VisualizationsRegistry, loaded plugin: jqplot_histogram galaxy.visualization.plugins.registry INFO 2024-02-23 12:54:50,834 [pN:main,p:69576,tN:MainThread] VisualizationsRegistry, loaded plugin: jqplot_line galaxy.visualization.plugins.registry INFO 2024-02-23 12:54:50,836 [pN:main,p:69576,tN:MainThread] VisualizationsRegistry, loaded plugin: jqplot_scatter galaxy.visualization.plugins.config_parser INFO 2024-02-23 12:54:50,836 [pN:main,p:69576,tN:MainThread] template syntax is deprecated: use entry_point instead galaxy.visualization.plugins.registry INFO 2024-02-23 12:54:50,837 [pN:main,p:69576,tN:MainThread] VisualizationsRegistry, loaded plugin: audio_player galaxy.visualization.plugins.config_parser INFO 2024-02-23 12:54:50,837 [pN:main,p:69576,tN:MainThread] template syntax is deprecated: use entry_point instead galaxy.visualization.plugins.registry INFO 2024-02-23 12:54:50,837 [pN:main,p:69576,tN:MainThread] VisualizationsRegistry, loaded plugin: video_player galaxy.visualization.plugins.registry INFO 2024-02-23 12:54:50,838 [pN:main,p:69576,tN:MainThread] VisualizationsRegistry, loaded plugin: msa galaxy.visualization.plugins.config_parser INFO 2024-02-23 12:54:50,839 [pN:main,p:69576,tN:MainThread] template syntax is deprecated: use entry_point instead galaxy.visualization.plugins.registry INFO 2024-02-23 12:54:50,839 [pN:main,p:69576,tN:MainThread] VisualizationsRegistry, loaded plugin: mvpapp galaxy.visualization.plugins.registry INFO 2024-02-23 12:54:50,840 [pN:main,p:69576,tN:MainThread] VisualizationsRegistry, loaded plugin: ngl galaxy.visualization.plugins.registry INFO 2024-02-23 12:54:50,841 [pN:main,p:69576,tN:MainThread] VisualizationsRegistry, loaded plugin: nora galaxy.visualization.plugins.registry INFO 2024-02-23 12:54:50,844 [pN:main,p:69576,tN:MainThread] VisualizationsRegistry, loaded plugin: nvd3_bar galaxy.visualization.plugins.registry INFO 2024-02-23 12:54:50,846 [pN:main,p:69576,tN:MainThread] VisualizationsRegistry, loaded plugin: nvd3_bar_stacked galaxy.visualization.plugins.registry INFO 2024-02-23 12:54:50,848 [pN:main,p:69576,tN:MainThread] VisualizationsRegistry, loaded plugin: nvd3_histogram galaxy.visualization.plugins.registry INFO 2024-02-23 12:54:50,850 [pN:main,p:69576,tN:MainThread] VisualizationsRegistry, loaded plugin: nvd3_histogram_discrete galaxy.visualization.plugins.registry INFO 2024-02-23 12:54:50,852 [pN:main,p:69576,tN:MainThread] VisualizationsRegistry, loaded plugin: nvd3_horizontal galaxy.visualization.plugins.registry INFO 2024-02-23 12:54:50,854 [pN:main,p:69576,tN:MainThread] VisualizationsRegistry, loaded plugin: nvd3_horizontal_stacked galaxy.visualization.plugins.registry INFO 2024-02-23 12:54:50,856 [pN:main,p:69576,tN:MainThread] VisualizationsRegistry, loaded plugin: nvd3_line galaxy.visualization.plugins.registry INFO 2024-02-23 12:54:50,858 [pN:main,p:69576,tN:MainThread] VisualizationsRegistry, loaded plugin: nvd3_line_focus galaxy.visualization.plugins.registry INFO 2024-02-23 12:54:50,859 [pN:main,p:69576,tN:MainThread] VisualizationsRegistry, loaded plugin: nvd3_pie galaxy.visualization.plugins.registry INFO 2024-02-23 12:54:50,861 [pN:main,p:69576,tN:MainThread] VisualizationsRegistry, loaded plugin: nvd3_scatter galaxy.visualization.plugins.registry INFO 2024-02-23 12:54:50,863 [pN:main,p:69576,tN:MainThread] VisualizationsRegistry, loaded plugin: nvd3_stackedarea galaxy.visualization.plugins.registry INFO 2024-02-23 12:54:50,866 [pN:main,p:69576,tN:MainThread] VisualizationsRegistry, loaded plugin: nvd3_stackedarea_full galaxy.visualization.plugins.registry INFO 2024-02-23 12:54:50,868 [pN:main,p:69576,tN:MainThread] VisualizationsRegistry, loaded plugin: nvd3_stackedarea_stream galaxy.visualization.plugins.registry INFO 2024-02-23 12:54:50,868 [pN:main,p:69576,tN:MainThread] VisualizationsRegistry, loaded plugin: openlayers galaxy.visualization.plugins.registry INFO 2024-02-23 12:54:50,870 [pN:main,p:69576,tN:MainThread] VisualizationsRegistry, loaded plugin: openseadragon galaxy.visualization.plugins.registry INFO 2024-02-23 12:54:50,870 [pN:main,p:69576,tN:MainThread] VisualizationsRegistry, loaded plugin: phylocanvas galaxy.visualization.plugins.registry INFO 2024-02-23 12:54:50,872 [pN:main,p:69576,tN:MainThread] VisualizationsRegistry, loaded plugin: phyloviz galaxy.visualization.plugins.registry INFO 2024-02-23 12:54:50,872 [pN:main,p:69576,tN:MainThread] VisualizationsRegistry, loaded plugin: pv galaxy.visualization.plugins.registry INFO 2024-02-23 12:54:50,874 [pN:main,p:69576,tN:MainThread] VisualizationsRegistry, loaded plugin: scatterplot galaxy.visualization.plugins.config_parser INFO 2024-02-23 12:54:50,874 [pN:main,p:69576,tN:MainThread] Visualizations plugin disabled: Sweepster. Skipping... galaxy.visualization.plugins.registry INFO 2024-02-23 12:54:50,874 [pN:main,p:69576,tN:MainThread] VisualizationsRegistry, loaded plugin: trackster galaxy.visualization.plugins.registry INFO 2024-02-23 12:54:50,875 [pN:main,p:69576,tN:MainThread] VisualizationsRegistry, loaded plugin: ts_visjs galaxy.visualization.plugins.config_parser INFO 2024-02-23 12:54:50,875 [pN:main,p:69576,tN:MainThread] template syntax is deprecated: use entry_point instead galaxy.visualization.plugins.registry INFO 2024-02-23 12:54:50,876 [pN:main,p:69576,tN:MainThread] VisualizationsRegistry, loaded plugin: unipept galaxy.visualization.plugins.registry INFO 2024-02-23 12:54:50,876 [pN:main,p:69576,tN:MainThread] VisualizationsRegistry, loaded plugin: venn galaxy.tours._impl INFO 2024-02-23 12:54:50,900 [pN:main,p:69576,tN:MainThread] Loaded tour 'core.galaxy_ui' galaxy.tours._impl INFO 2024-02-23 12:54:50,918 [pN:main,p:69576,tN:MainThread] Loaded tour 'core.deferred' galaxy.tours._impl INFO 2024-02-23 12:54:50,931 [pN:main,p:69576,tN:MainThread] Loaded tour 'core.history' galaxy.tours._impl INFO 2024-02-23 12:54:50,941 [pN:main,p:69576,tN:MainThread] Loaded tour 'core.windows' galaxy.workflow.scheduling_manager INFO 2024-02-23 12:54:50,947 [pN:main,p:69576,tN:MainThread] No workflow schedulers plugin config file defined, using default scheduler. galaxy.web_stack.handlers INFO 2024-02-23 12:54:50,948 [pN:main,p:69576,tN:MainThread] WorkflowSchedulingManager: No job handler assignment method is set, defaulting to 'HANDLER_ASSIGNMENT_METHODS.DB_SKIP_LOCKED', set the `assign_with` attribute on <handlers> to override the default galaxy.workflow.scheduling_manager DEBUG 2024-02-23 12:54:50,948 [pN:main,p:69576,tN:MainThread] Starting workflow schedulers galaxy.app INFO 2024-02-23 12:54:50,950 [pN:main,p:69576,tN:MainThread] Galaxy app startup finished (2615.758 ms) galaxy.web.framework.base DEBUG 2024-02-23 12:54:50,977 [pN:main,p:69576,tN:MainThread] Enabling 'user' controller, class: User galaxy.web.framework.base DEBUG 2024-02-23 12:54:50,978 [pN:main,p:69576,tN:MainThread] Enabling 'data_manager' controller, class: DataManager galaxy.web.framework.base DEBUG 2024-02-23 12:54:50,978 [pN:main,p:69576,tN:MainThread] Enabling 'async' controller, class: ASync galaxy.web.framework.base DEBUG 2024-02-23 12:54:50,979 [pN:main,p:69576,tN:MainThread] Enabling 'tag' controller, class: TagsController galaxy.web.framework.base DEBUG 2024-02-23 12:54:50,984 [pN:main,p:69576,tN:MainThread] Enabling 'page' controller, class: PageController galaxy.web.framework.base DEBUG 2024-02-23 12:54:50,985 [pN:main,p:69576,tN:MainThread] Enabling 'root' controller, class: RootController galaxy.web.framework.base DEBUG 2024-02-23 12:54:50,985 [pN:main,p:69576,tN:MainThread] Enabling 'tool_runner' controller, class: ToolRunner galaxy.web.framework.base DEBUG 2024-02-23 12:54:50,986 [pN:main,p:69576,tN:MainThread] Enabling 'error' controller, class: Error galaxy.web.framework.base DEBUG 2024-02-23 12:54:50,986 [pN:main,p:69576,tN:MainThread] Enabling 'forms' controller, class: Forms galaxy.web.framework.base DEBUG 2024-02-23 12:54:51,001 [pN:main,p:69576,tN:MainThread] Enabling 'admin_toolshed' controller, class: AdminGalaxy galaxy.web.framework.base DEBUG 2024-02-23 12:54:51,001 [pN:main,p:69576,tN:MainThread] Enabling 'admin_toolshed' controller, class: AdminToolshed galaxy.web.framework.base DEBUG 2024-02-23 12:54:51,003 [pN:main,p:69576,tN:MainThread] Enabling 'visualization' controller, class: VisualizationController galaxy.web.framework.base DEBUG 2024-02-23 12:54:51,003 [pN:main,p:69576,tN:MainThread] Enabling 'shed_tool_static' controller, class: ShedToolStatic galaxy.web.framework.base DEBUG 2024-02-23 12:54:51,004 [pN:main,p:69576,tN:MainThread] Enabling 'authnz' controller, class: JSAppLauncher galaxy.web.framework.base DEBUG 2024-02-23 12:54:51,004 [pN:main,p:69576,tN:MainThread] Enabling 'authnz' controller, class: OIDC galaxy.web.framework.base DEBUG 2024-02-23 12:54:51,006 [pN:main,p:69576,tN:MainThread] Enabling 'workflow' controller, class: WorkflowController galaxy.web.framework.base DEBUG 2024-02-23 12:54:51,007 [pN:main,p:69576,tN:MainThread] Enabling 'history' controller, class: HistoryController galaxy.web.framework.base DEBUG 2024-02-23 12:54:51,036 [pN:main,p:69576,tN:MainThread] Enabling 'dataset' controller, class: DatasetInterface galaxy.web.framework.base DEBUG 2024-02-23 12:54:51,037 [pN:main,p:69576,tN:MainThread] Enabling 'admin' controller, class: AdminGalaxy galaxy.web.framework.base DEBUG 2024-02-23 12:54:51,747 [pN:main,p:69576,tN:MainThread] Enabling 'library_datasets' API controller, class: LibraryDatasetsController galaxy.web.framework.base DEBUG 2024-02-23 12:54:51,899 [pN:main,p:69576,tN:MainThread] Enabling 'jobs' API controller, class: JobController galaxy.web.framework.base DEBUG 2024-02-23 12:54:52,019 [pN:main,p:69576,tN:MainThread] Enabling 'job_files' API controller, class: JobFilesAPIController galaxy.web.framework.base DEBUG 2024-02-23 12:54:52,066 [pN:main,p:69576,tN:MainThread] Enabling 'toolshed' API controller, class: ToolShedController galaxy.web.framework.base DEBUG 2024-02-23 12:54:52,082 [pN:main,p:69576,tN:MainThread] Enabling 'tools' API controller, class: ToolsController galaxy.web.framework.base DEBUG 2024-02-23 12:54:52,203 [pN:main,p:69576,tN:MainThread] Enabling 'trs_consumer' API controller, class: TrsConsumeAPIController galaxy.web.framework.base DEBUG 2024-02-23 12:54:52,204 [pN:main,p:69576,tN:MainThread] Enabling 'history_dataset_extended_metadata' API controller, class: HistoryDatasetExtendMetadataController galaxy.web.framework.base DEBUG 2024-02-23 12:54:52,204 [pN:main,p:69576,tN:MainThread] Enabling 'library_dataset_extended_metadata' API controller, class: LibraryDatasetExtendMetadataController galaxy.web.framework.base DEBUG 2024-02-23 12:54:52,205 [pN:main,p:69576,tN:MainThread] Enabling 'container_resolution' API controller, class: ContainerResolutionAPIController galaxy.web.framework.base DEBUG 2024-02-23 12:54:52,206 [pN:main,p:69576,tN:MainThread] Enabling 'job_ports' API controller, class: JobPortsAPIController galaxy.web.framework.base DEBUG 2024-02-23 12:54:52,206 [pN:main,p:69576,tN:MainThread] Enabling 'tool_dependencies' API controller, class: ToolDependenciesAPIController galaxy.web.framework.base DEBUG 2024-02-23 12:54:52,346 [pN:main,p:69576,tN:MainThread] Enabling 'history_content_provenance' API controller, class: HDAProvenanceController galaxy.web.framework.base DEBUG 2024-02-23 12:54:52,346 [pN:main,p:69576,tN:MainThread] Enabling 'ldda_provenance' API controller, class: LDDAProvenanceController galaxy.web.framework.base DEBUG 2024-02-23 12:54:52,347 [pN:main,p:69576,tN:MainThread] Enabling 'tool_entry_points' API controller, class: ToolEntryPointsAPIController galaxy.web.framework.base DEBUG 2024-02-23 12:54:52,480 [pN:main,p:69576,tN:MainThread] Enabling 'authenticate' API controller, class: AuthenticationController galaxy.web.framework.base DEBUG 2024-02-23 12:54:52,903 [pN:main,p:69576,tN:MainThread] Enabling 'trs_search' API controller, class: TrsSearchAPIController galaxy.web.framework.base DEBUG 2024-02-23 12:54:52,956 [pN:main,p:69576,tN:MainThread] Enabling 'tool_shed_repositories' API controller, class: ToolShedRepositoriesController galaxy.web.framework.base DEBUG 2024-02-23 12:54:53,142 [pN:main,p:69576,tN:MainThread] Enabling 'forms' API controller, class: FormDefinitionAPIController galaxy.web.framework.base DEBUG 2024-02-23 12:54:53,418 [pN:main,p:69576,tN:MainThread] Enabling 'workflows' API controller, class: WorkflowsAPIController galaxy.web.framework.base DEBUG 2024-02-23 12:54:53,418 [pN:main,p:69576,tN:MainThread] Enabling 'uploads' API controller, class: UploadsAPIController galaxy.web.framework.base DEBUG 2024-02-23 12:54:54,210 [pN:main,p:69576,tN:MainThread] Enabling 'history_annotations' API controller, class: HistoryAnnotationsController galaxy.web.framework.base DEBUG 2024-02-23 12:54:54,210 [pN:main,p:69576,tN:MainThread] Enabling 'history_content_annotations' API controller, class: HistoryContentAnnotationsController galaxy.web.framework.base DEBUG 2024-02-23 12:54:54,210 [pN:main,p:69576,tN:MainThread] Enabling 'workflow_annotations' API controller, class: WorkflowAnnotationsController galaxy.web.framework.base DEBUG 2024-02-23 12:54:54,283 [pN:main,p:69576,tN:MainThread] Enabling 'visualizations' API controller, class: VisualizationsController galaxy.web.framework.base DEBUG 2024-02-23 12:54:54,283 [pN:main,p:69576,tN:MainThread] Enabling 'sanitize_allow' API controller, class: SanitizeAllowController galaxy.web.framework.base DEBUG 2024-02-23 12:54:54,284 [pN:main,p:69576,tN:MainThread] Enabling 'page_revisions' API controller, class: PageRevisionsController galaxy.web.framework.base DEBUG 2024-02-23 12:54:54,395 [pN:main,p:69576,tN:MainThread] Enabling 'library_contents' API controller, class: LibraryContentsController galaxy.web.framework.base DEBUG 2024-02-23 12:54:54,583 [pN:main,p:69576,tN:MainThread] Enabling 'users' API controller, class: UserAPIController galaxy.web.framework.base DEBUG 2024-02-23 12:54:54,584 [pN:main,p:69576,tN:MainThread] Enabling 'cloudauthz' API controller, class: CloudAuthzController galaxy.web.framework.base DEBUG 2024-02-23 12:54:54,585 [pN:main,p:69576,tN:MainThread] Enabling 'webhooks' API controller, class: WebhooksController galaxy.web.framework.base DEBUG 2024-02-23 12:54:54,679 [pN:main,p:69576,tN:MainThread] Enabling 'plugins' API controller, class: PluginsController galaxy.web.framework.base DEBUG 2024-02-23 12:54:54,716 [pN:main,p:69576,tN:MainThread] Enabling 'dynamic_tools' API controller, class: DynamicToolsController galaxy.webapps.util DEBUG 2024-02-23 12:54:54,997 [pN:main,p:69576,tN:MainThread] Enabling 'paste.httpexceptions' middleware galaxy.webapps.util DEBUG 2024-02-23 12:54:54,997 [pN:main,p:69576,tN:MainThread] Enabling 'RemoteUser' middleware galaxy.webapps.util DEBUG 2024-02-23 12:54:54,998 [pN:main,p:69576,tN:MainThread] Enabling 'ErrorMiddleware' middleware galaxy.webapps.util DEBUG 2024-02-23 12:54:54,998 [pN:main,p:69576,tN:MainThread] Enabling 'TusMiddleware' middleware galaxy.webapps.util DEBUG 2024-02-23 12:54:54,998 [pN:main,p:69576,tN:MainThread] Enabling 'XForwardedHostMiddleware' middleware galaxy.webapps.util DEBUG 2024-02-23 12:54:54,998 [pN:main,p:69576,tN:MainThread] Enabling 'RequestIDMiddleware' middleware galaxy.webapps.util DEBUG 2024-02-23 12:54:54,998 [pN:main,p:69576,tN:MainThread] Enabling 'build_url_map' middleware galaxy.webapps.galaxy.buildapp DEBUG 2024-02-23 12:54:54,998 [pN:main,p:69576,tN:MainThread] Prior to webapp return, Galaxy thread <_MainThread(MainThread, started 140550329923392)> is alive. galaxy.web_stack DEBUG 2024-02-23 12:54:56,597 [pN:main.1,p:69789,tN:Thread-2] server_name set to: main.1 galaxy.jobs.manager DEBUG 2024-02-23 12:54:56,598 [pN:main.1,p:69789,tN:Thread-2] Initializing job handler galaxy.jobs INFO 2024-02-23 12:54:56,599 [pN:main.1,p:69789,tN:Thread-2] Handler 'main.1' will load all configured runner plugins galaxy.jobs.runners.state_handler_factory DEBUG 2024-02-23 12:54:56,615 [pN:main.1,p:69789,tN:Thread-2] Loaded 'failure' state handler from module galaxy.jobs.runners.state_handlers.resubmit galaxy.jobs DEBUG 2024-02-23 12:54:56,616 [pN:main.1,p:69789,tN:Thread-2] Loaded job runner 'galaxy.jobs.runners.local:LocalJobRunner' as 'local' galaxy.jobs.handler DEBUG 2024-02-23 12:54:56,616 [pN:main.1,p:69789,tN:Thread-2] Loaded job runners plugins: local galaxy.jobs.runners DEBUG 2024-02-23 12:54:56,617 [pN:main.1,p:69789,tN:Thread-2] Starting 4 LocalRunner workers galaxy.jobs.handler DEBUG 2024-02-23 12:54:56,630 [pN:main.1,p:69789,tN:Thread-2] Handler queue starting for jobs assigned to handler: main.1 galaxy.jobs.handler INFO 2024-02-23 12:54:56,664 [pN:main.1,p:69789,tN:JobHandlerQueue.monitor_thread] Handler job grabber initialized with 'HANDLER_ASSIGNMENT_METHODS.DB_SKIP_LOCKED' assignment method for handler 'main.1', tag(s): galaxy.jobs.handler INFO 2024-02-23 12:54:56,665 [pN:main.1,p:69789,tN:Thread-2] job handler queue started galaxy.jobs.handler INFO 2024-02-23 12:54:56,671 [pN:main.1,p:69789,tN:Thread-2] job handler stop queue started galaxy.jobs.handler INFO 2024-02-23 12:54:56,674 [pN:main.1,p:69789,tN:WorkflowRequestMonitor.monitor_thread] Handler job grabber initialized with 'HANDLER_ASSIGNMENT_METHODS.DB_SKIP_LOCKED' assignment method for handler 'main.1', tag(s): None, _default_ galaxy.queue_worker INFO 2024-02-23 12:54:56,680 [pN:main.1,p:69789,tN:Thread-2] Binding and starting galaxy control worker for main.1 galaxy.queue_worker DEBUG 2024-02-23 12:54:56,689 [pN:main.1,p:69789,tN:Thread-2] Executing toolbox reload on 'main.1' galaxy.util WARNING 2024-02-23 12:54:56,728 [pN:main.1,p:69789,tN:Thread-2] directory not found: /scratch/rico/galaxy/lib/galaxy/util/../../../config/plugins/activities galaxy.tools WARNING 2024-02-23 12:54:56,730 [pN:main.1,p:69789,tN:Thread-2] The default shed tool config file (/tmp/tmpijf8h9m9/shed_tool_conf.xml) has been added to the tool_config_file option, if this is not the desired behavior, please set shed_tool_config_file to your primary shed-enabled tool config file galaxy.tool_util.toolbox.base INFO 2024-02-23 12:54:56,730 [pN:main.1,p:69789,tN:Thread-2] Parsing the tool configuration /tmp/tmpijf8h9m9/tool_conf.xml galaxy.tool_util.toolbox.base DEBUG 2024-02-23 12:54:56,731 [pN:main.1,p:69789,tN:Thread-2] Tool path for tool configuration /tmp/tmpijf8h9m9/tool_conf.xml is None galaxy.tools WARNING 2024-02-23 12:54:56,731 [pN:main.1,p:69789,tN:Thread-2] The default shed tool config file (/tmp/tmpijf8h9m9/shed_tool_conf.xml) has been added to the tool_config_file option, if this is not the desired behavior, please set shed_tool_config_file to your primary shed-enabled tool config file galaxy.tool_util.toolbox.base INFO 2024-02-23 12:54:56,731 [pN:main.1,p:69789,tN:Thread-2] Parsing the tool configuration /tmp/tmpijf8h9m9/shed_tools_conf.xml galaxy.tool_util.toolbox.base DEBUG 2024-02-23 12:54:56,731 [pN:main.1,p:69789,tN:Thread-2] Tool path for shed tool configuration /tmp/tmpijf8h9m9/shed_tools_conf.xml is /tmp/tmpijf8h9m9/shed_tools galaxy.tools WARNING 2024-02-23 12:54:56,732 [pN:main.1,p:69789,tN:Thread-2] The default shed tool config file (/tmp/tmpijf8h9m9/shed_tool_conf.xml) has been added to the tool_config_file option, if this is not the desired behavior, please set shed_tool_config_file to your primary shed-enabled tool config file galaxy.tool_util.toolbox.base INFO 2024-02-23 12:54:56,732 [pN:main.1,p:69789,tN:Thread-2] Parsing the tool configuration /tmp/tmpijf8h9m9/empty_tool_conf.xml galaxy.tool_util.toolbox.base DEBUG 2024-02-23 12:54:56,732 [pN:main.1,p:69789,tN:Thread-2] Tool path for tool configuration /tmp/tmpijf8h9m9/empty_tool_conf.xml is None galaxy.tool_util.toolbox.base DEBUG 2024-02-23 12:54:56,732 [pN:main.1,p:69789,tN:Thread-2] Reading tools from config files finished (2.314 ms) galaxy.tool_util.toolbox.base DEBUG 2024-02-23 12:54:56,732 [pN:main.1,p:69789,tN:Thread-2] Loaded tool id: upload1, version: 1.1.7 into tool panel.. galaxy.tool_util.toolbox.base DEBUG 2024-02-23 12:54:56,738 [pN:main.1,p:69789,tN:Thread-2] Loading tool panel finished (8.862 ms) galaxy.tool_util.toolbox.base DEBUG 2024-02-23 12:54:56,746 [pN:main.1,p:69789,tN:Thread-2] Loaded tool id: upload1, version: 1.1.7 into tool panel.. galaxy.tool_util.toolbox.views.edam DEBUG 2024-02-23 12:54:56,748 [pN:main.1,p:69789,tN:Thread-2] Loading EDAM tool panel finished (5.709 ms) galaxy.tool_util.toolbox.base DEBUG 2024-02-23 12:54:56,750 [pN:main.1,p:69789,tN:Thread-2] Loaded tool id: upload1, version: 1.1.7 into tool panel.. galaxy.tool_util.toolbox.views.edam DEBUG 2024-02-23 12:54:56,751 [pN:main.1,p:69789,tN:Thread-2] Loading EDAM tool panel finished (2.064 ms) galaxy.datatypes.registry DEBUG 2024-02-23 12:54:56,751 [pN:main.1,p:69789,tN:Thread-2] Loaded converter: CONVERTER_uncompressed_to_gz galaxy.datatypes.registry DEBUG 2024-02-23 12:54:56,751 [pN:main.1,p:69789,tN:Thread-2] Loaded converter: CONVERTER_gz_to_uncompressed galaxy.datatypes.registry DEBUG 2024-02-23 12:54:56,752 [pN:main.1,p:69789,tN:Thread-2] Loaded converter: CONVERTER_uncompressed_to_gz galaxy.datatypes.registry DEBUG 2024-02-23 12:54:56,753 [pN:main.1,p:69789,tN:Thread-2] Loaded converter: CONVERTER_gz_to_uncompressed galaxy.datatypes.registry DEBUG 2024-02-23 12:54:56,753 [pN:main.1,p:69789,tN:Thread-2] Loaded converter: CONVERTER_uncompressed_to_gz galaxy.datatypes.registry DEBUG 2024-02-23 12:54:56,754 [pN:main.1,p:69789,tN:Thread-2] Loaded converter: CONVERTER_gz_to_uncompressed galaxy.datatypes.registry DEBUG 2024-02-23 12:54:56,754 [pN:main.1,p:69789,tN:Thread-2] Loaded converter: CONVERTER_Bam_Bai_0 galaxy.datatypes.registry DEBUG 2024-02-23 12:54:56,755 [pN:main.1,p:69789,tN:Thread-2] Loaded converter: CONVERTER_bam_to_bigwig_0 galaxy.datatypes.registry DEBUG 2024-02-23 12:54:56,755 [pN:main.1,p:69789,tN:Thread-2] Loaded converter: CONVERTER_bam_to_qname_sorted_bam galaxy.datatypes.registry DEBUG 2024-02-23 12:54:56,755 [pN:main.1,p:69789,tN:Thread-2] Loaded converter: CONVERTER_bam_to_bigwig_0 galaxy.datatypes.registry DEBUG 2024-02-23 12:54:56,756 [pN:main.1,p:69789,tN:Thread-2] Loaded converter: CONVERTER_bam_to_coodinate_sorted_bam galaxy.datatypes.registry DEBUG 2024-02-23 12:54:56,756 [pN:main.1,p:69789,tN:Thread-2] Loaded converter: CONVERTER_bam_to_qname_sorted_bam galaxy.datatypes.registry DEBUG 2024-02-23 12:54:56,757 [pN:main.1,p:69789,tN:Thread-2] Loaded converter: CONVERTER_cram_to_bam_0 galaxy.datatypes.registry DEBUG 2024-02-23 12:54:56,757 [pN:main.1,p:69789,tN:Thread-2] Loaded converter: CONVERTER_bed_to_gff_0 galaxy.datatypes.registry DEBUG 2024-02-23 12:54:56,757 [pN:main.1,p:69789,tN:Thread-2] Loaded converter: CONVERTER_interval_to_bgzip_0 galaxy.datatypes.registry DEBUG 2024-02-23 12:54:56,757 [pN:main.1,p:69789,tN:Thread-2] Loaded converter: CONVERTER_interval_to_tabix_0 galaxy.model.database_heartbeat DEBUG 2024-02-23 12:54:56,758 [pN:main.1,p:69789,tN:database_heartbeart_main.1.thread] main.1 is config watcher galaxy.datatypes.registry DEBUG 2024-02-23 12:54:56,763 [pN:main.1,p:69789,tN:Thread-2] Loaded converter: CONVERTER_bed_gff_or_vcf_to_bigwig_0 galaxy.datatypes.registry DEBUG 2024-02-23 12:54:56,771 [pN:main.1,p:69789,tN:Thread-2] Loaded converter: CONVERTER_bed_to_fli_0 galaxy.datatypes.registry DEBUG 2024-02-23 12:54:56,771 [pN:main.1,p:69789,tN:Thread-2] Loaded converter: CONVERTER_bedgraph_to_bigwig galaxy.datatypes.registry DEBUG 2024-02-23 12:54:56,771 [pN:main.1,p:69789,tN:Thread-2] Loaded converter: CONVERTER_len_to_linecount galaxy.datatypes.registry DEBUG 2024-02-23 12:54:56,771 [pN:main.1,p:69789,tN:Thread-2] Loaded converter: CONVERTER_parquet_to_csv galaxy.datatypes.registry DEBUG 2024-02-23 12:54:56,774 [pN:main.1,p:69789,tN:Thread-2] Loaded converter: bigwigtowig galaxy.datatypes.registry DEBUG 2024-02-23 12:54:56,774 [pN:main.1,p:69789,tN:Thread-2] Loaded converter: CONVERTER_interval_to_bgzip_0 galaxy.datatypes.registry DEBUG 2024-02-23 12:54:56,775 [pN:main.1,p:69789,tN:Thread-2] Loaded converter: CONVERTER_interval_to_tabix_0 galaxy.datatypes.registry DEBUG 2024-02-23 12:54:56,775 [pN:main.1,p:69789,tN:Thread-2] Loaded converter: CONVERTER_bed_gff_or_vcf_to_bigwig_0 galaxy.datatypes.registry DEBUG 2024-02-23 12:54:56,775 [pN:main.1,p:69789,tN:Thread-2] Loaded converter: csv_to_tabular galaxy.datatypes.registry DEBUG 2024-02-23 12:54:56,776 [pN:main.1,p:69789,tN:Thread-2] Loaded converter: tabular_to_csv galaxy.datatypes.registry DEBUG 2024-02-23 12:54:56,776 [pN:main.1,p:69789,tN:Thread-2] Loaded converter: CONVERTER_fasta_to_tabular galaxy.datatypes.registry DEBUG 2024-02-23 12:54:56,777 [pN:main.1,p:69789,tN:Thread-2] Loaded converter: CONVERTER_fasta_to_bowtie_base_index galaxy.datatypes.registry DEBUG 2024-02-23 12:54:56,777 [pN:main.1,p:69789,tN:Thread-2] Loaded converter: CONVERTER_fasta_to_bowtie_color_index galaxy.datatypes.registry DEBUG 2024-02-23 12:54:56,782 [pN:main.1,p:69789,tN:Thread-2] Loaded converter: CONVERTER_fasta_to_2bit galaxy.datatypes.registry DEBUG 2024-02-23 12:54:56,783 [pN:main.1,p:69789,tN:Thread-2] Loaded converter: CONVERTER_fasta_to_len galaxy.datatypes.registry DEBUG 2024-02-23 12:54:56,783 [pN:main.1,p:69789,tN:Thread-2] Loaded converter: CONVERTER_fasta_to_fai galaxy.datatypes.registry DEBUG 2024-02-23 12:54:56,800 [pN:main.1,p:69789,tN:Thread-2] Loaded converter: CONVERTER_uncompressed_to_gz galaxy.datatypes.registry DEBUG 2024-02-23 12:54:56,806 [pN:main.1,p:69789,tN:Thread-2] Loaded converter: CONVERTER_gz_to_uncompressed galaxy.datatypes.registry DEBUG 2024-02-23 12:54:56,806 [pN:main.1,p:69789,tN:Thread-2] Loaded converter: CONVERTER_fastq_to_fqtoc0 galaxy.datatypes.registry DEBUG 2024-02-23 12:54:56,806 [pN:main.1,p:69789,tN:Thread-2] Loaded converter: CONVERTER_uncompressed_to_gz galaxy.datatypes.registry DEBUG 2024-02-23 12:54:56,807 [pN:main.1,p:69789,tN:Thread-2] Loaded converter: CONVERTER_gz_to_uncompressed galaxy.datatypes.registry DEBUG 2024-02-23 12:54:56,807 [pN:main.1,p:69789,tN:Thread-2] Loaded converter: CONVERTER_bz2_to_uncompressed galaxy.datatypes.registry DEBUG 2024-02-23 12:54:56,807 [pN:main.1,p:69789,tN:Thread-2] Loaded converter: CONVERTER_fastq_to_fqtoc0 galaxy.datatypes.registry DEBUG 2024-02-23 12:54:56,807 [pN:main.1,p:69789,tN:Thread-2] Loaded converter: CONVERTER_uncompressed_to_gz galaxy.datatypes.registry DEBUG 2024-02-23 12:54:56,807 [pN:main.1,p:69789,tN:Thread-2] Loaded converter: CONVERTER_gz_to_uncompressed galaxy.datatypes.registry DEBUG 2024-02-23 12:54:56,808 [pN:main.1,p:69789,tN:Thread-2] Loaded converter: CONVERTER_bz2_to_uncompressed galaxy.datatypes.registry DEBUG 2024-02-23 12:54:56,808 [pN:main.1,p:69789,tN:Thread-2] Loaded converter: CONVERTER_fastq_to_fqtoc0 galaxy.datatypes.registry DEBUG 2024-02-23 12:54:56,808 [pN:main.1,p:69789,tN:Thread-2] Loaded converter: CONVERTER_uncompressed_to_gz galaxy.datatypes.registry DEBUG 2024-02-23 12:54:56,809 [pN:main.1,p:69789,tN:Thread-2] Loaded converter: CONVERTER_gz_to_uncompressed galaxy.datatypes.registry DEBUG 2024-02-23 12:54:56,809 [pN:main.1,p:69789,tN:Thread-2] Loaded converter: CONVERTER_bz2_to_uncompressed galaxy.datatypes.registry DEBUG 2024-02-23 12:54:56,809 [pN:main.1,p:69789,tN:Thread-2] Loaded converter: CONVERTER_fastq_to_fqtoc0 galaxy.datatypes.registry DEBUG 2024-02-23 12:54:56,809 [pN:main.1,p:69789,tN:Thread-2] Loaded converter: CONVERTER_uncompressed_to_gz galaxy.datatypes.registry DEBUG 2024-02-23 12:54:56,810 [pN:main.1,p:69789,tN:Thread-2] Loaded converter: CONVERTER_gz_to_uncompressed galaxy.datatypes.registry DEBUG 2024-02-23 12:54:56,810 [pN:main.1,p:69789,tN:Thread-2] Loaded converter: CONVERTER_bz2_to_uncompressed galaxy.datatypes.registry DEBUG 2024-02-23 12:54:56,810 [pN:main.1,p:69789,tN:Thread-2] Loaded converter: CONVERTER_fastq_to_fqtoc0 galaxy.datatypes.registry DEBUG 2024-02-23 12:54:56,810 [pN:main.1,p:69789,tN:Thread-2] Loaded converter: CONVERTER_uncompressed_to_gz galaxy.datatypes.registry DEBUG 2024-02-23 12:54:56,811 [pN:main.1,p:69789,tN:Thread-2] Loaded converter: CONVERTER_gz_to_uncompressed galaxy.datatypes.registry DEBUG 2024-02-23 12:54:56,811 [pN:main.1,p:69789,tN:Thread-2] Loaded converter: CONVERTER_bz2_to_uncompressed galaxy.datatypes.registry DEBUG 2024-02-23 12:54:56,811 [pN:main.1,p:69789,tN:Thread-2] Loaded converter: CONVERTER_gff_to_bed_0 galaxy.datatypes.registry DEBUG 2024-02-23 12:54:56,812 [pN:main.1,p:69789,tN:Thread-2] Loaded converter: CONVERTER_gff_to_interval_index_0 galaxy.datatypes.registry DEBUG 2024-02-23 12:54:56,812 [pN:main.1,p:69789,tN:Thread-2] Loaded converter: CONVERTER_bed_gff_or_vcf_to_bigwig_0 galaxy.datatypes.registry DEBUG 2024-02-23 12:54:56,814 [pN:main.1,p:69789,tN:Thread-2] Loaded converter: CONVERTER_gff_to_fli_0 galaxy.datatypes.registry DEBUG 2024-02-23 12:54:56,814 [pN:main.1,p:69789,tN:Thread-2] Loaded converter: CONVERTER_interval_to_bgzip_0 galaxy.datatypes.registry DEBUG 2024-02-23 12:54:56,814 [pN:main.1,p:69789,tN:Thread-2] Loaded converter: CONVERTER_interval_to_tabix_0 galaxy.datatypes.registry DEBUG 2024-02-23 12:54:56,815 [pN:main.1,p:69789,tN:Thread-2] Loaded converter: CONVERTER_uncompressed_to_gz galaxy.datatypes.registry DEBUG 2024-02-23 12:54:56,815 [pN:main.1,p:69789,tN:Thread-2] Loaded converter: CONVERTER_gz_to_uncompressed galaxy.datatypes.registry DEBUG 2024-02-23 12:54:56,815 [pN:main.1,p:69789,tN:Thread-2] Loaded converter: CONVERTER_bz2_to_uncompressed galaxy.datatypes.registry DEBUG 2024-02-23 12:54:56,815 [pN:main.1,p:69789,tN:Thread-2] Loaded converter: CONVERTER_gff_to_interval_index_0 galaxy.datatypes.registry DEBUG 2024-02-23 12:54:56,816 [pN:main.1,p:69789,tN:Thread-2] Loaded converter: CONVERTER_bed_gff_or_vcf_to_bigwig_0 galaxy.datatypes.registry DEBUG 2024-02-23 12:54:56,816 [pN:main.1,p:69789,tN:Thread-2] Loaded converter: CONVERTER_interval_to_bed_0 galaxy.datatypes.registry DEBUG 2024-02-23 12:54:56,816 [pN:main.1,p:69789,tN:Thread-2] Loaded converter: CONVERTER_interval_to_bedstrict_0 galaxy.datatypes.registry DEBUG 2024-02-23 12:54:56,816 [pN:main.1,p:69789,tN:Thread-2] Loaded converter: CONVERTER_interval_to_bed6_0 galaxy.datatypes.registry DEBUG 2024-02-23 12:54:56,816 [pN:main.1,p:69789,tN:Thread-2] Loaded converter: CONVERTER_interval_to_bed12_0 galaxy.datatypes.registry DEBUG 2024-02-23 12:54:56,816 [pN:main.1,p:69789,tN:Thread-2] Loaded converter: CONVERTER_interval_to_bgzip_0 galaxy.datatypes.registry DEBUG 2024-02-23 12:54:56,817 [pN:main.1,p:69789,tN:Thread-2] Loaded converter: CONVERTER_interval_to_tabix_0 galaxy.datatypes.registry DEBUG 2024-02-23 12:54:56,817 [pN:main.1,p:69789,tN:Thread-2] Loaded converter: CONVERTER_interval_to_bigwig_0 galaxy.datatypes.registry DEBUG 2024-02-23 12:54:56,817 [pN:main.1,p:69789,tN:Thread-2] Loaded converter: CONVERTER_picard_interval_list_to_bed6 galaxy.datatypes.registry DEBUG 2024-02-23 12:54:56,817 [pN:main.1,p:69789,tN:Thread-2] Loaded converter: CONVERTER_tar_to_directory galaxy.datatypes.registry DEBUG 2024-02-23 12:54:56,817 [pN:main.1,p:69789,tN:Thread-2] Loaded converter: CONVERTER_uncompressed_to_gz galaxy.datatypes.registry DEBUG 2024-02-23 12:54:56,817 [pN:main.1,p:69789,tN:Thread-2] Loaded converter: CONVERTER_gz_to_uncompressed galaxy.datatypes.registry DEBUG 2024-02-23 12:54:56,817 [pN:main.1,p:69789,tN:Thread-2] Loaded converter: CONVERTER_uncompressed_to_gz galaxy.datatypes.registry DEBUG 2024-02-23 12:54:56,817 [pN:main.1,p:69789,tN:Thread-2] Loaded converter: CONVERTER_gz_to_uncompressed galaxy.datatypes.registry DEBUG 2024-02-23 12:54:56,817 [pN:main.1,p:69789,tN:Thread-2] Loaded converter: CONVERTER_uncompressed_to_gz galaxy.datatypes.registry DEBUG 2024-02-23 12:54:56,818 [pN:main.1,p:69789,tN:Thread-2] Loaded converter: CONVERTER_gz_to_uncompressed galaxy.datatypes.registry DEBUG 2024-02-23 12:54:56,818 [pN:main.1,p:69789,tN:Thread-2] Loaded converter: CONVERTER_maf_to_fasta_0 galaxy.datatypes.registry DEBUG 2024-02-23 12:54:56,818 [pN:main.1,p:69789,tN:Thread-2] Loaded converter: CONVERTER_maf_to_interval_0 galaxy.datatypes.registry DEBUG 2024-02-23 12:54:56,818 [pN:main.1,p:69789,tN:Thread-2] Loaded converter: CONVERTER_interval_to_tabix_0 galaxy.datatypes.registry DEBUG 2024-02-23 12:54:56,818 [pN:main.1,p:69789,tN:Thread-2] Loaded converter: CONVERTER_interval_to_bgzip_0 galaxy.datatypes.registry DEBUG 2024-02-23 12:54:56,818 [pN:main.1,p:69789,tN:Thread-2] Loaded converter: CONVERTER_bed_gff_or_vcf_to_bigwig_0 galaxy.datatypes.registry DEBUG 2024-02-23 12:54:56,818 [pN:main.1,p:69789,tN:Thread-2] Loaded converter: CONVERTER_interval_to_bgzip_0 galaxy.datatypes.registry DEBUG 2024-02-23 12:54:56,818 [pN:main.1,p:69789,tN:Thread-2] Loaded converter: CONVERTER_interval_to_tabix_0 galaxy.datatypes.registry DEBUG 2024-02-23 12:54:56,818 [pN:main.1,p:69789,tN:Thread-2] Loaded converter: CONVERTER_sam_to_unsorted_bam galaxy.datatypes.registry DEBUG 2024-02-23 12:54:56,818 [pN:main.1,p:69789,tN:Thread-2] Loaded converter: CONVERTER_bam_to_coodinate_sorted_bam galaxy.datatypes.registry DEBUG 2024-02-23 12:54:56,819 [pN:main.1,p:69789,tN:Thread-2] Loaded converter: CONVERTER_bam_to_qname_sorted_bam galaxy.datatypes.registry DEBUG 2024-02-23 12:54:56,819 [pN:main.1,p:69789,tN:Thread-2] Loaded converter: CONVERTER_sam_to_bigwig_0 galaxy.datatypes.registry DEBUG 2024-02-23 12:54:56,819 [pN:main.1,p:69789,tN:Thread-2] Loaded converter: tabular_to_dbnsfp galaxy.datatypes.registry DEBUG 2024-02-23 12:54:56,819 [pN:main.1,p:69789,tN:Thread-2] Loaded converter: tabular_to_csv galaxy.datatypes.registry DEBUG 2024-02-23 12:54:56,819 [pN:main.1,p:69789,tN:Thread-2] Loaded converter: CONVERTER_uncompressed_to_gz galaxy.datatypes.registry DEBUG 2024-02-23 12:54:56,819 [pN:main.1,p:69789,tN:Thread-2] Loaded converter: CONVERTER_gz_to_uncompressed galaxy.datatypes.registry DEBUG 2024-02-23 12:54:56,819 [pN:main.1,p:69789,tN:Thread-2] Loaded converter: CONVERTER_interval_to_bgzip_0 galaxy.datatypes.registry DEBUG 2024-02-23 12:54:56,819 [pN:main.1,p:69789,tN:Thread-2] Loaded converter: CONVERTER_vcf_to_vcf_bgzip_0 galaxy.datatypes.registry DEBUG 2024-02-23 12:54:56,819 [pN:main.1,p:69789,tN:Thread-2] Loaded converter: CONVERTER_interval_to_tabix_0 galaxy.datatypes.registry DEBUG 2024-02-23 12:54:56,819 [pN:main.1,p:69789,tN:Thread-2] Loaded converter: CONVERTER_bed_gff_or_vcf_to_bigwig_0 galaxy.datatypes.registry DEBUG 2024-02-23 12:54:56,820 [pN:main.1,p:69789,tN:Thread-2] Loaded converter: CONVERTER_uncompressed_to_gz galaxy.datatypes.registry DEBUG 2024-02-23 12:54:56,820 [pN:main.1,p:69789,tN:Thread-2] Loaded converter: CONVERTER_bcf_uncompressed_to_bcf galaxy.datatypes.registry DEBUG 2024-02-23 12:54:56,820 [pN:main.1,p:69789,tN:Thread-2] Loaded converter: CONVERTER_bcf_uncompressed_to_bcf galaxy.datatypes.registry DEBUG 2024-02-23 12:54:56,820 [pN:main.1,p:69789,tN:Thread-2] Loaded converter: CONVERTER_wig_to_bigwig galaxy.datatypes.registry DEBUG 2024-02-23 12:54:56,820 [pN:main.1,p:69789,tN:Thread-2] Loaded converter: CONVERTER_wiggle_to_interval_0 galaxy.datatypes.registry DEBUG 2024-02-23 12:54:56,820 [pN:main.1,p:69789,tN:Thread-2] Loaded converter: CONVERTER_vcf_bgzip_to_tabix_0 galaxy.datatypes.registry DEBUG 2024-02-23 12:54:56,820 [pN:main.1,p:69789,tN:Thread-2] Loaded converter: CONVERTER_gz_to_uncompressed galaxy.datatypes.registry DEBUG 2024-02-23 12:54:56,820 [pN:main.1,p:69789,tN:Thread-2] Loaded converter: lped2fpedconvert galaxy.datatypes.registry DEBUG 2024-02-23 12:54:56,820 [pN:main.1,p:69789,tN:Thread-2] Loaded converter: lped2pbedconvert galaxy.datatypes.registry DEBUG 2024-02-23 12:54:56,821 [pN:main.1,p:69789,tN:Thread-2] Loaded converter: pbed2lpedconvert galaxy.datatypes.registry DEBUG 2024-02-23 12:54:56,821 [pN:main.1,p:69789,tN:Thread-2] Loaded converter: pbed2ldindepconvert galaxy.datatypes.registry DEBUG 2024-02-23 12:54:56,821 [pN:main.1,p:69789,tN:Thread-2] Loaded converter: CONVERTER_uncompressed_to_gz galaxy.datatypes.registry DEBUG 2024-02-23 12:54:56,821 [pN:main.1,p:69789,tN:Thread-2] Loaded converter: CONVERTER_gz_to_uncompressed galaxy.datatypes.registry DEBUG 2024-02-23 12:54:56,821 [pN:main.1,p:69789,tN:Thread-2] Loaded converter: CONVERTER_biom galaxy.datatypes.registry DEBUG 2024-02-23 12:54:56,821 [pN:main.1,p:69789,tN:Thread-2] Loaded converter: CONVERTER_biom galaxy.datatypes.registry DEBUG 2024-02-23 12:54:56,822 [pN:main.1,p:69789,tN:Thread-2] Loaded converter: CONVERTER_molecules galaxy.datatypes.registry DEBUG 2024-02-23 12:54:56,822 [pN:main.1,p:69789,tN:Thread-2] Loaded converter: CONVERTER_molecules galaxy.datatypes.registry DEBUG 2024-02-23 12:54:56,822 [pN:main.1,p:69789,tN:Thread-2] Loaded converter: CONVERTER_molecules galaxy.datatypes.registry DEBUG 2024-02-23 12:54:56,822 [pN:main.1,p:69789,tN:Thread-2] Loaded converter: CONVERTER_SMILES_to_MOL galaxy.datatypes.registry DEBUG 2024-02-23 12:54:56,822 [pN:main.1,p:69789,tN:Thread-2] Loaded converter: CONVERTER_molecules galaxy.datatypes.registry DEBUG 2024-02-23 12:54:56,822 [pN:main.1,p:69789,tN:Thread-2] Loaded converter: CONVERTER_smiles_to_smiles galaxy.datatypes.registry DEBUG 2024-02-23 12:54:56,822 [pN:main.1,p:69789,tN:Thread-2] Loaded converter: CONVERTER_molecules galaxy.datatypes.registry DEBUG 2024-02-23 12:54:56,822 [pN:main.1,p:69789,tN:Thread-2] Loaded converter: CONVERTER_molecules galaxy.datatypes.registry DEBUG 2024-02-23 12:54:56,823 [pN:main.1,p:69789,tN:Thread-2] Loaded converter: CONVERTER_molecules galaxy.datatypes.registry DEBUG 2024-02-23 12:54:56,823 [pN:main.1,p:69789,tN:Thread-2] Loaded converter: CONVERTER_molecules galaxy.datatypes.registry DEBUG 2024-02-23 12:54:56,823 [pN:main.1,p:69789,tN:Thread-2] Loaded converter: CONVERTER_molecules galaxy.datatypes.registry DEBUG 2024-02-23 12:54:56,823 [pN:main.1,p:69789,tN:Thread-2] Loaded converter: CONVERTER_molecules galaxy.datatypes.registry DEBUG 2024-02-23 12:54:56,823 [pN:main.1,p:69789,tN:Thread-2] Loaded converter: CONVERTER_inchi_to_mol galaxy.datatypes.registry DEBUG 2024-02-23 12:54:56,823 [pN:main.1,p:69789,tN:Thread-2] Loaded converter: CONVERTER_molecules galaxy.datatypes.registry DEBUG 2024-02-23 12:54:56,823 [pN:main.1,p:69789,tN:Thread-2] Loaded converter: CONVERTER_molecules galaxy.datatypes.registry DEBUG 2024-02-23 12:54:56,823 [pN:main.1,p:69789,tN:Thread-2] Loaded converter: CONVERTER_molecules galaxy.datatypes.registry DEBUG 2024-02-23 12:54:56,823 [pN:main.1,p:69789,tN:Thread-2] Loaded converter: CONVERTER_molecules galaxy.datatypes.registry DEBUG 2024-02-23 12:54:56,824 [pN:main.1,p:69789,tN:Thread-2] Loaded converter: CONVERTER_molecules galaxy.datatypes.registry DEBUG 2024-02-23 12:54:56,824 [pN:main.1,p:69789,tN:Thread-2] Loaded converter: CONVERTER_molecules galaxy.datatypes.registry DEBUG 2024-02-23 12:54:56,824 [pN:main.1,p:69789,tN:Thread-2] Loaded converter: CONVERTER_molecules galaxy.datatypes.registry DEBUG 2024-02-23 12:54:56,824 [pN:main.1,p:69789,tN:Thread-2] Loaded converter: CONVERTER_molecules galaxy.datatypes.registry DEBUG 2024-02-23 12:54:56,824 [pN:main.1,p:69789,tN:Thread-2] Loaded converter: CONVERTER_molecules galaxy.datatypes.registry DEBUG 2024-02-23 12:54:56,824 [pN:main.1,p:69789,tN:Thread-2] Loaded converter: CONVERTER_molecules galaxy.datatypes.registry DEBUG 2024-02-23 12:54:56,825 [pN:main.1,p:69789,tN:Thread-2] Loaded converter: CONVERTER_mol2_to_mol galaxy.datatypes.registry DEBUG 2024-02-23 12:54:56,825 [pN:main.1,p:69789,tN:Thread-2] Loaded converter: CONVERTER_molecules galaxy.datatypes.registry DEBUG 2024-02-23 12:54:56,825 [pN:main.1,p:69789,tN:Thread-2] Loaded converter: CONVERTER_cml_to_smiles galaxy.datatypes.registry DEBUG 2024-02-23 12:54:56,825 [pN:main.1,p:69789,tN:Thread-2] Loaded converter: CONVERTER_molecules galaxy.datatypes.registry DEBUG 2024-02-23 12:54:56,825 [pN:main.1,p:69789,tN:Thread-2] Loaded converter: CONVERTER_molecules galaxy.datatypes.registry DEBUG 2024-02-23 12:54:56,825 [pN:main.1,p:69789,tN:Thread-2] Loaded converter: CONVERTER_molecules galaxy.datatypes.registry DEBUG 2024-02-23 12:54:56,825 [pN:main.1,p:69789,tN:Thread-2] Loaded converter: CONVERTER_Pdb_to_Gro_0 galaxy.datatypes.registry DEBUG 2024-02-23 12:54:56,825 [pN:main.1,p:69789,tN:Thread-2] Loaded converter: CONVERTER_mdconvert galaxy.datatypes.registry DEBUG 2024-02-23 12:54:56,826 [pN:main.1,p:69789,tN:Thread-2] Loaded converter: CONVERTER_mdconvert galaxy.datatypes.registry DEBUG 2024-02-23 12:54:56,826 [pN:main.1,p:69789,tN:Thread-2] Loaded converter: CONVERTER_mdconvert galaxy.datatypes.registry DEBUG 2024-02-23 12:54:56,826 [pN:main.1,p:69789,tN:Thread-2] Loaded converter: CONVERTER_mdconvert galaxy.datatypes.registry DEBUG 2024-02-23 12:54:56,826 [pN:main.1,p:69789,tN:Thread-2] Loaded converter: CONVERTER_mdconvert galaxy.datatypes.registry DEBUG 2024-02-23 12:54:56,826 [pN:main.1,p:69789,tN:Thread-2] Loaded converter: CONVERTER_mdconvert galaxy.datatypes.registry DEBUG 2024-02-23 12:54:56,826 [pN:main.1,p:69789,tN:Thread-2] Loaded converter: CONVERTER_Gro_to_Pdb_0 galaxy.datatypes.registry DEBUG 2024-02-23 12:54:56,826 [pN:main.1,p:69789,tN:Thread-2] Loaded converter: CONVERTER_ref_to_seq_taxomony galaxy.datatypes.registry DEBUG 2024-02-23 12:54:56,826 [pN:main.1,p:69789,tN:Thread-2] Loaded converter: CONVERTER_neostorezip_to_neostore galaxy.datatypes.registry DEBUG 2024-02-23 12:54:56,829 [pN:main.1,p:69789,tN:Thread-2] Loaded external metadata tool: __SET_METADATA__ galaxy.tools.special_tools DEBUG 2024-02-23 12:54:56,838 [pN:main.1,p:69789,tN:Thread-2] Loaded history export tool: __EXPORT_HISTORY__ galaxy.tools.special_tools DEBUG 2024-02-23 12:54:56,847 [pN:main.1,p:69789,tN:Thread-2] Loaded history export to uri tool: __EXPORT_HISTORY_TO_URI__ galaxy.tools.special_tools DEBUG 2024-02-23 12:54:56,850 [pN:main.1,p:69789,tN:Thread-2] Loaded history import tool: __IMPORT_HISTORY__ galaxy.tools.special_tools DEBUG 2024-02-23 12:54:56,853 [pN:main.1,p:69789,tN:Thread-2] Loaded data fetch tool: __DATA_FETCH__ galaxy.queue_worker INFO 2024-02-23 12:54:56,853 [pN:main.1,p:69789,tN:Thread-2] Queuing async task rebuild_toolbox_search_index for main.1. galaxy.queue_worker DEBUG 2024-02-23 12:54:56,870 [pN:main.1,p:69789,tN:Thread-2] Toolbox reload (180.501 ms) galaxy.queue_worker INFO 2024-02-23 12:54:56,870 [pN:main.1,p:69789,tN:Thread-2] Queuing async task rebuild_toolbox_search_index for main.1. galaxy.web_stack INFO 2024-02-23 12:54:56,878 [pN:main.1,p:69789,tN:Thread-2] Galaxy server instance 'main.1' is running [92m Serving on http://127.0.0.1:56751 [0m multipart.multipart DEBUG 2024-02-23 12:54:57,422 [pN:main.1,p:69789,tN:MainThread] Calling on_field_start with no data multipart.multipart DEBUG 2024-02-23 12:54:57,423 [pN:main.1,p:69789,tN:MainThread] Calling on_field_name with data[0:4] multipart.multipart DEBUG 2024-02-23 12:54:57,423 [pN:main.1,p:69789,tN:MainThread] Calling on_field_data with data[5:63] multipart.multipart DEBUG 2024-02-23 12:54:57,423 [pN:main.1,p:69789,tN:MainThread] Calling on_field_end with no data multipart.multipart DEBUG 2024-02-23 12:54:57,423 [pN:main.1,p:69789,tN:MainThread] Calling on_end with no data galaxy.tools INFO 2024-02-23 12:54:57,592 [pN:main.1,p:69789,tN:WSGI_2] Validated and populated state for tool request (11.644 ms) galaxy.tools.actions.upload DEBUG 2024-02-23 12:54:57,598 [pN:main.1,p:69789,tN:WSGI_2] Persisted uploads (0.132 ms) galaxy.tools.actions.upload DEBUG 2024-02-23 12:54:57,655 [pN:main.1,p:69789,tN:WSGI_2] Checked uploads (57.132 ms) galaxy.tools.actions.upload DEBUG 2024-02-23 12:54:57,658 [pN:main.1,p:69789,tN:WSGI_2] Created upload job (2.668 ms) galaxy.tools.execute DEBUG 2024-02-23 12:54:57,658 [pN:main.1,p:69789,tN:WSGI_2] Tool upload1 created job None (60.490 ms) galaxy.web_stack.handlers INFO 2024-02-23 12:54:57,677 [pN:main.1,p:69789,tN:WSGI_2] (Job[id=1,tool_id=upload1]) Handler '_default_' assigned using 'HANDLER_ASSIGNMENT_METHODS.DB_SKIP_LOCKED' assignment method galaxy.tools.execute DEBUG 2024-02-23 12:54:57,681 [pN:main.1,p:69789,tN:WSGI_2] Created 1 job(s) for tool upload1 request (88.980 ms) galaxy.jobs.mapper DEBUG 2024-02-23 12:54:57,836 [pN:main.1,p:69789,tN:JobHandlerQueue.monitor_thread] (1) Mapped job to destination id: docker_local galaxy.jobs.handler DEBUG 2024-02-23 12:54:57,841 [pN:main.1,p:69789,tN:JobHandlerQueue.monitor_thread] (1) Dispatching to local runner galaxy.jobs DEBUG 2024-02-23 12:54:57,851 [pN:main.1,p:69789,tN:JobHandlerQueue.monitor_thread] (1) Persisting job destination (destination id: docker_local) galaxy.jobs DEBUG 2024-02-23 12:54:57,862 [pN:main.1,p:69789,tN:JobHandlerQueue.monitor_thread] (1) Working directory for job is: /tmp/tmpijf8h9m9/job_working_directory/000/1 galaxy.jobs.runners DEBUG 2024-02-23 12:54:57,879 [pN:main.1,p:69789,tN:JobHandlerQueue.monitor_thread] Job [1] queued (37.923 ms) galaxy.jobs.handler INFO 2024-02-23 12:54:57,907 [pN:main.1,p:69789,tN:JobHandlerQueue.monitor_thread] (1) Job dispatched galaxy.queue_worker INFO 2024-02-23 12:54:57,910 [pN:main.1,p:69789,tN:Thread-1] Instance 'main.1' received 'rebuild_toolbox_search_index' task, executing now. galaxy.tools.search DEBUG 2024-02-23 12:54:57,910 [pN:main.1,p:69789,tN:Thread-1] Starting to build toolbox index of panel default. galaxy.tools.search DEBUG 2024-02-23 12:54:57,949 [pN:main.1,p:69789,tN:Thread-1] Toolbox index of panel default finished (38.922 ms) galaxy.tools.search DEBUG 2024-02-23 12:54:57,950 [pN:main.1,p:69789,tN:Thread-1] Starting to build toolbox index of panel ontology:edam_operations. galaxy.tools.search DEBUG 2024-02-23 12:54:57,982 [pN:main.1,p:69789,tN:Thread-1] Toolbox index of panel ontology:edam_operations finished (32.299 ms) galaxy.tools.search DEBUG 2024-02-23 12:54:57,983 [pN:main.1,p:69789,tN:Thread-1] Starting to build toolbox index of panel ontology:edam_topics. galaxy.tools.search DEBUG 2024-02-23 12:54:58,031 [pN:main.1,p:69789,tN:Thread-1] Toolbox index of panel ontology:edam_topics finished (48.427 ms) galaxy.queue_worker INFO 2024-02-23 12:54:58,052 [pN:main.1,p:69789,tN:Thread-1] Instance 'main.1' received 'rebuild_toolbox_search_index' task, executing now. galaxy.tools.search DEBUG 2024-02-23 12:54:58,052 [pN:main.1,p:69789,tN:Thread-1] Starting to build toolbox index of panel default. galaxy.tools.search DEBUG 2024-02-23 12:54:58,064 [pN:main.1,p:69789,tN:Thread-1] Toolbox index of panel default finished (11.728 ms) galaxy.tools.search DEBUG 2024-02-23 12:54:58,064 [pN:main.1,p:69789,tN:Thread-1] Starting to build toolbox index of panel ontology:edam_operations. galaxy.tools.search DEBUG 2024-02-23 12:54:58,081 [pN:main.1,p:69789,tN:Thread-1] Toolbox index of panel ontology:edam_operations finished (14.751 ms) galaxy.tools.search DEBUG 2024-02-23 12:54:58,081 [pN:main.1,p:69789,tN:Thread-1] Starting to build toolbox index of panel ontology:edam_topics. galaxy.tools.search DEBUG 2024-02-23 12:54:58,112 [pN:main.1,p:69789,tN:Thread-1] Toolbox index of panel ontology:edam_topics finished (30.864 ms) galaxy.jobs DEBUG 2024-02-23 12:54:58,142 [pN:main.1,p:69789,tN:LocalRunner.work_thread-0] Job wrapper for Job [1] prepared (216.610 ms) galaxy.tool_util.deps.containers INFO 2024-02-23 12:54:58,144 [pN:main.1,p:69789,tN:LocalRunner.work_thread-0] Checking with container resolver [ExplicitContainerResolver[]] found description [None] galaxy.tool_util.deps.containers INFO 2024-02-23 12:54:58,144 [pN:main.1,p:69789,tN:LocalRunner.work_thread-0] Checking with container resolver [CachedMulledDockerContainerResolver[namespace=biocontainers]] found description [None] galaxy.tool_util.deps.containers INFO 2024-02-23 12:54:58,144 [pN:main.1,p:69789,tN:LocalRunner.work_thread-0] Checking with container resolver [CachedMulledDockerContainerResolver[namespace=local]] found description [None] galaxy.tool_util.deps.containers INFO 2024-02-23 12:54:58,144 [pN:main.1,p:69789,tN:LocalRunner.work_thread-0] Checking with container resolver [MulledDockerContainerResolver[namespace=biocontainers]] found description [None] galaxy.tool_util.deps.containers INFO 2024-02-23 12:54:58,144 [pN:main.1,p:69789,tN:LocalRunner.work_thread-0] Checking with container resolver [BuildDockerContainerResolver[namespace=local]] found description [None] galaxy.jobs.command_factory INFO 2024-02-23 12:54:58,171 [pN:main.1,p:69789,tN:LocalRunner.work_thread-0] Built script [/tmp/tmpijf8h9m9/job_working_directory/000/1/tool_script.sh] for tool command [python '/scratch/rico/galaxy/tools/data_source/upload.py' '/scratch/rico/galaxy' '/tmp/tmpijf8h9m9/job_working_directory/000/1/registry.xml' '/tmp/tmpijf8h9m9/job_working_directory/000/1/upload_params.json' '1:/tmp/tmpijf8h9m9/job_working_directory/000/1/outputs/dataset_d0b955f0-4f06-4a8e-ba48-d46c4920754d_files:/tmp/tmpijf8h9m9/job_working_directory/000/1/outputs/dataset_d0b955f0-4f06-4a8e-ba48-d46c4920754d.dat'] galaxy.jobs.runners DEBUG 2024-02-23 12:54:58,220 [pN:main.1,p:69789,tN:LocalRunner.work_thread-0] (1) command is: mkdir -p working outputs configs if [ -d _working ]; then rm -rf working/ outputs/ configs/; cp -R _working working; cp -R _outputs outputs; cp -R _configs configs else cp -R working _working; cp -R outputs _outputs; cp -R configs _configs fi cd working; /bin/bash /tmp/tmpijf8h9m9/job_working_directory/000/1/tool_script.sh > '../outputs/tool_stdout' 2> '../outputs/tool_stderr'; return_code=$?; echo $return_code > /tmp/tmpijf8h9m9/job_working_directory/000/1/galaxy_1.ec; cd '/tmp/tmpijf8h9m9/job_working_directory/000/1'; [ "$GALAXY_VIRTUAL_ENV" = "None" ] && GALAXY_VIRTUAL_ENV="$_GALAXY_VIRTUAL_ENV"; _galaxy_setup_environment True; python metadata/set.py; sh -c "exit $return_code" galaxy.jobs.runners.local DEBUG 2024-02-23 12:54:58,243 [pN:main.1,p:69789,tN:LocalRunner.work_thread-0] (1) executing job script: /tmp/tmpijf8h9m9/job_working_directory/000/1/galaxy_1.sh galaxy.jobs.runners.util.process_groups DEBUG 2024-02-23 12:55:04,493 [pN:main.1,p:69789,tN:LocalRunner.work_thread-0] check_pg(): No process found in process group 69816 galaxy.jobs.runners.local DEBUG 2024-02-23 12:55:04,494 [pN:main.1,p:69789,tN:LocalRunner.work_thread-0] execution finished: /tmp/tmpijf8h9m9/job_working_directory/000/1/galaxy_1.sh galaxy.jobs DEBUG 2024-02-23 12:55:04,519 [pN:main.1,p:69789,tN:LocalRunner.work_thread-0] finish(): Moved /tmp/tmpijf8h9m9/job_working_directory/000/1/outputs/dataset_d0b955f0-4f06-4a8e-ba48-d46c4920754d.dat to /tmp/tmpijf8h9m9/files/d/0/b/dataset_d0b955f0-4f06-4a8e-ba48-d46c4920754d.dat galaxy.model.metadata DEBUG 2024-02-23 12:55:04,528 [pN:main.1,p:69789,tN:LocalRunner.work_thread-0] loading metadata from file for: HistoryDatasetAssociation 1 galaxy.jobs DEBUG 2024-02-23 12:55:04,560 [pN:main.1,p:69789,tN:LocalRunner.work_thread-0] job_wrapper.finish for job 1 executed (47.817 ms) galaxy.tools INFO 2024-02-23 12:55:04,667 [pN:main.1,p:69789,tN:WSGI_0] Validated and populated state for tool request (12.618 ms) galaxy.tools.actions INFO 2024-02-23 12:55:04,674 [pN:main.1,p:69789,tN:WSGI_0] Handled output named adaptor_report for tool ncbi_fcs_adaptor (3.398 ms) galaxy.tools.actions INFO 2024-02-23 12:55:04,676 [pN:main.1,p:69789,tN:WSGI_0] Handled output named clean_fasta for tool ncbi_fcs_adaptor (2.407 ms) galaxy.tools.actions INFO 2024-02-23 12:55:04,683 [pN:main.1,p:69789,tN:WSGI_0] Added output datasets to history (7.322 ms) galaxy.tools.actions INFO 2024-02-23 12:55:04,685 [pN:main.1,p:69789,tN:WSGI_0] Setup for job Job[unflushed,tool_id=ncbi_fcs_adaptor] complete, ready to be enqueued (1.414 ms) galaxy.tools.execute DEBUG 2024-02-23 12:55:04,685 [pN:main.1,p:69789,tN:WSGI_0] Tool ncbi_fcs_adaptor created job None (16.695 ms) galaxy.web_stack.handlers INFO 2024-02-23 12:55:04,708 [pN:main.1,p:69789,tN:WSGI_0] (Job[id=2,tool_id=ncbi_fcs_adaptor]) Handler '_default_' assigned using 'HANDLER_ASSIGNMENT_METHODS.DB_SKIP_LOCKED' assignment method galaxy.tools.execute DEBUG 2024-02-23 12:55:04,712 [pN:main.1,p:69789,tN:WSGI_0] Created 1 job(s) for tool ncbi_fcs_adaptor request (45.057 ms) galaxy.jobs.mapper DEBUG 2024-02-23 12:55:05,068 [pN:main.1,p:69789,tN:JobHandlerQueue.monitor_thread] (2) Mapped job to destination id: docker_local galaxy.jobs.handler DEBUG 2024-02-23 12:55:05,071 [pN:main.1,p:69789,tN:JobHandlerQueue.monitor_thread] (2) Dispatching to local runner galaxy.jobs DEBUG 2024-02-23 12:55:05,077 [pN:main.1,p:69789,tN:JobHandlerQueue.monitor_thread] (2) Persisting job destination (destination id: docker_local) galaxy.jobs DEBUG 2024-02-23 12:55:05,082 [pN:main.1,p:69789,tN:JobHandlerQueue.monitor_thread] (2) Working directory for job is: /tmp/tmpijf8h9m9/job_working_directory/000/2 galaxy.jobs.runners DEBUG 2024-02-23 12:55:05,089 [pN:main.1,p:69789,tN:JobHandlerQueue.monitor_thread] Job [2] queued (17.269 ms) galaxy.jobs.handler INFO 2024-02-23 12:55:05,099 [pN:main.1,p:69789,tN:JobHandlerQueue.monitor_thread] (2) Job dispatched galaxy.security.object_wrapper WARNING 2024-02-23 12:55:05,138 [pN:main.1,p:69789,tN:LocalRunner.work_thread-0] Unable to create dynamic subclass SafeStringWrapper__galaxy.model.none_like.None__NoneType__NotImplementedType__Number__SafeStringWrapper__ToolParameterValueWrapper__bool__bytearray__ellipsis for <class 'galaxy.model.none_like.NoneDataset'>, None: type() doesn't support MRO entry resolution; use types.new_class() galaxy.jobs DEBUG 2024-02-23 12:55:05,150 [pN:main.1,p:69789,tN:LocalRunner.work_thread-0] Job wrapper for Job [2] prepared (41.660 ms) galaxy.tool_util.deps.containers INFO 2024-02-23 12:55:05,151 [pN:main.1,p:69789,tN:LocalRunner.work_thread-0] Checking with container resolver [ExplicitContainerResolver[]] found description [ContainerDescription[identifier=ncbi/fcs-adaptor:0.5.0,type=docker]] galaxy.jobs.command_factory INFO 2024-02-23 12:55:05,194 [pN:main.1,p:69789,tN:LocalRunner.work_thread-0] Built script [/tmp/tmpijf8h9m9/job_working_directory/000/2/tool_script.sh] for tool command [/app/fcs/bin/av_screen_x -o "$(pwd)" '--prok' '/tmp/tmpijf8h9m9/files/d/0/b/dataset_d0b955f0-4f06-4a8e-ba48-d46c4920754d.dat'] galaxy.jobs.runners DEBUG 2024-02-23 12:55:05,228 [pN:main.1,p:69789,tN:LocalRunner.work_thread-0] (2) command is: mkdir -p working outputs configs if [ -d _working ]; then rm -rf working/ outputs/ configs/; cp -R _working working; cp -R _outputs outputs; cp -R _configs configs else cp -R working _working; cp -R outputs _outputs; cp -R configs _configs fi cd working; _on_exit() { docker kill 9fa5055ffdcf4558ac0907bc0f402bd6 &> /dev/null } trap _on_exit EXIT docker inspect ncbi/fcs-adaptor:0.5.0 > /dev/null 2>&1 [ $? -ne 0 ] && docker pull ncbi/fcs-adaptor:0.5.0 > /dev/null 2>&1 docker run -e "GALAXY_SLOTS=$GALAXY_SLOTS" -e "GALAXY_MEMORY_MB=$GALAXY_MEMORY_MB" -e "GALAXY_MEMORY_MB_PER_SLOT=$GALAXY_MEMORY_MB_PER_SLOT" -e "HOME=$HOME" -e "_GALAXY_JOB_HOME_DIR=$_GALAXY_JOB_HOME_DIR" -e "_GALAXY_JOB_TMP_DIR=$_GALAXY_JOB_TMP_DIR" -e "TMPDIR=$TMPDIR" -e "TMP=$TMP" -e "TEMP=$TEMP" --name 9fa5055ffdcf4558ac0907bc0f402bd6 -v "$_GALAXY_JOB_TMP_DIR:$_GALAXY_JOB_TMP_DIR:rw" -v "$TMPDIR:$TMPDIR:rw" -v "$TMP:$TMP:rw" -v "$TEMP:$TEMP:rw" -v /scratch/rico/galaxy:/scratch/rico/galaxy:ro -v /scratch/rico/galaxytools/tools/ncbi_fcs_adaptor:/scratch/rico/galaxytools/tools/ncbi_fcs_adaptor:ro -v /tmp/tmpijf8h9m9/job_working_directory/000/2:/tmp/tmpijf8h9m9/job_working_directory/000/2:ro -v /tmp/tmpijf8h9m9/job_working_directory/000/2/outputs:/tmp/tmpijf8h9m9/job_working_directory/000/2/outputs:rw -v "$_GALAXY_JOB_HOME_DIR:$_GALAXY_JOB_HOME_DIR:rw" -v /tmp/tmpijf8h9m9/job_working_directory/000/2/working:/tmp/tmpijf8h9m9/job_working_directory/000/2/working:rw -v /tmp/tmpijf8h9m9/files:/tmp/tmpijf8h9m9/files:ro -v /scratch/rico/galaxy/tool-data:/scratch/rico/galaxy/tool-data:ro --cpus ${GALAXY_SLOTS:-1} -w /tmp/tmpijf8h9m9/job_working_directory/000/2/working --rm --user 1028:1028 ncbi/fcs-adaptor:0.5.0 /bin/sh /tmp/tmpijf8h9m9/job_working_directory/000/2/tool_script.sh > '../outputs/tool_stdout' 2> '../outputs/tool_stderr'; return_code=$?; echo $return_code > /tmp/tmpijf8h9m9/job_working_directory/000/2/galaxy_2.ec; if [ -f "/tmp/tmpijf8h9m9/job_working_directory/000/2/working/fcs_adaptor_report.txt" ] ; then cp "/tmp/tmpijf8h9m9/job_working_directory/000/2/working/fcs_adaptor_report.txt" "/tmp/tmpijf8h9m9/job_working_directory/000/2/outputs/dataset_bb6055de-1b98-4c16-9f0e-38e505701f5b.dat" ; fi; if [ -f "/tmp/tmpijf8h9m9/job_working_directory/000/2/working/cleaned_sequences/"*".dat" ] ; then cp "/tmp/tmpijf8h9m9/job_working_directory/000/2/working/cleaned_sequences/"*".dat" "/tmp/tmpijf8h9m9/job_working_directory/000/2/outputs/dataset_4f314a69-7d4c-4764-9515-f312e5ef96f0.dat" ; fi; cd '/tmp/tmpijf8h9m9/job_working_directory/000/2'; [ "$GALAXY_VIRTUAL_ENV" = "None" ] && GALAXY_VIRTUAL_ENV="$_GALAXY_VIRTUAL_ENV"; _galaxy_setup_environment True; python metadata/set.py; sh -c "exit $return_code" galaxy.jobs.runners.local DEBUG 2024-02-23 12:55:05,249 [pN:main.1,p:69789,tN:LocalRunner.work_thread-0] (2) executing job script: /tmp/tmpijf8h9m9/job_working_directory/000/2/galaxy_2.sh galaxy.jobs.runners.util.process_groups DEBUG 2024-02-23 12:55:53,942 [pN:main.1,p:69789,tN:LocalRunner.work_thread-0] check_pg(): No process found in process group 70013 galaxy.jobs.runners.local DEBUG 2024-02-23 12:55:53,944 [pN:main.1,p:69789,tN:LocalRunner.work_thread-0] execution finished: /tmp/tmpijf8h9m9/job_working_directory/000/2/galaxy_2.sh galaxy.jobs DEBUG 2024-02-23 12:55:53,966 [pN:main.1,p:69789,tN:LocalRunner.work_thread-0] finish(): Moved /tmp/tmpijf8h9m9/job_working_directory/000/2/outputs/dataset_bb6055de-1b98-4c16-9f0e-38e505701f5b.dat to /tmp/tmpijf8h9m9/files/b/b/6/dataset_bb6055de-1b98-4c16-9f0e-38e505701f5b.dat galaxy.jobs DEBUG 2024-02-23 12:55:53,966 [pN:main.1,p:69789,tN:LocalRunner.work_thread-0] finish(): Moved /tmp/tmpijf8h9m9/job_working_directory/000/2/outputs/dataset_4f314a69-7d4c-4764-9515-f312e5ef96f0.dat to /tmp/tmpijf8h9m9/files/4/f/3/dataset_4f314a69-7d4c-4764-9515-f312e5ef96f0.dat galaxy.model.metadata DEBUG 2024-02-23 12:55:53,975 [pN:main.1,p:69789,tN:LocalRunner.work_thread-0] loading metadata from file for: HistoryDatasetAssociation 2 galaxy.model.metadata DEBUG 2024-02-23 12:55:53,981 [pN:main.1,p:69789,tN:LocalRunner.work_thread-0] loading metadata from file for: HistoryDatasetAssociation 3 galaxy.jobs DEBUG 2024-02-23 12:55:54,011 [pN:main.1,p:69789,tN:LocalRunner.work_thread-0] job_wrapper.finish for job 2 executed (51.139 ms) multipart.multipart DEBUG 2024-02-23 12:55:54,703 [pN:main.1,p:69789,tN:MainThread] Calling on_field_start with no data multipart.multipart DEBUG 2024-02-23 12:55:54,703 [pN:main.1,p:69789,tN:MainThread] Calling on_field_name with data[0:4] multipart.multipart DEBUG 2024-02-23 12:55:54,703 [pN:main.1,p:69789,tN:MainThread] Calling on_field_data with data[5:63] multipart.multipart DEBUG 2024-02-23 12:55:54,703 [pN:main.1,p:69789,tN:MainThread] Calling on_field_end with no data multipart.multipart DEBUG 2024-02-23 12:55:54,703 [pN:main.1,p:69789,tN:MainThread] Calling on_end with no data galaxy.tools INFO 2024-02-23 12:55:54,855 [pN:main.1,p:69789,tN:WSGI_8] Validated and populated state for tool request (8.184 ms) galaxy.tools.actions.upload DEBUG 2024-02-23 12:55:54,857 [pN:main.1,p:69789,tN:WSGI_8] Persisted uploads (0.122 ms) galaxy.tools.actions.upload DEBUG 2024-02-23 12:55:54,928 [pN:main.1,p:69789,tN:WSGI_8] Checked uploads (70.077 ms) galaxy.tools.actions.upload DEBUG 2024-02-23 12:55:54,931 [pN:main.1,p:69789,tN:WSGI_8] Created upload job (2.953 ms) galaxy.tools.execute DEBUG 2024-02-23 12:55:54,931 [pN:main.1,p:69789,tN:WSGI_8] Tool upload1 created job None (73.807 ms) galaxy.web_stack.handlers INFO 2024-02-23 12:55:54,945 [pN:main.1,p:69789,tN:WSGI_8] (Job[id=3,tool_id=upload1]) Handler '_default_' assigned using 'HANDLER_ASSIGNMENT_METHODS.DB_SKIP_LOCKED' assignment method galaxy.tools.execute DEBUG 2024-02-23 12:55:54,949 [pN:main.1,p:69789,tN:WSGI_8] Created 1 job(s) for tool upload1 request (93.837 ms) galaxy.jobs.mapper DEBUG 2024-02-23 12:55:55,192 [pN:main.1,p:69789,tN:JobHandlerQueue.monitor_thread] (3) Mapped job to destination id: docker_local galaxy.jobs.handler DEBUG 2024-02-23 12:55:55,195 [pN:main.1,p:69789,tN:JobHandlerQueue.monitor_thread] (3) Dispatching to local runner galaxy.jobs DEBUG 2024-02-23 12:55:55,201 [pN:main.1,p:69789,tN:JobHandlerQueue.monitor_thread] (3) Persisting job destination (destination id: docker_local) galaxy.jobs DEBUG 2024-02-23 12:55:55,206 [pN:main.1,p:69789,tN:JobHandlerQueue.monitor_thread] (3) Working directory for job is: /tmp/tmpijf8h9m9/job_working_directory/000/3 galaxy.jobs.runners DEBUG 2024-02-23 12:55:55,211 [pN:main.1,p:69789,tN:JobHandlerQueue.monitor_thread] Job [3] queued (15.993 ms) galaxy.jobs.handler INFO 2024-02-23 12:55:55,221 [pN:main.1,p:69789,tN:JobHandlerQueue.monitor_thread] (3) Job dispatched galaxy.jobs DEBUG 2024-02-23 12:55:55,303 [pN:main.1,p:69789,tN:LocalRunner.work_thread-2] Job wrapper for Job [3] prepared (72.444 ms) galaxy.tool_util.deps.containers INFO 2024-02-23 12:55:55,303 [pN:main.1,p:69789,tN:LocalRunner.work_thread-2] Checking with container resolver [ExplicitContainerResolver[]] found description [None] galaxy.tool_util.deps.containers INFO 2024-02-23 12:55:55,304 [pN:main.1,p:69789,tN:LocalRunner.work_thread-2] Checking with container resolver [CachedMulledDockerContainerResolver[namespace=biocontainers]] found description [None] galaxy.tool_util.deps.containers INFO 2024-02-23 12:55:55,304 [pN:main.1,p:69789,tN:LocalRunner.work_thread-2] Checking with container resolver [CachedMulledDockerContainerResolver[namespace=local]] found description [None] galaxy.tool_util.deps.containers INFO 2024-02-23 12:55:55,304 [pN:main.1,p:69789,tN:LocalRunner.work_thread-2] Checking with container resolver [MulledDockerContainerResolver[namespace=biocontainers]] found description [None] galaxy.tool_util.deps.containers INFO 2024-02-23 12:55:55,304 [pN:main.1,p:69789,tN:LocalRunner.work_thread-2] Checking with container resolver [BuildDockerContainerResolver[namespace=local]] found description [None] galaxy.jobs.command_factory INFO 2024-02-23 12:55:55,333 [pN:main.1,p:69789,tN:LocalRunner.work_thread-2] Built script [/tmp/tmpijf8h9m9/job_working_directory/000/3/tool_script.sh] for tool command [python '/scratch/rico/galaxy/tools/data_source/upload.py' '/scratch/rico/galaxy' '/tmp/tmpijf8h9m9/job_working_directory/000/3/registry.xml' '/tmp/tmpijf8h9m9/job_working_directory/000/3/upload_params.json' '4:/tmp/tmpijf8h9m9/job_working_directory/000/3/outputs/dataset_3361cae0-3148-41a0-9138-5c1182f5ad0a_files:/tmp/tmpijf8h9m9/job_working_directory/000/3/outputs/dataset_3361cae0-3148-41a0-9138-5c1182f5ad0a.dat'] galaxy.jobs.runners DEBUG 2024-02-23 12:55:55,360 [pN:main.1,p:69789,tN:LocalRunner.work_thread-2] (3) command is: mkdir -p working outputs configs if [ -d _working ]; then rm -rf working/ outputs/ configs/; cp -R _working working; cp -R _outputs outputs; cp -R _configs configs else cp -R working _working; cp -R outputs _outputs; cp -R configs _configs fi cd working; /bin/bash /tmp/tmpijf8h9m9/job_working_directory/000/3/tool_script.sh > '../outputs/tool_stdout' 2> '../outputs/tool_stderr'; return_code=$?; echo $return_code > /tmp/tmpijf8h9m9/job_working_directory/000/3/galaxy_3.ec; cd '/tmp/tmpijf8h9m9/job_working_directory/000/3'; [ "$GALAXY_VIRTUAL_ENV" = "None" ] && GALAXY_VIRTUAL_ENV="$_GALAXY_VIRTUAL_ENV"; _galaxy_setup_environment True; python metadata/set.py; sh -c "exit $return_code" galaxy.jobs.runners.local DEBUG 2024-02-23 12:55:55,383 [pN:main.1,p:69789,tN:LocalRunner.work_thread-2] (3) executing job script: /tmp/tmpijf8h9m9/job_working_directory/000/3/galaxy_3.sh galaxy.jobs.runners.util.process_groups DEBUG 2024-02-23 12:56:02,536 [pN:main.1,p:69789,tN:LocalRunner.work_thread-2] check_pg(): No process found in process group 70480 galaxy.jobs.runners.local DEBUG 2024-02-23 12:56:02,538 [pN:main.1,p:69789,tN:LocalRunner.work_thread-2] execution finished: /tmp/tmpijf8h9m9/job_working_directory/000/3/galaxy_3.sh galaxy.jobs DEBUG 2024-02-23 12:56:02,560 [pN:main.1,p:69789,tN:LocalRunner.work_thread-2] finish(): Moved /tmp/tmpijf8h9m9/job_working_directory/000/3/outputs/dataset_3361cae0-3148-41a0-9138-5c1182f5ad0a.dat to /tmp/tmpijf8h9m9/files/3/3/6/dataset_3361cae0-3148-41a0-9138-5c1182f5ad0a.dat galaxy.model.metadata DEBUG 2024-02-23 12:56:02,569 [pN:main.1,p:69789,tN:LocalRunner.work_thread-2] loading metadata from file for: HistoryDatasetAssociation 4 galaxy.jobs DEBUG 2024-02-23 12:56:02,595 [pN:main.1,p:69789,tN:LocalRunner.work_thread-2] job_wrapper.finish for job 3 executed (41.321 ms) galaxy.tools INFO 2024-02-23 12:56:02,854 [pN:main.1,p:69789,tN:WSGI_5] Validated and populated state for tool request (4.172 ms) galaxy.tools.actions INFO 2024-02-23 12:56:02,859 [pN:main.1,p:69789,tN:WSGI_5] Handled output named adaptor_report for tool ncbi_fcs_adaptor (1.302 ms) galaxy.tools.actions INFO 2024-02-23 12:56:02,860 [pN:main.1,p:69789,tN:WSGI_5] Handled output named clean_fasta for tool ncbi_fcs_adaptor (0.785 ms) galaxy.tools.actions DEBUG 2024-02-23 12:56:02,860 [pN:main.1,p:69789,tN:WSGI_5] Tool ncbi_fcs_adaptor output adaptor_log: dataset output filter (advanced['optional_log'] is not None and 'adaptor_log' in advanced['optional_log'].split(',')) failed: 'list' object has no attribute 'split' galaxy.tools.actions INFO 2024-02-23 12:56:02,863 [pN:main.1,p:69789,tN:WSGI_5] Handled output named adaptor_log for tool ncbi_fcs_adaptor (3.228 ms) galaxy.tools.actions DEBUG 2024-02-23 12:56:02,863 [pN:main.1,p:69789,tN:WSGI_5] Tool ncbi_fcs_adaptor output validate_fasta_log: dataset output filter (advanced['optional_log'] is not None and 'validate_fasta_log' in advanced['optional_log'].split(',')) failed: 'list' object has no attribute 'split' galaxy.tools.actions INFO 2024-02-23 12:56:02,866 [pN:main.1,p:69789,tN:WSGI_5] Handled output named validate_fasta_log for tool ncbi_fcs_adaptor (2.553 ms) galaxy.tools.actions INFO 2024-02-23 12:56:02,874 [pN:main.1,p:69789,tN:WSGI_5] Added output datasets to history (7.767 ms) galaxy.tools.actions INFO 2024-02-23 12:56:02,876 [pN:main.1,p:69789,tN:WSGI_5] Setup for job Job[unflushed,tool_id=ncbi_fcs_adaptor] complete, ready to be enqueued (2.027 ms) galaxy.tools.execute DEBUG 2024-02-23 12:56:02,876 [pN:main.1,p:69789,tN:WSGI_5] Tool ncbi_fcs_adaptor created job None (20.421 ms) galaxy.web_stack.handlers INFO 2024-02-23 12:56:02,902 [pN:main.1,p:69789,tN:WSGI_5] (Job[id=4,tool_id=ncbi_fcs_adaptor]) Handler '_default_' assigned using 'HANDLER_ASSIGNMENT_METHODS.DB_SKIP_LOCKED' assignment method galaxy.tools.execute DEBUG 2024-02-23 12:56:02,915 [pN:main.1,p:69789,tN:WSGI_5] Created 1 job(s) for tool ncbi_fcs_adaptor request (61.104 ms) galaxy.jobs.mapper DEBUG 2024-02-23 12:56:03,436 [pN:main.1,p:69789,tN:JobHandlerQueue.monitor_thread] (4) Mapped job to destination id: docker_local galaxy.jobs.handler DEBUG 2024-02-23 12:56:03,438 [pN:main.1,p:69789,tN:JobHandlerQueue.monitor_thread] (4) Dispatching to local runner galaxy.jobs DEBUG 2024-02-23 12:56:03,443 [pN:main.1,p:69789,tN:JobHandlerQueue.monitor_thread] (4) Persisting job destination (destination id: docker_local) galaxy.jobs DEBUG 2024-02-23 12:56:03,449 [pN:main.1,p:69789,tN:JobHandlerQueue.monitor_thread] (4) Working directory for job is: /tmp/tmpijf8h9m9/job_working_directory/000/4 galaxy.jobs.runners DEBUG 2024-02-23 12:56:03,455 [pN:main.1,p:69789,tN:JobHandlerQueue.monitor_thread] Job [4] queued (16.098 ms) galaxy.jobs.handler INFO 2024-02-23 12:56:03,463 [pN:main.1,p:69789,tN:JobHandlerQueue.monitor_thread] (4) Job dispatched galaxy.jobs DEBUG 2024-02-23 12:56:03,506 [pN:main.1,p:69789,tN:LocalRunner.work_thread-2] Job wrapper for Job [4] prepared (36.021 ms) galaxy.tool_util.deps.containers INFO 2024-02-23 12:56:03,506 [pN:main.1,p:69789,tN:LocalRunner.work_thread-2] Checking with container resolver [ExplicitContainerResolver[]] found description [ContainerDescription[identifier=ncbi/fcs-adaptor:0.5.0,type=docker]] galaxy.jobs.command_factory INFO 2024-02-23 12:56:03,547 [pN:main.1,p:69789,tN:LocalRunner.work_thread-2] Built script [/tmp/tmpijf8h9m9/job_working_directory/000/4/tool_script.sh] for tool command [/app/fcs/bin/av_screen_x -o "$(pwd)" '--prok' '/tmp/tmpijf8h9m9/files/3/3/6/dataset_3361cae0-3148-41a0-9138-5c1182f5ad0a.dat'] galaxy.jobs.runners DEBUG 2024-02-23 12:56:03,621 [pN:main.1,p:69789,tN:LocalRunner.work_thread-2] (4) command is: mkdir -p working outputs configs if [ -d _working ]; then rm -rf working/ outputs/ configs/; cp -R _working working; cp -R _outputs outputs; cp -R _configs configs else cp -R working _working; cp -R outputs _outputs; cp -R configs _configs fi cd working; _on_exit() { docker kill b953454bbdcb490db83493e625aba986 &> /dev/null } trap _on_exit EXIT docker inspect ncbi/fcs-adaptor:0.5.0 > /dev/null 2>&1 [ $? -ne 0 ] && docker pull ncbi/fcs-adaptor:0.5.0 > /dev/null 2>&1 docker run -e "GALAXY_SLOTS=$GALAXY_SLOTS" -e "GALAXY_MEMORY_MB=$GALAXY_MEMORY_MB" -e "GALAXY_MEMORY_MB_PER_SLOT=$GALAXY_MEMORY_MB_PER_SLOT" -e "HOME=$HOME" -e "_GALAXY_JOB_HOME_DIR=$_GALAXY_JOB_HOME_DIR" -e "_GALAXY_JOB_TMP_DIR=$_GALAXY_JOB_TMP_DIR" -e "TMPDIR=$TMPDIR" -e "TMP=$TMP" -e "TEMP=$TEMP" --name b953454bbdcb490db83493e625aba986 -v "$_GALAXY_JOB_TMP_DIR:$_GALAXY_JOB_TMP_DIR:rw" -v "$TMPDIR:$TMPDIR:rw" -v "$TMP:$TMP:rw" -v "$TEMP:$TEMP:rw" -v /scratch/rico/galaxy:/scratch/rico/galaxy:ro -v /scratch/rico/galaxytools/tools/ncbi_fcs_adaptor:/scratch/rico/galaxytools/tools/ncbi_fcs_adaptor:ro -v /tmp/tmpijf8h9m9/job_working_directory/000/4:/tmp/tmpijf8h9m9/job_working_directory/000/4:ro -v /tmp/tmpijf8h9m9/job_working_directory/000/4/outputs:/tmp/tmpijf8h9m9/job_working_directory/000/4/outputs:rw -v "$_GALAXY_JOB_HOME_DIR:$_GALAXY_JOB_HOME_DIR:rw" -v /tmp/tmpijf8h9m9/job_working_directory/000/4/working:/tmp/tmpijf8h9m9/job_working_directory/000/4/working:rw -v /tmp/tmpijf8h9m9/files:/tmp/tmpijf8h9m9/files:ro -v /scratch/rico/galaxy/tool-data:/scratch/rico/galaxy/tool-data:ro --cpus ${GALAXY_SLOTS:-1} -w /tmp/tmpijf8h9m9/job_working_directory/000/4/working --rm --user 1028:1028 ncbi/fcs-adaptor:0.5.0 /bin/sh /tmp/tmpijf8h9m9/job_working_directory/000/4/tool_script.sh > '../outputs/tool_stdout' 2> '../outputs/tool_stderr'; return_code=$?; echo $return_code > /tmp/tmpijf8h9m9/job_working_directory/000/4/galaxy_4.ec; if [ -f "/tmp/tmpijf8h9m9/job_working_directory/000/4/working/fcs_adaptor_report.txt" ] ; then cp "/tmp/tmpijf8h9m9/job_working_directory/000/4/working/fcs_adaptor_report.txt" "/tmp/tmpijf8h9m9/job_working_directory/000/4/outputs/dataset_8f5eb96f-71ec-464d-9256-2eda033e242c.dat" ; fi; if [ -f "/tmp/tmpijf8h9m9/job_working_directory/000/4/working/cleaned_sequences/"*".dat" ] ; then cp "/tmp/tmpijf8h9m9/job_working_directory/000/4/working/cleaned_sequences/"*".dat" "/tmp/tmpijf8h9m9/job_working_directory/000/4/outputs/dataset_a801cb02-42b3-4ed6-bcfd-2b2eb0a97a7f.dat" ; fi; if [ -f "/tmp/tmpijf8h9m9/job_working_directory/000/4/working/fcs_adaptor.log" ] ; then cp "/tmp/tmpijf8h9m9/job_working_directory/000/4/working/fcs_adaptor.log" "/tmp/tmpijf8h9m9/job_working_directory/000/4/outputs/dataset_ecfaed24-c19f-4f60-bb41-2dc06c2cec3e.dat" ; fi; if [ -f "/tmp/tmpijf8h9m9/job_working_directory/000/4/working/validate_fasta.txt" ] ; then cp "/tmp/tmpijf8h9m9/job_working_directory/000/4/working/validate_fasta.txt" "/tmp/tmpijf8h9m9/job_working_directory/000/4/outputs/dataset_fa88d599-dff3-404d-8ac2-e1986a02afcb.dat" ; fi; cd '/tmp/tmpijf8h9m9/job_working_directory/000/4'; [ "$GALAXY_VIRTUAL_ENV" = "None" ] && GALAXY_VIRTUAL_ENV="$_GALAXY_VIRTUAL_ENV"; _galaxy_setup_environment True; python metadata/set.py; sh -c "exit $return_code" galaxy.jobs.runners.local DEBUG 2024-02-23 12:56:03,646 [pN:main.1,p:69789,tN:LocalRunner.work_thread-2] (4) executing job script: /tmp/tmpijf8h9m9/job_working_directory/000/4/galaxy_4.sh galaxy.jobs.runners.util.process_groups DEBUG 2024-02-23 12:56:56,297 [pN:main.1,p:69789,tN:LocalRunner.work_thread-2] check_pg(): No process found in process group 70635 galaxy.jobs.runners.local DEBUG 2024-02-23 12:56:56,299 [pN:main.1,p:69789,tN:LocalRunner.work_thread-2] execution finished: /tmp/tmpijf8h9m9/job_working_directory/000/4/galaxy_4.sh galaxy.jobs DEBUG 2024-02-23 12:56:56,327 [pN:main.1,p:69789,tN:LocalRunner.work_thread-2] finish(): Moved /tmp/tmpijf8h9m9/job_working_directory/000/4/outputs/dataset_8f5eb96f-71ec-464d-9256-2eda033e242c.dat to /tmp/tmpijf8h9m9/files/8/f/5/dataset_8f5eb96f-71ec-464d-9256-2eda033e242c.dat galaxy.jobs DEBUG 2024-02-23 12:56:56,327 [pN:main.1,p:69789,tN:LocalRunner.work_thread-2] finish(): Moved /tmp/tmpijf8h9m9/job_working_directory/000/4/outputs/dataset_a801cb02-42b3-4ed6-bcfd-2b2eb0a97a7f.dat to /tmp/tmpijf8h9m9/files/a/8/0/dataset_a801cb02-42b3-4ed6-bcfd-2b2eb0a97a7f.dat galaxy.jobs DEBUG 2024-02-23 12:56:56,327 [pN:main.1,p:69789,tN:LocalRunner.work_thread-2] finish(): Moved /tmp/tmpijf8h9m9/job_working_directory/000/4/outputs/dataset_ecfaed24-c19f-4f60-bb41-2dc06c2cec3e.dat to /tmp/tmpijf8h9m9/files/e/c/f/dataset_ecfaed24-c19f-4f60-bb41-2dc06c2cec3e.dat galaxy.jobs DEBUG 2024-02-23 12:56:56,328 [pN:main.1,p:69789,tN:LocalRunner.work_thread-2] finish(): Moved /tmp/tmpijf8h9m9/job_working_directory/000/4/outputs/dataset_fa88d599-dff3-404d-8ac2-e1986a02afcb.dat to /tmp/tmpijf8h9m9/files/f/a/8/dataset_fa88d599-dff3-404d-8ac2-e1986a02afcb.dat galaxy.model.metadata DEBUG 2024-02-23 12:56:56,339 [pN:main.1,p:69789,tN:LocalRunner.work_thread-2] loading metadata from file for: HistoryDatasetAssociation 5 galaxy.model.metadata DEBUG 2024-02-23 12:56:56,343 [pN:main.1,p:69789,tN:LocalRunner.work_thread-2] loading metadata from file for: HistoryDatasetAssociation 6 galaxy.model.metadata DEBUG 2024-02-23 12:56:56,346 [pN:main.1,p:69789,tN:LocalRunner.work_thread-2] loading metadata from file for: HistoryDatasetAssociation 7 galaxy.model.metadata DEBUG 2024-02-23 12:56:56,369 [pN:main.1,p:69789,tN:LocalRunner.work_thread-2] loading metadata from file for: HistoryDatasetAssociation 8 galaxy.jobs DEBUG 2024-02-23 12:56:56,431 [pN:main.1,p:69789,tN:LocalRunner.work_thread-2] job_wrapper.finish for job 4 executed (109.753 ms) galaxy.queue_worker INFO 2024-02-23 12:56:58,020 [pN:main.1,p:69789,tN:MainThread] Sending reconfigure_watcher control task. galaxy.util.monitors DEBUG 2024-02-23 12:56:58,040 [pN:main.1,p:69789,tN:MainThread] Joining monitor thread galaxy.jobs.handler INFO 2024-02-23 12:56:58,041 [pN:main.1,p:69789,tN:MainThread] sending stop signal to worker thread galaxy.util.monitors DEBUG 2024-02-23 12:56:58,041 [pN:main.1,p:69789,tN:MainThread] Joining monitor thread galaxy.jobs.handler INFO 2024-02-23 12:56:58,041 [pN:main.1,p:69789,tN:MainThread] job handler queue stopped galaxy.jobs.runners INFO 2024-02-23 12:56:58,041 [pN:main.1,p:69789,tN:MainThread] LocalRunner: Sending stop signal to 4 job worker threads galaxy.jobs.runners INFO 2024-02-23 12:56:58,042 [pN:main.1,p:69789,tN:MainThread] Waiting up to 30 seconds for job worker threads to shutdown... galaxy.jobs.runners DEBUG 2024-02-23 12:56:58,042 [pN:main.1,p:69789,tN:MainThread] Job worker thread terminated: LocalRunner.work_thread-0 galaxy.jobs.runners INFO 2024-02-23 12:56:58,042 [pN:main.1,p:69789,tN:MainThread] All job worker threads shutdown cleanly galaxy.jobs.handler INFO 2024-02-23 12:56:58,043 [pN:main.1,p:69789,tN:MainThread] sending stop signal to worker thread galaxy.util.monitors DEBUG 2024-02-23 12:56:58,043 [pN:main.1,p:69789,tN:MainThread] Joining monitor thread galaxy.jobs.handler INFO 2024-02-23 12:56:58,043 [pN:main.1,p:69789,tN:MainThread] job handler stop queue stopped galaxy.jobs DEBUG 2024-02-23 13:02:33,456 [pN:main,p:71805,tN:MainThread] Loading job configuration from /scratch/rico/galaxytools/tools/ncbi_fcs_adaptor/planemo_job_conf.xml galaxy.jobs DEBUG 2024-02-23 13:02:33,456 [pN:main,p:71805,tN:MainThread] Read job configuration from file: /scratch/rico/galaxytools/tools/ncbi_fcs_adaptor/planemo_job_conf.xml galaxy.web_stack.handlers INFO 2024-02-23 13:02:33,475 [pN:main,p:71805,tN:MainThread] JobConfiguration: No job handler assignment method is set, defaulting to 'HANDLER_ASSIGNMENT_METHODS.DB_SKIP_LOCKED', set the `assign_with` attribute on <handlers> to override the default galaxy.jobs INFO 2024-02-23 13:02:33,475 [pN:main,p:71805,tN:MainThread] Job handler assignment methods set to: db-skip-locked galaxy.web_stack.handlers DEBUG 2024-02-23 13:02:33,475 [pN:main,p:71805,tN:MainThread] default set to child with id or tag 'docker_local' galaxy.jobs DEBUG 2024-02-23 13:02:33,475 [pN:main,p:71805,tN:MainThread] Done loading job configuration galaxy.security.vault WARNING 2024-02-23 13:02:33,598 [pN:main,p:71805,tN:MainThread] No vault configured. We recommend defining the vault_config_file setting in galaxy.yml galaxy.datatypes.registry DEBUG 2024-02-23 13:02:33,625 [pN:main,p:71805,tN:MainThread] Loading datatypes from /scratch/rico/galaxy/lib/galaxy/config/sample/datatypes_conf.xml.sample galaxy.datatypes.registry DEBUG 2024-02-23 13:02:33,625 [pN:main,p:71805,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension source.h. galaxy.datatypes.registry DEBUG 2024-02-23 13:02:33,626 [pN:main,p:71805,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension source.c. galaxy.datatypes.registry DEBUG 2024-02-23 13:02:33,626 [pN:main,p:71805,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension source.cpp. galaxy.datatypes.registry DEBUG 2024-02-23 13:02:33,626 [pN:main,p:71805,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension source.py. galaxy.datatypes.registry DEBUG 2024-02-23 13:02:33,626 [pN:main,p:71805,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension source.go. galaxy.datatypes.registry DEBUG 2024-02-23 13:02:33,626 [pN:main,p:71805,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension source.rs. galaxy.datatypes.registry DEBUG 2024-02-23 13:02:33,626 [pN:main,p:71805,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension source.cs. galaxy.datatypes.registry DEBUG 2024-02-23 13:02:33,626 [pN:main,p:71805,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:Binary from the datatype registry for extension hep.root. galaxy.datatypes.registry DEBUG 2024-02-23 13:02:33,626 [pN:main,p:71805,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:JP2 from the datatype registry for extension jp2. galaxy.datatypes.registry DEBUG 2024-02-23 13:02:33,626 [pN:main,p:71805,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:Ab1 from the datatype registry for extension ab1. galaxy.datatypes.registry DEBUG 2024-02-23 13:02:33,627 [pN:main,p:71805,tN:MainThread] Retrieved datatype module galaxy.datatypes.assembly:Amos from the datatype registry for extension afg. galaxy.datatypes.registry DEBUG 2024-02-23 13:02:33,627 [pN:main,p:71805,tN:MainThread] Retrieved datatype module galaxy.datatypes.goldenpath:GoldenPath from the datatype registry for extension agp. galaxy.datatypes.registry DEBUG 2024-02-23 13:02:33,628 [pN:main,p:71805,tN:MainThread] Retrieved datatype module galaxy.datatypes.anvio:AnvioComposite from the datatype registry for extension anvio_cog_profile. galaxy.datatypes.registry DEBUG 2024-02-23 13:02:33,628 [pN:main,p:71805,tN:MainThread] Retrieved datatype module galaxy.datatypes.anvio:AnvioComposite from the datatype registry for extension anvio_composite. galaxy.datatypes.registry DEBUG 2024-02-23 13:02:33,628 [pN:main,p:71805,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:Data from the datatype registry for extension anvio_classifier. galaxy.datatypes.registry DEBUG 2024-02-23 13:02:33,628 [pN:main,p:71805,tN:MainThread] Retrieved datatype module galaxy.datatypes.anvio:AnvioContigsDB from the datatype registry for extension anvio_contigs_db. galaxy.datatypes.registry DEBUG 2024-02-23 13:02:33,628 [pN:main,p:71805,tN:MainThread] Retrieved datatype module galaxy.datatypes.anvio:AnvioDB from the datatype registry for extension anvio_db. galaxy.datatypes.registry DEBUG 2024-02-23 13:02:33,628 [pN:main,p:71805,tN:MainThread] Retrieved datatype module galaxy.datatypes.anvio:AnvioGenomesDB from the datatype registry for extension anvio_genomes_db. galaxy.datatypes.registry DEBUG 2024-02-23 13:02:33,628 [pN:main,p:71805,tN:MainThread] Retrieved datatype module galaxy.datatypes.anvio:AnvioPanDB from the datatype registry for extension anvio_pan_db. galaxy.datatypes.registry DEBUG 2024-02-23 13:02:33,628 [pN:main,p:71805,tN:MainThread] Retrieved datatype module galaxy.datatypes.anvio:AnvioComposite from the datatype registry for extension anvio_pfam_profile. galaxy.datatypes.registry DEBUG 2024-02-23 13:02:33,628 [pN:main,p:71805,tN:MainThread] Retrieved datatype module galaxy.datatypes.anvio:AnvioProfileDB from the datatype registry for extension anvio_profile_db. galaxy.datatypes.registry DEBUG 2024-02-23 13:02:33,628 [pN:main,p:71805,tN:MainThread] Retrieved datatype module galaxy.datatypes.anvio:AnvioSamplesDB from the datatype registry for extension anvio_samples_db. galaxy.datatypes.registry DEBUG 2024-02-23 13:02:33,628 [pN:main,p:71805,tN:MainThread] Retrieved datatype module galaxy.datatypes.text:Json from the datatype registry for extension anvio_state. galaxy.datatypes.registry DEBUG 2024-02-23 13:02:33,628 [pN:main,p:71805,tN:MainThread] Retrieved datatype module galaxy.datatypes.anvio:AnvioStructureDB from the datatype registry for extension anvio_structure_db. galaxy.datatypes.registry DEBUG 2024-02-23 13:02:33,628 [pN:main,p:71805,tN:MainThread] Retrieved datatype module galaxy.datatypes.tabular:TSV from the datatype registry for extension anvio_variability. galaxy.datatypes.registry DEBUG 2024-02-23 13:02:33,629 [pN:main,p:71805,tN:MainThread] Retrieved datatype module galaxy.datatypes.text:Arff from the datatype registry for extension arff. galaxy.datatypes.registry DEBUG 2024-02-23 13:02:33,629 [pN:main,p:71805,tN:MainThread] Retrieved datatype module galaxy.datatypes.text:Paf from the datatype registry for extension paf. galaxy.datatypes.registry DEBUG 2024-02-23 13:02:33,629 [pN:main,p:71805,tN:MainThread] Retrieved datatype module galaxy.datatypes.text:Gfa1 from the datatype registry for extension gfa1. galaxy.datatypes.registry DEBUG 2024-02-23 13:02:33,629 [pN:main,p:71805,tN:MainThread] Retrieved datatype module galaxy.datatypes.text:Gfa2 from the datatype registry for extension gfa2. galaxy.datatypes.registry DEBUG 2024-02-23 13:02:33,629 [pN:main,p:71805,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:GenericAsn1 from the datatype registry for extension asn1. galaxy.datatypes.registry DEBUG 2024-02-23 13:02:33,629 [pN:main,p:71805,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:GenericAsn1Binary from the datatype registry for extension asn1-binary. galaxy.datatypes.registry DEBUG 2024-02-23 13:02:33,629 [pN:main,p:71805,tN:MainThread] Retrieved datatype module galaxy.datatypes.sequence:Axt from the datatype registry for extension axt. galaxy.datatypes.registry DEBUG 2024-02-23 13:02:33,629 [pN:main,p:71805,tN:MainThread] Retrieved datatype module galaxy.datatypes.tabular:FeatureLocationIndex from the datatype registry for extension fli. galaxy.datatypes.registry DEBUG 2024-02-23 13:02:33,629 [pN:main,p:71805,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:Bam from the datatype registry for extension bam. galaxy.datatypes.registry DEBUG 2024-02-23 13:02:33,629 [pN:main,p:71805,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:Binary from the datatype registry for extension bai. galaxy.datatypes.registry DEBUG 2024-02-23 13:02:33,629 [pN:main,p:71805,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:BamInputSorted from the datatype registry for extension qname_input_sorted.bam. galaxy.datatypes.registry DEBUG 2024-02-23 13:02:33,629 [pN:main,p:71805,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:BamQuerynameSorted from the datatype registry for extension qname_sorted.bam. galaxy.datatypes.registry DEBUG 2024-02-23 13:02:33,629 [pN:main,p:71805,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:BamNative from the datatype registry for extension unsorted.bam. galaxy.datatypes.registry DEBUG 2024-02-23 13:02:33,629 [pN:main,p:71805,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:ProBam from the datatype registry for extension probam. galaxy.datatypes.registry DEBUG 2024-02-23 13:02:33,630 [pN:main,p:71805,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:CRAM from the datatype registry for extension cram. galaxy.datatypes.registry DEBUG 2024-02-23 13:02:33,630 [pN:main,p:71805,tN:MainThread] Retrieved datatype module galaxy.datatypes.interval:Bed from the datatype registry for extension bed. galaxy.datatypes.registry DEBUG 2024-02-23 13:02:33,630 [pN:main,p:71805,tN:MainThread] Retrieved datatype module galaxy.datatypes.interval:BedGraph from the datatype registry for extension bedgraph. galaxy.datatypes.registry DEBUG 2024-02-23 13:02:33,630 [pN:main,p:71805,tN:MainThread] Retrieved datatype module galaxy.datatypes.interval:BedStrict from the datatype registry for extension bedstrict. galaxy.datatypes.registry DEBUG 2024-02-23 13:02:33,630 [pN:main,p:71805,tN:MainThread] Retrieved datatype module galaxy.datatypes.interval:Bed6 from the datatype registry for extension bed6. galaxy.datatypes.registry DEBUG 2024-02-23 13:02:33,630 [pN:main,p:71805,tN:MainThread] Retrieved datatype module galaxy.datatypes.interval:Bed12 from the datatype registry for extension bed12. galaxy.datatypes.registry DEBUG 2024-02-23 13:02:33,630 [pN:main,p:71805,tN:MainThread] Retrieved datatype module galaxy.datatypes.interval:ProBed from the datatype registry for extension probed. galaxy.datatypes.registry DEBUG 2024-02-23 13:02:33,630 [pN:main,p:71805,tN:MainThread] Retrieved datatype module galaxy.datatypes.chrominfo:ChromInfo from the datatype registry for extension len. galaxy.datatypes.registry DEBUG 2024-02-23 13:02:33,630 [pN:main,p:71805,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:DAA from the datatype registry for extension daa. galaxy.datatypes.registry DEBUG 2024-02-23 13:02:33,630 [pN:main,p:71805,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:RMA6 from the datatype registry for extension rma6. galaxy.datatypes.registry DEBUG 2024-02-23 13:02:33,630 [pN:main,p:71805,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:DMND from the datatype registry for extension dmnd. galaxy.datatypes.registry DEBUG 2024-02-23 13:02:33,631 [pN:main,p:71805,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:Parquet from the datatype registry for extension parquet. galaxy.datatypes.registry DEBUG 2024-02-23 13:02:33,631 [pN:main,p:71805,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:Idat from the datatype registry for extension idat. galaxy.datatypes.registry DEBUG 2024-02-23 13:02:33,631 [pN:main,p:71805,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:BigBed from the datatype registry for extension bigbed. galaxy.datatypes.registry DEBUG 2024-02-23 13:02:33,631 [pN:main,p:71805,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:BigWig from the datatype registry for extension bigwig. galaxy.datatypes.registry DEBUG 2024-02-23 13:02:33,631 [pN:main,p:71805,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:Binary from the datatype registry for extension cxb. galaxy.datatypes.registry DEBUG 2024-02-23 13:02:33,631 [pN:main,p:71805,tN:MainThread] Retrieved datatype module galaxy.datatypes.interval:ChromatinInteractions from the datatype registry for extension chrint. galaxy.datatypes.registry DEBUG 2024-02-23 13:02:33,631 [pN:main,p:71805,tN:MainThread] Retrieved datatype module galaxy.datatypes.tabular:CSV from the datatype registry for extension csv. galaxy.datatypes.registry DEBUG 2024-02-23 13:02:33,631 [pN:main,p:71805,tN:MainThread] Retrieved datatype module galaxy.datatypes.tabular:TSV from the datatype registry for extension tsv. galaxy.datatypes.registry DEBUG 2024-02-23 13:02:33,631 [pN:main,p:71805,tN:MainThread] Retrieved datatype module galaxy.datatypes.tabular:TSV from the datatype registry for extension intermine_tabular. galaxy.datatypes.registry DEBUG 2024-02-23 13:02:33,631 [pN:main,p:71805,tN:MainThread] Retrieved datatype module galaxy.datatypes.interval:CustomTrack from the datatype registry for extension customtrack. galaxy.datatypes.registry DEBUG 2024-02-23 13:02:33,631 [pN:main,p:71805,tN:MainThread] Retrieved datatype module galaxy.datatypes.ngsindex:BowtieColorIndex from the datatype registry for extension bowtie_color_index. galaxy.datatypes.registry DEBUG 2024-02-23 13:02:33,632 [pN:main,p:71805,tN:MainThread] Retrieved datatype module galaxy.datatypes.ngsindex:BowtieBaseIndex from the datatype registry for extension bowtie_base_index. galaxy.datatypes.registry DEBUG 2024-02-23 13:02:33,632 [pN:main,p:71805,tN:MainThread] Retrieved datatype module galaxy.datatypes.sequence:csFasta from the datatype registry for extension csfasta. galaxy.datatypes.registry DEBUG 2024-02-23 13:02:33,632 [pN:main,p:71805,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:Data from the datatype registry for extension data. galaxy.datatypes.registry DEBUG 2024-02-23 13:02:33,632 [pN:main,p:71805,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:Binary from the datatype registry for extension gz. galaxy.datatypes.registry DEBUG 2024-02-23 13:02:33,632 [pN:main,p:71805,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:Binary from the datatype registry for extension binary. galaxy.datatypes.registry DEBUG 2024-02-23 13:02:33,632 [pN:main,p:71805,tN:MainThread] Retrieved datatype module galaxy.datatypes.text:Json from the datatype registry for extension d3_hierarchy. galaxy.datatypes.registry DEBUG 2024-02-23 13:02:33,632 [pN:main,p:71805,tN:MainThread] Retrieved datatype module galaxy.datatypes.text:ImgtJson from the datatype registry for extension imgt.json. galaxy.datatypes.registry DEBUG 2024-02-23 13:02:33,632 [pN:main,p:71805,tN:MainThread] Retrieved datatype module galaxy.datatypes.text:GeoJson from the datatype registry for extension geojson. galaxy.datatypes.registry DEBUG 2024-02-23 13:02:33,632 [pN:main,p:71805,tN:MainThread] Retrieved datatype module galaxy.datatypes.text:Json from the datatype registry for extension data_manager_json. galaxy.datatypes.registry DEBUG 2024-02-23 13:02:33,632 [pN:main,p:71805,tN:MainThread] Retrieved datatype module galaxy.datatypes.sequence:DotBracket from the datatype registry for extension dbn. galaxy.datatypes.registry DEBUG 2024-02-23 13:02:33,632 [pN:main,p:71805,tN:MainThread] Retrieved datatype module galaxy.datatypes.tabular:Tabular from the datatype registry for extension fai. galaxy.datatypes.registry DEBUG 2024-02-23 13:02:33,632 [pN:main,p:71805,tN:MainThread] Retrieved datatype module galaxy.datatypes.sequence:Fasta from the datatype registry for extension fasta. galaxy.datatypes.registry DEBUG 2024-02-23 13:02:33,632 [pN:main,p:71805,tN:MainThread] Retrieved datatype module galaxy.datatypes.sequence:Fastg from the datatype registry for extension fastg. galaxy.datatypes.registry DEBUG 2024-02-23 13:02:33,632 [pN:main,p:71805,tN:MainThread] Retrieved datatype module galaxy.datatypes.sequence:Fastq from the datatype registry for extension fastq. galaxy.datatypes.registry DEBUG 2024-02-23 13:02:33,633 [pN:main,p:71805,tN:MainThread] Retrieved datatype module galaxy.datatypes.sequence:FastqSanger from the datatype registry for extension fastqsanger. galaxy.datatypes.registry DEBUG 2024-02-23 13:02:33,633 [pN:main,p:71805,tN:MainThread] Retrieved datatype module galaxy.datatypes.sequence:FastqSolexa from the datatype registry for extension fastqsolexa. galaxy.datatypes.registry DEBUG 2024-02-23 13:02:33,633 [pN:main,p:71805,tN:MainThread] Retrieved datatype module galaxy.datatypes.sequence:FastqCSSanger from the datatype registry for extension fastqcssanger. galaxy.datatypes.registry DEBUG 2024-02-23 13:02:33,633 [pN:main,p:71805,tN:MainThread] Retrieved datatype module galaxy.datatypes.sequence:FastqIllumina from the datatype registry for extension fastqillumina. galaxy.datatypes.registry DEBUG 2024-02-23 13:02:33,633 [pN:main,p:71805,tN:MainThread] Retrieved datatype module galaxy.datatypes.sequence:SequenceSplitLocations from the datatype registry for extension fqtoc. galaxy.datatypes.registry DEBUG 2024-02-23 13:02:33,633 [pN:main,p:71805,tN:MainThread] Retrieved datatype module galaxy.datatypes.tabular:Eland from the datatype registry for extension eland. galaxy.datatypes.registry DEBUG 2024-02-23 13:02:33,633 [pN:main,p:71805,tN:MainThread] Retrieved datatype module galaxy.datatypes.tabular:ElandMulti from the datatype registry for extension elandmulti. galaxy.datatypes.registry DEBUG 2024-02-23 13:02:33,633 [pN:main,p:71805,tN:MainThread] Retrieved datatype module galaxy.datatypes.tracks:GeneTrack from the datatype registry for extension genetrack. galaxy.datatypes.registry DEBUG 2024-02-23 13:02:33,634 [pN:main,p:71805,tN:MainThread] Retrieved datatype module galaxy.datatypes.interval:Gff from the datatype registry for extension gff. galaxy.datatypes.registry DEBUG 2024-02-23 13:02:33,634 [pN:main,p:71805,tN:MainThread] Retrieved datatype module galaxy.datatypes.interval:Gff3 from the datatype registry for extension gff3. galaxy.datatypes.registry DEBUG 2024-02-23 13:02:33,634 [pN:main,p:71805,tN:MainThread] Retrieved datatype module galaxy.datatypes.images:Gif from the datatype registry for extension gif. galaxy.datatypes.registry DEBUG 2024-02-23 13:02:33,634 [pN:main,p:71805,tN:MainThread] Retrieved datatype module galaxy.datatypes.images:Gmaj from the datatype registry for extension gmaj.zip. galaxy.datatypes.registry DEBUG 2024-02-23 13:02:33,634 [pN:main,p:71805,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension graph_dot. galaxy.datatypes.registry DEBUG 2024-02-23 13:02:33,634 [pN:main,p:71805,tN:MainThread] Retrieved datatype module galaxy.datatypes.interval:Gtf from the datatype registry for extension gtf. galaxy.datatypes.registry DEBUG 2024-02-23 13:02:33,634 [pN:main,p:71805,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:Binary from the datatype registry for extension toolshed.gz. galaxy.datatypes.registry DEBUG 2024-02-23 13:02:33,634 [pN:main,p:71805,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:Binary from the datatype registry for extension hdf4. galaxy.datatypes.registry DEBUG 2024-02-23 13:02:33,634 [pN:main,p:71805,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:H5 from the datatype registry for extension h5. galaxy.datatypes.registry DEBUG 2024-02-23 13:02:33,634 [pN:main,p:71805,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:H5 from the datatype registry for extension scool. galaxy.datatypes.registry DEBUG 2024-02-23 13:02:33,634 [pN:main,p:71805,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:Grib from the datatype registry for extension grib. galaxy.datatypes.registry DEBUG 2024-02-23 13:02:33,634 [pN:main,p:71805,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:Loom from the datatype registry for extension loom. galaxy.datatypes.registry DEBUG 2024-02-23 13:02:33,635 [pN:main,p:71805,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:Anndata from the datatype registry for extension h5ad. galaxy.datatypes.registry DEBUG 2024-02-23 13:02:33,635 [pN:main,p:71805,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:Visium from the datatype registry for extension visium.tar.gz. galaxy.datatypes.registry DEBUG 2024-02-23 13:02:33,635 [pN:main,p:71805,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:H5 from the datatype registry for extension mz5. galaxy.datatypes.registry DEBUG 2024-02-23 13:02:33,635 [pN:main,p:71805,tN:MainThread] Retrieved datatype module galaxy.datatypes.text:Json from the datatype registry for extension hyphy_results.json. galaxy.datatypes.registry DEBUG 2024-02-23 13:02:33,635 [pN:main,p:71805,tN:MainThread] Retrieved datatype module galaxy.datatypes.text:Json from the datatype registry for extension hivtrace. galaxy.datatypes.registry DEBUG 2024-02-23 13:02:33,635 [pN:main,p:71805,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:Cool from the datatype registry for extension cool. galaxy.datatypes.registry DEBUG 2024-02-23 13:02:33,635 [pN:main,p:71805,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:MCool from the datatype registry for extension mcool. galaxy.datatypes.registry DEBUG 2024-02-23 13:02:33,635 [pN:main,p:71805,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:H5MLM from the datatype registry for extension h5mlm. galaxy.datatypes.registry DEBUG 2024-02-23 13:02:33,635 [pN:main,p:71805,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:LudwigModel from the datatype registry for extension ludwig_model. galaxy.datatypes.registry DEBUG 2024-02-23 13:02:33,635 [pN:main,p:71805,tN:MainThread] Retrieved datatype module galaxy.datatypes.text:Html from the datatype registry for extension html. galaxy.datatypes.registry DEBUG 2024-02-23 13:02:33,635 [pN:main,p:71805,tN:MainThread] Retrieved datatype module galaxy.datatypes.text:Html from the datatype registry for extension ludwig_report.html. galaxy.datatypes.registry DEBUG 2024-02-23 13:02:33,635 [pN:main,p:71805,tN:MainThread] Retrieved datatype module galaxy.datatypes.interval:Interval from the datatype registry for extension interval. galaxy.datatypes.registry DEBUG 2024-02-23 13:02:33,635 [pN:main,p:71805,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:Binary from the datatype registry for extension jellyfish. galaxy.datatypes.registry DEBUG 2024-02-23 13:02:33,635 [pN:main,p:71805,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:Binary from the datatype registry for extension ktab. galaxy.datatypes.registry DEBUG 2024-02-23 13:02:33,636 [pN:main,p:71805,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:Binary from the datatype registry for extension hist. galaxy.datatypes.registry DEBUG 2024-02-23 13:02:33,636 [pN:main,p:71805,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:Binary from the datatype registry for extension prof. galaxy.datatypes.registry DEBUG 2024-02-23 13:02:33,688 [pN:main,p:71805,tN:MainThread] Retrieved datatype module galaxy.datatypes.isa:IsaTab from the datatype registry for extension isa-tab. galaxy.datatypes.registry DEBUG 2024-02-23 13:02:33,688 [pN:main,p:71805,tN:MainThread] Retrieved datatype module galaxy.datatypes.isa:IsaJson from the datatype registry for extension isa-json. galaxy.datatypes.registry DEBUG 2024-02-23 13:02:33,688 [pN:main,p:71805,tN:MainThread] Retrieved datatype module galaxy.datatypes.tabular:Tabular from the datatype registry for extension picard_interval_list. galaxy.datatypes.registry DEBUG 2024-02-23 13:02:33,688 [pN:main,p:71805,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension gatk_interval. galaxy.datatypes.registry DEBUG 2024-02-23 13:02:33,689 [pN:main,p:71805,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension gatk_report. galaxy.datatypes.registry DEBUG 2024-02-23 13:02:33,689 [pN:main,p:71805,tN:MainThread] Retrieved datatype module galaxy.datatypes.tabular:Tabular from the datatype registry for extension gatk_dbsnp. galaxy.datatypes.registry DEBUG 2024-02-23 13:02:33,689 [pN:main,p:71805,tN:MainThread] Retrieved datatype module galaxy.datatypes.tabular:Tabular from the datatype registry for extension gatk_tranche. galaxy.datatypes.registry DEBUG 2024-02-23 13:02:33,689 [pN:main,p:71805,tN:MainThread] Retrieved datatype module galaxy.datatypes.tabular:Tabular from the datatype registry for extension gatk_recal. galaxy.datatypes.registry DEBUG 2024-02-23 13:02:33,689 [pN:main,p:71805,tN:MainThread] Retrieved datatype module galaxy.datatypes.tabular:Tabular from the datatype registry for extension cnn. galaxy.datatypes.registry DEBUG 2024-02-23 13:02:33,689 [pN:main,p:71805,tN:MainThread] Retrieved datatype module galaxy.datatypes.tabular:Tabular from the datatype registry for extension cns. galaxy.datatypes.registry DEBUG 2024-02-23 13:02:33,689 [pN:main,p:71805,tN:MainThread] Retrieved datatype module galaxy.datatypes.tabular:Tabular from the datatype registry for extension cnr. galaxy.datatypes.registry DEBUG 2024-02-23 13:02:33,689 [pN:main,p:71805,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension hhr. galaxy.datatypes.registry DEBUG 2024-02-23 13:02:33,689 [pN:main,p:71805,tN:MainThread] Retrieved datatype module galaxy.datatypes.images:Jpg from the datatype registry for extension jpg. galaxy.datatypes.registry DEBUG 2024-02-23 13:02:33,690 [pN:main,p:71805,tN:MainThread] Retrieved datatype module galaxy.datatypes.images:Tiff from the datatype registry for extension tiff. galaxy.datatypes.registry DEBUG 2024-02-23 13:02:33,690 [pN:main,p:71805,tN:MainThread] Retrieved datatype module galaxy.datatypes.images:Tiff from the datatype registry for extension tf2. galaxy.datatypes.registry DEBUG 2024-02-23 13:02:33,690 [pN:main,p:71805,tN:MainThread] Retrieved datatype module galaxy.datatypes.images:Tiff from the datatype registry for extension tf8. galaxy.datatypes.registry DEBUG 2024-02-23 13:02:33,690 [pN:main,p:71805,tN:MainThread] Retrieved datatype module galaxy.datatypes.images:Tiff from the datatype registry for extension btf. galaxy.datatypes.registry DEBUG 2024-02-23 13:02:33,690 [pN:main,p:71805,tN:MainThread] Retrieved datatype module galaxy.datatypes.images:Tiff from the datatype registry for extension tif. galaxy.datatypes.registry DEBUG 2024-02-23 13:02:33,690 [pN:main,p:71805,tN:MainThread] Retrieved datatype module galaxy.datatypes.images:Tiff from the datatype registry for extension svs. galaxy.datatypes.registry DEBUG 2024-02-23 13:02:33,690 [pN:main,p:71805,tN:MainThread] Retrieved datatype module galaxy.datatypes.images:Tiff from the datatype registry for extension scn. galaxy.datatypes.registry DEBUG 2024-02-23 13:02:33,690 [pN:main,p:71805,tN:MainThread] Retrieved datatype module galaxy.datatypes.images:Tiff from the datatype registry for extension bif. galaxy.datatypes.registry DEBUG 2024-02-23 13:02:33,690 [pN:main,p:71805,tN:MainThread] Retrieved datatype module galaxy.datatypes.images:OMETiff from the datatype registry for extension ome.tiff. galaxy.datatypes.registry DEBUG 2024-02-23 13:02:33,690 [pN:main,p:71805,tN:MainThread] Retrieved datatype module galaxy.datatypes.images:Hamamatsu from the datatype registry for extension vms. galaxy.datatypes.registry DEBUG 2024-02-23 13:02:33,690 [pN:main,p:71805,tN:MainThread] Retrieved datatype module galaxy.datatypes.images:Hamamatsu from the datatype registry for extension vmu. galaxy.datatypes.registry DEBUG 2024-02-23 13:02:33,690 [pN:main,p:71805,tN:MainThread] Retrieved datatype module galaxy.datatypes.images:Hamamatsu from the datatype registry for extension ndpi. galaxy.datatypes.registry DEBUG 2024-02-23 13:02:33,690 [pN:main,p:71805,tN:MainThread] Retrieved datatype module galaxy.datatypes.images:Mirax from the datatype registry for extension mrxs. galaxy.datatypes.registry DEBUG 2024-02-23 13:02:33,690 [pN:main,p:71805,tN:MainThread] Retrieved datatype module galaxy.datatypes.images:Sakura from the datatype registry for extension svslide. galaxy.datatypes.registry DEBUG 2024-02-23 13:02:33,690 [pN:main,p:71805,tN:MainThread] Retrieved datatype module galaxy.datatypes.images:Bmp from the datatype registry for extension bmp. galaxy.datatypes.registry DEBUG 2024-02-23 13:02:33,691 [pN:main,p:71805,tN:MainThread] Retrieved datatype module galaxy.datatypes.images:Im from the datatype registry for extension im. galaxy.datatypes.registry DEBUG 2024-02-23 13:02:33,691 [pN:main,p:71805,tN:MainThread] Retrieved datatype module galaxy.datatypes.images:Pcd from the datatype registry for extension pcd. galaxy.datatypes.registry DEBUG 2024-02-23 13:02:33,691 [pN:main,p:71805,tN:MainThread] Retrieved datatype module galaxy.datatypes.images:Pcx from the datatype registry for extension pcx. galaxy.datatypes.registry DEBUG 2024-02-23 13:02:33,691 [pN:main,p:71805,tN:MainThread] Retrieved datatype module galaxy.datatypes.images:Ppm from the datatype registry for extension ppm. galaxy.datatypes.registry DEBUG 2024-02-23 13:02:33,691 [pN:main,p:71805,tN:MainThread] Retrieved datatype module galaxy.datatypes.images:Psd from the datatype registry for extension psd. galaxy.datatypes.registry DEBUG 2024-02-23 13:02:33,691 [pN:main,p:71805,tN:MainThread] Retrieved datatype module galaxy.datatypes.images:Xbm from the datatype registry for extension xbm. galaxy.datatypes.registry DEBUG 2024-02-23 13:02:33,691 [pN:main,p:71805,tN:MainThread] Retrieved datatype module galaxy.datatypes.images:Xpm from the datatype registry for extension xpm. galaxy.datatypes.registry DEBUG 2024-02-23 13:02:33,691 [pN:main,p:71805,tN:MainThread] Retrieved datatype module galaxy.datatypes.images:Rgb from the datatype registry for extension rgb. galaxy.datatypes.registry DEBUG 2024-02-23 13:02:33,691 [pN:main,p:71805,tN:MainThread] Retrieved datatype module galaxy.datatypes.images:Pbm from the datatype registry for extension pbm. galaxy.datatypes.registry DEBUG 2024-02-23 13:02:33,691 [pN:main,p:71805,tN:MainThread] Retrieved datatype module galaxy.datatypes.images:Pgm from the datatype registry for extension pgm. galaxy.datatypes.registry DEBUG 2024-02-23 13:02:33,691 [pN:main,p:71805,tN:MainThread] Retrieved datatype module galaxy.datatypes.images:Nrrd from the datatype registry for extension nrrd. galaxy.datatypes.registry DEBUG 2024-02-23 13:02:33,691 [pN:main,p:71805,tN:MainThread] Retrieved datatype module galaxy.datatypes.images:Nrrd from the datatype registry for extension nhdr. galaxy.datatypes.registry DEBUG 2024-02-23 13:02:33,691 [pN:main,p:71805,tN:MainThread] Retrieved datatype module galaxy.datatypes.sequence:RNADotPlotMatrix from the datatype registry for extension rna_eps. galaxy.datatypes.registry DEBUG 2024-02-23 13:02:33,692 [pN:main,p:71805,tN:MainThread] Retrieved datatype module galaxy.datatypes.qiime2:QIIME2Artifact from the datatype registry for extension qza. galaxy.datatypes.registry DEBUG 2024-02-23 13:02:33,692 [pN:main,p:71805,tN:MainThread] Retrieved datatype module galaxy.datatypes.qiime2:QIIME2Visualization from the datatype registry for extension qzv. galaxy.datatypes.registry DEBUG 2024-02-23 13:02:33,692 [pN:main,p:71805,tN:MainThread] Retrieved datatype module galaxy.datatypes.qiime2:QIIME2Metadata from the datatype registry for extension qiime2.tabular. galaxy.datatypes.registry DEBUG 2024-02-23 13:02:33,692 [pN:main,p:71805,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:CompressedZipArchive from the datatype registry for extension zip. galaxy.datatypes.registry DEBUG 2024-02-23 13:02:33,692 [pN:main,p:71805,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:CompressedZipArchive from the datatype registry for extension ncbi_genome_dataset.zip. galaxy.datatypes.registry DEBUG 2024-02-23 13:02:33,692 [pN:main,p:71805,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:CompressedArchive from the datatype registry for extension tar. galaxy.datatypes.registry DEBUG 2024-02-23 13:02:33,692 [pN:main,p:71805,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:Directory from the datatype registry for extension directory. galaxy.datatypes.registry DEBUG 2024-02-23 13:02:33,692 [pN:main,p:71805,tN:MainThread] Retrieved datatype module galaxy.datatypes.text:Yaml from the datatype registry for extension yaml. galaxy.datatypes.registry DEBUG 2024-02-23 13:02:33,692 [pN:main,p:71805,tN:MainThread] Retrieved datatype module galaxy.datatypes.tabular:Tabular from the datatype registry for extension mrm. galaxy.datatypes.registry DEBUG 2024-02-23 13:02:33,694 [pN:main,p:71805,tN:MainThread] Retrieved datatype module galaxy.datatypes.proteomics:Dta from the datatype registry for extension dta. galaxy.datatypes.registry DEBUG 2024-02-23 13:02:33,694 [pN:main,p:71805,tN:MainThread] Retrieved datatype module galaxy.datatypes.proteomics:Dta2d from the datatype registry for extension dta2d. galaxy.datatypes.registry DEBUG 2024-02-23 13:02:33,694 [pN:main,p:71805,tN:MainThread] Retrieved datatype module galaxy.datatypes.proteomics:Edta from the datatype registry for extension edta. galaxy.datatypes.registry DEBUG 2024-02-23 13:02:33,694 [pN:main,p:71805,tN:MainThread] Retrieved datatype module galaxy.datatypes.proteomics:PepXml from the datatype registry for extension pepxml. galaxy.datatypes.registry DEBUG 2024-02-23 13:02:33,694 [pN:main,p:71805,tN:MainThread] Retrieved datatype module galaxy.datatypes.proteomics:PepXml from the datatype registry for extension raw_pepxml. galaxy.datatypes.registry DEBUG 2024-02-23 13:02:33,694 [pN:main,p:71805,tN:MainThread] Retrieved datatype module galaxy.datatypes.proteomics:PepXml from the datatype registry for extension peptideprophet_pepxml. galaxy.datatypes.registry DEBUG 2024-02-23 13:02:33,694 [pN:main,p:71805,tN:MainThread] Retrieved datatype module galaxy.datatypes.proteomics:PepXml from the datatype registry for extension interprophet_pepxml. galaxy.datatypes.registry DEBUG 2024-02-23 13:02:33,694 [pN:main,p:71805,tN:MainThread] Retrieved datatype module galaxy.datatypes.proteomics:ProtXML from the datatype registry for extension protxml. galaxy.datatypes.registry DEBUG 2024-02-23 13:02:33,694 [pN:main,p:71805,tN:MainThread] Retrieved datatype module galaxy.datatypes.proteomics:ParamXml from the datatype registry for extension paramxml. galaxy.datatypes.registry DEBUG 2024-02-23 13:02:33,694 [pN:main,p:71805,tN:MainThread] Retrieved datatype module galaxy.datatypes.proteomics:Kroenik from the datatype registry for extension kroenik. galaxy.datatypes.registry DEBUG 2024-02-23 13:02:33,694 [pN:main,p:71805,tN:MainThread] Retrieved datatype module galaxy.datatypes.proteomics:PepList from the datatype registry for extension peplist. galaxy.datatypes.registry DEBUG 2024-02-23 13:02:33,695 [pN:main,p:71805,tN:MainThread] Retrieved datatype module galaxy.datatypes.proteomics:PSMS from the datatype registry for extension psms. galaxy.datatypes.registry DEBUG 2024-02-23 13:02:33,695 [pN:main,p:71805,tN:MainThread] Retrieved datatype module galaxy.datatypes.proteomics:PepXmlReport from the datatype registry for extension pepxml.tsv. galaxy.datatypes.registry DEBUG 2024-02-23 13:02:33,695 [pN:main,p:71805,tN:MainThread] Retrieved datatype module galaxy.datatypes.proteomics:ProtXmlReport from the datatype registry for extension protxml.tsv. galaxy.datatypes.registry DEBUG 2024-02-23 13:02:33,695 [pN:main,p:71805,tN:MainThread] Retrieved datatype module galaxy.datatypes.proteomics:MascotDat from the datatype registry for extension mascotdat. galaxy.datatypes.registry DEBUG 2024-02-23 13:02:33,695 [pN:main,p:71805,tN:MainThread] Retrieved datatype module galaxy.datatypes.proteomics:MzIdentML from the datatype registry for extension mzid. galaxy.datatypes.registry DEBUG 2024-02-23 13:02:33,695 [pN:main,p:71805,tN:MainThread] Retrieved datatype module galaxy.datatypes.proteomics:IdXML from the datatype registry for extension idxml. galaxy.datatypes.registry DEBUG 2024-02-23 13:02:33,695 [pN:main,p:71805,tN:MainThread] Retrieved datatype module galaxy.datatypes.proteomics:TandemXML from the datatype registry for extension tandem. galaxy.datatypes.registry DEBUG 2024-02-23 13:02:33,695 [pN:main,p:71805,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension sirius.ms. galaxy.datatypes.registry DEBUG 2024-02-23 13:02:33,695 [pN:main,p:71805,tN:MainThread] Retrieved datatype module galaxy.datatypes.proteomics:ThermoRAW from the datatype registry for extension thermo.raw. galaxy.datatypes.registry DEBUG 2024-02-23 13:02:33,695 [pN:main,p:71805,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:BafTar from the datatype registry for extension brukerbaf.d.tar. galaxy.datatypes.registry DEBUG 2024-02-23 13:02:33,695 [pN:main,p:71805,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:YepTar from the datatype registry for extension agilentbrukeryep.d.tar. galaxy.datatypes.registry DEBUG 2024-02-23 13:02:33,695 [pN:main,p:71805,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:TdfTar from the datatype registry for extension brukertdf.d.tar. galaxy.datatypes.registry DEBUG 2024-02-23 13:02:33,695 [pN:main,p:71805,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:MassHunterTar from the datatype registry for extension agilentmasshunter.d.tar. galaxy.datatypes.registry DEBUG 2024-02-23 13:02:33,695 [pN:main,p:71805,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:MassLynxTar from the datatype registry for extension watersmasslynx.raw.tar. galaxy.datatypes.registry DEBUG 2024-02-23 13:02:33,695 [pN:main,p:71805,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:WiffTar from the datatype registry for extension wiff.tar. galaxy.datatypes.registry DEBUG 2024-02-23 13:02:33,695 [pN:main,p:71805,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:Wiff2Tar from the datatype registry for extension wiff2.tar. galaxy.datatypes.registry DEBUG 2024-02-23 13:02:33,695 [pN:main,p:71805,tN:MainThread] Retrieved datatype module galaxy.datatypes.proteomics:MascotXML from the datatype registry for extension mascotxml. galaxy.datatypes.registry DEBUG 2024-02-23 13:02:33,696 [pN:main,p:71805,tN:MainThread] Retrieved datatype module galaxy.datatypes.proteomics:MzTab from the datatype registry for extension mztab. galaxy.datatypes.registry DEBUG 2024-02-23 13:02:33,696 [pN:main,p:71805,tN:MainThread] Retrieved datatype module galaxy.datatypes.proteomics:MzTab2 from the datatype registry for extension mztab2. galaxy.datatypes.registry DEBUG 2024-02-23 13:02:33,696 [pN:main,p:71805,tN:MainThread] Retrieved datatype module galaxy.datatypes.proteomics:MzML from the datatype registry for extension mzml. galaxy.datatypes.registry DEBUG 2024-02-23 13:02:33,696 [pN:main,p:71805,tN:MainThread] Retrieved datatype module galaxy.datatypes.proteomics:NmrML from the datatype registry for extension nmrml. galaxy.datatypes.registry DEBUG 2024-02-23 13:02:33,696 [pN:main,p:71805,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:Meryldb from the datatype registry for extension meryldb. galaxy.datatypes.registry DEBUG 2024-02-23 13:02:33,696 [pN:main,p:71805,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:Bref3 from the datatype registry for extension bref3. galaxy.datatypes.registry DEBUG 2024-02-23 13:02:33,696 [pN:main,p:71805,tN:MainThread] Retrieved datatype module galaxy.datatypes.proteomics:Mgf from the datatype registry for extension mgf. galaxy.datatypes.registry DEBUG 2024-02-23 13:02:33,696 [pN:main,p:71805,tN:MainThread] Retrieved datatype module galaxy.datatypes.proteomics:Wiff from the datatype registry for extension wiff. galaxy.datatypes.registry DEBUG 2024-02-23 13:02:33,696 [pN:main,p:71805,tN:MainThread] Retrieved datatype module galaxy.datatypes.proteomics:Wiff2 from the datatype registry for extension wiff2. galaxy.datatypes.registry DEBUG 2024-02-23 13:02:33,696 [pN:main,p:71805,tN:MainThread] Retrieved datatype module galaxy.datatypes.proteomics:MzXML from the datatype registry for extension mzxml. galaxy.datatypes.registry DEBUG 2024-02-23 13:02:33,696 [pN:main,p:71805,tN:MainThread] Retrieved datatype module galaxy.datatypes.proteomics:MzData from the datatype registry for extension mzdata. galaxy.datatypes.registry DEBUG 2024-02-23 13:02:33,696 [pN:main,p:71805,tN:MainThread] Retrieved datatype module galaxy.datatypes.proteomics:Ms2 from the datatype registry for extension ms2. galaxy.datatypes.registry DEBUG 2024-02-23 13:02:33,696 [pN:main,p:71805,tN:MainThread] Retrieved datatype module galaxy.datatypes.proteomics:MzQuantML from the datatype registry for extension mzq. galaxy.datatypes.registry DEBUG 2024-02-23 13:02:33,696 [pN:main,p:71805,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:SQlite from the datatype registry for extension sqlite. galaxy.datatypes.registry DEBUG 2024-02-23 13:02:33,696 [pN:main,p:71805,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:MzSQlite from the datatype registry for extension mz.sqlite. galaxy.datatypes.registry DEBUG 2024-02-23 13:02:33,696 [pN:main,p:71805,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:OSW from the datatype registry for extension osw. galaxy.datatypes.registry DEBUG 2024-02-23 13:02:33,697 [pN:main,p:71805,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:PQP from the datatype registry for extension pqp. galaxy.datatypes.registry DEBUG 2024-02-23 13:02:33,697 [pN:main,p:71805,tN:MainThread] Retrieved datatype module galaxy.datatypes.proteomics:TraML from the datatype registry for extension traml. galaxy.datatypes.registry DEBUG 2024-02-23 13:02:33,697 [pN:main,p:71805,tN:MainThread] Retrieved datatype module galaxy.datatypes.proteomics:TrafoXML from the datatype registry for extension trafoxml. galaxy.datatypes.registry DEBUG 2024-02-23 13:02:33,697 [pN:main,p:71805,tN:MainThread] Retrieved datatype module galaxy.datatypes.proteomics:FeatureXML from the datatype registry for extension featurexml. galaxy.datatypes.registry DEBUG 2024-02-23 13:02:33,697 [pN:main,p:71805,tN:MainThread] Retrieved datatype module galaxy.datatypes.proteomics:ConsensusXML from the datatype registry for extension consensusxml. galaxy.datatypes.registry DEBUG 2024-02-23 13:02:33,697 [pN:main,p:71805,tN:MainThread] Retrieved datatype module galaxy.datatypes.proteomics:UniProtXML from the datatype registry for extension uniprotxml. galaxy.datatypes.registry DEBUG 2024-02-23 13:02:33,697 [pN:main,p:71805,tN:MainThread] Retrieved datatype module galaxy.datatypes.proteomics:XquestXML from the datatype registry for extension xquest.xml. galaxy.datatypes.registry DEBUG 2024-02-23 13:02:33,697 [pN:main,p:71805,tN:MainThread] Retrieved datatype module galaxy.datatypes.proteomics:XquestSpecXML from the datatype registry for extension spec.xml. galaxy.datatypes.registry DEBUG 2024-02-23 13:02:33,697 [pN:main,p:71805,tN:MainThread] Retrieved datatype module galaxy.datatypes.proteomics:QCML from the datatype registry for extension qcml. galaxy.datatypes.registry DEBUG 2024-02-23 13:02:33,697 [pN:main,p:71805,tN:MainThread] Retrieved datatype module galaxy.datatypes.text:Json from the datatype registry for extension mzqc. galaxy.datatypes.registry DEBUG 2024-02-23 13:02:33,697 [pN:main,p:71805,tN:MainThread] Retrieved datatype module galaxy.datatypes.proteomics:Msp from the datatype registry for extension msp. galaxy.datatypes.registry DEBUG 2024-02-23 13:02:33,697 [pN:main,p:71805,tN:MainThread] Retrieved datatype module galaxy.datatypes.proteomics:SPLibNoIndex from the datatype registry for extension splib_noindex. galaxy.datatypes.registry DEBUG 2024-02-23 13:02:33,697 [pN:main,p:71805,tN:MainThread] Retrieved datatype module galaxy.datatypes.proteomics:SPLib from the datatype registry for extension splib. galaxy.datatypes.registry DEBUG 2024-02-23 13:02:33,697 [pN:main,p:71805,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:BlibSQlite from the datatype registry for extension blib. galaxy.datatypes.registry DEBUG 2024-02-23 13:02:33,697 [pN:main,p:71805,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:DlibSQlite from the datatype registry for extension dlib. galaxy.datatypes.registry DEBUG 2024-02-23 13:02:33,697 [pN:main,p:71805,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:ElibSQlite from the datatype registry for extension elib. galaxy.datatypes.registry DEBUG 2024-02-23 13:02:33,697 [pN:main,p:71805,tN:MainThread] Retrieved datatype module galaxy.datatypes.proteomics:XHunterAslFormat from the datatype registry for extension hlf. galaxy.datatypes.registry DEBUG 2024-02-23 13:02:33,698 [pN:main,p:71805,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:IdpDB from the datatype registry for extension idpdb. galaxy.datatypes.registry DEBUG 2024-02-23 13:02:33,698 [pN:main,p:71805,tN:MainThread] Retrieved datatype module galaxy.datatypes.proteomics:Sf3 from the datatype registry for extension sf3. galaxy.datatypes.registry DEBUG 2024-02-23 13:02:33,698 [pN:main,p:71805,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:Binary from the datatype registry for extension cps. galaxy.datatypes.registry DEBUG 2024-02-23 13:02:33,698 [pN:main,p:71805,tN:MainThread] Retrieved datatype module galaxy.datatypes.tabular:ConnectivityTable from the datatype registry for extension ct. galaxy.datatypes.registry DEBUG 2024-02-23 13:02:33,698 [pN:main,p:71805,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:PostgresqlArchive from the datatype registry for extension postgresql. galaxy.datatypes.registry DEBUG 2024-02-23 13:02:33,698 [pN:main,p:71805,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:MongoDBArchive from the datatype registry for extension mongodb. galaxy.datatypes.registry DEBUG 2024-02-23 13:02:33,698 [pN:main,p:71805,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:GeneNoteBook from the datatype registry for extension genenotebook. galaxy.datatypes.registry DEBUG 2024-02-23 13:02:33,698 [pN:main,p:71805,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:SearchGuiArchive from the datatype registry for extension searchgui_archive. galaxy.datatypes.registry DEBUG 2024-02-23 13:02:33,698 [pN:main,p:71805,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:Fast5Archive from the datatype registry for extension fast5.tar. galaxy.datatypes.registry DEBUG 2024-02-23 13:02:33,698 [pN:main,p:71805,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:Fast5ArchiveGz from the datatype registry for extension fast5.tar.gz. galaxy.datatypes.registry DEBUG 2024-02-23 13:02:33,698 [pN:main,p:71805,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:Fast5ArchiveBz2 from the datatype registry for extension fast5.tar.bz2. galaxy.datatypes.registry DEBUG 2024-02-23 13:02:33,698 [pN:main,p:71805,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:CompressedArchive from the datatype registry for extension peptideshaker_archive. galaxy.datatypes.registry DEBUG 2024-02-23 13:02:33,698 [pN:main,p:71805,tN:MainThread] Retrieved datatype module galaxy.datatypes.tabular:Tabular from the datatype registry for extension percin. galaxy.datatypes.registry DEBUG 2024-02-23 13:02:33,698 [pN:main,p:71805,tN:MainThread] Retrieved datatype module galaxy.datatypes.xml:GenericXml from the datatype registry for extension percout. galaxy.datatypes.registry DEBUG 2024-02-23 13:02:33,698 [pN:main,p:71805,tN:MainThread] Retrieved datatype module galaxy.datatypes.tabular:Tabular from the datatype registry for extension hardklor. galaxy.datatypes.registry DEBUG 2024-02-23 13:02:33,699 [pN:main,p:71805,tN:MainThread] Retrieved datatype module galaxy.datatypes.tabular:Tabular from the datatype registry for extension kronik. galaxy.datatypes.registry DEBUG 2024-02-23 13:02:33,699 [pN:main,p:71805,tN:MainThread] Retrieved datatype module galaxy.datatypes.proteomics:ImzML from the datatype registry for extension imzml. galaxy.datatypes.registry DEBUG 2024-02-23 13:02:33,699 [pN:main,p:71805,tN:MainThread] Retrieved datatype module galaxy.datatypes.images:Analyze75 from the datatype registry for extension analyze75. galaxy.datatypes.registry DEBUG 2024-02-23 13:02:33,699 [pN:main,p:71805,tN:MainThread] Retrieved datatype module galaxy.datatypes.images:Nifti1 from the datatype registry for extension nii1. galaxy.datatypes.registry DEBUG 2024-02-23 13:02:33,699 [pN:main,p:71805,tN:MainThread] Retrieved datatype module galaxy.datatypes.images:Nifti2 from the datatype registry for extension nii2. galaxy.datatypes.registry DEBUG 2024-02-23 13:02:33,699 [pN:main,p:71805,tN:MainThread] Retrieved datatype module galaxy.datatypes.images:Gifti from the datatype registry for extension gii. galaxy.datatypes.registry DEBUG 2024-02-23 13:02:33,699 [pN:main,p:71805,tN:MainThread] Retrieved datatype module galaxy.datatypes.images:Tck from the datatype registry for extension tck. galaxy.datatypes.registry DEBUG 2024-02-23 13:02:33,699 [pN:main,p:71805,tN:MainThread] Retrieved datatype module galaxy.datatypes.images:Trk from the datatype registry for extension trk. galaxy.datatypes.registry DEBUG 2024-02-23 13:02:33,699 [pN:main,p:71805,tN:MainThread] Retrieved datatype module galaxy.datatypes.images:Mrc2014 from the datatype registry for extension mrc. galaxy.datatypes.registry DEBUG 2024-02-23 13:02:33,699 [pN:main,p:71805,tN:MainThread] Retrieved datatype module galaxy.datatypes.images:Star from the datatype registry for extension star. galaxy.datatypes.registry DEBUG 2024-02-23 13:02:33,699 [pN:main,p:71805,tN:MainThread] Retrieved datatype module galaxy.datatypes.proteomics:PEFF from the datatype registry for extension peff. galaxy.datatypes.registry DEBUG 2024-02-23 13:02:33,699 [pN:main,p:71805,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension toml. galaxy.datatypes.registry DEBUG 2024-02-23 13:02:33,700 [pN:main,p:71805,tN:MainThread] Retrieved datatype module galaxy.datatypes.flow:FCS from the datatype registry for extension fcs. galaxy.datatypes.registry DEBUG 2024-02-23 13:02:33,700 [pN:main,p:71805,tN:MainThread] Retrieved datatype module galaxy.datatypes.tabular:Tabular from the datatype registry for extension flowtext. galaxy.datatypes.registry DEBUG 2024-02-23 13:02:33,700 [pN:main,p:71805,tN:MainThread] Retrieved datatype module galaxy.datatypes.tabular:Tabular from the datatype registry for extension flowclr. galaxy.datatypes.registry DEBUG 2024-02-23 13:02:33,700 [pN:main,p:71805,tN:MainThread] Retrieved datatype module galaxy.datatypes.tabular:Tabular from the datatype registry for extension flowmfi. galaxy.datatypes.registry DEBUG 2024-02-23 13:02:33,700 [pN:main,p:71805,tN:MainThread] Retrieved datatype module galaxy.datatypes.tabular:Tabular from the datatype registry for extension flowstat1. galaxy.datatypes.registry DEBUG 2024-02-23 13:02:33,700 [pN:main,p:71805,tN:MainThread] Retrieved datatype module galaxy.datatypes.tabular:Tabular from the datatype registry for extension flowstat2. galaxy.datatypes.registry DEBUG 2024-02-23 13:02:33,700 [pN:main,p:71805,tN:MainThread] Retrieved datatype module galaxy.datatypes.tabular:Tabular from the datatype registry for extension flowstat3. galaxy.datatypes.registry DEBUG 2024-02-23 13:02:33,700 [pN:main,p:71805,tN:MainThread] Retrieved datatype module galaxy.datatypes.tabular:Tabular from the datatype registry for extension flowscore. galaxy.datatypes.registry DEBUG 2024-02-23 13:02:33,700 [pN:main,p:71805,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:RData from the datatype registry for extension flowframe. galaxy.datatypes.registry DEBUG 2024-02-23 13:02:33,700 [pN:main,p:71805,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:RData from the datatype registry for extension fsom. galaxy.datatypes.registry DEBUG 2024-02-23 13:02:33,701 [pN:main,p:71805,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:RData from the datatype registry for extension flowset. galaxy.datatypes.registry DEBUG 2024-02-23 13:02:33,701 [pN:main,p:71805,tN:MainThread] Retrieved datatype module galaxy.datatypes.tabular:Tabular from the datatype registry for extension metacyto_clr.txt. galaxy.datatypes.registry DEBUG 2024-02-23 13:02:33,701 [pN:main,p:71805,tN:MainThread] Retrieved datatype module galaxy.datatypes.metacyto:mSummary from the datatype registry for extension metacyto_summary.txt. galaxy.datatypes.registry DEBUG 2024-02-23 13:02:33,701 [pN:main,p:71805,tN:MainThread] Retrieved datatype module galaxy.datatypes.metacyto:mStats from the datatype registry for extension metacyto_stats.txt. galaxy.datatypes.registry DEBUG 2024-02-23 13:02:33,701 [pN:main,p:71805,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:CompressedArchive from the datatype registry for extension deeptools_compute_matrix_archive. galaxy.datatypes.registry DEBUG 2024-02-23 13:02:33,701 [pN:main,p:71805,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:CompressedArchive from the datatype registry for extension deeptools_coverage_matrix. galaxy.datatypes.registry DEBUG 2024-02-23 13:02:33,701 [pN:main,p:71805,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:NetCDF from the datatype registry for extension netcdf. galaxy.datatypes.registry DEBUG 2024-02-23 13:02:33,701 [pN:main,p:71805,tN:MainThread] Retrieved datatype module galaxy.datatypes.images:Eps from the datatype registry for extension eps. galaxy.datatypes.registry DEBUG 2024-02-23 13:02:33,701 [pN:main,p:71805,tN:MainThread] Retrieved datatype module galaxy.datatypes.images:Rast from the datatype registry for extension rast. galaxy.datatypes.registry DEBUG 2024-02-23 13:02:33,701 [pN:main,p:71805,tN:MainThread] Retrieved datatype module galaxy.datatypes.images:Laj from the datatype registry for extension laj. galaxy.datatypes.registry DEBUG 2024-02-23 13:02:33,701 [pN:main,p:71805,tN:MainThread] Retrieved datatype module galaxy.datatypes.sequence:Lav from the datatype registry for extension lav. galaxy.datatypes.registry DEBUG 2024-02-23 13:02:33,702 [pN:main,p:71805,tN:MainThread] Retrieved datatype module galaxy.datatypes.sequence:Maf from the datatype registry for extension maf. galaxy.datatypes.registry DEBUG 2024-02-23 13:02:33,702 [pN:main,p:71805,tN:MainThread] Retrieved datatype module galaxy.datatypes.sequence:MafCustomTrack from the datatype registry for extension mafcustomtrack. galaxy.datatypes.registry DEBUG 2024-02-23 13:02:33,702 [pN:main,p:71805,tN:MainThread] Retrieved datatype module galaxy.datatypes.tabular:MatrixMarket from the datatype registry for extension mtx. galaxy.datatypes.registry DEBUG 2024-02-23 13:02:33,702 [pN:main,p:71805,tN:MainThread] Retrieved datatype module galaxy.datatypes.tabular:CMAP from the datatype registry for extension cmap. galaxy.datatypes.registry DEBUG 2024-02-23 13:02:33,702 [pN:main,p:71805,tN:MainThread] Retrieved datatype module galaxy.datatypes.interval:ENCODEPeak from the datatype registry for extension encodepeak. galaxy.datatypes.registry DEBUG 2024-02-23 13:02:33,702 [pN:main,p:71805,tN:MainThread] Retrieved datatype module galaxy.datatypes.images:Pdf from the datatype registry for extension pdf. galaxy.datatypes.registry DEBUG 2024-02-23 13:02:33,702 [pN:main,p:71805,tN:MainThread] Retrieved datatype module galaxy.datatypes.tabular:Pileup from the datatype registry for extension pileup. galaxy.datatypes.registry DEBUG 2024-02-23 13:02:33,702 [pN:main,p:71805,tN:MainThread] Retrieved datatype module galaxy.datatypes.tabular:Psl from the datatype registry for extension psl. galaxy.datatypes.registry DEBUG 2024-02-23 13:02:33,702 [pN:main,p:71805,tN:MainThread] Retrieved datatype module galaxy.datatypes.text:Obo from the datatype registry for extension obo. galaxy.datatypes.registry DEBUG 2024-02-23 13:02:33,702 [pN:main,p:71805,tN:MainThread] Retrieved datatype module galaxy.datatypes.xml:Owl from the datatype registry for extension owl. galaxy.datatypes.registry DEBUG 2024-02-23 13:02:33,702 [pN:main,p:71805,tN:MainThread] Retrieved datatype module galaxy.datatypes.images:Png from the datatype registry for extension png. galaxy.datatypes.registry DEBUG 2024-02-23 13:02:33,702 [pN:main,p:71805,tN:MainThread] Retrieved datatype module galaxy.datatypes.qualityscore:QualityScore from the datatype registry for extension qual. galaxy.datatypes.registry DEBUG 2024-02-23 13:02:33,702 [pN:main,p:71805,tN:MainThread] Retrieved datatype module galaxy.datatypes.qualityscore:QualityScoreSolexa from the datatype registry for extension qualsolexa. galaxy.datatypes.registry DEBUG 2024-02-23 13:02:33,702 [pN:main,p:71805,tN:MainThread] Retrieved datatype module galaxy.datatypes.qualityscore:QualityScoreIllumina from the datatype registry for extension qualillumina. galaxy.datatypes.registry DEBUG 2024-02-23 13:02:33,702 [pN:main,p:71805,tN:MainThread] Retrieved datatype module galaxy.datatypes.qualityscore:QualityScoreSOLiD from the datatype registry for extension qualsolid. galaxy.datatypes.registry DEBUG 2024-02-23 13:02:33,702 [pN:main,p:71805,tN:MainThread] Retrieved datatype module galaxy.datatypes.qualityscore:QualityScore454 from the datatype registry for extension qual454. galaxy.datatypes.registry DEBUG 2024-02-23 13:02:33,703 [pN:main,p:71805,tN:MainThread] Retrieved datatype module galaxy.datatypes.assembly:Roadmaps from the datatype registry for extension roadmaps. galaxy.datatypes.registry DEBUG 2024-02-23 13:02:33,703 [pN:main,p:71805,tN:MainThread] Retrieved datatype module galaxy.datatypes.tabular:Sam from the datatype registry for extension sam. galaxy.datatypes.registry DEBUG 2024-02-23 13:02:33,703 [pN:main,p:71805,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:Scf from the datatype registry for extension scf. galaxy.datatypes.registry DEBUG 2024-02-23 13:02:33,703 [pN:main,p:71805,tN:MainThread] Retrieved datatype module galaxy.datatypes.assembly:Sequences from the datatype registry for extension sequences. galaxy.datatypes.registry DEBUG 2024-02-23 13:02:33,703 [pN:main,p:71805,tN:MainThread] Retrieved datatype module galaxy.datatypes.text:SnpEffDb from the datatype registry for extension snpeffdb. galaxy.datatypes.registry DEBUG 2024-02-23 13:02:33,703 [pN:main,p:71805,tN:MainThread] Retrieved datatype module galaxy.datatypes.text:SnpSiftDbNSFP from the datatype registry for extension snpsiftdbnsfp. galaxy.datatypes.registry DEBUG 2024-02-23 13:02:33,703 [pN:main,p:71805,tN:MainThread] Retrieved datatype module galaxy.datatypes.tabular:Tabular from the datatype registry for extension dbnsfp.tabular. galaxy.datatypes.registry DEBUG 2024-02-23 13:02:33,703 [pN:main,p:71805,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:Sff from the datatype registry for extension sff. galaxy.datatypes.registry DEBUG 2024-02-23 13:02:33,703 [pN:main,p:71805,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:Sra from the datatype registry for extension sra. galaxy.datatypes.registry DEBUG 2024-02-23 13:02:33,703 [pN:main,p:71805,tN:MainThread] Retrieved datatype module galaxy.datatypes.tabular:SraManifest from the datatype registry for extension sra_manifest.tabular. galaxy.datatypes.registry DEBUG 2024-02-23 13:02:33,703 [pN:main,p:71805,tN:MainThread] Retrieved datatype module galaxy.datatypes.xml:GenericXml from the datatype registry for extension svg. galaxy.datatypes.registry DEBUG 2024-02-23 13:02:33,703 [pN:main,p:71805,tN:MainThread] Retrieved datatype module galaxy.datatypes.tabular:Taxonomy from the datatype registry for extension taxonomy. galaxy.datatypes.registry DEBUG 2024-02-23 13:02:33,703 [pN:main,p:71805,tN:MainThread] Retrieved datatype module galaxy.datatypes.tabular:Tabular from the datatype registry for extension tabular. galaxy.datatypes.registry DEBUG 2024-02-23 13:02:33,703 [pN:main,p:71805,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:TwoBit from the datatype registry for extension twobit. galaxy.datatypes.registry DEBUG 2024-02-23 13:02:33,704 [pN:main,p:71805,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:SQmass from the datatype registry for extension sqmass. galaxy.datatypes.registry DEBUG 2024-02-23 13:02:33,704 [pN:main,p:71805,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:GeminiSQLite from the datatype registry for extension gemini.sqlite. galaxy.datatypes.registry DEBUG 2024-02-23 13:02:33,704 [pN:main,p:71805,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:ChiraSQLite from the datatype registry for extension chira.sqlite. galaxy.datatypes.registry DEBUG 2024-02-23 13:02:33,704 [pN:main,p:71805,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:CuffDiffSQlite from the datatype registry for extension cuffdiff.sqlite. galaxy.datatypes.registry DEBUG 2024-02-23 13:02:33,704 [pN:main,p:71805,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:GAFASQLite from the datatype registry for extension gafa.sqlite. galaxy.datatypes.registry DEBUG 2024-02-23 13:02:33,704 [pN:main,p:71805,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:NcbiTaxonomySQlite from the datatype registry for extension ncbitaxonomy.sqlite. galaxy.datatypes.registry DEBUG 2024-02-23 13:02:33,704 [pN:main,p:71805,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension txt. galaxy.datatypes.registry DEBUG 2024-02-23 13:02:33,704 [pN:main,p:71805,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:LineCount from the datatype registry for extension linecount. galaxy.datatypes.registry DEBUG 2024-02-23 13:02:33,704 [pN:main,p:71805,tN:MainThread] Retrieved datatype module galaxy.datatypes.sequence:MemePsp from the datatype registry for extension memepsp. galaxy.datatypes.registry DEBUG 2024-02-23 13:02:33,704 [pN:main,p:71805,tN:MainThread] Retrieved datatype module galaxy.datatypes.xml:MEMEXml from the datatype registry for extension memexml. galaxy.datatypes.registry DEBUG 2024-02-23 13:02:33,704 [pN:main,p:71805,tN:MainThread] Retrieved datatype module galaxy.datatypes.xml:CisML from the datatype registry for extension cisml. galaxy.datatypes.registry DEBUG 2024-02-23 13:02:33,704 [pN:main,p:71805,tN:MainThread] Retrieved datatype module galaxy.datatypes.xml:GenericXml from the datatype registry for extension xml. galaxy.datatypes.registry DEBUG 2024-02-23 13:02:33,704 [pN:main,p:71805,tN:MainThread] Retrieved datatype module galaxy.datatypes.xml:GenericXml from the datatype registry for extension xsd. galaxy.datatypes.registry DEBUG 2024-02-23 13:02:33,704 [pN:main,p:71805,tN:MainThread] Retrieved datatype module galaxy.datatypes.xml:Dzi from the datatype registry for extension dzi. galaxy.datatypes.registry DEBUG 2024-02-23 13:02:33,704 [pN:main,p:71805,tN:MainThread] Retrieved datatype module galaxy.datatypes.tabular:Vcf from the datatype registry for extension vcf. galaxy.datatypes.registry DEBUG 2024-02-23 13:02:33,704 [pN:main,p:71805,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:Bcf from the datatype registry for extension bcf. galaxy.datatypes.registry DEBUG 2024-02-23 13:02:33,705 [pN:main,p:71805,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:Bcf from the datatype registry for extension bcf_bgzip. galaxy.datatypes.registry DEBUG 2024-02-23 13:02:33,705 [pN:main,p:71805,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:BcfUncompressed from the datatype registry for extension bcf_uncompressed. galaxy.datatypes.registry DEBUG 2024-02-23 13:02:33,705 [pN:main,p:71805,tN:MainThread] Retrieved datatype module galaxy.datatypes.assembly:Velvet from the datatype registry for extension velvet. galaxy.datatypes.registry DEBUG 2024-02-23 13:02:33,705 [pN:main,p:71805,tN:MainThread] Retrieved datatype module galaxy.datatypes.interval:Wiggle from the datatype registry for extension wig. galaxy.datatypes.registry DEBUG 2024-02-23 13:02:33,705 [pN:main,p:71805,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:Binary from the datatype registry for extension interval_index. galaxy.datatypes.registry DEBUG 2024-02-23 13:02:33,706 [pN:main,p:71805,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:Binary from the datatype registry for extension odgi. galaxy.datatypes.registry DEBUG 2024-02-23 13:02:33,706 [pN:main,p:71805,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:CompressedArchive from the datatype registry for extension vg. galaxy.datatypes.registry DEBUG 2024-02-23 13:02:33,706 [pN:main,p:71805,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:Binary from the datatype registry for extension xg. galaxy.datatypes.registry DEBUG 2024-02-23 13:02:33,706 [pN:main,p:71805,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:Binary from the datatype registry for extension protobuf2. galaxy.datatypes.registry DEBUG 2024-02-23 13:02:33,706 [pN:main,p:71805,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:Binary from the datatype registry for extension protobuf3. galaxy.datatypes.registry DEBUG 2024-02-23 13:02:33,706 [pN:main,p:71805,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:Binary from the datatype registry for extension onnx. galaxy.datatypes.registry DEBUG 2024-02-23 13:02:33,706 [pN:main,p:71805,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:Binary from the datatype registry for extension tabix. galaxy.datatypes.registry DEBUG 2024-02-23 13:02:33,706 [pN:main,p:71805,tN:MainThread] Retrieved datatype module galaxy.datatypes.interval:IntervalTabix from the datatype registry for extension interval_tabix.gz. galaxy.datatypes.registry DEBUG 2024-02-23 13:02:33,706 [pN:main,p:71805,tN:MainThread] Retrieved datatype module galaxy.datatypes.interval:JuicerMediumTabix from the datatype registry for extension juicer_medium_tabix.gz. galaxy.datatypes.registry DEBUG 2024-02-23 13:02:33,706 [pN:main,p:71805,tN:MainThread] Retrieved datatype module galaxy.datatypes.interval:BedTabix from the datatype registry for extension bed_tabix.gz. galaxy.datatypes.registry DEBUG 2024-02-23 13:02:33,706 [pN:main,p:71805,tN:MainThread] Retrieved datatype module galaxy.datatypes.interval:GffTabix from the datatype registry for extension gff_tabix.gz. galaxy.datatypes.registry DEBUG 2024-02-23 13:02:33,706 [pN:main,p:71805,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:Binary from the datatype registry for extension bgzip. galaxy.datatypes.registry DEBUG 2024-02-23 13:02:33,706 [pN:main,p:71805,tN:MainThread] Retrieved datatype module galaxy.datatypes.tabular:VcfGz from the datatype registry for extension vcf_bgzip. galaxy.datatypes.registry DEBUG 2024-02-23 13:02:33,707 [pN:main,p:71805,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:Binary from the datatype registry for extension bus. galaxy.datatypes.registry DEBUG 2024-02-23 13:02:33,707 [pN:main,p:71805,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:Binary from the datatype registry for extension kallisto.idx. galaxy.datatypes.registry DEBUG 2024-02-23 13:02:33,707 [pN:main,p:71805,tN:MainThread] Retrieved datatype module galaxy.datatypes.xml:Phyloxml from the datatype registry for extension phyloxml. galaxy.datatypes.registry DEBUG 2024-02-23 13:02:33,707 [pN:main,p:71805,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:Newick from the datatype registry for extension newick. galaxy.datatypes.registry DEBUG 2024-02-23 13:02:33,707 [pN:main,p:71805,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:Newick from the datatype registry for extension nhx. galaxy.datatypes.registry DEBUG 2024-02-23 13:02:33,707 [pN:main,p:71805,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:Nexus from the datatype registry for extension nex. galaxy.datatypes.registry DEBUG 2024-02-23 13:02:33,707 [pN:main,p:71805,tN:MainThread] Retrieved datatype module galaxy.datatypes.text:IQTree from the datatype registry for extension iqtree. galaxy.datatypes.registry DEBUG 2024-02-23 13:02:33,708 [pN:main,p:71805,tN:MainThread] Retrieved datatype module galaxy.datatypes.mothur:SquareDistanceMatrix from the datatype registry for extension mldist. galaxy.datatypes.registry DEBUG 2024-02-23 13:02:33,709 [pN:main,p:71805,tN:MainThread] Retrieved datatype module galaxy.datatypes.genetics:Affybatch from the datatype registry for extension affybatch. galaxy.datatypes.registry DEBUG 2024-02-23 13:02:33,710 [pN:main,p:71805,tN:MainThread] Retrieved datatype module galaxy.datatypes.genetics:Eigenstratgeno from the datatype registry for extension eigenstratgeno. galaxy.datatypes.registry DEBUG 2024-02-23 13:02:33,710 [pN:main,p:71805,tN:MainThread] Retrieved datatype module galaxy.datatypes.genetics:Eigenstratpca from the datatype registry for extension eigenstratpca. galaxy.datatypes.registry DEBUG 2024-02-23 13:02:33,710 [pN:main,p:71805,tN:MainThread] Retrieved datatype module galaxy.datatypes.genetics:Eset from the datatype registry for extension eset. galaxy.datatypes.registry DEBUG 2024-02-23 13:02:33,710 [pN:main,p:71805,tN:MainThread] Retrieved datatype module galaxy.datatypes.genetics:Fped from the datatype registry for extension fped. galaxy.datatypes.registry DEBUG 2024-02-23 13:02:33,710 [pN:main,p:71805,tN:MainThread] Retrieved datatype module galaxy.datatypes.genetics:Fphe from the datatype registry for extension fphe. galaxy.datatypes.registry DEBUG 2024-02-23 13:02:33,710 [pN:main,p:71805,tN:MainThread] Retrieved datatype module galaxy.datatypes.genetics:GenomeGraphs from the datatype registry for extension gg. galaxy.datatypes.registry DEBUG 2024-02-23 13:02:33,710 [pN:main,p:71805,tN:MainThread] Retrieved datatype module galaxy.datatypes.genetics:ldIndep from the datatype registry for extension ldindep. galaxy.datatypes.registry DEBUG 2024-02-23 13:02:33,710 [pN:main,p:71805,tN:MainThread] Retrieved datatype module galaxy.datatypes.genetics:MAlist from the datatype registry for extension malist. galaxy.datatypes.registry DEBUG 2024-02-23 13:02:33,710 [pN:main,p:71805,tN:MainThread] Retrieved datatype module galaxy.datatypes.genetics:Lped from the datatype registry for extension lped. galaxy.datatypes.registry DEBUG 2024-02-23 13:02:33,710 [pN:main,p:71805,tN:MainThread] Retrieved datatype module galaxy.datatypes.genetics:Pbed from the datatype registry for extension pbed. galaxy.datatypes.registry DEBUG 2024-02-23 13:02:33,710 [pN:main,p:71805,tN:MainThread] Retrieved datatype module galaxy.datatypes.genetics:Pheno from the datatype registry for extension pheno. galaxy.datatypes.registry DEBUG 2024-02-23 13:02:33,710 [pN:main,p:71805,tN:MainThread] Retrieved datatype module galaxy.datatypes.genetics:Pphe from the datatype registry for extension pphe. galaxy.datatypes.registry DEBUG 2024-02-23 13:02:33,711 [pN:main,p:71805,tN:MainThread] Retrieved datatype module galaxy.datatypes.genetics:RexpBase from the datatype registry for extension rexpbase. galaxy.datatypes.registry DEBUG 2024-02-23 13:02:33,711 [pN:main,p:71805,tN:MainThread] Retrieved datatype module galaxy.datatypes.genetics:Rgenetics from the datatype registry for extension rgenetics. galaxy.datatypes.registry DEBUG 2024-02-23 13:02:33,711 [pN:main,p:71805,tN:MainThread] Retrieved datatype module galaxy.datatypes.genetics:Snptest from the datatype registry for extension snptest. galaxy.datatypes.registry DEBUG 2024-02-23 13:02:33,711 [pN:main,p:71805,tN:MainThread] Retrieved datatype module galaxy.datatypes.genetics:SNPMatrix from the datatype registry for extension snpmatrix. galaxy.datatypes.registry DEBUG 2024-02-23 13:02:33,711 [pN:main,p:71805,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:ExcelXls from the datatype registry for extension xls. galaxy.datatypes.registry DEBUG 2024-02-23 13:02:33,711 [pN:main,p:71805,tN:MainThread] Retrieved datatype module galaxy.datatypes.text:Ipynb from the datatype registry for extension ipynb. galaxy.datatypes.registry DEBUG 2024-02-23 13:02:33,711 [pN:main,p:71805,tN:MainThread] Retrieved datatype module galaxy.datatypes.text:Json from the datatype registry for extension json. galaxy.datatypes.registry DEBUG 2024-02-23 13:02:33,711 [pN:main,p:71805,tN:MainThread] Retrieved datatype module galaxy.datatypes.text:ExpressionJson from the datatype registry for extension expression.json. galaxy.datatypes.registry DEBUG 2024-02-23 13:02:33,711 [pN:main,p:71805,tN:MainThread] Retrieved datatype module galaxy.datatypes.graph:Xgmml from the datatype registry for extension xgmml. galaxy.datatypes.registry DEBUG 2024-02-23 13:02:33,712 [pN:main,p:71805,tN:MainThread] Retrieved datatype module galaxy.datatypes.graph:Sif from the datatype registry for extension sif. galaxy.datatypes.registry DEBUG 2024-02-23 13:02:33,712 [pN:main,p:71805,tN:MainThread] Retrieved datatype module galaxy.datatypes.triples:Triples from the datatype registry for extension triples. galaxy.datatypes.registry DEBUG 2024-02-23 13:02:33,712 [pN:main,p:71805,tN:MainThread] Retrieved datatype module galaxy.datatypes.triples:HDT from the datatype registry for extension hdt. galaxy.datatypes.registry DEBUG 2024-02-23 13:02:33,712 [pN:main,p:71805,tN:MainThread] Retrieved datatype module galaxy.datatypes.triples:NTriples from the datatype registry for extension nt. galaxy.datatypes.registry DEBUG 2024-02-23 13:02:33,712 [pN:main,p:71805,tN:MainThread] Retrieved datatype module galaxy.datatypes.triples:N3 from the datatype registry for extension n3. galaxy.datatypes.registry DEBUG 2024-02-23 13:02:33,712 [pN:main,p:71805,tN:MainThread] Retrieved datatype module galaxy.datatypes.triples:Turtle from the datatype registry for extension ttl. galaxy.datatypes.registry DEBUG 2024-02-23 13:02:33,712 [pN:main,p:71805,tN:MainThread] Retrieved datatype module galaxy.datatypes.triples:Rdf from the datatype registry for extension rdf. galaxy.datatypes.registry DEBUG 2024-02-23 13:02:33,712 [pN:main,p:71805,tN:MainThread] Retrieved datatype module galaxy.datatypes.triples:Jsonld from the datatype registry for extension jsonld. galaxy.datatypes.registry DEBUG 2024-02-23 13:02:33,713 [pN:main,p:71805,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:ExcelXls from the datatype registry for extension excel.xls. galaxy.datatypes.registry DEBUG 2024-02-23 13:02:33,713 [pN:main,p:71805,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:Xlsx from the datatype registry for extension xlsx. galaxy.datatypes.registry DEBUG 2024-02-23 13:02:33,713 [pN:main,p:71805,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:Binary from the datatype registry for extension docx. galaxy.datatypes.registry DEBUG 2024-02-23 13:02:33,713 [pN:main,p:71805,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension btwisted. galaxy.datatypes.registry DEBUG 2024-02-23 13:02:33,713 [pN:main,p:71805,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension cai. galaxy.datatypes.registry DEBUG 2024-02-23 13:02:33,713 [pN:main,p:71805,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension cat_db. galaxy.datatypes.registry DEBUG 2024-02-23 13:02:33,713 [pN:main,p:71805,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension charge. galaxy.datatypes.registry DEBUG 2024-02-23 13:02:33,713 [pN:main,p:71805,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension checktrans. galaxy.datatypes.registry DEBUG 2024-02-23 13:02:33,713 [pN:main,p:71805,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension chips. galaxy.datatypes.registry DEBUG 2024-02-23 13:02:33,713 [pN:main,p:71805,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension codcmp. galaxy.datatypes.registry DEBUG 2024-02-23 13:02:33,713 [pN:main,p:71805,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension coderet. galaxy.datatypes.registry DEBUG 2024-02-23 13:02:33,713 [pN:main,p:71805,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension compseq. galaxy.datatypes.registry DEBUG 2024-02-23 13:02:33,714 [pN:main,p:71805,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension cpgplot. galaxy.datatypes.registry DEBUG 2024-02-23 13:02:33,714 [pN:main,p:71805,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension cpgreport. galaxy.datatypes.registry DEBUG 2024-02-23 13:02:33,714 [pN:main,p:71805,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension cusp. galaxy.datatypes.registry DEBUG 2024-02-23 13:02:33,714 [pN:main,p:71805,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension cut. galaxy.datatypes.registry DEBUG 2024-02-23 13:02:33,714 [pN:main,p:71805,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension dan. galaxy.datatypes.registry DEBUG 2024-02-23 13:02:33,714 [pN:main,p:71805,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension digest. galaxy.datatypes.registry DEBUG 2024-02-23 13:02:33,714 [pN:main,p:71805,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension dreg. galaxy.datatypes.registry DEBUG 2024-02-23 13:02:33,714 [pN:main,p:71805,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension einverted. galaxy.datatypes.registry DEBUG 2024-02-23 13:02:33,714 [pN:main,p:71805,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension epestfind. galaxy.datatypes.registry DEBUG 2024-02-23 13:02:33,714 [pN:main,p:71805,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension equicktandem. galaxy.datatypes.registry DEBUG 2024-02-23 13:02:33,714 [pN:main,p:71805,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension est2genome. galaxy.datatypes.registry DEBUG 2024-02-23 13:02:33,714 [pN:main,p:71805,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension etandem. galaxy.datatypes.registry DEBUG 2024-02-23 13:02:33,714 [pN:main,p:71805,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension freak. galaxy.datatypes.registry DEBUG 2024-02-23 13:02:33,714 [pN:main,p:71805,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension fuzznuc. galaxy.datatypes.registry DEBUG 2024-02-23 13:02:33,715 [pN:main,p:71805,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension fuzzpro. galaxy.datatypes.registry DEBUG 2024-02-23 13:02:33,715 [pN:main,p:71805,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension fuzztran. galaxy.datatypes.registry DEBUG 2024-02-23 13:02:33,715 [pN:main,p:71805,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension garnier. galaxy.datatypes.registry DEBUG 2024-02-23 13:02:33,715 [pN:main,p:71805,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension geecee. galaxy.datatypes.registry DEBUG 2024-02-23 13:02:33,715 [pN:main,p:71805,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension helixturnhelix. galaxy.datatypes.registry DEBUG 2024-02-23 13:02:33,715 [pN:main,p:71805,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension hmoment. galaxy.datatypes.registry DEBUG 2024-02-23 13:02:33,715 [pN:main,p:71805,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension isochore. galaxy.datatypes.registry DEBUG 2024-02-23 13:02:33,715 [pN:main,p:71805,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension match. galaxy.datatypes.registry DEBUG 2024-02-23 13:02:33,715 [pN:main,p:71805,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension nametable. galaxy.datatypes.registry DEBUG 2024-02-23 13:02:33,715 [pN:main,p:71805,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension needle. galaxy.datatypes.registry DEBUG 2024-02-23 13:02:33,715 [pN:main,p:71805,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension newcpgreport. galaxy.datatypes.registry DEBUG 2024-02-23 13:02:33,715 [pN:main,p:71805,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension newcpgseek. galaxy.datatypes.registry DEBUG 2024-02-23 13:02:33,715 [pN:main,p:71805,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension noreturn. galaxy.datatypes.registry DEBUG 2024-02-23 13:02:33,715 [pN:main,p:71805,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension palindrome. galaxy.datatypes.registry DEBUG 2024-02-23 13:02:33,716 [pN:main,p:71805,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension pepcoil. galaxy.datatypes.registry DEBUG 2024-02-23 13:02:33,716 [pN:main,p:71805,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension pepinfo. galaxy.datatypes.registry DEBUG 2024-02-23 13:02:33,716 [pN:main,p:71805,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension pepstats. galaxy.datatypes.registry DEBUG 2024-02-23 13:02:33,716 [pN:main,p:71805,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension polydot. galaxy.datatypes.registry DEBUG 2024-02-23 13:02:33,716 [pN:main,p:71805,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension preg. galaxy.datatypes.registry DEBUG 2024-02-23 13:02:33,716 [pN:main,p:71805,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension prettyseq. galaxy.datatypes.registry DEBUG 2024-02-23 13:02:33,716 [pN:main,p:71805,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension primersearch. galaxy.datatypes.registry DEBUG 2024-02-23 13:02:33,716 [pN:main,p:71805,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension showfeat. galaxy.datatypes.registry DEBUG 2024-02-23 13:02:33,716 [pN:main,p:71805,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension showorf. galaxy.datatypes.registry DEBUG 2024-02-23 13:02:33,716 [pN:main,p:71805,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension sixpack. galaxy.datatypes.registry DEBUG 2024-02-23 13:02:33,716 [pN:main,p:71805,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension strider. galaxy.datatypes.registry DEBUG 2024-02-23 13:02:33,716 [pN:main,p:71805,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension supermatcher. galaxy.datatypes.registry DEBUG 2024-02-23 13:02:33,716 [pN:main,p:71805,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension syco. galaxy.datatypes.registry DEBUG 2024-02-23 13:02:33,716 [pN:main,p:71805,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension textsearch. galaxy.datatypes.registry DEBUG 2024-02-23 13:02:33,717 [pN:main,p:71805,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension vectorstrip. galaxy.datatypes.registry DEBUG 2024-02-23 13:02:33,717 [pN:main,p:71805,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension wobble. galaxy.datatypes.registry DEBUG 2024-02-23 13:02:33,717 [pN:main,p:71805,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension wordcount. galaxy.datatypes.registry DEBUG 2024-02-23 13:02:33,717 [pN:main,p:71805,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension dbmotif. galaxy.datatypes.registry DEBUG 2024-02-23 13:02:33,717 [pN:main,p:71805,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension diffseq. galaxy.datatypes.registry DEBUG 2024-02-23 13:02:33,717 [pN:main,p:71805,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension excel. galaxy.datatypes.registry DEBUG 2024-02-23 13:02:33,717 [pN:main,p:71805,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension feattable. galaxy.datatypes.registry DEBUG 2024-02-23 13:02:33,717 [pN:main,p:71805,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension motif. galaxy.datatypes.registry DEBUG 2024-02-23 13:02:33,717 [pN:main,p:71805,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension regions. galaxy.datatypes.registry DEBUG 2024-02-23 13:02:33,717 [pN:main,p:71805,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension seqtable. galaxy.datatypes.registry DEBUG 2024-02-23 13:02:33,717 [pN:main,p:71805,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension simple. galaxy.datatypes.registry DEBUG 2024-02-23 13:02:33,717 [pN:main,p:71805,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension table. galaxy.datatypes.registry DEBUG 2024-02-23 13:02:33,717 [pN:main,p:71805,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension tagseq. galaxy.datatypes.registry DEBUG 2024-02-23 13:02:33,717 [pN:main,p:71805,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension acedb. galaxy.datatypes.registry DEBUG 2024-02-23 13:02:33,718 [pN:main,p:71805,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension clustal. galaxy.datatypes.registry DEBUG 2024-02-23 13:02:33,718 [pN:main,p:71805,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension codata. galaxy.datatypes.registry DEBUG 2024-02-23 13:02:33,718 [pN:main,p:71805,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension embl. galaxy.datatypes.registry DEBUG 2024-02-23 13:02:33,718 [pN:main,p:71805,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension fitch. galaxy.datatypes.registry DEBUG 2024-02-23 13:02:33,718 [pN:main,p:71805,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension gcg. galaxy.datatypes.registry DEBUG 2024-02-23 13:02:33,718 [pN:main,p:71805,tN:MainThread] Retrieved datatype module galaxy.datatypes.sequence:Genbank from the datatype registry for extension genbank. galaxy.datatypes.registry DEBUG 2024-02-23 13:02:33,718 [pN:main,p:71805,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension hennig86. galaxy.datatypes.registry DEBUG 2024-02-23 13:02:33,718 [pN:main,p:71805,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension ig. galaxy.datatypes.registry DEBUG 2024-02-23 13:02:33,718 [pN:main,p:71805,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension jackknifer. galaxy.datatypes.registry DEBUG 2024-02-23 13:02:33,718 [pN:main,p:71805,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension jackknifernon. galaxy.datatypes.registry DEBUG 2024-02-23 13:02:33,718 [pN:main,p:71805,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension mega. galaxy.datatypes.registry DEBUG 2024-02-23 13:02:33,718 [pN:main,p:71805,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension meganon. galaxy.datatypes.registry DEBUG 2024-02-23 13:02:33,718 [pN:main,p:71805,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension ncbi. galaxy.datatypes.registry DEBUG 2024-02-23 13:02:33,719 [pN:main,p:71805,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension nexus. galaxy.datatypes.registry DEBUG 2024-02-23 13:02:33,719 [pN:main,p:71805,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension nexusnon. galaxy.datatypes.registry DEBUG 2024-02-23 13:02:33,719 [pN:main,p:71805,tN:MainThread] Retrieved datatype module galaxy.datatypes.phylip:Phylip from the datatype registry for extension phylip. galaxy.datatypes.registry DEBUG 2024-02-23 13:02:33,719 [pN:main,p:71805,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension phylipnon. galaxy.datatypes.registry DEBUG 2024-02-23 13:02:33,719 [pN:main,p:71805,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension pir. galaxy.datatypes.registry DEBUG 2024-02-23 13:02:33,719 [pN:main,p:71805,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension staden. galaxy.datatypes.registry DEBUG 2024-02-23 13:02:33,719 [pN:main,p:71805,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension swiss. galaxy.datatypes.registry DEBUG 2024-02-23 13:02:33,720 [pN:main,p:71805,tN:MainThread] Retrieved datatype module galaxy.datatypes.msa:Msf from the datatype registry for extension msf. galaxy.datatypes.registry DEBUG 2024-02-23 13:02:33,720 [pN:main,p:71805,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension markx0. galaxy.datatypes.registry DEBUG 2024-02-23 13:02:33,720 [pN:main,p:71805,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension markx1. galaxy.datatypes.registry DEBUG 2024-02-23 13:02:33,720 [pN:main,p:71805,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension markx10. galaxy.datatypes.registry DEBUG 2024-02-23 13:02:33,720 [pN:main,p:71805,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension markx2. galaxy.datatypes.registry DEBUG 2024-02-23 13:02:33,720 [pN:main,p:71805,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension markx3. galaxy.datatypes.registry DEBUG 2024-02-23 13:02:33,720 [pN:main,p:71805,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension pair. galaxy.datatypes.registry DEBUG 2024-02-23 13:02:33,720 [pN:main,p:71805,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension score. galaxy.datatypes.registry DEBUG 2024-02-23 13:02:33,720 [pN:main,p:71805,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension srs. galaxy.datatypes.registry DEBUG 2024-02-23 13:02:33,721 [pN:main,p:71805,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension srspair. galaxy.datatypes.registry DEBUG 2024-02-23 13:02:33,721 [pN:main,p:71805,tN:MainThread] Retrieved datatype module galaxy.datatypes.annotation:SnapHmm from the datatype registry for extension snaphmm. galaxy.datatypes.registry DEBUG 2024-02-23 13:02:33,721 [pN:main,p:71805,tN:MainThread] Retrieved datatype module galaxy.datatypes.annotation:Augustus from the datatype registry for extension augustus. galaxy.datatypes.registry DEBUG 2024-02-23 13:02:33,721 [pN:main,p:71805,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:ICM from the datatype registry for extension icm. galaxy.datatypes.registry DEBUG 2024-02-23 13:02:33,721 [pN:main,p:71805,tN:MainThread] Retrieved datatype module galaxy.datatypes.msa:InfernalCM from the datatype registry for extension cm. galaxy.datatypes.registry DEBUG 2024-02-23 13:02:33,721 [pN:main,p:71805,tN:MainThread] Retrieved datatype module galaxy.datatypes.msa:Hmmer2 from the datatype registry for extension hmm2. galaxy.datatypes.registry DEBUG 2024-02-23 13:02:33,721 [pN:main,p:71805,tN:MainThread] Retrieved datatype module galaxy.datatypes.msa:Hmmer3 from the datatype registry for extension hmm3. galaxy.datatypes.registry DEBUG 2024-02-23 13:02:33,721 [pN:main,p:71805,tN:MainThread] Retrieved datatype module galaxy.datatypes.msa:Stockholm_1_0 from the datatype registry for extension stockholm. galaxy.datatypes.registry DEBUG 2024-02-23 13:02:33,721 [pN:main,p:71805,tN:MainThread] Retrieved datatype module galaxy.datatypes.msa:MauveXmfa from the datatype registry for extension xmfa. galaxy.datatypes.registry DEBUG 2024-02-23 13:02:33,722 [pN:main,p:71805,tN:MainThread] Retrieved datatype module galaxy.datatypes.microarrays:Cel from the datatype registry for extension cel. galaxy.datatypes.registry DEBUG 2024-02-23 13:02:33,722 [pN:main,p:71805,tN:MainThread] Retrieved datatype module galaxy.datatypes.microarrays:Gpr from the datatype registry for extension gpr. galaxy.datatypes.registry DEBUG 2024-02-23 13:02:33,722 [pN:main,p:71805,tN:MainThread] Retrieved datatype module galaxy.datatypes.microarrays:Gal from the datatype registry for extension gal. galaxy.datatypes.registry DEBUG 2024-02-23 13:02:33,722 [pN:main,p:71805,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:RDS from the datatype registry for extension rds. galaxy.datatypes.registry DEBUG 2024-02-23 13:02:33,722 [pN:main,p:71805,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:RDS from the datatype registry for extension phyloseq. galaxy.datatypes.registry DEBUG 2024-02-23 13:02:33,722 [pN:main,p:71805,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:RData from the datatype registry for extension rdata. galaxy.datatypes.registry DEBUG 2024-02-23 13:02:33,722 [pN:main,p:71805,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:RData from the datatype registry for extension rdata.sce. galaxy.datatypes.registry DEBUG 2024-02-23 13:02:33,722 [pN:main,p:71805,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:RData from the datatype registry for extension rdata.xcms.raw. galaxy.datatypes.registry DEBUG 2024-02-23 13:02:33,722 [pN:main,p:71805,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:RData from the datatype registry for extension rdata.msnbase.raw. galaxy.datatypes.registry DEBUG 2024-02-23 13:02:33,722 [pN:main,p:71805,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:RData from the datatype registry for extension rdata.xcms.findchrompeaks. galaxy.datatypes.registry DEBUG 2024-02-23 13:02:33,722 [pN:main,p:71805,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:RData from the datatype registry for extension rdata.xcms.group. galaxy.datatypes.registry DEBUG 2024-02-23 13:02:33,722 [pN:main,p:71805,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:RData from the datatype registry for extension rdata.xcms.retcor. galaxy.datatypes.registry DEBUG 2024-02-23 13:02:33,723 [pN:main,p:71805,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:RData from the datatype registry for extension rdata.xcms.fillpeaks. galaxy.datatypes.registry DEBUG 2024-02-23 13:02:33,723 [pN:main,p:71805,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:RData from the datatype registry for extension rdata.camera.positive. galaxy.datatypes.registry DEBUG 2024-02-23 13:02:33,723 [pN:main,p:71805,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:RData from the datatype registry for extension rdata.camera.negative. galaxy.datatypes.registry DEBUG 2024-02-23 13:02:33,723 [pN:main,p:71805,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:RData from the datatype registry for extension rdata.camera.quick. galaxy.datatypes.registry DEBUG 2024-02-23 13:02:33,723 [pN:main,p:71805,tN:MainThread] Retrieved datatype module galaxy.datatypes.hdf5:HDF5SummarizedExperiment from the datatype registry for extension rdata.se. galaxy.datatypes.registry DEBUG 2024-02-23 13:02:33,723 [pN:main,p:71805,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:Binary from the datatype registry for extension rdock_as. galaxy.datatypes.registry DEBUG 2024-02-23 13:02:33,723 [pN:main,p:71805,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:OxliCountGraph from the datatype registry for extension oxlicg. galaxy.datatypes.registry DEBUG 2024-02-23 13:02:33,723 [pN:main,p:71805,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:OxliNodeGraph from the datatype registry for extension oxling. galaxy.datatypes.registry DEBUG 2024-02-23 13:02:33,723 [pN:main,p:71805,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:OxliTagSet from the datatype registry for extension oxlits. galaxy.datatypes.registry DEBUG 2024-02-23 13:02:33,723 [pN:main,p:71805,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:OxliStopTags from the datatype registry for extension oxlist. galaxy.datatypes.registry DEBUG 2024-02-23 13:02:33,723 [pN:main,p:71805,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:OxliSubset from the datatype registry for extension oxliss. galaxy.datatypes.registry DEBUG 2024-02-23 13:02:33,723 [pN:main,p:71805,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:OxliGraphLabels from the datatype registry for extension oxligl. galaxy.datatypes.registry DEBUG 2024-02-23 13:02:33,724 [pN:main,p:71805,tN:MainThread] Retrieved datatype module galaxy.datatypes.constructive_solid_geometry:STL from the datatype registry for extension stl. galaxy.datatypes.registry DEBUG 2024-02-23 13:02:33,724 [pN:main,p:71805,tN:MainThread] Retrieved datatype module galaxy.datatypes.constructive_solid_geometry:PlyAscii from the datatype registry for extension plyascii. galaxy.datatypes.registry DEBUG 2024-02-23 13:02:33,724 [pN:main,p:71805,tN:MainThread] Retrieved datatype module galaxy.datatypes.constructive_solid_geometry:PlyBinary from the datatype registry for extension plybinary. galaxy.datatypes.registry DEBUG 2024-02-23 13:02:33,724 [pN:main,p:71805,tN:MainThread] Retrieved datatype module galaxy.datatypes.constructive_solid_geometry:VtkAscii from the datatype registry for extension vtkascii. galaxy.datatypes.registry DEBUG 2024-02-23 13:02:33,725 [pN:main,p:71805,tN:MainThread] Retrieved datatype module galaxy.datatypes.constructive_solid_geometry:VtkBinary from the datatype registry for extension vtkbinary. galaxy.datatypes.registry DEBUG 2024-02-23 13:02:33,725 [pN:main,p:71805,tN:MainThread] Retrieved datatype module galaxy.datatypes.text:Biom1 from the datatype registry for extension biom1. galaxy.datatypes.registry DEBUG 2024-02-23 13:02:33,725 [pN:main,p:71805,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:Biom2 from the datatype registry for extension biom2. galaxy.datatypes.registry DEBUG 2024-02-23 13:02:33,725 [pN:main,p:71805,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:MashSketch from the datatype registry for extension msh. galaxy.datatypes.registry DEBUG 2024-02-23 13:02:33,725 [pN:main,p:71805,tN:MainThread] Retrieved datatype module galaxy.datatypes.interval:ScIdx from the datatype registry for extension scidx. galaxy.datatypes.registry DEBUG 2024-02-23 13:02:33,726 [pN:main,p:71805,tN:MainThread] Retrieved datatype module galaxy.datatypes.molecules:SMILES from the datatype registry for extension smi. galaxy.datatypes.registry DEBUG 2024-02-23 13:02:33,726 [pN:main,p:71805,tN:MainThread] Retrieved datatype module galaxy.datatypes.molecules:SDF from the datatype registry for extension sdf. galaxy.datatypes.registry DEBUG 2024-02-23 13:02:33,726 [pN:main,p:71805,tN:MainThread] Retrieved datatype module galaxy.datatypes.molecules:InChI from the datatype registry for extension inchi. galaxy.datatypes.registry DEBUG 2024-02-23 13:02:33,726 [pN:main,p:71805,tN:MainThread] Retrieved datatype module galaxy.datatypes.molecules:MOL from the datatype registry for extension mol. galaxy.datatypes.registry DEBUG 2024-02-23 13:02:33,726 [pN:main,p:71805,tN:MainThread] Retrieved datatype module galaxy.datatypes.molecules:MOL2 from the datatype registry for extension mol2. galaxy.datatypes.registry DEBUG 2024-02-23 13:02:33,726 [pN:main,p:71805,tN:MainThread] Retrieved datatype module galaxy.datatypes.molecules:CML from the datatype registry for extension cml. galaxy.datatypes.registry DEBUG 2024-02-23 13:02:33,726 [pN:main,p:71805,tN:MainThread] Retrieved datatype module galaxy.datatypes.molecules:FPS from the datatype registry for extension fps. galaxy.datatypes.registry DEBUG 2024-02-23 13:02:33,727 [pN:main,p:71805,tN:MainThread] Retrieved datatype module galaxy.datatypes.molecules:OBFS from the datatype registry for extension obfs. galaxy.datatypes.registry DEBUG 2024-02-23 13:02:33,727 [pN:main,p:71805,tN:MainThread] Retrieved datatype module galaxy.datatypes.molecules:DRF from the datatype registry for extension drf. galaxy.datatypes.registry DEBUG 2024-02-23 13:02:33,727 [pN:main,p:71805,tN:MainThread] Retrieved datatype module galaxy.datatypes.molecules:PHAR from the datatype registry for extension phar. galaxy.datatypes.registry DEBUG 2024-02-23 13:02:33,727 [pN:main,p:71805,tN:MainThread] Retrieved datatype module galaxy.datatypes.molecules:PDB from the datatype registry for extension pdb. galaxy.datatypes.registry DEBUG 2024-02-23 13:02:33,727 [pN:main,p:71805,tN:MainThread] Retrieved datatype module galaxy.datatypes.molecules:PDBQT from the datatype registry for extension pdbqt. galaxy.datatypes.registry DEBUG 2024-02-23 13:02:33,727 [pN:main,p:71805,tN:MainThread] Retrieved datatype module galaxy.datatypes.molecules:PQR from the datatype registry for extension pqr. galaxy.datatypes.registry DEBUG 2024-02-23 13:02:33,727 [pN:main,p:71805,tN:MainThread] Retrieved datatype module galaxy.datatypes.molecules:Cell from the datatype registry for extension cell. galaxy.datatypes.registry DEBUG 2024-02-23 13:02:33,727 [pN:main,p:71805,tN:MainThread] Retrieved datatype module galaxy.datatypes.molecules:CIF from the datatype registry for extension cif. galaxy.datatypes.registry DEBUG 2024-02-23 13:02:33,727 [pN:main,p:71805,tN:MainThread] Retrieved datatype module galaxy.datatypes.molecules:XYZ from the datatype registry for extension xyz. galaxy.datatypes.registry DEBUG 2024-02-23 13:02:33,727 [pN:main,p:71805,tN:MainThread] Retrieved datatype module galaxy.datatypes.molecules:ExtendedXYZ from the datatype registry for extension extxyz. galaxy.datatypes.registry DEBUG 2024-02-23 13:02:33,727 [pN:main,p:71805,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:Trr from the datatype registry for extension trr. galaxy.datatypes.registry DEBUG 2024-02-23 13:02:33,727 [pN:main,p:71805,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:Dcd from the datatype registry for extension dcd. galaxy.datatypes.registry DEBUG 2024-02-23 13:02:33,727 [pN:main,p:71805,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension top. galaxy.datatypes.registry DEBUG 2024-02-23 13:02:33,727 [pN:main,p:71805,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension prmtop. galaxy.datatypes.registry DEBUG 2024-02-23 13:02:33,728 [pN:main,p:71805,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension itp. galaxy.datatypes.registry DEBUG 2024-02-23 13:02:33,728 [pN:main,p:71805,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension mdp. galaxy.datatypes.registry DEBUG 2024-02-23 13:02:33,728 [pN:main,p:71805,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension ndx. galaxy.datatypes.registry DEBUG 2024-02-23 13:02:33,728 [pN:main,p:71805,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension xvg. galaxy.datatypes.registry DEBUG 2024-02-23 13:02:33,728 [pN:main,p:71805,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:Xtc from the datatype registry for extension xtc. galaxy.datatypes.registry DEBUG 2024-02-23 13:02:33,728 [pN:main,p:71805,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:Cpt from the datatype registry for extension cpt. galaxy.datatypes.registry DEBUG 2024-02-23 13:02:33,728 [pN:main,p:71805,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:Edr from the datatype registry for extension edr. galaxy.datatypes.registry DEBUG 2024-02-23 13:02:33,728 [pN:main,p:71805,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:Binary from the datatype registry for extension tpr. galaxy.datatypes.registry DEBUG 2024-02-23 13:02:33,728 [pN:main,p:71805,tN:MainThread] Retrieved datatype module galaxy.datatypes.molecules:GRO from the datatype registry for extension gro. galaxy.datatypes.registry DEBUG 2024-02-23 13:02:33,728 [pN:main,p:71805,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension inpcrd. galaxy.datatypes.registry DEBUG 2024-02-23 13:02:33,728 [pN:main,p:71805,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:Vel from the datatype registry for extension vel. galaxy.datatypes.registry DEBUG 2024-02-23 13:02:33,728 [pN:main,p:71805,tN:MainThread] Retrieved datatype module galaxy.datatypes.molecules:grd from the datatype registry for extension grd. galaxy.datatypes.registry DEBUG 2024-02-23 13:02:33,728 [pN:main,p:71805,tN:MainThread] Retrieved datatype module galaxy.datatypes.molecules:grdtgz from the datatype registry for extension grd.tgz. galaxy.datatypes.registry DEBUG 2024-02-23 13:02:33,728 [pN:main,p:71805,tN:MainThread] Retrieved datatype module galaxy.datatypes.mothur:Otu from the datatype registry for extension mothur.otu. galaxy.datatypes.registry DEBUG 2024-02-23 13:02:33,729 [pN:main,p:71805,tN:MainThread] Retrieved datatype module galaxy.datatypes.mothur:Otu from the datatype registry for extension mothur.list. galaxy.datatypes.registry DEBUG 2024-02-23 13:02:33,729 [pN:main,p:71805,tN:MainThread] Retrieved datatype module galaxy.datatypes.mothur:Sabund from the datatype registry for extension mothur.sabund. galaxy.datatypes.registry DEBUG 2024-02-23 13:02:33,729 [pN:main,p:71805,tN:MainThread] Retrieved datatype module galaxy.datatypes.mothur:Sabund from the datatype registry for extension mothur.rabund. galaxy.datatypes.registry DEBUG 2024-02-23 13:02:33,729 [pN:main,p:71805,tN:MainThread] Retrieved datatype module galaxy.datatypes.mothur:GroupAbund from the datatype registry for extension mothur.shared. galaxy.datatypes.registry DEBUG 2024-02-23 13:02:33,729 [pN:main,p:71805,tN:MainThread] Retrieved datatype module galaxy.datatypes.mothur:GroupAbund from the datatype registry for extension mothur.relabund. galaxy.datatypes.registry DEBUG 2024-02-23 13:02:33,729 [pN:main,p:71805,tN:MainThread] Retrieved datatype module galaxy.datatypes.mothur:Names from the datatype registry for extension mothur.names. galaxy.datatypes.registry DEBUG 2024-02-23 13:02:33,729 [pN:main,p:71805,tN:MainThread] Retrieved datatype module galaxy.datatypes.mothur:Group from the datatype registry for extension mothur.design. galaxy.datatypes.registry DEBUG 2024-02-23 13:02:33,729 [pN:main,p:71805,tN:MainThread] Retrieved datatype module galaxy.datatypes.mothur:Summary from the datatype registry for extension mothur.summary. galaxy.datatypes.registry DEBUG 2024-02-23 13:02:33,729 [pN:main,p:71805,tN:MainThread] Retrieved datatype module galaxy.datatypes.mothur:Group from the datatype registry for extension mothur.groups. galaxy.datatypes.registry DEBUG 2024-02-23 13:02:33,729 [pN:main,p:71805,tN:MainThread] Retrieved datatype module galaxy.datatypes.mothur:Oligos from the datatype registry for extension mothur.oligos. galaxy.datatypes.registry DEBUG 2024-02-23 13:02:33,729 [pN:main,p:71805,tN:MainThread] Retrieved datatype module galaxy.datatypes.sequence:Fasta from the datatype registry for extension mothur.align. galaxy.datatypes.registry DEBUG 2024-02-23 13:02:33,729 [pN:main,p:71805,tN:MainThread] Retrieved datatype module galaxy.datatypes.mothur:AccNos from the datatype registry for extension mothur.accnos. galaxy.datatypes.registry DEBUG 2024-02-23 13:02:33,729 [pN:main,p:71805,tN:MainThread] Retrieved datatype module galaxy.datatypes.mothur:AccNos from the datatype registry for extension mothur.otulabels. galaxy.datatypes.registry DEBUG 2024-02-23 13:02:33,730 [pN:main,p:71805,tN:MainThread] Retrieved datatype module galaxy.datatypes.tabular:Tabular from the datatype registry for extension mothur.otu.corr. galaxy.datatypes.registry DEBUG 2024-02-23 13:02:33,730 [pN:main,p:71805,tN:MainThread] Retrieved datatype module galaxy.datatypes.mothur:SecondaryStructureMap from the datatype registry for extension mothur.map. galaxy.datatypes.registry DEBUG 2024-02-23 13:02:33,730 [pN:main,p:71805,tN:MainThread] Retrieved datatype module galaxy.datatypes.mothur:AlignCheck from the datatype registry for extension mothur.align.check. galaxy.datatypes.registry DEBUG 2024-02-23 13:02:33,730 [pN:main,p:71805,tN:MainThread] Retrieved datatype module galaxy.datatypes.mothur:AlignReport from the datatype registry for extension mothur.align.report. galaxy.datatypes.registry DEBUG 2024-02-23 13:02:33,730 [pN:main,p:71805,tN:MainThread] Retrieved datatype module galaxy.datatypes.mothur:LaneMask from the datatype registry for extension mothur.filter. galaxy.datatypes.registry DEBUG 2024-02-23 13:02:33,730 [pN:main,p:71805,tN:MainThread] Retrieved datatype module galaxy.datatypes.mothur:DistanceMatrix from the datatype registry for extension mothur.dist. galaxy.datatypes.registry DEBUG 2024-02-23 13:02:33,730 [pN:main,p:71805,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension mothur.tre. galaxy.datatypes.registry DEBUG 2024-02-23 13:02:33,730 [pN:main,p:71805,tN:MainThread] Retrieved datatype module galaxy.datatypes.mothur:PairwiseDistanceMatrix from the datatype registry for extension mothur.pair.dist. galaxy.datatypes.registry DEBUG 2024-02-23 13:02:33,730 [pN:main,p:71805,tN:MainThread] Retrieved datatype module galaxy.datatypes.mothur:SquareDistanceMatrix from the datatype registry for extension mothur.square.dist. galaxy.datatypes.registry DEBUG 2024-02-23 13:02:33,730 [pN:main,p:71805,tN:MainThread] Retrieved datatype module galaxy.datatypes.mothur:LowerTriangleDistanceMatrix from the datatype registry for extension mothur.lower.dist. galaxy.datatypes.registry DEBUG 2024-02-23 13:02:33,730 [pN:main,p:71805,tN:MainThread] Retrieved datatype module galaxy.datatypes.mothur:RefTaxonomy from the datatype registry for extension mothur.ref.taxonomy. galaxy.datatypes.registry DEBUG 2024-02-23 13:02:33,730 [pN:main,p:71805,tN:MainThread] Retrieved datatype module galaxy.datatypes.mothur:RefTaxonomy from the datatype registry for extension mothur.seq.taxonomy. galaxy.datatypes.registry DEBUG 2024-02-23 13:02:33,730 [pN:main,p:71805,tN:MainThread] Retrieved datatype module galaxy.datatypes.mothur:RefTaxonomy from the datatype registry for extension mothur.rdp.taxonomy. galaxy.datatypes.registry DEBUG 2024-02-23 13:02:33,730 [pN:main,p:71805,tN:MainThread] Retrieved datatype module galaxy.datatypes.mothur:ConsensusTaxonomy from the datatype registry for extension mothur.cons.taxonomy. galaxy.datatypes.registry DEBUG 2024-02-23 13:02:33,731 [pN:main,p:71805,tN:MainThread] Retrieved datatype module galaxy.datatypes.mothur:TaxonomySummary from the datatype registry for extension mothur.tax.summary. galaxy.datatypes.registry DEBUG 2024-02-23 13:02:33,731 [pN:main,p:71805,tN:MainThread] Retrieved datatype module galaxy.datatypes.mothur:Frequency from the datatype registry for extension mothur.freq. galaxy.datatypes.registry DEBUG 2024-02-23 13:02:33,731 [pN:main,p:71805,tN:MainThread] Retrieved datatype module galaxy.datatypes.mothur:Quantile from the datatype registry for extension mothur.quan. galaxy.datatypes.registry DEBUG 2024-02-23 13:02:33,731 [pN:main,p:71805,tN:MainThread] Retrieved datatype module galaxy.datatypes.mothur:Quantile from the datatype registry for extension mothur.filtered.quan. galaxy.datatypes.registry DEBUG 2024-02-23 13:02:33,731 [pN:main,p:71805,tN:MainThread] Retrieved datatype module galaxy.datatypes.mothur:Quantile from the datatype registry for extension mothur.masked.quan. galaxy.datatypes.registry DEBUG 2024-02-23 13:02:33,731 [pN:main,p:71805,tN:MainThread] Retrieved datatype module galaxy.datatypes.mothur:Quantile from the datatype registry for extension mothur.filtered.masked.quan. galaxy.datatypes.registry DEBUG 2024-02-23 13:02:33,731 [pN:main,p:71805,tN:MainThread] Retrieved datatype module galaxy.datatypes.mothur:Axes from the datatype registry for extension mothur.axes. galaxy.datatypes.registry DEBUG 2024-02-23 13:02:33,731 [pN:main,p:71805,tN:MainThread] Retrieved datatype module galaxy.datatypes.mothur:SffFlow from the datatype registry for extension mothur.sff.flow. galaxy.datatypes.registry DEBUG 2024-02-23 13:02:33,731 [pN:main,p:71805,tN:MainThread] Retrieved datatype module galaxy.datatypes.mothur:CountTable from the datatype registry for extension mothur.count_table. galaxy.datatypes.registry DEBUG 2024-02-23 13:02:33,731 [pN:main,p:71805,tN:MainThread] Retrieved datatype module galaxy.datatypes.neo4j:Neo4jDB from the datatype registry for extension neostore. galaxy.datatypes.registry DEBUG 2024-02-23 13:02:33,732 [pN:main,p:71805,tN:MainThread] Retrieved datatype module galaxy.datatypes.neo4j:Neo4jDBzip from the datatype registry for extension neostore.zip. galaxy.datatypes.registry DEBUG 2024-02-23 13:02:33,732 [pN:main,p:71805,tN:MainThread] Retrieved datatype module galaxy.datatypes.tracks:UCSCTrackHub from the datatype registry for extension trackhub. galaxy.datatypes.registry DEBUG 2024-02-23 13:02:33,732 [pN:main,p:71805,tN:MainThread] Retrieved datatype module galaxy.datatypes.blast:BlastXml from the datatype registry for extension blastxml. galaxy.datatypes.registry DEBUG 2024-02-23 13:02:33,732 [pN:main,p:71805,tN:MainThread] Retrieved datatype module galaxy.datatypes.blast:BlastNucDb from the datatype registry for extension blastdbn. galaxy.datatypes.registry DEBUG 2024-02-23 13:02:33,732 [pN:main,p:71805,tN:MainThread] Retrieved datatype module galaxy.datatypes.blast:BlastProtDb from the datatype registry for extension blastdbp. galaxy.datatypes.registry DEBUG 2024-02-23 13:02:33,732 [pN:main,p:71805,tN:MainThread] Retrieved datatype module galaxy.datatypes.blast:BlastDomainDb from the datatype registry for extension blastdbd. galaxy.datatypes.registry DEBUG 2024-02-23 13:02:33,732 [pN:main,p:71805,tN:MainThread] Retrieved datatype module galaxy.datatypes.blast:LastDb from the datatype registry for extension lastdb. galaxy.datatypes.registry DEBUG 2024-02-23 13:02:33,733 [pN:main,p:71805,tN:MainThread] Retrieved datatype module galaxy.datatypes.blast:BlastNucDb5 from the datatype registry for extension blastdbn5. galaxy.datatypes.registry DEBUG 2024-02-23 13:02:33,733 [pN:main,p:71805,tN:MainThread] Retrieved datatype module galaxy.datatypes.blast:BlastProtDb5 from the datatype registry for extension blastdbp5. galaxy.datatypes.registry DEBUG 2024-02-23 13:02:33,733 [pN:main,p:71805,tN:MainThread] Retrieved datatype module galaxy.datatypes.blast:BlastDomainDb5 from the datatype registry for extension blastdbd5. galaxy.datatypes.registry DEBUG 2024-02-23 13:02:33,733 [pN:main,p:71805,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:GenericAsn1 from the datatype registry for extension maskinfo-asn1. galaxy.datatypes.registry DEBUG 2024-02-23 13:02:33,733 [pN:main,p:71805,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:GenericAsn1Binary from the datatype registry for extension maskinfo-asn1-binary. galaxy.datatypes.registry DEBUG 2024-02-23 13:02:33,733 [pN:main,p:71805,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:GenericAsn1 from the datatype registry for extension pssm-asn1. galaxy.datatypes.registry DEBUG 2024-02-23 13:02:33,733 [pN:main,p:71805,tN:MainThread] Retrieved datatype module galaxy.datatypes.plant_tribes:PlantTribesKsComponents from the datatype registry for extension ptkscmp. galaxy.datatypes.registry DEBUG 2024-02-23 13:02:33,733 [pN:main,p:71805,tN:MainThread] Retrieved datatype module galaxy.datatypes.plant_tribes:Smat from the datatype registry for extension smat. galaxy.datatypes.registry DEBUG 2024-02-23 13:02:33,733 [pN:main,p:71805,tN:MainThread] Retrieved datatype module galaxy.datatypes.genetics:GenotypeMatrix from the datatype registry for extension alohomora_gts. galaxy.datatypes.registry DEBUG 2024-02-23 13:02:33,734 [pN:main,p:71805,tN:MainThread] Retrieved datatype module galaxy.datatypes.tabular:Tabular from the datatype registry for extension alohomora_map. galaxy.datatypes.registry DEBUG 2024-02-23 13:02:33,734 [pN:main,p:71805,tN:MainThread] Retrieved datatype module galaxy.datatypes.tabular:Tabular from the datatype registry for extension alohomora_maf. galaxy.datatypes.registry DEBUG 2024-02-23 13:02:33,734 [pN:main,p:71805,tN:MainThread] Retrieved datatype module galaxy.datatypes.tabular:Tabular from the datatype registry for extension alohomora_ped. galaxy.datatypes.registry DEBUG 2024-02-23 13:02:33,734 [pN:main,p:71805,tN:MainThread] Retrieved datatype module galaxy.datatypes.tabular:Tabular from the datatype registry for extension linkage_pedin. galaxy.datatypes.registry DEBUG 2024-02-23 13:02:33,734 [pN:main,p:71805,tN:MainThread] Retrieved datatype module galaxy.datatypes.genetics:DataIn from the datatype registry for extension linkage_datain. galaxy.datatypes.registry DEBUG 2024-02-23 13:02:33,734 [pN:main,p:71805,tN:MainThread] Retrieved datatype module galaxy.datatypes.genetics:MarkerMap from the datatype registry for extension linkage_map. galaxy.datatypes.registry DEBUG 2024-02-23 13:02:33,734 [pN:main,p:71805,tN:MainThread] Retrieved datatype module galaxy.datatypes.tabular:Tabular from the datatype registry for extension allegro_ihaplo. galaxy.datatypes.registry DEBUG 2024-02-23 13:02:33,734 [pN:main,p:71805,tN:MainThread] Retrieved datatype module galaxy.datatypes.tabular:Tabular from the datatype registry for extension allegro_descent. galaxy.datatypes.registry DEBUG 2024-02-23 13:02:33,734 [pN:main,p:71805,tN:MainThread] Retrieved datatype module galaxy.datatypes.genetics:AllegroLOD from the datatype registry for extension allegro_fparam. galaxy.datatypes.registry DEBUG 2024-02-23 13:02:33,734 [pN:main,p:71805,tN:MainThread] Retrieved datatype module galaxy.datatypes.genetics:IdeasPre from the datatype registry for extension ideaspre. galaxy.datatypes.registry DEBUG 2024-02-23 13:02:33,734 [pN:main,p:71805,tN:MainThread] Retrieved datatype module galaxy.datatypes.xml:Sbml from the datatype registry for extension sbml. galaxy.datatypes.registry DEBUG 2024-02-23 13:02:33,735 [pN:main,p:71805,tN:MainThread] Retrieved datatype module galaxy.datatypes.spaln:SpalnNuclDb from the datatype registry for extension spalndbnp. galaxy.datatypes.registry DEBUG 2024-02-23 13:02:33,735 [pN:main,p:71805,tN:MainThread] Retrieved datatype module galaxy.datatypes.spaln:SpalnProtDb from the datatype registry for extension spalndba. galaxy.datatypes.registry DEBUG 2024-02-23 13:02:33,735 [pN:main,p:71805,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:RDS from the datatype registry for extension dada2_dada. galaxy.datatypes.registry DEBUG 2024-02-23 13:02:33,735 [pN:main,p:71805,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:RDS from the datatype registry for extension dada2_errorrates. galaxy.datatypes.registry DEBUG 2024-02-23 13:02:33,736 [pN:main,p:71805,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:RDS from the datatype registry for extension dada2_mergepairs. galaxy.datatypes.registry DEBUG 2024-02-23 13:02:33,736 [pN:main,p:71805,tN:MainThread] Retrieved datatype module galaxy.datatypes.tabular:Tabular from the datatype registry for extension dada2_sequencetable. galaxy.datatypes.registry DEBUG 2024-02-23 13:02:33,736 [pN:main,p:71805,tN:MainThread] Retrieved datatype module galaxy.datatypes.tabular:Tabular from the datatype registry for extension dada2_uniques. galaxy.datatypes.registry DEBUG 2024-02-23 13:02:33,736 [pN:main,p:71805,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:RDS from the datatype registry for extension ampvis2. galaxy.datatypes.registry DEBUG 2024-02-23 13:02:33,736 [pN:main,p:71805,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:Binary from the datatype registry for extension ckpt. galaxy.datatypes.registry DEBUG 2024-02-23 13:02:33,736 [pN:main,p:71805,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:Binary from the datatype registry for extension tgz. galaxy.datatypes.registry DEBUG 2024-02-23 13:02:33,737 [pN:main,p:71805,tN:MainThread] Retrieved datatype module galaxy.datatypes.media:Wav from the datatype registry for extension wav. galaxy.datatypes.registry DEBUG 2024-02-23 13:02:33,737 [pN:main,p:71805,tN:MainThread] Retrieved datatype module galaxy.datatypes.media:Mp3 from the datatype registry for extension mp3. galaxy.datatypes.registry DEBUG 2024-02-23 13:02:33,738 [pN:main,p:71805,tN:MainThread] Retrieved datatype module galaxy.datatypes.media:Mkv from the datatype registry for extension mkv. galaxy.datatypes.registry DEBUG 2024-02-23 13:02:33,738 [pN:main,p:71805,tN:MainThread] Retrieved datatype module galaxy.datatypes.media:Mp4 from the datatype registry for extension mp4. galaxy.datatypes.registry DEBUG 2024-02-23 13:02:33,738 [pN:main,p:71805,tN:MainThread] Retrieved datatype module galaxy.datatypes.media:Flv from the datatype registry for extension flv. galaxy.datatypes.registry DEBUG 2024-02-23 13:02:33,738 [pN:main,p:71805,tN:MainThread] Retrieved datatype module galaxy.datatypes.media:Mpg from the datatype registry for extension mpg. galaxy.datatypes.registry DEBUG 2024-02-23 13:02:33,738 [pN:main,p:71805,tN:MainThread] Retrieved datatype module galaxy.datatypes.speech:TextGrid from the datatype registry for extension textgrid. galaxy.datatypes.registry DEBUG 2024-02-23 13:02:33,738 [pN:main,p:71805,tN:MainThread] Retrieved datatype module galaxy.datatypes.speech:BPF from the datatype registry for extension par. galaxy.datatypes.registry DEBUG 2024-02-23 13:02:33,738 [pN:main,p:71805,tN:MainThread] Retrieved datatype module galaxy.datatypes.tabular:Tabular from the datatype registry for extension ffindex. galaxy.datatypes.registry DEBUG 2024-02-23 13:02:33,738 [pN:main,p:71805,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:Data from the datatype registry for extension ffdata. galaxy.datatypes.registry DEBUG 2024-02-23 13:02:33,738 [pN:main,p:71805,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:Pretext from the datatype registry for extension pretext. galaxy.datatypes.registry DEBUG 2024-02-23 13:02:33,738 [pN:main,p:71805,tN:MainThread] Retrieved datatype module galaxy.datatypes.text:Html from the datatype registry for extension immuneml_receptors.html. galaxy.datatypes.registry DEBUG 2024-02-23 13:02:33,738 [pN:main,p:71805,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:HexrdMaterials from the datatype registry for extension hexrd.materials.h5. galaxy.datatypes.registry DEBUG 2024-02-23 13:02:33,738 [pN:main,p:71805,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:Npz from the datatype registry for extension npz. galaxy.datatypes.registry DEBUG 2024-02-23 13:02:33,739 [pN:main,p:71805,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:HexrdImagesNpz from the datatype registry for extension hexrd.images.npz. galaxy.datatypes.registry DEBUG 2024-02-23 13:02:33,739 [pN:main,p:71805,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:HexrdEtaOmeNpz from the datatype registry for extension hexrd.eta_ome.npz. galaxy.datatypes.registry DEBUG 2024-02-23 13:02:33,739 [pN:main,p:71805,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:Npz from the datatype registry for extension hexrd.scored_orientations.npz. galaxy.datatypes.registry DEBUG 2024-02-23 13:02:33,739 [pN:main,p:71805,tN:MainThread] Retrieved datatype module galaxy.datatypes.tabular:Tabular from the datatype registry for extension hexrd.accepted_orientations. galaxy.datatypes.registry DEBUG 2024-02-23 13:02:33,739 [pN:main,p:71805,tN:MainThread] Retrieved datatype module galaxy.datatypes.text:Yaml from the datatype registry for extension hexrd.yml. galaxy.datatypes.registry DEBUG 2024-02-23 13:02:33,739 [pN:main,p:71805,tN:MainThread] Retrieved datatype module galaxy.datatypes.constructive_solid_geometry:NeperTess from the datatype registry for extension neper.tess. galaxy.datatypes.registry DEBUG 2024-02-23 13:02:33,739 [pN:main,p:71805,tN:MainThread] Retrieved datatype module galaxy.datatypes.constructive_solid_geometry:NeperTesr from the datatype registry for extension neper.tesr. galaxy.datatypes.registry DEBUG 2024-02-23 13:02:33,739 [pN:main,p:71805,tN:MainThread] Retrieved datatype module galaxy.datatypes.constructive_solid_geometry:NeperPoints from the datatype registry for extension neper.points. galaxy.datatypes.registry DEBUG 2024-02-23 13:02:33,739 [pN:main,p:71805,tN:MainThread] Retrieved datatype module galaxy.datatypes.constructive_solid_geometry:NeperPointsTabular from the datatype registry for extension neper.points.tsv. galaxy.datatypes.registry DEBUG 2024-02-23 13:02:33,739 [pN:main,p:71805,tN:MainThread] Retrieved datatype module galaxy.datatypes.constructive_solid_geometry:NeperMultiScaleCell from the datatype registry for extension neper.mscell. galaxy.datatypes.registry DEBUG 2024-02-23 13:02:33,739 [pN:main,p:71805,tN:MainThread] Retrieved datatype module galaxy.datatypes.constructive_solid_geometry:GmshMsh from the datatype registry for extension gmsh.msh. galaxy.datatypes.registry DEBUG 2024-02-23 13:02:33,739 [pN:main,p:71805,tN:MainThread] Retrieved datatype module galaxy.datatypes.constructive_solid_geometry:GmshGeo from the datatype registry for extension gmsh.geo. galaxy.datatypes.registry DEBUG 2024-02-23 13:02:33,739 [pN:main,p:71805,tN:MainThread] Retrieved datatype module galaxy.datatypes.constructive_solid_geometry:ZsetGeof from the datatype registry for extension zset.geof. galaxy.datatypes.registry DEBUG 2024-02-23 13:02:33,739 [pN:main,p:71805,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:Binary from the datatype registry for extension stl. galaxy.datatypes.registry DEBUG 2024-02-23 13:02:33,739 [pN:main,p:71805,tN:MainThread] Overriding conflicting datatype with extension 'stl', using datatype from /scratch/rico/galaxy/lib/galaxy/config/sample/datatypes_conf.xml.sample. galaxy.datatypes.registry DEBUG 2024-02-23 13:02:33,740 [pN:main,p:71805,tN:MainThread] Retrieved datatype module galaxy.datatypes.text:Text from the datatype registry for extension pov. galaxy.datatypes.registry DEBUG 2024-02-23 13:02:33,740 [pN:main,p:71805,tN:MainThread] Retrieved datatype module galaxy.datatypes.text:PithyaResult from the datatype registry for extension pithya.result. galaxy.datatypes.registry DEBUG 2024-02-23 13:02:33,740 [pN:main,p:71805,tN:MainThread] Retrieved datatype module galaxy.datatypes.text:PithyaProperty from the datatype registry for extension pithya.property. galaxy.datatypes.registry DEBUG 2024-02-23 13:02:33,740 [pN:main,p:71805,tN:MainThread] Retrieved datatype module galaxy.datatypes.text:PithyaModel from the datatype registry for extension pithya.model. galaxy.datatypes.registry DEBUG 2024-02-23 13:02:33,740 [pN:main,p:71805,tN:MainThread] Retrieved datatype module galaxy.datatypes.text:BCSLts from the datatype registry for extension bcsl.ts. galaxy.datatypes.registry DEBUG 2024-02-23 13:02:33,740 [pN:main,p:71805,tN:MainThread] Retrieved datatype module galaxy.datatypes.text:BCSLmodel from the datatype registry for extension bcsl.model. galaxy.datatypes.registry DEBUG 2024-02-23 13:02:33,740 [pN:main,p:71805,tN:MainThread] Retrieved datatype module galaxy.datatypes.text:StormSample from the datatype registry for extension storm.sample. galaxy.datatypes.registry DEBUG 2024-02-23 13:02:33,740 [pN:main,p:71805,tN:MainThread] Retrieved datatype module galaxy.datatypes.text:StormCheck from the datatype registry for extension storm.check. galaxy.datatypes.registry DEBUG 2024-02-23 13:02:33,740 [pN:main,p:71805,tN:MainThread] Retrieved datatype module galaxy.datatypes.text:CTLresult from the datatype registry for extension ctl.result. galaxy.datatypes.registry DEBUG 2024-02-23 13:02:33,740 [pN:main,p:71805,tN:MainThread] Retrieved datatype module galaxy.datatypes.text:Castep from the datatype registry for extension castep. galaxy.datatypes.registry DEBUG 2024-02-23 13:02:33,740 [pN:main,p:71805,tN:MainThread] Retrieved datatype module galaxy.datatypes.text:Param from the datatype registry for extension param. galaxy.datatypes.registry DEBUG 2024-02-23 13:02:33,740 [pN:main,p:71805,tN:MainThread] Retrieved datatype module galaxy.datatypes.text:FormattedDensity from the datatype registry for extension den_fmt. galaxy.datatypes.registry DEBUG 2024-02-23 13:02:33,741 [pN:main,p:71805,tN:MainThread] Retrieved datatype module galaxy.datatypes.larch:AthenaProject from the datatype registry for extension prj. galaxy.datatypes.registry DEBUG 2024-02-23 13:02:33,741 [pN:main,p:71805,tN:MainThread] Retrieved datatype module galaxy.datatypes.larch:FEFFInput from the datatype registry for extension inp. galaxy.datatypes.registry DEBUG 2024-02-23 13:02:33,741 [pN:main,p:71805,tN:MainThread] Retrieved datatype module galaxy.datatypes.tabular:CSV from the datatype registry for extension sp. galaxy.datatypes.registry DEBUG 2024-02-23 13:02:33,741 [pN:main,p:71805,tN:MainThread] Retrieved datatype module galaxy.datatypes.tabular:CSV from the datatype registry for extension gds. galaxy.datatypes.registry DEBUG 2024-02-23 13:02:33,741 [pN:main,p:71805,tN:MainThread] Retrieved datatype module galaxy.datatypes.tabular:CSV from the datatype registry for extension feff. galaxy.datatypes.registry DEBUG 2024-02-23 13:02:33,741 [pN:main,p:71805,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension feffit. galaxy.datatypes.registry DEBUG 2024-02-23 13:02:33,741 [pN:main,p:71805,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:Binary from the datatype registry for extension bil. galaxy.datatypes.registry DEBUG 2024-02-23 13:02:33,741 [pN:main,p:71805,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension hdr. galaxy.datatypes.registry DEBUG 2024-02-23 13:02:33,741 [pN:main,p:71805,tN:MainThread] Retrieved datatype module galaxy.datatypes.gis:Shapefile from the datatype registry for extension shp. galaxy.datatypes.registry DEBUG 2024-02-23 13:02:33,742 [pN:main,p:71805,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:FITS from the datatype registry for extension fits. galaxy.datatypes.registry DEBUG 2024-02-23 13:02:33,742 [pN:main,p:71805,tN:MainThread] Retrieved datatype module galaxy.datatypes.chain:Chain from the datatype registry for extension chain. galaxy.datatypes.registry DEBUG 2024-02-23 13:02:33,742 [pN:main,p:71805,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.plant_tribes:PlantTribesKsComponents' galaxy.datatypes.registry DEBUG 2024-02-23 13:02:33,742 [pN:main,p:71805,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.plant_tribes:Smat' galaxy.datatypes.registry DEBUG 2024-02-23 13:02:33,742 [pN:main,p:71805,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.mothur:Sabund' galaxy.datatypes.registry DEBUG 2024-02-23 13:02:33,742 [pN:main,p:71805,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.mothur:Otu' galaxy.datatypes.registry DEBUG 2024-02-23 13:02:33,742 [pN:main,p:71805,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.mothur:GroupAbund' galaxy.datatypes.registry DEBUG 2024-02-23 13:02:33,742 [pN:main,p:71805,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.mothur:SecondaryStructureMap' galaxy.datatypes.registry DEBUG 2024-02-23 13:02:33,742 [pN:main,p:71805,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.mothur:LowerTriangleDistanceMatrix' galaxy.datatypes.registry DEBUG 2024-02-23 13:02:33,742 [pN:main,p:71805,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.mothur:SquareDistanceMatrix' galaxy.datatypes.registry DEBUG 2024-02-23 13:02:33,742 [pN:main,p:71805,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.mothur:PairwiseDistanceMatrix' galaxy.datatypes.registry DEBUG 2024-02-23 13:02:33,742 [pN:main,p:71805,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.mothur:Oligos' galaxy.datatypes.registry DEBUG 2024-02-23 13:02:33,742 [pN:main,p:71805,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.mothur:Quantile' galaxy.datatypes.registry DEBUG 2024-02-23 13:02:33,742 [pN:main,p:71805,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.mothur:Frequency' galaxy.datatypes.registry DEBUG 2024-02-23 13:02:33,742 [pN:main,p:71805,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.mothur:LaneMask' galaxy.datatypes.registry DEBUG 2024-02-23 13:02:33,742 [pN:main,p:71805,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.mothur:RefTaxonomy' galaxy.datatypes.registry DEBUG 2024-02-23 13:02:33,742 [pN:main,p:71805,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.mothur:Axes' galaxy.datatypes.registry DEBUG 2024-02-23 13:02:33,743 [pN:main,p:71805,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.constructive_solid_geometry:PlyAscii' galaxy.datatypes.registry DEBUG 2024-02-23 13:02:33,743 [pN:main,p:71805,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.constructive_solid_geometry:PlyBinary' galaxy.datatypes.registry DEBUG 2024-02-23 13:02:33,743 [pN:main,p:71805,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.constructive_solid_geometry:VtkAscii' galaxy.datatypes.registry DEBUG 2024-02-23 13:02:33,743 [pN:main,p:71805,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.constructive_solid_geometry:VtkBinary' galaxy.datatypes.registry DEBUG 2024-02-23 13:02:33,743 [pN:main,p:71805,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.constructive_solid_geometry:NeperTess' galaxy.datatypes.registry DEBUG 2024-02-23 13:02:33,743 [pN:main,p:71805,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.constructive_solid_geometry:NeperTesr' galaxy.datatypes.registry DEBUG 2024-02-23 13:02:33,743 [pN:main,p:71805,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.constructive_solid_geometry:GmshMsh' galaxy.datatypes.registry DEBUG 2024-02-23 13:02:33,743 [pN:main,p:71805,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.goldenpath:GoldenPath' galaxy.datatypes.registry DEBUG 2024-02-23 13:02:33,743 [pN:main,p:71805,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.interval:ScIdx' galaxy.datatypes.registry DEBUG 2024-02-23 13:02:33,743 [pN:main,p:71805,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.tabular:Vcf' galaxy.datatypes.registry DEBUG 2024-02-23 13:02:33,743 [pN:main,p:71805,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.binary:JP2' galaxy.datatypes.registry DEBUG 2024-02-23 13:02:33,743 [pN:main,p:71805,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.binary:TwoBit' galaxy.datatypes.registry DEBUG 2024-02-23 13:02:33,743 [pN:main,p:71805,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.binary:GeminiSQLite' galaxy.datatypes.registry DEBUG 2024-02-23 13:02:33,743 [pN:main,p:71805,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.binary:SQmass' galaxy.datatypes.registry DEBUG 2024-02-23 13:02:33,743 [pN:main,p:71805,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.binary:MzSQlite' galaxy.datatypes.registry DEBUG 2024-02-23 13:02:33,743 [pN:main,p:71805,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.binary:OSW' galaxy.datatypes.registry DEBUG 2024-02-23 13:02:33,743 [pN:main,p:71805,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.binary:PQP' galaxy.datatypes.registry DEBUG 2024-02-23 13:02:33,743 [pN:main,p:71805,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.binary:IdpDB' galaxy.datatypes.registry DEBUG 2024-02-23 13:02:33,743 [pN:main,p:71805,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.binary:ElibSQlite' galaxy.datatypes.registry DEBUG 2024-02-23 13:02:33,743 [pN:main,p:71805,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.binary:DlibSQlite' galaxy.datatypes.registry DEBUG 2024-02-23 13:02:33,743 [pN:main,p:71805,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.binary:BlibSQlite' galaxy.datatypes.registry DEBUG 2024-02-23 13:02:33,743 [pN:main,p:71805,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.binary:ChiraSQLite' galaxy.datatypes.registry DEBUG 2024-02-23 13:02:33,743 [pN:main,p:71805,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.binary:CuffDiffSQlite' galaxy.datatypes.registry DEBUG 2024-02-23 13:02:33,743 [pN:main,p:71805,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.binary:GAFASQLite' galaxy.datatypes.registry DEBUG 2024-02-23 13:02:33,743 [pN:main,p:71805,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.binary:NcbiTaxonomySQlite' galaxy.datatypes.registry DEBUG 2024-02-23 13:02:33,743 [pN:main,p:71805,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.binary:SQlite' galaxy.datatypes.registry DEBUG 2024-02-23 13:02:33,743 [pN:main,p:71805,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.binary:H5MLM' galaxy.datatypes.registry DEBUG 2024-02-23 13:02:33,743 [pN:main,p:71805,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.binary:Cool' galaxy.datatypes.registry DEBUG 2024-02-23 13:02:33,744 [pN:main,p:71805,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.binary:MCool' galaxy.datatypes.registry DEBUG 2024-02-23 13:02:33,744 [pN:main,p:71805,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.binary:Loom' galaxy.datatypes.registry DEBUG 2024-02-23 13:02:33,744 [pN:main,p:71805,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.binary:Anndata' galaxy.datatypes.registry DEBUG 2024-02-23 13:02:33,744 [pN:main,p:71805,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.binary:Biom2' galaxy.datatypes.registry DEBUG 2024-02-23 13:02:33,744 [pN:main,p:71805,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.binary:HexrdMaterials' galaxy.datatypes.registry DEBUG 2024-02-23 13:02:33,744 [pN:main,p:71805,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.binary:H5' galaxy.datatypes.registry DEBUG 2024-02-23 13:02:33,744 [pN:main,p:71805,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.binary:Grib' galaxy.datatypes.registry DEBUG 2024-02-23 13:02:33,744 [pN:main,p:71805,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.binary:HexrdImagesNpz' galaxy.datatypes.registry DEBUG 2024-02-23 13:02:33,744 [pN:main,p:71805,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.binary:HexrdEtaOmeNpz' galaxy.datatypes.registry DEBUG 2024-02-23 13:02:33,744 [pN:main,p:71805,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.binary:Npz' galaxy.datatypes.registry DEBUG 2024-02-23 13:02:33,744 [pN:main,p:71805,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.binary:Bam' galaxy.datatypes.registry DEBUG 2024-02-23 13:02:33,744 [pN:main,p:71805,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.binary:BamQuerynameSorted' galaxy.datatypes.registry DEBUG 2024-02-23 13:02:33,744 [pN:main,p:71805,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.binary:BamNative' galaxy.datatypes.registry DEBUG 2024-02-23 13:02:33,744 [pN:main,p:71805,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.binary:CRAM' galaxy.datatypes.registry DEBUG 2024-02-23 13:02:33,744 [pN:main,p:71805,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.binary:Sff' galaxy.datatypes.registry DEBUG 2024-02-23 13:02:33,744 [pN:main,p:71805,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.binary:Sra' galaxy.datatypes.registry DEBUG 2024-02-23 13:02:33,744 [pN:main,p:71805,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.binary:NetCDF' galaxy.datatypes.registry DEBUG 2024-02-23 13:02:33,744 [pN:main,p:71805,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.binary:DAA' galaxy.datatypes.registry DEBUG 2024-02-23 13:02:33,744 [pN:main,p:71805,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.binary:RMA6' galaxy.datatypes.registry DEBUG 2024-02-23 13:02:33,744 [pN:main,p:71805,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.binary:DMND' galaxy.datatypes.registry DEBUG 2024-02-23 13:02:33,744 [pN:main,p:71805,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.binary:Parquet' galaxy.datatypes.registry DEBUG 2024-02-23 13:02:33,744 [pN:main,p:71805,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.binary:BafTar' galaxy.datatypes.registry DEBUG 2024-02-23 13:02:33,744 [pN:main,p:71805,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.binary:TdfTar' galaxy.datatypes.registry DEBUG 2024-02-23 13:02:33,744 [pN:main,p:71805,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.binary:MassHunterTar' galaxy.datatypes.registry DEBUG 2024-02-23 13:02:33,744 [pN:main,p:71805,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.binary:MassLynxTar' galaxy.datatypes.registry DEBUG 2024-02-23 13:02:33,744 [pN:main,p:71805,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.binary:YepTar' galaxy.datatypes.registry DEBUG 2024-02-23 13:02:33,745 [pN:main,p:71805,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.binary:WiffTar' galaxy.datatypes.registry DEBUG 2024-02-23 13:02:33,745 [pN:main,p:71805,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.binary:Fast5ArchiveGz' galaxy.datatypes.registry DEBUG 2024-02-23 13:02:33,745 [pN:main,p:71805,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.binary:Fast5ArchiveBz2' galaxy.datatypes.registry DEBUG 2024-02-23 13:02:33,745 [pN:main,p:71805,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.binary:Fast5Archive' galaxy.datatypes.registry DEBUG 2024-02-23 13:02:33,745 [pN:main,p:71805,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.binary:Meryldb' galaxy.datatypes.registry DEBUG 2024-02-23 13:02:33,745 [pN:main,p:71805,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.binary:Bref3' galaxy.datatypes.registry DEBUG 2024-02-23 13:02:33,745 [pN:main,p:71805,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.binary:PostgresqlArchive' galaxy.datatypes.registry DEBUG 2024-02-23 13:02:33,745 [pN:main,p:71805,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.binary:ICM' galaxy.datatypes.registry DEBUG 2024-02-23 13:02:33,745 [pN:main,p:71805,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.binary:Idat' galaxy.datatypes.registry DEBUG 2024-02-23 13:02:33,745 [pN:main,p:71805,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.binary:Trr' galaxy.datatypes.registry DEBUG 2024-02-23 13:02:33,745 [pN:main,p:71805,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.binary:Dcd' galaxy.datatypes.registry DEBUG 2024-02-23 13:02:33,745 [pN:main,p:71805,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.binary:Xtc' galaxy.datatypes.registry DEBUG 2024-02-23 13:02:33,745 [pN:main,p:71805,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.binary:Cpt' galaxy.datatypes.registry DEBUG 2024-02-23 13:02:33,745 [pN:main,p:71805,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.binary:Edr' galaxy.datatypes.registry DEBUG 2024-02-23 13:02:33,745 [pN:main,p:71805,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.binary:Vel' galaxy.datatypes.registry DEBUG 2024-02-23 13:02:33,745 [pN:main,p:71805,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.binary:Xlsx' galaxy.datatypes.registry DEBUG 2024-02-23 13:02:33,745 [pN:main,p:71805,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.qiime2:QIIME2Metadata' galaxy.datatypes.registry DEBUG 2024-02-23 13:02:33,745 [pN:main,p:71805,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.qiime2:QIIME2Artifact' galaxy.datatypes.registry DEBUG 2024-02-23 13:02:33,745 [pN:main,p:71805,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.qiime2:QIIME2Visualization' galaxy.datatypes.registry DEBUG 2024-02-23 13:02:33,745 [pN:main,p:71805,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.binary:CompressedZipArchive' galaxy.datatypes.registry DEBUG 2024-02-23 13:02:33,745 [pN:main,p:71805,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.binary:Pretext' galaxy.datatypes.registry DEBUG 2024-02-23 13:02:33,745 [pN:main,p:71805,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.annotation:Augustus' galaxy.datatypes.registry DEBUG 2024-02-23 13:02:33,745 [pN:main,p:71805,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.xml:Owl' galaxy.datatypes.registry DEBUG 2024-02-23 13:02:33,745 [pN:main,p:71805,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.chain:Chain' galaxy.datatypes.registry DEBUG 2024-02-23 13:02:33,745 [pN:main,p:71805,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.triples:Rdf' galaxy.datatypes.registry DEBUG 2024-02-23 13:02:33,745 [pN:main,p:71805,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.blast:BlastXml' galaxy.datatypes.registry DEBUG 2024-02-23 13:02:33,746 [pN:main,p:71805,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.images:Gifti' galaxy.datatypes.registry DEBUG 2024-02-23 13:02:33,746 [pN:main,p:71805,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.xml:Phyloxml' galaxy.datatypes.registry DEBUG 2024-02-23 13:02:33,746 [pN:main,p:71805,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.xml:Dzi' galaxy.datatypes.registry DEBUG 2024-02-23 13:02:33,746 [pN:main,p:71805,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.xml:Sbml' galaxy.datatypes.registry DEBUG 2024-02-23 13:02:33,746 [pN:main,p:71805,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.proteomics:Dta2d' galaxy.datatypes.registry DEBUG 2024-02-23 13:02:33,746 [pN:main,p:71805,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.proteomics:Edta' galaxy.datatypes.registry DEBUG 2024-02-23 13:02:33,746 [pN:main,p:71805,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.proteomics:ConsensusXML' galaxy.datatypes.registry DEBUG 2024-02-23 13:02:33,746 [pN:main,p:71805,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.proteomics:IdXML' galaxy.datatypes.registry DEBUG 2024-02-23 13:02:33,746 [pN:main,p:71805,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.proteomics:FeatureXML' galaxy.datatypes.registry DEBUG 2024-02-23 13:02:33,746 [pN:main,p:71805,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.proteomics:MascotXML' galaxy.datatypes.registry DEBUG 2024-02-23 13:02:33,746 [pN:main,p:71805,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.proteomics:Mgf' galaxy.datatypes.registry DEBUG 2024-02-23 13:02:33,746 [pN:main,p:71805,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.proteomics:Ms2' galaxy.datatypes.registry DEBUG 2024-02-23 13:02:33,746 [pN:main,p:71805,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.proteomics:Msp' galaxy.datatypes.registry DEBUG 2024-02-23 13:02:33,746 [pN:main,p:71805,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.proteomics:MzData' galaxy.datatypes.registry DEBUG 2024-02-23 13:02:33,746 [pN:main,p:71805,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.proteomics:MzIdentML' galaxy.datatypes.registry DEBUG 2024-02-23 13:02:33,746 [pN:main,p:71805,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.proteomics:MzML' galaxy.datatypes.registry DEBUG 2024-02-23 13:02:33,746 [pN:main,p:71805,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.proteomics:MzQuantML' galaxy.datatypes.registry DEBUG 2024-02-23 13:02:33,746 [pN:main,p:71805,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.proteomics:MzTab' galaxy.datatypes.registry DEBUG 2024-02-23 13:02:33,746 [pN:main,p:71805,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.proteomics:MzTab2' galaxy.datatypes.registry DEBUG 2024-02-23 13:02:33,746 [pN:main,p:71805,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.proteomics:ParamXml' galaxy.datatypes.registry DEBUG 2024-02-23 13:02:33,746 [pN:main,p:71805,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.proteomics:MzXML' galaxy.datatypes.registry DEBUG 2024-02-23 13:02:33,746 [pN:main,p:71805,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.proteomics:NmrML' galaxy.datatypes.registry DEBUG 2024-02-23 13:02:33,746 [pN:main,p:71805,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.proteomics:Kroenik' galaxy.datatypes.registry DEBUG 2024-02-23 13:02:33,746 [pN:main,p:71805,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.proteomics:PepList' galaxy.datatypes.registry DEBUG 2024-02-23 13:02:33,747 [pN:main,p:71805,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.proteomics:PSMS' galaxy.datatypes.registry DEBUG 2024-02-23 13:02:33,747 [pN:main,p:71805,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.proteomics:PepXml' galaxy.datatypes.registry DEBUG 2024-02-23 13:02:33,747 [pN:main,p:71805,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.proteomics:ProtXML' galaxy.datatypes.registry DEBUG 2024-02-23 13:02:33,747 [pN:main,p:71805,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.proteomics:SPLib' galaxy.datatypes.registry DEBUG 2024-02-23 13:02:33,747 [pN:main,p:71805,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.proteomics:TandemXML' galaxy.datatypes.registry DEBUG 2024-02-23 13:02:33,747 [pN:main,p:71805,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.proteomics:ThermoRAW' galaxy.datatypes.registry DEBUG 2024-02-23 13:02:33,747 [pN:main,p:71805,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.proteomics:TraML' galaxy.datatypes.registry DEBUG 2024-02-23 13:02:33,747 [pN:main,p:71805,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.proteomics:TrafoXML' galaxy.datatypes.registry DEBUG 2024-02-23 13:02:33,747 [pN:main,p:71805,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.proteomics:UniProtXML' galaxy.datatypes.registry DEBUG 2024-02-23 13:02:33,747 [pN:main,p:71805,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.proteomics:XquestXML' galaxy.datatypes.registry DEBUG 2024-02-23 13:02:33,747 [pN:main,p:71805,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.proteomics:XquestSpecXML' galaxy.datatypes.registry DEBUG 2024-02-23 13:02:33,747 [pN:main,p:71805,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.proteomics:QCML' galaxy.datatypes.registry DEBUG 2024-02-23 13:02:33,747 [pN:main,p:71805,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.proteomics:Wiff' galaxy.datatypes.registry DEBUG 2024-02-23 13:02:33,747 [pN:main,p:71805,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.proteomics:PEFF' galaxy.datatypes.registry DEBUG 2024-02-23 13:02:33,747 [pN:main,p:71805,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.molecules:CML' galaxy.datatypes.registry DEBUG 2024-02-23 13:02:33,747 [pN:main,p:71805,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.xml:GenericXml' galaxy.datatypes.registry DEBUG 2024-02-23 13:02:33,747 [pN:main,p:71805,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.triples:HDT' galaxy.datatypes.registry DEBUG 2024-02-23 13:02:33,747 [pN:main,p:71805,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.triples:Turtle' galaxy.datatypes.registry DEBUG 2024-02-23 13:02:33,747 [pN:main,p:71805,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.triples:NTriples' galaxy.datatypes.registry DEBUG 2024-02-23 13:02:33,747 [pN:main,p:71805,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.triples:Jsonld' galaxy.datatypes.registry DEBUG 2024-02-23 13:02:33,747 [pN:main,p:71805,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.sequence:Maf' galaxy.datatypes.registry DEBUG 2024-02-23 13:02:33,747 [pN:main,p:71805,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.sequence:Lav' galaxy.datatypes.registry DEBUG 2024-02-23 13:02:33,747 [pN:main,p:71805,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.sequence:MemePsp' galaxy.datatypes.registry DEBUG 2024-02-23 13:02:33,748 [pN:main,p:71805,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.sequence:Fastg' galaxy.datatypes.registry DEBUG 2024-02-23 13:02:33,748 [pN:main,p:71805,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.sequence:csFasta' galaxy.datatypes.registry DEBUG 2024-02-23 13:02:33,748 [pN:main,p:71805,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.qualityscore:QualityScoreSOLiD' galaxy.datatypes.registry DEBUG 2024-02-23 13:02:33,748 [pN:main,p:71805,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.qualityscore:QualityScore454' galaxy.datatypes.registry DEBUG 2024-02-23 13:02:33,748 [pN:main,p:71805,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.molecules:SDF' galaxy.datatypes.registry DEBUG 2024-02-23 13:02:33,748 [pN:main,p:71805,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.molecules:PDB' galaxy.datatypes.registry DEBUG 2024-02-23 13:02:33,748 [pN:main,p:71805,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.molecules:Cell' galaxy.datatypes.registry DEBUG 2024-02-23 13:02:33,748 [pN:main,p:71805,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.molecules:CIF' galaxy.datatypes.registry DEBUG 2024-02-23 13:02:33,748 [pN:main,p:71805,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.molecules:ExtendedXYZ' galaxy.datatypes.registry DEBUG 2024-02-23 13:02:33,748 [pN:main,p:71805,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.molecules:XYZ' galaxy.datatypes.registry DEBUG 2024-02-23 13:02:33,748 [pN:main,p:71805,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.molecules:MOL2' galaxy.datatypes.registry DEBUG 2024-02-23 13:02:33,748 [pN:main,p:71805,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.molecules:InChI' galaxy.datatypes.registry DEBUG 2024-02-23 13:02:33,748 [pN:main,p:71805,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.molecules:FPS' galaxy.datatypes.registry DEBUG 2024-02-23 13:02:33,748 [pN:main,p:71805,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.molecules:PQR' galaxy.datatypes.registry DEBUG 2024-02-23 13:02:33,748 [pN:main,p:71805,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.molecules:GRO' galaxy.datatypes.registry DEBUG 2024-02-23 13:02:33,748 [pN:main,p:71805,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.phylip:Phylip' galaxy.datatypes.registry DEBUG 2024-02-23 13:02:33,748 [pN:main,p:71805,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.sequence:Fasta' galaxy.datatypes.registry DEBUG 2024-02-23 13:02:33,748 [pN:main,p:71805,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.sequence:FastqCSSanger' galaxy.datatypes.registry DEBUG 2024-02-23 13:02:33,748 [pN:main,p:71805,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.sequence:FastqSanger' galaxy.datatypes.registry DEBUG 2024-02-23 13:02:33,748 [pN:main,p:71805,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.sequence:Fastq' galaxy.datatypes.registry DEBUG 2024-02-23 13:02:33,748 [pN:main,p:71805,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.interval:Wiggle' galaxy.datatypes.registry DEBUG 2024-02-23 13:02:33,748 [pN:main,p:71805,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.text:Html' galaxy.datatypes.registry DEBUG 2024-02-23 13:02:33,749 [pN:main,p:71805,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.images:Pdf' galaxy.datatypes.registry DEBUG 2024-02-23 13:02:33,749 [pN:main,p:71805,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.sequence:Axt' galaxy.datatypes.registry DEBUG 2024-02-23 13:02:33,749 [pN:main,p:71805,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.sequence:Genbank' galaxy.datatypes.registry DEBUG 2024-02-23 13:02:33,749 [pN:main,p:71805,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.interval:Bed' galaxy.datatypes.registry DEBUG 2024-02-23 13:02:33,749 [pN:main,p:71805,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.interval:CustomTrack' galaxy.datatypes.registry DEBUG 2024-02-23 13:02:33,749 [pN:main,p:71805,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.interval:Gtf' galaxy.datatypes.registry DEBUG 2024-02-23 13:02:33,749 [pN:main,p:71805,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.interval:Gff' galaxy.datatypes.registry DEBUG 2024-02-23 13:02:33,749 [pN:main,p:71805,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.interval:Gff3' galaxy.datatypes.registry DEBUG 2024-02-23 13:02:33,749 [pN:main,p:71805,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.tabular:Pileup' galaxy.datatypes.registry DEBUG 2024-02-23 13:02:33,749 [pN:main,p:71805,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.tabular:Psl' galaxy.datatypes.registry DEBUG 2024-02-23 13:02:33,749 [pN:main,p:71805,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.text:Paf' galaxy.datatypes.registry DEBUG 2024-02-23 13:02:33,749 [pN:main,p:71805,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.interval:Interval' galaxy.datatypes.registry DEBUG 2024-02-23 13:02:33,749 [pN:main,p:71805,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.tabular:Sam' galaxy.datatypes.registry DEBUG 2024-02-23 13:02:33,749 [pN:main,p:71805,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.data:Newick' galaxy.datatypes.registry DEBUG 2024-02-23 13:02:33,749 [pN:main,p:71805,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.data:Nexus' galaxy.datatypes.registry DEBUG 2024-02-23 13:02:33,749 [pN:main,p:71805,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.text:IQTree' galaxy.datatypes.registry DEBUG 2024-02-23 13:02:33,749 [pN:main,p:71805,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.text:Obo' galaxy.datatypes.registry DEBUG 2024-02-23 13:02:33,749 [pN:main,p:71805,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.text:Arff' galaxy.datatypes.registry DEBUG 2024-02-23 13:02:33,749 [pN:main,p:71805,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.text:Ipynb' galaxy.datatypes.registry DEBUG 2024-02-23 13:02:33,749 [pN:main,p:71805,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.text:Biom1' galaxy.datatypes.registry DEBUG 2024-02-23 13:02:33,749 [pN:main,p:71805,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.text:ImgtJson' galaxy.datatypes.registry DEBUG 2024-02-23 13:02:33,750 [pN:main,p:71805,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.text:GeoJson' galaxy.datatypes.registry DEBUG 2024-02-23 13:02:33,750 [pN:main,p:71805,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.text:PithyaResult' galaxy.datatypes.registry DEBUG 2024-02-23 13:02:33,750 [pN:main,p:71805,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.text:BCSLts' galaxy.datatypes.registry DEBUG 2024-02-23 13:02:33,750 [pN:main,p:71805,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.text:Json' galaxy.datatypes.registry DEBUG 2024-02-23 13:02:33,750 [pN:main,p:71805,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.genetics:GenotypeMatrix' galaxy.datatypes.registry DEBUG 2024-02-23 13:02:33,750 [pN:main,p:71805,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.genetics:DataIn' galaxy.datatypes.registry DEBUG 2024-02-23 13:02:33,750 [pN:main,p:71805,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.genetics:MarkerMap' galaxy.datatypes.registry DEBUG 2024-02-23 13:02:33,750 [pN:main,p:71805,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.genetics:AllegroLOD' galaxy.datatypes.registry DEBUG 2024-02-23 13:02:33,750 [pN:main,p:71805,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.sequence:RNADotPlotMatrix' galaxy.datatypes.registry DEBUG 2024-02-23 13:02:33,750 [pN:main,p:71805,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.sequence:DotBracket' galaxy.datatypes.registry DEBUG 2024-02-23 13:02:33,750 [pN:main,p:71805,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.tabular:CMAP' galaxy.datatypes.registry DEBUG 2024-02-23 13:02:33,750 [pN:main,p:71805,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.tabular:ConnectivityTable' galaxy.datatypes.registry DEBUG 2024-02-23 13:02:33,750 [pN:main,p:71805,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.tabular:CSV' galaxy.datatypes.registry DEBUG 2024-02-23 13:02:33,750 [pN:main,p:71805,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.metacyto:mSummary' galaxy.datatypes.registry DEBUG 2024-02-23 13:02:33,750 [pN:main,p:71805,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.metacyto:mStats' galaxy.datatypes.registry DEBUG 2024-02-23 13:02:33,750 [pN:main,p:71805,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.tabular:TSV' galaxy.datatypes.registry DEBUG 2024-02-23 13:02:33,750 [pN:main,p:71805,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.tabular:MatrixMarket' galaxy.datatypes.registry DEBUG 2024-02-23 13:02:33,750 [pN:main,p:71805,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.msa:Hmmer2' galaxy.datatypes.registry DEBUG 2024-02-23 13:02:33,750 [pN:main,p:71805,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.msa:Hmmer3' galaxy.datatypes.registry DEBUG 2024-02-23 13:02:33,750 [pN:main,p:71805,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.msa:Stockholm_1_0' galaxy.datatypes.registry DEBUG 2024-02-23 13:02:33,751 [pN:main,p:71805,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.msa:MauveXmfa' galaxy.datatypes.registry DEBUG 2024-02-23 13:02:33,751 [pN:main,p:71805,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.msa:InfernalCM' galaxy.datatypes.registry DEBUG 2024-02-23 13:02:33,751 [pN:main,p:71805,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.annotation:SnapHmm' galaxy.datatypes.registry DEBUG 2024-02-23 13:02:33,751 [pN:main,p:71805,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.microarrays:Cel' galaxy.datatypes.registry DEBUG 2024-02-23 13:02:33,751 [pN:main,p:71805,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.microarrays:Gpr' galaxy.datatypes.registry DEBUG 2024-02-23 13:02:33,751 [pN:main,p:71805,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.microarrays:Gal' galaxy.datatypes.registry DEBUG 2024-02-23 13:02:33,751 [pN:main,p:71805,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.binary:RData' galaxy.datatypes.registry DEBUG 2024-02-23 13:02:33,751 [pN:main,p:71805,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.binary:RDS' galaxy.datatypes.registry DEBUG 2024-02-23 13:02:33,751 [pN:main,p:71805,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.images:Mrc2014' galaxy.datatypes.registry DEBUG 2024-02-23 13:02:33,751 [pN:main,p:71805,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.images:Jpg' galaxy.datatypes.registry DEBUG 2024-02-23 13:02:33,751 [pN:main,p:71805,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.images:Png' galaxy.datatypes.registry DEBUG 2024-02-23 13:02:33,751 [pN:main,p:71805,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.images:OMETiff' galaxy.datatypes.registry DEBUG 2024-02-23 13:02:33,751 [pN:main,p:71805,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.images:Tiff' galaxy.datatypes.registry DEBUG 2024-02-23 13:02:33,751 [pN:main,p:71805,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.images:Bmp' galaxy.datatypes.registry DEBUG 2024-02-23 13:02:33,751 [pN:main,p:71805,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.images:Gif' galaxy.datatypes.registry DEBUG 2024-02-23 13:02:33,751 [pN:main,p:71805,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.images:Im' galaxy.datatypes.registry DEBUG 2024-02-23 13:02:33,751 [pN:main,p:71805,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.images:Pcd' galaxy.datatypes.registry DEBUG 2024-02-23 13:02:33,751 [pN:main,p:71805,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.images:Pcx' galaxy.datatypes.registry DEBUG 2024-02-23 13:02:33,751 [pN:main,p:71805,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.images:Ppm' galaxy.datatypes.registry DEBUG 2024-02-23 13:02:33,751 [pN:main,p:71805,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.images:Psd' galaxy.datatypes.registry DEBUG 2024-02-23 13:02:33,752 [pN:main,p:71805,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.images:Xbm' galaxy.datatypes.registry DEBUG 2024-02-23 13:02:33,752 [pN:main,p:71805,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.images:Rgb' galaxy.datatypes.registry DEBUG 2024-02-23 13:02:33,752 [pN:main,p:71805,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.images:Pbm' galaxy.datatypes.registry DEBUG 2024-02-23 13:02:33,752 [pN:main,p:71805,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.images:Pgm' galaxy.datatypes.registry DEBUG 2024-02-23 13:02:33,752 [pN:main,p:71805,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.images:Xpm' galaxy.datatypes.registry DEBUG 2024-02-23 13:02:33,752 [pN:main,p:71805,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.images:Eps' galaxy.datatypes.registry DEBUG 2024-02-23 13:02:33,752 [pN:main,p:71805,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.images:Rast' galaxy.datatypes.registry DEBUG 2024-02-23 13:02:33,752 [pN:main,p:71805,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.images:Tck' galaxy.datatypes.registry DEBUG 2024-02-23 13:02:33,752 [pN:main,p:71805,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.images:Trk' galaxy.datatypes.registry DEBUG 2024-02-23 13:02:33,752 [pN:main,p:71805,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.images:Nifti1' galaxy.datatypes.registry DEBUG 2024-02-23 13:02:33,752 [pN:main,p:71805,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.images:Nifti2' galaxy.datatypes.registry DEBUG 2024-02-23 13:02:33,752 [pN:main,p:71805,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.images:Star' galaxy.datatypes.registry DEBUG 2024-02-23 13:02:33,752 [pN:main,p:71805,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.media:Wav' galaxy.datatypes.registry DEBUG 2024-02-23 13:02:33,752 [pN:main,p:71805,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.media:Mkv' galaxy.datatypes.registry DEBUG 2024-02-23 13:02:33,752 [pN:main,p:71805,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.media:Mp3' galaxy.datatypes.registry DEBUG 2024-02-23 13:02:33,752 [pN:main,p:71805,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.media:Mp4' galaxy.datatypes.registry DEBUG 2024-02-23 13:02:33,752 [pN:main,p:71805,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.media:Flv' galaxy.datatypes.registry DEBUG 2024-02-23 13:02:33,752 [pN:main,p:71805,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.media:Mpg' galaxy.datatypes.registry DEBUG 2024-02-23 13:02:33,752 [pN:main,p:71805,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.speech:TextGrid' galaxy.datatypes.registry DEBUG 2024-02-23 13:02:33,752 [pN:main,p:71805,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.speech:BPF' galaxy.datatypes.registry DEBUG 2024-02-23 13:02:33,753 [pN:main,p:71805,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.larch:FEFFInput' galaxy.datatypes.registry DEBUG 2024-02-23 13:02:33,753 [pN:main,p:71805,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.larch:AthenaProject' galaxy.datatypes.registry DEBUG 2024-02-23 13:02:33,753 [pN:main,p:71805,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.text:Castep' galaxy.datatypes.registry DEBUG 2024-02-23 13:02:33,753 [pN:main,p:71805,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.text:CTLresult' galaxy.datatypes.registry DEBUG 2024-02-23 13:02:33,753 [pN:main,p:71805,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.text:FormattedDensity' galaxy.datatypes.registry DEBUG 2024-02-23 13:02:33,753 [pN:main,p:71805,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.text:Param' galaxy.datatypes.registry DEBUG 2024-02-23 13:02:33,753 [pN:main,p:71805,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.text:Yaml' galaxy.datatypes.registry DEBUG 2024-02-23 13:02:33,753 [pN:main,p:71805,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.binary:OxliCountGraph' galaxy.datatypes.registry DEBUG 2024-02-23 13:02:33,753 [pN:main,p:71805,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.binary:OxliNodeGraph' galaxy.datatypes.registry DEBUG 2024-02-23 13:02:33,753 [pN:main,p:71805,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.binary:OxliTagSet' galaxy.datatypes.registry DEBUG 2024-02-23 13:02:33,753 [pN:main,p:71805,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.binary:OxliStopTags' galaxy.datatypes.registry DEBUG 2024-02-23 13:02:33,753 [pN:main,p:71805,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.binary:OxliSubset' galaxy.datatypes.registry DEBUG 2024-02-23 13:02:33,753 [pN:main,p:71805,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.binary:OxliGraphLabels' galaxy.datatypes.registry DEBUG 2024-02-23 13:02:33,753 [pN:main,p:71805,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.binary:FITS' galaxy.datatypes.registry DEBUG 2024-02-23 13:02:33,753 [pN:main,p:71805,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.neo4j:Neo4jDBzip' galaxy.datatypes.registry DEBUG 2024-02-23 13:02:33,753 [pN:main,p:71805,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.text:PithyaProperty' galaxy.datatypes.registry DEBUG 2024-02-23 13:02:33,753 [pN:main,p:71805,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.text:PithyaModel' galaxy.datatypes.registry DEBUG 2024-02-23 13:02:33,753 [pN:main,p:71805,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.text:BCSLmodel' galaxy.datatypes.registry DEBUG 2024-02-23 13:02:33,754 [pN:main,p:71805,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.text:StormSample' galaxy.datatypes.registry DEBUG 2024-02-23 13:02:33,754 [pN:main,p:71805,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.text:StormCheck' galaxy.datatypes.registry DEBUG 2024-02-23 13:02:33,756 [pN:main,p:71805,tN:MainThread] Build site file [tool-data/shared/ucsc/ucsc_build_sites.txt] not found using sample [tool-data/shared/ucsc/ucsc_build_sites.txt.sample]. galaxy.datatypes.registry DEBUG 2024-02-23 13:02:33,756 [pN:main,p:71805,tN:MainThread] Loaded build site 'ucsc': tool-data/shared/ucsc/ucsc_build_sites.txt.sample with display sites: ['main', 'test', 'archaea', 'ucla'] galaxy.datatypes.registry DEBUG 2024-02-23 13:02:33,757 [pN:main,p:71805,tN:MainThread] Loaded build site 'gbrowse': tool-data/shared/gbrowse/gbrowse_build_sites.txt with display sites: ['modencode', 'sgd_yeast', 'tair', 'wormbase', 'wormbase_ws120', 'wormbase_ws140', 'wormbase_ws170', 'wormbase_ws180', 'wormbase_ws190', 'wormbase_ws200', 'wormbase_ws204', 'wormbase_ws210', 'wormbase_ws220', 'wormbase_ws225'] galaxy.datatypes.registry DEBUG 2024-02-23 13:02:33,757 [pN:main,p:71805,tN:MainThread] Loaded build site 'ensembl': tool-data/shared/ensembl/ensembl_sites.txt galaxy.datatypes.registry DEBUG 2024-02-23 13:02:33,757 [pN:main,p:71805,tN:MainThread] Loaded build site 'ensembl_data_url': tool-data/shared/ensembl/ensembl_sites_data_URL.txt galaxy.datatypes.registry DEBUG 2024-02-23 13:02:33,757 [pN:main,p:71805,tN:MainThread] Build site file [tool-data/shared/igv/igv_build_sites.txt] not found using sample [tool-data/shared/igv/igv_build_sites.txt.sample]. galaxy.datatypes.registry DEBUG 2024-02-23 13:02:33,757 [pN:main,p:71805,tN:MainThread] Loaded build site 'igv': tool-data/shared/igv/igv_build_sites.txt.sample galaxy.datatypes.registry DEBUG 2024-02-23 13:02:33,757 [pN:main,p:71805,tN:MainThread] Build site file [tool-data/shared/rviewer/rviewer_build_sites.txt] not found using sample [tool-data/shared/rviewer/rviewer_build_sites.txt.sample]. galaxy.datatypes.registry DEBUG 2024-02-23 13:02:33,757 [pN:main,p:71805,tN:MainThread] Loaded build site 'rviewer': tool-data/shared/rviewer/rviewer_build_sites.txt.sample galaxy.util.tool_shed.tool_shed_registry DEBUG 2024-02-23 13:02:33,757 [pN:main,p:71805,tN:MainThread] Loading references to tool sheds from /tmp/tmpup6p245_/tool_sheds_conf.xml galaxy.util.tool_shed.tool_shed_registry DEBUG 2024-02-23 13:02:33,757 [pN:main,p:71805,tN:MainThread] Loaded reference to tool shed: Target Shed galaxy.queue_worker INFO 2024-02-23 13:02:33,758 [pN:main,p:71805,tN:MainThread] Initializing main Galaxy Queue Worker on sqlalchemy+sqlite:////tmp/tmpup6p245_/galaxy.sqlite?isolation_level=IMMEDIATE galaxy.tool_util.data WARNING 2024-02-23 13:02:33,764 [pN:main,p:71805,tN:MainThread] Cannot find index file '/scratch/rico/galaxytools/tools/ncbi_fcs_adaptor/test-data/ncbi_fcs_adaptor_config.tsv' for tool data table 'ncbi_fcs_adaptor_config' galaxy.tool_util.data DEBUG 2024-02-23 13:02:33,764 [pN:main,p:71805,tN:MainThread] Loaded tool data table 'ncbi_fcs_adaptor_config' from file '/scratch/rico/galaxytools/tools/ncbi_fcs_adaptor/tool_data_table_conf.xml.test' galaxy.tool_util.data WARNING 2024-02-23 13:02:33,765 [pN:main,p:71805,tN:MainThread] Cannot find index file '/scratch/rico/galaxytools/tools/ncbi_fcs_adaptor/test-data/ncbi_fcs_adaptor_databases.loc' for tool data table 'ncbi_fcs_adaptor_databases' galaxy.tool_util.data DEBUG 2024-02-23 13:02:33,765 [pN:main,p:71805,tN:MainThread] Loaded tool data table 'ncbi_fcs_adaptor_databases' from file '/scratch/rico/galaxytools/tools/ncbi_fcs_adaptor/tool_data_table_conf.xml.test' galaxy.tool_util.data WARNING 2024-02-23 13:02:33,765 [pN:main,p:71805,tN:MainThread] Cannot find index file '/scratch/rico/galaxytools/tools/ncbi_fcs_adaptor/test-data/ncbi_fcs_adaptor_divisions.tsv' for tool data table 'ncbi_fcs_adaptor_divisions' galaxy.tool_util.data DEBUG 2024-02-23 13:02:33,765 [pN:main,p:71805,tN:MainThread] Loaded tool data table 'ncbi_fcs_adaptor_divisions' from file '/scratch/rico/galaxytools/tools/ncbi_fcs_adaptor/tool_data_table_conf.xml.test' galaxy.visualization.genomes ERROR 2024-02-23 13:02:33,768 [pN:main,p:71805,tN:MainThread] Error reading twobit.loc Traceback (most recent call last): File "/scratch/rico/galaxy/lib/galaxy/visualization/genomes.py", line 220, in reload_genomes with open(twobit_path) as f: FileNotFoundError: [Errno 2] No such file or directory: '/scratch/rico/galaxy/tool-data/twobit.loc' galaxy.util WARNING 2024-02-23 13:02:33,907 [pN:main,p:71805,tN:MainThread] directory not found: /scratch/rico/galaxy/lib/galaxy/util/../../../config/plugins/activities galaxy.tools WARNING 2024-02-23 13:02:33,907 [pN:main,p:71805,tN:MainThread] The default shed tool config file (/tmp/tmpup6p245_/shed_tool_conf.xml) has been added to the tool_config_file option, if this is not the desired behavior, please set shed_tool_config_file to your primary shed-enabled tool config file galaxy.tool_util.toolbox.base INFO 2024-02-23 13:02:33,907 [pN:main,p:71805,tN:MainThread] Parsing the tool configuration /tmp/tmpup6p245_/tool_conf.xml galaxy.tool_util.toolbox.base DEBUG 2024-02-23 13:02:33,908 [pN:main,p:71805,tN:MainThread] Tool path for tool configuration /tmp/tmpup6p245_/tool_conf.xml is None galaxy.tool_util.toolbox.base DEBUG 2024-02-23 13:02:33,913 [pN:main,p:71805,tN:MainThread] Loaded tool id: upload1, version: 1.1.7 into tool panel.. galaxy.tool_util.toolbox.base DEBUG 2024-02-23 13:02:33,915 [pN:main,p:71805,tN:MainThread] Loaded tool id: ncbi_fcs_adaptor, version: 0.5.0+galaxy0 into tool panel.. galaxy.tools WARNING 2024-02-23 13:02:33,915 [pN:main,p:71805,tN:MainThread] The default shed tool config file (/tmp/tmpup6p245_/shed_tool_conf.xml) has been added to the tool_config_file option, if this is not the desired behavior, please set shed_tool_config_file to your primary shed-enabled tool config file galaxy.tool_util.toolbox.base INFO 2024-02-23 13:02:33,915 [pN:main,p:71805,tN:MainThread] Parsing the tool configuration /tmp/tmpup6p245_/shed_tools_conf.xml galaxy.tool_util.toolbox.base DEBUG 2024-02-23 13:02:33,915 [pN:main,p:71805,tN:MainThread] Tool path for shed tool configuration /tmp/tmpup6p245_/shed_tools_conf.xml is /tmp/tmpup6p245_/shed_tools galaxy.tools WARNING 2024-02-23 13:02:33,916 [pN:main,p:71805,tN:MainThread] The default shed tool config file (/tmp/tmpup6p245_/shed_tool_conf.xml) has been added to the tool_config_file option, if this is not the desired behavior, please set shed_tool_config_file to your primary shed-enabled tool config file galaxy.tool_util.toolbox.base INFO 2024-02-23 13:02:33,916 [pN:main,p:71805,tN:MainThread] Parsing the tool configuration /tmp/tmpup6p245_/empty_tool_conf.xml galaxy.tool_util.toolbox.base DEBUG 2024-02-23 13:02:33,916 [pN:main,p:71805,tN:MainThread] Tool path for tool configuration /tmp/tmpup6p245_/empty_tool_conf.xml is None galaxy.tool_util.toolbox.base DEBUG 2024-02-23 13:02:33,916 [pN:main,p:71805,tN:MainThread] Reading tools from config files finished (8.666 ms) galaxy.tool_util.toolbox.base DEBUG 2024-02-23 13:02:33,917 [pN:main,p:71805,tN:MainThread] Loaded tool id: upload1, version: 1.1.7 into tool panel.. galaxy.tool_util.toolbox.views.edam DEBUG 2024-02-23 13:02:33,917 [pN:main,p:71805,tN:MainThread] Loading EDAM tool panel finished (0.908 ms) galaxy.tool_util.toolbox.base DEBUG 2024-02-23 13:02:33,918 [pN:main,p:71805,tN:MainThread] Loaded tool id: upload1, version: 1.1.7 into tool panel.. galaxy.tool_util.toolbox.views.edam DEBUG 2024-02-23 13:02:33,918 [pN:main,p:71805,tN:MainThread] Loading EDAM tool panel finished (0.790 ms) galaxy.tool_util.toolbox.integrated_panel DEBUG 2024-02-23 13:02:33,918 [pN:main,p:71805,tN:MainThread] Writing integrated tool panel config file to '/tmp/tmpup6p245_/integrated_tool_panel_conf.xml' galaxy.util ERROR 2024-02-23 13:02:34,350 [pN:main,p:71805,tN:MainThread] Error parsing file /tmp/tmpup6p245_ Traceback (most recent call last): File "/scratch/rico/galaxy/lib/galaxy/util/__init__.py", line 305, in parse_xml tree = etree.parse(str(fname), parser=parser) File "src/lxml/etree.pyx", line 3541, in lxml.etree.parse File "src/lxml/parser.pxi", line 1879, in lxml.etree._parseDocument File "src/lxml/parser.pxi", line 1905, in lxml.etree._parseDocumentFromURL File "src/lxml/parser.pxi", line 1808, in lxml.etree._parseDocFromFile File "src/lxml/parser.pxi", line 1180, in lxml.etree._BaseParser._parseDocFromFile File "src/lxml/parser.pxi", line 618, in lxml.etree._ParserContext._handleParseResultDoc File "src/lxml/parser.pxi", line 728, in lxml.etree._handleParseResult File "src/lxml/parser.pxi", line 657, in lxml.etree._raiseParseError File "/tmp/tmpup6p245_", line 1 lxml.etree.XMLSyntaxError: Document is empty, line 1, column 1 galaxy.tools.data_manager.manager ERROR 2024-02-23 13:02:34,350 [pN:main,p:71805,tN:MainThread] There was an error parsing your Data Manager config file "/tmp/tmpup6p245_": Document is empty, line 1, column 1 (tmpup6p245_, line 1) galaxy.datatypes.registry DEBUG 2024-02-23 13:02:34,352 [pN:main,p:71805,tN:MainThread] Loaded display application 'ucsc_bam' for datatype 'bam', inherit=False. galaxy.datatypes.registry DEBUG 2024-02-23 13:02:34,353 [pN:main,p:71805,tN:MainThread] Loaded display application 'ensembl_bam' for datatype 'bam', inherit=False. galaxy.datatypes.display_applications.application ERROR 2024-02-23 13:02:34,353 [pN:main,p:71805,tN:MainThread] Error loading a set of Dynamic Display Application links: Unable to find data table named "igv_broad_genomes". galaxy.datatypes.registry DEBUG 2024-02-23 13:02:34,355 [pN:main,p:71805,tN:MainThread] Loaded display application 'igv_bam' for datatype 'bam', inherit=False. galaxy.datatypes.registry DEBUG 2024-02-23 13:02:34,355 [pN:main,p:71805,tN:MainThread] Loaded display application 'igb_bam' for datatype 'bam', inherit=False. galaxy.datatypes.display_applications.application ERROR 2024-02-23 13:02:34,356 [pN:main,p:71805,tN:MainThread] Error loading a set of Dynamic Display Application links: Unable to find data table named "bam_iobio". galaxy.datatypes.registry DEBUG 2024-02-23 13:02:34,356 [pN:main,p:71805,tN:MainThread] Loaded display application 'iobio_bam' for datatype 'bam', inherit=False. galaxy.datatypes.registry DEBUG 2024-02-23 13:02:34,356 [pN:main,p:71805,tN:MainThread] Loaded display application 'igb_bed' for datatype 'bed', inherit=False. galaxy.datatypes.registry DEBUG 2024-02-23 13:02:34,356 [pN:main,p:71805,tN:MainThread] Loaded display application 'igb_bedgraph' for datatype 'bedgraph', inherit=False. galaxy.datatypes.registry DEBUG 2024-02-23 13:02:34,357 [pN:main,p:71805,tN:MainThread] Loaded display application 'ucsc_bigbed' for datatype 'bigbed', inherit=False. galaxy.datatypes.registry DEBUG 2024-02-23 13:02:34,357 [pN:main,p:71805,tN:MainThread] Loaded display application 'igb_bb' for datatype 'bigbed', inherit=False. galaxy.datatypes.registry DEBUG 2024-02-23 13:02:34,358 [pN:main,p:71805,tN:MainThread] Loaded display application 'ucsc_bigwig' for datatype 'bigwig', inherit=False. galaxy.datatypes.registry DEBUG 2024-02-23 13:02:34,358 [pN:main,p:71805,tN:MainThread] Loaded display application 'igb_bigwig' for datatype 'bigwig', inherit=False. galaxy.datatypes.registry DEBUG 2024-02-23 13:02:34,358 [pN:main,p:71805,tN:MainThread] Loaded display application 'igv_bigwig' for datatype 'bigwig', inherit=False. galaxy.datatypes.display_applications.application ERROR 2024-02-23 13:02:34,358 [pN:main,p:71805,tN:MainThread] Error loading a set of Dynamic Display Application links: Unable to find data table named "intermine_simple_display". galaxy.datatypes.registry DEBUG 2024-02-23 13:02:34,358 [pN:main,p:71805,tN:MainThread] Loaded display application 'intermine_simple' for datatype 'intermine_tabular', inherit=False. galaxy.datatypes.display_applications.application ERROR 2024-02-23 13:02:34,359 [pN:main,p:71805,tN:MainThread] Error loading a set of Dynamic Display Application links: Unable to find data table named "igv_broad_genomes". galaxy.datatypes.registry DEBUG 2024-02-23 13:02:34,359 [pN:main,p:71805,tN:MainThread] Loaded display application 'igv_fasta' for datatype 'fasta', inherit=True. galaxy.datatypes.registry DEBUG 2024-02-23 13:02:34,360 [pN:main,p:71805,tN:MainThread] Loaded display application 'ensembl_gff' for datatype 'gff', inherit=True. galaxy.datatypes.display_applications.application ERROR 2024-02-23 13:02:34,360 [pN:main,p:71805,tN:MainThread] Error loading a set of Dynamic Display Application links: Unable to find data table named "igv_broad_genomes". galaxy.datatypes.registry DEBUG 2024-02-23 13:02:34,360 [pN:main,p:71805,tN:MainThread] Loaded display application 'igv_gff' for datatype 'gff', inherit=True. galaxy.datatypes.registry DEBUG 2024-02-23 13:02:34,361 [pN:main,p:71805,tN:MainThread] Loaded display application 'igb_gtf' for datatype 'gtf', inherit=False. galaxy.datatypes.registry DEBUG 2024-02-23 13:02:34,361 [pN:main,p:71805,tN:MainThread] Loaded display application 'ensembl_interval' for datatype 'interval', inherit=True. galaxy.datatypes.registry DEBUG 2024-02-23 13:02:34,362 [pN:main,p:71805,tN:MainThread] Loaded display application 'gbrowse_interval_as_bed' for datatype 'interval', inherit=True. galaxy.datatypes.registry DEBUG 2024-02-23 13:02:34,362 [pN:main,p:71805,tN:MainThread] Loaded display application 'rviewer_interval' for datatype 'interval', inherit=True. galaxy.datatypes.display_applications.application ERROR 2024-02-23 13:02:34,363 [pN:main,p:71805,tN:MainThread] Error loading a set of Dynamic Display Application links: Unable to find data table named "igv_broad_genomes". galaxy.datatypes.registry DEBUG 2024-02-23 13:02:34,363 [pN:main,p:71805,tN:MainThread] Loaded display application 'igv_interval_as_bed' for datatype 'interval', inherit=True. galaxy.datatypes.registry DEBUG 2024-02-23 13:02:34,363 [pN:main,p:71805,tN:MainThread] Loaded display application 'avivator' for datatype 'ome.tiff', inherit=False. galaxy.datatypes.display_applications.application ERROR 2024-02-23 13:02:34,363 [pN:main,p:71805,tN:MainThread] Error loading a set of Dynamic Display Application links: Unable to find data table named "q2view_display". galaxy.datatypes.registry DEBUG 2024-02-23 13:02:34,363 [pN:main,p:71805,tN:MainThread] Loaded display application 'q2view' for datatype 'qza', inherit=False. galaxy.datatypes.display_applications.application ERROR 2024-02-23 13:02:34,364 [pN:main,p:71805,tN:MainThread] Error loading a set of Dynamic Display Application links: Unable to find data table named "q2view_display". galaxy.datatypes.registry DEBUG 2024-02-23 13:02:34,364 [pN:main,p:71805,tN:MainThread] Loaded display application 'q2view' for datatype 'qzv', inherit=False. galaxy.datatypes.registry DEBUG 2024-02-23 13:02:34,364 [pN:main,p:71805,tN:MainThread] Loaded display application 'ucsc_maf_customtrack' for datatype 'mafcustomtrack', inherit=False. galaxy.datatypes.registry DEBUG 2024-02-23 13:02:34,364 [pN:main,p:71805,tN:MainThread] Loaded display application 'minerva_tabular' for datatype 'tabular', inherit=False. galaxy.datatypes.registry DEBUG 2024-02-23 13:02:34,365 [pN:main,p:71805,tN:MainThread] Loaded display application 'ucsc_vcf' for datatype 'vcf', inherit=False. galaxy.datatypes.display_applications.application ERROR 2024-02-23 13:02:34,365 [pN:main,p:71805,tN:MainThread] Error loading a set of Dynamic Display Application links: Unable to find data table named "igv_broad_genomes". galaxy.datatypes.registry DEBUG 2024-02-23 13:02:34,365 [pN:main,p:71805,tN:MainThread] Loaded display application 'igv_vcf' for datatype 'vcf', inherit=False. galaxy.datatypes.registry DEBUG 2024-02-23 13:02:34,365 [pN:main,p:71805,tN:MainThread] Loaded display application 'rviewer_vcf' for datatype 'vcf', inherit=True. galaxy.datatypes.display_applications.application ERROR 2024-02-23 13:02:34,366 [pN:main,p:71805,tN:MainThread] Error loading a set of Dynamic Display Application links: Unable to find data table named "vcf_iobio". galaxy.datatypes.registry DEBUG 2024-02-23 13:02:34,366 [pN:main,p:71805,tN:MainThread] Loaded display application 'iobio_vcf' for datatype 'vcf', inherit=False. galaxy.datatypes.registry DEBUG 2024-02-23 13:02:34,366 [pN:main,p:71805,tN:MainThread] Loaded display application 'igb_wig' for datatype 'wig', inherit=False. galaxy.datatypes.display_applications.application ERROR 2024-02-23 13:02:34,366 [pN:main,p:71805,tN:MainThread] Error loading a set of Dynamic Display Application links: Unable to find data table named "igv_broad_genomes". galaxy.datatypes.registry DEBUG 2024-02-23 13:02:34,366 [pN:main,p:71805,tN:MainThread] Loaded display application 'igv_vcf' for datatype 'vcf_bgzip', inherit=False. galaxy.datatypes.display_applications.application ERROR 2024-02-23 13:02:34,367 [pN:main,p:71805,tN:MainThread] Error loading a set of Dynamic Display Application links: Unable to find data table named "igv_broad_genomes". galaxy.datatypes.registry DEBUG 2024-02-23 13:02:34,367 [pN:main,p:71805,tN:MainThread] Loaded display application 'igv_genbank' for datatype 'genbank', inherit=False. galaxy.datatypes.display_applications.application ERROR 2024-02-23 13:02:34,367 [pN:main,p:71805,tN:MainThread] Error loading a set of Dynamic Display Application links: Unable to find data table named "biom_simple_display". galaxy.datatypes.registry DEBUG 2024-02-23 13:02:34,367 [pN:main,p:71805,tN:MainThread] Loaded display application 'biom_simple' for datatype 'biom1', inherit=False. galaxy.datatypes.display_applications.application ERROR 2024-02-23 13:02:34,367 [pN:main,p:71805,tN:MainThread] Error loading a set of Dynamic Display Application links: Unable to find data table named "icn3d_simple_display". galaxy.datatypes.registry DEBUG 2024-02-23 13:02:34,367 [pN:main,p:71805,tN:MainThread] Loaded display application 'icn3d_simple' for datatype 'sdf', inherit=False. galaxy.datatypes.display_applications.application ERROR 2024-02-23 13:02:34,367 [pN:main,p:71805,tN:MainThread] Error loading a set of Dynamic Display Application links: Unable to find data table named "icn3d_simple_display". galaxy.datatypes.registry DEBUG 2024-02-23 13:02:34,367 [pN:main,p:71805,tN:MainThread] Loaded display application 'icn3d_simple' for datatype 'mol2', inherit=False. galaxy.datatypes.display_applications.application ERROR 2024-02-23 13:02:34,367 [pN:main,p:71805,tN:MainThread] Error loading a set of Dynamic Display Application links: Unable to find data table named "icn3d_simple_display". galaxy.datatypes.registry DEBUG 2024-02-23 13:02:34,367 [pN:main,p:71805,tN:MainThread] Loaded display application 'icn3d_simple' for datatype 'pdb', inherit=False. galaxy.datatypes.registry DEBUG 2024-02-23 13:02:34,368 [pN:main,p:71805,tN:MainThread] Loaded display application 'ucsc_trackhub' for datatype 'trackhub', inherit=False. galaxy.datatypes.registry DEBUG 2024-02-23 13:02:34,368 [pN:main,p:71805,tN:MainThread] Adding inherited display application 'ensembl_interval' to datatype 'bed' galaxy.datatypes.registry DEBUG 2024-02-23 13:02:34,368 [pN:main,p:71805,tN:MainThread] Adding inherited display application 'gbrowse_interval_as_bed' to datatype 'bed' galaxy.datatypes.registry DEBUG 2024-02-23 13:02:34,368 [pN:main,p:71805,tN:MainThread] Adding inherited display application 'rviewer_interval' to datatype 'bed' galaxy.datatypes.registry DEBUG 2024-02-23 13:02:34,368 [pN:main,p:71805,tN:MainThread] Adding inherited display application 'igv_interval_as_bed' to datatype 'bed' galaxy.datatypes.registry DEBUG 2024-02-23 13:02:34,368 [pN:main,p:71805,tN:MainThread] Adding inherited display application 'ensembl_interval' to datatype 'bedgraph' galaxy.datatypes.registry DEBUG 2024-02-23 13:02:34,368 [pN:main,p:71805,tN:MainThread] Adding inherited display application 'gbrowse_interval_as_bed' to datatype 'bedgraph' galaxy.datatypes.registry DEBUG 2024-02-23 13:02:34,368 [pN:main,p:71805,tN:MainThread] Adding inherited display application 'rviewer_interval' to datatype 'bedgraph' galaxy.datatypes.registry DEBUG 2024-02-23 13:02:34,368 [pN:main,p:71805,tN:MainThread] Adding inherited display application 'igv_interval_as_bed' to datatype 'bedgraph' galaxy.datatypes.registry DEBUG 2024-02-23 13:02:34,368 [pN:main,p:71805,tN:MainThread] Adding inherited display application 'ensembl_interval' to datatype 'bedstrict' galaxy.datatypes.registry DEBUG 2024-02-23 13:02:34,368 [pN:main,p:71805,tN:MainThread] Adding inherited display application 'gbrowse_interval_as_bed' to datatype 'bedstrict' galaxy.datatypes.registry DEBUG 2024-02-23 13:02:34,368 [pN:main,p:71805,tN:MainThread] Adding inherited display application 'rviewer_interval' to datatype 'bedstrict' galaxy.datatypes.registry DEBUG 2024-02-23 13:02:34,368 [pN:main,p:71805,tN:MainThread] Adding inherited display application 'igv_interval_as_bed' to datatype 'bedstrict' galaxy.datatypes.registry DEBUG 2024-02-23 13:02:34,368 [pN:main,p:71805,tN:MainThread] Adding inherited display application 'ensembl_interval' to datatype 'bed6' galaxy.datatypes.registry DEBUG 2024-02-23 13:02:34,368 [pN:main,p:71805,tN:MainThread] Adding inherited display application 'gbrowse_interval_as_bed' to datatype 'bed6' galaxy.datatypes.registry DEBUG 2024-02-23 13:02:34,368 [pN:main,p:71805,tN:MainThread] Adding inherited display application 'rviewer_interval' to datatype 'bed6' galaxy.datatypes.registry DEBUG 2024-02-23 13:02:34,368 [pN:main,p:71805,tN:MainThread] Adding inherited display application 'igv_interval_as_bed' to datatype 'bed6' galaxy.datatypes.registry DEBUG 2024-02-23 13:02:34,368 [pN:main,p:71805,tN:MainThread] Adding inherited display application 'ensembl_interval' to datatype 'bed12' galaxy.datatypes.registry DEBUG 2024-02-23 13:02:34,368 [pN:main,p:71805,tN:MainThread] Adding inherited display application 'gbrowse_interval_as_bed' to datatype 'bed12' galaxy.datatypes.registry DEBUG 2024-02-23 13:02:34,368 [pN:main,p:71805,tN:MainThread] Adding inherited display application 'rviewer_interval' to datatype 'bed12' galaxy.datatypes.registry DEBUG 2024-02-23 13:02:34,368 [pN:main,p:71805,tN:MainThread] Adding inherited display application 'igv_interval_as_bed' to datatype 'bed12' galaxy.datatypes.registry DEBUG 2024-02-23 13:02:34,368 [pN:main,p:71805,tN:MainThread] Adding inherited display application 'ensembl_interval' to datatype 'probed' galaxy.datatypes.registry DEBUG 2024-02-23 13:02:34,368 [pN:main,p:71805,tN:MainThread] Adding inherited display application 'gbrowse_interval_as_bed' to datatype 'probed' galaxy.datatypes.registry DEBUG 2024-02-23 13:02:34,368 [pN:main,p:71805,tN:MainThread] Adding inherited display application 'rviewer_interval' to datatype 'probed' galaxy.datatypes.registry DEBUG 2024-02-23 13:02:34,368 [pN:main,p:71805,tN:MainThread] Adding inherited display application 'igv_interval_as_bed' to datatype 'probed' galaxy.datatypes.registry DEBUG 2024-02-23 13:02:34,369 [pN:main,p:71805,tN:MainThread] Adding inherited display application 'ensembl_interval' to datatype 'chrint' galaxy.datatypes.registry DEBUG 2024-02-23 13:02:34,369 [pN:main,p:71805,tN:MainThread] Adding inherited display application 'gbrowse_interval_as_bed' to datatype 'chrint' galaxy.datatypes.registry DEBUG 2024-02-23 13:02:34,369 [pN:main,p:71805,tN:MainThread] Adding inherited display application 'rviewer_interval' to datatype 'chrint' galaxy.datatypes.registry DEBUG 2024-02-23 13:02:34,369 [pN:main,p:71805,tN:MainThread] Adding inherited display application 'igv_interval_as_bed' to datatype 'chrint' galaxy.datatypes.registry DEBUG 2024-02-23 13:02:34,369 [pN:main,p:71805,tN:MainThread] Adding inherited display application 'igv_fasta' to datatype 'fasta.gz' galaxy.datatypes.registry DEBUG 2024-02-23 13:02:34,369 [pN:main,p:71805,tN:MainThread] Adding inherited display application 'ensembl_gff' to datatype 'gff3' galaxy.datatypes.registry DEBUG 2024-02-23 13:02:34,369 [pN:main,p:71805,tN:MainThread] Adding inherited display application 'igv_gff' to datatype 'gff3' galaxy.datatypes.registry DEBUG 2024-02-23 13:02:34,369 [pN:main,p:71805,tN:MainThread] Adding inherited display application 'ensembl_gff' to datatype 'gff3.gz' galaxy.datatypes.registry DEBUG 2024-02-23 13:02:34,369 [pN:main,p:71805,tN:MainThread] Adding inherited display application 'igv_gff' to datatype 'gff3.gz' galaxy.datatypes.registry DEBUG 2024-02-23 13:02:34,369 [pN:main,p:71805,tN:MainThread] Adding inherited display application 'ensembl_gff' to datatype 'gff3.bz2' galaxy.datatypes.registry DEBUG 2024-02-23 13:02:34,369 [pN:main,p:71805,tN:MainThread] Adding inherited display application 'igv_gff' to datatype 'gff3.bz2' galaxy.datatypes.registry DEBUG 2024-02-23 13:02:34,369 [pN:main,p:71805,tN:MainThread] Adding inherited display application 'ensembl_gff' to datatype 'gtf' galaxy.datatypes.registry DEBUG 2024-02-23 13:02:34,369 [pN:main,p:71805,tN:MainThread] Adding inherited display application 'igv_gff' to datatype 'gtf' galaxy.datatypes.registry DEBUG 2024-02-23 13:02:34,370 [pN:main,p:71805,tN:MainThread] Adding inherited display application 'ensembl_interval' to datatype 'encodepeak' galaxy.datatypes.registry DEBUG 2024-02-23 13:02:34,370 [pN:main,p:71805,tN:MainThread] Adding inherited display application 'gbrowse_interval_as_bed' to datatype 'encodepeak' galaxy.datatypes.registry DEBUG 2024-02-23 13:02:34,370 [pN:main,p:71805,tN:MainThread] Adding inherited display application 'rviewer_interval' to datatype 'encodepeak' galaxy.datatypes.registry DEBUG 2024-02-23 13:02:34,370 [pN:main,p:71805,tN:MainThread] Adding inherited display application 'igv_interval_as_bed' to datatype 'encodepeak' galaxy.datatypes.registry DEBUG 2024-02-23 13:02:34,370 [pN:main,p:71805,tN:MainThread] Adding inherited display application 'igv_fasta' to datatype 'sequences' galaxy.datatypes.registry DEBUG 2024-02-23 13:02:34,370 [pN:main,p:71805,tN:MainThread] Adding inherited display application 'ensembl_interval' to datatype 'interval_tabix.gz' galaxy.datatypes.registry DEBUG 2024-02-23 13:02:34,370 [pN:main,p:71805,tN:MainThread] Adding inherited display application 'gbrowse_interval_as_bed' to datatype 'interval_tabix.gz' galaxy.datatypes.registry DEBUG 2024-02-23 13:02:34,370 [pN:main,p:71805,tN:MainThread] Adding inherited display application 'rviewer_interval' to datatype 'interval_tabix.gz' galaxy.datatypes.registry DEBUG 2024-02-23 13:02:34,370 [pN:main,p:71805,tN:MainThread] Adding inherited display application 'igv_interval_as_bed' to datatype 'interval_tabix.gz' galaxy.datatypes.registry DEBUG 2024-02-23 13:02:34,370 [pN:main,p:71805,tN:MainThread] Adding inherited display application 'ensembl_interval' to datatype 'juicer_medium_tabix.gz' galaxy.datatypes.registry DEBUG 2024-02-23 13:02:34,370 [pN:main,p:71805,tN:MainThread] Adding inherited display application 'gbrowse_interval_as_bed' to datatype 'juicer_medium_tabix.gz' galaxy.datatypes.registry DEBUG 2024-02-23 13:02:34,370 [pN:main,p:71805,tN:MainThread] Adding inherited display application 'rviewer_interval' to datatype 'juicer_medium_tabix.gz' galaxy.datatypes.registry DEBUG 2024-02-23 13:02:34,370 [pN:main,p:71805,tN:MainThread] Adding inherited display application 'igv_interval_as_bed' to datatype 'juicer_medium_tabix.gz' galaxy.datatypes.registry DEBUG 2024-02-23 13:02:34,370 [pN:main,p:71805,tN:MainThread] Adding inherited display application 'ensembl_interval' to datatype 'bed_tabix.gz' galaxy.datatypes.registry DEBUG 2024-02-23 13:02:34,370 [pN:main,p:71805,tN:MainThread] Adding inherited display application 'gbrowse_interval_as_bed' to datatype 'bed_tabix.gz' galaxy.datatypes.registry DEBUG 2024-02-23 13:02:34,370 [pN:main,p:71805,tN:MainThread] Adding inherited display application 'rviewer_interval' to datatype 'bed_tabix.gz' galaxy.datatypes.registry DEBUG 2024-02-23 13:02:34,370 [pN:main,p:71805,tN:MainThread] Adding inherited display application 'igv_interval_as_bed' to datatype 'bed_tabix.gz' galaxy.datatypes.registry DEBUG 2024-02-23 13:02:34,371 [pN:main,p:71805,tN:MainThread] Adding inherited display application 'ensembl_interval' to datatype 'gff_tabix.gz' galaxy.datatypes.registry DEBUG 2024-02-23 13:02:34,371 [pN:main,p:71805,tN:MainThread] Adding inherited display application 'gbrowse_interval_as_bed' to datatype 'gff_tabix.gz' galaxy.datatypes.registry DEBUG 2024-02-23 13:02:34,371 [pN:main,p:71805,tN:MainThread] Adding inherited display application 'rviewer_interval' to datatype 'gff_tabix.gz' galaxy.datatypes.registry DEBUG 2024-02-23 13:02:34,371 [pN:main,p:71805,tN:MainThread] Adding inherited display application 'igv_interval_as_bed' to datatype 'gff_tabix.gz' galaxy.datatypes.registry DEBUG 2024-02-23 13:02:34,371 [pN:main,p:71805,tN:MainThread] Adding inherited display application 'igv_fasta' to datatype 'mothur.align' galaxy.datatypes.registry DEBUG 2024-02-23 13:02:34,374 [pN:main,p:71805,tN:MainThread] Loaded converter: CONVERTER_uncompressed_to_gz galaxy.datatypes.registry DEBUG 2024-02-23 13:02:34,374 [pN:main,p:71805,tN:MainThread] Loaded converter: CONVERTER_gz_to_uncompressed galaxy.datatypes.registry DEBUG 2024-02-23 13:02:34,376 [pN:main,p:71805,tN:MainThread] Loaded converter: CONVERTER_uncompressed_to_gz galaxy.datatypes.registry DEBUG 2024-02-23 13:02:34,376 [pN:main,p:71805,tN:MainThread] Loaded converter: CONVERTER_gz_to_uncompressed galaxy.datatypes.registry DEBUG 2024-02-23 13:02:34,378 [pN:main,p:71805,tN:MainThread] Loaded converter: CONVERTER_uncompressed_to_gz galaxy.datatypes.registry DEBUG 2024-02-23 13:02:34,378 [pN:main,p:71805,tN:MainThread] Loaded converter: CONVERTER_gz_to_uncompressed galaxy.datatypes.registry DEBUG 2024-02-23 13:02:34,379 [pN:main,p:71805,tN:MainThread] Loaded converter: CONVERTER_Bam_Bai_0 galaxy.datatypes.registry DEBUG 2024-02-23 13:02:34,380 [pN:main,p:71805,tN:MainThread] Loaded converter: CONVERTER_bam_to_bigwig_0 galaxy.datatypes.registry DEBUG 2024-02-23 13:02:34,381 [pN:main,p:71805,tN:MainThread] Loaded converter: CONVERTER_bam_to_qname_sorted_bam galaxy.datatypes.registry DEBUG 2024-02-23 13:02:34,381 [pN:main,p:71805,tN:MainThread] Loaded converter: CONVERTER_bam_to_bigwig_0 galaxy.datatypes.registry DEBUG 2024-02-23 13:02:34,382 [pN:main,p:71805,tN:MainThread] Loaded converter: CONVERTER_bam_to_coodinate_sorted_bam galaxy.datatypes.registry DEBUG 2024-02-23 13:02:34,383 [pN:main,p:71805,tN:MainThread] Loaded converter: CONVERTER_bam_to_qname_sorted_bam galaxy.datatypes.registry DEBUG 2024-02-23 13:02:34,384 [pN:main,p:71805,tN:MainThread] Loaded converter: CONVERTER_cram_to_bam_0 galaxy.datatypes.registry DEBUG 2024-02-23 13:02:34,385 [pN:main,p:71805,tN:MainThread] Loaded converter: CONVERTER_bed_to_gff_0 galaxy.datatypes.registry DEBUG 2024-02-23 13:02:34,386 [pN:main,p:71805,tN:MainThread] Loaded converter: CONVERTER_interval_to_bgzip_0 galaxy.datatypes.registry DEBUG 2024-02-23 13:02:34,388 [pN:main,p:71805,tN:MainThread] Loaded converter: CONVERTER_interval_to_tabix_0 galaxy.datatypes.registry DEBUG 2024-02-23 13:02:34,389 [pN:main,p:71805,tN:MainThread] Loaded converter: CONVERTER_bed_gff_or_vcf_to_bigwig_0 galaxy.datatypes.registry DEBUG 2024-02-23 13:02:34,389 [pN:main,p:71805,tN:MainThread] Loaded converter: CONVERTER_bed_to_fli_0 galaxy.datatypes.registry DEBUG 2024-02-23 13:02:34,390 [pN:main,p:71805,tN:MainThread] Loaded converter: CONVERTER_bedgraph_to_bigwig galaxy.datatypes.registry DEBUG 2024-02-23 13:02:34,391 [pN:main,p:71805,tN:MainThread] Loaded converter: CONVERTER_len_to_linecount galaxy.datatypes.registry DEBUG 2024-02-23 13:02:34,391 [pN:main,p:71805,tN:MainThread] Loaded converter: CONVERTER_parquet_to_csv galaxy.datatypes.registry DEBUG 2024-02-23 13:02:34,393 [pN:main,p:71805,tN:MainThread] Loaded converter: bigwigtowig galaxy.datatypes.registry DEBUG 2024-02-23 13:02:34,395 [pN:main,p:71805,tN:MainThread] Loaded converter: CONVERTER_interval_to_bgzip_0 galaxy.datatypes.registry DEBUG 2024-02-23 13:02:34,396 [pN:main,p:71805,tN:MainThread] Loaded converter: CONVERTER_interval_to_tabix_0 galaxy.datatypes.registry DEBUG 2024-02-23 13:02:34,397 [pN:main,p:71805,tN:MainThread] Loaded converter: CONVERTER_bed_gff_or_vcf_to_bigwig_0 galaxy.datatypes.registry DEBUG 2024-02-23 13:02:34,398 [pN:main,p:71805,tN:MainThread] Loaded converter: csv_to_tabular galaxy.datatypes.registry DEBUG 2024-02-23 13:02:34,399 [pN:main,p:71805,tN:MainThread] Loaded converter: tabular_to_csv galaxy.datatypes.registry DEBUG 2024-02-23 13:02:34,399 [pN:main,p:71805,tN:MainThread] Loaded converter: CONVERTER_fasta_to_tabular galaxy.datatypes.registry DEBUG 2024-02-23 13:02:34,400 [pN:main,p:71805,tN:MainThread] Loaded converter: CONVERTER_fasta_to_bowtie_base_index galaxy.datatypes.registry DEBUG 2024-02-23 13:02:34,401 [pN:main,p:71805,tN:MainThread] Loaded converter: CONVERTER_fasta_to_bowtie_color_index galaxy.datatypes.registry DEBUG 2024-02-23 13:02:34,401 [pN:main,p:71805,tN:MainThread] Loaded converter: CONVERTER_fasta_to_2bit galaxy.datatypes.registry DEBUG 2024-02-23 13:02:34,402 [pN:main,p:71805,tN:MainThread] Loaded converter: CONVERTER_fasta_to_len galaxy.datatypes.registry DEBUG 2024-02-23 13:02:34,403 [pN:main,p:71805,tN:MainThread] Loaded converter: CONVERTER_fasta_to_fai galaxy.datatypes.registry DEBUG 2024-02-23 13:02:34,404 [pN:main,p:71805,tN:MainThread] Loaded converter: CONVERTER_uncompressed_to_gz galaxy.datatypes.registry DEBUG 2024-02-23 13:02:34,405 [pN:main,p:71805,tN:MainThread] Loaded converter: CONVERTER_gz_to_uncompressed galaxy.datatypes.registry DEBUG 2024-02-23 13:02:34,405 [pN:main,p:71805,tN:MainThread] Loaded converter: CONVERTER_fastq_to_fqtoc0 galaxy.datatypes.registry DEBUG 2024-02-23 13:02:34,406 [pN:main,p:71805,tN:MainThread] Loaded converter: CONVERTER_uncompressed_to_gz galaxy.datatypes.registry DEBUG 2024-02-23 13:02:34,407 [pN:main,p:71805,tN:MainThread] Loaded converter: CONVERTER_gz_to_uncompressed galaxy.datatypes.registry DEBUG 2024-02-23 13:02:34,408 [pN:main,p:71805,tN:MainThread] Loaded converter: CONVERTER_bz2_to_uncompressed galaxy.datatypes.registry DEBUG 2024-02-23 13:02:34,409 [pN:main,p:71805,tN:MainThread] Loaded converter: CONVERTER_fastq_to_fqtoc0 galaxy.datatypes.registry DEBUG 2024-02-23 13:02:34,410 [pN:main,p:71805,tN:MainThread] Loaded converter: CONVERTER_uncompressed_to_gz galaxy.datatypes.registry DEBUG 2024-02-23 13:02:34,410 [pN:main,p:71805,tN:MainThread] Loaded converter: CONVERTER_gz_to_uncompressed galaxy.datatypes.registry DEBUG 2024-02-23 13:02:34,411 [pN:main,p:71805,tN:MainThread] Loaded converter: CONVERTER_bz2_to_uncompressed galaxy.datatypes.registry DEBUG 2024-02-23 13:02:34,412 [pN:main,p:71805,tN:MainThread] Loaded converter: CONVERTER_fastq_to_fqtoc0 galaxy.datatypes.registry DEBUG 2024-02-23 13:02:34,413 [pN:main,p:71805,tN:MainThread] Loaded converter: CONVERTER_uncompressed_to_gz galaxy.datatypes.registry DEBUG 2024-02-23 13:02:34,414 [pN:main,p:71805,tN:MainThread] Loaded converter: CONVERTER_gz_to_uncompressed galaxy.datatypes.registry DEBUG 2024-02-23 13:02:34,414 [pN:main,p:71805,tN:MainThread] Loaded converter: CONVERTER_bz2_to_uncompressed galaxy.datatypes.registry DEBUG 2024-02-23 13:02:34,415 [pN:main,p:71805,tN:MainThread] Loaded converter: CONVERTER_fastq_to_fqtoc0 galaxy.datatypes.registry DEBUG 2024-02-23 13:02:34,416 [pN:main,p:71805,tN:MainThread] Loaded converter: CONVERTER_uncompressed_to_gz galaxy.datatypes.registry DEBUG 2024-02-23 13:02:34,418 [pN:main,p:71805,tN:MainThread] Loaded converter: CONVERTER_gz_to_uncompressed galaxy.datatypes.registry DEBUG 2024-02-23 13:02:34,418 [pN:main,p:71805,tN:MainThread] Loaded converter: CONVERTER_bz2_to_uncompressed galaxy.datatypes.registry DEBUG 2024-02-23 13:02:34,419 [pN:main,p:71805,tN:MainThread] Loaded converter: CONVERTER_fastq_to_fqtoc0 galaxy.datatypes.registry DEBUG 2024-02-23 13:02:34,420 [pN:main,p:71805,tN:MainThread] Loaded converter: CONVERTER_uncompressed_to_gz galaxy.datatypes.registry DEBUG 2024-02-23 13:02:34,421 [pN:main,p:71805,tN:MainThread] Loaded converter: CONVERTER_gz_to_uncompressed galaxy.datatypes.registry DEBUG 2024-02-23 13:02:34,422 [pN:main,p:71805,tN:MainThread] Loaded converter: CONVERTER_bz2_to_uncompressed galaxy.datatypes.registry DEBUG 2024-02-23 13:02:34,422 [pN:main,p:71805,tN:MainThread] Loaded converter: CONVERTER_gff_to_bed_0 galaxy.datatypes.registry DEBUG 2024-02-23 13:02:34,423 [pN:main,p:71805,tN:MainThread] Loaded converter: CONVERTER_gff_to_interval_index_0 galaxy.datatypes.registry DEBUG 2024-02-23 13:02:34,424 [pN:main,p:71805,tN:MainThread] Loaded converter: CONVERTER_bed_gff_or_vcf_to_bigwig_0 galaxy.datatypes.registry DEBUG 2024-02-23 13:02:34,424 [pN:main,p:71805,tN:MainThread] Loaded converter: CONVERTER_gff_to_fli_0 galaxy.datatypes.registry DEBUG 2024-02-23 13:02:34,426 [pN:main,p:71805,tN:MainThread] Loaded converter: CONVERTER_interval_to_bgzip_0 galaxy.datatypes.registry DEBUG 2024-02-23 13:02:34,427 [pN:main,p:71805,tN:MainThread] Loaded converter: CONVERTER_interval_to_tabix_0 galaxy.datatypes.registry DEBUG 2024-02-23 13:02:34,428 [pN:main,p:71805,tN:MainThread] Loaded converter: CONVERTER_uncompressed_to_gz galaxy.datatypes.registry DEBUG 2024-02-23 13:02:34,429 [pN:main,p:71805,tN:MainThread] Loaded converter: CONVERTER_gz_to_uncompressed galaxy.datatypes.registry DEBUG 2024-02-23 13:02:34,430 [pN:main,p:71805,tN:MainThread] Loaded converter: CONVERTER_bz2_to_uncompressed galaxy.datatypes.registry DEBUG 2024-02-23 13:02:34,430 [pN:main,p:71805,tN:MainThread] Loaded converter: CONVERTER_gff_to_interval_index_0 galaxy.datatypes.registry DEBUG 2024-02-23 13:02:34,431 [pN:main,p:71805,tN:MainThread] Loaded converter: CONVERTER_bed_gff_or_vcf_to_bigwig_0 galaxy.datatypes.registry DEBUG 2024-02-23 13:02:34,432 [pN:main,p:71805,tN:MainThread] Loaded converter: CONVERTER_interval_to_bed_0 galaxy.datatypes.registry DEBUG 2024-02-23 13:02:34,433 [pN:main,p:71805,tN:MainThread] Loaded converter: CONVERTER_interval_to_bedstrict_0 galaxy.datatypes.registry DEBUG 2024-02-23 13:02:34,433 [pN:main,p:71805,tN:MainThread] Loaded converter: CONVERTER_interval_to_bed6_0 galaxy.datatypes.registry DEBUG 2024-02-23 13:02:34,434 [pN:main,p:71805,tN:MainThread] Loaded converter: CONVERTER_interval_to_bed12_0 galaxy.datatypes.registry DEBUG 2024-02-23 13:02:34,436 [pN:main,p:71805,tN:MainThread] Loaded converter: CONVERTER_interval_to_bgzip_0 galaxy.datatypes.registry DEBUG 2024-02-23 13:02:34,437 [pN:main,p:71805,tN:MainThread] Loaded converter: CONVERTER_interval_to_tabix_0 galaxy.datatypes.registry DEBUG 2024-02-23 13:02:34,438 [pN:main,p:71805,tN:MainThread] Loaded converter: CONVERTER_interval_to_bigwig_0 galaxy.datatypes.registry DEBUG 2024-02-23 13:02:34,438 [pN:main,p:71805,tN:MainThread] Loaded converter: CONVERTER_picard_interval_list_to_bed6 galaxy.datatypes.registry DEBUG 2024-02-23 13:02:34,439 [pN:main,p:71805,tN:MainThread] Loaded converter: CONVERTER_tar_to_directory galaxy.datatypes.registry DEBUG 2024-02-23 13:02:34,440 [pN:main,p:71805,tN:MainThread] Loaded converter: CONVERTER_uncompressed_to_gz galaxy.datatypes.registry DEBUG 2024-02-23 13:02:34,441 [pN:main,p:71805,tN:MainThread] Loaded converter: CONVERTER_gz_to_uncompressed galaxy.datatypes.registry DEBUG 2024-02-23 13:02:34,442 [pN:main,p:71805,tN:MainThread] Loaded converter: CONVERTER_uncompressed_to_gz galaxy.datatypes.registry DEBUG 2024-02-23 13:02:34,443 [pN:main,p:71805,tN:MainThread] Loaded converter: CONVERTER_gz_to_uncompressed galaxy.datatypes.registry DEBUG 2024-02-23 13:02:34,444 [pN:main,p:71805,tN:MainThread] Loaded converter: CONVERTER_uncompressed_to_gz galaxy.datatypes.registry DEBUG 2024-02-23 13:02:34,444 [pN:main,p:71805,tN:MainThread] Loaded converter: CONVERTER_gz_to_uncompressed galaxy.datatypes.registry DEBUG 2024-02-23 13:02:34,445 [pN:main,p:71805,tN:MainThread] Loaded converter: CONVERTER_maf_to_fasta_0 galaxy.datatypes.registry DEBUG 2024-02-23 13:02:34,446 [pN:main,p:71805,tN:MainThread] Loaded converter: CONVERTER_maf_to_interval_0 galaxy.datatypes.registry DEBUG 2024-02-23 13:02:34,447 [pN:main,p:71805,tN:MainThread] Loaded converter: CONVERTER_interval_to_tabix_0 galaxy.datatypes.registry DEBUG 2024-02-23 13:02:34,448 [pN:main,p:71805,tN:MainThread] Loaded converter: CONVERTER_interval_to_bgzip_0 galaxy.datatypes.registry DEBUG 2024-02-23 13:02:34,449 [pN:main,p:71805,tN:MainThread] Loaded converter: CONVERTER_bed_gff_or_vcf_to_bigwig_0 galaxy.datatypes.registry DEBUG 2024-02-23 13:02:34,451 [pN:main,p:71805,tN:MainThread] Loaded converter: CONVERTER_interval_to_bgzip_0 galaxy.datatypes.registry DEBUG 2024-02-23 13:02:34,452 [pN:main,p:71805,tN:MainThread] Loaded converter: CONVERTER_interval_to_tabix_0 galaxy.datatypes.registry DEBUG 2024-02-23 13:02:34,453 [pN:main,p:71805,tN:MainThread] Loaded converter: CONVERTER_sam_to_unsorted_bam galaxy.datatypes.registry DEBUG 2024-02-23 13:02:34,454 [pN:main,p:71805,tN:MainThread] Loaded converter: CONVERTER_bam_to_coodinate_sorted_bam galaxy.datatypes.registry DEBUG 2024-02-23 13:02:34,454 [pN:main,p:71805,tN:MainThread] Loaded converter: CONVERTER_bam_to_qname_sorted_bam galaxy.datatypes.registry DEBUG 2024-02-23 13:02:34,455 [pN:main,p:71805,tN:MainThread] Loaded converter: CONVERTER_sam_to_bigwig_0 galaxy.datatypes.registry DEBUG 2024-02-23 13:02:34,456 [pN:main,p:71805,tN:MainThread] Loaded converter: tabular_to_dbnsfp galaxy.datatypes.registry DEBUG 2024-02-23 13:02:34,456 [pN:main,p:71805,tN:MainThread] Loaded converter: tabular_to_csv galaxy.datatypes.registry DEBUG 2024-02-23 13:02:34,458 [pN:main,p:71805,tN:MainThread] Loaded converter: CONVERTER_uncompressed_to_gz galaxy.datatypes.registry DEBUG 2024-02-23 13:02:34,458 [pN:main,p:71805,tN:MainThread] Loaded converter: CONVERTER_gz_to_uncompressed galaxy.datatypes.registry DEBUG 2024-02-23 13:02:34,460 [pN:main,p:71805,tN:MainThread] Loaded converter: CONVERTER_interval_to_bgzip_0 galaxy.datatypes.registry DEBUG 2024-02-23 13:02:34,460 [pN:main,p:71805,tN:MainThread] Loaded converter: CONVERTER_vcf_to_vcf_bgzip_0 galaxy.datatypes.registry DEBUG 2024-02-23 13:02:34,462 [pN:main,p:71805,tN:MainThread] Loaded converter: CONVERTER_interval_to_tabix_0 galaxy.datatypes.registry DEBUG 2024-02-23 13:02:34,463 [pN:main,p:71805,tN:MainThread] Loaded converter: CONVERTER_bed_gff_or_vcf_to_bigwig_0 galaxy.datatypes.registry DEBUG 2024-02-23 13:02:34,464 [pN:main,p:71805,tN:MainThread] Loaded converter: CONVERTER_uncompressed_to_gz galaxy.datatypes.registry DEBUG 2024-02-23 13:02:34,464 [pN:main,p:71805,tN:MainThread] Loaded converter: CONVERTER_bcf_uncompressed_to_bcf galaxy.datatypes.registry DEBUG 2024-02-23 13:02:34,465 [pN:main,p:71805,tN:MainThread] Loaded converter: CONVERTER_bcf_uncompressed_to_bcf galaxy.datatypes.registry DEBUG 2024-02-23 13:02:34,466 [pN:main,p:71805,tN:MainThread] Loaded converter: CONVERTER_wig_to_bigwig galaxy.datatypes.registry DEBUG 2024-02-23 13:02:34,467 [pN:main,p:71805,tN:MainThread] Loaded converter: CONVERTER_wiggle_to_interval_0 galaxy.datatypes.registry DEBUG 2024-02-23 13:02:34,467 [pN:main,p:71805,tN:MainThread] Loaded converter: CONVERTER_vcf_bgzip_to_tabix_0 galaxy.datatypes.registry DEBUG 2024-02-23 13:02:34,468 [pN:main,p:71805,tN:MainThread] Loaded converter: CONVERTER_gz_to_uncompressed galaxy.datatypes.registry DEBUG 2024-02-23 13:02:34,469 [pN:main,p:71805,tN:MainThread] Loaded converter: lped2fpedconvert galaxy.datatypes.registry DEBUG 2024-02-23 13:02:34,469 [pN:main,p:71805,tN:MainThread] Loaded converter: lped2pbedconvert galaxy.datatypes.registry DEBUG 2024-02-23 13:02:34,470 [pN:main,p:71805,tN:MainThread] Loaded converter: pbed2lpedconvert galaxy.datatypes.registry DEBUG 2024-02-23 13:02:34,470 [pN:main,p:71805,tN:MainThread] Loaded converter: pbed2ldindepconvert galaxy.datatypes.registry DEBUG 2024-02-23 13:02:34,471 [pN:main,p:71805,tN:MainThread] Loaded converter: CONVERTER_uncompressed_to_gz galaxy.datatypes.registry DEBUG 2024-02-23 13:02:34,472 [pN:main,p:71805,tN:MainThread] Loaded converter: CONVERTER_gz_to_uncompressed galaxy.datatypes.registry DEBUG 2024-02-23 13:02:34,473 [pN:main,p:71805,tN:MainThread] Loaded converter: CONVERTER_biom galaxy.datatypes.registry DEBUG 2024-02-23 13:02:34,474 [pN:main,p:71805,tN:MainThread] Loaded converter: CONVERTER_biom galaxy.datatypes.registry DEBUG 2024-02-23 13:02:34,478 [pN:main,p:71805,tN:MainThread] Loaded converter: CONVERTER_molecules galaxy.datatypes.registry DEBUG 2024-02-23 13:02:34,481 [pN:main,p:71805,tN:MainThread] Loaded converter: CONVERTER_molecules galaxy.datatypes.registry DEBUG 2024-02-23 13:02:34,484 [pN:main,p:71805,tN:MainThread] Loaded converter: CONVERTER_molecules galaxy.datatypes.registry DEBUG 2024-02-23 13:02:34,485 [pN:main,p:71805,tN:MainThread] Loaded converter: CONVERTER_SMILES_to_MOL galaxy.datatypes.registry DEBUG 2024-02-23 13:02:34,488 [pN:main,p:71805,tN:MainThread] Loaded converter: CONVERTER_molecules galaxy.datatypes.registry DEBUG 2024-02-23 13:02:34,489 [pN:main,p:71805,tN:MainThread] Loaded converter: CONVERTER_smiles_to_smiles galaxy.datatypes.registry DEBUG 2024-02-23 13:02:34,492 [pN:main,p:71805,tN:MainThread] Loaded converter: CONVERTER_molecules galaxy.datatypes.registry DEBUG 2024-02-23 13:02:34,495 [pN:main,p:71805,tN:MainThread] Loaded converter: CONVERTER_molecules galaxy.datatypes.registry DEBUG 2024-02-23 13:02:34,498 [pN:main,p:71805,tN:MainThread] Loaded converter: CONVERTER_molecules galaxy.datatypes.registry DEBUG 2024-02-23 13:02:34,501 [pN:main,p:71805,tN:MainThread] Loaded converter: CONVERTER_molecules galaxy.datatypes.registry DEBUG 2024-02-23 13:02:34,505 [pN:main,p:71805,tN:MainThread] Loaded converter: CONVERTER_molecules galaxy.datatypes.registry DEBUG 2024-02-23 13:02:34,508 [pN:main,p:71805,tN:MainThread] Loaded converter: CONVERTER_molecules galaxy.datatypes.registry DEBUG 2024-02-23 13:02:34,508 [pN:main,p:71805,tN:MainThread] Loaded converter: CONVERTER_inchi_to_mol galaxy.datatypes.registry DEBUG 2024-02-23 13:02:34,511 [pN:main,p:71805,tN:MainThread] Loaded converter: CONVERTER_molecules galaxy.datatypes.registry DEBUG 2024-02-23 13:02:34,515 [pN:main,p:71805,tN:MainThread] Loaded converter: CONVERTER_molecules galaxy.datatypes.registry DEBUG 2024-02-23 13:02:34,518 [pN:main,p:71805,tN:MainThread] Loaded converter: CONVERTER_molecules galaxy.datatypes.registry DEBUG 2024-02-23 13:02:34,521 [pN:main,p:71805,tN:MainThread] Loaded converter: CONVERTER_molecules galaxy.datatypes.registry DEBUG 2024-02-23 13:02:34,524 [pN:main,p:71805,tN:MainThread] Loaded converter: CONVERTER_molecules galaxy.datatypes.registry DEBUG 2024-02-23 13:02:34,527 [pN:main,p:71805,tN:MainThread] Loaded converter: CONVERTER_molecules galaxy.datatypes.registry DEBUG 2024-02-23 13:02:34,531 [pN:main,p:71805,tN:MainThread] Loaded converter: CONVERTER_molecules galaxy.datatypes.registry DEBUG 2024-02-23 13:02:34,534 [pN:main,p:71805,tN:MainThread] Loaded converter: CONVERTER_molecules galaxy.datatypes.registry DEBUG 2024-02-23 13:02:34,537 [pN:main,p:71805,tN:MainThread] Loaded converter: CONVERTER_molecules galaxy.datatypes.registry DEBUG 2024-02-23 13:02:34,540 [pN:main,p:71805,tN:MainThread] Loaded converter: CONVERTER_molecules galaxy.datatypes.registry DEBUG 2024-02-23 13:02:34,541 [pN:main,p:71805,tN:MainThread] Loaded converter: CONVERTER_mol2_to_mol galaxy.datatypes.registry DEBUG 2024-02-23 13:02:34,544 [pN:main,p:71805,tN:MainThread] Loaded converter: CONVERTER_molecules galaxy.datatypes.registry DEBUG 2024-02-23 13:02:34,545 [pN:main,p:71805,tN:MainThread] Loaded converter: CONVERTER_cml_to_smiles galaxy.datatypes.registry DEBUG 2024-02-23 13:02:34,548 [pN:main,p:71805,tN:MainThread] Loaded converter: CONVERTER_molecules galaxy.datatypes.registry DEBUG 2024-02-23 13:02:34,551 [pN:main,p:71805,tN:MainThread] Loaded converter: CONVERTER_molecules galaxy.datatypes.registry DEBUG 2024-02-23 13:02:34,554 [pN:main,p:71805,tN:MainThread] Loaded converter: CONVERTER_molecules galaxy.datatypes.registry DEBUG 2024-02-23 13:02:34,555 [pN:main,p:71805,tN:MainThread] Loaded converter: CONVERTER_Pdb_to_Gro_0 galaxy.datatypes.registry DEBUG 2024-02-23 13:02:34,556 [pN:main,p:71805,tN:MainThread] Loaded converter: CONVERTER_mdconvert galaxy.datatypes.registry DEBUG 2024-02-23 13:02:34,557 [pN:main,p:71805,tN:MainThread] Loaded converter: CONVERTER_mdconvert galaxy.datatypes.registry DEBUG 2024-02-23 13:02:34,559 [pN:main,p:71805,tN:MainThread] Loaded converter: CONVERTER_mdconvert galaxy.datatypes.registry DEBUG 2024-02-23 13:02:34,560 [pN:main,p:71805,tN:MainThread] Loaded converter: CONVERTER_mdconvert galaxy.datatypes.registry DEBUG 2024-02-23 13:02:34,561 [pN:main,p:71805,tN:MainThread] Loaded converter: CONVERTER_mdconvert galaxy.datatypes.registry DEBUG 2024-02-23 13:02:34,562 [pN:main,p:71805,tN:MainThread] Loaded converter: CONVERTER_mdconvert galaxy.datatypes.registry DEBUG 2024-02-23 13:02:34,563 [pN:main,p:71805,tN:MainThread] Loaded converter: CONVERTER_Gro_to_Pdb_0 galaxy.datatypes.registry DEBUG 2024-02-23 13:02:34,564 [pN:main,p:71805,tN:MainThread] Loaded converter: CONVERTER_ref_to_seq_taxomony galaxy.datatypes.registry DEBUG 2024-02-23 13:02:34,564 [pN:main,p:71805,tN:MainThread] Loaded converter: CONVERTER_neostorezip_to_neostore galaxy.datatypes.registry DEBUG 2024-02-23 13:02:34,565 [pN:main,p:71805,tN:MainThread] Loaded external metadata tool: __SET_METADATA__ galaxy.tools.special_tools DEBUG 2024-02-23 13:02:34,566 [pN:main,p:71805,tN:MainThread] Loaded history export tool: __EXPORT_HISTORY__ galaxy.tools.special_tools DEBUG 2024-02-23 13:02:34,567 [pN:main,p:71805,tN:MainThread] Loaded history export to uri tool: __EXPORT_HISTORY_TO_URI__ galaxy.tools.special_tools DEBUG 2024-02-23 13:02:34,567 [pN:main,p:71805,tN:MainThread] Loaded history import tool: __IMPORT_HISTORY__ galaxy.tools.special_tools DEBUG 2024-02-23 13:02:34,568 [pN:main,p:71805,tN:MainThread] Loaded data fetch tool: __DATA_FETCH__ galaxy.visualization.plugins.registry INFO 2024-02-23 13:02:34,569 [pN:main,p:71805,tN:MainThread] VisualizationsRegistry, loaded plugin: PCA_3Dplot galaxy.visualization.plugins.registry INFO 2024-02-23 13:02:34,569 [pN:main,p:71805,tN:MainThread] VisualizationsRegistry, loaded plugin: aequatus galaxy.visualization.plugins.registry INFO 2024-02-23 13:02:34,569 [pN:main,p:71805,tN:MainThread] VisualizationsRegistry, loaded plugin: annotate_image galaxy.visualization.plugins.config_parser INFO 2024-02-23 13:02:34,570 [pN:main,p:71805,tN:MainThread] template syntax is deprecated: use entry_point instead galaxy.visualization.plugins.registry INFO 2024-02-23 13:02:34,570 [pN:main,p:71805,tN:MainThread] VisualizationsRegistry, loaded plugin: chiraviz galaxy.visualization.plugins.config_parser INFO 2024-02-23 13:02:34,571 [pN:main,p:71805,tN:MainThread] Visualizations plugin disabled: Circster. Skipping... galaxy.visualization.plugins.config_parser INFO 2024-02-23 13:02:34,571 [pN:main,p:71805,tN:MainThread] template syntax is deprecated: use entry_point instead galaxy.visualization.plugins.registry INFO 2024-02-23 13:02:34,571 [pN:main,p:71805,tN:MainThread] VisualizationsRegistry, loaded plugin: csg galaxy.visualization.plugins.registry INFO 2024-02-23 13:02:34,572 [pN:main,p:71805,tN:MainThread] VisualizationsRegistry, loaded plugin: cytoscape galaxy.visualization.plugins.registry INFO 2024-02-23 13:02:34,572 [pN:main,p:71805,tN:MainThread] VisualizationsRegistry, loaded plugin: drawrna galaxy.visualization.plugins.registry INFO 2024-02-23 13:02:34,573 [pN:main,p:71805,tN:MainThread] VisualizationsRegistry, loaded plugin: editor galaxy.visualization.plugins.registry INFO 2024-02-23 13:02:34,574 [pN:main,p:71805,tN:MainThread] VisualizationsRegistry, loaded plugin: example galaxy.visualization.plugins.config_parser INFO 2024-02-23 13:02:34,574 [pN:main,p:71805,tN:MainThread] template syntax is deprecated: use entry_point instead galaxy.visualization.plugins.registry INFO 2024-02-23 13:02:34,574 [pN:main,p:71805,tN:MainThread] VisualizationsRegistry, loaded plugin: fits_image_viewer galaxy.visualization.plugins.config_parser INFO 2024-02-23 13:02:34,575 [pN:main,p:71805,tN:MainThread] template syntax is deprecated: use entry_point instead galaxy.visualization.plugins.registry INFO 2024-02-23 13:02:34,575 [pN:main,p:71805,tN:MainThread] VisualizationsRegistry, loaded plugin: graphviz galaxy.visualization.plugins.registry INFO 2024-02-23 13:02:34,576 [pN:main,p:71805,tN:MainThread] VisualizationsRegistry, loaded plugin: h5web galaxy.visualization.plugins.registry INFO 2024-02-23 13:02:34,577 [pN:main,p:71805,tN:MainThread] VisualizationsRegistry, loaded plugin: heatmap_cluster galaxy.visualization.plugins.registry INFO 2024-02-23 13:02:34,578 [pN:main,p:71805,tN:MainThread] VisualizationsRegistry, loaded plugin: heatmap_default galaxy.visualization.plugins.config_parser INFO 2024-02-23 13:02:34,579 [pN:main,p:71805,tN:MainThread] template syntax is deprecated: use entry_point instead galaxy.visualization.plugins.registry INFO 2024-02-23 13:02:34,579 [pN:main,p:71805,tN:MainThread] VisualizationsRegistry, loaded plugin: hivtrace galaxy.visualization.plugins.config_parser INFO 2024-02-23 13:02:34,579 [pN:main,p:71805,tN:MainThread] template syntax is deprecated: use entry_point instead galaxy.visualization.plugins.registry INFO 2024-02-23 13:02:34,579 [pN:main,p:71805,tN:MainThread] VisualizationsRegistry, loaded plugin: hyphyvision galaxy.visualization.plugins.registry INFO 2024-02-23 13:02:34,581 [pN:main,p:71805,tN:MainThread] VisualizationsRegistry, loaded plugin: jqplot_bar galaxy.visualization.plugins.registry INFO 2024-02-23 13:02:34,582 [pN:main,p:71805,tN:MainThread] VisualizationsRegistry, loaded plugin: jqplot_box galaxy.visualization.plugins.registry INFO 2024-02-23 13:02:34,583 [pN:main,p:71805,tN:MainThread] VisualizationsRegistry, loaded plugin: jqplot_histogram galaxy.visualization.plugins.registry INFO 2024-02-23 13:02:34,584 [pN:main,p:71805,tN:MainThread] VisualizationsRegistry, loaded plugin: jqplot_line galaxy.visualization.plugins.registry INFO 2024-02-23 13:02:34,585 [pN:main,p:71805,tN:MainThread] VisualizationsRegistry, loaded plugin: jqplot_scatter galaxy.visualization.plugins.config_parser INFO 2024-02-23 13:02:34,586 [pN:main,p:71805,tN:MainThread] template syntax is deprecated: use entry_point instead galaxy.visualization.plugins.registry INFO 2024-02-23 13:02:34,586 [pN:main,p:71805,tN:MainThread] VisualizationsRegistry, loaded plugin: audio_player galaxy.visualization.plugins.config_parser INFO 2024-02-23 13:02:34,586 [pN:main,p:71805,tN:MainThread] template syntax is deprecated: use entry_point instead galaxy.visualization.plugins.registry INFO 2024-02-23 13:02:34,586 [pN:main,p:71805,tN:MainThread] VisualizationsRegistry, loaded plugin: video_player galaxy.visualization.plugins.registry INFO 2024-02-23 13:02:34,587 [pN:main,p:71805,tN:MainThread] VisualizationsRegistry, loaded plugin: msa galaxy.visualization.plugins.config_parser INFO 2024-02-23 13:02:34,587 [pN:main,p:71805,tN:MainThread] template syntax is deprecated: use entry_point instead galaxy.visualization.plugins.registry INFO 2024-02-23 13:02:34,587 [pN:main,p:71805,tN:MainThread] VisualizationsRegistry, loaded plugin: mvpapp galaxy.visualization.plugins.registry INFO 2024-02-23 13:02:34,588 [pN:main,p:71805,tN:MainThread] VisualizationsRegistry, loaded plugin: ngl galaxy.visualization.plugins.registry INFO 2024-02-23 13:02:34,589 [pN:main,p:71805,tN:MainThread] VisualizationsRegistry, loaded plugin: nora galaxy.visualization.plugins.registry INFO 2024-02-23 13:02:34,590 [pN:main,p:71805,tN:MainThread] VisualizationsRegistry, loaded plugin: nvd3_bar galaxy.visualization.plugins.registry INFO 2024-02-23 13:02:34,592 [pN:main,p:71805,tN:MainThread] VisualizationsRegistry, loaded plugin: nvd3_bar_stacked galaxy.visualization.plugins.registry INFO 2024-02-23 13:02:34,593 [pN:main,p:71805,tN:MainThread] VisualizationsRegistry, loaded plugin: nvd3_histogram galaxy.visualization.plugins.registry INFO 2024-02-23 13:02:34,594 [pN:main,p:71805,tN:MainThread] VisualizationsRegistry, loaded plugin: nvd3_histogram_discrete galaxy.visualization.plugins.registry INFO 2024-02-23 13:02:34,595 [pN:main,p:71805,tN:MainThread] VisualizationsRegistry, loaded plugin: nvd3_horizontal galaxy.visualization.plugins.registry INFO 2024-02-23 13:02:34,596 [pN:main,p:71805,tN:MainThread] VisualizationsRegistry, loaded plugin: nvd3_horizontal_stacked galaxy.visualization.plugins.registry INFO 2024-02-23 13:02:34,598 [pN:main,p:71805,tN:MainThread] VisualizationsRegistry, loaded plugin: nvd3_line galaxy.visualization.plugins.registry INFO 2024-02-23 13:02:34,599 [pN:main,p:71805,tN:MainThread] VisualizationsRegistry, loaded plugin: nvd3_line_focus galaxy.visualization.plugins.registry INFO 2024-02-23 13:02:34,600 [pN:main,p:71805,tN:MainThread] VisualizationsRegistry, loaded plugin: nvd3_pie galaxy.visualization.plugins.registry INFO 2024-02-23 13:02:34,601 [pN:main,p:71805,tN:MainThread] VisualizationsRegistry, loaded plugin: nvd3_scatter galaxy.visualization.plugins.registry INFO 2024-02-23 13:02:34,602 [pN:main,p:71805,tN:MainThread] VisualizationsRegistry, loaded plugin: nvd3_stackedarea galaxy.visualization.plugins.registry INFO 2024-02-23 13:02:34,604 [pN:main,p:71805,tN:MainThread] VisualizationsRegistry, loaded plugin: nvd3_stackedarea_full galaxy.visualization.plugins.registry INFO 2024-02-23 13:02:34,605 [pN:main,p:71805,tN:MainThread] VisualizationsRegistry, loaded plugin: nvd3_stackedarea_stream galaxy.visualization.plugins.registry INFO 2024-02-23 13:02:34,605 [pN:main,p:71805,tN:MainThread] VisualizationsRegistry, loaded plugin: openlayers galaxy.visualization.plugins.registry INFO 2024-02-23 13:02:34,606 [pN:main,p:71805,tN:MainThread] VisualizationsRegistry, loaded plugin: openseadragon galaxy.visualization.plugins.registry INFO 2024-02-23 13:02:34,607 [pN:main,p:71805,tN:MainThread] VisualizationsRegistry, loaded plugin: phylocanvas galaxy.visualization.plugins.registry INFO 2024-02-23 13:02:34,607 [pN:main,p:71805,tN:MainThread] VisualizationsRegistry, loaded plugin: phyloviz galaxy.visualization.plugins.registry INFO 2024-02-23 13:02:34,608 [pN:main,p:71805,tN:MainThread] VisualizationsRegistry, loaded plugin: pv galaxy.visualization.plugins.registry INFO 2024-02-23 13:02:34,608 [pN:main,p:71805,tN:MainThread] VisualizationsRegistry, loaded plugin: scatterplot galaxy.visualization.plugins.config_parser INFO 2024-02-23 13:02:34,609 [pN:main,p:71805,tN:MainThread] Visualizations plugin disabled: Sweepster. Skipping... galaxy.visualization.plugins.registry INFO 2024-02-23 13:02:34,609 [pN:main,p:71805,tN:MainThread] VisualizationsRegistry, loaded plugin: trackster galaxy.visualization.plugins.registry INFO 2024-02-23 13:02:34,609 [pN:main,p:71805,tN:MainThread] VisualizationsRegistry, loaded plugin: ts_visjs galaxy.visualization.plugins.config_parser INFO 2024-02-23 13:02:34,609 [pN:main,p:71805,tN:MainThread] template syntax is deprecated: use entry_point instead galaxy.visualization.plugins.registry INFO 2024-02-23 13:02:34,610 [pN:main,p:71805,tN:MainThread] VisualizationsRegistry, loaded plugin: unipept galaxy.visualization.plugins.registry INFO 2024-02-23 13:02:34,610 [pN:main,p:71805,tN:MainThread] VisualizationsRegistry, loaded plugin: venn galaxy.tours._impl INFO 2024-02-23 13:02:34,625 [pN:main,p:71805,tN:MainThread] Loaded tour 'core.galaxy_ui' galaxy.tours._impl INFO 2024-02-23 13:02:34,636 [pN:main,p:71805,tN:MainThread] Loaded tour 'core.deferred' galaxy.tours._impl INFO 2024-02-23 13:02:34,644 [pN:main,p:71805,tN:MainThread] Loaded tour 'core.history' galaxy.tours._impl INFO 2024-02-23 13:02:34,651 [pN:main,p:71805,tN:MainThread] Loaded tour 'core.windows' galaxy.workflow.scheduling_manager INFO 2024-02-23 13:02:34,655 [pN:main,p:71805,tN:MainThread] No workflow schedulers plugin config file defined, using default scheduler. galaxy.web_stack.handlers INFO 2024-02-23 13:02:34,655 [pN:main,p:71805,tN:MainThread] WorkflowSchedulingManager: No job handler assignment method is set, defaulting to 'HANDLER_ASSIGNMENT_METHODS.DB_SKIP_LOCKED', set the `assign_with` attribute on <handlers> to override the default galaxy.workflow.scheduling_manager DEBUG 2024-02-23 13:02:34,655 [pN:main,p:71805,tN:MainThread] Starting workflow schedulers galaxy.app INFO 2024-02-23 13:02:34,656 [pN:main,p:71805,tN:MainThread] Galaxy app startup finished (2214.536 ms) galaxy.web.framework.base DEBUG 2024-02-23 13:02:34,673 [pN:main,p:71805,tN:MainThread] Enabling 'user' controller, class: User galaxy.web.framework.base DEBUG 2024-02-23 13:02:34,673 [pN:main,p:71805,tN:MainThread] Enabling 'data_manager' controller, class: DataManager galaxy.web.framework.base DEBUG 2024-02-23 13:02:34,674 [pN:main,p:71805,tN:MainThread] Enabling 'async' controller, class: ASync galaxy.web.framework.base DEBUG 2024-02-23 13:02:34,674 [pN:main,p:71805,tN:MainThread] Enabling 'tag' controller, class: TagsController galaxy.web.framework.base DEBUG 2024-02-23 13:02:34,677 [pN:main,p:71805,tN:MainThread] Enabling 'page' controller, class: PageController galaxy.web.framework.base DEBUG 2024-02-23 13:02:34,677 [pN:main,p:71805,tN:MainThread] Enabling 'root' controller, class: RootController galaxy.web.framework.base DEBUG 2024-02-23 13:02:34,678 [pN:main,p:71805,tN:MainThread] Enabling 'tool_runner' controller, class: ToolRunner galaxy.web.framework.base DEBUG 2024-02-23 13:02:34,678 [pN:main,p:71805,tN:MainThread] Enabling 'error' controller, class: Error galaxy.web.framework.base DEBUG 2024-02-23 13:02:34,678 [pN:main,p:71805,tN:MainThread] Enabling 'forms' controller, class: Forms galaxy.web.framework.base DEBUG 2024-02-23 13:02:34,687 [pN:main,p:71805,tN:MainThread] Enabling 'admin_toolshed' controller, class: AdminGalaxy galaxy.web.framework.base DEBUG 2024-02-23 13:02:34,688 [pN:main,p:71805,tN:MainThread] Enabling 'admin_toolshed' controller, class: AdminToolshed galaxy.web.framework.base DEBUG 2024-02-23 13:02:34,688 [pN:main,p:71805,tN:MainThread] Enabling 'visualization' controller, class: VisualizationController galaxy.web.framework.base DEBUG 2024-02-23 13:02:34,689 [pN:main,p:71805,tN:MainThread] Enabling 'shed_tool_static' controller, class: ShedToolStatic galaxy.web.framework.base DEBUG 2024-02-23 13:02:34,689 [pN:main,p:71805,tN:MainThread] Enabling 'authnz' controller, class: JSAppLauncher galaxy.web.framework.base DEBUG 2024-02-23 13:02:34,689 [pN:main,p:71805,tN:MainThread] Enabling 'authnz' controller, class: OIDC galaxy.web.framework.base DEBUG 2024-02-23 13:02:34,690 [pN:main,p:71805,tN:MainThread] Enabling 'workflow' controller, class: WorkflowController galaxy.web.framework.base DEBUG 2024-02-23 13:02:34,691 [pN:main,p:71805,tN:MainThread] Enabling 'history' controller, class: HistoryController galaxy.web.framework.base DEBUG 2024-02-23 13:02:34,709 [pN:main,p:71805,tN:MainThread] Enabling 'dataset' controller, class: DatasetInterface galaxy.web.framework.base DEBUG 2024-02-23 13:02:34,709 [pN:main,p:71805,tN:MainThread] Enabling 'admin' controller, class: AdminGalaxy galaxy.web.framework.base DEBUG 2024-02-23 13:02:35,147 [pN:main,p:71805,tN:MainThread] Enabling 'library_datasets' API controller, class: LibraryDatasetsController galaxy.web.framework.base DEBUG 2024-02-23 13:02:35,243 [pN:main,p:71805,tN:MainThread] Enabling 'jobs' API controller, class: JobController galaxy.web.framework.base DEBUG 2024-02-23 13:02:35,319 [pN:main,p:71805,tN:MainThread] Enabling 'job_files' API controller, class: JobFilesAPIController galaxy.web.framework.base DEBUG 2024-02-23 13:02:35,349 [pN:main,p:71805,tN:MainThread] Enabling 'toolshed' API controller, class: ToolShedController galaxy.web.framework.base DEBUG 2024-02-23 13:02:35,359 [pN:main,p:71805,tN:MainThread] Enabling 'tools' API controller, class: ToolsController galaxy.web.framework.base DEBUG 2024-02-23 13:02:35,437 [pN:main,p:71805,tN:MainThread] Enabling 'trs_consumer' API controller, class: TrsConsumeAPIController galaxy.web.framework.base DEBUG 2024-02-23 13:02:35,437 [pN:main,p:71805,tN:MainThread] Enabling 'history_dataset_extended_metadata' API controller, class: HistoryDatasetExtendMetadataController galaxy.web.framework.base DEBUG 2024-02-23 13:02:35,437 [pN:main,p:71805,tN:MainThread] Enabling 'library_dataset_extended_metadata' API controller, class: LibraryDatasetExtendMetadataController galaxy.web.framework.base DEBUG 2024-02-23 13:02:35,438 [pN:main,p:71805,tN:MainThread] Enabling 'container_resolution' API controller, class: ContainerResolutionAPIController galaxy.web.framework.base DEBUG 2024-02-23 13:02:35,438 [pN:main,p:71805,tN:MainThread] Enabling 'job_ports' API controller, class: JobPortsAPIController galaxy.web.framework.base DEBUG 2024-02-23 13:02:35,439 [pN:main,p:71805,tN:MainThread] Enabling 'tool_dependencies' API controller, class: ToolDependenciesAPIController galaxy.web.framework.base DEBUG 2024-02-23 13:02:35,525 [pN:main,p:71805,tN:MainThread] Enabling 'history_content_provenance' API controller, class: HDAProvenanceController galaxy.web.framework.base DEBUG 2024-02-23 13:02:35,525 [pN:main,p:71805,tN:MainThread] Enabling 'ldda_provenance' API controller, class: LDDAProvenanceController galaxy.web.framework.base DEBUG 2024-02-23 13:02:35,525 [pN:main,p:71805,tN:MainThread] Enabling 'tool_entry_points' API controller, class: ToolEntryPointsAPIController galaxy.web.framework.base DEBUG 2024-02-23 13:02:35,612 [pN:main,p:71805,tN:MainThread] Enabling 'authenticate' API controller, class: AuthenticationController galaxy.web.framework.base DEBUG 2024-02-23 13:02:35,872 [pN:main,p:71805,tN:MainThread] Enabling 'trs_search' API controller, class: TrsSearchAPIController galaxy.web.framework.base DEBUG 2024-02-23 13:02:35,905 [pN:main,p:71805,tN:MainThread] Enabling 'tool_shed_repositories' API controller, class: ToolShedRepositoriesController galaxy.web.framework.base DEBUG 2024-02-23 13:02:36,022 [pN:main,p:71805,tN:MainThread] Enabling 'forms' API controller, class: FormDefinitionAPIController galaxy.web.framework.base DEBUG 2024-02-23 13:02:36,195 [pN:main,p:71805,tN:MainThread] Enabling 'workflows' API controller, class: WorkflowsAPIController galaxy.web.framework.base DEBUG 2024-02-23 13:02:36,195 [pN:main,p:71805,tN:MainThread] Enabling 'uploads' API controller, class: UploadsAPIController galaxy.web.framework.base DEBUG 2024-02-23 13:02:36,689 [pN:main,p:71805,tN:MainThread] Enabling 'history_annotations' API controller, class: HistoryAnnotationsController galaxy.web.framework.base DEBUG 2024-02-23 13:02:36,690 [pN:main,p:71805,tN:MainThread] Enabling 'history_content_annotations' API controller, class: HistoryContentAnnotationsController galaxy.web.framework.base DEBUG 2024-02-23 13:02:36,690 [pN:main,p:71805,tN:MainThread] Enabling 'workflow_annotations' API controller, class: WorkflowAnnotationsController galaxy.web.framework.base DEBUG 2024-02-23 13:02:36,735 [pN:main,p:71805,tN:MainThread] Enabling 'visualizations' API controller, class: VisualizationsController galaxy.web.framework.base DEBUG 2024-02-23 13:02:36,735 [pN:main,p:71805,tN:MainThread] Enabling 'sanitize_allow' API controller, class: SanitizeAllowController galaxy.web.framework.base DEBUG 2024-02-23 13:02:36,736 [pN:main,p:71805,tN:MainThread] Enabling 'page_revisions' API controller, class: PageRevisionsController galaxy.web.framework.base DEBUG 2024-02-23 13:02:36,806 [pN:main,p:71805,tN:MainThread] Enabling 'library_contents' API controller, class: LibraryContentsController galaxy.web.framework.base DEBUG 2024-02-23 13:02:36,926 [pN:main,p:71805,tN:MainThread] Enabling 'users' API controller, class: UserAPIController galaxy.web.framework.base DEBUG 2024-02-23 13:02:36,927 [pN:main,p:71805,tN:MainThread] Enabling 'cloudauthz' API controller, class: CloudAuthzController galaxy.web.framework.base DEBUG 2024-02-23 13:02:36,927 [pN:main,p:71805,tN:MainThread] Enabling 'webhooks' API controller, class: WebhooksController galaxy.web.framework.base DEBUG 2024-02-23 13:02:37,002 [pN:main,p:71805,tN:MainThread] Enabling 'plugins' API controller, class: PluginsController galaxy.web.framework.base DEBUG 2024-02-23 13:02:37,038 [pN:main,p:71805,tN:MainThread] Enabling 'dynamic_tools' API controller, class: DynamicToolsController galaxy.webapps.util DEBUG 2024-02-23 13:02:37,320 [pN:main,p:71805,tN:MainThread] Enabling 'paste.httpexceptions' middleware galaxy.webapps.util DEBUG 2024-02-23 13:02:37,321 [pN:main,p:71805,tN:MainThread] Enabling 'RemoteUser' middleware galaxy.webapps.util DEBUG 2024-02-23 13:02:37,321 [pN:main,p:71805,tN:MainThread] Enabling 'ErrorMiddleware' middleware galaxy.webapps.util DEBUG 2024-02-23 13:02:37,321 [pN:main,p:71805,tN:MainThread] Enabling 'TusMiddleware' middleware galaxy.webapps.util DEBUG 2024-02-23 13:02:37,321 [pN:main,p:71805,tN:MainThread] Enabling 'XForwardedHostMiddleware' middleware galaxy.webapps.util DEBUG 2024-02-23 13:02:37,321 [pN:main,p:71805,tN:MainThread] Enabling 'RequestIDMiddleware' middleware galaxy.webapps.util DEBUG 2024-02-23 13:02:37,321 [pN:main,p:71805,tN:MainThread] Enabling 'build_url_map' middleware galaxy.webapps.galaxy.buildapp DEBUG 2024-02-23 13:02:37,321 [pN:main,p:71805,tN:MainThread] Prior to webapp return, Galaxy thread <_MainThread(MainThread, started 139634151147328)> is alive. galaxy.web_stack DEBUG 2024-02-23 13:02:38,927 [pN:main.1,p:72010,tN:Thread-2] server_name set to: main.1 galaxy.jobs.manager DEBUG 2024-02-23 13:02:38,930 [pN:main.1,p:72010,tN:Thread-2] Initializing job handler galaxy.jobs INFO 2024-02-23 13:02:38,930 [pN:main.1,p:72010,tN:Thread-2] Handler 'main.1' will load all configured runner plugins galaxy.jobs.runners.state_handler_factory DEBUG 2024-02-23 13:02:38,948 [pN:main.1,p:72010,tN:Thread-2] Loaded 'failure' state handler from module galaxy.jobs.runners.state_handlers.resubmit galaxy.jobs DEBUG 2024-02-23 13:02:38,948 [pN:main.1,p:72010,tN:Thread-2] Loaded job runner 'galaxy.jobs.runners.local:LocalJobRunner' as 'local' galaxy.jobs.handler DEBUG 2024-02-23 13:02:38,949 [pN:main.1,p:72010,tN:Thread-2] Loaded job runners plugins: local galaxy.jobs.runners DEBUG 2024-02-23 13:02:38,949 [pN:main.1,p:72010,tN:Thread-2] Starting 4 LocalRunner workers galaxy.jobs.handler DEBUG 2024-02-23 13:02:38,962 [pN:main.1,p:72010,tN:Thread-2] Handler queue starting for jobs assigned to handler: main.1 galaxy.jobs.handler INFO 2024-02-23 13:02:38,992 [pN:main.1,p:72010,tN:JobHandlerQueue.monitor_thread] Handler job grabber initialized with 'HANDLER_ASSIGNMENT_METHODS.DB_SKIP_LOCKED' assignment method for handler 'main.1', tag(s): galaxy.jobs.handler INFO 2024-02-23 13:02:38,992 [pN:main.1,p:72010,tN:Thread-2] job handler queue started galaxy.jobs.handler INFO 2024-02-23 13:02:38,997 [pN:main.1,p:72010,tN:Thread-2] job handler stop queue started galaxy.jobs.handler INFO 2024-02-23 13:02:38,999 [pN:main.1,p:72010,tN:WorkflowRequestMonitor.monitor_thread] Handler job grabber initialized with 'HANDLER_ASSIGNMENT_METHODS.DB_SKIP_LOCKED' assignment method for handler 'main.1', tag(s): None, _default_ galaxy.queue_worker INFO 2024-02-23 13:02:39,005 [pN:main.1,p:72010,tN:Thread-2] Binding and starting galaxy control worker for main.1 galaxy.queue_worker DEBUG 2024-02-23 13:02:39,023 [pN:main.1,p:72010,tN:Thread-2] Executing toolbox reload on 'main.1' galaxy.util WARNING 2024-02-23 13:02:39,059 [pN:main.1,p:72010,tN:Thread-2] directory not found: /scratch/rico/galaxy/lib/galaxy/util/../../../config/plugins/activities galaxy.tools WARNING 2024-02-23 13:02:39,061 [pN:main.1,p:72010,tN:Thread-2] The default shed tool config file (/tmp/tmpup6p245_/shed_tool_conf.xml) has been added to the tool_config_file option, if this is not the desired behavior, please set shed_tool_config_file to your primary shed-enabled tool config file galaxy.tool_util.toolbox.base INFO 2024-02-23 13:02:39,061 [pN:main.1,p:72010,tN:Thread-2] Parsing the tool configuration /tmp/tmpup6p245_/tool_conf.xml galaxy.tool_util.toolbox.base DEBUG 2024-02-23 13:02:39,061 [pN:main.1,p:72010,tN:Thread-2] Tool path for tool configuration /tmp/tmpup6p245_/tool_conf.xml is None galaxy.tools WARNING 2024-02-23 13:02:39,062 [pN:main.1,p:72010,tN:Thread-2] The default shed tool config file (/tmp/tmpup6p245_/shed_tool_conf.xml) has been added to the tool_config_file option, if this is not the desired behavior, please set shed_tool_config_file to your primary shed-enabled tool config file galaxy.tool_util.toolbox.base INFO 2024-02-23 13:02:39,062 [pN:main.1,p:72010,tN:Thread-2] Parsing the tool configuration /tmp/tmpup6p245_/shed_tools_conf.xml galaxy.tool_util.toolbox.base DEBUG 2024-02-23 13:02:39,062 [pN:main.1,p:72010,tN:Thread-2] Tool path for shed tool configuration /tmp/tmpup6p245_/shed_tools_conf.xml is /tmp/tmpup6p245_/shed_tools galaxy.tools WARNING 2024-02-23 13:02:39,062 [pN:main.1,p:72010,tN:Thread-2] The default shed tool config file (/tmp/tmpup6p245_/shed_tool_conf.xml) has been added to the tool_config_file option, if this is not the desired behavior, please set shed_tool_config_file to your primary shed-enabled tool config file galaxy.tool_util.toolbox.base INFO 2024-02-23 13:02:39,063 [pN:main.1,p:72010,tN:Thread-2] Parsing the tool configuration /tmp/tmpup6p245_/empty_tool_conf.xml galaxy.tool_util.toolbox.base DEBUG 2024-02-23 13:02:39,063 [pN:main.1,p:72010,tN:Thread-2] Tool path for tool configuration /tmp/tmpup6p245_/empty_tool_conf.xml is None galaxy.tool_util.toolbox.base DEBUG 2024-02-23 13:02:39,063 [pN:main.1,p:72010,tN:Thread-2] Reading tools from config files finished (2.649 ms) galaxy.tool_util.toolbox.base DEBUG 2024-02-23 13:02:39,063 [pN:main.1,p:72010,tN:Thread-2] Loaded tool id: upload1, version: 1.1.7 into tool panel.. galaxy.tool_util.toolbox.base DEBUG 2024-02-23 13:02:39,064 [pN:main.1,p:72010,tN:Thread-2] Loading tool panel finished (0.535 ms) galaxy.tool_util.toolbox.base DEBUG 2024-02-23 13:02:39,069 [pN:main.1,p:72010,tN:Thread-2] Loaded tool id: upload1, version: 1.1.7 into tool panel.. galaxy.tool_util.toolbox.views.edam DEBUG 2024-02-23 13:02:39,070 [pN:main.1,p:72010,tN:Thread-2] Loading EDAM tool panel finished (5.573 ms) galaxy.tool_util.toolbox.base DEBUG 2024-02-23 13:02:39,072 [pN:main.1,p:72010,tN:Thread-2] Loaded tool id: upload1, version: 1.1.7 into tool panel.. galaxy.tool_util.toolbox.views.edam DEBUG 2024-02-23 13:02:39,073 [pN:main.1,p:72010,tN:Thread-2] Loading EDAM tool panel finished (3.141 ms) galaxy.datatypes.registry DEBUG 2024-02-23 13:02:39,085 [pN:main.1,p:72010,tN:Thread-2] Loaded converter: CONVERTER_uncompressed_to_gz galaxy.datatypes.registry DEBUG 2024-02-23 13:02:39,085 [pN:main.1,p:72010,tN:Thread-2] Loaded converter: CONVERTER_gz_to_uncompressed galaxy.datatypes.registry DEBUG 2024-02-23 13:02:39,086 [pN:main.1,p:72010,tN:Thread-2] Loaded converter: CONVERTER_uncompressed_to_gz galaxy.datatypes.registry DEBUG 2024-02-23 13:02:39,086 [pN:main.1,p:72010,tN:Thread-2] Loaded converter: CONVERTER_gz_to_uncompressed galaxy.datatypes.registry DEBUG 2024-02-23 13:02:39,086 [pN:main.1,p:72010,tN:Thread-2] Loaded converter: CONVERTER_uncompressed_to_gz galaxy.datatypes.registry DEBUG 2024-02-23 13:02:39,086 [pN:main.1,p:72010,tN:Thread-2] Loaded converter: CONVERTER_gz_to_uncompressed galaxy.datatypes.registry DEBUG 2024-02-23 13:02:39,086 [pN:main.1,p:72010,tN:Thread-2] Loaded converter: CONVERTER_Bam_Bai_0 galaxy.datatypes.registry DEBUG 2024-02-23 13:02:39,087 [pN:main.1,p:72010,tN:Thread-2] Loaded converter: CONVERTER_bam_to_bigwig_0 galaxy.datatypes.registry DEBUG 2024-02-23 13:02:39,092 [pN:main.1,p:72010,tN:Thread-2] Loaded converter: CONVERTER_bam_to_qname_sorted_bam galaxy.datatypes.registry DEBUG 2024-02-23 13:02:39,092 [pN:main.1,p:72010,tN:Thread-2] Loaded converter: CONVERTER_bam_to_bigwig_0 galaxy.datatypes.registry DEBUG 2024-02-23 13:02:39,093 [pN:main.1,p:72010,tN:Thread-2] Loaded converter: CONVERTER_bam_to_coodinate_sorted_bam galaxy.datatypes.registry DEBUG 2024-02-23 13:02:39,093 [pN:main.1,p:72010,tN:Thread-2] Loaded converter: CONVERTER_bam_to_qname_sorted_bam galaxy.datatypes.registry DEBUG 2024-02-23 13:02:39,093 [pN:main.1,p:72010,tN:Thread-2] Loaded converter: CONVERTER_cram_to_bam_0 galaxy.datatypes.registry DEBUG 2024-02-23 13:02:39,093 [pN:main.1,p:72010,tN:Thread-2] Loaded converter: CONVERTER_bed_to_gff_0 galaxy.datatypes.registry DEBUG 2024-02-23 13:02:39,094 [pN:main.1,p:72010,tN:Thread-2] Loaded converter: CONVERTER_interval_to_bgzip_0 galaxy.datatypes.registry DEBUG 2024-02-23 13:02:39,094 [pN:main.1,p:72010,tN:Thread-2] Loaded converter: CONVERTER_interval_to_tabix_0 galaxy.datatypes.registry DEBUG 2024-02-23 13:02:39,100 [pN:main.1,p:72010,tN:Thread-2] Loaded converter: CONVERTER_bed_gff_or_vcf_to_bigwig_0 galaxy.datatypes.registry DEBUG 2024-02-23 13:02:39,100 [pN:main.1,p:72010,tN:Thread-2] Loaded converter: CONVERTER_bed_to_fli_0 galaxy.datatypes.registry DEBUG 2024-02-23 13:02:39,100 [pN:main.1,p:72010,tN:Thread-2] Loaded converter: CONVERTER_bedgraph_to_bigwig galaxy.datatypes.registry DEBUG 2024-02-23 13:02:39,100 [pN:main.1,p:72010,tN:Thread-2] Loaded converter: CONVERTER_len_to_linecount galaxy.datatypes.registry DEBUG 2024-02-23 13:02:39,100 [pN:main.1,p:72010,tN:Thread-2] Loaded converter: CONVERTER_parquet_to_csv galaxy.datatypes.registry DEBUG 2024-02-23 13:02:39,101 [pN:main.1,p:72010,tN:Thread-2] Loaded converter: bigwigtowig galaxy.datatypes.registry DEBUG 2024-02-23 13:02:39,101 [pN:main.1,p:72010,tN:Thread-2] Loaded converter: CONVERTER_interval_to_bgzip_0 galaxy.datatypes.registry DEBUG 2024-02-23 13:02:39,101 [pN:main.1,p:72010,tN:Thread-2] Loaded converter: CONVERTER_interval_to_tabix_0 galaxy.datatypes.registry DEBUG 2024-02-23 13:02:39,101 [pN:main.1,p:72010,tN:Thread-2] Loaded converter: CONVERTER_bed_gff_or_vcf_to_bigwig_0 galaxy.datatypes.registry DEBUG 2024-02-23 13:02:39,101 [pN:main.1,p:72010,tN:Thread-2] Loaded converter: csv_to_tabular galaxy.datatypes.registry DEBUG 2024-02-23 13:02:39,102 [pN:main.1,p:72010,tN:Thread-2] Loaded converter: tabular_to_csv galaxy.datatypes.registry DEBUG 2024-02-23 13:02:39,102 [pN:main.1,p:72010,tN:Thread-2] Loaded converter: CONVERTER_fasta_to_tabular galaxy.datatypes.registry DEBUG 2024-02-23 13:02:39,102 [pN:main.1,p:72010,tN:Thread-2] Loaded converter: CONVERTER_fasta_to_bowtie_base_index galaxy.datatypes.registry DEBUG 2024-02-23 13:02:39,102 [pN:main.1,p:72010,tN:Thread-2] Loaded converter: CONVERTER_fasta_to_bowtie_color_index galaxy.datatypes.registry DEBUG 2024-02-23 13:02:39,112 [pN:main.1,p:72010,tN:Thread-2] Loaded converter: CONVERTER_fasta_to_2bit galaxy.datatypes.registry DEBUG 2024-02-23 13:02:39,112 [pN:main.1,p:72010,tN:Thread-2] Loaded converter: CONVERTER_fasta_to_len galaxy.datatypes.registry DEBUG 2024-02-23 13:02:39,112 [pN:main.1,p:72010,tN:Thread-2] Loaded converter: CONVERTER_fasta_to_fai galaxy.datatypes.registry DEBUG 2024-02-23 13:02:39,113 [pN:main.1,p:72010,tN:Thread-2] Loaded converter: CONVERTER_uncompressed_to_gz galaxy.datatypes.registry DEBUG 2024-02-23 13:02:39,113 [pN:main.1,p:72010,tN:Thread-2] Loaded converter: CONVERTER_gz_to_uncompressed galaxy.datatypes.registry DEBUG 2024-02-23 13:02:39,114 [pN:main.1,p:72010,tN:Thread-2] Loaded converter: CONVERTER_fastq_to_fqtoc0 galaxy.datatypes.registry DEBUG 2024-02-23 13:02:39,114 [pN:main.1,p:72010,tN:Thread-2] Loaded converter: CONVERTER_uncompressed_to_gz galaxy.datatypes.registry DEBUG 2024-02-23 13:02:39,115 [pN:main.1,p:72010,tN:Thread-2] Loaded converter: CONVERTER_gz_to_uncompressed galaxy.datatypes.registry DEBUG 2024-02-23 13:02:39,115 [pN:main.1,p:72010,tN:Thread-2] Loaded converter: CONVERTER_bz2_to_uncompressed galaxy.datatypes.registry DEBUG 2024-02-23 13:02:39,116 [pN:main.1,p:72010,tN:Thread-2] Loaded converter: CONVERTER_fastq_to_fqtoc0 galaxy.datatypes.registry DEBUG 2024-02-23 13:02:39,116 [pN:main.1,p:72010,tN:Thread-2] Loaded converter: CONVERTER_uncompressed_to_gz galaxy.datatypes.registry DEBUG 2024-02-23 13:02:39,117 [pN:main.1,p:72010,tN:Thread-2] Loaded converter: CONVERTER_gz_to_uncompressed galaxy.datatypes.registry DEBUG 2024-02-23 13:02:39,117 [pN:main.1,p:72010,tN:Thread-2] Loaded converter: CONVERTER_bz2_to_uncompressed galaxy.datatypes.registry DEBUG 2024-02-23 13:02:39,118 [pN:main.1,p:72010,tN:Thread-2] Loaded converter: CONVERTER_fastq_to_fqtoc0 galaxy.datatypes.registry DEBUG 2024-02-23 13:02:39,118 [pN:main.1,p:72010,tN:Thread-2] Loaded converter: CONVERTER_uncompressed_to_gz galaxy.datatypes.registry DEBUG 2024-02-23 13:02:39,119 [pN:main.1,p:72010,tN:Thread-2] Loaded converter: CONVERTER_gz_to_uncompressed galaxy.datatypes.registry DEBUG 2024-02-23 13:02:39,119 [pN:main.1,p:72010,tN:Thread-2] Loaded converter: CONVERTER_bz2_to_uncompressed galaxy.datatypes.registry DEBUG 2024-02-23 13:02:39,120 [pN:main.1,p:72010,tN:Thread-2] Loaded converter: CONVERTER_fastq_to_fqtoc0 galaxy.datatypes.registry DEBUG 2024-02-23 13:02:39,120 [pN:main.1,p:72010,tN:Thread-2] Loaded converter: CONVERTER_uncompressed_to_gz galaxy.datatypes.registry DEBUG 2024-02-23 13:02:39,120 [pN:main.1,p:72010,tN:Thread-2] Loaded converter: CONVERTER_gz_to_uncompressed galaxy.datatypes.registry DEBUG 2024-02-23 13:02:39,120 [pN:main.1,p:72010,tN:Thread-2] Loaded converter: CONVERTER_bz2_to_uncompressed galaxy.datatypes.registry DEBUG 2024-02-23 13:02:39,121 [pN:main.1,p:72010,tN:Thread-2] Loaded converter: CONVERTER_fastq_to_fqtoc0 galaxy.datatypes.registry DEBUG 2024-02-23 13:02:39,121 [pN:main.1,p:72010,tN:Thread-2] Loaded converter: CONVERTER_uncompressed_to_gz galaxy.datatypes.registry DEBUG 2024-02-23 13:02:39,121 [pN:main.1,p:72010,tN:Thread-2] Loaded converter: CONVERTER_gz_to_uncompressed galaxy.datatypes.registry DEBUG 2024-02-23 13:02:39,121 [pN:main.1,p:72010,tN:Thread-2] Loaded converter: CONVERTER_bz2_to_uncompressed galaxy.datatypes.registry DEBUG 2024-02-23 13:02:39,122 [pN:main.1,p:72010,tN:Thread-2] Loaded converter: CONVERTER_gff_to_bed_0 galaxy.datatypes.registry DEBUG 2024-02-23 13:02:39,122 [pN:main.1,p:72010,tN:Thread-2] Loaded converter: CONVERTER_gff_to_interval_index_0 galaxy.datatypes.registry DEBUG 2024-02-23 13:02:39,122 [pN:main.1,p:72010,tN:Thread-2] Loaded converter: CONVERTER_bed_gff_or_vcf_to_bigwig_0 galaxy.datatypes.registry DEBUG 2024-02-23 13:02:39,122 [pN:main.1,p:72010,tN:Thread-2] Loaded converter: CONVERTER_gff_to_fli_0 galaxy.datatypes.registry DEBUG 2024-02-23 13:02:39,123 [pN:main.1,p:72010,tN:Thread-2] Loaded converter: CONVERTER_interval_to_bgzip_0 galaxy.datatypes.registry DEBUG 2024-02-23 13:02:39,123 [pN:main.1,p:72010,tN:Thread-2] Loaded converter: CONVERTER_interval_to_tabix_0 galaxy.datatypes.registry DEBUG 2024-02-23 13:02:39,123 [pN:main.1,p:72010,tN:Thread-2] Loaded converter: CONVERTER_uncompressed_to_gz galaxy.datatypes.registry DEBUG 2024-02-23 13:02:39,123 [pN:main.1,p:72010,tN:Thread-2] Loaded converter: CONVERTER_gz_to_uncompressed galaxy.datatypes.registry DEBUG 2024-02-23 13:02:39,123 [pN:main.1,p:72010,tN:Thread-2] Loaded converter: CONVERTER_bz2_to_uncompressed galaxy.datatypes.registry DEBUG 2024-02-23 13:02:39,124 [pN:main.1,p:72010,tN:Thread-2] Loaded converter: CONVERTER_gff_to_interval_index_0 galaxy.datatypes.registry DEBUG 2024-02-23 13:02:39,124 [pN:main.1,p:72010,tN:Thread-2] Loaded converter: CONVERTER_bed_gff_or_vcf_to_bigwig_0 galaxy.datatypes.registry DEBUG 2024-02-23 13:02:39,124 [pN:main.1,p:72010,tN:Thread-2] Loaded converter: CONVERTER_interval_to_bed_0 galaxy.datatypes.registry DEBUG 2024-02-23 13:02:39,124 [pN:main.1,p:72010,tN:Thread-2] Loaded converter: CONVERTER_interval_to_bedstrict_0 galaxy.datatypes.registry DEBUG 2024-02-23 13:02:39,124 [pN:main.1,p:72010,tN:Thread-2] Loaded converter: CONVERTER_interval_to_bed6_0 galaxy.datatypes.registry DEBUG 2024-02-23 13:02:39,124 [pN:main.1,p:72010,tN:Thread-2] Loaded converter: CONVERTER_interval_to_bed12_0 galaxy.datatypes.registry DEBUG 2024-02-23 13:02:39,125 [pN:main.1,p:72010,tN:Thread-2] Loaded converter: CONVERTER_interval_to_bgzip_0 galaxy.datatypes.registry DEBUG 2024-02-23 13:02:39,125 [pN:main.1,p:72010,tN:Thread-2] Loaded converter: CONVERTER_interval_to_tabix_0 galaxy.datatypes.registry DEBUG 2024-02-23 13:02:39,125 [pN:main.1,p:72010,tN:Thread-2] Loaded converter: CONVERTER_interval_to_bigwig_0 galaxy.datatypes.registry DEBUG 2024-02-23 13:02:39,125 [pN:main.1,p:72010,tN:Thread-2] Loaded converter: CONVERTER_picard_interval_list_to_bed6 galaxy.datatypes.registry DEBUG 2024-02-23 13:02:39,125 [pN:main.1,p:72010,tN:Thread-2] Loaded converter: CONVERTER_tar_to_directory galaxy.datatypes.registry DEBUG 2024-02-23 13:02:39,126 [pN:main.1,p:72010,tN:Thread-2] Loaded converter: CONVERTER_uncompressed_to_gz galaxy.datatypes.registry DEBUG 2024-02-23 13:02:39,126 [pN:main.1,p:72010,tN:Thread-2] Loaded converter: CONVERTER_gz_to_uncompressed galaxy.datatypes.registry DEBUG 2024-02-23 13:02:39,126 [pN:main.1,p:72010,tN:Thread-2] Loaded converter: CONVERTER_uncompressed_to_gz galaxy.datatypes.registry DEBUG 2024-02-23 13:02:39,126 [pN:main.1,p:72010,tN:Thread-2] Loaded converter: CONVERTER_gz_to_uncompressed galaxy.datatypes.registry DEBUG 2024-02-23 13:02:39,127 [pN:main.1,p:72010,tN:Thread-2] Loaded converter: CONVERTER_uncompressed_to_gz galaxy.datatypes.registry DEBUG 2024-02-23 13:02:39,127 [pN:main.1,p:72010,tN:Thread-2] Loaded converter: CONVERTER_gz_to_uncompressed galaxy.datatypes.registry DEBUG 2024-02-23 13:02:39,127 [pN:main.1,p:72010,tN:Thread-2] Loaded converter: CONVERTER_maf_to_fasta_0 galaxy.datatypes.registry DEBUG 2024-02-23 13:02:39,127 [pN:main.1,p:72010,tN:Thread-2] Loaded converter: CONVERTER_maf_to_interval_0 galaxy.datatypes.registry DEBUG 2024-02-23 13:02:39,128 [pN:main.1,p:72010,tN:Thread-2] Loaded converter: CONVERTER_interval_to_tabix_0 galaxy.datatypes.registry DEBUG 2024-02-23 13:02:39,128 [pN:main.1,p:72010,tN:Thread-2] Loaded converter: CONVERTER_interval_to_bgzip_0 galaxy.datatypes.registry DEBUG 2024-02-23 13:02:39,128 [pN:main.1,p:72010,tN:Thread-2] Loaded converter: CONVERTER_bed_gff_or_vcf_to_bigwig_0 galaxy.datatypes.registry DEBUG 2024-02-23 13:02:39,128 [pN:main.1,p:72010,tN:Thread-2] Loaded converter: CONVERTER_interval_to_bgzip_0 galaxy.datatypes.registry DEBUG 2024-02-23 13:02:39,128 [pN:main.1,p:72010,tN:Thread-2] Loaded converter: CONVERTER_interval_to_tabix_0 galaxy.datatypes.registry DEBUG 2024-02-23 13:02:39,129 [pN:main.1,p:72010,tN:Thread-2] Loaded converter: CONVERTER_sam_to_unsorted_bam galaxy.datatypes.registry DEBUG 2024-02-23 13:02:39,129 [pN:main.1,p:72010,tN:Thread-2] Loaded converter: CONVERTER_bam_to_coodinate_sorted_bam galaxy.datatypes.registry DEBUG 2024-02-23 13:02:39,139 [pN:main.1,p:72010,tN:Thread-2] Loaded converter: CONVERTER_bam_to_qname_sorted_bam galaxy.datatypes.registry DEBUG 2024-02-23 13:02:39,139 [pN:main.1,p:72010,tN:Thread-2] Loaded converter: CONVERTER_sam_to_bigwig_0 galaxy.datatypes.registry DEBUG 2024-02-23 13:02:39,140 [pN:main.1,p:72010,tN:Thread-2] Loaded converter: tabular_to_dbnsfp galaxy.datatypes.registry DEBUG 2024-02-23 13:02:39,140 [pN:main.1,p:72010,tN:Thread-2] Loaded converter: tabular_to_csv galaxy.datatypes.registry DEBUG 2024-02-23 13:02:39,140 [pN:main.1,p:72010,tN:Thread-2] Loaded converter: CONVERTER_uncompressed_to_gz galaxy.datatypes.registry DEBUG 2024-02-23 13:02:39,141 [pN:main.1,p:72010,tN:Thread-2] Loaded converter: CONVERTER_gz_to_uncompressed galaxy.datatypes.registry DEBUG 2024-02-23 13:02:39,141 [pN:main.1,p:72010,tN:Thread-2] Loaded converter: CONVERTER_interval_to_bgzip_0 galaxy.datatypes.registry DEBUG 2024-02-23 13:02:39,141 [pN:main.1,p:72010,tN:Thread-2] Loaded converter: CONVERTER_vcf_to_vcf_bgzip_0 galaxy.datatypes.registry DEBUG 2024-02-23 13:02:39,151 [pN:main.1,p:72010,tN:Thread-2] Loaded converter: CONVERTER_interval_to_tabix_0 galaxy.datatypes.registry DEBUG 2024-02-23 13:02:39,151 [pN:main.1,p:72010,tN:Thread-2] Loaded converter: CONVERTER_bed_gff_or_vcf_to_bigwig_0 galaxy.datatypes.registry DEBUG 2024-02-23 13:02:39,151 [pN:main.1,p:72010,tN:Thread-2] Loaded converter: CONVERTER_uncompressed_to_gz galaxy.datatypes.registry DEBUG 2024-02-23 13:02:39,152 [pN:main.1,p:72010,tN:Thread-2] Loaded converter: CONVERTER_bcf_uncompressed_to_bcf galaxy.datatypes.registry DEBUG 2024-02-23 13:02:39,152 [pN:main.1,p:72010,tN:Thread-2] Loaded converter: CONVERTER_bcf_uncompressed_to_bcf galaxy.datatypes.registry DEBUG 2024-02-23 13:02:39,156 [pN:main.1,p:72010,tN:Thread-2] Loaded converter: CONVERTER_wig_to_bigwig galaxy.datatypes.registry DEBUG 2024-02-23 13:02:39,157 [pN:main.1,p:72010,tN:Thread-2] Loaded converter: CONVERTER_wiggle_to_interval_0 galaxy.datatypes.registry DEBUG 2024-02-23 13:02:39,157 [pN:main.1,p:72010,tN:Thread-2] Loaded converter: CONVERTER_vcf_bgzip_to_tabix_0 galaxy.datatypes.registry DEBUG 2024-02-23 13:02:39,157 [pN:main.1,p:72010,tN:Thread-2] Loaded converter: CONVERTER_gz_to_uncompressed galaxy.datatypes.registry DEBUG 2024-02-23 13:02:39,159 [pN:main.1,p:72010,tN:Thread-2] Loaded converter: lped2fpedconvert galaxy.datatypes.registry DEBUG 2024-02-23 13:02:39,159 [pN:main.1,p:72010,tN:Thread-2] Loaded converter: lped2pbedconvert galaxy.datatypes.registry DEBUG 2024-02-23 13:02:39,159 [pN:main.1,p:72010,tN:Thread-2] Loaded converter: pbed2lpedconvert galaxy.datatypes.registry DEBUG 2024-02-23 13:02:39,159 [pN:main.1,p:72010,tN:Thread-2] Loaded converter: pbed2ldindepconvert galaxy.datatypes.registry DEBUG 2024-02-23 13:02:39,159 [pN:main.1,p:72010,tN:Thread-2] Loaded converter: CONVERTER_uncompressed_to_gz galaxy.datatypes.registry DEBUG 2024-02-23 13:02:39,160 [pN:main.1,p:72010,tN:Thread-2] Loaded converter: CONVERTER_gz_to_uncompressed galaxy.datatypes.registry DEBUG 2024-02-23 13:02:39,160 [pN:main.1,p:72010,tN:Thread-2] Loaded converter: CONVERTER_biom galaxy.datatypes.registry DEBUG 2024-02-23 13:02:39,160 [pN:main.1,p:72010,tN:Thread-2] Loaded converter: CONVERTER_biom galaxy.datatypes.registry DEBUG 2024-02-23 13:02:39,160 [pN:main.1,p:72010,tN:Thread-2] Loaded converter: CONVERTER_molecules galaxy.datatypes.registry DEBUG 2024-02-23 13:02:39,160 [pN:main.1,p:72010,tN:Thread-2] Loaded converter: CONVERTER_molecules galaxy.datatypes.registry DEBUG 2024-02-23 13:02:39,160 [pN:main.1,p:72010,tN:Thread-2] Loaded converter: CONVERTER_molecules galaxy.datatypes.registry DEBUG 2024-02-23 13:02:39,161 [pN:main.1,p:72010,tN:Thread-2] Loaded converter: CONVERTER_SMILES_to_MOL galaxy.datatypes.registry DEBUG 2024-02-23 13:02:39,161 [pN:main.1,p:72010,tN:Thread-2] Loaded converter: CONVERTER_molecules galaxy.datatypes.registry DEBUG 2024-02-23 13:02:39,161 [pN:main.1,p:72010,tN:Thread-2] Loaded converter: CONVERTER_smiles_to_smiles galaxy.datatypes.registry DEBUG 2024-02-23 13:02:39,161 [pN:main.1,p:72010,tN:Thread-2] Loaded converter: CONVERTER_molecules galaxy.datatypes.registry DEBUG 2024-02-23 13:02:39,161 [pN:main.1,p:72010,tN:Thread-2] Loaded converter: CONVERTER_molecules galaxy.datatypes.registry DEBUG 2024-02-23 13:02:39,161 [pN:main.1,p:72010,tN:Thread-2] Loaded converter: CONVERTER_molecules galaxy.datatypes.registry DEBUG 2024-02-23 13:02:39,162 [pN:main.1,p:72010,tN:Thread-2] Loaded converter: CONVERTER_molecules galaxy.datatypes.registry DEBUG 2024-02-23 13:02:39,162 [pN:main.1,p:72010,tN:Thread-2] Loaded converter: CONVERTER_molecules galaxy.datatypes.registry DEBUG 2024-02-23 13:02:39,162 [pN:main.1,p:72010,tN:Thread-2] Loaded converter: CONVERTER_molecules galaxy.datatypes.registry DEBUG 2024-02-23 13:02:39,162 [pN:main.1,p:72010,tN:Thread-2] Loaded converter: CONVERTER_inchi_to_mol galaxy.model.database_heartbeat DEBUG 2024-02-23 13:02:39,162 [pN:main.1,p:72010,tN:database_heartbeart_main.1.thread] main.1 is config watcher galaxy.datatypes.registry DEBUG 2024-02-23 13:02:39,166 [pN:main.1,p:72010,tN:Thread-2] Loaded converter: CONVERTER_molecules galaxy.datatypes.registry DEBUG 2024-02-23 13:02:39,168 [pN:main.1,p:72010,tN:Thread-2] Loaded converter: CONVERTER_molecules galaxy.datatypes.registry DEBUG 2024-02-23 13:02:39,168 [pN:main.1,p:72010,tN:Thread-2] Loaded converter: CONVERTER_molecules galaxy.datatypes.registry DEBUG 2024-02-23 13:02:39,168 [pN:main.1,p:72010,tN:Thread-2] Loaded converter: CONVERTER_molecules galaxy.datatypes.registry DEBUG 2024-02-23 13:02:39,168 [pN:main.1,p:72010,tN:Thread-2] Loaded converter: CONVERTER_molecules galaxy.datatypes.registry DEBUG 2024-02-23 13:02:39,169 [pN:main.1,p:72010,tN:Thread-2] Loaded converter: CONVERTER_molecules galaxy.datatypes.registry DEBUG 2024-02-23 13:02:39,169 [pN:main.1,p:72010,tN:Thread-2] Loaded converter: CONVERTER_molecules galaxy.datatypes.registry DEBUG 2024-02-23 13:02:39,170 [pN:main.1,p:72010,tN:Thread-2] Loaded converter: CONVERTER_molecules galaxy.datatypes.registry DEBUG 2024-02-23 13:02:39,170 [pN:main.1,p:72010,tN:Thread-2] Loaded converter: CONVERTER_molecules galaxy.datatypes.registry DEBUG 2024-02-23 13:02:39,170 [pN:main.1,p:72010,tN:Thread-2] Loaded converter: CONVERTER_molecules galaxy.datatypes.registry DEBUG 2024-02-23 13:02:39,170 [pN:main.1,p:72010,tN:Thread-2] Loaded converter: CONVERTER_mol2_to_mol galaxy.datatypes.registry DEBUG 2024-02-23 13:02:39,170 [pN:main.1,p:72010,tN:Thread-2] Loaded converter: CONVERTER_molecules galaxy.datatypes.registry DEBUG 2024-02-23 13:02:39,170 [pN:main.1,p:72010,tN:Thread-2] Loaded converter: CONVERTER_cml_to_smiles galaxy.datatypes.registry DEBUG 2024-02-23 13:02:39,170 [pN:main.1,p:72010,tN:Thread-2] Loaded converter: CONVERTER_molecules galaxy.datatypes.registry DEBUG 2024-02-23 13:02:39,170 [pN:main.1,p:72010,tN:Thread-2] Loaded converter: CONVERTER_molecules galaxy.datatypes.registry DEBUG 2024-02-23 13:02:39,171 [pN:main.1,p:72010,tN:Thread-2] Loaded converter: CONVERTER_molecules galaxy.datatypes.registry DEBUG 2024-02-23 13:02:39,171 [pN:main.1,p:72010,tN:Thread-2] Loaded converter: CONVERTER_Pdb_to_Gro_0 galaxy.datatypes.registry DEBUG 2024-02-23 13:02:39,171 [pN:main.1,p:72010,tN:Thread-2] Loaded converter: CONVERTER_mdconvert galaxy.datatypes.registry DEBUG 2024-02-23 13:02:39,171 [pN:main.1,p:72010,tN:Thread-2] Loaded converter: CONVERTER_mdconvert galaxy.datatypes.registry DEBUG 2024-02-23 13:02:39,172 [pN:main.1,p:72010,tN:Thread-2] Loaded converter: CONVERTER_mdconvert galaxy.datatypes.registry DEBUG 2024-02-23 13:02:39,172 [pN:main.1,p:72010,tN:Thread-2] Loaded converter: CONVERTER_mdconvert galaxy.datatypes.registry DEBUG 2024-02-23 13:02:39,172 [pN:main.1,p:72010,tN:Thread-2] Loaded converter: CONVERTER_mdconvert galaxy.datatypes.registry DEBUG 2024-02-23 13:02:39,173 [pN:main.1,p:72010,tN:Thread-2] Loaded converter: CONVERTER_mdconvert galaxy.datatypes.registry DEBUG 2024-02-23 13:02:39,173 [pN:main.1,p:72010,tN:Thread-2] Loaded converter: CONVERTER_Gro_to_Pdb_0 galaxy.datatypes.registry DEBUG 2024-02-23 13:02:39,173 [pN:main.1,p:72010,tN:Thread-2] Loaded converter: CONVERTER_ref_to_seq_taxomony galaxy.datatypes.registry DEBUG 2024-02-23 13:02:39,174 [pN:main.1,p:72010,tN:Thread-2] Loaded converter: CONVERTER_neostorezip_to_neostore galaxy.datatypes.registry DEBUG 2024-02-23 13:02:39,178 [pN:main.1,p:72010,tN:Thread-2] Loaded external metadata tool: __SET_METADATA__ galaxy.tools.special_tools DEBUG 2024-02-23 13:02:39,180 [pN:main.1,p:72010,tN:Thread-2] Loaded history export tool: __EXPORT_HISTORY__ galaxy.tools.special_tools DEBUG 2024-02-23 13:02:39,182 [pN:main.1,p:72010,tN:Thread-2] Loaded history export to uri tool: __EXPORT_HISTORY_TO_URI__ galaxy.tools.special_tools DEBUG 2024-02-23 13:02:39,183 [pN:main.1,p:72010,tN:Thread-2] Loaded history import tool: __IMPORT_HISTORY__ galaxy.tools.special_tools DEBUG 2024-02-23 13:02:39,185 [pN:main.1,p:72010,tN:Thread-2] Loaded data fetch tool: __DATA_FETCH__ galaxy.queue_worker INFO 2024-02-23 13:02:39,185 [pN:main.1,p:72010,tN:Thread-2] Queuing async task rebuild_toolbox_search_index for main.1. galaxy.queue_worker DEBUG 2024-02-23 13:02:39,274 [pN:main.1,p:72010,tN:Thread-2] Toolbox reload (252.104 ms) galaxy.queue_worker INFO 2024-02-23 13:02:39,275 [pN:main.1,p:72010,tN:Thread-2] Queuing async task rebuild_toolbox_search_index for main.1. galaxy.web_stack INFO 2024-02-23 13:02:39,315 [pN:main.1,p:72010,tN:Thread-2] Galaxy server instance 'main.1' is running [92m Serving on http://127.0.0.1:44419 [0m multipart.multipart DEBUG 2024-02-23 13:02:39,921 [pN:main.1,p:72010,tN:MainThread] Calling on_field_start with no data multipart.multipart DEBUG 2024-02-23 13:02:39,922 [pN:main.1,p:72010,tN:MainThread] Calling on_field_name with data[0:4] multipart.multipart DEBUG 2024-02-23 13:02:39,922 [pN:main.1,p:72010,tN:MainThread] Calling on_field_data with data[5:63] multipart.multipart DEBUG 2024-02-23 13:02:39,922 [pN:main.1,p:72010,tN:MainThread] Calling on_field_end with no data multipart.multipart DEBUG 2024-02-23 13:02:39,922 [pN:main.1,p:72010,tN:MainThread] Calling on_end with no data galaxy.tools INFO 2024-02-23 13:02:40,095 [pN:main.1,p:72010,tN:WSGI_0] Validated and populated state for tool request (11.564 ms) galaxy.tools.actions.upload DEBUG 2024-02-23 13:02:40,101 [pN:main.1,p:72010,tN:WSGI_0] Persisted uploads (0.134 ms) galaxy.tools.actions.upload DEBUG 2024-02-23 13:02:40,161 [pN:main.1,p:72010,tN:WSGI_0] Checked uploads (59.407 ms) galaxy.tools.actions.upload DEBUG 2024-02-23 13:02:40,164 [pN:main.1,p:72010,tN:WSGI_0] Created upload job (2.738 ms) galaxy.tools.execute DEBUG 2024-02-23 13:02:40,164 [pN:main.1,p:72010,tN:WSGI_0] Tool upload1 created job None (62.872 ms) galaxy.web_stack.handlers INFO 2024-02-23 13:02:40,197 [pN:main.1,p:72010,tN:WSGI_0] (Job[id=1,tool_id=upload1]) Handler '_default_' assigned using 'HANDLER_ASSIGNMENT_METHODS.DB_SKIP_LOCKED' assignment method galaxy.tools.execute DEBUG 2024-02-23 13:02:40,204 [pN:main.1,p:72010,tN:WSGI_0] Created 1 job(s) for tool upload1 request (108.378 ms) galaxy.queue_worker INFO 2024-02-23 13:02:40,294 [pN:main.1,p:72010,tN:Thread-1] Instance 'main.1' received 'rebuild_toolbox_search_index' task, executing now. galaxy.tools.search DEBUG 2024-02-23 13:02:40,298 [pN:main.1,p:72010,tN:Thread-1] Starting to build toolbox index of panel default. galaxy.tools.search DEBUG 2024-02-23 13:02:40,333 [pN:main.1,p:72010,tN:Thread-1] Toolbox index of panel default finished (34.582 ms) galaxy.tools.search DEBUG 2024-02-23 13:02:40,333 [pN:main.1,p:72010,tN:Thread-1] Starting to build toolbox index of panel ontology:edam_operations. galaxy.tools.search DEBUG 2024-02-23 13:02:40,341 [pN:main.1,p:72010,tN:Thread-1] Toolbox index of panel ontology:edam_operations finished (7.979 ms) galaxy.tools.search DEBUG 2024-02-23 13:02:40,342 [pN:main.1,p:72010,tN:Thread-1] Starting to build toolbox index of panel ontology:edam_topics. galaxy.tools.search DEBUG 2024-02-23 13:02:40,345 [pN:main.1,p:72010,tN:Thread-1] Toolbox index of panel ontology:edam_topics finished (3.699 ms) galaxy.queue_worker INFO 2024-02-23 13:02:40,355 [pN:main.1,p:72010,tN:Thread-1] Instance 'main.1' received 'rebuild_toolbox_search_index' task, executing now. galaxy.tools.search DEBUG 2024-02-23 13:02:40,356 [pN:main.1,p:72010,tN:Thread-1] Starting to build toolbox index of panel default. galaxy.tools.search DEBUG 2024-02-23 13:02:40,359 [pN:main.1,p:72010,tN:Thread-1] Toolbox index of panel default finished (3.209 ms) galaxy.tools.search DEBUG 2024-02-23 13:02:40,359 [pN:main.1,p:72010,tN:Thread-1] Starting to build toolbox index of panel ontology:edam_operations. galaxy.tools.search DEBUG 2024-02-23 13:02:40,362 [pN:main.1,p:72010,tN:Thread-1] Toolbox index of panel ontology:edam_operations finished (3.098 ms) galaxy.tools.search DEBUG 2024-02-23 13:02:40,363 [pN:main.1,p:72010,tN:Thread-1] Starting to build toolbox index of panel ontology:edam_topics. galaxy.tools.search DEBUG 2024-02-23 13:02:40,366 [pN:main.1,p:72010,tN:Thread-1] Toolbox index of panel ontology:edam_topics finished (3.087 ms) galaxy.jobs.mapper DEBUG 2024-02-23 13:02:41,235 [pN:main.1,p:72010,tN:JobHandlerQueue.monitor_thread] (1) Mapped job to destination id: docker_local galaxy.jobs.handler DEBUG 2024-02-23 13:02:41,239 [pN:main.1,p:72010,tN:JobHandlerQueue.monitor_thread] (1) Dispatching to local runner galaxy.jobs DEBUG 2024-02-23 13:02:41,249 [pN:main.1,p:72010,tN:JobHandlerQueue.monitor_thread] (1) Persisting job destination (destination id: docker_local) galaxy.jobs DEBUG 2024-02-23 13:02:41,259 [pN:main.1,p:72010,tN:JobHandlerQueue.monitor_thread] (1) Working directory for job is: /tmp/tmpup6p245_/job_working_directory/000/1 galaxy.jobs.runners DEBUG 2024-02-23 13:02:41,266 [pN:main.1,p:72010,tN:JobHandlerQueue.monitor_thread] Job [1] queued (27.171 ms) galaxy.jobs.handler INFO 2024-02-23 13:02:41,282 [pN:main.1,p:72010,tN:JobHandlerQueue.monitor_thread] (1) Job dispatched galaxy.jobs DEBUG 2024-02-23 13:02:41,379 [pN:main.1,p:72010,tN:LocalRunner.work_thread-0] Job wrapper for Job [1] prepared (84.087 ms) galaxy.tool_util.deps.containers INFO 2024-02-23 13:02:41,379 [pN:main.1,p:72010,tN:LocalRunner.work_thread-0] Checking with container resolver [ExplicitContainerResolver[]] found description [None] galaxy.tool_util.deps.containers INFO 2024-02-23 13:02:41,379 [pN:main.1,p:72010,tN:LocalRunner.work_thread-0] Checking with container resolver [CachedMulledDockerContainerResolver[namespace=biocontainers]] found description [None] galaxy.tool_util.deps.containers INFO 2024-02-23 13:02:41,380 [pN:main.1,p:72010,tN:LocalRunner.work_thread-0] Checking with container resolver [CachedMulledDockerContainerResolver[namespace=local]] found description [None] galaxy.tool_util.deps.containers INFO 2024-02-23 13:02:41,380 [pN:main.1,p:72010,tN:LocalRunner.work_thread-0] Checking with container resolver [MulledDockerContainerResolver[namespace=biocontainers]] found description [None] galaxy.tool_util.deps.containers INFO 2024-02-23 13:02:41,380 [pN:main.1,p:72010,tN:LocalRunner.work_thread-0] Checking with container resolver [BuildDockerContainerResolver[namespace=local]] found description [None] galaxy.jobs.command_factory INFO 2024-02-23 13:02:41,408 [pN:main.1,p:72010,tN:LocalRunner.work_thread-0] Built script [/tmp/tmpup6p245_/job_working_directory/000/1/tool_script.sh] for tool command [python '/scratch/rico/galaxy/tools/data_source/upload.py' '/scratch/rico/galaxy' '/tmp/tmpup6p245_/job_working_directory/000/1/registry.xml' '/tmp/tmpup6p245_/job_working_directory/000/1/upload_params.json' '1:/tmp/tmpup6p245_/job_working_directory/000/1/outputs/dataset_07699200-428e-4ded-926c-67545fea490c_files:/tmp/tmpup6p245_/job_working_directory/000/1/outputs/dataset_07699200-428e-4ded-926c-67545fea490c.dat'] galaxy.jobs.runners DEBUG 2024-02-23 13:02:41,518 [pN:main.1,p:72010,tN:LocalRunner.work_thread-0] (1) command is: mkdir -p working outputs configs if [ -d _working ]; then rm -rf working/ outputs/ configs/; cp -R _working working; cp -R _outputs outputs; cp -R _configs configs else cp -R working _working; cp -R outputs _outputs; cp -R configs _configs fi cd working; /bin/bash /tmp/tmpup6p245_/job_working_directory/000/1/tool_script.sh > '../outputs/tool_stdout' 2> '../outputs/tool_stderr'; return_code=$?; echo $return_code > /tmp/tmpup6p245_/job_working_directory/000/1/galaxy_1.ec; cd '/tmp/tmpup6p245_/job_working_directory/000/1'; [ "$GALAXY_VIRTUAL_ENV" = "None" ] && GALAXY_VIRTUAL_ENV="$_GALAXY_VIRTUAL_ENV"; _galaxy_setup_environment True; python metadata/set.py; sh -c "exit $return_code" galaxy.jobs.runners.local DEBUG 2024-02-23 13:02:41,542 [pN:main.1,p:72010,tN:LocalRunner.work_thread-0] (1) executing job script: /tmp/tmpup6p245_/job_working_directory/000/1/galaxy_1.sh galaxy.jobs.runners.util.process_groups DEBUG 2024-02-23 13:02:47,710 [pN:main.1,p:72010,tN:LocalRunner.work_thread-0] check_pg(): No process found in process group 72032 galaxy.jobs.runners.local DEBUG 2024-02-23 13:02:47,711 [pN:main.1,p:72010,tN:LocalRunner.work_thread-0] execution finished: /tmp/tmpup6p245_/job_working_directory/000/1/galaxy_1.sh galaxy.jobs DEBUG 2024-02-23 13:02:47,736 [pN:main.1,p:72010,tN:LocalRunner.work_thread-0] finish(): Moved /tmp/tmpup6p245_/job_working_directory/000/1/outputs/dataset_07699200-428e-4ded-926c-67545fea490c.dat to /tmp/tmpup6p245_/files/0/7/6/dataset_07699200-428e-4ded-926c-67545fea490c.dat galaxy.model.metadata DEBUG 2024-02-23 13:02:47,746 [pN:main.1,p:72010,tN:LocalRunner.work_thread-0] loading metadata from file for: HistoryDatasetAssociation 1 galaxy.jobs DEBUG 2024-02-23 13:02:47,790 [pN:main.1,p:72010,tN:LocalRunner.work_thread-0] job_wrapper.finish for job 1 executed (60.825 ms) galaxy.tools INFO 2024-02-23 13:02:47,844 [pN:main.1,p:72010,tN:WSGI_2] Validated and populated state for tool request (11.670 ms) galaxy.tools.actions INFO 2024-02-23 13:02:47,850 [pN:main.1,p:72010,tN:WSGI_2] Handled output named adaptor_report for tool ncbi_fcs_adaptor (3.313 ms) galaxy.tools.actions INFO 2024-02-23 13:02:47,853 [pN:main.1,p:72010,tN:WSGI_2] Handled output named clean_fasta for tool ncbi_fcs_adaptor (2.419 ms) galaxy.tools.actions INFO 2024-02-23 13:02:47,860 [pN:main.1,p:72010,tN:WSGI_2] Added output datasets to history (7.127 ms) galaxy.tools.actions INFO 2024-02-23 13:02:47,862 [pN:main.1,p:72010,tN:WSGI_2] Setup for job Job[unflushed,tool_id=ncbi_fcs_adaptor] complete, ready to be enqueued (1.415 ms) galaxy.tools.execute DEBUG 2024-02-23 13:02:47,862 [pN:main.1,p:72010,tN:WSGI_2] Tool ncbi_fcs_adaptor created job None (16.232 ms) galaxy.web_stack.handlers INFO 2024-02-23 13:02:47,883 [pN:main.1,p:72010,tN:WSGI_2] (Job[id=2,tool_id=ncbi_fcs_adaptor]) Handler '_default_' assigned using 'HANDLER_ASSIGNMENT_METHODS.DB_SKIP_LOCKED' assignment method galaxy.tools.execute DEBUG 2024-02-23 13:02:47,887 [pN:main.1,p:72010,tN:WSGI_2] Created 1 job(s) for tool ncbi_fcs_adaptor request (43.024 ms) galaxy.jobs.mapper DEBUG 2024-02-23 13:02:48,469 [pN:main.1,p:72010,tN:JobHandlerQueue.monitor_thread] (2) Mapped job to destination id: docker_local galaxy.jobs.handler DEBUG 2024-02-23 13:02:48,472 [pN:main.1,p:72010,tN:JobHandlerQueue.monitor_thread] (2) Dispatching to local runner galaxy.jobs DEBUG 2024-02-23 13:02:48,484 [pN:main.1,p:72010,tN:JobHandlerQueue.monitor_thread] (2) Persisting job destination (destination id: docker_local) galaxy.jobs DEBUG 2024-02-23 13:02:48,493 [pN:main.1,p:72010,tN:JobHandlerQueue.monitor_thread] (2) Working directory for job is: /tmp/tmpup6p245_/job_working_directory/000/2 galaxy.jobs.runners DEBUG 2024-02-23 13:02:48,505 [pN:main.1,p:72010,tN:JobHandlerQueue.monitor_thread] Job [2] queued (32.742 ms) galaxy.jobs.handler INFO 2024-02-23 13:02:48,514 [pN:main.1,p:72010,tN:JobHandlerQueue.monitor_thread] (2) Job dispatched galaxy.security.object_wrapper WARNING 2024-02-23 13:02:48,562 [pN:main.1,p:72010,tN:LocalRunner.work_thread-0] Unable to create dynamic subclass SafeStringWrapper__galaxy.model.none_like.None__NoneType__NotImplementedType__Number__SafeStringWrapper__ToolParameterValueWrapper__bool__bytearray__ellipsis for <class 'galaxy.model.none_like.NoneDataset'>, None: type() doesn't support MRO entry resolution; use types.new_class() galaxy.jobs DEBUG 2024-02-23 13:02:48,574 [pN:main.1,p:72010,tN:LocalRunner.work_thread-0] Job wrapper for Job [2] prepared (49.101 ms) galaxy.tool_util.deps.containers INFO 2024-02-23 13:02:48,575 [pN:main.1,p:72010,tN:LocalRunner.work_thread-0] Checking with container resolver [ExplicitContainerResolver[]] found description [ContainerDescription[identifier=ncbi/fcs-adaptor:0.5.0,type=docker]] galaxy.jobs.command_factory INFO 2024-02-23 13:02:48,610 [pN:main.1,p:72010,tN:LocalRunner.work_thread-0] Built script [/tmp/tmpup6p245_/job_working_directory/000/2/tool_script.sh] for tool command [/app/fcs/bin/av_screen_x -o "$(pwd)" '--prok' '/tmp/tmpup6p245_/files/0/7/6/dataset_07699200-428e-4ded-926c-67545fea490c.dat'] galaxy.jobs.runners DEBUG 2024-02-23 13:02:48,646 [pN:main.1,p:72010,tN:LocalRunner.work_thread-0] (2) command is: mkdir -p working outputs configs if [ -d _working ]; then rm -rf working/ outputs/ configs/; cp -R _working working; cp -R _outputs outputs; cp -R _configs configs else cp -R working _working; cp -R outputs _outputs; cp -R configs _configs fi cd working; _on_exit() { docker kill 5a86b379e7394f348c6813a509d68a59 &> /dev/null } trap _on_exit EXIT docker inspect ncbi/fcs-adaptor:0.5.0 > /dev/null 2>&1 [ $? -ne 0 ] && docker pull ncbi/fcs-adaptor:0.5.0 > /dev/null 2>&1 docker run -e "GALAXY_SLOTS=$GALAXY_SLOTS" -e "GALAXY_MEMORY_MB=$GALAXY_MEMORY_MB" -e "GALAXY_MEMORY_MB_PER_SLOT=$GALAXY_MEMORY_MB_PER_SLOT" -e "HOME=$HOME" -e "_GALAXY_JOB_HOME_DIR=$_GALAXY_JOB_HOME_DIR" -e "_GALAXY_JOB_TMP_DIR=$_GALAXY_JOB_TMP_DIR" -e "TMPDIR=$TMPDIR" -e "TMP=$TMP" -e "TEMP=$TEMP" --name 5a86b379e7394f348c6813a509d68a59 -v "$_GALAXY_JOB_TMP_DIR:$_GALAXY_JOB_TMP_DIR:rw" -v "$TMPDIR:$TMPDIR:rw" -v "$TMP:$TMP:rw" -v "$TEMP:$TEMP:rw" -v /scratch/rico/galaxy:/scratch/rico/galaxy:ro -v /scratch/rico/galaxytools/tools/ncbi_fcs_adaptor:/scratch/rico/galaxytools/tools/ncbi_fcs_adaptor:ro -v /tmp/tmpup6p245_/job_working_directory/000/2:/tmp/tmpup6p245_/job_working_directory/000/2:ro -v /tmp/tmpup6p245_/job_working_directory/000/2/outputs:/tmp/tmpup6p245_/job_working_directory/000/2/outputs:rw -v "$_GALAXY_JOB_HOME_DIR:$_GALAXY_JOB_HOME_DIR:rw" -v /tmp/tmpup6p245_/job_working_directory/000/2/working:/tmp/tmpup6p245_/job_working_directory/000/2/working:rw -v /tmp/tmpup6p245_/files:/tmp/tmpup6p245_/files:ro -v /scratch/rico/galaxy/tool-data:/scratch/rico/galaxy/tool-data:ro --cpus ${GALAXY_SLOTS:-1} -w /tmp/tmpup6p245_/job_working_directory/000/2/working --rm --user 1028:1028 ncbi/fcs-adaptor:0.5.0 /bin/sh /tmp/tmpup6p245_/job_working_directory/000/2/tool_script.sh > '../outputs/tool_stdout' 2> '../outputs/tool_stderr'; return_code=$?; echo $return_code > /tmp/tmpup6p245_/job_working_directory/000/2/galaxy_2.ec; if [ -f "/tmp/tmpup6p245_/job_working_directory/000/2/working/fcs_adaptor_report.txt" ] ; then cp "/tmp/tmpup6p245_/job_working_directory/000/2/working/fcs_adaptor_report.txt" "/tmp/tmpup6p245_/job_working_directory/000/2/outputs/dataset_55ebf7e9-ff3b-40a8-861e-ceb1a369b921.dat" ; fi; if [ -f "/tmp/tmpup6p245_/job_working_directory/000/2/working/cleaned_sequences/"*".dat" ] ; then cp "/tmp/tmpup6p245_/job_working_directory/000/2/working/cleaned_sequences/"*".dat" "/tmp/tmpup6p245_/job_working_directory/000/2/outputs/dataset_5d9dd309-0ac0-4552-b677-da14173abff1.dat" ; fi; cd '/tmp/tmpup6p245_/job_working_directory/000/2'; [ "$GALAXY_VIRTUAL_ENV" = "None" ] && GALAXY_VIRTUAL_ENV="$_GALAXY_VIRTUAL_ENV"; _galaxy_setup_environment True; python metadata/set.py; sh -c "exit $return_code" galaxy.jobs.runners.local DEBUG 2024-02-23 13:02:48,667 [pN:main.1,p:72010,tN:LocalRunner.work_thread-0] (2) executing job script: /tmp/tmpup6p245_/job_working_directory/000/2/galaxy_2.sh galaxy.jobs.runners.util.process_groups DEBUG 2024-02-23 13:03:41,023 [pN:main.1,p:72010,tN:LocalRunner.work_thread-0] check_pg(): No process found in process group 72188 galaxy.jobs.runners.local DEBUG 2024-02-23 13:03:41,024 [pN:main.1,p:72010,tN:LocalRunner.work_thread-0] execution finished: /tmp/tmpup6p245_/job_working_directory/000/2/galaxy_2.sh galaxy.jobs DEBUG 2024-02-23 13:03:41,042 [pN:main.1,p:72010,tN:LocalRunner.work_thread-0] finish(): Moved /tmp/tmpup6p245_/job_working_directory/000/2/outputs/dataset_55ebf7e9-ff3b-40a8-861e-ceb1a369b921.dat to /tmp/tmpup6p245_/files/5/5/e/dataset_55ebf7e9-ff3b-40a8-861e-ceb1a369b921.dat galaxy.jobs DEBUG 2024-02-23 13:03:41,042 [pN:main.1,p:72010,tN:LocalRunner.work_thread-0] finish(): Moved /tmp/tmpup6p245_/job_working_directory/000/2/outputs/dataset_5d9dd309-0ac0-4552-b677-da14173abff1.dat to /tmp/tmpup6p245_/files/5/d/9/dataset_5d9dd309-0ac0-4552-b677-da14173abff1.dat galaxy.model.metadata DEBUG 2024-02-23 13:03:41,052 [pN:main.1,p:72010,tN:LocalRunner.work_thread-0] loading metadata from file for: HistoryDatasetAssociation 2 galaxy.model.metadata DEBUG 2024-02-23 13:03:41,058 [pN:main.1,p:72010,tN:LocalRunner.work_thread-0] loading metadata from file for: HistoryDatasetAssociation 3 galaxy.jobs DEBUG 2024-02-23 13:03:41,089 [pN:main.1,p:72010,tN:LocalRunner.work_thread-0] job_wrapper.finish for job 2 executed (52.869 ms) multipart.multipart DEBUG 2024-02-23 13:03:41,826 [pN:main.1,p:72010,tN:MainThread] Calling on_field_start with no data multipart.multipart DEBUG 2024-02-23 13:03:41,826 [pN:main.1,p:72010,tN:MainThread] Calling on_field_name with data[0:4] multipart.multipart DEBUG 2024-02-23 13:03:41,826 [pN:main.1,p:72010,tN:MainThread] Calling on_field_data with data[5:63] multipart.multipart DEBUG 2024-02-23 13:03:41,826 [pN:main.1,p:72010,tN:MainThread] Calling on_field_end with no data multipart.multipart DEBUG 2024-02-23 13:03:41,827 [pN:main.1,p:72010,tN:MainThread] Calling on_end with no data galaxy.tools INFO 2024-02-23 13:03:41,973 [pN:main.1,p:72010,tN:WSGI_8] Validated and populated state for tool request (7.424 ms) galaxy.tools.actions.upload DEBUG 2024-02-23 13:03:41,976 [pN:main.1,p:72010,tN:WSGI_8] Persisted uploads (0.117 ms) galaxy.tools.actions.upload DEBUG 2024-02-23 13:03:42,018 [pN:main.1,p:72010,tN:WSGI_8] Checked uploads (41.453 ms) galaxy.tools.actions.upload DEBUG 2024-02-23 13:03:42,020 [pN:main.1,p:72010,tN:WSGI_8] Created upload job (2.171 ms) galaxy.tools.execute DEBUG 2024-02-23 13:03:42,020 [pN:main.1,p:72010,tN:WSGI_8] Tool upload1 created job None (44.281 ms) galaxy.web_stack.handlers INFO 2024-02-23 13:03:42,034 [pN:main.1,p:72010,tN:WSGI_8] (Job[id=3,tool_id=upload1]) Handler '_default_' assigned using 'HANDLER_ASSIGNMENT_METHODS.DB_SKIP_LOCKED' assignment method galaxy.tools.execute DEBUG 2024-02-23 13:03:42,038 [pN:main.1,p:72010,tN:WSGI_8] Created 1 job(s) for tool upload1 request (64.271 ms) galaxy.jobs.mapper DEBUG 2024-02-23 13:03:42,755 [pN:main.1,p:72010,tN:JobHandlerQueue.monitor_thread] (3) Mapped job to destination id: docker_local galaxy.jobs.handler DEBUG 2024-02-23 13:03:42,758 [pN:main.1,p:72010,tN:JobHandlerQueue.monitor_thread] (3) Dispatching to local runner galaxy.jobs DEBUG 2024-02-23 13:03:42,764 [pN:main.1,p:72010,tN:JobHandlerQueue.monitor_thread] (3) Persisting job destination (destination id: docker_local) galaxy.jobs DEBUG 2024-02-23 13:03:42,769 [pN:main.1,p:72010,tN:JobHandlerQueue.monitor_thread] (3) Working directory for job is: /tmp/tmpup6p245_/job_working_directory/000/3 galaxy.jobs.runners DEBUG 2024-02-23 13:03:42,774 [pN:main.1,p:72010,tN:JobHandlerQueue.monitor_thread] Job [3] queued (15.913 ms) galaxy.jobs.handler INFO 2024-02-23 13:03:42,786 [pN:main.1,p:72010,tN:JobHandlerQueue.monitor_thread] (3) Job dispatched galaxy.jobs DEBUG 2024-02-23 13:03:42,830 [pN:main.1,p:72010,tN:LocalRunner.work_thread-1] Job wrapper for Job [3] prepared (37.010 ms) galaxy.tool_util.deps.containers INFO 2024-02-23 13:03:42,830 [pN:main.1,p:72010,tN:LocalRunner.work_thread-1] Checking with container resolver [ExplicitContainerResolver[]] found description [None] galaxy.tool_util.deps.containers INFO 2024-02-23 13:03:42,830 [pN:main.1,p:72010,tN:LocalRunner.work_thread-1] Checking with container resolver [CachedMulledDockerContainerResolver[namespace=biocontainers]] found description [None] galaxy.tool_util.deps.containers INFO 2024-02-23 13:03:42,831 [pN:main.1,p:72010,tN:LocalRunner.work_thread-1] Checking with container resolver [CachedMulledDockerContainerResolver[namespace=local]] found description [None] galaxy.tool_util.deps.containers INFO 2024-02-23 13:03:42,831 [pN:main.1,p:72010,tN:LocalRunner.work_thread-1] Checking with container resolver [MulledDockerContainerResolver[namespace=biocontainers]] found description [None] galaxy.tool_util.deps.containers INFO 2024-02-23 13:03:42,831 [pN:main.1,p:72010,tN:LocalRunner.work_thread-1] Checking with container resolver [BuildDockerContainerResolver[namespace=local]] found description [None] galaxy.jobs.command_factory INFO 2024-02-23 13:03:42,859 [pN:main.1,p:72010,tN:LocalRunner.work_thread-1] Built script [/tmp/tmpup6p245_/job_working_directory/000/3/tool_script.sh] for tool command [python '/scratch/rico/galaxy/tools/data_source/upload.py' '/scratch/rico/galaxy' '/tmp/tmpup6p245_/job_working_directory/000/3/registry.xml' '/tmp/tmpup6p245_/job_working_directory/000/3/upload_params.json' '4:/tmp/tmpup6p245_/job_working_directory/000/3/outputs/dataset_2c05641f-5c61-46a5-8e66-5f9b25f3452a_files:/tmp/tmpup6p245_/job_working_directory/000/3/outputs/dataset_2c05641f-5c61-46a5-8e66-5f9b25f3452a.dat'] galaxy.jobs.runners DEBUG 2024-02-23 13:03:42,886 [pN:main.1,p:72010,tN:LocalRunner.work_thread-1] (3) command is: mkdir -p working outputs configs if [ -d _working ]; then rm -rf working/ outputs/ configs/; cp -R _working working; cp -R _outputs outputs; cp -R _configs configs else cp -R working _working; cp -R outputs _outputs; cp -R configs _configs fi cd working; /bin/bash /tmp/tmpup6p245_/job_working_directory/000/3/tool_script.sh > '../outputs/tool_stdout' 2> '../outputs/tool_stderr'; return_code=$?; echo $return_code > /tmp/tmpup6p245_/job_working_directory/000/3/galaxy_3.ec; cd '/tmp/tmpup6p245_/job_working_directory/000/3'; [ "$GALAXY_VIRTUAL_ENV" = "None" ] && GALAXY_VIRTUAL_ENV="$_GALAXY_VIRTUAL_ENV"; _galaxy_setup_environment True; python metadata/set.py; sh -c "exit $return_code" galaxy.jobs.runners.local DEBUG 2024-02-23 13:03:42,908 [pN:main.1,p:72010,tN:LocalRunner.work_thread-1] (3) executing job script: /tmp/tmpup6p245_/job_working_directory/000/3/galaxy_3.sh galaxy.jobs.runners.util.process_groups DEBUG 2024-02-23 13:03:49,029 [pN:main.1,p:72010,tN:LocalRunner.work_thread-1] check_pg(): No process found in process group 72508 galaxy.jobs.runners.local DEBUG 2024-02-23 13:03:49,030 [pN:main.1,p:72010,tN:LocalRunner.work_thread-1] execution finished: /tmp/tmpup6p245_/job_working_directory/000/3/galaxy_3.sh galaxy.jobs DEBUG 2024-02-23 13:03:49,055 [pN:main.1,p:72010,tN:LocalRunner.work_thread-1] finish(): Moved /tmp/tmpup6p245_/job_working_directory/000/3/outputs/dataset_2c05641f-5c61-46a5-8e66-5f9b25f3452a.dat to /tmp/tmpup6p245_/files/2/c/0/dataset_2c05641f-5c61-46a5-8e66-5f9b25f3452a.dat galaxy.model.metadata DEBUG 2024-02-23 13:03:49,063 [pN:main.1,p:72010,tN:LocalRunner.work_thread-1] loading metadata from file for: HistoryDatasetAssociation 4 galaxy.jobs DEBUG 2024-02-23 13:03:49,101 [pN:main.1,p:72010,tN:LocalRunner.work_thread-1] job_wrapper.finish for job 3 executed (52.852 ms) galaxy.tools INFO 2024-02-23 13:03:49,254 [pN:main.1,p:72010,tN:WSGI_0] Validated and populated state for tool request (4.457 ms) galaxy.tools.actions INFO 2024-02-23 13:03:49,258 [pN:main.1,p:72010,tN:WSGI_0] Handled output named adaptor_report for tool ncbi_fcs_adaptor (1.020 ms) galaxy.tools.actions INFO 2024-02-23 13:03:49,259 [pN:main.1,p:72010,tN:WSGI_0] Handled output named clean_fasta for tool ncbi_fcs_adaptor (0.691 ms) galaxy.tools.actions DEBUG 2024-02-23 13:03:49,259 [pN:main.1,p:72010,tN:WSGI_0] Tool ncbi_fcs_adaptor output adaptor_log: dataset output filter (advanced['optional_log'] is not None and 'adaptor_log' in advanced['optional_log'].split(',')) failed: 'list' object has no attribute 'split' galaxy.tools.actions INFO 2024-02-23 13:03:49,262 [pN:main.1,p:72010,tN:WSGI_0] Handled output named adaptor_log for tool ncbi_fcs_adaptor (2.792 ms) galaxy.tools.actions DEBUG 2024-02-23 13:03:49,262 [pN:main.1,p:72010,tN:WSGI_0] Tool ncbi_fcs_adaptor output validate_fasta_log: dataset output filter (advanced['optional_log'] is not None and 'validate_fasta_log' in advanced['optional_log'].split(',')) failed: 'list' object has no attribute 'split' galaxy.tools.actions INFO 2024-02-23 13:03:49,265 [pN:main.1,p:72010,tN:WSGI_0] Handled output named validate_fasta_log for tool ncbi_fcs_adaptor (2.342 ms) galaxy.tools.actions INFO 2024-02-23 13:03:49,272 [pN:main.1,p:72010,tN:WSGI_0] Added output datasets to history (7.334 ms) galaxy.tools.actions INFO 2024-02-23 13:03:49,274 [pN:main.1,p:72010,tN:WSGI_0] Setup for job Job[unflushed,tool_id=ncbi_fcs_adaptor] complete, ready to be enqueued (1.971 ms) galaxy.tools.execute DEBUG 2024-02-23 13:03:49,274 [pN:main.1,p:72010,tN:WSGI_0] Tool ncbi_fcs_adaptor created job None (18.524 ms) galaxy.web_stack.handlers INFO 2024-02-23 13:03:49,294 [pN:main.1,p:72010,tN:WSGI_0] (Job[id=4,tool_id=ncbi_fcs_adaptor]) Handler '_default_' assigned using 'HANDLER_ASSIGNMENT_METHODS.DB_SKIP_LOCKED' assignment method galaxy.tools.execute DEBUG 2024-02-23 13:03:49,298 [pN:main.1,p:72010,tN:WSGI_0] Created 1 job(s) for tool ncbi_fcs_adaptor request (43.810 ms) galaxy.jobs.mapper DEBUG 2024-02-23 13:03:49,957 [pN:main.1,p:72010,tN:JobHandlerQueue.monitor_thread] (4) Mapped job to destination id: docker_local galaxy.jobs.handler DEBUG 2024-02-23 13:03:49,959 [pN:main.1,p:72010,tN:JobHandlerQueue.monitor_thread] (4) Dispatching to local runner galaxy.jobs DEBUG 2024-02-23 13:03:49,965 [pN:main.1,p:72010,tN:JobHandlerQueue.monitor_thread] (4) Persisting job destination (destination id: docker_local) galaxy.jobs DEBUG 2024-02-23 13:03:49,970 [pN:main.1,p:72010,tN:JobHandlerQueue.monitor_thread] (4) Working directory for job is: /tmp/tmpup6p245_/job_working_directory/000/4 galaxy.jobs.runners DEBUG 2024-02-23 13:03:49,976 [pN:main.1,p:72010,tN:JobHandlerQueue.monitor_thread] Job [4] queued (16.158 ms) galaxy.jobs.handler INFO 2024-02-23 13:03:49,984 [pN:main.1,p:72010,tN:JobHandlerQueue.monitor_thread] (4) Job dispatched galaxy.jobs DEBUG 2024-02-23 13:03:50,035 [pN:main.1,p:72010,tN:LocalRunner.work_thread-2] Job wrapper for Job [4] prepared (39.235 ms) galaxy.tool_util.deps.containers INFO 2024-02-23 13:03:50,036 [pN:main.1,p:72010,tN:LocalRunner.work_thread-2] Checking with container resolver [ExplicitContainerResolver[]] found description [ContainerDescription[identifier=ncbi/fcs-adaptor:0.5.0,type=docker]] galaxy.jobs.command_factory INFO 2024-02-23 13:03:50,070 [pN:main.1,p:72010,tN:LocalRunner.work_thread-2] Built script [/tmp/tmpup6p245_/job_working_directory/000/4/tool_script.sh] for tool command [/app/fcs/bin/av_screen_x -o "$(pwd)" '--prok' '/tmp/tmpup6p245_/files/2/c/0/dataset_2c05641f-5c61-46a5-8e66-5f9b25f3452a.dat'] galaxy.jobs.runners DEBUG 2024-02-23 13:03:50,118 [pN:main.1,p:72010,tN:LocalRunner.work_thread-2] (4) command is: mkdir -p working outputs configs if [ -d _working ]; then rm -rf working/ outputs/ configs/; cp -R _working working; cp -R _outputs outputs; cp -R _configs configs else cp -R working _working; cp -R outputs _outputs; cp -R configs _configs fi cd working; _on_exit() { docker kill c7f622aecef84f5faefa133d5b287870 &> /dev/null } trap _on_exit EXIT docker inspect ncbi/fcs-adaptor:0.5.0 > /dev/null 2>&1 [ $? -ne 0 ] && docker pull ncbi/fcs-adaptor:0.5.0 > /dev/null 2>&1 docker run -e "GALAXY_SLOTS=$GALAXY_SLOTS" -e "GALAXY_MEMORY_MB=$GALAXY_MEMORY_MB" -e "GALAXY_MEMORY_MB_PER_SLOT=$GALAXY_MEMORY_MB_PER_SLOT" -e "HOME=$HOME" -e "_GALAXY_JOB_HOME_DIR=$_GALAXY_JOB_HOME_DIR" -e "_GALAXY_JOB_TMP_DIR=$_GALAXY_JOB_TMP_DIR" -e "TMPDIR=$TMPDIR" -e "TMP=$TMP" -e "TEMP=$TEMP" --name c7f622aecef84f5faefa133d5b287870 -v "$_GALAXY_JOB_TMP_DIR:$_GALAXY_JOB_TMP_DIR:rw" -v "$TMPDIR:$TMPDIR:rw" -v "$TMP:$TMP:rw" -v "$TEMP:$TEMP:rw" -v /scratch/rico/galaxy:/scratch/rico/galaxy:ro -v /scratch/rico/galaxytools/tools/ncbi_fcs_adaptor:/scratch/rico/galaxytools/tools/ncbi_fcs_adaptor:ro -v /tmp/tmpup6p245_/job_working_directory/000/4:/tmp/tmpup6p245_/job_working_directory/000/4:ro -v /tmp/tmpup6p245_/job_working_directory/000/4/outputs:/tmp/tmpup6p245_/job_working_directory/000/4/outputs:rw -v "$_GALAXY_JOB_HOME_DIR:$_GALAXY_JOB_HOME_DIR:rw" -v /tmp/tmpup6p245_/job_working_directory/000/4/working:/tmp/tmpup6p245_/job_working_directory/000/4/working:rw -v /tmp/tmpup6p245_/files:/tmp/tmpup6p245_/files:ro -v /scratch/rico/galaxy/tool-data:/scratch/rico/galaxy/tool-data:ro --cpus ${GALAXY_SLOTS:-1} -w /tmp/tmpup6p245_/job_working_directory/000/4/working --rm --user 1028:1028 ncbi/fcs-adaptor:0.5.0 /bin/sh /tmp/tmpup6p245_/job_working_directory/000/4/tool_script.sh > '../outputs/tool_stdout' 2> '../outputs/tool_stderr'; return_code=$?; echo $return_code > /tmp/tmpup6p245_/job_working_directory/000/4/galaxy_4.ec; if [ -f "/tmp/tmpup6p245_/job_working_directory/000/4/working/fcs_adaptor_report.txt" ] ; then cp "/tmp/tmpup6p245_/job_working_directory/000/4/working/fcs_adaptor_report.txt" "/tmp/tmpup6p245_/job_working_directory/000/4/outputs/dataset_954566da-5144-4a2d-b9d4-c957cb4686d9.dat" ; fi; if [ -f "/tmp/tmpup6p245_/job_working_directory/000/4/working/cleaned_sequences/"*".dat" ] ; then cp "/tmp/tmpup6p245_/job_working_directory/000/4/working/cleaned_sequences/"*".dat" "/tmp/tmpup6p245_/job_working_directory/000/4/outputs/dataset_020eb0e5-c681-4d2d-80dc-b74084cf4900.dat" ; fi; if [ -f "/tmp/tmpup6p245_/job_working_directory/000/4/working/fcs_adaptor.log" ] ; then cp "/tmp/tmpup6p245_/job_working_directory/000/4/working/fcs_adaptor.log" "/tmp/tmpup6p245_/job_working_directory/000/4/outputs/dataset_ab688873-96b9-46c9-b64c-7aff13729101.dat" ; fi; if [ -f "/tmp/tmpup6p245_/job_working_directory/000/4/working/validate_fasta.txt" ] ; then cp "/tmp/tmpup6p245_/job_working_directory/000/4/working/validate_fasta.txt" "/tmp/tmpup6p245_/job_working_directory/000/4/outputs/dataset_5dbe8767-7e2c-44ab-8782-8cccd98a9dea.dat" ; fi; cd '/tmp/tmpup6p245_/job_working_directory/000/4'; [ "$GALAXY_VIRTUAL_ENV" = "None" ] && GALAXY_VIRTUAL_ENV="$_GALAXY_VIRTUAL_ENV"; _galaxy_setup_environment True; python metadata/set.py; sh -c "exit $return_code" galaxy.jobs.runners.local DEBUG 2024-02-23 13:03:50,143 [pN:main.1,p:72010,tN:LocalRunner.work_thread-2] (4) executing job script: /tmp/tmpup6p245_/job_working_directory/000/4/galaxy_4.sh galaxy.jobs.runners.util.process_groups DEBUG 2024-02-23 13:04:39,243 [pN:main.1,p:72010,tN:LocalRunner.work_thread-2] check_pg(): No process found in process group 72664 galaxy.jobs.runners.local DEBUG 2024-02-23 13:04:39,244 [pN:main.1,p:72010,tN:LocalRunner.work_thread-2] execution finished: /tmp/tmpup6p245_/job_working_directory/000/4/galaxy_4.sh galaxy.jobs DEBUG 2024-02-23 13:04:39,271 [pN:main.1,p:72010,tN:LocalRunner.work_thread-2] finish(): Moved /tmp/tmpup6p245_/job_working_directory/000/4/outputs/dataset_954566da-5144-4a2d-b9d4-c957cb4686d9.dat to /tmp/tmpup6p245_/files/9/5/4/dataset_954566da-5144-4a2d-b9d4-c957cb4686d9.dat galaxy.jobs DEBUG 2024-02-23 13:04:39,271 [pN:main.1,p:72010,tN:LocalRunner.work_thread-2] finish(): Moved /tmp/tmpup6p245_/job_working_directory/000/4/outputs/dataset_020eb0e5-c681-4d2d-80dc-b74084cf4900.dat to /tmp/tmpup6p245_/files/0/2/0/dataset_020eb0e5-c681-4d2d-80dc-b74084cf4900.dat galaxy.jobs DEBUG 2024-02-23 13:04:39,271 [pN:main.1,p:72010,tN:LocalRunner.work_thread-2] finish(): Moved /tmp/tmpup6p245_/job_working_directory/000/4/outputs/dataset_ab688873-96b9-46c9-b64c-7aff13729101.dat to /tmp/tmpup6p245_/files/a/b/6/dataset_ab688873-96b9-46c9-b64c-7aff13729101.dat galaxy.jobs DEBUG 2024-02-23 13:04:39,271 [pN:main.1,p:72010,tN:LocalRunner.work_thread-2] finish(): Moved /tmp/tmpup6p245_/job_working_directory/000/4/outputs/dataset_5dbe8767-7e2c-44ab-8782-8cccd98a9dea.dat to /tmp/tmpup6p245_/files/5/d/b/dataset_5dbe8767-7e2c-44ab-8782-8cccd98a9dea.dat galaxy.model.metadata DEBUG 2024-02-23 13:04:39,281 [pN:main.1,p:72010,tN:LocalRunner.work_thread-2] loading metadata from file for: HistoryDatasetAssociation 5 galaxy.model.metadata DEBUG 2024-02-23 13:04:39,285 [pN:main.1,p:72010,tN:LocalRunner.work_thread-2] loading metadata from file for: HistoryDatasetAssociation 6 galaxy.model.metadata DEBUG 2024-02-23 13:04:39,287 [pN:main.1,p:72010,tN:LocalRunner.work_thread-2] loading metadata from file for: HistoryDatasetAssociation 7 galaxy.model.metadata DEBUG 2024-02-23 13:04:39,310 [pN:main.1,p:72010,tN:LocalRunner.work_thread-2] loading metadata from file for: HistoryDatasetAssociation 8 galaxy.jobs DEBUG 2024-02-23 13:04:39,372 [pN:main.1,p:72010,tN:LocalRunner.work_thread-2] job_wrapper.finish for job 4 executed (106.835 ms) galaxy.queue_worker INFO 2024-02-23 13:04:41,328 [pN:main.1,p:72010,tN:MainThread] Sending reconfigure_watcher control task. galaxy.util.monitors DEBUG 2024-02-23 13:04:41,343 [pN:main.1,p:72010,tN:MainThread] Joining monitor thread galaxy.jobs.handler INFO 2024-02-23 13:04:41,343 [pN:main.1,p:72010,tN:MainThread] sending stop signal to worker thread galaxy.util.monitors DEBUG 2024-02-23 13:04:41,343 [pN:main.1,p:72010,tN:MainThread] Joining monitor thread galaxy.jobs.handler INFO 2024-02-23 13:04:41,343 [pN:main.1,p:72010,tN:MainThread] job handler queue stopped galaxy.jobs.runners INFO 2024-02-23 13:04:41,344 [pN:main.1,p:72010,tN:MainThread] LocalRunner: Sending stop signal to 4 job worker threads galaxy.jobs.runners INFO 2024-02-23 13:04:41,344 [pN:main.1,p:72010,tN:MainThread] Waiting up to 30 seconds for job worker threads to shutdown... galaxy.jobs.runners DEBUG 2024-02-23 13:04:41,346 [pN:main.1,p:72010,tN:MainThread] Job worker thread terminated: LocalRunner.work_thread-0 galaxy.jobs.runners INFO 2024-02-23 13:04:41,346 [pN:main.1,p:72010,tN:MainThread] All job worker threads shutdown cleanly galaxy.jobs.handler INFO 2024-02-23 13:04:41,346 [pN:main.1,p:72010,tN:MainThread] sending stop signal to worker thread galaxy.util.monitors DEBUG 2024-02-23 13:04:41,346 [pN:main.1,p:72010,tN:MainThread] Joining monitor thread galaxy.jobs.handler INFO 2024-02-23 13:04:41,346 [pN:main.1,p:72010,tN:MainThread] job handler stop queue stopped galaxy.jobs DEBUG 2024-02-23 13:08:01,783 [pN:main,p:73244,tN:MainThread] Loading job configuration from /scratch/rico/galaxytools/tools/ncbi_fcs_adaptor/planemo_job_conf.xml galaxy.jobs DEBUG 2024-02-23 13:08:01,783 [pN:main,p:73244,tN:MainThread] Read job configuration from file: /scratch/rico/galaxytools/tools/ncbi_fcs_adaptor/planemo_job_conf.xml galaxy.web_stack.handlers INFO 2024-02-23 13:08:01,793 [pN:main,p:73244,tN:MainThread] JobConfiguration: No job handler assignment method is set, defaulting to 'HANDLER_ASSIGNMENT_METHODS.DB_SKIP_LOCKED', set the `assign_with` attribute on <handlers> to override the default galaxy.jobs INFO 2024-02-23 13:08:01,793 [pN:main,p:73244,tN:MainThread] Job handler assignment methods set to: db-skip-locked galaxy.web_stack.handlers DEBUG 2024-02-23 13:08:01,793 [pN:main,p:73244,tN:MainThread] default set to child with id or tag 'docker_local' galaxy.jobs DEBUG 2024-02-23 13:08:01,794 [pN:main,p:73244,tN:MainThread] Done loading job configuration galaxy.security.vault WARNING 2024-02-23 13:08:01,972 [pN:main,p:73244,tN:MainThread] No vault configured. We recommend defining the vault_config_file setting in galaxy.yml galaxy.datatypes.registry DEBUG 2024-02-23 13:08:02,014 [pN:main,p:73244,tN:MainThread] Loading datatypes from /scratch/rico/galaxy/lib/galaxy/config/sample/datatypes_conf.xml.sample galaxy.datatypes.registry DEBUG 2024-02-23 13:08:02,015 [pN:main,p:73244,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension source.h. galaxy.datatypes.registry DEBUG 2024-02-23 13:08:02,015 [pN:main,p:73244,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension source.c. galaxy.datatypes.registry DEBUG 2024-02-23 13:08:02,015 [pN:main,p:73244,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension source.cpp. galaxy.datatypes.registry DEBUG 2024-02-23 13:08:02,015 [pN:main,p:73244,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension source.py. galaxy.datatypes.registry DEBUG 2024-02-23 13:08:02,015 [pN:main,p:73244,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension source.go. galaxy.datatypes.registry DEBUG 2024-02-23 13:08:02,015 [pN:main,p:73244,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension source.rs. galaxy.datatypes.registry DEBUG 2024-02-23 13:08:02,016 [pN:main,p:73244,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension source.cs. galaxy.datatypes.registry DEBUG 2024-02-23 13:08:02,016 [pN:main,p:73244,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:Binary from the datatype registry for extension hep.root. galaxy.datatypes.registry DEBUG 2024-02-23 13:08:02,016 [pN:main,p:73244,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:JP2 from the datatype registry for extension jp2. galaxy.datatypes.registry DEBUG 2024-02-23 13:08:02,016 [pN:main,p:73244,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:Ab1 from the datatype registry for extension ab1. galaxy.datatypes.registry DEBUG 2024-02-23 13:08:02,017 [pN:main,p:73244,tN:MainThread] Retrieved datatype module galaxy.datatypes.assembly:Amos from the datatype registry for extension afg. galaxy.datatypes.registry DEBUG 2024-02-23 13:08:02,017 [pN:main,p:73244,tN:MainThread] Retrieved datatype module galaxy.datatypes.goldenpath:GoldenPath from the datatype registry for extension agp. galaxy.datatypes.registry DEBUG 2024-02-23 13:08:02,018 [pN:main,p:73244,tN:MainThread] Retrieved datatype module galaxy.datatypes.anvio:AnvioComposite from the datatype registry for extension anvio_cog_profile. galaxy.datatypes.registry DEBUG 2024-02-23 13:08:02,018 [pN:main,p:73244,tN:MainThread] Retrieved datatype module galaxy.datatypes.anvio:AnvioComposite from the datatype registry for extension anvio_composite. galaxy.datatypes.registry DEBUG 2024-02-23 13:08:02,018 [pN:main,p:73244,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:Data from the datatype registry for extension anvio_classifier. galaxy.datatypes.registry DEBUG 2024-02-23 13:08:02,019 [pN:main,p:73244,tN:MainThread] Retrieved datatype module galaxy.datatypes.anvio:AnvioContigsDB from the datatype registry for extension anvio_contigs_db. galaxy.datatypes.registry DEBUG 2024-02-23 13:08:02,019 [pN:main,p:73244,tN:MainThread] Retrieved datatype module galaxy.datatypes.anvio:AnvioDB from the datatype registry for extension anvio_db. galaxy.datatypes.registry DEBUG 2024-02-23 13:08:02,019 [pN:main,p:73244,tN:MainThread] Retrieved datatype module galaxy.datatypes.anvio:AnvioGenomesDB from the datatype registry for extension anvio_genomes_db. galaxy.datatypes.registry DEBUG 2024-02-23 13:08:02,019 [pN:main,p:73244,tN:MainThread] Retrieved datatype module galaxy.datatypes.anvio:AnvioPanDB from the datatype registry for extension anvio_pan_db. galaxy.datatypes.registry DEBUG 2024-02-23 13:08:02,019 [pN:main,p:73244,tN:MainThread] Retrieved datatype module galaxy.datatypes.anvio:AnvioComposite from the datatype registry for extension anvio_pfam_profile. galaxy.datatypes.registry DEBUG 2024-02-23 13:08:02,019 [pN:main,p:73244,tN:MainThread] Retrieved datatype module galaxy.datatypes.anvio:AnvioProfileDB from the datatype registry for extension anvio_profile_db. galaxy.datatypes.registry DEBUG 2024-02-23 13:08:02,019 [pN:main,p:73244,tN:MainThread] Retrieved datatype module galaxy.datatypes.anvio:AnvioSamplesDB from the datatype registry for extension anvio_samples_db. galaxy.datatypes.registry DEBUG 2024-02-23 13:08:02,019 [pN:main,p:73244,tN:MainThread] Retrieved datatype module galaxy.datatypes.text:Json from the datatype registry for extension anvio_state. galaxy.datatypes.registry DEBUG 2024-02-23 13:08:02,019 [pN:main,p:73244,tN:MainThread] Retrieved datatype module galaxy.datatypes.anvio:AnvioStructureDB from the datatype registry for extension anvio_structure_db. galaxy.datatypes.registry DEBUG 2024-02-23 13:08:02,019 [pN:main,p:73244,tN:MainThread] Retrieved datatype module galaxy.datatypes.tabular:TSV from the datatype registry for extension anvio_variability. galaxy.datatypes.registry DEBUG 2024-02-23 13:08:02,020 [pN:main,p:73244,tN:MainThread] Retrieved datatype module galaxy.datatypes.text:Arff from the datatype registry for extension arff. galaxy.datatypes.registry DEBUG 2024-02-23 13:08:02,020 [pN:main,p:73244,tN:MainThread] Retrieved datatype module galaxy.datatypes.text:Paf from the datatype registry for extension paf. galaxy.datatypes.registry DEBUG 2024-02-23 13:08:02,020 [pN:main,p:73244,tN:MainThread] Retrieved datatype module galaxy.datatypes.text:Gfa1 from the datatype registry for extension gfa1. galaxy.datatypes.registry DEBUG 2024-02-23 13:08:02,020 [pN:main,p:73244,tN:MainThread] Retrieved datatype module galaxy.datatypes.text:Gfa2 from the datatype registry for extension gfa2. galaxy.datatypes.registry DEBUG 2024-02-23 13:08:02,020 [pN:main,p:73244,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:GenericAsn1 from the datatype registry for extension asn1. galaxy.datatypes.registry DEBUG 2024-02-23 13:08:02,020 [pN:main,p:73244,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:GenericAsn1Binary from the datatype registry for extension asn1-binary. galaxy.datatypes.registry DEBUG 2024-02-23 13:08:02,020 [pN:main,p:73244,tN:MainThread] Retrieved datatype module galaxy.datatypes.sequence:Axt from the datatype registry for extension axt. galaxy.datatypes.registry DEBUG 2024-02-23 13:08:02,020 [pN:main,p:73244,tN:MainThread] Retrieved datatype module galaxy.datatypes.tabular:FeatureLocationIndex from the datatype registry for extension fli. galaxy.datatypes.registry DEBUG 2024-02-23 13:08:02,021 [pN:main,p:73244,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:Bam from the datatype registry for extension bam. galaxy.datatypes.registry DEBUG 2024-02-23 13:08:02,021 [pN:main,p:73244,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:Binary from the datatype registry for extension bai. galaxy.datatypes.registry DEBUG 2024-02-23 13:08:02,021 [pN:main,p:73244,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:BamInputSorted from the datatype registry for extension qname_input_sorted.bam. galaxy.datatypes.registry DEBUG 2024-02-23 13:08:02,021 [pN:main,p:73244,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:BamQuerynameSorted from the datatype registry for extension qname_sorted.bam. galaxy.datatypes.registry DEBUG 2024-02-23 13:08:02,021 [pN:main,p:73244,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:BamNative from the datatype registry for extension unsorted.bam. galaxy.datatypes.registry DEBUG 2024-02-23 13:08:02,021 [pN:main,p:73244,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:ProBam from the datatype registry for extension probam. galaxy.datatypes.registry DEBUG 2024-02-23 13:08:02,021 [pN:main,p:73244,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:CRAM from the datatype registry for extension cram. galaxy.datatypes.registry DEBUG 2024-02-23 13:08:02,021 [pN:main,p:73244,tN:MainThread] Retrieved datatype module galaxy.datatypes.interval:Bed from the datatype registry for extension bed. galaxy.datatypes.registry DEBUG 2024-02-23 13:08:02,021 [pN:main,p:73244,tN:MainThread] Retrieved datatype module galaxy.datatypes.interval:BedGraph from the datatype registry for extension bedgraph. galaxy.datatypes.registry DEBUG 2024-02-23 13:08:02,022 [pN:main,p:73244,tN:MainThread] Retrieved datatype module galaxy.datatypes.interval:BedStrict from the datatype registry for extension bedstrict. galaxy.datatypes.registry DEBUG 2024-02-23 13:08:02,022 [pN:main,p:73244,tN:MainThread] Retrieved datatype module galaxy.datatypes.interval:Bed6 from the datatype registry for extension bed6. galaxy.datatypes.registry DEBUG 2024-02-23 13:08:02,022 [pN:main,p:73244,tN:MainThread] Retrieved datatype module galaxy.datatypes.interval:Bed12 from the datatype registry for extension bed12. galaxy.datatypes.registry DEBUG 2024-02-23 13:08:02,022 [pN:main,p:73244,tN:MainThread] Retrieved datatype module galaxy.datatypes.interval:ProBed from the datatype registry for extension probed. galaxy.datatypes.registry DEBUG 2024-02-23 13:08:02,022 [pN:main,p:73244,tN:MainThread] Retrieved datatype module galaxy.datatypes.chrominfo:ChromInfo from the datatype registry for extension len. galaxy.datatypes.registry DEBUG 2024-02-23 13:08:02,023 [pN:main,p:73244,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:DAA from the datatype registry for extension daa. galaxy.datatypes.registry DEBUG 2024-02-23 13:08:02,023 [pN:main,p:73244,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:RMA6 from the datatype registry for extension rma6. galaxy.datatypes.registry DEBUG 2024-02-23 13:08:02,023 [pN:main,p:73244,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:DMND from the datatype registry for extension dmnd. galaxy.datatypes.registry DEBUG 2024-02-23 13:08:02,023 [pN:main,p:73244,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:Parquet from the datatype registry for extension parquet. galaxy.datatypes.registry DEBUG 2024-02-23 13:08:02,023 [pN:main,p:73244,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:Idat from the datatype registry for extension idat. galaxy.datatypes.registry DEBUG 2024-02-23 13:08:02,023 [pN:main,p:73244,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:BigBed from the datatype registry for extension bigbed. galaxy.datatypes.registry DEBUG 2024-02-23 13:08:02,023 [pN:main,p:73244,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:BigWig from the datatype registry for extension bigwig. galaxy.datatypes.registry DEBUG 2024-02-23 13:08:02,023 [pN:main,p:73244,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:Binary from the datatype registry for extension cxb. galaxy.datatypes.registry DEBUG 2024-02-23 13:08:02,023 [pN:main,p:73244,tN:MainThread] Retrieved datatype module galaxy.datatypes.interval:ChromatinInteractions from the datatype registry for extension chrint. galaxy.datatypes.registry DEBUG 2024-02-23 13:08:02,023 [pN:main,p:73244,tN:MainThread] Retrieved datatype module galaxy.datatypes.tabular:CSV from the datatype registry for extension csv. galaxy.datatypes.registry DEBUG 2024-02-23 13:08:02,024 [pN:main,p:73244,tN:MainThread] Retrieved datatype module galaxy.datatypes.tabular:TSV from the datatype registry for extension tsv. galaxy.datatypes.registry DEBUG 2024-02-23 13:08:02,024 [pN:main,p:73244,tN:MainThread] Retrieved datatype module galaxy.datatypes.tabular:TSV from the datatype registry for extension intermine_tabular. galaxy.datatypes.registry DEBUG 2024-02-23 13:08:02,024 [pN:main,p:73244,tN:MainThread] Retrieved datatype module galaxy.datatypes.interval:CustomTrack from the datatype registry for extension customtrack. galaxy.datatypes.registry DEBUG 2024-02-23 13:08:02,024 [pN:main,p:73244,tN:MainThread] Retrieved datatype module galaxy.datatypes.ngsindex:BowtieColorIndex from the datatype registry for extension bowtie_color_index. galaxy.datatypes.registry DEBUG 2024-02-23 13:08:02,024 [pN:main,p:73244,tN:MainThread] Retrieved datatype module galaxy.datatypes.ngsindex:BowtieBaseIndex from the datatype registry for extension bowtie_base_index. galaxy.datatypes.registry DEBUG 2024-02-23 13:08:02,025 [pN:main,p:73244,tN:MainThread] Retrieved datatype module galaxy.datatypes.sequence:csFasta from the datatype registry for extension csfasta. galaxy.datatypes.registry DEBUG 2024-02-23 13:08:02,025 [pN:main,p:73244,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:Data from the datatype registry for extension data. galaxy.datatypes.registry DEBUG 2024-02-23 13:08:02,025 [pN:main,p:73244,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:Binary from the datatype registry for extension gz. galaxy.datatypes.registry DEBUG 2024-02-23 13:08:02,025 [pN:main,p:73244,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:Binary from the datatype registry for extension binary. galaxy.datatypes.registry DEBUG 2024-02-23 13:08:02,025 [pN:main,p:73244,tN:MainThread] Retrieved datatype module galaxy.datatypes.text:Json from the datatype registry for extension d3_hierarchy. galaxy.datatypes.registry DEBUG 2024-02-23 13:08:02,025 [pN:main,p:73244,tN:MainThread] Retrieved datatype module galaxy.datatypes.text:ImgtJson from the datatype registry for extension imgt.json. galaxy.datatypes.registry DEBUG 2024-02-23 13:08:02,025 [pN:main,p:73244,tN:MainThread] Retrieved datatype module galaxy.datatypes.text:GeoJson from the datatype registry for extension geojson. galaxy.datatypes.registry DEBUG 2024-02-23 13:08:02,025 [pN:main,p:73244,tN:MainThread] Retrieved datatype module galaxy.datatypes.text:Json from the datatype registry for extension data_manager_json. galaxy.datatypes.registry DEBUG 2024-02-23 13:08:02,025 [pN:main,p:73244,tN:MainThread] Retrieved datatype module galaxy.datatypes.sequence:DotBracket from the datatype registry for extension dbn. galaxy.datatypes.registry DEBUG 2024-02-23 13:08:02,025 [pN:main,p:73244,tN:MainThread] Retrieved datatype module galaxy.datatypes.tabular:Tabular from the datatype registry for extension fai. galaxy.datatypes.registry DEBUG 2024-02-23 13:08:02,026 [pN:main,p:73244,tN:MainThread] Retrieved datatype module galaxy.datatypes.sequence:Fasta from the datatype registry for extension fasta. galaxy.datatypes.registry DEBUG 2024-02-23 13:08:02,026 [pN:main,p:73244,tN:MainThread] Retrieved datatype module galaxy.datatypes.sequence:Fastg from the datatype registry for extension fastg. galaxy.datatypes.registry DEBUG 2024-02-23 13:08:02,026 [pN:main,p:73244,tN:MainThread] Retrieved datatype module galaxy.datatypes.sequence:Fastq from the datatype registry for extension fastq. galaxy.datatypes.registry DEBUG 2024-02-23 13:08:02,026 [pN:main,p:73244,tN:MainThread] Retrieved datatype module galaxy.datatypes.sequence:FastqSanger from the datatype registry for extension fastqsanger. galaxy.datatypes.registry DEBUG 2024-02-23 13:08:02,026 [pN:main,p:73244,tN:MainThread] Retrieved datatype module galaxy.datatypes.sequence:FastqSolexa from the datatype registry for extension fastqsolexa. galaxy.datatypes.registry DEBUG 2024-02-23 13:08:02,027 [pN:main,p:73244,tN:MainThread] Retrieved datatype module galaxy.datatypes.sequence:FastqCSSanger from the datatype registry for extension fastqcssanger. galaxy.datatypes.registry DEBUG 2024-02-23 13:08:02,027 [pN:main,p:73244,tN:MainThread] Retrieved datatype module galaxy.datatypes.sequence:FastqIllumina from the datatype registry for extension fastqillumina. galaxy.datatypes.registry DEBUG 2024-02-23 13:08:02,027 [pN:main,p:73244,tN:MainThread] Retrieved datatype module galaxy.datatypes.sequence:SequenceSplitLocations from the datatype registry for extension fqtoc. galaxy.datatypes.registry DEBUG 2024-02-23 13:08:02,027 [pN:main,p:73244,tN:MainThread] Retrieved datatype module galaxy.datatypes.tabular:Eland from the datatype registry for extension eland. galaxy.datatypes.registry DEBUG 2024-02-23 13:08:02,027 [pN:main,p:73244,tN:MainThread] Retrieved datatype module galaxy.datatypes.tabular:ElandMulti from the datatype registry for extension elandmulti. galaxy.datatypes.registry DEBUG 2024-02-23 13:08:02,027 [pN:main,p:73244,tN:MainThread] Retrieved datatype module galaxy.datatypes.tracks:GeneTrack from the datatype registry for extension genetrack. galaxy.datatypes.registry DEBUG 2024-02-23 13:08:02,027 [pN:main,p:73244,tN:MainThread] Retrieved datatype module galaxy.datatypes.interval:Gff from the datatype registry for extension gff. galaxy.datatypes.registry DEBUG 2024-02-23 13:08:02,028 [pN:main,p:73244,tN:MainThread] Retrieved datatype module galaxy.datatypes.interval:Gff3 from the datatype registry for extension gff3. galaxy.datatypes.registry DEBUG 2024-02-23 13:08:02,028 [pN:main,p:73244,tN:MainThread] Retrieved datatype module galaxy.datatypes.images:Gif from the datatype registry for extension gif. galaxy.datatypes.registry DEBUG 2024-02-23 13:08:02,028 [pN:main,p:73244,tN:MainThread] Retrieved datatype module galaxy.datatypes.images:Gmaj from the datatype registry for extension gmaj.zip. galaxy.datatypes.registry DEBUG 2024-02-23 13:08:02,028 [pN:main,p:73244,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension graph_dot. galaxy.datatypes.registry DEBUG 2024-02-23 13:08:02,028 [pN:main,p:73244,tN:MainThread] Retrieved datatype module galaxy.datatypes.interval:Gtf from the datatype registry for extension gtf. galaxy.datatypes.registry DEBUG 2024-02-23 13:08:02,028 [pN:main,p:73244,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:Binary from the datatype registry for extension toolshed.gz. galaxy.datatypes.registry DEBUG 2024-02-23 13:08:02,029 [pN:main,p:73244,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:Binary from the datatype registry for extension hdf4. galaxy.datatypes.registry DEBUG 2024-02-23 13:08:02,029 [pN:main,p:73244,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:H5 from the datatype registry for extension h5. galaxy.datatypes.registry DEBUG 2024-02-23 13:08:02,029 [pN:main,p:73244,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:H5 from the datatype registry for extension scool. galaxy.datatypes.registry DEBUG 2024-02-23 13:08:02,029 [pN:main,p:73244,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:Grib from the datatype registry for extension grib. galaxy.datatypes.registry DEBUG 2024-02-23 13:08:02,029 [pN:main,p:73244,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:Loom from the datatype registry for extension loom. galaxy.datatypes.registry DEBUG 2024-02-23 13:08:02,029 [pN:main,p:73244,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:Anndata from the datatype registry for extension h5ad. galaxy.datatypes.registry DEBUG 2024-02-23 13:08:02,029 [pN:main,p:73244,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:Visium from the datatype registry for extension visium.tar.gz. galaxy.datatypes.registry DEBUG 2024-02-23 13:08:02,029 [pN:main,p:73244,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:H5 from the datatype registry for extension mz5. galaxy.datatypes.registry DEBUG 2024-02-23 13:08:02,029 [pN:main,p:73244,tN:MainThread] Retrieved datatype module galaxy.datatypes.text:Json from the datatype registry for extension hyphy_results.json. galaxy.datatypes.registry DEBUG 2024-02-23 13:08:02,030 [pN:main,p:73244,tN:MainThread] Retrieved datatype module galaxy.datatypes.text:Json from the datatype registry for extension hivtrace. galaxy.datatypes.registry DEBUG 2024-02-23 13:08:02,030 [pN:main,p:73244,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:Cool from the datatype registry for extension cool. galaxy.datatypes.registry DEBUG 2024-02-23 13:08:02,030 [pN:main,p:73244,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:MCool from the datatype registry for extension mcool. galaxy.datatypes.registry DEBUG 2024-02-23 13:08:02,030 [pN:main,p:73244,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:H5MLM from the datatype registry for extension h5mlm. galaxy.datatypes.registry DEBUG 2024-02-23 13:08:02,030 [pN:main,p:73244,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:LudwigModel from the datatype registry for extension ludwig_model. galaxy.datatypes.registry DEBUG 2024-02-23 13:08:02,030 [pN:main,p:73244,tN:MainThread] Retrieved datatype module galaxy.datatypes.text:Html from the datatype registry for extension html. galaxy.datatypes.registry DEBUG 2024-02-23 13:08:02,030 [pN:main,p:73244,tN:MainThread] Retrieved datatype module galaxy.datatypes.text:Html from the datatype registry for extension ludwig_report.html. galaxy.datatypes.registry DEBUG 2024-02-23 13:08:02,030 [pN:main,p:73244,tN:MainThread] Retrieved datatype module galaxy.datatypes.interval:Interval from the datatype registry for extension interval. galaxy.datatypes.registry DEBUG 2024-02-23 13:08:02,030 [pN:main,p:73244,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:Binary from the datatype registry for extension jellyfish. galaxy.datatypes.registry DEBUG 2024-02-23 13:08:02,031 [pN:main,p:73244,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:Binary from the datatype registry for extension ktab. galaxy.datatypes.registry DEBUG 2024-02-23 13:08:02,031 [pN:main,p:73244,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:Binary from the datatype registry for extension hist. galaxy.datatypes.registry DEBUG 2024-02-23 13:08:02,031 [pN:main,p:73244,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:Binary from the datatype registry for extension prof. galaxy.datatypes.registry DEBUG 2024-02-23 13:08:02,112 [pN:main,p:73244,tN:MainThread] Retrieved datatype module galaxy.datatypes.isa:IsaTab from the datatype registry for extension isa-tab. galaxy.datatypes.registry DEBUG 2024-02-23 13:08:02,113 [pN:main,p:73244,tN:MainThread] Retrieved datatype module galaxy.datatypes.isa:IsaJson from the datatype registry for extension isa-json. galaxy.datatypes.registry DEBUG 2024-02-23 13:08:02,113 [pN:main,p:73244,tN:MainThread] Retrieved datatype module galaxy.datatypes.tabular:Tabular from the datatype registry for extension picard_interval_list. galaxy.datatypes.registry DEBUG 2024-02-23 13:08:02,113 [pN:main,p:73244,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension gatk_interval. galaxy.datatypes.registry DEBUG 2024-02-23 13:08:02,113 [pN:main,p:73244,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension gatk_report. galaxy.datatypes.registry DEBUG 2024-02-23 13:08:02,113 [pN:main,p:73244,tN:MainThread] Retrieved datatype module galaxy.datatypes.tabular:Tabular from the datatype registry for extension gatk_dbsnp. galaxy.datatypes.registry DEBUG 2024-02-23 13:08:02,113 [pN:main,p:73244,tN:MainThread] Retrieved datatype module galaxy.datatypes.tabular:Tabular from the datatype registry for extension gatk_tranche. galaxy.datatypes.registry DEBUG 2024-02-23 13:08:02,114 [pN:main,p:73244,tN:MainThread] Retrieved datatype module galaxy.datatypes.tabular:Tabular from the datatype registry for extension gatk_recal. galaxy.datatypes.registry DEBUG 2024-02-23 13:08:02,114 [pN:main,p:73244,tN:MainThread] Retrieved datatype module galaxy.datatypes.tabular:Tabular from the datatype registry for extension cnn. galaxy.datatypes.registry DEBUG 2024-02-23 13:08:02,114 [pN:main,p:73244,tN:MainThread] Retrieved datatype module galaxy.datatypes.tabular:Tabular from the datatype registry for extension cns. galaxy.datatypes.registry DEBUG 2024-02-23 13:08:02,114 [pN:main,p:73244,tN:MainThread] Retrieved datatype module galaxy.datatypes.tabular:Tabular from the datatype registry for extension cnr. galaxy.datatypes.registry DEBUG 2024-02-23 13:08:02,114 [pN:main,p:73244,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension hhr. galaxy.datatypes.registry DEBUG 2024-02-23 13:08:02,114 [pN:main,p:73244,tN:MainThread] Retrieved datatype module galaxy.datatypes.images:Jpg from the datatype registry for extension jpg. galaxy.datatypes.registry DEBUG 2024-02-23 13:08:02,115 [pN:main,p:73244,tN:MainThread] Retrieved datatype module galaxy.datatypes.images:Tiff from the datatype registry for extension tiff. galaxy.datatypes.registry DEBUG 2024-02-23 13:08:02,115 [pN:main,p:73244,tN:MainThread] Retrieved datatype module galaxy.datatypes.images:Tiff from the datatype registry for extension tf2. galaxy.datatypes.registry DEBUG 2024-02-23 13:08:02,115 [pN:main,p:73244,tN:MainThread] Retrieved datatype module galaxy.datatypes.images:Tiff from the datatype registry for extension tf8. galaxy.datatypes.registry DEBUG 2024-02-23 13:08:02,115 [pN:main,p:73244,tN:MainThread] Retrieved datatype module galaxy.datatypes.images:Tiff from the datatype registry for extension btf. galaxy.datatypes.registry DEBUG 2024-02-23 13:08:02,115 [pN:main,p:73244,tN:MainThread] Retrieved datatype module galaxy.datatypes.images:Tiff from the datatype registry for extension tif. galaxy.datatypes.registry DEBUG 2024-02-23 13:08:02,115 [pN:main,p:73244,tN:MainThread] Retrieved datatype module galaxy.datatypes.images:Tiff from the datatype registry for extension svs. galaxy.datatypes.registry DEBUG 2024-02-23 13:08:02,115 [pN:main,p:73244,tN:MainThread] Retrieved datatype module galaxy.datatypes.images:Tiff from the datatype registry for extension scn. galaxy.datatypes.registry DEBUG 2024-02-23 13:08:02,115 [pN:main,p:73244,tN:MainThread] Retrieved datatype module galaxy.datatypes.images:Tiff from the datatype registry for extension bif. galaxy.datatypes.registry DEBUG 2024-02-23 13:08:02,115 [pN:main,p:73244,tN:MainThread] Retrieved datatype module galaxy.datatypes.images:OMETiff from the datatype registry for extension ome.tiff. galaxy.datatypes.registry DEBUG 2024-02-23 13:08:02,116 [pN:main,p:73244,tN:MainThread] Retrieved datatype module galaxy.datatypes.images:Hamamatsu from the datatype registry for extension vms. galaxy.datatypes.registry DEBUG 2024-02-23 13:08:02,116 [pN:main,p:73244,tN:MainThread] Retrieved datatype module galaxy.datatypes.images:Hamamatsu from the datatype registry for extension vmu. galaxy.datatypes.registry DEBUG 2024-02-23 13:08:02,116 [pN:main,p:73244,tN:MainThread] Retrieved datatype module galaxy.datatypes.images:Hamamatsu from the datatype registry for extension ndpi. galaxy.datatypes.registry DEBUG 2024-02-23 13:08:02,116 [pN:main,p:73244,tN:MainThread] Retrieved datatype module galaxy.datatypes.images:Mirax from the datatype registry for extension mrxs. galaxy.datatypes.registry DEBUG 2024-02-23 13:08:02,116 [pN:main,p:73244,tN:MainThread] Retrieved datatype module galaxy.datatypes.images:Sakura from the datatype registry for extension svslide. galaxy.datatypes.registry DEBUG 2024-02-23 13:08:02,116 [pN:main,p:73244,tN:MainThread] Retrieved datatype module galaxy.datatypes.images:Bmp from the datatype registry for extension bmp. galaxy.datatypes.registry DEBUG 2024-02-23 13:08:02,116 [pN:main,p:73244,tN:MainThread] Retrieved datatype module galaxy.datatypes.images:Im from the datatype registry for extension im. galaxy.datatypes.registry DEBUG 2024-02-23 13:08:02,116 [pN:main,p:73244,tN:MainThread] Retrieved datatype module galaxy.datatypes.images:Pcd from the datatype registry for extension pcd. galaxy.datatypes.registry DEBUG 2024-02-23 13:08:02,116 [pN:main,p:73244,tN:MainThread] Retrieved datatype module galaxy.datatypes.images:Pcx from the datatype registry for extension pcx. galaxy.datatypes.registry DEBUG 2024-02-23 13:08:02,116 [pN:main,p:73244,tN:MainThread] Retrieved datatype module galaxy.datatypes.images:Ppm from the datatype registry for extension ppm. galaxy.datatypes.registry DEBUG 2024-02-23 13:08:02,117 [pN:main,p:73244,tN:MainThread] Retrieved datatype module galaxy.datatypes.images:Psd from the datatype registry for extension psd. galaxy.datatypes.registry DEBUG 2024-02-23 13:08:02,117 [pN:main,p:73244,tN:MainThread] Retrieved datatype module galaxy.datatypes.images:Xbm from the datatype registry for extension xbm. galaxy.datatypes.registry DEBUG 2024-02-23 13:08:02,117 [pN:main,p:73244,tN:MainThread] Retrieved datatype module galaxy.datatypes.images:Xpm from the datatype registry for extension xpm. galaxy.datatypes.registry DEBUG 2024-02-23 13:08:02,117 [pN:main,p:73244,tN:MainThread] Retrieved datatype module galaxy.datatypes.images:Rgb from the datatype registry for extension rgb. galaxy.datatypes.registry DEBUG 2024-02-23 13:08:02,117 [pN:main,p:73244,tN:MainThread] Retrieved datatype module galaxy.datatypes.images:Pbm from the datatype registry for extension pbm. galaxy.datatypes.registry DEBUG 2024-02-23 13:08:02,117 [pN:main,p:73244,tN:MainThread] Retrieved datatype module galaxy.datatypes.images:Pgm from the datatype registry for extension pgm. galaxy.datatypes.registry DEBUG 2024-02-23 13:08:02,117 [pN:main,p:73244,tN:MainThread] Retrieved datatype module galaxy.datatypes.images:Nrrd from the datatype registry for extension nrrd. galaxy.datatypes.registry DEBUG 2024-02-23 13:08:02,117 [pN:main,p:73244,tN:MainThread] Retrieved datatype module galaxy.datatypes.images:Nrrd from the datatype registry for extension nhdr. galaxy.datatypes.registry DEBUG 2024-02-23 13:08:02,117 [pN:main,p:73244,tN:MainThread] Retrieved datatype module galaxy.datatypes.sequence:RNADotPlotMatrix from the datatype registry for extension rna_eps. galaxy.datatypes.registry DEBUG 2024-02-23 13:08:02,118 [pN:main,p:73244,tN:MainThread] Retrieved datatype module galaxy.datatypes.qiime2:QIIME2Artifact from the datatype registry for extension qza. galaxy.datatypes.registry DEBUG 2024-02-23 13:08:02,118 [pN:main,p:73244,tN:MainThread] Retrieved datatype module galaxy.datatypes.qiime2:QIIME2Visualization from the datatype registry for extension qzv. galaxy.datatypes.registry DEBUG 2024-02-23 13:08:02,118 [pN:main,p:73244,tN:MainThread] Retrieved datatype module galaxy.datatypes.qiime2:QIIME2Metadata from the datatype registry for extension qiime2.tabular. galaxy.datatypes.registry DEBUG 2024-02-23 13:08:02,118 [pN:main,p:73244,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:CompressedZipArchive from the datatype registry for extension zip. galaxy.datatypes.registry DEBUG 2024-02-23 13:08:02,119 [pN:main,p:73244,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:CompressedZipArchive from the datatype registry for extension ncbi_genome_dataset.zip. galaxy.datatypes.registry DEBUG 2024-02-23 13:08:02,119 [pN:main,p:73244,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:CompressedArchive from the datatype registry for extension tar. galaxy.datatypes.registry DEBUG 2024-02-23 13:08:02,119 [pN:main,p:73244,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:Directory from the datatype registry for extension directory. galaxy.datatypes.registry DEBUG 2024-02-23 13:08:02,119 [pN:main,p:73244,tN:MainThread] Retrieved datatype module galaxy.datatypes.text:Yaml from the datatype registry for extension yaml. galaxy.datatypes.registry DEBUG 2024-02-23 13:08:02,119 [pN:main,p:73244,tN:MainThread] Retrieved datatype module galaxy.datatypes.tabular:Tabular from the datatype registry for extension mrm. galaxy.datatypes.registry DEBUG 2024-02-23 13:08:02,121 [pN:main,p:73244,tN:MainThread] Retrieved datatype module galaxy.datatypes.proteomics:Dta from the datatype registry for extension dta. galaxy.datatypes.registry DEBUG 2024-02-23 13:08:02,121 [pN:main,p:73244,tN:MainThread] Retrieved datatype module galaxy.datatypes.proteomics:Dta2d from the datatype registry for extension dta2d. galaxy.datatypes.registry DEBUG 2024-02-23 13:08:02,122 [pN:main,p:73244,tN:MainThread] Retrieved datatype module galaxy.datatypes.proteomics:Edta from the datatype registry for extension edta. galaxy.datatypes.registry DEBUG 2024-02-23 13:08:02,122 [pN:main,p:73244,tN:MainThread] Retrieved datatype module galaxy.datatypes.proteomics:PepXml from the datatype registry for extension pepxml. galaxy.datatypes.registry DEBUG 2024-02-23 13:08:02,122 [pN:main,p:73244,tN:MainThread] Retrieved datatype module galaxy.datatypes.proteomics:PepXml from the datatype registry for extension raw_pepxml. galaxy.datatypes.registry DEBUG 2024-02-23 13:08:02,122 [pN:main,p:73244,tN:MainThread] Retrieved datatype module galaxy.datatypes.proteomics:PepXml from the datatype registry for extension peptideprophet_pepxml. galaxy.datatypes.registry DEBUG 2024-02-23 13:08:02,122 [pN:main,p:73244,tN:MainThread] Retrieved datatype module galaxy.datatypes.proteomics:PepXml from the datatype registry for extension interprophet_pepxml. galaxy.datatypes.registry DEBUG 2024-02-23 13:08:02,122 [pN:main,p:73244,tN:MainThread] Retrieved datatype module galaxy.datatypes.proteomics:ProtXML from the datatype registry for extension protxml. galaxy.datatypes.registry DEBUG 2024-02-23 13:08:02,122 [pN:main,p:73244,tN:MainThread] Retrieved datatype module galaxy.datatypes.proteomics:ParamXml from the datatype registry for extension paramxml. galaxy.datatypes.registry DEBUG 2024-02-23 13:08:02,122 [pN:main,p:73244,tN:MainThread] Retrieved datatype module galaxy.datatypes.proteomics:Kroenik from the datatype registry for extension kroenik. galaxy.datatypes.registry DEBUG 2024-02-23 13:08:02,122 [pN:main,p:73244,tN:MainThread] Retrieved datatype module galaxy.datatypes.proteomics:PepList from the datatype registry for extension peplist. galaxy.datatypes.registry DEBUG 2024-02-23 13:08:02,123 [pN:main,p:73244,tN:MainThread] Retrieved datatype module galaxy.datatypes.proteomics:PSMS from the datatype registry for extension psms. galaxy.datatypes.registry DEBUG 2024-02-23 13:08:02,123 [pN:main,p:73244,tN:MainThread] Retrieved datatype module galaxy.datatypes.proteomics:PepXmlReport from the datatype registry for extension pepxml.tsv. galaxy.datatypes.registry DEBUG 2024-02-23 13:08:02,123 [pN:main,p:73244,tN:MainThread] Retrieved datatype module galaxy.datatypes.proteomics:ProtXmlReport from the datatype registry for extension protxml.tsv. galaxy.datatypes.registry DEBUG 2024-02-23 13:08:02,123 [pN:main,p:73244,tN:MainThread] Retrieved datatype module galaxy.datatypes.proteomics:MascotDat from the datatype registry for extension mascotdat. galaxy.datatypes.registry DEBUG 2024-02-23 13:08:02,123 [pN:main,p:73244,tN:MainThread] Retrieved datatype module galaxy.datatypes.proteomics:MzIdentML from the datatype registry for extension mzid. galaxy.datatypes.registry DEBUG 2024-02-23 13:08:02,123 [pN:main,p:73244,tN:MainThread] Retrieved datatype module galaxy.datatypes.proteomics:IdXML from the datatype registry for extension idxml. galaxy.datatypes.registry DEBUG 2024-02-23 13:08:02,123 [pN:main,p:73244,tN:MainThread] Retrieved datatype module galaxy.datatypes.proteomics:TandemXML from the datatype registry for extension tandem. galaxy.datatypes.registry DEBUG 2024-02-23 13:08:02,123 [pN:main,p:73244,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension sirius.ms. galaxy.datatypes.registry DEBUG 2024-02-23 13:08:02,123 [pN:main,p:73244,tN:MainThread] Retrieved datatype module galaxy.datatypes.proteomics:ThermoRAW from the datatype registry for extension thermo.raw. galaxy.datatypes.registry DEBUG 2024-02-23 13:08:02,123 [pN:main,p:73244,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:BafTar from the datatype registry for extension brukerbaf.d.tar. galaxy.datatypes.registry DEBUG 2024-02-23 13:08:02,123 [pN:main,p:73244,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:YepTar from the datatype registry for extension agilentbrukeryep.d.tar. galaxy.datatypes.registry DEBUG 2024-02-23 13:08:02,124 [pN:main,p:73244,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:TdfTar from the datatype registry for extension brukertdf.d.tar. galaxy.datatypes.registry DEBUG 2024-02-23 13:08:02,124 [pN:main,p:73244,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:MassHunterTar from the datatype registry for extension agilentmasshunter.d.tar. galaxy.datatypes.registry DEBUG 2024-02-23 13:08:02,124 [pN:main,p:73244,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:MassLynxTar from the datatype registry for extension watersmasslynx.raw.tar. galaxy.datatypes.registry DEBUG 2024-02-23 13:08:02,124 [pN:main,p:73244,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:WiffTar from the datatype registry for extension wiff.tar. galaxy.datatypes.registry DEBUG 2024-02-23 13:08:02,124 [pN:main,p:73244,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:Wiff2Tar from the datatype registry for extension wiff2.tar. galaxy.datatypes.registry DEBUG 2024-02-23 13:08:02,124 [pN:main,p:73244,tN:MainThread] Retrieved datatype module galaxy.datatypes.proteomics:MascotXML from the datatype registry for extension mascotxml. galaxy.datatypes.registry DEBUG 2024-02-23 13:08:02,124 [pN:main,p:73244,tN:MainThread] Retrieved datatype module galaxy.datatypes.proteomics:MzTab from the datatype registry for extension mztab. galaxy.datatypes.registry DEBUG 2024-02-23 13:08:02,124 [pN:main,p:73244,tN:MainThread] Retrieved datatype module galaxy.datatypes.proteomics:MzTab2 from the datatype registry for extension mztab2. galaxy.datatypes.registry DEBUG 2024-02-23 13:08:02,124 [pN:main,p:73244,tN:MainThread] Retrieved datatype module galaxy.datatypes.proteomics:MzML from the datatype registry for extension mzml. galaxy.datatypes.registry DEBUG 2024-02-23 13:08:02,124 [pN:main,p:73244,tN:MainThread] Retrieved datatype module galaxy.datatypes.proteomics:NmrML from the datatype registry for extension nmrml. galaxy.datatypes.registry DEBUG 2024-02-23 13:08:02,124 [pN:main,p:73244,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:Meryldb from the datatype registry for extension meryldb. galaxy.datatypes.registry DEBUG 2024-02-23 13:08:02,125 [pN:main,p:73244,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:Bref3 from the datatype registry for extension bref3. galaxy.datatypes.registry DEBUG 2024-02-23 13:08:02,125 [pN:main,p:73244,tN:MainThread] Retrieved datatype module galaxy.datatypes.proteomics:Mgf from the datatype registry for extension mgf. galaxy.datatypes.registry DEBUG 2024-02-23 13:08:02,125 [pN:main,p:73244,tN:MainThread] Retrieved datatype module galaxy.datatypes.proteomics:Wiff from the datatype registry for extension wiff. galaxy.datatypes.registry DEBUG 2024-02-23 13:08:02,125 [pN:main,p:73244,tN:MainThread] Retrieved datatype module galaxy.datatypes.proteomics:Wiff2 from the datatype registry for extension wiff2. galaxy.datatypes.registry DEBUG 2024-02-23 13:08:02,125 [pN:main,p:73244,tN:MainThread] Retrieved datatype module galaxy.datatypes.proteomics:MzXML from the datatype registry for extension mzxml. galaxy.datatypes.registry DEBUG 2024-02-23 13:08:02,125 [pN:main,p:73244,tN:MainThread] Retrieved datatype module galaxy.datatypes.proteomics:MzData from the datatype registry for extension mzdata. galaxy.datatypes.registry DEBUG 2024-02-23 13:08:02,125 [pN:main,p:73244,tN:MainThread] Retrieved datatype module galaxy.datatypes.proteomics:Ms2 from the datatype registry for extension ms2. galaxy.datatypes.registry DEBUG 2024-02-23 13:08:02,125 [pN:main,p:73244,tN:MainThread] Retrieved datatype module galaxy.datatypes.proteomics:MzQuantML from the datatype registry for extension mzq. galaxy.datatypes.registry DEBUG 2024-02-23 13:08:02,125 [pN:main,p:73244,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:SQlite from the datatype registry for extension sqlite. galaxy.datatypes.registry DEBUG 2024-02-23 13:08:02,126 [pN:main,p:73244,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:MzSQlite from the datatype registry for extension mz.sqlite. galaxy.datatypes.registry DEBUG 2024-02-23 13:08:02,126 [pN:main,p:73244,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:OSW from the datatype registry for extension osw. galaxy.datatypes.registry DEBUG 2024-02-23 13:08:02,126 [pN:main,p:73244,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:PQP from the datatype registry for extension pqp. galaxy.datatypes.registry DEBUG 2024-02-23 13:08:02,126 [pN:main,p:73244,tN:MainThread] Retrieved datatype module galaxy.datatypes.proteomics:TraML from the datatype registry for extension traml. galaxy.datatypes.registry DEBUG 2024-02-23 13:08:02,126 [pN:main,p:73244,tN:MainThread] Retrieved datatype module galaxy.datatypes.proteomics:TrafoXML from the datatype registry for extension trafoxml. galaxy.datatypes.registry DEBUG 2024-02-23 13:08:02,126 [pN:main,p:73244,tN:MainThread] Retrieved datatype module galaxy.datatypes.proteomics:FeatureXML from the datatype registry for extension featurexml. galaxy.datatypes.registry DEBUG 2024-02-23 13:08:02,126 [pN:main,p:73244,tN:MainThread] Retrieved datatype module galaxy.datatypes.proteomics:ConsensusXML from the datatype registry for extension consensusxml. galaxy.datatypes.registry DEBUG 2024-02-23 13:08:02,126 [pN:main,p:73244,tN:MainThread] Retrieved datatype module galaxy.datatypes.proteomics:UniProtXML from the datatype registry for extension uniprotxml. galaxy.datatypes.registry DEBUG 2024-02-23 13:08:02,126 [pN:main,p:73244,tN:MainThread] Retrieved datatype module galaxy.datatypes.proteomics:XquestXML from the datatype registry for extension xquest.xml. galaxy.datatypes.registry DEBUG 2024-02-23 13:08:02,126 [pN:main,p:73244,tN:MainThread] Retrieved datatype module galaxy.datatypes.proteomics:XquestSpecXML from the datatype registry for extension spec.xml. galaxy.datatypes.registry DEBUG 2024-02-23 13:08:02,126 [pN:main,p:73244,tN:MainThread] Retrieved datatype module galaxy.datatypes.proteomics:QCML from the datatype registry for extension qcml. galaxy.datatypes.registry DEBUG 2024-02-23 13:08:02,126 [pN:main,p:73244,tN:MainThread] Retrieved datatype module galaxy.datatypes.text:Json from the datatype registry for extension mzqc. galaxy.datatypes.registry DEBUG 2024-02-23 13:08:02,127 [pN:main,p:73244,tN:MainThread] Retrieved datatype module galaxy.datatypes.proteomics:Msp from the datatype registry for extension msp. galaxy.datatypes.registry DEBUG 2024-02-23 13:08:02,127 [pN:main,p:73244,tN:MainThread] Retrieved datatype module galaxy.datatypes.proteomics:SPLibNoIndex from the datatype registry for extension splib_noindex. galaxy.datatypes.registry DEBUG 2024-02-23 13:08:02,127 [pN:main,p:73244,tN:MainThread] Retrieved datatype module galaxy.datatypes.proteomics:SPLib from the datatype registry for extension splib. galaxy.datatypes.registry DEBUG 2024-02-23 13:08:02,127 [pN:main,p:73244,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:BlibSQlite from the datatype registry for extension blib. galaxy.datatypes.registry DEBUG 2024-02-23 13:08:02,127 [pN:main,p:73244,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:DlibSQlite from the datatype registry for extension dlib. galaxy.datatypes.registry DEBUG 2024-02-23 13:08:02,127 [pN:main,p:73244,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:ElibSQlite from the datatype registry for extension elib. galaxy.datatypes.registry DEBUG 2024-02-23 13:08:02,127 [pN:main,p:73244,tN:MainThread] Retrieved datatype module galaxy.datatypes.proteomics:XHunterAslFormat from the datatype registry for extension hlf. galaxy.datatypes.registry DEBUG 2024-02-23 13:08:02,127 [pN:main,p:73244,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:IdpDB from the datatype registry for extension idpdb. galaxy.datatypes.registry DEBUG 2024-02-23 13:08:02,127 [pN:main,p:73244,tN:MainThread] Retrieved datatype module galaxy.datatypes.proteomics:Sf3 from the datatype registry for extension sf3. galaxy.datatypes.registry DEBUG 2024-02-23 13:08:02,127 [pN:main,p:73244,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:Binary from the datatype registry for extension cps. galaxy.datatypes.registry DEBUG 2024-02-23 13:08:02,128 [pN:main,p:73244,tN:MainThread] Retrieved datatype module galaxy.datatypes.tabular:ConnectivityTable from the datatype registry for extension ct. galaxy.datatypes.registry DEBUG 2024-02-23 13:08:02,128 [pN:main,p:73244,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:PostgresqlArchive from the datatype registry for extension postgresql. galaxy.datatypes.registry DEBUG 2024-02-23 13:08:02,128 [pN:main,p:73244,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:MongoDBArchive from the datatype registry for extension mongodb. galaxy.datatypes.registry DEBUG 2024-02-23 13:08:02,128 [pN:main,p:73244,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:GeneNoteBook from the datatype registry for extension genenotebook. galaxy.datatypes.registry DEBUG 2024-02-23 13:08:02,128 [pN:main,p:73244,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:SearchGuiArchive from the datatype registry for extension searchgui_archive. galaxy.datatypes.registry DEBUG 2024-02-23 13:08:02,128 [pN:main,p:73244,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:Fast5Archive from the datatype registry for extension fast5.tar. galaxy.datatypes.registry DEBUG 2024-02-23 13:08:02,128 [pN:main,p:73244,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:Fast5ArchiveGz from the datatype registry for extension fast5.tar.gz. galaxy.datatypes.registry DEBUG 2024-02-23 13:08:02,128 [pN:main,p:73244,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:Fast5ArchiveBz2 from the datatype registry for extension fast5.tar.bz2. galaxy.datatypes.registry DEBUG 2024-02-23 13:08:02,128 [pN:main,p:73244,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:CompressedArchive from the datatype registry for extension peptideshaker_archive. galaxy.datatypes.registry DEBUG 2024-02-23 13:08:02,128 [pN:main,p:73244,tN:MainThread] Retrieved datatype module galaxy.datatypes.tabular:Tabular from the datatype registry for extension percin. galaxy.datatypes.registry DEBUG 2024-02-23 13:08:02,129 [pN:main,p:73244,tN:MainThread] Retrieved datatype module galaxy.datatypes.xml:GenericXml from the datatype registry for extension percout. galaxy.datatypes.registry DEBUG 2024-02-23 13:08:02,129 [pN:main,p:73244,tN:MainThread] Retrieved datatype module galaxy.datatypes.tabular:Tabular from the datatype registry for extension hardklor. galaxy.datatypes.registry DEBUG 2024-02-23 13:08:02,129 [pN:main,p:73244,tN:MainThread] Retrieved datatype module galaxy.datatypes.tabular:Tabular from the datatype registry for extension kronik. galaxy.datatypes.registry DEBUG 2024-02-23 13:08:02,129 [pN:main,p:73244,tN:MainThread] Retrieved datatype module galaxy.datatypes.proteomics:ImzML from the datatype registry for extension imzml. galaxy.datatypes.registry DEBUG 2024-02-23 13:08:02,129 [pN:main,p:73244,tN:MainThread] Retrieved datatype module galaxy.datatypes.images:Analyze75 from the datatype registry for extension analyze75. galaxy.datatypes.registry DEBUG 2024-02-23 13:08:02,129 [pN:main,p:73244,tN:MainThread] Retrieved datatype module galaxy.datatypes.images:Nifti1 from the datatype registry for extension nii1. galaxy.datatypes.registry DEBUG 2024-02-23 13:08:02,129 [pN:main,p:73244,tN:MainThread] Retrieved datatype module galaxy.datatypes.images:Nifti2 from the datatype registry for extension nii2. galaxy.datatypes.registry DEBUG 2024-02-23 13:08:02,130 [pN:main,p:73244,tN:MainThread] Retrieved datatype module galaxy.datatypes.images:Gifti from the datatype registry for extension gii. galaxy.datatypes.registry DEBUG 2024-02-23 13:08:02,130 [pN:main,p:73244,tN:MainThread] Retrieved datatype module galaxy.datatypes.images:Tck from the datatype registry for extension tck. galaxy.datatypes.registry DEBUG 2024-02-23 13:08:02,130 [pN:main,p:73244,tN:MainThread] Retrieved datatype module galaxy.datatypes.images:Trk from the datatype registry for extension trk. galaxy.datatypes.registry DEBUG 2024-02-23 13:08:02,130 [pN:main,p:73244,tN:MainThread] Retrieved datatype module galaxy.datatypes.images:Mrc2014 from the datatype registry for extension mrc. galaxy.datatypes.registry DEBUG 2024-02-23 13:08:02,130 [pN:main,p:73244,tN:MainThread] Retrieved datatype module galaxy.datatypes.images:Star from the datatype registry for extension star. galaxy.datatypes.registry DEBUG 2024-02-23 13:08:02,130 [pN:main,p:73244,tN:MainThread] Retrieved datatype module galaxy.datatypes.proteomics:PEFF from the datatype registry for extension peff. galaxy.datatypes.registry DEBUG 2024-02-23 13:08:02,130 [pN:main,p:73244,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension toml. galaxy.datatypes.registry DEBUG 2024-02-23 13:08:02,131 [pN:main,p:73244,tN:MainThread] Retrieved datatype module galaxy.datatypes.flow:FCS from the datatype registry for extension fcs. galaxy.datatypes.registry DEBUG 2024-02-23 13:08:02,131 [pN:main,p:73244,tN:MainThread] Retrieved datatype module galaxy.datatypes.tabular:Tabular from the datatype registry for extension flowtext. galaxy.datatypes.registry DEBUG 2024-02-23 13:08:02,131 [pN:main,p:73244,tN:MainThread] Retrieved datatype module galaxy.datatypes.tabular:Tabular from the datatype registry for extension flowclr. galaxy.datatypes.registry DEBUG 2024-02-23 13:08:02,131 [pN:main,p:73244,tN:MainThread] Retrieved datatype module galaxy.datatypes.tabular:Tabular from the datatype registry for extension flowmfi. galaxy.datatypes.registry DEBUG 2024-02-23 13:08:02,131 [pN:main,p:73244,tN:MainThread] Retrieved datatype module galaxy.datatypes.tabular:Tabular from the datatype registry for extension flowstat1. galaxy.datatypes.registry DEBUG 2024-02-23 13:08:02,131 [pN:main,p:73244,tN:MainThread] Retrieved datatype module galaxy.datatypes.tabular:Tabular from the datatype registry for extension flowstat2. galaxy.datatypes.registry DEBUG 2024-02-23 13:08:02,131 [pN:main,p:73244,tN:MainThread] Retrieved datatype module galaxy.datatypes.tabular:Tabular from the datatype registry for extension flowstat3. galaxy.datatypes.registry DEBUG 2024-02-23 13:08:02,132 [pN:main,p:73244,tN:MainThread] Retrieved datatype module galaxy.datatypes.tabular:Tabular from the datatype registry for extension flowscore. galaxy.datatypes.registry DEBUG 2024-02-23 13:08:02,132 [pN:main,p:73244,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:RData from the datatype registry for extension flowframe. galaxy.datatypes.registry DEBUG 2024-02-23 13:08:02,132 [pN:main,p:73244,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:RData from the datatype registry for extension fsom. galaxy.datatypes.registry DEBUG 2024-02-23 13:08:02,132 [pN:main,p:73244,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:RData from the datatype registry for extension flowset. galaxy.datatypes.registry DEBUG 2024-02-23 13:08:02,132 [pN:main,p:73244,tN:MainThread] Retrieved datatype module galaxy.datatypes.tabular:Tabular from the datatype registry for extension metacyto_clr.txt. galaxy.datatypes.registry DEBUG 2024-02-23 13:08:02,133 [pN:main,p:73244,tN:MainThread] Retrieved datatype module galaxy.datatypes.metacyto:mSummary from the datatype registry for extension metacyto_summary.txt. galaxy.datatypes.registry DEBUG 2024-02-23 13:08:02,133 [pN:main,p:73244,tN:MainThread] Retrieved datatype module galaxy.datatypes.metacyto:mStats from the datatype registry for extension metacyto_stats.txt. galaxy.datatypes.registry DEBUG 2024-02-23 13:08:02,133 [pN:main,p:73244,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:CompressedArchive from the datatype registry for extension deeptools_compute_matrix_archive. galaxy.datatypes.registry DEBUG 2024-02-23 13:08:02,133 [pN:main,p:73244,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:CompressedArchive from the datatype registry for extension deeptools_coverage_matrix. galaxy.datatypes.registry DEBUG 2024-02-23 13:08:02,133 [pN:main,p:73244,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:NetCDF from the datatype registry for extension netcdf. galaxy.datatypes.registry DEBUG 2024-02-23 13:08:02,133 [pN:main,p:73244,tN:MainThread] Retrieved datatype module galaxy.datatypes.images:Eps from the datatype registry for extension eps. galaxy.datatypes.registry DEBUG 2024-02-23 13:08:02,133 [pN:main,p:73244,tN:MainThread] Retrieved datatype module galaxy.datatypes.images:Rast from the datatype registry for extension rast. galaxy.datatypes.registry DEBUG 2024-02-23 13:08:02,133 [pN:main,p:73244,tN:MainThread] Retrieved datatype module galaxy.datatypes.images:Laj from the datatype registry for extension laj. galaxy.datatypes.registry DEBUG 2024-02-23 13:08:02,133 [pN:main,p:73244,tN:MainThread] Retrieved datatype module galaxy.datatypes.sequence:Lav from the datatype registry for extension lav. galaxy.datatypes.registry DEBUG 2024-02-23 13:08:02,134 [pN:main,p:73244,tN:MainThread] Retrieved datatype module galaxy.datatypes.sequence:Maf from the datatype registry for extension maf. galaxy.datatypes.registry DEBUG 2024-02-23 13:08:02,134 [pN:main,p:73244,tN:MainThread] Retrieved datatype module galaxy.datatypes.sequence:MafCustomTrack from the datatype registry for extension mafcustomtrack. galaxy.datatypes.registry DEBUG 2024-02-23 13:08:02,134 [pN:main,p:73244,tN:MainThread] Retrieved datatype module galaxy.datatypes.tabular:MatrixMarket from the datatype registry for extension mtx. galaxy.datatypes.registry DEBUG 2024-02-23 13:08:02,134 [pN:main,p:73244,tN:MainThread] Retrieved datatype module galaxy.datatypes.tabular:CMAP from the datatype registry for extension cmap. galaxy.datatypes.registry DEBUG 2024-02-23 13:08:02,134 [pN:main,p:73244,tN:MainThread] Retrieved datatype module galaxy.datatypes.interval:ENCODEPeak from the datatype registry for extension encodepeak. galaxy.datatypes.registry DEBUG 2024-02-23 13:08:02,134 [pN:main,p:73244,tN:MainThread] Retrieved datatype module galaxy.datatypes.images:Pdf from the datatype registry for extension pdf. galaxy.datatypes.registry DEBUG 2024-02-23 13:08:02,134 [pN:main,p:73244,tN:MainThread] Retrieved datatype module galaxy.datatypes.tabular:Pileup from the datatype registry for extension pileup. galaxy.datatypes.registry DEBUG 2024-02-23 13:08:02,134 [pN:main,p:73244,tN:MainThread] Retrieved datatype module galaxy.datatypes.tabular:Psl from the datatype registry for extension psl. galaxy.datatypes.registry DEBUG 2024-02-23 13:08:02,134 [pN:main,p:73244,tN:MainThread] Retrieved datatype module galaxy.datatypes.text:Obo from the datatype registry for extension obo. galaxy.datatypes.registry DEBUG 2024-02-23 13:08:02,134 [pN:main,p:73244,tN:MainThread] Retrieved datatype module galaxy.datatypes.xml:Owl from the datatype registry for extension owl. galaxy.datatypes.registry DEBUG 2024-02-23 13:08:02,135 [pN:main,p:73244,tN:MainThread] Retrieved datatype module galaxy.datatypes.images:Png from the datatype registry for extension png. galaxy.datatypes.registry DEBUG 2024-02-23 13:08:02,135 [pN:main,p:73244,tN:MainThread] Retrieved datatype module galaxy.datatypes.qualityscore:QualityScore from the datatype registry for extension qual. galaxy.datatypes.registry DEBUG 2024-02-23 13:08:02,135 [pN:main,p:73244,tN:MainThread] Retrieved datatype module galaxy.datatypes.qualityscore:QualityScoreSolexa from the datatype registry for extension qualsolexa. galaxy.datatypes.registry DEBUG 2024-02-23 13:08:02,135 [pN:main,p:73244,tN:MainThread] Retrieved datatype module galaxy.datatypes.qualityscore:QualityScoreIllumina from the datatype registry for extension qualillumina. galaxy.datatypes.registry DEBUG 2024-02-23 13:08:02,135 [pN:main,p:73244,tN:MainThread] Retrieved datatype module galaxy.datatypes.qualityscore:QualityScoreSOLiD from the datatype registry for extension qualsolid. galaxy.datatypes.registry DEBUG 2024-02-23 13:08:02,135 [pN:main,p:73244,tN:MainThread] Retrieved datatype module galaxy.datatypes.qualityscore:QualityScore454 from the datatype registry for extension qual454. galaxy.datatypes.registry DEBUG 2024-02-23 13:08:02,135 [pN:main,p:73244,tN:MainThread] Retrieved datatype module galaxy.datatypes.assembly:Roadmaps from the datatype registry for extension roadmaps. galaxy.datatypes.registry DEBUG 2024-02-23 13:08:02,135 [pN:main,p:73244,tN:MainThread] Retrieved datatype module galaxy.datatypes.tabular:Sam from the datatype registry for extension sam. galaxy.datatypes.registry DEBUG 2024-02-23 13:08:02,135 [pN:main,p:73244,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:Scf from the datatype registry for extension scf. galaxy.datatypes.registry DEBUG 2024-02-23 13:08:02,135 [pN:main,p:73244,tN:MainThread] Retrieved datatype module galaxy.datatypes.assembly:Sequences from the datatype registry for extension sequences. galaxy.datatypes.registry DEBUG 2024-02-23 13:08:02,135 [pN:main,p:73244,tN:MainThread] Retrieved datatype module galaxy.datatypes.text:SnpEffDb from the datatype registry for extension snpeffdb. galaxy.datatypes.registry DEBUG 2024-02-23 13:08:02,136 [pN:main,p:73244,tN:MainThread] Retrieved datatype module galaxy.datatypes.text:SnpSiftDbNSFP from the datatype registry for extension snpsiftdbnsfp. galaxy.datatypes.registry DEBUG 2024-02-23 13:08:02,136 [pN:main,p:73244,tN:MainThread] Retrieved datatype module galaxy.datatypes.tabular:Tabular from the datatype registry for extension dbnsfp.tabular. galaxy.datatypes.registry DEBUG 2024-02-23 13:08:02,136 [pN:main,p:73244,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:Sff from the datatype registry for extension sff. galaxy.datatypes.registry DEBUG 2024-02-23 13:08:02,136 [pN:main,p:73244,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:Sra from the datatype registry for extension sra. galaxy.datatypes.registry DEBUG 2024-02-23 13:08:02,136 [pN:main,p:73244,tN:MainThread] Retrieved datatype module galaxy.datatypes.tabular:SraManifest from the datatype registry for extension sra_manifest.tabular. galaxy.datatypes.registry DEBUG 2024-02-23 13:08:02,136 [pN:main,p:73244,tN:MainThread] Retrieved datatype module galaxy.datatypes.xml:GenericXml from the datatype registry for extension svg. galaxy.datatypes.registry DEBUG 2024-02-23 13:08:02,136 [pN:main,p:73244,tN:MainThread] Retrieved datatype module galaxy.datatypes.tabular:Taxonomy from the datatype registry for extension taxonomy. galaxy.datatypes.registry DEBUG 2024-02-23 13:08:02,136 [pN:main,p:73244,tN:MainThread] Retrieved datatype module galaxy.datatypes.tabular:Tabular from the datatype registry for extension tabular. galaxy.datatypes.registry DEBUG 2024-02-23 13:08:02,137 [pN:main,p:73244,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:TwoBit from the datatype registry for extension twobit. galaxy.datatypes.registry DEBUG 2024-02-23 13:08:02,137 [pN:main,p:73244,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:SQmass from the datatype registry for extension sqmass. galaxy.datatypes.registry DEBUG 2024-02-23 13:08:02,137 [pN:main,p:73244,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:GeminiSQLite from the datatype registry for extension gemini.sqlite. galaxy.datatypes.registry DEBUG 2024-02-23 13:08:02,137 [pN:main,p:73244,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:ChiraSQLite from the datatype registry for extension chira.sqlite. galaxy.datatypes.registry DEBUG 2024-02-23 13:08:02,137 [pN:main,p:73244,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:CuffDiffSQlite from the datatype registry for extension cuffdiff.sqlite. galaxy.datatypes.registry DEBUG 2024-02-23 13:08:02,137 [pN:main,p:73244,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:GAFASQLite from the datatype registry for extension gafa.sqlite. galaxy.datatypes.registry DEBUG 2024-02-23 13:08:02,137 [pN:main,p:73244,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:NcbiTaxonomySQlite from the datatype registry for extension ncbitaxonomy.sqlite. galaxy.datatypes.registry DEBUG 2024-02-23 13:08:02,137 [pN:main,p:73244,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension txt. galaxy.datatypes.registry DEBUG 2024-02-23 13:08:02,137 [pN:main,p:73244,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:LineCount from the datatype registry for extension linecount. galaxy.datatypes.registry DEBUG 2024-02-23 13:08:02,137 [pN:main,p:73244,tN:MainThread] Retrieved datatype module galaxy.datatypes.sequence:MemePsp from the datatype registry for extension memepsp. galaxy.datatypes.registry DEBUG 2024-02-23 13:08:02,138 [pN:main,p:73244,tN:MainThread] Retrieved datatype module galaxy.datatypes.xml:MEMEXml from the datatype registry for extension memexml. galaxy.datatypes.registry DEBUG 2024-02-23 13:08:02,138 [pN:main,p:73244,tN:MainThread] Retrieved datatype module galaxy.datatypes.xml:CisML from the datatype registry for extension cisml. galaxy.datatypes.registry DEBUG 2024-02-23 13:08:02,138 [pN:main,p:73244,tN:MainThread] Retrieved datatype module galaxy.datatypes.xml:GenericXml from the datatype registry for extension xml. galaxy.datatypes.registry DEBUG 2024-02-23 13:08:02,138 [pN:main,p:73244,tN:MainThread] Retrieved datatype module galaxy.datatypes.xml:GenericXml from the datatype registry for extension xsd. galaxy.datatypes.registry DEBUG 2024-02-23 13:08:02,138 [pN:main,p:73244,tN:MainThread] Retrieved datatype module galaxy.datatypes.xml:Dzi from the datatype registry for extension dzi. galaxy.datatypes.registry DEBUG 2024-02-23 13:08:02,138 [pN:main,p:73244,tN:MainThread] Retrieved datatype module galaxy.datatypes.tabular:Vcf from the datatype registry for extension vcf. galaxy.datatypes.registry DEBUG 2024-02-23 13:08:02,138 [pN:main,p:73244,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:Bcf from the datatype registry for extension bcf. galaxy.datatypes.registry DEBUG 2024-02-23 13:08:02,138 [pN:main,p:73244,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:Bcf from the datatype registry for extension bcf_bgzip. galaxy.datatypes.registry DEBUG 2024-02-23 13:08:02,139 [pN:main,p:73244,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:BcfUncompressed from the datatype registry for extension bcf_uncompressed. galaxy.datatypes.registry DEBUG 2024-02-23 13:08:02,140 [pN:main,p:73244,tN:MainThread] Retrieved datatype module galaxy.datatypes.assembly:Velvet from the datatype registry for extension velvet. galaxy.datatypes.registry DEBUG 2024-02-23 13:08:02,140 [pN:main,p:73244,tN:MainThread] Retrieved datatype module galaxy.datatypes.interval:Wiggle from the datatype registry for extension wig. galaxy.datatypes.registry DEBUG 2024-02-23 13:08:02,140 [pN:main,p:73244,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:Binary from the datatype registry for extension interval_index. galaxy.datatypes.registry DEBUG 2024-02-23 13:08:02,140 [pN:main,p:73244,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:Binary from the datatype registry for extension odgi. galaxy.datatypes.registry DEBUG 2024-02-23 13:08:02,140 [pN:main,p:73244,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:CompressedArchive from the datatype registry for extension vg. galaxy.datatypes.registry DEBUG 2024-02-23 13:08:02,140 [pN:main,p:73244,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:Binary from the datatype registry for extension xg. galaxy.datatypes.registry DEBUG 2024-02-23 13:08:02,140 [pN:main,p:73244,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:Binary from the datatype registry for extension protobuf2. galaxy.datatypes.registry DEBUG 2024-02-23 13:08:02,140 [pN:main,p:73244,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:Binary from the datatype registry for extension protobuf3. galaxy.datatypes.registry DEBUG 2024-02-23 13:08:02,141 [pN:main,p:73244,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:Binary from the datatype registry for extension onnx. galaxy.datatypes.registry DEBUG 2024-02-23 13:08:02,141 [pN:main,p:73244,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:Binary from the datatype registry for extension tabix. galaxy.datatypes.registry DEBUG 2024-02-23 13:08:02,141 [pN:main,p:73244,tN:MainThread] Retrieved datatype module galaxy.datatypes.interval:IntervalTabix from the datatype registry for extension interval_tabix.gz. galaxy.datatypes.registry DEBUG 2024-02-23 13:08:02,141 [pN:main,p:73244,tN:MainThread] Retrieved datatype module galaxy.datatypes.interval:JuicerMediumTabix from the datatype registry for extension juicer_medium_tabix.gz. galaxy.datatypes.registry DEBUG 2024-02-23 13:08:02,141 [pN:main,p:73244,tN:MainThread] Retrieved datatype module galaxy.datatypes.interval:BedTabix from the datatype registry for extension bed_tabix.gz. galaxy.datatypes.registry DEBUG 2024-02-23 13:08:02,141 [pN:main,p:73244,tN:MainThread] Retrieved datatype module galaxy.datatypes.interval:GffTabix from the datatype registry for extension gff_tabix.gz. galaxy.datatypes.registry DEBUG 2024-02-23 13:08:02,141 [pN:main,p:73244,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:Binary from the datatype registry for extension bgzip. galaxy.datatypes.registry DEBUG 2024-02-23 13:08:02,141 [pN:main,p:73244,tN:MainThread] Retrieved datatype module galaxy.datatypes.tabular:VcfGz from the datatype registry for extension vcf_bgzip. galaxy.datatypes.registry DEBUG 2024-02-23 13:08:02,142 [pN:main,p:73244,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:Binary from the datatype registry for extension bus. galaxy.datatypes.registry DEBUG 2024-02-23 13:08:02,142 [pN:main,p:73244,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:Binary from the datatype registry for extension kallisto.idx. galaxy.datatypes.registry DEBUG 2024-02-23 13:08:02,142 [pN:main,p:73244,tN:MainThread] Retrieved datatype module galaxy.datatypes.xml:Phyloxml from the datatype registry for extension phyloxml. galaxy.datatypes.registry DEBUG 2024-02-23 13:08:02,142 [pN:main,p:73244,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:Newick from the datatype registry for extension newick. galaxy.datatypes.registry DEBUG 2024-02-23 13:08:02,142 [pN:main,p:73244,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:Newick from the datatype registry for extension nhx. galaxy.datatypes.registry DEBUG 2024-02-23 13:08:02,142 [pN:main,p:73244,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:Nexus from the datatype registry for extension nex. galaxy.datatypes.registry DEBUG 2024-02-23 13:08:02,142 [pN:main,p:73244,tN:MainThread] Retrieved datatype module galaxy.datatypes.text:IQTree from the datatype registry for extension iqtree. galaxy.datatypes.registry DEBUG 2024-02-23 13:08:02,144 [pN:main,p:73244,tN:MainThread] Retrieved datatype module galaxy.datatypes.mothur:SquareDistanceMatrix from the datatype registry for extension mldist. galaxy.datatypes.registry DEBUG 2024-02-23 13:08:02,146 [pN:main,p:73244,tN:MainThread] Retrieved datatype module galaxy.datatypes.genetics:Affybatch from the datatype registry for extension affybatch. galaxy.datatypes.registry DEBUG 2024-02-23 13:08:02,147 [pN:main,p:73244,tN:MainThread] Retrieved datatype module galaxy.datatypes.genetics:Eigenstratgeno from the datatype registry for extension eigenstratgeno. galaxy.datatypes.registry DEBUG 2024-02-23 13:08:02,147 [pN:main,p:73244,tN:MainThread] Retrieved datatype module galaxy.datatypes.genetics:Eigenstratpca from the datatype registry for extension eigenstratpca. galaxy.datatypes.registry DEBUG 2024-02-23 13:08:02,147 [pN:main,p:73244,tN:MainThread] Retrieved datatype module galaxy.datatypes.genetics:Eset from the datatype registry for extension eset. galaxy.datatypes.registry DEBUG 2024-02-23 13:08:02,147 [pN:main,p:73244,tN:MainThread] Retrieved datatype module galaxy.datatypes.genetics:Fped from the datatype registry for extension fped. galaxy.datatypes.registry DEBUG 2024-02-23 13:08:02,147 [pN:main,p:73244,tN:MainThread] Retrieved datatype module galaxy.datatypes.genetics:Fphe from the datatype registry for extension fphe. galaxy.datatypes.registry DEBUG 2024-02-23 13:08:02,147 [pN:main,p:73244,tN:MainThread] Retrieved datatype module galaxy.datatypes.genetics:GenomeGraphs from the datatype registry for extension gg. galaxy.datatypes.registry DEBUG 2024-02-23 13:08:02,147 [pN:main,p:73244,tN:MainThread] Retrieved datatype module galaxy.datatypes.genetics:ldIndep from the datatype registry for extension ldindep. galaxy.datatypes.registry DEBUG 2024-02-23 13:08:02,147 [pN:main,p:73244,tN:MainThread] Retrieved datatype module galaxy.datatypes.genetics:MAlist from the datatype registry for extension malist. galaxy.datatypes.registry DEBUG 2024-02-23 13:08:02,148 [pN:main,p:73244,tN:MainThread] Retrieved datatype module galaxy.datatypes.genetics:Lped from the datatype registry for extension lped. galaxy.datatypes.registry DEBUG 2024-02-23 13:08:02,148 [pN:main,p:73244,tN:MainThread] Retrieved datatype module galaxy.datatypes.genetics:Pbed from the datatype registry for extension pbed. galaxy.datatypes.registry DEBUG 2024-02-23 13:08:02,148 [pN:main,p:73244,tN:MainThread] Retrieved datatype module galaxy.datatypes.genetics:Pheno from the datatype registry for extension pheno. galaxy.datatypes.registry DEBUG 2024-02-23 13:08:02,148 [pN:main,p:73244,tN:MainThread] Retrieved datatype module galaxy.datatypes.genetics:Pphe from the datatype registry for extension pphe. galaxy.datatypes.registry DEBUG 2024-02-23 13:08:02,148 [pN:main,p:73244,tN:MainThread] Retrieved datatype module galaxy.datatypes.genetics:RexpBase from the datatype registry for extension rexpbase. galaxy.datatypes.registry DEBUG 2024-02-23 13:08:02,148 [pN:main,p:73244,tN:MainThread] Retrieved datatype module galaxy.datatypes.genetics:Rgenetics from the datatype registry for extension rgenetics. galaxy.datatypes.registry DEBUG 2024-02-23 13:08:02,148 [pN:main,p:73244,tN:MainThread] Retrieved datatype module galaxy.datatypes.genetics:Snptest from the datatype registry for extension snptest. galaxy.datatypes.registry DEBUG 2024-02-23 13:08:02,148 [pN:main,p:73244,tN:MainThread] Retrieved datatype module galaxy.datatypes.genetics:SNPMatrix from the datatype registry for extension snpmatrix. galaxy.datatypes.registry DEBUG 2024-02-23 13:08:02,148 [pN:main,p:73244,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:ExcelXls from the datatype registry for extension xls. galaxy.datatypes.registry DEBUG 2024-02-23 13:08:02,148 [pN:main,p:73244,tN:MainThread] Retrieved datatype module galaxy.datatypes.text:Ipynb from the datatype registry for extension ipynb. galaxy.datatypes.registry DEBUG 2024-02-23 13:08:02,148 [pN:main,p:73244,tN:MainThread] Retrieved datatype module galaxy.datatypes.text:Json from the datatype registry for extension json. galaxy.datatypes.registry DEBUG 2024-02-23 13:08:02,149 [pN:main,p:73244,tN:MainThread] Retrieved datatype module galaxy.datatypes.text:ExpressionJson from the datatype registry for extension expression.json. galaxy.datatypes.registry DEBUG 2024-02-23 13:08:02,149 [pN:main,p:73244,tN:MainThread] Retrieved datatype module galaxy.datatypes.graph:Xgmml from the datatype registry for extension xgmml. galaxy.datatypes.registry DEBUG 2024-02-23 13:08:02,150 [pN:main,p:73244,tN:MainThread] Retrieved datatype module galaxy.datatypes.graph:Sif from the datatype registry for extension sif. galaxy.datatypes.registry DEBUG 2024-02-23 13:08:02,151 [pN:main,p:73244,tN:MainThread] Retrieved datatype module galaxy.datatypes.triples:Triples from the datatype registry for extension triples. galaxy.datatypes.registry DEBUG 2024-02-23 13:08:02,151 [pN:main,p:73244,tN:MainThread] Retrieved datatype module galaxy.datatypes.triples:HDT from the datatype registry for extension hdt. galaxy.datatypes.registry DEBUG 2024-02-23 13:08:02,151 [pN:main,p:73244,tN:MainThread] Retrieved datatype module galaxy.datatypes.triples:NTriples from the datatype registry for extension nt. galaxy.datatypes.registry DEBUG 2024-02-23 13:08:02,151 [pN:main,p:73244,tN:MainThread] Retrieved datatype module galaxy.datatypes.triples:N3 from the datatype registry for extension n3. galaxy.datatypes.registry DEBUG 2024-02-23 13:08:02,151 [pN:main,p:73244,tN:MainThread] Retrieved datatype module galaxy.datatypes.triples:Turtle from the datatype registry for extension ttl. galaxy.datatypes.registry DEBUG 2024-02-23 13:08:02,151 [pN:main,p:73244,tN:MainThread] Retrieved datatype module galaxy.datatypes.triples:Rdf from the datatype registry for extension rdf. galaxy.datatypes.registry DEBUG 2024-02-23 13:08:02,151 [pN:main,p:73244,tN:MainThread] Retrieved datatype module galaxy.datatypes.triples:Jsonld from the datatype registry for extension jsonld. galaxy.datatypes.registry DEBUG 2024-02-23 13:08:02,151 [pN:main,p:73244,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:ExcelXls from the datatype registry for extension excel.xls. galaxy.datatypes.registry DEBUG 2024-02-23 13:08:02,151 [pN:main,p:73244,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:Xlsx from the datatype registry for extension xlsx. galaxy.datatypes.registry DEBUG 2024-02-23 13:08:02,151 [pN:main,p:73244,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:Binary from the datatype registry for extension docx. galaxy.datatypes.registry DEBUG 2024-02-23 13:08:02,152 [pN:main,p:73244,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension btwisted. galaxy.datatypes.registry DEBUG 2024-02-23 13:08:02,152 [pN:main,p:73244,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension cai. galaxy.datatypes.registry DEBUG 2024-02-23 13:08:02,152 [pN:main,p:73244,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension cat_db. galaxy.datatypes.registry DEBUG 2024-02-23 13:08:02,152 [pN:main,p:73244,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension charge. galaxy.datatypes.registry DEBUG 2024-02-23 13:08:02,152 [pN:main,p:73244,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension checktrans. galaxy.datatypes.registry DEBUG 2024-02-23 13:08:02,152 [pN:main,p:73244,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension chips. galaxy.datatypes.registry DEBUG 2024-02-23 13:08:02,152 [pN:main,p:73244,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension codcmp. galaxy.datatypes.registry DEBUG 2024-02-23 13:08:02,153 [pN:main,p:73244,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension coderet. galaxy.datatypes.registry DEBUG 2024-02-23 13:08:02,153 [pN:main,p:73244,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension compseq. galaxy.datatypes.registry DEBUG 2024-02-23 13:08:02,153 [pN:main,p:73244,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension cpgplot. galaxy.datatypes.registry DEBUG 2024-02-23 13:08:02,153 [pN:main,p:73244,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension cpgreport. galaxy.datatypes.registry DEBUG 2024-02-23 13:08:02,153 [pN:main,p:73244,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension cusp. galaxy.datatypes.registry DEBUG 2024-02-23 13:08:02,153 [pN:main,p:73244,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension cut. galaxy.datatypes.registry DEBUG 2024-02-23 13:08:02,153 [pN:main,p:73244,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension dan. galaxy.datatypes.registry DEBUG 2024-02-23 13:08:02,153 [pN:main,p:73244,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension digest. galaxy.datatypes.registry DEBUG 2024-02-23 13:08:02,153 [pN:main,p:73244,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension dreg. galaxy.datatypes.registry DEBUG 2024-02-23 13:08:02,154 [pN:main,p:73244,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension einverted. galaxy.datatypes.registry DEBUG 2024-02-23 13:08:02,154 [pN:main,p:73244,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension epestfind. galaxy.datatypes.registry DEBUG 2024-02-23 13:08:02,154 [pN:main,p:73244,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension equicktandem. galaxy.datatypes.registry DEBUG 2024-02-23 13:08:02,154 [pN:main,p:73244,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension est2genome. galaxy.datatypes.registry DEBUG 2024-02-23 13:08:02,154 [pN:main,p:73244,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension etandem. galaxy.datatypes.registry DEBUG 2024-02-23 13:08:02,154 [pN:main,p:73244,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension freak. galaxy.datatypes.registry DEBUG 2024-02-23 13:08:02,154 [pN:main,p:73244,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension fuzznuc. galaxy.datatypes.registry DEBUG 2024-02-23 13:08:02,154 [pN:main,p:73244,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension fuzzpro. galaxy.datatypes.registry DEBUG 2024-02-23 13:08:02,154 [pN:main,p:73244,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension fuzztran. galaxy.datatypes.registry DEBUG 2024-02-23 13:08:02,155 [pN:main,p:73244,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension garnier. galaxy.datatypes.registry DEBUG 2024-02-23 13:08:02,155 [pN:main,p:73244,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension geecee. galaxy.datatypes.registry DEBUG 2024-02-23 13:08:02,155 [pN:main,p:73244,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension helixturnhelix. galaxy.datatypes.registry DEBUG 2024-02-23 13:08:02,155 [pN:main,p:73244,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension hmoment. galaxy.datatypes.registry DEBUG 2024-02-23 13:08:02,155 [pN:main,p:73244,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension isochore. galaxy.datatypes.registry DEBUG 2024-02-23 13:08:02,155 [pN:main,p:73244,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension match. galaxy.datatypes.registry DEBUG 2024-02-23 13:08:02,155 [pN:main,p:73244,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension nametable. galaxy.datatypes.registry DEBUG 2024-02-23 13:08:02,155 [pN:main,p:73244,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension needle. galaxy.datatypes.registry DEBUG 2024-02-23 13:08:02,155 [pN:main,p:73244,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension newcpgreport. galaxy.datatypes.registry DEBUG 2024-02-23 13:08:02,155 [pN:main,p:73244,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension newcpgseek. galaxy.datatypes.registry DEBUG 2024-02-23 13:08:02,156 [pN:main,p:73244,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension noreturn. galaxy.datatypes.registry DEBUG 2024-02-23 13:08:02,156 [pN:main,p:73244,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension palindrome. galaxy.datatypes.registry DEBUG 2024-02-23 13:08:02,156 [pN:main,p:73244,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension pepcoil. galaxy.datatypes.registry DEBUG 2024-02-23 13:08:02,156 [pN:main,p:73244,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension pepinfo. galaxy.datatypes.registry DEBUG 2024-02-23 13:08:02,156 [pN:main,p:73244,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension pepstats. galaxy.datatypes.registry DEBUG 2024-02-23 13:08:02,156 [pN:main,p:73244,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension polydot. galaxy.datatypes.registry DEBUG 2024-02-23 13:08:02,156 [pN:main,p:73244,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension preg. galaxy.datatypes.registry DEBUG 2024-02-23 13:08:02,156 [pN:main,p:73244,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension prettyseq. galaxy.datatypes.registry DEBUG 2024-02-23 13:08:02,156 [pN:main,p:73244,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension primersearch. galaxy.datatypes.registry DEBUG 2024-02-23 13:08:02,157 [pN:main,p:73244,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension showfeat. galaxy.datatypes.registry DEBUG 2024-02-23 13:08:02,157 [pN:main,p:73244,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension showorf. galaxy.datatypes.registry DEBUG 2024-02-23 13:08:02,157 [pN:main,p:73244,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension sixpack. galaxy.datatypes.registry DEBUG 2024-02-23 13:08:02,157 [pN:main,p:73244,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension strider. galaxy.datatypes.registry DEBUG 2024-02-23 13:08:02,157 [pN:main,p:73244,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension supermatcher. galaxy.datatypes.registry DEBUG 2024-02-23 13:08:02,157 [pN:main,p:73244,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension syco. galaxy.datatypes.registry DEBUG 2024-02-23 13:08:02,157 [pN:main,p:73244,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension textsearch. galaxy.datatypes.registry DEBUG 2024-02-23 13:08:02,157 [pN:main,p:73244,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension vectorstrip. galaxy.datatypes.registry DEBUG 2024-02-23 13:08:02,158 [pN:main,p:73244,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension wobble. galaxy.datatypes.registry DEBUG 2024-02-23 13:08:02,158 [pN:main,p:73244,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension wordcount. galaxy.datatypes.registry DEBUG 2024-02-23 13:08:02,158 [pN:main,p:73244,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension dbmotif. galaxy.datatypes.registry DEBUG 2024-02-23 13:08:02,158 [pN:main,p:73244,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension diffseq. galaxy.datatypes.registry DEBUG 2024-02-23 13:08:02,158 [pN:main,p:73244,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension excel. galaxy.datatypes.registry DEBUG 2024-02-23 13:08:02,158 [pN:main,p:73244,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension feattable. galaxy.datatypes.registry DEBUG 2024-02-23 13:08:02,158 [pN:main,p:73244,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension motif. galaxy.datatypes.registry DEBUG 2024-02-23 13:08:02,158 [pN:main,p:73244,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension regions. galaxy.datatypes.registry DEBUG 2024-02-23 13:08:02,158 [pN:main,p:73244,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension seqtable. galaxy.datatypes.registry DEBUG 2024-02-23 13:08:02,158 [pN:main,p:73244,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension simple. galaxy.datatypes.registry DEBUG 2024-02-23 13:08:02,159 [pN:main,p:73244,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension table. galaxy.datatypes.registry DEBUG 2024-02-23 13:08:02,159 [pN:main,p:73244,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension tagseq. galaxy.datatypes.registry DEBUG 2024-02-23 13:08:02,159 [pN:main,p:73244,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension acedb. galaxy.datatypes.registry DEBUG 2024-02-23 13:08:02,159 [pN:main,p:73244,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension clustal. galaxy.datatypes.registry DEBUG 2024-02-23 13:08:02,159 [pN:main,p:73244,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension codata. galaxy.datatypes.registry DEBUG 2024-02-23 13:08:02,159 [pN:main,p:73244,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension embl. galaxy.datatypes.registry DEBUG 2024-02-23 13:08:02,159 [pN:main,p:73244,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension fitch. galaxy.datatypes.registry DEBUG 2024-02-23 13:08:02,159 [pN:main,p:73244,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension gcg. galaxy.datatypes.registry DEBUG 2024-02-23 13:08:02,159 [pN:main,p:73244,tN:MainThread] Retrieved datatype module galaxy.datatypes.sequence:Genbank from the datatype registry for extension genbank. galaxy.datatypes.registry DEBUG 2024-02-23 13:08:02,160 [pN:main,p:73244,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension hennig86. galaxy.datatypes.registry DEBUG 2024-02-23 13:08:02,160 [pN:main,p:73244,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension ig. galaxy.datatypes.registry DEBUG 2024-02-23 13:08:02,160 [pN:main,p:73244,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension jackknifer. galaxy.datatypes.registry DEBUG 2024-02-23 13:08:02,160 [pN:main,p:73244,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension jackknifernon. galaxy.datatypes.registry DEBUG 2024-02-23 13:08:02,160 [pN:main,p:73244,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension mega. galaxy.datatypes.registry DEBUG 2024-02-23 13:08:02,160 [pN:main,p:73244,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension meganon. galaxy.datatypes.registry DEBUG 2024-02-23 13:08:02,160 [pN:main,p:73244,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension ncbi. galaxy.datatypes.registry DEBUG 2024-02-23 13:08:02,160 [pN:main,p:73244,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension nexus. galaxy.datatypes.registry DEBUG 2024-02-23 13:08:02,161 [pN:main,p:73244,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension nexusnon. galaxy.datatypes.registry DEBUG 2024-02-23 13:08:02,161 [pN:main,p:73244,tN:MainThread] Retrieved datatype module galaxy.datatypes.phylip:Phylip from the datatype registry for extension phylip. galaxy.datatypes.registry DEBUG 2024-02-23 13:08:02,161 [pN:main,p:73244,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension phylipnon. galaxy.datatypes.registry DEBUG 2024-02-23 13:08:02,161 [pN:main,p:73244,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension pir. galaxy.datatypes.registry DEBUG 2024-02-23 13:08:02,161 [pN:main,p:73244,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension staden. galaxy.datatypes.registry DEBUG 2024-02-23 13:08:02,161 [pN:main,p:73244,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension swiss. galaxy.datatypes.registry DEBUG 2024-02-23 13:08:02,163 [pN:main,p:73244,tN:MainThread] Retrieved datatype module galaxy.datatypes.msa:Msf from the datatype registry for extension msf. galaxy.datatypes.registry DEBUG 2024-02-23 13:08:02,163 [pN:main,p:73244,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension markx0. galaxy.datatypes.registry DEBUG 2024-02-23 13:08:02,163 [pN:main,p:73244,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension markx1. galaxy.datatypes.registry DEBUG 2024-02-23 13:08:02,163 [pN:main,p:73244,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension markx10. galaxy.datatypes.registry DEBUG 2024-02-23 13:08:02,163 [pN:main,p:73244,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension markx2. galaxy.datatypes.registry DEBUG 2024-02-23 13:08:02,163 [pN:main,p:73244,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension markx3. galaxy.datatypes.registry DEBUG 2024-02-23 13:08:02,163 [pN:main,p:73244,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension pair. galaxy.datatypes.registry DEBUG 2024-02-23 13:08:02,163 [pN:main,p:73244,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension score. galaxy.datatypes.registry DEBUG 2024-02-23 13:08:02,164 [pN:main,p:73244,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension srs. galaxy.datatypes.registry DEBUG 2024-02-23 13:08:02,164 [pN:main,p:73244,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension srspair. galaxy.datatypes.registry DEBUG 2024-02-23 13:08:02,164 [pN:main,p:73244,tN:MainThread] Retrieved datatype module galaxy.datatypes.annotation:SnapHmm from the datatype registry for extension snaphmm. galaxy.datatypes.registry DEBUG 2024-02-23 13:08:02,164 [pN:main,p:73244,tN:MainThread] Retrieved datatype module galaxy.datatypes.annotation:Augustus from the datatype registry for extension augustus. galaxy.datatypes.registry DEBUG 2024-02-23 13:08:02,164 [pN:main,p:73244,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:ICM from the datatype registry for extension icm. galaxy.datatypes.registry DEBUG 2024-02-23 13:08:02,164 [pN:main,p:73244,tN:MainThread] Retrieved datatype module galaxy.datatypes.msa:InfernalCM from the datatype registry for extension cm. galaxy.datatypes.registry DEBUG 2024-02-23 13:08:02,164 [pN:main,p:73244,tN:MainThread] Retrieved datatype module galaxy.datatypes.msa:Hmmer2 from the datatype registry for extension hmm2. galaxy.datatypes.registry DEBUG 2024-02-23 13:08:02,165 [pN:main,p:73244,tN:MainThread] Retrieved datatype module galaxy.datatypes.msa:Hmmer3 from the datatype registry for extension hmm3. galaxy.datatypes.registry DEBUG 2024-02-23 13:08:02,165 [pN:main,p:73244,tN:MainThread] Retrieved datatype module galaxy.datatypes.msa:Stockholm_1_0 from the datatype registry for extension stockholm. galaxy.datatypes.registry DEBUG 2024-02-23 13:08:02,165 [pN:main,p:73244,tN:MainThread] Retrieved datatype module galaxy.datatypes.msa:MauveXmfa from the datatype registry for extension xmfa. galaxy.datatypes.registry DEBUG 2024-02-23 13:08:02,165 [pN:main,p:73244,tN:MainThread] Retrieved datatype module galaxy.datatypes.microarrays:Cel from the datatype registry for extension cel. galaxy.datatypes.registry DEBUG 2024-02-23 13:08:02,165 [pN:main,p:73244,tN:MainThread] Retrieved datatype module galaxy.datatypes.microarrays:Gpr from the datatype registry for extension gpr. galaxy.datatypes.registry DEBUG 2024-02-23 13:08:02,166 [pN:main,p:73244,tN:MainThread] Retrieved datatype module galaxy.datatypes.microarrays:Gal from the datatype registry for extension gal. galaxy.datatypes.registry DEBUG 2024-02-23 13:08:02,166 [pN:main,p:73244,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:RDS from the datatype registry for extension rds. galaxy.datatypes.registry DEBUG 2024-02-23 13:08:02,166 [pN:main,p:73244,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:RDS from the datatype registry for extension phyloseq. galaxy.datatypes.registry DEBUG 2024-02-23 13:08:02,166 [pN:main,p:73244,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:RData from the datatype registry for extension rdata. galaxy.datatypes.registry DEBUG 2024-02-23 13:08:02,166 [pN:main,p:73244,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:RData from the datatype registry for extension rdata.sce. galaxy.datatypes.registry DEBUG 2024-02-23 13:08:02,166 [pN:main,p:73244,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:RData from the datatype registry for extension rdata.xcms.raw. galaxy.datatypes.registry DEBUG 2024-02-23 13:08:02,166 [pN:main,p:73244,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:RData from the datatype registry for extension rdata.msnbase.raw. galaxy.datatypes.registry DEBUG 2024-02-23 13:08:02,166 [pN:main,p:73244,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:RData from the datatype registry for extension rdata.xcms.findchrompeaks. galaxy.datatypes.registry DEBUG 2024-02-23 13:08:02,167 [pN:main,p:73244,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:RData from the datatype registry for extension rdata.xcms.group. galaxy.datatypes.registry DEBUG 2024-02-23 13:08:02,167 [pN:main,p:73244,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:RData from the datatype registry for extension rdata.xcms.retcor. galaxy.datatypes.registry DEBUG 2024-02-23 13:08:02,167 [pN:main,p:73244,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:RData from the datatype registry for extension rdata.xcms.fillpeaks. galaxy.datatypes.registry DEBUG 2024-02-23 13:08:02,167 [pN:main,p:73244,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:RData from the datatype registry for extension rdata.camera.positive. galaxy.datatypes.registry DEBUG 2024-02-23 13:08:02,167 [pN:main,p:73244,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:RData from the datatype registry for extension rdata.camera.negative. galaxy.datatypes.registry DEBUG 2024-02-23 13:08:02,167 [pN:main,p:73244,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:RData from the datatype registry for extension rdata.camera.quick. galaxy.datatypes.registry DEBUG 2024-02-23 13:08:02,168 [pN:main,p:73244,tN:MainThread] Retrieved datatype module galaxy.datatypes.hdf5:HDF5SummarizedExperiment from the datatype registry for extension rdata.se. galaxy.datatypes.registry DEBUG 2024-02-23 13:08:02,168 [pN:main,p:73244,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:Binary from the datatype registry for extension rdock_as. galaxy.datatypes.registry DEBUG 2024-02-23 13:08:02,168 [pN:main,p:73244,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:OxliCountGraph from the datatype registry for extension oxlicg. galaxy.datatypes.registry DEBUG 2024-02-23 13:08:02,168 [pN:main,p:73244,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:OxliNodeGraph from the datatype registry for extension oxling. galaxy.datatypes.registry DEBUG 2024-02-23 13:08:02,168 [pN:main,p:73244,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:OxliTagSet from the datatype registry for extension oxlits. galaxy.datatypes.registry DEBUG 2024-02-23 13:08:02,168 [pN:main,p:73244,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:OxliStopTags from the datatype registry for extension oxlist. galaxy.datatypes.registry DEBUG 2024-02-23 13:08:02,168 [pN:main,p:73244,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:OxliSubset from the datatype registry for extension oxliss. galaxy.datatypes.registry DEBUG 2024-02-23 13:08:02,168 [pN:main,p:73244,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:OxliGraphLabels from the datatype registry for extension oxligl. galaxy.datatypes.registry DEBUG 2024-02-23 13:08:02,170 [pN:main,p:73244,tN:MainThread] Retrieved datatype module galaxy.datatypes.constructive_solid_geometry:STL from the datatype registry for extension stl. galaxy.datatypes.registry DEBUG 2024-02-23 13:08:02,170 [pN:main,p:73244,tN:MainThread] Retrieved datatype module galaxy.datatypes.constructive_solid_geometry:PlyAscii from the datatype registry for extension plyascii. galaxy.datatypes.registry DEBUG 2024-02-23 13:08:02,170 [pN:main,p:73244,tN:MainThread] Retrieved datatype module galaxy.datatypes.constructive_solid_geometry:PlyBinary from the datatype registry for extension plybinary. galaxy.datatypes.registry DEBUG 2024-02-23 13:08:02,170 [pN:main,p:73244,tN:MainThread] Retrieved datatype module galaxy.datatypes.constructive_solid_geometry:VtkAscii from the datatype registry for extension vtkascii. galaxy.datatypes.registry DEBUG 2024-02-23 13:08:02,170 [pN:main,p:73244,tN:MainThread] Retrieved datatype module galaxy.datatypes.constructive_solid_geometry:VtkBinary from the datatype registry for extension vtkbinary. galaxy.datatypes.registry DEBUG 2024-02-23 13:08:02,170 [pN:main,p:73244,tN:MainThread] Retrieved datatype module galaxy.datatypes.text:Biom1 from the datatype registry for extension biom1. galaxy.datatypes.registry DEBUG 2024-02-23 13:08:02,170 [pN:main,p:73244,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:Biom2 from the datatype registry for extension biom2. galaxy.datatypes.registry DEBUG 2024-02-23 13:08:02,170 [pN:main,p:73244,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:MashSketch from the datatype registry for extension msh. galaxy.datatypes.registry DEBUG 2024-02-23 13:08:02,171 [pN:main,p:73244,tN:MainThread] Retrieved datatype module galaxy.datatypes.interval:ScIdx from the datatype registry for extension scidx. galaxy.datatypes.registry DEBUG 2024-02-23 13:08:02,172 [pN:main,p:73244,tN:MainThread] Retrieved datatype module galaxy.datatypes.molecules:SMILES from the datatype registry for extension smi. galaxy.datatypes.registry DEBUG 2024-02-23 13:08:02,173 [pN:main,p:73244,tN:MainThread] Retrieved datatype module galaxy.datatypes.molecules:SDF from the datatype registry for extension sdf. galaxy.datatypes.registry DEBUG 2024-02-23 13:08:02,173 [pN:main,p:73244,tN:MainThread] Retrieved datatype module galaxy.datatypes.molecules:InChI from the datatype registry for extension inchi. galaxy.datatypes.registry DEBUG 2024-02-23 13:08:02,173 [pN:main,p:73244,tN:MainThread] Retrieved datatype module galaxy.datatypes.molecules:MOL from the datatype registry for extension mol. galaxy.datatypes.registry DEBUG 2024-02-23 13:08:02,173 [pN:main,p:73244,tN:MainThread] Retrieved datatype module galaxy.datatypes.molecules:MOL2 from the datatype registry for extension mol2. galaxy.datatypes.registry DEBUG 2024-02-23 13:08:02,173 [pN:main,p:73244,tN:MainThread] Retrieved datatype module galaxy.datatypes.molecules:CML from the datatype registry for extension cml. galaxy.datatypes.registry DEBUG 2024-02-23 13:08:02,173 [pN:main,p:73244,tN:MainThread] Retrieved datatype module galaxy.datatypes.molecules:FPS from the datatype registry for extension fps. galaxy.datatypes.registry DEBUG 2024-02-23 13:08:02,173 [pN:main,p:73244,tN:MainThread] Retrieved datatype module galaxy.datatypes.molecules:OBFS from the datatype registry for extension obfs. galaxy.datatypes.registry DEBUG 2024-02-23 13:08:02,173 [pN:main,p:73244,tN:MainThread] Retrieved datatype module galaxy.datatypes.molecules:DRF from the datatype registry for extension drf. galaxy.datatypes.registry DEBUG 2024-02-23 13:08:02,174 [pN:main,p:73244,tN:MainThread] Retrieved datatype module galaxy.datatypes.molecules:PHAR from the datatype registry for extension phar. galaxy.datatypes.registry DEBUG 2024-02-23 13:08:02,174 [pN:main,p:73244,tN:MainThread] Retrieved datatype module galaxy.datatypes.molecules:PDB from the datatype registry for extension pdb. galaxy.datatypes.registry DEBUG 2024-02-23 13:08:02,174 [pN:main,p:73244,tN:MainThread] Retrieved datatype module galaxy.datatypes.molecules:PDBQT from the datatype registry for extension pdbqt. galaxy.datatypes.registry DEBUG 2024-02-23 13:08:02,174 [pN:main,p:73244,tN:MainThread] Retrieved datatype module galaxy.datatypes.molecules:PQR from the datatype registry for extension pqr. galaxy.datatypes.registry DEBUG 2024-02-23 13:08:02,174 [pN:main,p:73244,tN:MainThread] Retrieved datatype module galaxy.datatypes.molecules:Cell from the datatype registry for extension cell. galaxy.datatypes.registry DEBUG 2024-02-23 13:08:02,174 [pN:main,p:73244,tN:MainThread] Retrieved datatype module galaxy.datatypes.molecules:CIF from the datatype registry for extension cif. galaxy.datatypes.registry DEBUG 2024-02-23 13:08:02,174 [pN:main,p:73244,tN:MainThread] Retrieved datatype module galaxy.datatypes.molecules:XYZ from the datatype registry for extension xyz. galaxy.datatypes.registry DEBUG 2024-02-23 13:08:02,174 [pN:main,p:73244,tN:MainThread] Retrieved datatype module galaxy.datatypes.molecules:ExtendedXYZ from the datatype registry for extension extxyz. galaxy.datatypes.registry DEBUG 2024-02-23 13:08:02,174 [pN:main,p:73244,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:Trr from the datatype registry for extension trr. galaxy.datatypes.registry DEBUG 2024-02-23 13:08:02,174 [pN:main,p:73244,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:Dcd from the datatype registry for extension dcd. galaxy.datatypes.registry DEBUG 2024-02-23 13:08:02,175 [pN:main,p:73244,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension top. galaxy.datatypes.registry DEBUG 2024-02-23 13:08:02,175 [pN:main,p:73244,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension prmtop. galaxy.datatypes.registry DEBUG 2024-02-23 13:08:02,175 [pN:main,p:73244,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension itp. galaxy.datatypes.registry DEBUG 2024-02-23 13:08:02,175 [pN:main,p:73244,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension mdp. galaxy.datatypes.registry DEBUG 2024-02-23 13:08:02,175 [pN:main,p:73244,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension ndx. galaxy.datatypes.registry DEBUG 2024-02-23 13:08:02,175 [pN:main,p:73244,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension xvg. galaxy.datatypes.registry DEBUG 2024-02-23 13:08:02,175 [pN:main,p:73244,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:Xtc from the datatype registry for extension xtc. galaxy.datatypes.registry DEBUG 2024-02-23 13:08:02,175 [pN:main,p:73244,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:Cpt from the datatype registry for extension cpt. galaxy.datatypes.registry DEBUG 2024-02-23 13:08:02,176 [pN:main,p:73244,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:Edr from the datatype registry for extension edr. galaxy.datatypes.registry DEBUG 2024-02-23 13:08:02,176 [pN:main,p:73244,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:Binary from the datatype registry for extension tpr. galaxy.datatypes.registry DEBUG 2024-02-23 13:08:02,176 [pN:main,p:73244,tN:MainThread] Retrieved datatype module galaxy.datatypes.molecules:GRO from the datatype registry for extension gro. galaxy.datatypes.registry DEBUG 2024-02-23 13:08:02,176 [pN:main,p:73244,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension inpcrd. galaxy.datatypes.registry DEBUG 2024-02-23 13:08:02,176 [pN:main,p:73244,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:Vel from the datatype registry for extension vel. galaxy.datatypes.registry DEBUG 2024-02-23 13:08:02,176 [pN:main,p:73244,tN:MainThread] Retrieved datatype module galaxy.datatypes.molecules:grd from the datatype registry for extension grd. galaxy.datatypes.registry DEBUG 2024-02-23 13:08:02,176 [pN:main,p:73244,tN:MainThread] Retrieved datatype module galaxy.datatypes.molecules:grdtgz from the datatype registry for extension grd.tgz. galaxy.datatypes.registry DEBUG 2024-02-23 13:08:02,176 [pN:main,p:73244,tN:MainThread] Retrieved datatype module galaxy.datatypes.mothur:Otu from the datatype registry for extension mothur.otu. galaxy.datatypes.registry DEBUG 2024-02-23 13:08:02,176 [pN:main,p:73244,tN:MainThread] Retrieved datatype module galaxy.datatypes.mothur:Otu from the datatype registry for extension mothur.list. galaxy.datatypes.registry DEBUG 2024-02-23 13:08:02,177 [pN:main,p:73244,tN:MainThread] Retrieved datatype module galaxy.datatypes.mothur:Sabund from the datatype registry for extension mothur.sabund. galaxy.datatypes.registry DEBUG 2024-02-23 13:08:02,177 [pN:main,p:73244,tN:MainThread] Retrieved datatype module galaxy.datatypes.mothur:Sabund from the datatype registry for extension mothur.rabund. galaxy.datatypes.registry DEBUG 2024-02-23 13:08:02,177 [pN:main,p:73244,tN:MainThread] Retrieved datatype module galaxy.datatypes.mothur:GroupAbund from the datatype registry for extension mothur.shared. galaxy.datatypes.registry DEBUG 2024-02-23 13:08:02,177 [pN:main,p:73244,tN:MainThread] Retrieved datatype module galaxy.datatypes.mothur:GroupAbund from the datatype registry for extension mothur.relabund. galaxy.datatypes.registry DEBUG 2024-02-23 13:08:02,177 [pN:main,p:73244,tN:MainThread] Retrieved datatype module galaxy.datatypes.mothur:Names from the datatype registry for extension mothur.names. galaxy.datatypes.registry DEBUG 2024-02-23 13:08:02,177 [pN:main,p:73244,tN:MainThread] Retrieved datatype module galaxy.datatypes.mothur:Group from the datatype registry for extension mothur.design. galaxy.datatypes.registry DEBUG 2024-02-23 13:08:02,177 [pN:main,p:73244,tN:MainThread] Retrieved datatype module galaxy.datatypes.mothur:Summary from the datatype registry for extension mothur.summary. galaxy.datatypes.registry DEBUG 2024-02-23 13:08:02,177 [pN:main,p:73244,tN:MainThread] Retrieved datatype module galaxy.datatypes.mothur:Group from the datatype registry for extension mothur.groups. galaxy.datatypes.registry DEBUG 2024-02-23 13:08:02,177 [pN:main,p:73244,tN:MainThread] Retrieved datatype module galaxy.datatypes.mothur:Oligos from the datatype registry for extension mothur.oligos. galaxy.datatypes.registry DEBUG 2024-02-23 13:08:02,178 [pN:main,p:73244,tN:MainThread] Retrieved datatype module galaxy.datatypes.sequence:Fasta from the datatype registry for extension mothur.align. galaxy.datatypes.registry DEBUG 2024-02-23 13:08:02,178 [pN:main,p:73244,tN:MainThread] Retrieved datatype module galaxy.datatypes.mothur:AccNos from the datatype registry for extension mothur.accnos. galaxy.datatypes.registry DEBUG 2024-02-23 13:08:02,178 [pN:main,p:73244,tN:MainThread] Retrieved datatype module galaxy.datatypes.mothur:AccNos from the datatype registry for extension mothur.otulabels. galaxy.datatypes.registry DEBUG 2024-02-23 13:08:02,178 [pN:main,p:73244,tN:MainThread] Retrieved datatype module galaxy.datatypes.tabular:Tabular from the datatype registry for extension mothur.otu.corr. galaxy.datatypes.registry DEBUG 2024-02-23 13:08:02,178 [pN:main,p:73244,tN:MainThread] Retrieved datatype module galaxy.datatypes.mothur:SecondaryStructureMap from the datatype registry for extension mothur.map. galaxy.datatypes.registry DEBUG 2024-02-23 13:08:02,178 [pN:main,p:73244,tN:MainThread] Retrieved datatype module galaxy.datatypes.mothur:AlignCheck from the datatype registry for extension mothur.align.check. galaxy.datatypes.registry DEBUG 2024-02-23 13:08:02,178 [pN:main,p:73244,tN:MainThread] Retrieved datatype module galaxy.datatypes.mothur:AlignReport from the datatype registry for extension mothur.align.report. galaxy.datatypes.registry DEBUG 2024-02-23 13:08:02,178 [pN:main,p:73244,tN:MainThread] Retrieved datatype module galaxy.datatypes.mothur:LaneMask from the datatype registry for extension mothur.filter. galaxy.datatypes.registry DEBUG 2024-02-23 13:08:02,178 [pN:main,p:73244,tN:MainThread] Retrieved datatype module galaxy.datatypes.mothur:DistanceMatrix from the datatype registry for extension mothur.dist. galaxy.datatypes.registry DEBUG 2024-02-23 13:08:02,179 [pN:main,p:73244,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension mothur.tre. galaxy.datatypes.registry DEBUG 2024-02-23 13:08:02,179 [pN:main,p:73244,tN:MainThread] Retrieved datatype module galaxy.datatypes.mothur:PairwiseDistanceMatrix from the datatype registry for extension mothur.pair.dist. galaxy.datatypes.registry DEBUG 2024-02-23 13:08:02,179 [pN:main,p:73244,tN:MainThread] Retrieved datatype module galaxy.datatypes.mothur:SquareDistanceMatrix from the datatype registry for extension mothur.square.dist. galaxy.datatypes.registry DEBUG 2024-02-23 13:08:02,179 [pN:main,p:73244,tN:MainThread] Retrieved datatype module galaxy.datatypes.mothur:LowerTriangleDistanceMatrix from the datatype registry for extension mothur.lower.dist. galaxy.datatypes.registry DEBUG 2024-02-23 13:08:02,179 [pN:main,p:73244,tN:MainThread] Retrieved datatype module galaxy.datatypes.mothur:RefTaxonomy from the datatype registry for extension mothur.ref.taxonomy. galaxy.datatypes.registry DEBUG 2024-02-23 13:08:02,179 [pN:main,p:73244,tN:MainThread] Retrieved datatype module galaxy.datatypes.mothur:RefTaxonomy from the datatype registry for extension mothur.seq.taxonomy. galaxy.datatypes.registry DEBUG 2024-02-23 13:08:02,179 [pN:main,p:73244,tN:MainThread] Retrieved datatype module galaxy.datatypes.mothur:RefTaxonomy from the datatype registry for extension mothur.rdp.taxonomy. galaxy.datatypes.registry DEBUG 2024-02-23 13:08:02,179 [pN:main,p:73244,tN:MainThread] Retrieved datatype module galaxy.datatypes.mothur:ConsensusTaxonomy from the datatype registry for extension mothur.cons.taxonomy. galaxy.datatypes.registry DEBUG 2024-02-23 13:08:02,179 [pN:main,p:73244,tN:MainThread] Retrieved datatype module galaxy.datatypes.mothur:TaxonomySummary from the datatype registry for extension mothur.tax.summary. galaxy.datatypes.registry DEBUG 2024-02-23 13:08:02,180 [pN:main,p:73244,tN:MainThread] Retrieved datatype module galaxy.datatypes.mothur:Frequency from the datatype registry for extension mothur.freq. galaxy.datatypes.registry DEBUG 2024-02-23 13:08:02,180 [pN:main,p:73244,tN:MainThread] Retrieved datatype module galaxy.datatypes.mothur:Quantile from the datatype registry for extension mothur.quan. galaxy.datatypes.registry DEBUG 2024-02-23 13:08:02,180 [pN:main,p:73244,tN:MainThread] Retrieved datatype module galaxy.datatypes.mothur:Quantile from the datatype registry for extension mothur.filtered.quan. galaxy.datatypes.registry DEBUG 2024-02-23 13:08:02,180 [pN:main,p:73244,tN:MainThread] Retrieved datatype module galaxy.datatypes.mothur:Quantile from the datatype registry for extension mothur.masked.quan. galaxy.datatypes.registry DEBUG 2024-02-23 13:08:02,180 [pN:main,p:73244,tN:MainThread] Retrieved datatype module galaxy.datatypes.mothur:Quantile from the datatype registry for extension mothur.filtered.masked.quan. galaxy.datatypes.registry DEBUG 2024-02-23 13:08:02,180 [pN:main,p:73244,tN:MainThread] Retrieved datatype module galaxy.datatypes.mothur:Axes from the datatype registry for extension mothur.axes. galaxy.datatypes.registry DEBUG 2024-02-23 13:08:02,180 [pN:main,p:73244,tN:MainThread] Retrieved datatype module galaxy.datatypes.mothur:SffFlow from the datatype registry for extension mothur.sff.flow. galaxy.datatypes.registry DEBUG 2024-02-23 13:08:02,180 [pN:main,p:73244,tN:MainThread] Retrieved datatype module galaxy.datatypes.mothur:CountTable from the datatype registry for extension mothur.count_table. galaxy.datatypes.registry DEBUG 2024-02-23 13:08:02,181 [pN:main,p:73244,tN:MainThread] Retrieved datatype module galaxy.datatypes.neo4j:Neo4jDB from the datatype registry for extension neostore. galaxy.datatypes.registry DEBUG 2024-02-23 13:08:02,181 [pN:main,p:73244,tN:MainThread] Retrieved datatype module galaxy.datatypes.neo4j:Neo4jDBzip from the datatype registry for extension neostore.zip. galaxy.datatypes.registry DEBUG 2024-02-23 13:08:02,181 [pN:main,p:73244,tN:MainThread] Retrieved datatype module galaxy.datatypes.tracks:UCSCTrackHub from the datatype registry for extension trackhub. galaxy.datatypes.registry DEBUG 2024-02-23 13:08:02,182 [pN:main,p:73244,tN:MainThread] Retrieved datatype module galaxy.datatypes.blast:BlastXml from the datatype registry for extension blastxml. galaxy.datatypes.registry DEBUG 2024-02-23 13:08:02,182 [pN:main,p:73244,tN:MainThread] Retrieved datatype module galaxy.datatypes.blast:BlastNucDb from the datatype registry for extension blastdbn. galaxy.datatypes.registry DEBUG 2024-02-23 13:08:02,182 [pN:main,p:73244,tN:MainThread] Retrieved datatype module galaxy.datatypes.blast:BlastProtDb from the datatype registry for extension blastdbp. galaxy.datatypes.registry DEBUG 2024-02-23 13:08:02,182 [pN:main,p:73244,tN:MainThread] Retrieved datatype module galaxy.datatypes.blast:BlastDomainDb from the datatype registry for extension blastdbd. galaxy.datatypes.registry DEBUG 2024-02-23 13:08:02,183 [pN:main,p:73244,tN:MainThread] Retrieved datatype module galaxy.datatypes.blast:LastDb from the datatype registry for extension lastdb. galaxy.datatypes.registry DEBUG 2024-02-23 13:08:02,183 [pN:main,p:73244,tN:MainThread] Retrieved datatype module galaxy.datatypes.blast:BlastNucDb5 from the datatype registry for extension blastdbn5. galaxy.datatypes.registry DEBUG 2024-02-23 13:08:02,183 [pN:main,p:73244,tN:MainThread] Retrieved datatype module galaxy.datatypes.blast:BlastProtDb5 from the datatype registry for extension blastdbp5. galaxy.datatypes.registry DEBUG 2024-02-23 13:08:02,183 [pN:main,p:73244,tN:MainThread] Retrieved datatype module galaxy.datatypes.blast:BlastDomainDb5 from the datatype registry for extension blastdbd5. galaxy.datatypes.registry DEBUG 2024-02-23 13:08:02,183 [pN:main,p:73244,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:GenericAsn1 from the datatype registry for extension maskinfo-asn1. galaxy.datatypes.registry DEBUG 2024-02-23 13:08:02,183 [pN:main,p:73244,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:GenericAsn1Binary from the datatype registry for extension maskinfo-asn1-binary. galaxy.datatypes.registry DEBUG 2024-02-23 13:08:02,183 [pN:main,p:73244,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:GenericAsn1 from the datatype registry for extension pssm-asn1. galaxy.datatypes.registry DEBUG 2024-02-23 13:08:02,184 [pN:main,p:73244,tN:MainThread] Retrieved datatype module galaxy.datatypes.plant_tribes:PlantTribesKsComponents from the datatype registry for extension ptkscmp. galaxy.datatypes.registry DEBUG 2024-02-23 13:08:02,184 [pN:main,p:73244,tN:MainThread] Retrieved datatype module galaxy.datatypes.plant_tribes:Smat from the datatype registry for extension smat. galaxy.datatypes.registry DEBUG 2024-02-23 13:08:02,184 [pN:main,p:73244,tN:MainThread] Retrieved datatype module galaxy.datatypes.genetics:GenotypeMatrix from the datatype registry for extension alohomora_gts. galaxy.datatypes.registry DEBUG 2024-02-23 13:08:02,184 [pN:main,p:73244,tN:MainThread] Retrieved datatype module galaxy.datatypes.tabular:Tabular from the datatype registry for extension alohomora_map. galaxy.datatypes.registry DEBUG 2024-02-23 13:08:02,184 [pN:main,p:73244,tN:MainThread] Retrieved datatype module galaxy.datatypes.tabular:Tabular from the datatype registry for extension alohomora_maf. galaxy.datatypes.registry DEBUG 2024-02-23 13:08:02,185 [pN:main,p:73244,tN:MainThread] Retrieved datatype module galaxy.datatypes.tabular:Tabular from the datatype registry for extension alohomora_ped. galaxy.datatypes.registry DEBUG 2024-02-23 13:08:02,185 [pN:main,p:73244,tN:MainThread] Retrieved datatype module galaxy.datatypes.tabular:Tabular from the datatype registry for extension linkage_pedin. galaxy.datatypes.registry DEBUG 2024-02-23 13:08:02,185 [pN:main,p:73244,tN:MainThread] Retrieved datatype module galaxy.datatypes.genetics:DataIn from the datatype registry for extension linkage_datain. galaxy.datatypes.registry DEBUG 2024-02-23 13:08:02,185 [pN:main,p:73244,tN:MainThread] Retrieved datatype module galaxy.datatypes.genetics:MarkerMap from the datatype registry for extension linkage_map. galaxy.datatypes.registry DEBUG 2024-02-23 13:08:02,185 [pN:main,p:73244,tN:MainThread] Retrieved datatype module galaxy.datatypes.tabular:Tabular from the datatype registry for extension allegro_ihaplo. galaxy.datatypes.registry DEBUG 2024-02-23 13:08:02,185 [pN:main,p:73244,tN:MainThread] Retrieved datatype module galaxy.datatypes.tabular:Tabular from the datatype registry for extension allegro_descent. galaxy.datatypes.registry DEBUG 2024-02-23 13:08:02,185 [pN:main,p:73244,tN:MainThread] Retrieved datatype module galaxy.datatypes.genetics:AllegroLOD from the datatype registry for extension allegro_fparam. galaxy.datatypes.registry DEBUG 2024-02-23 13:08:02,185 [pN:main,p:73244,tN:MainThread] Retrieved datatype module galaxy.datatypes.genetics:IdeasPre from the datatype registry for extension ideaspre. galaxy.datatypes.registry DEBUG 2024-02-23 13:08:02,185 [pN:main,p:73244,tN:MainThread] Retrieved datatype module galaxy.datatypes.xml:Sbml from the datatype registry for extension sbml. galaxy.datatypes.registry DEBUG 2024-02-23 13:08:02,187 [pN:main,p:73244,tN:MainThread] Retrieved datatype module galaxy.datatypes.spaln:SpalnNuclDb from the datatype registry for extension spalndbnp. galaxy.datatypes.registry DEBUG 2024-02-23 13:08:02,187 [pN:main,p:73244,tN:MainThread] Retrieved datatype module galaxy.datatypes.spaln:SpalnProtDb from the datatype registry for extension spalndba. galaxy.datatypes.registry DEBUG 2024-02-23 13:08:02,187 [pN:main,p:73244,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:RDS from the datatype registry for extension dada2_dada. galaxy.datatypes.registry DEBUG 2024-02-23 13:08:02,187 [pN:main,p:73244,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:RDS from the datatype registry for extension dada2_errorrates. galaxy.datatypes.registry DEBUG 2024-02-23 13:08:02,188 [pN:main,p:73244,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:RDS from the datatype registry for extension dada2_mergepairs. galaxy.datatypes.registry DEBUG 2024-02-23 13:08:02,188 [pN:main,p:73244,tN:MainThread] Retrieved datatype module galaxy.datatypes.tabular:Tabular from the datatype registry for extension dada2_sequencetable. galaxy.datatypes.registry DEBUG 2024-02-23 13:08:02,188 [pN:main,p:73244,tN:MainThread] Retrieved datatype module galaxy.datatypes.tabular:Tabular from the datatype registry for extension dada2_uniques. galaxy.datatypes.registry DEBUG 2024-02-23 13:08:02,188 [pN:main,p:73244,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:RDS from the datatype registry for extension ampvis2. galaxy.datatypes.registry DEBUG 2024-02-23 13:08:02,188 [pN:main,p:73244,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:Binary from the datatype registry for extension ckpt. galaxy.datatypes.registry DEBUG 2024-02-23 13:08:02,188 [pN:main,p:73244,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:Binary from the datatype registry for extension tgz. galaxy.datatypes.registry DEBUG 2024-02-23 13:08:02,191 [pN:main,p:73244,tN:MainThread] Retrieved datatype module galaxy.datatypes.media:Wav from the datatype registry for extension wav. galaxy.datatypes.registry DEBUG 2024-02-23 13:08:02,191 [pN:main,p:73244,tN:MainThread] Retrieved datatype module galaxy.datatypes.media:Mp3 from the datatype registry for extension mp3. galaxy.datatypes.registry DEBUG 2024-02-23 13:08:02,191 [pN:main,p:73244,tN:MainThread] Retrieved datatype module galaxy.datatypes.media:Mkv from the datatype registry for extension mkv. galaxy.datatypes.registry DEBUG 2024-02-23 13:08:02,191 [pN:main,p:73244,tN:MainThread] Retrieved datatype module galaxy.datatypes.media:Mp4 from the datatype registry for extension mp4. galaxy.datatypes.registry DEBUG 2024-02-23 13:08:02,191 [pN:main,p:73244,tN:MainThread] Retrieved datatype module galaxy.datatypes.media:Flv from the datatype registry for extension flv. galaxy.datatypes.registry DEBUG 2024-02-23 13:08:02,191 [pN:main,p:73244,tN:MainThread] Retrieved datatype module galaxy.datatypes.media:Mpg from the datatype registry for extension mpg. galaxy.datatypes.registry DEBUG 2024-02-23 13:08:02,192 [pN:main,p:73244,tN:MainThread] Retrieved datatype module galaxy.datatypes.speech:TextGrid from the datatype registry for extension textgrid. galaxy.datatypes.registry DEBUG 2024-02-23 13:08:02,192 [pN:main,p:73244,tN:MainThread] Retrieved datatype module galaxy.datatypes.speech:BPF from the datatype registry for extension par. galaxy.datatypes.registry DEBUG 2024-02-23 13:08:02,192 [pN:main,p:73244,tN:MainThread] Retrieved datatype module galaxy.datatypes.tabular:Tabular from the datatype registry for extension ffindex. galaxy.datatypes.registry DEBUG 2024-02-23 13:08:02,192 [pN:main,p:73244,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:Data from the datatype registry for extension ffdata. galaxy.datatypes.registry DEBUG 2024-02-23 13:08:02,192 [pN:main,p:73244,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:Pretext from the datatype registry for extension pretext. galaxy.datatypes.registry DEBUG 2024-02-23 13:08:02,192 [pN:main,p:73244,tN:MainThread] Retrieved datatype module galaxy.datatypes.text:Html from the datatype registry for extension immuneml_receptors.html. galaxy.datatypes.registry DEBUG 2024-02-23 13:08:02,192 [pN:main,p:73244,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:HexrdMaterials from the datatype registry for extension hexrd.materials.h5. galaxy.datatypes.registry DEBUG 2024-02-23 13:08:02,192 [pN:main,p:73244,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:Npz from the datatype registry for extension npz. galaxy.datatypes.registry DEBUG 2024-02-23 13:08:02,192 [pN:main,p:73244,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:HexrdImagesNpz from the datatype registry for extension hexrd.images.npz. galaxy.datatypes.registry DEBUG 2024-02-23 13:08:02,193 [pN:main,p:73244,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:HexrdEtaOmeNpz from the datatype registry for extension hexrd.eta_ome.npz. galaxy.datatypes.registry DEBUG 2024-02-23 13:08:02,193 [pN:main,p:73244,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:Npz from the datatype registry for extension hexrd.scored_orientations.npz. galaxy.datatypes.registry DEBUG 2024-02-23 13:08:02,193 [pN:main,p:73244,tN:MainThread] Retrieved datatype module galaxy.datatypes.tabular:Tabular from the datatype registry for extension hexrd.accepted_orientations. galaxy.datatypes.registry DEBUG 2024-02-23 13:08:02,193 [pN:main,p:73244,tN:MainThread] Retrieved datatype module galaxy.datatypes.text:Yaml from the datatype registry for extension hexrd.yml. galaxy.datatypes.registry DEBUG 2024-02-23 13:08:02,193 [pN:main,p:73244,tN:MainThread] Retrieved datatype module galaxy.datatypes.constructive_solid_geometry:NeperTess from the datatype registry for extension neper.tess. galaxy.datatypes.registry DEBUG 2024-02-23 13:08:02,193 [pN:main,p:73244,tN:MainThread] Retrieved datatype module galaxy.datatypes.constructive_solid_geometry:NeperTesr from the datatype registry for extension neper.tesr. galaxy.datatypes.registry DEBUG 2024-02-23 13:08:02,193 [pN:main,p:73244,tN:MainThread] Retrieved datatype module galaxy.datatypes.constructive_solid_geometry:NeperPoints from the datatype registry for extension neper.points. galaxy.datatypes.registry DEBUG 2024-02-23 13:08:02,193 [pN:main,p:73244,tN:MainThread] Retrieved datatype module galaxy.datatypes.constructive_solid_geometry:NeperPointsTabular from the datatype registry for extension neper.points.tsv. galaxy.datatypes.registry DEBUG 2024-02-23 13:08:02,193 [pN:main,p:73244,tN:MainThread] Retrieved datatype module galaxy.datatypes.constructive_solid_geometry:NeperMultiScaleCell from the datatype registry for extension neper.mscell. galaxy.datatypes.registry DEBUG 2024-02-23 13:08:02,194 [pN:main,p:73244,tN:MainThread] Retrieved datatype module galaxy.datatypes.constructive_solid_geometry:GmshMsh from the datatype registry for extension gmsh.msh. galaxy.datatypes.registry DEBUG 2024-02-23 13:08:02,194 [pN:main,p:73244,tN:MainThread] Retrieved datatype module galaxy.datatypes.constructive_solid_geometry:GmshGeo from the datatype registry for extension gmsh.geo. galaxy.datatypes.registry DEBUG 2024-02-23 13:08:02,194 [pN:main,p:73244,tN:MainThread] Retrieved datatype module galaxy.datatypes.constructive_solid_geometry:ZsetGeof from the datatype registry for extension zset.geof. galaxy.datatypes.registry DEBUG 2024-02-23 13:08:02,194 [pN:main,p:73244,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:Binary from the datatype registry for extension stl. galaxy.datatypes.registry DEBUG 2024-02-23 13:08:02,194 [pN:main,p:73244,tN:MainThread] Overriding conflicting datatype with extension 'stl', using datatype from /scratch/rico/galaxy/lib/galaxy/config/sample/datatypes_conf.xml.sample. galaxy.datatypes.registry DEBUG 2024-02-23 13:08:02,194 [pN:main,p:73244,tN:MainThread] Retrieved datatype module galaxy.datatypes.text:Text from the datatype registry for extension pov. galaxy.datatypes.registry DEBUG 2024-02-23 13:08:02,194 [pN:main,p:73244,tN:MainThread] Retrieved datatype module galaxy.datatypes.text:PithyaResult from the datatype registry for extension pithya.result. galaxy.datatypes.registry DEBUG 2024-02-23 13:08:02,194 [pN:main,p:73244,tN:MainThread] Retrieved datatype module galaxy.datatypes.text:PithyaProperty from the datatype registry for extension pithya.property. galaxy.datatypes.registry DEBUG 2024-02-23 13:08:02,194 [pN:main,p:73244,tN:MainThread] Retrieved datatype module galaxy.datatypes.text:PithyaModel from the datatype registry for extension pithya.model. galaxy.datatypes.registry DEBUG 2024-02-23 13:08:02,194 [pN:main,p:73244,tN:MainThread] Retrieved datatype module galaxy.datatypes.text:BCSLts from the datatype registry for extension bcsl.ts. galaxy.datatypes.registry DEBUG 2024-02-23 13:08:02,194 [pN:main,p:73244,tN:MainThread] Retrieved datatype module galaxy.datatypes.text:BCSLmodel from the datatype registry for extension bcsl.model. galaxy.datatypes.registry DEBUG 2024-02-23 13:08:02,195 [pN:main,p:73244,tN:MainThread] Retrieved datatype module galaxy.datatypes.text:StormSample from the datatype registry for extension storm.sample. galaxy.datatypes.registry DEBUG 2024-02-23 13:08:02,195 [pN:main,p:73244,tN:MainThread] Retrieved datatype module galaxy.datatypes.text:StormCheck from the datatype registry for extension storm.check. galaxy.datatypes.registry DEBUG 2024-02-23 13:08:02,195 [pN:main,p:73244,tN:MainThread] Retrieved datatype module galaxy.datatypes.text:CTLresult from the datatype registry for extension ctl.result. galaxy.datatypes.registry DEBUG 2024-02-23 13:08:02,195 [pN:main,p:73244,tN:MainThread] Retrieved datatype module galaxy.datatypes.text:Castep from the datatype registry for extension castep. galaxy.datatypes.registry DEBUG 2024-02-23 13:08:02,195 [pN:main,p:73244,tN:MainThread] Retrieved datatype module galaxy.datatypes.text:Param from the datatype registry for extension param. galaxy.datatypes.registry DEBUG 2024-02-23 13:08:02,195 [pN:main,p:73244,tN:MainThread] Retrieved datatype module galaxy.datatypes.text:FormattedDensity from the datatype registry for extension den_fmt. galaxy.datatypes.registry DEBUG 2024-02-23 13:08:02,196 [pN:main,p:73244,tN:MainThread] Retrieved datatype module galaxy.datatypes.larch:AthenaProject from the datatype registry for extension prj. galaxy.datatypes.registry DEBUG 2024-02-23 13:08:02,196 [pN:main,p:73244,tN:MainThread] Retrieved datatype module galaxy.datatypes.larch:FEFFInput from the datatype registry for extension inp. galaxy.datatypes.registry DEBUG 2024-02-23 13:08:02,196 [pN:main,p:73244,tN:MainThread] Retrieved datatype module galaxy.datatypes.tabular:CSV from the datatype registry for extension sp. galaxy.datatypes.registry DEBUG 2024-02-23 13:08:02,196 [pN:main,p:73244,tN:MainThread] Retrieved datatype module galaxy.datatypes.tabular:CSV from the datatype registry for extension gds. galaxy.datatypes.registry DEBUG 2024-02-23 13:08:02,196 [pN:main,p:73244,tN:MainThread] Retrieved datatype module galaxy.datatypes.tabular:CSV from the datatype registry for extension feff. galaxy.datatypes.registry DEBUG 2024-02-23 13:08:02,196 [pN:main,p:73244,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension feffit. galaxy.datatypes.registry DEBUG 2024-02-23 13:08:02,196 [pN:main,p:73244,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:Binary from the datatype registry for extension bil. galaxy.datatypes.registry DEBUG 2024-02-23 13:08:02,197 [pN:main,p:73244,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension hdr. galaxy.datatypes.registry DEBUG 2024-02-23 13:08:02,197 [pN:main,p:73244,tN:MainThread] Retrieved datatype module galaxy.datatypes.gis:Shapefile from the datatype registry for extension shp. galaxy.datatypes.registry DEBUG 2024-02-23 13:08:02,197 [pN:main,p:73244,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:FITS from the datatype registry for extension fits. galaxy.datatypes.registry DEBUG 2024-02-23 13:08:02,197 [pN:main,p:73244,tN:MainThread] Retrieved datatype module galaxy.datatypes.chain:Chain from the datatype registry for extension chain. galaxy.datatypes.registry DEBUG 2024-02-23 13:08:02,198 [pN:main,p:73244,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.plant_tribes:PlantTribesKsComponents' galaxy.datatypes.registry DEBUG 2024-02-23 13:08:02,198 [pN:main,p:73244,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.plant_tribes:Smat' galaxy.datatypes.registry DEBUG 2024-02-23 13:08:02,198 [pN:main,p:73244,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.mothur:Sabund' galaxy.datatypes.registry DEBUG 2024-02-23 13:08:02,198 [pN:main,p:73244,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.mothur:Otu' galaxy.datatypes.registry DEBUG 2024-02-23 13:08:02,198 [pN:main,p:73244,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.mothur:GroupAbund' galaxy.datatypes.registry DEBUG 2024-02-23 13:08:02,198 [pN:main,p:73244,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.mothur:SecondaryStructureMap' galaxy.datatypes.registry DEBUG 2024-02-23 13:08:02,198 [pN:main,p:73244,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.mothur:LowerTriangleDistanceMatrix' galaxy.datatypes.registry DEBUG 2024-02-23 13:08:02,198 [pN:main,p:73244,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.mothur:SquareDistanceMatrix' galaxy.datatypes.registry DEBUG 2024-02-23 13:08:02,198 [pN:main,p:73244,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.mothur:PairwiseDistanceMatrix' galaxy.datatypes.registry DEBUG 2024-02-23 13:08:02,198 [pN:main,p:73244,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.mothur:Oligos' galaxy.datatypes.registry DEBUG 2024-02-23 13:08:02,198 [pN:main,p:73244,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.mothur:Quantile' galaxy.datatypes.registry DEBUG 2024-02-23 13:08:02,198 [pN:main,p:73244,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.mothur:Frequency' galaxy.datatypes.registry DEBUG 2024-02-23 13:08:02,199 [pN:main,p:73244,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.mothur:LaneMask' galaxy.datatypes.registry DEBUG 2024-02-23 13:08:02,199 [pN:main,p:73244,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.mothur:RefTaxonomy' galaxy.datatypes.registry DEBUG 2024-02-23 13:08:02,199 [pN:main,p:73244,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.mothur:Axes' galaxy.datatypes.registry DEBUG 2024-02-23 13:08:02,199 [pN:main,p:73244,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.constructive_solid_geometry:PlyAscii' galaxy.datatypes.registry DEBUG 2024-02-23 13:08:02,199 [pN:main,p:73244,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.constructive_solid_geometry:PlyBinary' galaxy.datatypes.registry DEBUG 2024-02-23 13:08:02,199 [pN:main,p:73244,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.constructive_solid_geometry:VtkAscii' galaxy.datatypes.registry DEBUG 2024-02-23 13:08:02,199 [pN:main,p:73244,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.constructive_solid_geometry:VtkBinary' galaxy.datatypes.registry DEBUG 2024-02-23 13:08:02,199 [pN:main,p:73244,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.constructive_solid_geometry:NeperTess' galaxy.datatypes.registry DEBUG 2024-02-23 13:08:02,199 [pN:main,p:73244,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.constructive_solid_geometry:NeperTesr' galaxy.datatypes.registry DEBUG 2024-02-23 13:08:02,199 [pN:main,p:73244,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.constructive_solid_geometry:GmshMsh' galaxy.datatypes.registry DEBUG 2024-02-23 13:08:02,199 [pN:main,p:73244,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.goldenpath:GoldenPath' galaxy.datatypes.registry DEBUG 2024-02-23 13:08:02,199 [pN:main,p:73244,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.interval:ScIdx' galaxy.datatypes.registry DEBUG 2024-02-23 13:08:02,199 [pN:main,p:73244,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.tabular:Vcf' galaxy.datatypes.registry DEBUG 2024-02-23 13:08:02,199 [pN:main,p:73244,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.binary:JP2' galaxy.datatypes.registry DEBUG 2024-02-23 13:08:02,199 [pN:main,p:73244,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.binary:TwoBit' galaxy.datatypes.registry DEBUG 2024-02-23 13:08:02,199 [pN:main,p:73244,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.binary:GeminiSQLite' galaxy.datatypes.registry DEBUG 2024-02-23 13:08:02,199 [pN:main,p:73244,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.binary:SQmass' galaxy.datatypes.registry DEBUG 2024-02-23 13:08:02,199 [pN:main,p:73244,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.binary:MzSQlite' galaxy.datatypes.registry DEBUG 2024-02-23 13:08:02,200 [pN:main,p:73244,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.binary:OSW' galaxy.datatypes.registry DEBUG 2024-02-23 13:08:02,200 [pN:main,p:73244,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.binary:PQP' galaxy.datatypes.registry DEBUG 2024-02-23 13:08:02,200 [pN:main,p:73244,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.binary:IdpDB' galaxy.datatypes.registry DEBUG 2024-02-23 13:08:02,200 [pN:main,p:73244,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.binary:ElibSQlite' galaxy.datatypes.registry DEBUG 2024-02-23 13:08:02,200 [pN:main,p:73244,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.binary:DlibSQlite' galaxy.datatypes.registry DEBUG 2024-02-23 13:08:02,200 [pN:main,p:73244,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.binary:BlibSQlite' galaxy.datatypes.registry DEBUG 2024-02-23 13:08:02,200 [pN:main,p:73244,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.binary:ChiraSQLite' galaxy.datatypes.registry DEBUG 2024-02-23 13:08:02,200 [pN:main,p:73244,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.binary:CuffDiffSQlite' galaxy.datatypes.registry DEBUG 2024-02-23 13:08:02,200 [pN:main,p:73244,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.binary:GAFASQLite' galaxy.datatypes.registry DEBUG 2024-02-23 13:08:02,200 [pN:main,p:73244,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.binary:NcbiTaxonomySQlite' galaxy.datatypes.registry DEBUG 2024-02-23 13:08:02,200 [pN:main,p:73244,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.binary:SQlite' galaxy.datatypes.registry DEBUG 2024-02-23 13:08:02,200 [pN:main,p:73244,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.binary:H5MLM' galaxy.datatypes.registry DEBUG 2024-02-23 13:08:02,200 [pN:main,p:73244,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.binary:Cool' galaxy.datatypes.registry DEBUG 2024-02-23 13:08:02,200 [pN:main,p:73244,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.binary:MCool' galaxy.datatypes.registry DEBUG 2024-02-23 13:08:02,200 [pN:main,p:73244,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.binary:Loom' galaxy.datatypes.registry DEBUG 2024-02-23 13:08:02,200 [pN:main,p:73244,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.binary:Anndata' galaxy.datatypes.registry DEBUG 2024-02-23 13:08:02,200 [pN:main,p:73244,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.binary:Biom2' galaxy.datatypes.registry DEBUG 2024-02-23 13:08:02,200 [pN:main,p:73244,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.binary:HexrdMaterials' galaxy.datatypes.registry DEBUG 2024-02-23 13:08:02,201 [pN:main,p:73244,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.binary:H5' galaxy.datatypes.registry DEBUG 2024-02-23 13:08:02,201 [pN:main,p:73244,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.binary:Grib' galaxy.datatypes.registry DEBUG 2024-02-23 13:08:02,201 [pN:main,p:73244,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.binary:HexrdImagesNpz' galaxy.datatypes.registry DEBUG 2024-02-23 13:08:02,201 [pN:main,p:73244,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.binary:HexrdEtaOmeNpz' galaxy.datatypes.registry DEBUG 2024-02-23 13:08:02,201 [pN:main,p:73244,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.binary:Npz' galaxy.datatypes.registry DEBUG 2024-02-23 13:08:02,201 [pN:main,p:73244,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.binary:Bam' galaxy.datatypes.registry DEBUG 2024-02-23 13:08:02,201 [pN:main,p:73244,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.binary:BamQuerynameSorted' galaxy.datatypes.registry DEBUG 2024-02-23 13:08:02,201 [pN:main,p:73244,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.binary:BamNative' galaxy.datatypes.registry DEBUG 2024-02-23 13:08:02,201 [pN:main,p:73244,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.binary:CRAM' galaxy.datatypes.registry DEBUG 2024-02-23 13:08:02,201 [pN:main,p:73244,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.binary:Sff' galaxy.datatypes.registry DEBUG 2024-02-23 13:08:02,201 [pN:main,p:73244,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.binary:Sra' galaxy.datatypes.registry DEBUG 2024-02-23 13:08:02,201 [pN:main,p:73244,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.binary:NetCDF' galaxy.datatypes.registry DEBUG 2024-02-23 13:08:02,201 [pN:main,p:73244,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.binary:DAA' galaxy.datatypes.registry DEBUG 2024-02-23 13:08:02,201 [pN:main,p:73244,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.binary:RMA6' galaxy.datatypes.registry DEBUG 2024-02-23 13:08:02,201 [pN:main,p:73244,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.binary:DMND' galaxy.datatypes.registry DEBUG 2024-02-23 13:08:02,202 [pN:main,p:73244,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.binary:Parquet' galaxy.datatypes.registry DEBUG 2024-02-23 13:08:02,202 [pN:main,p:73244,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.binary:BafTar' galaxy.datatypes.registry DEBUG 2024-02-23 13:08:02,202 [pN:main,p:73244,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.binary:TdfTar' galaxy.datatypes.registry DEBUG 2024-02-23 13:08:02,202 [pN:main,p:73244,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.binary:MassHunterTar' galaxy.datatypes.registry DEBUG 2024-02-23 13:08:02,202 [pN:main,p:73244,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.binary:MassLynxTar' galaxy.datatypes.registry DEBUG 2024-02-23 13:08:02,202 [pN:main,p:73244,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.binary:YepTar' galaxy.datatypes.registry DEBUG 2024-02-23 13:08:02,202 [pN:main,p:73244,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.binary:WiffTar' galaxy.datatypes.registry DEBUG 2024-02-23 13:08:02,202 [pN:main,p:73244,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.binary:Fast5ArchiveGz' galaxy.datatypes.registry DEBUG 2024-02-23 13:08:02,202 [pN:main,p:73244,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.binary:Fast5ArchiveBz2' galaxy.datatypes.registry DEBUG 2024-02-23 13:08:02,202 [pN:main,p:73244,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.binary:Fast5Archive' galaxy.datatypes.registry DEBUG 2024-02-23 13:08:02,202 [pN:main,p:73244,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.binary:Meryldb' galaxy.datatypes.registry DEBUG 2024-02-23 13:08:02,202 [pN:main,p:73244,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.binary:Bref3' galaxy.datatypes.registry DEBUG 2024-02-23 13:08:02,202 [pN:main,p:73244,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.binary:PostgresqlArchive' galaxy.datatypes.registry DEBUG 2024-02-23 13:08:02,202 [pN:main,p:73244,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.binary:ICM' galaxy.datatypes.registry DEBUG 2024-02-23 13:08:02,202 [pN:main,p:73244,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.binary:Idat' galaxy.datatypes.registry DEBUG 2024-02-23 13:08:02,202 [pN:main,p:73244,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.binary:Trr' galaxy.datatypes.registry DEBUG 2024-02-23 13:08:02,202 [pN:main,p:73244,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.binary:Dcd' galaxy.datatypes.registry DEBUG 2024-02-23 13:08:02,203 [pN:main,p:73244,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.binary:Xtc' galaxy.datatypes.registry DEBUG 2024-02-23 13:08:02,203 [pN:main,p:73244,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.binary:Cpt' galaxy.datatypes.registry DEBUG 2024-02-23 13:08:02,203 [pN:main,p:73244,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.binary:Edr' galaxy.datatypes.registry DEBUG 2024-02-23 13:08:02,203 [pN:main,p:73244,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.binary:Vel' galaxy.datatypes.registry DEBUG 2024-02-23 13:08:02,203 [pN:main,p:73244,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.binary:Xlsx' galaxy.datatypes.registry DEBUG 2024-02-23 13:08:02,203 [pN:main,p:73244,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.qiime2:QIIME2Metadata' galaxy.datatypes.registry DEBUG 2024-02-23 13:08:02,203 [pN:main,p:73244,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.qiime2:QIIME2Artifact' galaxy.datatypes.registry DEBUG 2024-02-23 13:08:02,203 [pN:main,p:73244,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.qiime2:QIIME2Visualization' galaxy.datatypes.registry DEBUG 2024-02-23 13:08:02,203 [pN:main,p:73244,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.binary:CompressedZipArchive' galaxy.datatypes.registry DEBUG 2024-02-23 13:08:02,203 [pN:main,p:73244,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.binary:Pretext' galaxy.datatypes.registry DEBUG 2024-02-23 13:08:02,203 [pN:main,p:73244,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.annotation:Augustus' galaxy.datatypes.registry DEBUG 2024-02-23 13:08:02,203 [pN:main,p:73244,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.xml:Owl' galaxy.datatypes.registry DEBUG 2024-02-23 13:08:02,203 [pN:main,p:73244,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.chain:Chain' galaxy.datatypes.registry DEBUG 2024-02-23 13:08:02,203 [pN:main,p:73244,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.triples:Rdf' galaxy.datatypes.registry DEBUG 2024-02-23 13:08:02,203 [pN:main,p:73244,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.blast:BlastXml' galaxy.datatypes.registry DEBUG 2024-02-23 13:08:02,204 [pN:main,p:73244,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.images:Gifti' galaxy.datatypes.registry DEBUG 2024-02-23 13:08:02,204 [pN:main,p:73244,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.xml:Phyloxml' galaxy.datatypes.registry DEBUG 2024-02-23 13:08:02,204 [pN:main,p:73244,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.xml:Dzi' galaxy.datatypes.registry DEBUG 2024-02-23 13:08:02,204 [pN:main,p:73244,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.xml:Sbml' galaxy.datatypes.registry DEBUG 2024-02-23 13:08:02,204 [pN:main,p:73244,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.proteomics:Dta2d' galaxy.datatypes.registry DEBUG 2024-02-23 13:08:02,204 [pN:main,p:73244,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.proteomics:Edta' galaxy.datatypes.registry DEBUG 2024-02-23 13:08:02,204 [pN:main,p:73244,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.proteomics:ConsensusXML' galaxy.datatypes.registry DEBUG 2024-02-23 13:08:02,204 [pN:main,p:73244,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.proteomics:IdXML' galaxy.datatypes.registry DEBUG 2024-02-23 13:08:02,204 [pN:main,p:73244,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.proteomics:FeatureXML' galaxy.datatypes.registry DEBUG 2024-02-23 13:08:02,204 [pN:main,p:73244,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.proteomics:MascotXML' galaxy.datatypes.registry DEBUG 2024-02-23 13:08:02,204 [pN:main,p:73244,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.proteomics:Mgf' galaxy.datatypes.registry DEBUG 2024-02-23 13:08:02,204 [pN:main,p:73244,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.proteomics:Ms2' galaxy.datatypes.registry DEBUG 2024-02-23 13:08:02,204 [pN:main,p:73244,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.proteomics:Msp' galaxy.datatypes.registry DEBUG 2024-02-23 13:08:02,204 [pN:main,p:73244,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.proteomics:MzData' galaxy.datatypes.registry DEBUG 2024-02-23 13:08:02,204 [pN:main,p:73244,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.proteomics:MzIdentML' galaxy.datatypes.registry DEBUG 2024-02-23 13:08:02,205 [pN:main,p:73244,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.proteomics:MzML' galaxy.datatypes.registry DEBUG 2024-02-23 13:08:02,205 [pN:main,p:73244,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.proteomics:MzQuantML' galaxy.datatypes.registry DEBUG 2024-02-23 13:08:02,205 [pN:main,p:73244,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.proteomics:MzTab' galaxy.datatypes.registry DEBUG 2024-02-23 13:08:02,205 [pN:main,p:73244,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.proteomics:MzTab2' galaxy.datatypes.registry DEBUG 2024-02-23 13:08:02,205 [pN:main,p:73244,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.proteomics:ParamXml' galaxy.datatypes.registry DEBUG 2024-02-23 13:08:02,205 [pN:main,p:73244,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.proteomics:MzXML' galaxy.datatypes.registry DEBUG 2024-02-23 13:08:02,205 [pN:main,p:73244,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.proteomics:NmrML' galaxy.datatypes.registry DEBUG 2024-02-23 13:08:02,205 [pN:main,p:73244,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.proteomics:Kroenik' galaxy.datatypes.registry DEBUG 2024-02-23 13:08:02,205 [pN:main,p:73244,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.proteomics:PepList' galaxy.datatypes.registry DEBUG 2024-02-23 13:08:02,205 [pN:main,p:73244,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.proteomics:PSMS' galaxy.datatypes.registry DEBUG 2024-02-23 13:08:02,205 [pN:main,p:73244,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.proteomics:PepXml' galaxy.datatypes.registry DEBUG 2024-02-23 13:08:02,205 [pN:main,p:73244,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.proteomics:ProtXML' galaxy.datatypes.registry DEBUG 2024-02-23 13:08:02,205 [pN:main,p:73244,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.proteomics:SPLib' galaxy.datatypes.registry DEBUG 2024-02-23 13:08:02,205 [pN:main,p:73244,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.proteomics:TandemXML' galaxy.datatypes.registry DEBUG 2024-02-23 13:08:02,206 [pN:main,p:73244,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.proteomics:ThermoRAW' galaxy.datatypes.registry DEBUG 2024-02-23 13:08:02,206 [pN:main,p:73244,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.proteomics:TraML' galaxy.datatypes.registry DEBUG 2024-02-23 13:08:02,206 [pN:main,p:73244,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.proteomics:TrafoXML' galaxy.datatypes.registry DEBUG 2024-02-23 13:08:02,206 [pN:main,p:73244,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.proteomics:UniProtXML' galaxy.datatypes.registry DEBUG 2024-02-23 13:08:02,206 [pN:main,p:73244,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.proteomics:XquestXML' galaxy.datatypes.registry DEBUG 2024-02-23 13:08:02,206 [pN:main,p:73244,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.proteomics:XquestSpecXML' galaxy.datatypes.registry DEBUG 2024-02-23 13:08:02,206 [pN:main,p:73244,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.proteomics:QCML' galaxy.datatypes.registry DEBUG 2024-02-23 13:08:02,206 [pN:main,p:73244,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.proteomics:Wiff' galaxy.datatypes.registry DEBUG 2024-02-23 13:08:02,206 [pN:main,p:73244,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.proteomics:PEFF' galaxy.datatypes.registry DEBUG 2024-02-23 13:08:02,206 [pN:main,p:73244,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.molecules:CML' galaxy.datatypes.registry DEBUG 2024-02-23 13:08:02,206 [pN:main,p:73244,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.xml:GenericXml' galaxy.datatypes.registry DEBUG 2024-02-23 13:08:02,206 [pN:main,p:73244,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.triples:HDT' galaxy.datatypes.registry DEBUG 2024-02-23 13:08:02,206 [pN:main,p:73244,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.triples:Turtle' galaxy.datatypes.registry DEBUG 2024-02-23 13:08:02,206 [pN:main,p:73244,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.triples:NTriples' galaxy.datatypes.registry DEBUG 2024-02-23 13:08:02,207 [pN:main,p:73244,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.triples:Jsonld' galaxy.datatypes.registry DEBUG 2024-02-23 13:08:02,207 [pN:main,p:73244,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.sequence:Maf' galaxy.datatypes.registry DEBUG 2024-02-23 13:08:02,207 [pN:main,p:73244,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.sequence:Lav' galaxy.datatypes.registry DEBUG 2024-02-23 13:08:02,207 [pN:main,p:73244,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.sequence:MemePsp' galaxy.datatypes.registry DEBUG 2024-02-23 13:08:02,207 [pN:main,p:73244,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.sequence:Fastg' galaxy.datatypes.registry DEBUG 2024-02-23 13:08:02,207 [pN:main,p:73244,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.sequence:csFasta' galaxy.datatypes.registry DEBUG 2024-02-23 13:08:02,207 [pN:main,p:73244,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.qualityscore:QualityScoreSOLiD' galaxy.datatypes.registry DEBUG 2024-02-23 13:08:02,207 [pN:main,p:73244,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.qualityscore:QualityScore454' galaxy.datatypes.registry DEBUG 2024-02-23 13:08:02,207 [pN:main,p:73244,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.molecules:SDF' galaxy.datatypes.registry DEBUG 2024-02-23 13:08:02,207 [pN:main,p:73244,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.molecules:PDB' galaxy.datatypes.registry DEBUG 2024-02-23 13:08:02,207 [pN:main,p:73244,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.molecules:Cell' galaxy.datatypes.registry DEBUG 2024-02-23 13:08:02,207 [pN:main,p:73244,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.molecules:CIF' galaxy.datatypes.registry DEBUG 2024-02-23 13:08:02,207 [pN:main,p:73244,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.molecules:ExtendedXYZ' galaxy.datatypes.registry DEBUG 2024-02-23 13:08:02,207 [pN:main,p:73244,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.molecules:XYZ' galaxy.datatypes.registry DEBUG 2024-02-23 13:08:02,208 [pN:main,p:73244,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.molecules:MOL2' galaxy.datatypes.registry DEBUG 2024-02-23 13:08:02,208 [pN:main,p:73244,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.molecules:InChI' galaxy.datatypes.registry DEBUG 2024-02-23 13:08:02,208 [pN:main,p:73244,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.molecules:FPS' galaxy.datatypes.registry DEBUG 2024-02-23 13:08:02,208 [pN:main,p:73244,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.molecules:PQR' galaxy.datatypes.registry DEBUG 2024-02-23 13:08:02,208 [pN:main,p:73244,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.molecules:GRO' galaxy.datatypes.registry DEBUG 2024-02-23 13:08:02,208 [pN:main,p:73244,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.phylip:Phylip' galaxy.datatypes.registry DEBUG 2024-02-23 13:08:02,208 [pN:main,p:73244,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.sequence:Fasta' galaxy.datatypes.registry DEBUG 2024-02-23 13:08:02,208 [pN:main,p:73244,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.sequence:FastqCSSanger' galaxy.datatypes.registry DEBUG 2024-02-23 13:08:02,208 [pN:main,p:73244,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.sequence:FastqSanger' galaxy.datatypes.registry DEBUG 2024-02-23 13:08:02,208 [pN:main,p:73244,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.sequence:Fastq' galaxy.datatypes.registry DEBUG 2024-02-23 13:08:02,208 [pN:main,p:73244,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.interval:Wiggle' galaxy.datatypes.registry DEBUG 2024-02-23 13:08:02,208 [pN:main,p:73244,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.text:Html' galaxy.datatypes.registry DEBUG 2024-02-23 13:08:02,208 [pN:main,p:73244,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.images:Pdf' galaxy.datatypes.registry DEBUG 2024-02-23 13:08:02,209 [pN:main,p:73244,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.sequence:Axt' galaxy.datatypes.registry DEBUG 2024-02-23 13:08:02,209 [pN:main,p:73244,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.sequence:Genbank' galaxy.datatypes.registry DEBUG 2024-02-23 13:08:02,209 [pN:main,p:73244,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.interval:Bed' galaxy.datatypes.registry DEBUG 2024-02-23 13:08:02,209 [pN:main,p:73244,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.interval:CustomTrack' galaxy.datatypes.registry DEBUG 2024-02-23 13:08:02,209 [pN:main,p:73244,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.interval:Gtf' galaxy.datatypes.registry DEBUG 2024-02-23 13:08:02,209 [pN:main,p:73244,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.interval:Gff' galaxy.datatypes.registry DEBUG 2024-02-23 13:08:02,209 [pN:main,p:73244,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.interval:Gff3' galaxy.datatypes.registry DEBUG 2024-02-23 13:08:02,209 [pN:main,p:73244,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.tabular:Pileup' galaxy.datatypes.registry DEBUG 2024-02-23 13:08:02,209 [pN:main,p:73244,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.tabular:Psl' galaxy.datatypes.registry DEBUG 2024-02-23 13:08:02,209 [pN:main,p:73244,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.text:Paf' galaxy.datatypes.registry DEBUG 2024-02-23 13:08:02,209 [pN:main,p:73244,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.interval:Interval' galaxy.datatypes.registry DEBUG 2024-02-23 13:08:02,209 [pN:main,p:73244,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.tabular:Sam' galaxy.datatypes.registry DEBUG 2024-02-23 13:08:02,210 [pN:main,p:73244,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.data:Newick' galaxy.datatypes.registry DEBUG 2024-02-23 13:08:02,210 [pN:main,p:73244,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.data:Nexus' galaxy.datatypes.registry DEBUG 2024-02-23 13:08:02,210 [pN:main,p:73244,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.text:IQTree' galaxy.datatypes.registry DEBUG 2024-02-23 13:08:02,210 [pN:main,p:73244,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.text:Obo' galaxy.datatypes.registry DEBUG 2024-02-23 13:08:02,210 [pN:main,p:73244,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.text:Arff' galaxy.datatypes.registry DEBUG 2024-02-23 13:08:02,210 [pN:main,p:73244,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.text:Ipynb' galaxy.datatypes.registry DEBUG 2024-02-23 13:08:02,210 [pN:main,p:73244,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.text:Biom1' galaxy.datatypes.registry DEBUG 2024-02-23 13:08:02,210 [pN:main,p:73244,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.text:ImgtJson' galaxy.datatypes.registry DEBUG 2024-02-23 13:08:02,210 [pN:main,p:73244,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.text:GeoJson' galaxy.datatypes.registry DEBUG 2024-02-23 13:08:02,210 [pN:main,p:73244,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.text:PithyaResult' galaxy.datatypes.registry DEBUG 2024-02-23 13:08:02,210 [pN:main,p:73244,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.text:BCSLts' galaxy.datatypes.registry DEBUG 2024-02-23 13:08:02,210 [pN:main,p:73244,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.text:Json' galaxy.datatypes.registry DEBUG 2024-02-23 13:08:02,210 [pN:main,p:73244,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.genetics:GenotypeMatrix' galaxy.datatypes.registry DEBUG 2024-02-23 13:08:02,210 [pN:main,p:73244,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.genetics:DataIn' galaxy.datatypes.registry DEBUG 2024-02-23 13:08:02,211 [pN:main,p:73244,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.genetics:MarkerMap' galaxy.datatypes.registry DEBUG 2024-02-23 13:08:02,211 [pN:main,p:73244,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.genetics:AllegroLOD' galaxy.datatypes.registry DEBUG 2024-02-23 13:08:02,211 [pN:main,p:73244,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.sequence:RNADotPlotMatrix' galaxy.datatypes.registry DEBUG 2024-02-23 13:08:02,211 [pN:main,p:73244,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.sequence:DotBracket' galaxy.datatypes.registry DEBUG 2024-02-23 13:08:02,211 [pN:main,p:73244,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.tabular:CMAP' galaxy.datatypes.registry DEBUG 2024-02-23 13:08:02,211 [pN:main,p:73244,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.tabular:ConnectivityTable' galaxy.datatypes.registry DEBUG 2024-02-23 13:08:02,211 [pN:main,p:73244,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.tabular:CSV' galaxy.datatypes.registry DEBUG 2024-02-23 13:08:02,211 [pN:main,p:73244,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.metacyto:mSummary' galaxy.datatypes.registry DEBUG 2024-02-23 13:08:02,211 [pN:main,p:73244,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.metacyto:mStats' galaxy.datatypes.registry DEBUG 2024-02-23 13:08:02,211 [pN:main,p:73244,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.tabular:TSV' galaxy.datatypes.registry DEBUG 2024-02-23 13:08:02,211 [pN:main,p:73244,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.tabular:MatrixMarket' galaxy.datatypes.registry DEBUG 2024-02-23 13:08:02,211 [pN:main,p:73244,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.msa:Hmmer2' galaxy.datatypes.registry DEBUG 2024-02-23 13:08:02,212 [pN:main,p:73244,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.msa:Hmmer3' galaxy.datatypes.registry DEBUG 2024-02-23 13:08:02,212 [pN:main,p:73244,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.msa:Stockholm_1_0' galaxy.datatypes.registry DEBUG 2024-02-23 13:08:02,212 [pN:main,p:73244,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.msa:MauveXmfa' galaxy.datatypes.registry DEBUG 2024-02-23 13:08:02,212 [pN:main,p:73244,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.msa:InfernalCM' galaxy.datatypes.registry DEBUG 2024-02-23 13:08:02,212 [pN:main,p:73244,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.annotation:SnapHmm' galaxy.datatypes.registry DEBUG 2024-02-23 13:08:02,212 [pN:main,p:73244,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.microarrays:Cel' galaxy.datatypes.registry DEBUG 2024-02-23 13:08:02,212 [pN:main,p:73244,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.microarrays:Gpr' galaxy.datatypes.registry DEBUG 2024-02-23 13:08:02,212 [pN:main,p:73244,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.microarrays:Gal' galaxy.datatypes.registry DEBUG 2024-02-23 13:08:02,212 [pN:main,p:73244,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.binary:RData' galaxy.datatypes.registry DEBUG 2024-02-23 13:08:02,212 [pN:main,p:73244,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.binary:RDS' galaxy.datatypes.registry DEBUG 2024-02-23 13:08:02,212 [pN:main,p:73244,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.images:Mrc2014' galaxy.datatypes.registry DEBUG 2024-02-23 13:08:02,212 [pN:main,p:73244,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.images:Jpg' galaxy.datatypes.registry DEBUG 2024-02-23 13:08:02,212 [pN:main,p:73244,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.images:Png' galaxy.datatypes.registry DEBUG 2024-02-23 13:08:02,213 [pN:main,p:73244,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.images:OMETiff' galaxy.datatypes.registry DEBUG 2024-02-23 13:08:02,213 [pN:main,p:73244,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.images:Tiff' galaxy.datatypes.registry DEBUG 2024-02-23 13:08:02,213 [pN:main,p:73244,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.images:Bmp' galaxy.datatypes.registry DEBUG 2024-02-23 13:08:02,213 [pN:main,p:73244,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.images:Gif' galaxy.datatypes.registry DEBUG 2024-02-23 13:08:02,213 [pN:main,p:73244,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.images:Im' galaxy.datatypes.registry DEBUG 2024-02-23 13:08:02,213 [pN:main,p:73244,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.images:Pcd' galaxy.datatypes.registry DEBUG 2024-02-23 13:08:02,213 [pN:main,p:73244,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.images:Pcx' galaxy.datatypes.registry DEBUG 2024-02-23 13:08:02,213 [pN:main,p:73244,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.images:Ppm' galaxy.datatypes.registry DEBUG 2024-02-23 13:08:02,213 [pN:main,p:73244,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.images:Psd' galaxy.datatypes.registry DEBUG 2024-02-23 13:08:02,213 [pN:main,p:73244,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.images:Xbm' galaxy.datatypes.registry DEBUG 2024-02-23 13:08:02,213 [pN:main,p:73244,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.images:Rgb' galaxy.datatypes.registry DEBUG 2024-02-23 13:08:02,213 [pN:main,p:73244,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.images:Pbm' galaxy.datatypes.registry DEBUG 2024-02-23 13:08:02,214 [pN:main,p:73244,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.images:Pgm' galaxy.datatypes.registry DEBUG 2024-02-23 13:08:02,214 [pN:main,p:73244,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.images:Xpm' galaxy.datatypes.registry DEBUG 2024-02-23 13:08:02,214 [pN:main,p:73244,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.images:Eps' galaxy.datatypes.registry DEBUG 2024-02-23 13:08:02,214 [pN:main,p:73244,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.images:Rast' galaxy.datatypes.registry DEBUG 2024-02-23 13:08:02,214 [pN:main,p:73244,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.images:Tck' galaxy.datatypes.registry DEBUG 2024-02-23 13:08:02,214 [pN:main,p:73244,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.images:Trk' galaxy.datatypes.registry DEBUG 2024-02-23 13:08:02,214 [pN:main,p:73244,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.images:Nifti1' galaxy.datatypes.registry DEBUG 2024-02-23 13:08:02,214 [pN:main,p:73244,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.images:Nifti2' galaxy.datatypes.registry DEBUG 2024-02-23 13:08:02,214 [pN:main,p:73244,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.images:Star' galaxy.datatypes.registry DEBUG 2024-02-23 13:08:02,214 [pN:main,p:73244,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.media:Wav' galaxy.datatypes.registry DEBUG 2024-02-23 13:08:02,214 [pN:main,p:73244,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.media:Mkv' galaxy.datatypes.registry DEBUG 2024-02-23 13:08:02,214 [pN:main,p:73244,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.media:Mp3' galaxy.datatypes.registry DEBUG 2024-02-23 13:08:02,215 [pN:main,p:73244,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.media:Mp4' galaxy.datatypes.registry DEBUG 2024-02-23 13:08:02,215 [pN:main,p:73244,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.media:Flv' galaxy.datatypes.registry DEBUG 2024-02-23 13:08:02,215 [pN:main,p:73244,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.media:Mpg' galaxy.datatypes.registry DEBUG 2024-02-23 13:08:02,215 [pN:main,p:73244,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.speech:TextGrid' galaxy.datatypes.registry DEBUG 2024-02-23 13:08:02,215 [pN:main,p:73244,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.speech:BPF' galaxy.datatypes.registry DEBUG 2024-02-23 13:08:02,215 [pN:main,p:73244,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.larch:FEFFInput' galaxy.datatypes.registry DEBUG 2024-02-23 13:08:02,215 [pN:main,p:73244,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.larch:AthenaProject' galaxy.datatypes.registry DEBUG 2024-02-23 13:08:02,215 [pN:main,p:73244,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.text:Castep' galaxy.datatypes.registry DEBUG 2024-02-23 13:08:02,215 [pN:main,p:73244,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.text:CTLresult' galaxy.datatypes.registry DEBUG 2024-02-23 13:08:02,215 [pN:main,p:73244,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.text:FormattedDensity' galaxy.datatypes.registry DEBUG 2024-02-23 13:08:02,215 [pN:main,p:73244,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.text:Param' galaxy.datatypes.registry DEBUG 2024-02-23 13:08:02,215 [pN:main,p:73244,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.text:Yaml' galaxy.datatypes.registry DEBUG 2024-02-23 13:08:02,216 [pN:main,p:73244,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.binary:OxliCountGraph' galaxy.datatypes.registry DEBUG 2024-02-23 13:08:02,216 [pN:main,p:73244,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.binary:OxliNodeGraph' galaxy.datatypes.registry DEBUG 2024-02-23 13:08:02,216 [pN:main,p:73244,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.binary:OxliTagSet' galaxy.datatypes.registry DEBUG 2024-02-23 13:08:02,216 [pN:main,p:73244,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.binary:OxliStopTags' galaxy.datatypes.registry DEBUG 2024-02-23 13:08:02,216 [pN:main,p:73244,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.binary:OxliSubset' galaxy.datatypes.registry DEBUG 2024-02-23 13:08:02,216 [pN:main,p:73244,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.binary:OxliGraphLabels' galaxy.datatypes.registry DEBUG 2024-02-23 13:08:02,216 [pN:main,p:73244,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.binary:FITS' galaxy.datatypes.registry DEBUG 2024-02-23 13:08:02,216 [pN:main,p:73244,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.neo4j:Neo4jDBzip' galaxy.datatypes.registry DEBUG 2024-02-23 13:08:02,216 [pN:main,p:73244,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.text:PithyaProperty' galaxy.datatypes.registry DEBUG 2024-02-23 13:08:02,216 [pN:main,p:73244,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.text:PithyaModel' galaxy.datatypes.registry DEBUG 2024-02-23 13:08:02,216 [pN:main,p:73244,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.text:BCSLmodel' galaxy.datatypes.registry DEBUG 2024-02-23 13:08:02,216 [pN:main,p:73244,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.text:StormSample' galaxy.datatypes.registry DEBUG 2024-02-23 13:08:02,217 [pN:main,p:73244,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.text:StormCheck' galaxy.datatypes.registry DEBUG 2024-02-23 13:08:02,221 [pN:main,p:73244,tN:MainThread] Build site file [tool-data/shared/ucsc/ucsc_build_sites.txt] not found using sample [tool-data/shared/ucsc/ucsc_build_sites.txt.sample]. galaxy.datatypes.registry DEBUG 2024-02-23 13:08:02,221 [pN:main,p:73244,tN:MainThread] Loaded build site 'ucsc': tool-data/shared/ucsc/ucsc_build_sites.txt.sample with display sites: ['main', 'test', 'archaea', 'ucla'] galaxy.datatypes.registry DEBUG 2024-02-23 13:08:02,221 [pN:main,p:73244,tN:MainThread] Loaded build site 'gbrowse': tool-data/shared/gbrowse/gbrowse_build_sites.txt with display sites: ['modencode', 'sgd_yeast', 'tair', 'wormbase', 'wormbase_ws120', 'wormbase_ws140', 'wormbase_ws170', 'wormbase_ws180', 'wormbase_ws190', 'wormbase_ws200', 'wormbase_ws204', 'wormbase_ws210', 'wormbase_ws220', 'wormbase_ws225'] galaxy.datatypes.registry DEBUG 2024-02-23 13:08:02,222 [pN:main,p:73244,tN:MainThread] Loaded build site 'ensembl': tool-data/shared/ensembl/ensembl_sites.txt galaxy.datatypes.registry DEBUG 2024-02-23 13:08:02,222 [pN:main,p:73244,tN:MainThread] Loaded build site 'ensembl_data_url': tool-data/shared/ensembl/ensembl_sites_data_URL.txt galaxy.datatypes.registry DEBUG 2024-02-23 13:08:02,222 [pN:main,p:73244,tN:MainThread] Build site file [tool-data/shared/igv/igv_build_sites.txt] not found using sample [tool-data/shared/igv/igv_build_sites.txt.sample]. galaxy.datatypes.registry DEBUG 2024-02-23 13:08:02,222 [pN:main,p:73244,tN:MainThread] Loaded build site 'igv': tool-data/shared/igv/igv_build_sites.txt.sample galaxy.datatypes.registry DEBUG 2024-02-23 13:08:02,222 [pN:main,p:73244,tN:MainThread] Build site file [tool-data/shared/rviewer/rviewer_build_sites.txt] not found using sample [tool-data/shared/rviewer/rviewer_build_sites.txt.sample]. galaxy.datatypes.registry DEBUG 2024-02-23 13:08:02,222 [pN:main,p:73244,tN:MainThread] Loaded build site 'rviewer': tool-data/shared/rviewer/rviewer_build_sites.txt.sample galaxy.util.tool_shed.tool_shed_registry DEBUG 2024-02-23 13:08:02,223 [pN:main,p:73244,tN:MainThread] Loading references to tool sheds from /tmp/tmpcb4g3qga/tool_sheds_conf.xml galaxy.util.tool_shed.tool_shed_registry DEBUG 2024-02-23 13:08:02,223 [pN:main,p:73244,tN:MainThread] Loaded reference to tool shed: Target Shed galaxy.queue_worker INFO 2024-02-23 13:08:02,223 [pN:main,p:73244,tN:MainThread] Initializing main Galaxy Queue Worker on sqlalchemy+sqlite:////tmp/tmpcb4g3qga/galaxy.sqlite?isolation_level=IMMEDIATE galaxy.tool_util.data WARNING 2024-02-23 13:08:02,234 [pN:main,p:73244,tN:MainThread] Cannot find index file '/scratch/rico/galaxytools/tools/ncbi_fcs_adaptor/test-data/ncbi_fcs_adaptor_config.tsv' for tool data table 'ncbi_fcs_adaptor_config' galaxy.tool_util.data DEBUG 2024-02-23 13:08:02,234 [pN:main,p:73244,tN:MainThread] Loaded tool data table 'ncbi_fcs_adaptor_config' from file '/scratch/rico/galaxytools/tools/ncbi_fcs_adaptor/tool_data_table_conf.xml.test' galaxy.tool_util.data WARNING 2024-02-23 13:08:02,235 [pN:main,p:73244,tN:MainThread] Cannot find index file '/scratch/rico/galaxytools/tools/ncbi_fcs_adaptor/test-data/ncbi_fcs_adaptor_databases.loc' for tool data table 'ncbi_fcs_adaptor_databases' galaxy.tool_util.data DEBUG 2024-02-23 13:08:02,235 [pN:main,p:73244,tN:MainThread] Loaded tool data table 'ncbi_fcs_adaptor_databases' from file '/scratch/rico/galaxytools/tools/ncbi_fcs_adaptor/tool_data_table_conf.xml.test' galaxy.tool_util.data WARNING 2024-02-23 13:08:02,235 [pN:main,p:73244,tN:MainThread] Cannot find index file '/scratch/rico/galaxytools/tools/ncbi_fcs_adaptor/test-data/ncbi_fcs_adaptor_divisions.tsv' for tool data table 'ncbi_fcs_adaptor_divisions' galaxy.tool_util.data DEBUG 2024-02-23 13:08:02,235 [pN:main,p:73244,tN:MainThread] Loaded tool data table 'ncbi_fcs_adaptor_divisions' from file '/scratch/rico/galaxytools/tools/ncbi_fcs_adaptor/tool_data_table_conf.xml.test' galaxy.visualization.genomes ERROR 2024-02-23 13:08:02,240 [pN:main,p:73244,tN:MainThread] Error reading twobit.loc Traceback (most recent call last): File "/scratch/rico/galaxy/lib/galaxy/visualization/genomes.py", line 220, in reload_genomes with open(twobit_path) as f: FileNotFoundError: [Errno 2] No such file or directory: '/scratch/rico/galaxy/tool-data/twobit.loc' galaxy.util WARNING 2024-02-23 13:08:02,478 [pN:main,p:73244,tN:MainThread] directory not found: /scratch/rico/galaxy/lib/galaxy/util/../../../config/plugins/activities galaxy.tools WARNING 2024-02-23 13:08:02,479 [pN:main,p:73244,tN:MainThread] The default shed tool config file (/tmp/tmpcb4g3qga/shed_tool_conf.xml) has been added to the tool_config_file option, if this is not the desired behavior, please set shed_tool_config_file to your primary shed-enabled tool config file galaxy.tool_util.toolbox.base INFO 2024-02-23 13:08:02,479 [pN:main,p:73244,tN:MainThread] Parsing the tool configuration /tmp/tmpcb4g3qga/tool_conf.xml galaxy.tool_util.toolbox.base DEBUG 2024-02-23 13:08:02,479 [pN:main,p:73244,tN:MainThread] Tool path for tool configuration /tmp/tmpcb4g3qga/tool_conf.xml is None galaxy.tool_util.toolbox.base DEBUG 2024-02-23 13:08:02,489 [pN:main,p:73244,tN:MainThread] Loaded tool id: upload1, version: 1.1.7 into tool panel.. galaxy.tool_util.toolbox.base DEBUG 2024-02-23 13:08:02,492 [pN:main,p:73244,tN:MainThread] Loaded tool id: ncbi_fcs_adaptor, version: 0.5.0+galaxy0 into tool panel.. galaxy.tools WARNING 2024-02-23 13:08:02,492 [pN:main,p:73244,tN:MainThread] The default shed tool config file (/tmp/tmpcb4g3qga/shed_tool_conf.xml) has been added to the tool_config_file option, if this is not the desired behavior, please set shed_tool_config_file to your primary shed-enabled tool config file galaxy.tool_util.toolbox.base INFO 2024-02-23 13:08:02,492 [pN:main,p:73244,tN:MainThread] Parsing the tool configuration /tmp/tmpcb4g3qga/shed_tools_conf.xml galaxy.tool_util.toolbox.base DEBUG 2024-02-23 13:08:02,492 [pN:main,p:73244,tN:MainThread] Tool path for shed tool configuration /tmp/tmpcb4g3qga/shed_tools_conf.xml is /tmp/tmpcb4g3qga/shed_tools galaxy.tools WARNING 2024-02-23 13:08:02,492 [pN:main,p:73244,tN:MainThread] The default shed tool config file (/tmp/tmpcb4g3qga/shed_tool_conf.xml) has been added to the tool_config_file option, if this is not the desired behavior, please set shed_tool_config_file to your primary shed-enabled tool config file galaxy.tool_util.toolbox.base INFO 2024-02-23 13:08:02,493 [pN:main,p:73244,tN:MainThread] Parsing the tool configuration /tmp/tmpcb4g3qga/empty_tool_conf.xml galaxy.tool_util.toolbox.base DEBUG 2024-02-23 13:08:02,493 [pN:main,p:73244,tN:MainThread] Tool path for tool configuration /tmp/tmpcb4g3qga/empty_tool_conf.xml is None galaxy.tool_util.toolbox.base DEBUG 2024-02-23 13:08:02,493 [pN:main,p:73244,tN:MainThread] Reading tools from config files finished (14.563 ms) galaxy.tool_util.toolbox.base DEBUG 2024-02-23 13:08:02,495 [pN:main,p:73244,tN:MainThread] Loaded tool id: upload1, version: 1.1.7 into tool panel.. galaxy.tool_util.toolbox.views.edam DEBUG 2024-02-23 13:08:02,495 [pN:main,p:73244,tN:MainThread] Loading EDAM tool panel finished (1.547 ms) galaxy.tool_util.toolbox.base DEBUG 2024-02-23 13:08:02,496 [pN:main,p:73244,tN:MainThread] Loaded tool id: upload1, version: 1.1.7 into tool panel.. galaxy.tool_util.toolbox.views.edam DEBUG 2024-02-23 13:08:02,496 [pN:main,p:73244,tN:MainThread] Loading EDAM tool panel finished (1.258 ms) galaxy.tool_util.toolbox.integrated_panel DEBUG 2024-02-23 13:08:02,496 [pN:main,p:73244,tN:MainThread] Writing integrated tool panel config file to '/tmp/tmpcb4g3qga/integrated_tool_panel_conf.xml' galaxy.util ERROR 2024-02-23 13:08:02,936 [pN:main,p:73244,tN:MainThread] Error parsing file /tmp/tmpcb4g3qga Traceback (most recent call last): File "/scratch/rico/galaxy/lib/galaxy/util/__init__.py", line 305, in parse_xml tree = etree.parse(str(fname), parser=parser) File "src/lxml/etree.pyx", line 3541, in lxml.etree.parse File "src/lxml/parser.pxi", line 1879, in lxml.etree._parseDocument File "src/lxml/parser.pxi", line 1905, in lxml.etree._parseDocumentFromURL File "src/lxml/parser.pxi", line 1808, in lxml.etree._parseDocFromFile File "src/lxml/parser.pxi", line 1180, in lxml.etree._BaseParser._parseDocFromFile File "src/lxml/parser.pxi", line 618, in lxml.etree._ParserContext._handleParseResultDoc File "src/lxml/parser.pxi", line 728, in lxml.etree._handleParseResult File "src/lxml/parser.pxi", line 657, in lxml.etree._raiseParseError File "/tmp/tmpcb4g3qga", line 1 lxml.etree.XMLSyntaxError: Document is empty, line 1, column 1 galaxy.tools.data_manager.manager ERROR 2024-02-23 13:08:02,937 [pN:main,p:73244,tN:MainThread] There was an error parsing your Data Manager config file "/tmp/tmpcb4g3qga": Document is empty, line 1, column 1 (tmpcb4g3qga, line 1) galaxy.datatypes.registry DEBUG 2024-02-23 13:08:02,938 [pN:main,p:73244,tN:MainThread] Loaded display application 'ucsc_bam' for datatype 'bam', inherit=False. galaxy.datatypes.registry DEBUG 2024-02-23 13:08:02,939 [pN:main,p:73244,tN:MainThread] Loaded display application 'ensembl_bam' for datatype 'bam', inherit=False. galaxy.datatypes.display_applications.application ERROR 2024-02-23 13:08:02,939 [pN:main,p:73244,tN:MainThread] Error loading a set of Dynamic Display Application links: Unable to find data table named "igv_broad_genomes". galaxy.datatypes.registry DEBUG 2024-02-23 13:08:02,941 [pN:main,p:73244,tN:MainThread] Loaded display application 'igv_bam' for datatype 'bam', inherit=False. galaxy.datatypes.registry DEBUG 2024-02-23 13:08:02,941 [pN:main,p:73244,tN:MainThread] Loaded display application 'igb_bam' for datatype 'bam', inherit=False. galaxy.datatypes.display_applications.application ERROR 2024-02-23 13:08:02,941 [pN:main,p:73244,tN:MainThread] Error loading a set of Dynamic Display Application links: Unable to find data table named "bam_iobio". galaxy.datatypes.registry DEBUG 2024-02-23 13:08:02,941 [pN:main,p:73244,tN:MainThread] Loaded display application 'iobio_bam' for datatype 'bam', inherit=False. galaxy.datatypes.registry DEBUG 2024-02-23 13:08:02,941 [pN:main,p:73244,tN:MainThread] Loaded display application 'igb_bed' for datatype 'bed', inherit=False. galaxy.datatypes.registry DEBUG 2024-02-23 13:08:02,942 [pN:main,p:73244,tN:MainThread] Loaded display application 'igb_bedgraph' for datatype 'bedgraph', inherit=False. galaxy.datatypes.registry DEBUG 2024-02-23 13:08:02,942 [pN:main,p:73244,tN:MainThread] Loaded display application 'ucsc_bigbed' for datatype 'bigbed', inherit=False. galaxy.datatypes.registry DEBUG 2024-02-23 13:08:02,942 [pN:main,p:73244,tN:MainThread] Loaded display application 'igb_bb' for datatype 'bigbed', inherit=False. galaxy.datatypes.registry DEBUG 2024-02-23 13:08:02,943 [pN:main,p:73244,tN:MainThread] Loaded display application 'ucsc_bigwig' for datatype 'bigwig', inherit=False. galaxy.datatypes.registry DEBUG 2024-02-23 13:08:02,943 [pN:main,p:73244,tN:MainThread] Loaded display application 'igb_bigwig' for datatype 'bigwig', inherit=False. galaxy.datatypes.registry DEBUG 2024-02-23 13:08:02,944 [pN:main,p:73244,tN:MainThread] Loaded display application 'igv_bigwig' for datatype 'bigwig', inherit=False. galaxy.datatypes.display_applications.application ERROR 2024-02-23 13:08:02,944 [pN:main,p:73244,tN:MainThread] Error loading a set of Dynamic Display Application links: Unable to find data table named "intermine_simple_display". galaxy.datatypes.registry DEBUG 2024-02-23 13:08:02,944 [pN:main,p:73244,tN:MainThread] Loaded display application 'intermine_simple' for datatype 'intermine_tabular', inherit=False. galaxy.datatypes.display_applications.application ERROR 2024-02-23 13:08:02,945 [pN:main,p:73244,tN:MainThread] Error loading a set of Dynamic Display Application links: Unable to find data table named "igv_broad_genomes". galaxy.datatypes.registry DEBUG 2024-02-23 13:08:02,945 [pN:main,p:73244,tN:MainThread] Loaded display application 'igv_fasta' for datatype 'fasta', inherit=True. galaxy.datatypes.registry DEBUG 2024-02-23 13:08:02,946 [pN:main,p:73244,tN:MainThread] Loaded display application 'ensembl_gff' for datatype 'gff', inherit=True. galaxy.datatypes.display_applications.application ERROR 2024-02-23 13:08:02,947 [pN:main,p:73244,tN:MainThread] Error loading a set of Dynamic Display Application links: Unable to find data table named "igv_broad_genomes". galaxy.datatypes.registry DEBUG 2024-02-23 13:08:02,947 [pN:main,p:73244,tN:MainThread] Loaded display application 'igv_gff' for datatype 'gff', inherit=True. galaxy.datatypes.registry DEBUG 2024-02-23 13:08:02,947 [pN:main,p:73244,tN:MainThread] Loaded display application 'igb_gtf' for datatype 'gtf', inherit=False. galaxy.datatypes.registry DEBUG 2024-02-23 13:08:02,948 [pN:main,p:73244,tN:MainThread] Loaded display application 'ensembl_interval' for datatype 'interval', inherit=True. galaxy.datatypes.registry DEBUG 2024-02-23 13:08:02,949 [pN:main,p:73244,tN:MainThread] Loaded display application 'gbrowse_interval_as_bed' for datatype 'interval', inherit=True. galaxy.datatypes.registry DEBUG 2024-02-23 13:08:02,949 [pN:main,p:73244,tN:MainThread] Loaded display application 'rviewer_interval' for datatype 'interval', inherit=True. galaxy.datatypes.display_applications.application ERROR 2024-02-23 13:08:02,950 [pN:main,p:73244,tN:MainThread] Error loading a set of Dynamic Display Application links: Unable to find data table named "igv_broad_genomes". galaxy.datatypes.registry DEBUG 2024-02-23 13:08:02,950 [pN:main,p:73244,tN:MainThread] Loaded display application 'igv_interval_as_bed' for datatype 'interval', inherit=True. galaxy.datatypes.registry DEBUG 2024-02-23 13:08:02,950 [pN:main,p:73244,tN:MainThread] Loaded display application 'avivator' for datatype 'ome.tiff', inherit=False. galaxy.datatypes.display_applications.application ERROR 2024-02-23 13:08:02,950 [pN:main,p:73244,tN:MainThread] Error loading a set of Dynamic Display Application links: Unable to find data table named "q2view_display". galaxy.datatypes.registry DEBUG 2024-02-23 13:08:02,951 [pN:main,p:73244,tN:MainThread] Loaded display application 'q2view' for datatype 'qza', inherit=False. galaxy.datatypes.display_applications.application ERROR 2024-02-23 13:08:02,951 [pN:main,p:73244,tN:MainThread] Error loading a set of Dynamic Display Application links: Unable to find data table named "q2view_display". galaxy.datatypes.registry DEBUG 2024-02-23 13:08:02,951 [pN:main,p:73244,tN:MainThread] Loaded display application 'q2view' for datatype 'qzv', inherit=False. galaxy.datatypes.registry DEBUG 2024-02-23 13:08:02,951 [pN:main,p:73244,tN:MainThread] Loaded display application 'ucsc_maf_customtrack' for datatype 'mafcustomtrack', inherit=False. galaxy.datatypes.registry DEBUG 2024-02-23 13:08:02,952 [pN:main,p:73244,tN:MainThread] Loaded display application 'minerva_tabular' for datatype 'tabular', inherit=False. galaxy.datatypes.registry DEBUG 2024-02-23 13:08:02,952 [pN:main,p:73244,tN:MainThread] Loaded display application 'ucsc_vcf' for datatype 'vcf', inherit=False. galaxy.datatypes.display_applications.application ERROR 2024-02-23 13:08:02,953 [pN:main,p:73244,tN:MainThread] Error loading a set of Dynamic Display Application links: Unable to find data table named "igv_broad_genomes". galaxy.datatypes.registry DEBUG 2024-02-23 13:08:02,953 [pN:main,p:73244,tN:MainThread] Loaded display application 'igv_vcf' for datatype 'vcf', inherit=False. galaxy.datatypes.registry DEBUG 2024-02-23 13:08:02,953 [pN:main,p:73244,tN:MainThread] Loaded display application 'rviewer_vcf' for datatype 'vcf', inherit=True. galaxy.datatypes.display_applications.application ERROR 2024-02-23 13:08:02,953 [pN:main,p:73244,tN:MainThread] Error loading a set of Dynamic Display Application links: Unable to find data table named "vcf_iobio". galaxy.datatypes.registry DEBUG 2024-02-23 13:08:02,954 [pN:main,p:73244,tN:MainThread] Loaded display application 'iobio_vcf' for datatype 'vcf', inherit=False. galaxy.datatypes.registry DEBUG 2024-02-23 13:08:02,954 [pN:main,p:73244,tN:MainThread] Loaded display application 'igb_wig' for datatype 'wig', inherit=False. galaxy.datatypes.display_applications.application ERROR 2024-02-23 13:08:02,954 [pN:main,p:73244,tN:MainThread] Error loading a set of Dynamic Display Application links: Unable to find data table named "igv_broad_genomes". galaxy.datatypes.registry DEBUG 2024-02-23 13:08:02,954 [pN:main,p:73244,tN:MainThread] Loaded display application 'igv_vcf' for datatype 'vcf_bgzip', inherit=False. galaxy.datatypes.display_applications.application ERROR 2024-02-23 13:08:02,955 [pN:main,p:73244,tN:MainThread] Error loading a set of Dynamic Display Application links: Unable to find data table named "igv_broad_genomes". galaxy.datatypes.registry DEBUG 2024-02-23 13:08:02,955 [pN:main,p:73244,tN:MainThread] Loaded display application 'igv_genbank' for datatype 'genbank', inherit=False. galaxy.datatypes.display_applications.application ERROR 2024-02-23 13:08:02,955 [pN:main,p:73244,tN:MainThread] Error loading a set of Dynamic Display Application links: Unable to find data table named "biom_simple_display". galaxy.datatypes.registry DEBUG 2024-02-23 13:08:02,955 [pN:main,p:73244,tN:MainThread] Loaded display application 'biom_simple' for datatype 'biom1', inherit=False. galaxy.datatypes.display_applications.application ERROR 2024-02-23 13:08:02,955 [pN:main,p:73244,tN:MainThread] Error loading a set of Dynamic Display Application links: Unable to find data table named "icn3d_simple_display". galaxy.datatypes.registry DEBUG 2024-02-23 13:08:02,956 [pN:main,p:73244,tN:MainThread] Loaded display application 'icn3d_simple' for datatype 'sdf', inherit=False. galaxy.datatypes.display_applications.application ERROR 2024-02-23 13:08:02,956 [pN:main,p:73244,tN:MainThread] Error loading a set of Dynamic Display Application links: Unable to find data table named "icn3d_simple_display". galaxy.datatypes.registry DEBUG 2024-02-23 13:08:02,956 [pN:main,p:73244,tN:MainThread] Loaded display application 'icn3d_simple' for datatype 'mol2', inherit=False. galaxy.datatypes.display_applications.application ERROR 2024-02-23 13:08:02,956 [pN:main,p:73244,tN:MainThread] Error loading a set of Dynamic Display Application links: Unable to find data table named "icn3d_simple_display". galaxy.datatypes.registry DEBUG 2024-02-23 13:08:02,956 [pN:main,p:73244,tN:MainThread] Loaded display application 'icn3d_simple' for datatype 'pdb', inherit=False. galaxy.datatypes.registry DEBUG 2024-02-23 13:08:02,956 [pN:main,p:73244,tN:MainThread] Loaded display application 'ucsc_trackhub' for datatype 'trackhub', inherit=False. galaxy.datatypes.registry DEBUG 2024-02-23 13:08:02,956 [pN:main,p:73244,tN:MainThread] Adding inherited display application 'ensembl_interval' to datatype 'bed' galaxy.datatypes.registry DEBUG 2024-02-23 13:08:02,956 [pN:main,p:73244,tN:MainThread] Adding inherited display application 'gbrowse_interval_as_bed' to datatype 'bed' galaxy.datatypes.registry DEBUG 2024-02-23 13:08:02,957 [pN:main,p:73244,tN:MainThread] Adding inherited display application 'rviewer_interval' to datatype 'bed' galaxy.datatypes.registry DEBUG 2024-02-23 13:08:02,957 [pN:main,p:73244,tN:MainThread] Adding inherited display application 'igv_interval_as_bed' to datatype 'bed' galaxy.datatypes.registry DEBUG 2024-02-23 13:08:02,957 [pN:main,p:73244,tN:MainThread] Adding inherited display application 'ensembl_interval' to datatype 'bedgraph' galaxy.datatypes.registry DEBUG 2024-02-23 13:08:02,957 [pN:main,p:73244,tN:MainThread] Adding inherited display application 'gbrowse_interval_as_bed' to datatype 'bedgraph' galaxy.datatypes.registry DEBUG 2024-02-23 13:08:02,957 [pN:main,p:73244,tN:MainThread] Adding inherited display application 'rviewer_interval' to datatype 'bedgraph' galaxy.datatypes.registry DEBUG 2024-02-23 13:08:02,957 [pN:main,p:73244,tN:MainThread] Adding inherited display application 'igv_interval_as_bed' to datatype 'bedgraph' galaxy.datatypes.registry DEBUG 2024-02-23 13:08:02,957 [pN:main,p:73244,tN:MainThread] Adding inherited display application 'ensembl_interval' to datatype 'bedstrict' galaxy.datatypes.registry DEBUG 2024-02-23 13:08:02,957 [pN:main,p:73244,tN:MainThread] Adding inherited display application 'gbrowse_interval_as_bed' to datatype 'bedstrict' galaxy.datatypes.registry DEBUG 2024-02-23 13:08:02,957 [pN:main,p:73244,tN:MainThread] Adding inherited display application 'rviewer_interval' to datatype 'bedstrict' galaxy.datatypes.registry DEBUG 2024-02-23 13:08:02,957 [pN:main,p:73244,tN:MainThread] Adding inherited display application 'igv_interval_as_bed' to datatype 'bedstrict' galaxy.datatypes.registry DEBUG 2024-02-23 13:08:02,957 [pN:main,p:73244,tN:MainThread] Adding inherited display application 'ensembl_interval' to datatype 'bed6' galaxy.datatypes.registry DEBUG 2024-02-23 13:08:02,957 [pN:main,p:73244,tN:MainThread] Adding inherited display application 'gbrowse_interval_as_bed' to datatype 'bed6' galaxy.datatypes.registry DEBUG 2024-02-23 13:08:02,957 [pN:main,p:73244,tN:MainThread] Adding inherited display application 'rviewer_interval' to datatype 'bed6' galaxy.datatypes.registry DEBUG 2024-02-23 13:08:02,957 [pN:main,p:73244,tN:MainThread] Adding inherited display application 'igv_interval_as_bed' to datatype 'bed6' galaxy.datatypes.registry DEBUG 2024-02-23 13:08:02,957 [pN:main,p:73244,tN:MainThread] Adding inherited display application 'ensembl_interval' to datatype 'bed12' galaxy.datatypes.registry DEBUG 2024-02-23 13:08:02,957 [pN:main,p:73244,tN:MainThread] Adding inherited display application 'gbrowse_interval_as_bed' to datatype 'bed12' galaxy.datatypes.registry DEBUG 2024-02-23 13:08:02,957 [pN:main,p:73244,tN:MainThread] Adding inherited display application 'rviewer_interval' to datatype 'bed12' galaxy.datatypes.registry DEBUG 2024-02-23 13:08:02,957 [pN:main,p:73244,tN:MainThread] Adding inherited display application 'igv_interval_as_bed' to datatype 'bed12' galaxy.datatypes.registry DEBUG 2024-02-23 13:08:02,957 [pN:main,p:73244,tN:MainThread] Adding inherited display application 'ensembl_interval' to datatype 'probed' galaxy.datatypes.registry DEBUG 2024-02-23 13:08:02,957 [pN:main,p:73244,tN:MainThread] Adding inherited display application 'gbrowse_interval_as_bed' to datatype 'probed' galaxy.datatypes.registry DEBUG 2024-02-23 13:08:02,957 [pN:main,p:73244,tN:MainThread] Adding inherited display application 'rviewer_interval' to datatype 'probed' galaxy.datatypes.registry DEBUG 2024-02-23 13:08:02,957 [pN:main,p:73244,tN:MainThread] Adding inherited display application 'igv_interval_as_bed' to datatype 'probed' galaxy.datatypes.registry DEBUG 2024-02-23 13:08:02,958 [pN:main,p:73244,tN:MainThread] Adding inherited display application 'ensembl_interval' to datatype 'chrint' galaxy.datatypes.registry DEBUG 2024-02-23 13:08:02,958 [pN:main,p:73244,tN:MainThread] Adding inherited display application 'gbrowse_interval_as_bed' to datatype 'chrint' galaxy.datatypes.registry DEBUG 2024-02-23 13:08:02,958 [pN:main,p:73244,tN:MainThread] Adding inherited display application 'rviewer_interval' to datatype 'chrint' galaxy.datatypes.registry DEBUG 2024-02-23 13:08:02,958 [pN:main,p:73244,tN:MainThread] Adding inherited display application 'igv_interval_as_bed' to datatype 'chrint' galaxy.datatypes.registry DEBUG 2024-02-23 13:08:02,958 [pN:main,p:73244,tN:MainThread] Adding inherited display application 'igv_fasta' to datatype 'fasta.gz' galaxy.datatypes.registry DEBUG 2024-02-23 13:08:02,958 [pN:main,p:73244,tN:MainThread] Adding inherited display application 'ensembl_gff' to datatype 'gff3' galaxy.datatypes.registry DEBUG 2024-02-23 13:08:02,958 [pN:main,p:73244,tN:MainThread] Adding inherited display application 'igv_gff' to datatype 'gff3' galaxy.datatypes.registry DEBUG 2024-02-23 13:08:02,958 [pN:main,p:73244,tN:MainThread] Adding inherited display application 'ensembl_gff' to datatype 'gff3.gz' galaxy.datatypes.registry DEBUG 2024-02-23 13:08:02,958 [pN:main,p:73244,tN:MainThread] Adding inherited display application 'igv_gff' to datatype 'gff3.gz' galaxy.datatypes.registry DEBUG 2024-02-23 13:08:02,958 [pN:main,p:73244,tN:MainThread] Adding inherited display application 'ensembl_gff' to datatype 'gff3.bz2' galaxy.datatypes.registry DEBUG 2024-02-23 13:08:02,958 [pN:main,p:73244,tN:MainThread] Adding inherited display application 'igv_gff' to datatype 'gff3.bz2' galaxy.datatypes.registry DEBUG 2024-02-23 13:08:02,958 [pN:main,p:73244,tN:MainThread] Adding inherited display application 'ensembl_gff' to datatype 'gtf' galaxy.datatypes.registry DEBUG 2024-02-23 13:08:02,958 [pN:main,p:73244,tN:MainThread] Adding inherited display application 'igv_gff' to datatype 'gtf' galaxy.datatypes.registry DEBUG 2024-02-23 13:08:02,959 [pN:main,p:73244,tN:MainThread] Adding inherited display application 'ensembl_interval' to datatype 'encodepeak' galaxy.datatypes.registry DEBUG 2024-02-23 13:08:02,959 [pN:main,p:73244,tN:MainThread] Adding inherited display application 'gbrowse_interval_as_bed' to datatype 'encodepeak' galaxy.datatypes.registry DEBUG 2024-02-23 13:08:02,959 [pN:main,p:73244,tN:MainThread] Adding inherited display application 'rviewer_interval' to datatype 'encodepeak' galaxy.datatypes.registry DEBUG 2024-02-23 13:08:02,959 [pN:main,p:73244,tN:MainThread] Adding inherited display application 'igv_interval_as_bed' to datatype 'encodepeak' galaxy.datatypes.registry DEBUG 2024-02-23 13:08:02,960 [pN:main,p:73244,tN:MainThread] Adding inherited display application 'igv_fasta' to datatype 'sequences' galaxy.datatypes.registry DEBUG 2024-02-23 13:08:02,960 [pN:main,p:73244,tN:MainThread] Adding inherited display application 'ensembl_interval' to datatype 'interval_tabix.gz' galaxy.datatypes.registry DEBUG 2024-02-23 13:08:02,960 [pN:main,p:73244,tN:MainThread] Adding inherited display application 'gbrowse_interval_as_bed' to datatype 'interval_tabix.gz' galaxy.datatypes.registry DEBUG 2024-02-23 13:08:02,960 [pN:main,p:73244,tN:MainThread] Adding inherited display application 'rviewer_interval' to datatype 'interval_tabix.gz' galaxy.datatypes.registry DEBUG 2024-02-23 13:08:02,960 [pN:main,p:73244,tN:MainThread] Adding inherited display application 'igv_interval_as_bed' to datatype 'interval_tabix.gz' galaxy.datatypes.registry DEBUG 2024-02-23 13:08:02,960 [pN:main,p:73244,tN:MainThread] Adding inherited display application 'ensembl_interval' to datatype 'juicer_medium_tabix.gz' galaxy.datatypes.registry DEBUG 2024-02-23 13:08:02,960 [pN:main,p:73244,tN:MainThread] Adding inherited display application 'gbrowse_interval_as_bed' to datatype 'juicer_medium_tabix.gz' galaxy.datatypes.registry DEBUG 2024-02-23 13:08:02,960 [pN:main,p:73244,tN:MainThread] Adding inherited display application 'rviewer_interval' to datatype 'juicer_medium_tabix.gz' galaxy.datatypes.registry DEBUG 2024-02-23 13:08:02,960 [pN:main,p:73244,tN:MainThread] Adding inherited display application 'igv_interval_as_bed' to datatype 'juicer_medium_tabix.gz' galaxy.datatypes.registry DEBUG 2024-02-23 13:08:02,960 [pN:main,p:73244,tN:MainThread] Adding inherited display application 'ensembl_interval' to datatype 'bed_tabix.gz' galaxy.datatypes.registry DEBUG 2024-02-23 13:08:02,960 [pN:main,p:73244,tN:MainThread] Adding inherited display application 'gbrowse_interval_as_bed' to datatype 'bed_tabix.gz' galaxy.datatypes.registry DEBUG 2024-02-23 13:08:02,960 [pN:main,p:73244,tN:MainThread] Adding inherited display application 'rviewer_interval' to datatype 'bed_tabix.gz' galaxy.datatypes.registry DEBUG 2024-02-23 13:08:02,960 [pN:main,p:73244,tN:MainThread] Adding inherited display application 'igv_interval_as_bed' to datatype 'bed_tabix.gz' galaxy.datatypes.registry DEBUG 2024-02-23 13:08:02,960 [pN:main,p:73244,tN:MainThread] Adding inherited display application 'ensembl_interval' to datatype 'gff_tabix.gz' galaxy.datatypes.registry DEBUG 2024-02-23 13:08:02,960 [pN:main,p:73244,tN:MainThread] Adding inherited display application 'gbrowse_interval_as_bed' to datatype 'gff_tabix.gz' galaxy.datatypes.registry DEBUG 2024-02-23 13:08:02,960 [pN:main,p:73244,tN:MainThread] Adding inherited display application 'rviewer_interval' to datatype 'gff_tabix.gz' galaxy.datatypes.registry DEBUG 2024-02-23 13:08:02,960 [pN:main,p:73244,tN:MainThread] Adding inherited display application 'igv_interval_as_bed' to datatype 'gff_tabix.gz' galaxy.datatypes.registry DEBUG 2024-02-23 13:08:02,962 [pN:main,p:73244,tN:MainThread] Adding inherited display application 'igv_fasta' to datatype 'mothur.align' galaxy.datatypes.registry DEBUG 2024-02-23 13:08:02,964 [pN:main,p:73244,tN:MainThread] Loaded converter: CONVERTER_uncompressed_to_gz galaxy.datatypes.registry DEBUG 2024-02-23 13:08:02,965 [pN:main,p:73244,tN:MainThread] Loaded converter: CONVERTER_gz_to_uncompressed galaxy.datatypes.registry DEBUG 2024-02-23 13:08:02,967 [pN:main,p:73244,tN:MainThread] Loaded converter: CONVERTER_uncompressed_to_gz galaxy.datatypes.registry DEBUG 2024-02-23 13:08:02,968 [pN:main,p:73244,tN:MainThread] Loaded converter: CONVERTER_gz_to_uncompressed galaxy.datatypes.registry DEBUG 2024-02-23 13:08:02,970 [pN:main,p:73244,tN:MainThread] Loaded converter: CONVERTER_uncompressed_to_gz galaxy.datatypes.registry DEBUG 2024-02-23 13:08:02,971 [pN:main,p:73244,tN:MainThread] Loaded converter: CONVERTER_gz_to_uncompressed galaxy.datatypes.registry DEBUG 2024-02-23 13:08:02,972 [pN:main,p:73244,tN:MainThread] Loaded converter: CONVERTER_Bam_Bai_0 galaxy.datatypes.registry DEBUG 2024-02-23 13:08:02,973 [pN:main,p:73244,tN:MainThread] Loaded converter: CONVERTER_bam_to_bigwig_0 galaxy.datatypes.registry DEBUG 2024-02-23 13:08:02,974 [pN:main,p:73244,tN:MainThread] Loaded converter: CONVERTER_bam_to_qname_sorted_bam galaxy.datatypes.registry DEBUG 2024-02-23 13:08:02,975 [pN:main,p:73244,tN:MainThread] Loaded converter: CONVERTER_bam_to_bigwig_0 galaxy.datatypes.registry DEBUG 2024-02-23 13:08:02,976 [pN:main,p:73244,tN:MainThread] Loaded converter: CONVERTER_bam_to_coodinate_sorted_bam galaxy.datatypes.registry DEBUG 2024-02-23 13:08:02,977 [pN:main,p:73244,tN:MainThread] Loaded converter: CONVERTER_bam_to_qname_sorted_bam galaxy.datatypes.registry DEBUG 2024-02-23 13:08:02,978 [pN:main,p:73244,tN:MainThread] Loaded converter: CONVERTER_cram_to_bam_0 galaxy.datatypes.registry DEBUG 2024-02-23 13:08:02,979 [pN:main,p:73244,tN:MainThread] Loaded converter: CONVERTER_bed_to_gff_0 galaxy.datatypes.registry DEBUG 2024-02-23 13:08:02,981 [pN:main,p:73244,tN:MainThread] Loaded converter: CONVERTER_interval_to_bgzip_0 galaxy.datatypes.registry DEBUG 2024-02-23 13:08:02,983 [pN:main,p:73244,tN:MainThread] Loaded converter: CONVERTER_interval_to_tabix_0 galaxy.datatypes.registry DEBUG 2024-02-23 13:08:02,984 [pN:main,p:73244,tN:MainThread] Loaded converter: CONVERTER_bed_gff_or_vcf_to_bigwig_0 galaxy.datatypes.registry DEBUG 2024-02-23 13:08:02,985 [pN:main,p:73244,tN:MainThread] Loaded converter: CONVERTER_bed_to_fli_0 galaxy.datatypes.registry DEBUG 2024-02-23 13:08:02,986 [pN:main,p:73244,tN:MainThread] Loaded converter: CONVERTER_bedgraph_to_bigwig galaxy.datatypes.registry DEBUG 2024-02-23 13:08:02,987 [pN:main,p:73244,tN:MainThread] Loaded converter: CONVERTER_len_to_linecount galaxy.datatypes.registry DEBUG 2024-02-23 13:08:02,988 [pN:main,p:73244,tN:MainThread] Loaded converter: CONVERTER_parquet_to_csv galaxy.datatypes.registry DEBUG 2024-02-23 13:08:02,990 [pN:main,p:73244,tN:MainThread] Loaded converter: bigwigtowig galaxy.datatypes.registry DEBUG 2024-02-23 13:08:02,993 [pN:main,p:73244,tN:MainThread] Loaded converter: CONVERTER_interval_to_bgzip_0 galaxy.datatypes.registry DEBUG 2024-02-23 13:08:02,995 [pN:main,p:73244,tN:MainThread] Loaded converter: CONVERTER_interval_to_tabix_0 galaxy.datatypes.registry DEBUG 2024-02-23 13:08:02,996 [pN:main,p:73244,tN:MainThread] Loaded converter: CONVERTER_bed_gff_or_vcf_to_bigwig_0 galaxy.datatypes.registry DEBUG 2024-02-23 13:08:02,997 [pN:main,p:73244,tN:MainThread] Loaded converter: csv_to_tabular galaxy.datatypes.registry DEBUG 2024-02-23 13:08:02,998 [pN:main,p:73244,tN:MainThread] Loaded converter: tabular_to_csv galaxy.datatypes.registry DEBUG 2024-02-23 13:08:02,999 [pN:main,p:73244,tN:MainThread] Loaded converter: CONVERTER_fasta_to_tabular galaxy.datatypes.registry DEBUG 2024-02-23 13:08:03,000 [pN:main,p:73244,tN:MainThread] Loaded converter: CONVERTER_fasta_to_bowtie_base_index galaxy.datatypes.registry DEBUG 2024-02-23 13:08:03,001 [pN:main,p:73244,tN:MainThread] Loaded converter: CONVERTER_fasta_to_bowtie_color_index galaxy.datatypes.registry DEBUG 2024-02-23 13:08:03,002 [pN:main,p:73244,tN:MainThread] Loaded converter: CONVERTER_fasta_to_2bit galaxy.datatypes.registry DEBUG 2024-02-23 13:08:03,003 [pN:main,p:73244,tN:MainThread] Loaded converter: CONVERTER_fasta_to_len galaxy.datatypes.registry DEBUG 2024-02-23 13:08:03,004 [pN:main,p:73244,tN:MainThread] Loaded converter: CONVERTER_fasta_to_fai galaxy.datatypes.registry DEBUG 2024-02-23 13:08:03,005 [pN:main,p:73244,tN:MainThread] Loaded converter: CONVERTER_uncompressed_to_gz galaxy.datatypes.registry DEBUG 2024-02-23 13:08:03,006 [pN:main,p:73244,tN:MainThread] Loaded converter: CONVERTER_gz_to_uncompressed galaxy.datatypes.registry DEBUG 2024-02-23 13:08:03,007 [pN:main,p:73244,tN:MainThread] Loaded converter: CONVERTER_fastq_to_fqtoc0 galaxy.datatypes.registry DEBUG 2024-02-23 13:08:03,009 [pN:main,p:73244,tN:MainThread] Loaded converter: CONVERTER_uncompressed_to_gz galaxy.datatypes.registry DEBUG 2024-02-23 13:08:03,010 [pN:main,p:73244,tN:MainThread] Loaded converter: CONVERTER_gz_to_uncompressed galaxy.datatypes.registry DEBUG 2024-02-23 13:08:03,011 [pN:main,p:73244,tN:MainThread] Loaded converter: CONVERTER_bz2_to_uncompressed galaxy.datatypes.registry DEBUG 2024-02-23 13:08:03,012 [pN:main,p:73244,tN:MainThread] Loaded converter: CONVERTER_fastq_to_fqtoc0 galaxy.datatypes.registry DEBUG 2024-02-23 13:08:03,014 [pN:main,p:73244,tN:MainThread] Loaded converter: CONVERTER_uncompressed_to_gz galaxy.datatypes.registry DEBUG 2024-02-23 13:08:03,015 [pN:main,p:73244,tN:MainThread] Loaded converter: CONVERTER_gz_to_uncompressed galaxy.datatypes.registry DEBUG 2024-02-23 13:08:03,016 [pN:main,p:73244,tN:MainThread] Loaded converter: CONVERTER_bz2_to_uncompressed galaxy.datatypes.registry DEBUG 2024-02-23 13:08:03,017 [pN:main,p:73244,tN:MainThread] Loaded converter: CONVERTER_fastq_to_fqtoc0 galaxy.datatypes.registry DEBUG 2024-02-23 13:08:03,019 [pN:main,p:73244,tN:MainThread] Loaded converter: CONVERTER_uncompressed_to_gz galaxy.datatypes.registry DEBUG 2024-02-23 13:08:03,020 [pN:main,p:73244,tN:MainThread] Loaded converter: CONVERTER_gz_to_uncompressed galaxy.datatypes.registry DEBUG 2024-02-23 13:08:03,021 [pN:main,p:73244,tN:MainThread] Loaded converter: CONVERTER_bz2_to_uncompressed galaxy.datatypes.registry DEBUG 2024-02-23 13:08:03,022 [pN:main,p:73244,tN:MainThread] Loaded converter: CONVERTER_fastq_to_fqtoc0 galaxy.datatypes.registry DEBUG 2024-02-23 13:08:03,023 [pN:main,p:73244,tN:MainThread] Loaded converter: CONVERTER_uncompressed_to_gz galaxy.datatypes.registry DEBUG 2024-02-23 13:08:03,025 [pN:main,p:73244,tN:MainThread] Loaded converter: CONVERTER_gz_to_uncompressed galaxy.datatypes.registry DEBUG 2024-02-23 13:08:03,026 [pN:main,p:73244,tN:MainThread] Loaded converter: CONVERTER_bz2_to_uncompressed galaxy.datatypes.registry DEBUG 2024-02-23 13:08:03,027 [pN:main,p:73244,tN:MainThread] Loaded converter: CONVERTER_fastq_to_fqtoc0 galaxy.datatypes.registry DEBUG 2024-02-23 13:08:03,029 [pN:main,p:73244,tN:MainThread] Loaded converter: CONVERTER_uncompressed_to_gz galaxy.datatypes.registry DEBUG 2024-02-23 13:08:03,030 [pN:main,p:73244,tN:MainThread] Loaded converter: CONVERTER_gz_to_uncompressed galaxy.datatypes.registry DEBUG 2024-02-23 13:08:03,031 [pN:main,p:73244,tN:MainThread] Loaded converter: CONVERTER_bz2_to_uncompressed galaxy.datatypes.registry DEBUG 2024-02-23 13:08:03,032 [pN:main,p:73244,tN:MainThread] Loaded converter: CONVERTER_gff_to_bed_0 galaxy.datatypes.registry DEBUG 2024-02-23 13:08:03,033 [pN:main,p:73244,tN:MainThread] Loaded converter: CONVERTER_gff_to_interval_index_0 galaxy.datatypes.registry DEBUG 2024-02-23 13:08:03,034 [pN:main,p:73244,tN:MainThread] Loaded converter: CONVERTER_bed_gff_or_vcf_to_bigwig_0 galaxy.datatypes.registry DEBUG 2024-02-23 13:08:03,035 [pN:main,p:73244,tN:MainThread] Loaded converter: CONVERTER_gff_to_fli_0 galaxy.datatypes.registry DEBUG 2024-02-23 13:08:03,038 [pN:main,p:73244,tN:MainThread] Loaded converter: CONVERTER_interval_to_bgzip_0 galaxy.datatypes.registry DEBUG 2024-02-23 13:08:03,040 [pN:main,p:73244,tN:MainThread] Loaded converter: CONVERTER_interval_to_tabix_0 galaxy.datatypes.registry DEBUG 2024-02-23 13:08:03,041 [pN:main,p:73244,tN:MainThread] Loaded converter: CONVERTER_uncompressed_to_gz galaxy.datatypes.registry DEBUG 2024-02-23 13:08:03,042 [pN:main,p:73244,tN:MainThread] Loaded converter: CONVERTER_gz_to_uncompressed galaxy.datatypes.registry DEBUG 2024-02-23 13:08:03,043 [pN:main,p:73244,tN:MainThread] Loaded converter: CONVERTER_bz2_to_uncompressed galaxy.datatypes.registry DEBUG 2024-02-23 13:08:03,044 [pN:main,p:73244,tN:MainThread] Loaded converter: CONVERTER_gff_to_interval_index_0 galaxy.datatypes.registry DEBUG 2024-02-23 13:08:03,046 [pN:main,p:73244,tN:MainThread] Loaded converter: CONVERTER_bed_gff_or_vcf_to_bigwig_0 galaxy.datatypes.registry DEBUG 2024-02-23 13:08:03,047 [pN:main,p:73244,tN:MainThread] Loaded converter: CONVERTER_interval_to_bed_0 galaxy.datatypes.registry DEBUG 2024-02-23 13:08:03,048 [pN:main,p:73244,tN:MainThread] Loaded converter: CONVERTER_interval_to_bedstrict_0 galaxy.datatypes.registry DEBUG 2024-02-23 13:08:03,049 [pN:main,p:73244,tN:MainThread] Loaded converter: CONVERTER_interval_to_bed6_0 galaxy.datatypes.registry DEBUG 2024-02-23 13:08:03,052 [pN:main,p:73244,tN:MainThread] Loaded converter: CONVERTER_interval_to_bed12_0 galaxy.datatypes.registry DEBUG 2024-02-23 13:08:03,055 [pN:main,p:73244,tN:MainThread] Loaded converter: CONVERTER_interval_to_bgzip_0 galaxy.datatypes.registry DEBUG 2024-02-23 13:08:03,057 [pN:main,p:73244,tN:MainThread] Loaded converter: CONVERTER_interval_to_tabix_0 galaxy.datatypes.registry DEBUG 2024-02-23 13:08:03,058 [pN:main,p:73244,tN:MainThread] Loaded converter: CONVERTER_interval_to_bigwig_0 galaxy.datatypes.registry DEBUG 2024-02-23 13:08:03,059 [pN:main,p:73244,tN:MainThread] Loaded converter: CONVERTER_picard_interval_list_to_bed6 galaxy.datatypes.registry DEBUG 2024-02-23 13:08:03,060 [pN:main,p:73244,tN:MainThread] Loaded converter: CONVERTER_tar_to_directory galaxy.datatypes.registry DEBUG 2024-02-23 13:08:03,061 [pN:main,p:73244,tN:MainThread] Loaded converter: CONVERTER_uncompressed_to_gz galaxy.datatypes.registry DEBUG 2024-02-23 13:08:03,063 [pN:main,p:73244,tN:MainThread] Loaded converter: CONVERTER_gz_to_uncompressed galaxy.datatypes.registry DEBUG 2024-02-23 13:08:03,064 [pN:main,p:73244,tN:MainThread] Loaded converter: CONVERTER_uncompressed_to_gz galaxy.datatypes.registry DEBUG 2024-02-23 13:08:03,065 [pN:main,p:73244,tN:MainThread] Loaded converter: CONVERTER_gz_to_uncompressed galaxy.datatypes.registry DEBUG 2024-02-23 13:08:03,067 [pN:main,p:73244,tN:MainThread] Loaded converter: CONVERTER_uncompressed_to_gz galaxy.datatypes.registry DEBUG 2024-02-23 13:08:03,068 [pN:main,p:73244,tN:MainThread] Loaded converter: CONVERTER_gz_to_uncompressed galaxy.datatypes.registry DEBUG 2024-02-23 13:08:03,069 [pN:main,p:73244,tN:MainThread] Loaded converter: CONVERTER_maf_to_fasta_0 galaxy.datatypes.registry DEBUG 2024-02-23 13:08:03,070 [pN:main,p:73244,tN:MainThread] Loaded converter: CONVERTER_maf_to_interval_0 galaxy.datatypes.registry DEBUG 2024-02-23 13:08:03,072 [pN:main,p:73244,tN:MainThread] Loaded converter: CONVERTER_interval_to_tabix_0 galaxy.datatypes.registry DEBUG 2024-02-23 13:08:03,075 [pN:main,p:73244,tN:MainThread] Loaded converter: CONVERTER_interval_to_bgzip_0 galaxy.datatypes.registry DEBUG 2024-02-23 13:08:03,076 [pN:main,p:73244,tN:MainThread] Loaded converter: CONVERTER_bed_gff_or_vcf_to_bigwig_0 galaxy.datatypes.registry DEBUG 2024-02-23 13:08:03,079 [pN:main,p:73244,tN:MainThread] Loaded converter: CONVERTER_interval_to_bgzip_0 galaxy.datatypes.registry DEBUG 2024-02-23 13:08:03,081 [pN:main,p:73244,tN:MainThread] Loaded converter: CONVERTER_interval_to_tabix_0 galaxy.datatypes.registry DEBUG 2024-02-23 13:08:03,082 [pN:main,p:73244,tN:MainThread] Loaded converter: CONVERTER_sam_to_unsorted_bam galaxy.datatypes.registry DEBUG 2024-02-23 13:08:03,083 [pN:main,p:73244,tN:MainThread] Loaded converter: CONVERTER_bam_to_coodinate_sorted_bam galaxy.datatypes.registry DEBUG 2024-02-23 13:08:03,084 [pN:main,p:73244,tN:MainThread] Loaded converter: CONVERTER_bam_to_qname_sorted_bam galaxy.datatypes.registry DEBUG 2024-02-23 13:08:03,085 [pN:main,p:73244,tN:MainThread] Loaded converter: CONVERTER_sam_to_bigwig_0 galaxy.datatypes.registry DEBUG 2024-02-23 13:08:03,087 [pN:main,p:73244,tN:MainThread] Loaded converter: tabular_to_dbnsfp galaxy.datatypes.registry DEBUG 2024-02-23 13:08:03,088 [pN:main,p:73244,tN:MainThread] Loaded converter: tabular_to_csv galaxy.datatypes.registry DEBUG 2024-02-23 13:08:03,090 [pN:main,p:73244,tN:MainThread] Loaded converter: CONVERTER_uncompressed_to_gz galaxy.datatypes.registry DEBUG 2024-02-23 13:08:03,091 [pN:main,p:73244,tN:MainThread] Loaded converter: CONVERTER_gz_to_uncompressed galaxy.datatypes.registry DEBUG 2024-02-23 13:08:03,093 [pN:main,p:73244,tN:MainThread] Loaded converter: CONVERTER_interval_to_bgzip_0 galaxy.datatypes.registry DEBUG 2024-02-23 13:08:03,094 [pN:main,p:73244,tN:MainThread] Loaded converter: CONVERTER_vcf_to_vcf_bgzip_0 galaxy.datatypes.registry DEBUG 2024-02-23 13:08:03,097 [pN:main,p:73244,tN:MainThread] Loaded converter: CONVERTER_interval_to_tabix_0 galaxy.datatypes.registry DEBUG 2024-02-23 13:08:03,098 [pN:main,p:73244,tN:MainThread] Loaded converter: CONVERTER_bed_gff_or_vcf_to_bigwig_0 galaxy.datatypes.registry DEBUG 2024-02-23 13:08:03,099 [pN:main,p:73244,tN:MainThread] Loaded converter: CONVERTER_uncompressed_to_gz galaxy.datatypes.registry DEBUG 2024-02-23 13:08:03,101 [pN:main,p:73244,tN:MainThread] Loaded converter: CONVERTER_bcf_uncompressed_to_bcf galaxy.datatypes.registry DEBUG 2024-02-23 13:08:03,102 [pN:main,p:73244,tN:MainThread] Loaded converter: CONVERTER_bcf_uncompressed_to_bcf galaxy.datatypes.registry DEBUG 2024-02-23 13:08:03,103 [pN:main,p:73244,tN:MainThread] Loaded converter: CONVERTER_wig_to_bigwig galaxy.datatypes.registry DEBUG 2024-02-23 13:08:03,104 [pN:main,p:73244,tN:MainThread] Loaded converter: CONVERTER_wiggle_to_interval_0 galaxy.datatypes.registry DEBUG 2024-02-23 13:08:03,105 [pN:main,p:73244,tN:MainThread] Loaded converter: CONVERTER_vcf_bgzip_to_tabix_0 galaxy.datatypes.registry DEBUG 2024-02-23 13:08:03,106 [pN:main,p:73244,tN:MainThread] Loaded converter: CONVERTER_gz_to_uncompressed galaxy.datatypes.registry DEBUG 2024-02-23 13:08:03,107 [pN:main,p:73244,tN:MainThread] Loaded converter: lped2fpedconvert galaxy.datatypes.registry DEBUG 2024-02-23 13:08:03,108 [pN:main,p:73244,tN:MainThread] Loaded converter: lped2pbedconvert galaxy.datatypes.registry DEBUG 2024-02-23 13:08:03,109 [pN:main,p:73244,tN:MainThread] Loaded converter: pbed2lpedconvert galaxy.datatypes.registry DEBUG 2024-02-23 13:08:03,109 [pN:main,p:73244,tN:MainThread] Loaded converter: pbed2ldindepconvert galaxy.datatypes.registry DEBUG 2024-02-23 13:08:03,111 [pN:main,p:73244,tN:MainThread] Loaded converter: CONVERTER_uncompressed_to_gz galaxy.datatypes.registry DEBUG 2024-02-23 13:08:03,112 [pN:main,p:73244,tN:MainThread] Loaded converter: CONVERTER_gz_to_uncompressed galaxy.datatypes.registry DEBUG 2024-02-23 13:08:03,114 [pN:main,p:73244,tN:MainThread] Loaded converter: CONVERTER_biom galaxy.datatypes.registry DEBUG 2024-02-23 13:08:03,115 [pN:main,p:73244,tN:MainThread] Loaded converter: CONVERTER_biom galaxy.datatypes.registry DEBUG 2024-02-23 13:08:03,120 [pN:main,p:73244,tN:MainThread] Loaded converter: CONVERTER_molecules galaxy.datatypes.registry DEBUG 2024-02-23 13:08:03,125 [pN:main,p:73244,tN:MainThread] Loaded converter: CONVERTER_molecules galaxy.datatypes.registry DEBUG 2024-02-23 13:08:03,130 [pN:main,p:73244,tN:MainThread] Loaded converter: CONVERTER_molecules galaxy.datatypes.registry DEBUG 2024-02-23 13:08:03,131 [pN:main,p:73244,tN:MainThread] Loaded converter: CONVERTER_SMILES_to_MOL galaxy.datatypes.registry DEBUG 2024-02-23 13:08:03,136 [pN:main,p:73244,tN:MainThread] Loaded converter: CONVERTER_molecules galaxy.datatypes.registry DEBUG 2024-02-23 13:08:03,137 [pN:main,p:73244,tN:MainThread] Loaded converter: CONVERTER_smiles_to_smiles galaxy.datatypes.registry DEBUG 2024-02-23 13:08:03,142 [pN:main,p:73244,tN:MainThread] Loaded converter: CONVERTER_molecules galaxy.datatypes.registry DEBUG 2024-02-23 13:08:03,147 [pN:main,p:73244,tN:MainThread] Loaded converter: CONVERTER_molecules galaxy.datatypes.registry DEBUG 2024-02-23 13:08:03,152 [pN:main,p:73244,tN:MainThread] Loaded converter: CONVERTER_molecules galaxy.datatypes.registry DEBUG 2024-02-23 13:08:03,157 [pN:main,p:73244,tN:MainThread] Loaded converter: CONVERTER_molecules galaxy.datatypes.registry DEBUG 2024-02-23 13:08:03,161 [pN:main,p:73244,tN:MainThread] Loaded converter: CONVERTER_molecules galaxy.datatypes.registry DEBUG 2024-02-23 13:08:03,166 [pN:main,p:73244,tN:MainThread] Loaded converter: CONVERTER_molecules galaxy.datatypes.registry DEBUG 2024-02-23 13:08:03,167 [pN:main,p:73244,tN:MainThread] Loaded converter: CONVERTER_inchi_to_mol galaxy.datatypes.registry DEBUG 2024-02-23 13:08:03,172 [pN:main,p:73244,tN:MainThread] Loaded converter: CONVERTER_molecules galaxy.datatypes.registry DEBUG 2024-02-23 13:08:03,177 [pN:main,p:73244,tN:MainThread] Loaded converter: CONVERTER_molecules galaxy.datatypes.registry DEBUG 2024-02-23 13:08:03,182 [pN:main,p:73244,tN:MainThread] Loaded converter: CONVERTER_molecules galaxy.datatypes.registry DEBUG 2024-02-23 13:08:03,187 [pN:main,p:73244,tN:MainThread] Loaded converter: CONVERTER_molecules galaxy.datatypes.registry DEBUG 2024-02-23 13:08:03,192 [pN:main,p:73244,tN:MainThread] Loaded converter: CONVERTER_molecules galaxy.datatypes.registry DEBUG 2024-02-23 13:08:03,197 [pN:main,p:73244,tN:MainThread] Loaded converter: CONVERTER_molecules galaxy.datatypes.registry DEBUG 2024-02-23 13:08:03,201 [pN:main,p:73244,tN:MainThread] Loaded converter: CONVERTER_molecules galaxy.datatypes.registry DEBUG 2024-02-23 13:08:03,206 [pN:main,p:73244,tN:MainThread] Loaded converter: CONVERTER_molecules galaxy.datatypes.registry DEBUG 2024-02-23 13:08:03,211 [pN:main,p:73244,tN:MainThread] Loaded converter: CONVERTER_molecules galaxy.datatypes.registry DEBUG 2024-02-23 13:08:03,216 [pN:main,p:73244,tN:MainThread] Loaded converter: CONVERTER_molecules galaxy.datatypes.registry DEBUG 2024-02-23 13:08:03,217 [pN:main,p:73244,tN:MainThread] Loaded converter: CONVERTER_mol2_to_mol galaxy.datatypes.registry DEBUG 2024-02-23 13:08:03,222 [pN:main,p:73244,tN:MainThread] Loaded converter: CONVERTER_molecules galaxy.datatypes.registry DEBUG 2024-02-23 13:08:03,224 [pN:main,p:73244,tN:MainThread] Loaded converter: CONVERTER_cml_to_smiles galaxy.datatypes.registry DEBUG 2024-02-23 13:08:03,229 [pN:main,p:73244,tN:MainThread] Loaded converter: CONVERTER_molecules galaxy.datatypes.registry DEBUG 2024-02-23 13:08:03,233 [pN:main,p:73244,tN:MainThread] Loaded converter: CONVERTER_molecules galaxy.datatypes.registry DEBUG 2024-02-23 13:08:03,239 [pN:main,p:73244,tN:MainThread] Loaded converter: CONVERTER_molecules galaxy.datatypes.registry DEBUG 2024-02-23 13:08:03,240 [pN:main,p:73244,tN:MainThread] Loaded converter: CONVERTER_Pdb_to_Gro_0 galaxy.datatypes.registry DEBUG 2024-02-23 13:08:03,242 [pN:main,p:73244,tN:MainThread] Loaded converter: CONVERTER_mdconvert galaxy.datatypes.registry DEBUG 2024-02-23 13:08:03,244 [pN:main,p:73244,tN:MainThread] Loaded converter: CONVERTER_mdconvert galaxy.datatypes.registry DEBUG 2024-02-23 13:08:03,245 [pN:main,p:73244,tN:MainThread] Loaded converter: CONVERTER_mdconvert galaxy.datatypes.registry DEBUG 2024-02-23 13:08:03,248 [pN:main,p:73244,tN:MainThread] Loaded converter: CONVERTER_mdconvert galaxy.datatypes.registry DEBUG 2024-02-23 13:08:03,250 [pN:main,p:73244,tN:MainThread] Loaded converter: CONVERTER_mdconvert galaxy.datatypes.registry DEBUG 2024-02-23 13:08:03,251 [pN:main,p:73244,tN:MainThread] Loaded converter: CONVERTER_mdconvert galaxy.datatypes.registry DEBUG 2024-02-23 13:08:03,253 [pN:main,p:73244,tN:MainThread] Loaded converter: CONVERTER_Gro_to_Pdb_0 galaxy.datatypes.registry DEBUG 2024-02-23 13:08:03,254 [pN:main,p:73244,tN:MainThread] Loaded converter: CONVERTER_ref_to_seq_taxomony galaxy.datatypes.registry DEBUG 2024-02-23 13:08:03,255 [pN:main,p:73244,tN:MainThread] Loaded converter: CONVERTER_neostorezip_to_neostore galaxy.datatypes.registry DEBUG 2024-02-23 13:08:03,256 [pN:main,p:73244,tN:MainThread] Loaded external metadata tool: __SET_METADATA__ galaxy.tools.special_tools DEBUG 2024-02-23 13:08:03,258 [pN:main,p:73244,tN:MainThread] Loaded history export tool: __EXPORT_HISTORY__ galaxy.tools.special_tools DEBUG 2024-02-23 13:08:03,259 [pN:main,p:73244,tN:MainThread] Loaded history export to uri tool: __EXPORT_HISTORY_TO_URI__ galaxy.tools.special_tools DEBUG 2024-02-23 13:08:03,260 [pN:main,p:73244,tN:MainThread] Loaded history import tool: __IMPORT_HISTORY__ galaxy.tools.special_tools DEBUG 2024-02-23 13:08:03,261 [pN:main,p:73244,tN:MainThread] Loaded data fetch tool: __DATA_FETCH__ galaxy.visualization.plugins.registry INFO 2024-02-23 13:08:03,262 [pN:main,p:73244,tN:MainThread] VisualizationsRegistry, loaded plugin: PCA_3Dplot galaxy.visualization.plugins.registry INFO 2024-02-23 13:08:03,263 [pN:main,p:73244,tN:MainThread] VisualizationsRegistry, loaded plugin: aequatus galaxy.visualization.plugins.registry INFO 2024-02-23 13:08:03,263 [pN:main,p:73244,tN:MainThread] VisualizationsRegistry, loaded plugin: annotate_image galaxy.visualization.plugins.config_parser INFO 2024-02-23 13:08:03,264 [pN:main,p:73244,tN:MainThread] template syntax is deprecated: use entry_point instead galaxy.visualization.plugins.registry INFO 2024-02-23 13:08:03,265 [pN:main,p:73244,tN:MainThread] VisualizationsRegistry, loaded plugin: chiraviz galaxy.visualization.plugins.config_parser INFO 2024-02-23 13:08:03,266 [pN:main,p:73244,tN:MainThread] Visualizations plugin disabled: Circster. Skipping... galaxy.visualization.plugins.config_parser INFO 2024-02-23 13:08:03,266 [pN:main,p:73244,tN:MainThread] template syntax is deprecated: use entry_point instead galaxy.visualization.plugins.registry INFO 2024-02-23 13:08:03,266 [pN:main,p:73244,tN:MainThread] VisualizationsRegistry, loaded plugin: csg galaxy.visualization.plugins.registry INFO 2024-02-23 13:08:03,267 [pN:main,p:73244,tN:MainThread] VisualizationsRegistry, loaded plugin: cytoscape galaxy.visualization.plugins.registry INFO 2024-02-23 13:08:03,268 [pN:main,p:73244,tN:MainThread] VisualizationsRegistry, loaded plugin: drawrna galaxy.visualization.plugins.registry INFO 2024-02-23 13:08:03,269 [pN:main,p:73244,tN:MainThread] VisualizationsRegistry, loaded plugin: editor galaxy.visualization.plugins.registry INFO 2024-02-23 13:08:03,270 [pN:main,p:73244,tN:MainThread] VisualizationsRegistry, loaded plugin: example galaxy.visualization.plugins.config_parser INFO 2024-02-23 13:08:03,271 [pN:main,p:73244,tN:MainThread] template syntax is deprecated: use entry_point instead galaxy.visualization.plugins.registry INFO 2024-02-23 13:08:03,272 [pN:main,p:73244,tN:MainThread] VisualizationsRegistry, loaded plugin: fits_image_viewer galaxy.visualization.plugins.config_parser INFO 2024-02-23 13:08:03,273 [pN:main,p:73244,tN:MainThread] template syntax is deprecated: use entry_point instead galaxy.visualization.plugins.registry INFO 2024-02-23 13:08:03,273 [pN:main,p:73244,tN:MainThread] VisualizationsRegistry, loaded plugin: graphviz galaxy.visualization.plugins.registry INFO 2024-02-23 13:08:03,273 [pN:main,p:73244,tN:MainThread] VisualizationsRegistry, loaded plugin: h5web galaxy.visualization.plugins.registry INFO 2024-02-23 13:08:03,276 [pN:main,p:73244,tN:MainThread] VisualizationsRegistry, loaded plugin: heatmap_cluster galaxy.visualization.plugins.registry INFO 2024-02-23 13:08:03,278 [pN:main,p:73244,tN:MainThread] VisualizationsRegistry, loaded plugin: heatmap_default galaxy.visualization.plugins.config_parser INFO 2024-02-23 13:08:03,278 [pN:main,p:73244,tN:MainThread] template syntax is deprecated: use entry_point instead galaxy.visualization.plugins.registry INFO 2024-02-23 13:08:03,279 [pN:main,p:73244,tN:MainThread] VisualizationsRegistry, loaded plugin: hivtrace galaxy.visualization.plugins.config_parser INFO 2024-02-23 13:08:03,279 [pN:main,p:73244,tN:MainThread] template syntax is deprecated: use entry_point instead galaxy.visualization.plugins.registry INFO 2024-02-23 13:08:03,279 [pN:main,p:73244,tN:MainThread] VisualizationsRegistry, loaded plugin: hyphyvision galaxy.visualization.plugins.registry INFO 2024-02-23 13:08:03,282 [pN:main,p:73244,tN:MainThread] VisualizationsRegistry, loaded plugin: jqplot_bar galaxy.visualization.plugins.registry INFO 2024-02-23 13:08:03,284 [pN:main,p:73244,tN:MainThread] VisualizationsRegistry, loaded plugin: jqplot_box galaxy.visualization.plugins.registry INFO 2024-02-23 13:08:03,286 [pN:main,p:73244,tN:MainThread] VisualizationsRegistry, loaded plugin: jqplot_histogram galaxy.visualization.plugins.registry INFO 2024-02-23 13:08:03,288 [pN:main,p:73244,tN:MainThread] VisualizationsRegistry, loaded plugin: jqplot_line galaxy.visualization.plugins.registry INFO 2024-02-23 13:08:03,290 [pN:main,p:73244,tN:MainThread] VisualizationsRegistry, loaded plugin: jqplot_scatter galaxy.visualization.plugins.config_parser INFO 2024-02-23 13:08:03,290 [pN:main,p:73244,tN:MainThread] template syntax is deprecated: use entry_point instead galaxy.visualization.plugins.registry INFO 2024-02-23 13:08:03,291 [pN:main,p:73244,tN:MainThread] VisualizationsRegistry, loaded plugin: audio_player galaxy.visualization.plugins.config_parser INFO 2024-02-23 13:08:03,291 [pN:main,p:73244,tN:MainThread] template syntax is deprecated: use entry_point instead galaxy.visualization.plugins.registry INFO 2024-02-23 13:08:03,291 [pN:main,p:73244,tN:MainThread] VisualizationsRegistry, loaded plugin: video_player galaxy.visualization.plugins.registry INFO 2024-02-23 13:08:03,291 [pN:main,p:73244,tN:MainThread] VisualizationsRegistry, loaded plugin: msa galaxy.visualization.plugins.config_parser INFO 2024-02-23 13:08:03,293 [pN:main,p:73244,tN:MainThread] template syntax is deprecated: use entry_point instead galaxy.visualization.plugins.registry INFO 2024-02-23 13:08:03,293 [pN:main,p:73244,tN:MainThread] VisualizationsRegistry, loaded plugin: mvpapp galaxy.visualization.plugins.registry INFO 2024-02-23 13:08:03,294 [pN:main,p:73244,tN:MainThread] VisualizationsRegistry, loaded plugin: ngl galaxy.visualization.plugins.registry INFO 2024-02-23 13:08:03,295 [pN:main,p:73244,tN:MainThread] VisualizationsRegistry, loaded plugin: nora galaxy.visualization.plugins.registry INFO 2024-02-23 13:08:03,298 [pN:main,p:73244,tN:MainThread] VisualizationsRegistry, loaded plugin: nvd3_bar galaxy.visualization.plugins.registry INFO 2024-02-23 13:08:03,300 [pN:main,p:73244,tN:MainThread] VisualizationsRegistry, loaded plugin: nvd3_bar_stacked galaxy.visualization.plugins.registry INFO 2024-02-23 13:08:03,302 [pN:main,p:73244,tN:MainThread] VisualizationsRegistry, loaded plugin: nvd3_histogram galaxy.visualization.plugins.registry INFO 2024-02-23 13:08:03,304 [pN:main,p:73244,tN:MainThread] VisualizationsRegistry, loaded plugin: nvd3_histogram_discrete galaxy.visualization.plugins.registry INFO 2024-02-23 13:08:03,306 [pN:main,p:73244,tN:MainThread] VisualizationsRegistry, loaded plugin: nvd3_horizontal galaxy.visualization.plugins.registry INFO 2024-02-23 13:08:03,308 [pN:main,p:73244,tN:MainThread] VisualizationsRegistry, loaded plugin: nvd3_horizontal_stacked galaxy.visualization.plugins.registry INFO 2024-02-23 13:08:03,310 [pN:main,p:73244,tN:MainThread] VisualizationsRegistry, loaded plugin: nvd3_line galaxy.visualization.plugins.registry INFO 2024-02-23 13:08:03,312 [pN:main,p:73244,tN:MainThread] VisualizationsRegistry, loaded plugin: nvd3_line_focus galaxy.visualization.plugins.registry INFO 2024-02-23 13:08:03,313 [pN:main,p:73244,tN:MainThread] VisualizationsRegistry, loaded plugin: nvd3_pie galaxy.visualization.plugins.registry INFO 2024-02-23 13:08:03,315 [pN:main,p:73244,tN:MainThread] VisualizationsRegistry, loaded plugin: nvd3_scatter galaxy.visualization.plugins.registry INFO 2024-02-23 13:08:03,317 [pN:main,p:73244,tN:MainThread] VisualizationsRegistry, loaded plugin: nvd3_stackedarea galaxy.visualization.plugins.registry INFO 2024-02-23 13:08:03,319 [pN:main,p:73244,tN:MainThread] VisualizationsRegistry, loaded plugin: nvd3_stackedarea_full galaxy.visualization.plugins.registry INFO 2024-02-23 13:08:03,321 [pN:main,p:73244,tN:MainThread] VisualizationsRegistry, loaded plugin: nvd3_stackedarea_stream galaxy.visualization.plugins.registry INFO 2024-02-23 13:08:03,322 [pN:main,p:73244,tN:MainThread] VisualizationsRegistry, loaded plugin: openlayers galaxy.visualization.plugins.registry INFO 2024-02-23 13:08:03,323 [pN:main,p:73244,tN:MainThread] VisualizationsRegistry, loaded plugin: openseadragon galaxy.visualization.plugins.registry INFO 2024-02-23 13:08:03,324 [pN:main,p:73244,tN:MainThread] VisualizationsRegistry, loaded plugin: phylocanvas galaxy.visualization.plugins.registry INFO 2024-02-23 13:08:03,326 [pN:main,p:73244,tN:MainThread] VisualizationsRegistry, loaded plugin: phyloviz galaxy.visualization.plugins.registry INFO 2024-02-23 13:08:03,326 [pN:main,p:73244,tN:MainThread] VisualizationsRegistry, loaded plugin: pv galaxy.visualization.plugins.registry INFO 2024-02-23 13:08:03,327 [pN:main,p:73244,tN:MainThread] VisualizationsRegistry, loaded plugin: scatterplot galaxy.visualization.plugins.config_parser INFO 2024-02-23 13:08:03,328 [pN:main,p:73244,tN:MainThread] Visualizations plugin disabled: Sweepster. Skipping... galaxy.visualization.plugins.registry INFO 2024-02-23 13:08:03,328 [pN:main,p:73244,tN:MainThread] VisualizationsRegistry, loaded plugin: trackster galaxy.visualization.plugins.registry INFO 2024-02-23 13:08:03,329 [pN:main,p:73244,tN:MainThread] VisualizationsRegistry, loaded plugin: ts_visjs galaxy.visualization.plugins.config_parser INFO 2024-02-23 13:08:03,329 [pN:main,p:73244,tN:MainThread] template syntax is deprecated: use entry_point instead galaxy.visualization.plugins.registry INFO 2024-02-23 13:08:03,329 [pN:main,p:73244,tN:MainThread] VisualizationsRegistry, loaded plugin: unipept galaxy.visualization.plugins.registry INFO 2024-02-23 13:08:03,330 [pN:main,p:73244,tN:MainThread] VisualizationsRegistry, loaded plugin: venn galaxy.tours._impl INFO 2024-02-23 13:08:03,354 [pN:main,p:73244,tN:MainThread] Loaded tour 'core.galaxy_ui' galaxy.tours._impl INFO 2024-02-23 13:08:03,371 [pN:main,p:73244,tN:MainThread] Loaded tour 'core.deferred' galaxy.tours._impl INFO 2024-02-23 13:08:03,384 [pN:main,p:73244,tN:MainThread] Loaded tour 'core.history' galaxy.tours._impl INFO 2024-02-23 13:08:03,395 [pN:main,p:73244,tN:MainThread] Loaded tour 'core.windows' galaxy.workflow.scheduling_manager INFO 2024-02-23 13:08:03,401 [pN:main,p:73244,tN:MainThread] No workflow schedulers plugin config file defined, using default scheduler. galaxy.web_stack.handlers INFO 2024-02-23 13:08:03,401 [pN:main,p:73244,tN:MainThread] WorkflowSchedulingManager: No job handler assignment method is set, defaulting to 'HANDLER_ASSIGNMENT_METHODS.DB_SKIP_LOCKED', set the `assign_with` attribute on <handlers> to override the default galaxy.workflow.scheduling_manager DEBUG 2024-02-23 13:08:03,401 [pN:main,p:73244,tN:MainThread] Starting workflow schedulers galaxy.app INFO 2024-02-23 13:08:03,403 [pN:main,p:73244,tN:MainThread] Galaxy app startup finished (2667.379 ms) galaxy.web.framework.base DEBUG 2024-02-23 13:08:03,430 [pN:main,p:73244,tN:MainThread] Enabling 'user' controller, class: User galaxy.web.framework.base DEBUG 2024-02-23 13:08:03,431 [pN:main,p:73244,tN:MainThread] Enabling 'data_manager' controller, class: DataManager galaxy.web.framework.base DEBUG 2024-02-23 13:08:03,432 [pN:main,p:73244,tN:MainThread] Enabling 'async' controller, class: ASync galaxy.web.framework.base DEBUG 2024-02-23 13:08:03,432 [pN:main,p:73244,tN:MainThread] Enabling 'tag' controller, class: TagsController galaxy.web.framework.base DEBUG 2024-02-23 13:08:03,437 [pN:main,p:73244,tN:MainThread] Enabling 'page' controller, class: PageController galaxy.web.framework.base DEBUG 2024-02-23 13:08:03,438 [pN:main,p:73244,tN:MainThread] Enabling 'root' controller, class: RootController galaxy.web.framework.base DEBUG 2024-02-23 13:08:03,438 [pN:main,p:73244,tN:MainThread] Enabling 'tool_runner' controller, class: ToolRunner galaxy.web.framework.base DEBUG 2024-02-23 13:08:03,439 [pN:main,p:73244,tN:MainThread] Enabling 'error' controller, class: Error galaxy.web.framework.base DEBUG 2024-02-23 13:08:03,439 [pN:main,p:73244,tN:MainThread] Enabling 'forms' controller, class: Forms galaxy.web.framework.base DEBUG 2024-02-23 13:08:03,454 [pN:main,p:73244,tN:MainThread] Enabling 'admin_toolshed' controller, class: AdminGalaxy galaxy.web.framework.base DEBUG 2024-02-23 13:08:03,454 [pN:main,p:73244,tN:MainThread] Enabling 'admin_toolshed' controller, class: AdminToolshed galaxy.web.framework.base DEBUG 2024-02-23 13:08:03,456 [pN:main,p:73244,tN:MainThread] Enabling 'visualization' controller, class: VisualizationController galaxy.web.framework.base DEBUG 2024-02-23 13:08:03,456 [pN:main,p:73244,tN:MainThread] Enabling 'shed_tool_static' controller, class: ShedToolStatic galaxy.web.framework.base DEBUG 2024-02-23 13:08:03,457 [pN:main,p:73244,tN:MainThread] Enabling 'authnz' controller, class: JSAppLauncher galaxy.web.framework.base DEBUG 2024-02-23 13:08:03,457 [pN:main,p:73244,tN:MainThread] Enabling 'authnz' controller, class: OIDC galaxy.web.framework.base DEBUG 2024-02-23 13:08:03,459 [pN:main,p:73244,tN:MainThread] Enabling 'workflow' controller, class: WorkflowController galaxy.web.framework.base DEBUG 2024-02-23 13:08:03,460 [pN:main,p:73244,tN:MainThread] Enabling 'history' controller, class: HistoryController galaxy.web.framework.base DEBUG 2024-02-23 13:08:03,490 [pN:main,p:73244,tN:MainThread] Enabling 'dataset' controller, class: DatasetInterface galaxy.web.framework.base DEBUG 2024-02-23 13:08:03,490 [pN:main,p:73244,tN:MainThread] Enabling 'admin' controller, class: AdminGalaxy galaxy.web.framework.base DEBUG 2024-02-23 13:08:04,203 [pN:main,p:73244,tN:MainThread] Enabling 'library_datasets' API controller, class: LibraryDatasetsController galaxy.web.framework.base DEBUG 2024-02-23 13:08:04,355 [pN:main,p:73244,tN:MainThread] Enabling 'jobs' API controller, class: JobController galaxy.web.framework.base DEBUG 2024-02-23 13:08:04,475 [pN:main,p:73244,tN:MainThread] Enabling 'job_files' API controller, class: JobFilesAPIController galaxy.web.framework.base DEBUG 2024-02-23 13:08:04,523 [pN:main,p:73244,tN:MainThread] Enabling 'toolshed' API controller, class: ToolShedController galaxy.web.framework.base DEBUG 2024-02-23 13:08:04,539 [pN:main,p:73244,tN:MainThread] Enabling 'tools' API controller, class: ToolsController galaxy.web.framework.base DEBUG 2024-02-23 13:08:04,660 [pN:main,p:73244,tN:MainThread] Enabling 'trs_consumer' API controller, class: TrsConsumeAPIController galaxy.web.framework.base DEBUG 2024-02-23 13:08:04,661 [pN:main,p:73244,tN:MainThread] Enabling 'history_dataset_extended_metadata' API controller, class: HistoryDatasetExtendMetadataController galaxy.web.framework.base DEBUG 2024-02-23 13:08:04,661 [pN:main,p:73244,tN:MainThread] Enabling 'library_dataset_extended_metadata' API controller, class: LibraryDatasetExtendMetadataController galaxy.web.framework.base DEBUG 2024-02-23 13:08:04,661 [pN:main,p:73244,tN:MainThread] Enabling 'container_resolution' API controller, class: ContainerResolutionAPIController galaxy.web.framework.base DEBUG 2024-02-23 13:08:04,662 [pN:main,p:73244,tN:MainThread] Enabling 'job_ports' API controller, class: JobPortsAPIController galaxy.web.framework.base DEBUG 2024-02-23 13:08:04,663 [pN:main,p:73244,tN:MainThread] Enabling 'tool_dependencies' API controller, class: ToolDependenciesAPIController galaxy.web.framework.base DEBUG 2024-02-23 13:08:04,802 [pN:main,p:73244,tN:MainThread] Enabling 'history_content_provenance' API controller, class: HDAProvenanceController galaxy.web.framework.base DEBUG 2024-02-23 13:08:04,802 [pN:main,p:73244,tN:MainThread] Enabling 'ldda_provenance' API controller, class: LDDAProvenanceController galaxy.web.framework.base DEBUG 2024-02-23 13:08:04,803 [pN:main,p:73244,tN:MainThread] Enabling 'tool_entry_points' API controller, class: ToolEntryPointsAPIController galaxy.web.framework.base DEBUG 2024-02-23 13:08:04,939 [pN:main,p:73244,tN:MainThread] Enabling 'authenticate' API controller, class: AuthenticationController galaxy.web.framework.base DEBUG 2024-02-23 13:08:05,372 [pN:main,p:73244,tN:MainThread] Enabling 'trs_search' API controller, class: TrsSearchAPIController galaxy.web.framework.base DEBUG 2024-02-23 13:08:05,425 [pN:main,p:73244,tN:MainThread] Enabling 'tool_shed_repositories' API controller, class: ToolShedRepositoriesController galaxy.web.framework.base DEBUG 2024-02-23 13:08:05,611 [pN:main,p:73244,tN:MainThread] Enabling 'forms' API controller, class: FormDefinitionAPIController galaxy.web.framework.base DEBUG 2024-02-23 13:08:05,887 [pN:main,p:73244,tN:MainThread] Enabling 'workflows' API controller, class: WorkflowsAPIController galaxy.web.framework.base DEBUG 2024-02-23 13:08:05,888 [pN:main,p:73244,tN:MainThread] Enabling 'uploads' API controller, class: UploadsAPIController galaxy.web.framework.base DEBUG 2024-02-23 13:08:06,537 [pN:main,p:73244,tN:MainThread] Enabling 'history_annotations' API controller, class: HistoryAnnotationsController galaxy.web.framework.base DEBUG 2024-02-23 13:08:06,538 [pN:main,p:73244,tN:MainThread] Enabling 'history_content_annotations' API controller, class: HistoryContentAnnotationsController galaxy.web.framework.base DEBUG 2024-02-23 13:08:06,538 [pN:main,p:73244,tN:MainThread] Enabling 'workflow_annotations' API controller, class: WorkflowAnnotationsController galaxy.web.framework.base DEBUG 2024-02-23 13:08:06,582 [pN:main,p:73244,tN:MainThread] Enabling 'visualizations' API controller, class: VisualizationsController galaxy.web.framework.base DEBUG 2024-02-23 13:08:06,583 [pN:main,p:73244,tN:MainThread] Enabling 'sanitize_allow' API controller, class: SanitizeAllowController galaxy.web.framework.base DEBUG 2024-02-23 13:08:06,583 [pN:main,p:73244,tN:MainThread] Enabling 'page_revisions' API controller, class: PageRevisionsController galaxy.web.framework.base DEBUG 2024-02-23 13:08:06,653 [pN:main,p:73244,tN:MainThread] Enabling 'library_contents' API controller, class: LibraryContentsController galaxy.web.framework.base DEBUG 2024-02-23 13:08:06,771 [pN:main,p:73244,tN:MainThread] Enabling 'users' API controller, class: UserAPIController galaxy.web.framework.base DEBUG 2024-02-23 13:08:06,772 [pN:main,p:73244,tN:MainThread] Enabling 'cloudauthz' API controller, class: CloudAuthzController galaxy.web.framework.base DEBUG 2024-02-23 13:08:06,772 [pN:main,p:73244,tN:MainThread] Enabling 'webhooks' API controller, class: WebhooksController galaxy.web.framework.base DEBUG 2024-02-23 13:08:06,847 [pN:main,p:73244,tN:MainThread] Enabling 'plugins' API controller, class: PluginsController galaxy.web.framework.base DEBUG 2024-02-23 13:08:06,882 [pN:main,p:73244,tN:MainThread] Enabling 'dynamic_tools' API controller, class: DynamicToolsController galaxy.webapps.util DEBUG 2024-02-23 13:08:07,164 [pN:main,p:73244,tN:MainThread] Enabling 'paste.httpexceptions' middleware galaxy.webapps.util DEBUG 2024-02-23 13:08:07,165 [pN:main,p:73244,tN:MainThread] Enabling 'RemoteUser' middleware galaxy.webapps.util DEBUG 2024-02-23 13:08:07,165 [pN:main,p:73244,tN:MainThread] Enabling 'ErrorMiddleware' middleware galaxy.webapps.util DEBUG 2024-02-23 13:08:07,165 [pN:main,p:73244,tN:MainThread] Enabling 'TusMiddleware' middleware galaxy.webapps.util DEBUG 2024-02-23 13:08:07,165 [pN:main,p:73244,tN:MainThread] Enabling 'XForwardedHostMiddleware' middleware galaxy.webapps.util DEBUG 2024-02-23 13:08:07,165 [pN:main,p:73244,tN:MainThread] Enabling 'RequestIDMiddleware' middleware galaxy.webapps.util DEBUG 2024-02-23 13:08:07,165 [pN:main,p:73244,tN:MainThread] Enabling 'build_url_map' middleware galaxy.webapps.galaxy.buildapp DEBUG 2024-02-23 13:08:07,165 [pN:main,p:73244,tN:MainThread] Prior to webapp return, Galaxy thread <_MainThread(MainThread, started 140325188585280)> is alive. galaxy.web_stack DEBUG 2024-02-23 13:08:08,774 [pN:main.1,p:73449,tN:Thread-2] server_name set to: main.1 galaxy.jobs.manager DEBUG 2024-02-23 13:08:08,775 [pN:main.1,p:73449,tN:Thread-2] Initializing job handler galaxy.jobs INFO 2024-02-23 13:08:08,775 [pN:main.1,p:73449,tN:Thread-2] Handler 'main.1' will load all configured runner plugins galaxy.jobs.runners.state_handler_factory DEBUG 2024-02-23 13:08:08,786 [pN:main.1,p:73449,tN:Thread-2] Loaded 'failure' state handler from module galaxy.jobs.runners.state_handlers.resubmit galaxy.jobs DEBUG 2024-02-23 13:08:08,786 [pN:main.1,p:73449,tN:Thread-2] Loaded job runner 'galaxy.jobs.runners.local:LocalJobRunner' as 'local' galaxy.jobs.handler DEBUG 2024-02-23 13:08:08,786 [pN:main.1,p:73449,tN:Thread-2] Loaded job runners plugins: local galaxy.jobs.runners DEBUG 2024-02-23 13:08:08,787 [pN:main.1,p:73449,tN:Thread-2] Starting 4 LocalRunner workers galaxy.jobs.handler DEBUG 2024-02-23 13:08:08,795 [pN:main.1,p:73449,tN:Thread-2] Handler queue starting for jobs assigned to handler: main.1 galaxy.jobs.handler INFO 2024-02-23 13:08:08,825 [pN:main.1,p:73449,tN:JobHandlerQueue.monitor_thread] Handler job grabber initialized with 'HANDLER_ASSIGNMENT_METHODS.DB_SKIP_LOCKED' assignment method for handler 'main.1', tag(s): galaxy.jobs.handler INFO 2024-02-23 13:08:08,825 [pN:main.1,p:73449,tN:Thread-2] job handler queue started galaxy.jobs.handler INFO 2024-02-23 13:08:08,839 [pN:main.1,p:73449,tN:Thread-2] job handler stop queue started galaxy.jobs.handler INFO 2024-02-23 13:08:08,847 [pN:main.1,p:73449,tN:WorkflowRequestMonitor.monitor_thread] Handler job grabber initialized with 'HANDLER_ASSIGNMENT_METHODS.DB_SKIP_LOCKED' assignment method for handler 'main.1', tag(s): None, _default_ galaxy.queue_worker INFO 2024-02-23 13:08:08,860 [pN:main.1,p:73449,tN:Thread-2] Binding and starting galaxy control worker for main.1 galaxy.queue_worker DEBUG 2024-02-23 13:08:08,867 [pN:main.1,p:73449,tN:Thread-2] Executing toolbox reload on 'main.1' galaxy.util WARNING 2024-02-23 13:08:08,928 [pN:main.1,p:73449,tN:Thread-2] directory not found: /scratch/rico/galaxy/lib/galaxy/util/../../../config/plugins/activities galaxy.tools WARNING 2024-02-23 13:08:08,954 [pN:main.1,p:73449,tN:Thread-2] The default shed tool config file (/tmp/tmpcb4g3qga/shed_tool_conf.xml) has been added to the tool_config_file option, if this is not the desired behavior, please set shed_tool_config_file to your primary shed-enabled tool config file galaxy.model.database_heartbeat DEBUG 2024-02-23 13:08:08,955 [pN:main.1,p:73449,tN:database_heartbeart_main.1.thread] main.1 is config watcher galaxy.tool_util.toolbox.base INFO 2024-02-23 13:08:08,959 [pN:main.1,p:73449,tN:Thread-2] Parsing the tool configuration /tmp/tmpcb4g3qga/tool_conf.xml galaxy.tool_util.toolbox.base DEBUG 2024-02-23 13:08:08,962 [pN:main.1,p:73449,tN:Thread-2] Tool path for tool configuration /tmp/tmpcb4g3qga/tool_conf.xml is None galaxy.tools WARNING 2024-02-23 13:08:08,964 [pN:main.1,p:73449,tN:Thread-2] The default shed tool config file (/tmp/tmpcb4g3qga/shed_tool_conf.xml) has been added to the tool_config_file option, if this is not the desired behavior, please set shed_tool_config_file to your primary shed-enabled tool config file galaxy.tool_util.toolbox.base INFO 2024-02-23 13:08:08,964 [pN:main.1,p:73449,tN:Thread-2] Parsing the tool configuration /tmp/tmpcb4g3qga/shed_tools_conf.xml galaxy.tool_util.toolbox.base DEBUG 2024-02-23 13:08:08,965 [pN:main.1,p:73449,tN:Thread-2] Tool path for shed tool configuration /tmp/tmpcb4g3qga/shed_tools_conf.xml is /tmp/tmpcb4g3qga/shed_tools galaxy.tools WARNING 2024-02-23 13:08:08,966 [pN:main.1,p:73449,tN:Thread-2] The default shed tool config file (/tmp/tmpcb4g3qga/shed_tool_conf.xml) has been added to the tool_config_file option, if this is not the desired behavior, please set shed_tool_config_file to your primary shed-enabled tool config file galaxy.tool_util.toolbox.base INFO 2024-02-23 13:08:08,966 [pN:main.1,p:73449,tN:Thread-2] Parsing the tool configuration /tmp/tmpcb4g3qga/empty_tool_conf.xml galaxy.tool_util.toolbox.base DEBUG 2024-02-23 13:08:08,969 [pN:main.1,p:73449,tN:Thread-2] Tool path for tool configuration /tmp/tmpcb4g3qga/empty_tool_conf.xml is None galaxy.tool_util.toolbox.base DEBUG 2024-02-23 13:08:08,970 [pN:main.1,p:73449,tN:Thread-2] Reading tools from config files finished (21.047 ms) galaxy.tool_util.toolbox.base DEBUG 2024-02-23 13:08:08,970 [pN:main.1,p:73449,tN:Thread-2] Loaded tool id: upload1, version: 1.1.7 into tool panel.. galaxy.tool_util.toolbox.base DEBUG 2024-02-23 13:08:08,970 [pN:main.1,p:73449,tN:Thread-2] Loading tool panel finished (0.578 ms) galaxy.tool_util.toolbox.base DEBUG 2024-02-23 13:08:08,975 [pN:main.1,p:73449,tN:Thread-2] Loaded tool id: upload1, version: 1.1.7 into tool panel.. galaxy.tool_util.toolbox.views.edam DEBUG 2024-02-23 13:08:08,975 [pN:main.1,p:73449,tN:Thread-2] Loading EDAM tool panel finished (4.166 ms) galaxy.tool_util.toolbox.base DEBUG 2024-02-23 13:08:08,977 [pN:main.1,p:73449,tN:Thread-2] Loaded tool id: upload1, version: 1.1.7 into tool panel.. galaxy.tool_util.toolbox.views.edam DEBUG 2024-02-23 13:08:08,977 [pN:main.1,p:73449,tN:Thread-2] Loading EDAM tool panel finished (1.780 ms) galaxy.datatypes.registry DEBUG 2024-02-23 13:08:08,977 [pN:main.1,p:73449,tN:Thread-2] Loaded converter: CONVERTER_uncompressed_to_gz galaxy.datatypes.registry DEBUG 2024-02-23 13:08:08,978 [pN:main.1,p:73449,tN:Thread-2] Loaded converter: CONVERTER_gz_to_uncompressed galaxy.datatypes.registry DEBUG 2024-02-23 13:08:08,978 [pN:main.1,p:73449,tN:Thread-2] Loaded converter: CONVERTER_uncompressed_to_gz galaxy.datatypes.registry DEBUG 2024-02-23 13:08:08,978 [pN:main.1,p:73449,tN:Thread-2] Loaded converter: CONVERTER_gz_to_uncompressed galaxy.datatypes.registry DEBUG 2024-02-23 13:08:08,978 [pN:main.1,p:73449,tN:Thread-2] Loaded converter: CONVERTER_uncompressed_to_gz galaxy.datatypes.registry DEBUG 2024-02-23 13:08:08,979 [pN:main.1,p:73449,tN:Thread-2] Loaded converter: CONVERTER_gz_to_uncompressed galaxy.datatypes.registry DEBUG 2024-02-23 13:08:08,979 [pN:main.1,p:73449,tN:Thread-2] Loaded converter: CONVERTER_Bam_Bai_0 galaxy.datatypes.registry DEBUG 2024-02-23 13:08:08,979 [pN:main.1,p:73449,tN:Thread-2] Loaded converter: CONVERTER_bam_to_bigwig_0 galaxy.datatypes.registry DEBUG 2024-02-23 13:08:08,979 [pN:main.1,p:73449,tN:Thread-2] Loaded converter: CONVERTER_bam_to_qname_sorted_bam galaxy.datatypes.registry DEBUG 2024-02-23 13:08:08,980 [pN:main.1,p:73449,tN:Thread-2] Loaded converter: CONVERTER_bam_to_bigwig_0 galaxy.datatypes.registry DEBUG 2024-02-23 13:08:08,980 [pN:main.1,p:73449,tN:Thread-2] Loaded converter: CONVERTER_bam_to_coodinate_sorted_bam galaxy.datatypes.registry DEBUG 2024-02-23 13:08:08,980 [pN:main.1,p:73449,tN:Thread-2] Loaded converter: CONVERTER_bam_to_qname_sorted_bam galaxy.datatypes.registry DEBUG 2024-02-23 13:08:08,980 [pN:main.1,p:73449,tN:Thread-2] Loaded converter: CONVERTER_cram_to_bam_0 galaxy.datatypes.registry DEBUG 2024-02-23 13:08:08,980 [pN:main.1,p:73449,tN:Thread-2] Loaded converter: CONVERTER_bed_to_gff_0 galaxy.datatypes.registry DEBUG 2024-02-23 13:08:08,981 [pN:main.1,p:73449,tN:Thread-2] Loaded converter: CONVERTER_interval_to_bgzip_0 galaxy.datatypes.registry DEBUG 2024-02-23 13:08:08,981 [pN:main.1,p:73449,tN:Thread-2] Loaded converter: CONVERTER_interval_to_tabix_0 galaxy.datatypes.registry DEBUG 2024-02-23 13:08:08,981 [pN:main.1,p:73449,tN:Thread-2] Loaded converter: CONVERTER_bed_gff_or_vcf_to_bigwig_0 galaxy.datatypes.registry DEBUG 2024-02-23 13:08:08,981 [pN:main.1,p:73449,tN:Thread-2] Loaded converter: CONVERTER_bed_to_fli_0 galaxy.datatypes.registry DEBUG 2024-02-23 13:08:08,981 [pN:main.1,p:73449,tN:Thread-2] Loaded converter: CONVERTER_bedgraph_to_bigwig galaxy.datatypes.registry DEBUG 2024-02-23 13:08:08,982 [pN:main.1,p:73449,tN:Thread-2] Loaded converter: CONVERTER_len_to_linecount galaxy.datatypes.registry DEBUG 2024-02-23 13:08:08,982 [pN:main.1,p:73449,tN:Thread-2] Loaded converter: CONVERTER_parquet_to_csv galaxy.datatypes.registry DEBUG 2024-02-23 13:08:08,983 [pN:main.1,p:73449,tN:Thread-2] Loaded converter: bigwigtowig galaxy.datatypes.registry DEBUG 2024-02-23 13:08:08,983 [pN:main.1,p:73449,tN:Thread-2] Loaded converter: CONVERTER_interval_to_bgzip_0 galaxy.datatypes.registry DEBUG 2024-02-23 13:08:08,983 [pN:main.1,p:73449,tN:Thread-2] Loaded converter: CONVERTER_interval_to_tabix_0 galaxy.datatypes.registry DEBUG 2024-02-23 13:08:08,983 [pN:main.1,p:73449,tN:Thread-2] Loaded converter: CONVERTER_bed_gff_or_vcf_to_bigwig_0 galaxy.datatypes.registry DEBUG 2024-02-23 13:08:08,983 [pN:main.1,p:73449,tN:Thread-2] Loaded converter: csv_to_tabular galaxy.datatypes.registry DEBUG 2024-02-23 13:08:08,984 [pN:main.1,p:73449,tN:Thread-2] Loaded converter: tabular_to_csv galaxy.datatypes.registry DEBUG 2024-02-23 13:08:08,984 [pN:main.1,p:73449,tN:Thread-2] Loaded converter: CONVERTER_fasta_to_tabular galaxy.datatypes.registry DEBUG 2024-02-23 13:08:08,984 [pN:main.1,p:73449,tN:Thread-2] Loaded converter: CONVERTER_fasta_to_bowtie_base_index galaxy.datatypes.registry DEBUG 2024-02-23 13:08:08,984 [pN:main.1,p:73449,tN:Thread-2] Loaded converter: CONVERTER_fasta_to_bowtie_color_index galaxy.datatypes.registry DEBUG 2024-02-23 13:08:08,984 [pN:main.1,p:73449,tN:Thread-2] Loaded converter: CONVERTER_fasta_to_2bit galaxy.datatypes.registry DEBUG 2024-02-23 13:08:08,985 [pN:main.1,p:73449,tN:Thread-2] Loaded converter: CONVERTER_fasta_to_len galaxy.datatypes.registry DEBUG 2024-02-23 13:08:08,986 [pN:main.1,p:73449,tN:Thread-2] Loaded converter: CONVERTER_fasta_to_fai galaxy.datatypes.registry DEBUG 2024-02-23 13:08:08,986 [pN:main.1,p:73449,tN:Thread-2] Loaded converter: CONVERTER_uncompressed_to_gz galaxy.datatypes.registry DEBUG 2024-02-23 13:08:08,986 [pN:main.1,p:73449,tN:Thread-2] Loaded converter: CONVERTER_gz_to_uncompressed galaxy.datatypes.registry DEBUG 2024-02-23 13:08:08,987 [pN:main.1,p:73449,tN:Thread-2] Loaded converter: CONVERTER_fastq_to_fqtoc0 galaxy.datatypes.registry DEBUG 2024-02-23 13:08:08,987 [pN:main.1,p:73449,tN:Thread-2] Loaded converter: CONVERTER_uncompressed_to_gz galaxy.datatypes.registry DEBUG 2024-02-23 13:08:08,987 [pN:main.1,p:73449,tN:Thread-2] Loaded converter: CONVERTER_gz_to_uncompressed galaxy.datatypes.registry DEBUG 2024-02-23 13:08:08,987 [pN:main.1,p:73449,tN:Thread-2] Loaded converter: CONVERTER_bz2_to_uncompressed galaxy.datatypes.registry DEBUG 2024-02-23 13:08:08,987 [pN:main.1,p:73449,tN:Thread-2] Loaded converter: CONVERTER_fastq_to_fqtoc0 galaxy.datatypes.registry DEBUG 2024-02-23 13:08:08,988 [pN:main.1,p:73449,tN:Thread-2] Loaded converter: CONVERTER_uncompressed_to_gz galaxy.datatypes.registry DEBUG 2024-02-23 13:08:08,988 [pN:main.1,p:73449,tN:Thread-2] Loaded converter: CONVERTER_gz_to_uncompressed galaxy.datatypes.registry DEBUG 2024-02-23 13:08:08,988 [pN:main.1,p:73449,tN:Thread-2] Loaded converter: CONVERTER_bz2_to_uncompressed galaxy.datatypes.registry DEBUG 2024-02-23 13:08:08,988 [pN:main.1,p:73449,tN:Thread-2] Loaded converter: CONVERTER_fastq_to_fqtoc0 galaxy.datatypes.registry DEBUG 2024-02-23 13:08:08,988 [pN:main.1,p:73449,tN:Thread-2] Loaded converter: CONVERTER_uncompressed_to_gz galaxy.datatypes.registry DEBUG 2024-02-23 13:08:08,988 [pN:main.1,p:73449,tN:Thread-2] Loaded converter: CONVERTER_gz_to_uncompressed galaxy.datatypes.registry DEBUG 2024-02-23 13:08:08,989 [pN:main.1,p:73449,tN:Thread-2] Loaded converter: CONVERTER_bz2_to_uncompressed galaxy.datatypes.registry DEBUG 2024-02-23 13:08:08,990 [pN:main.1,p:73449,tN:Thread-2] Loaded converter: CONVERTER_fastq_to_fqtoc0 galaxy.datatypes.registry DEBUG 2024-02-23 13:08:08,990 [pN:main.1,p:73449,tN:Thread-2] Loaded converter: CONVERTER_uncompressed_to_gz galaxy.datatypes.registry DEBUG 2024-02-23 13:08:08,990 [pN:main.1,p:73449,tN:Thread-2] Loaded converter: CONVERTER_gz_to_uncompressed galaxy.datatypes.registry DEBUG 2024-02-23 13:08:08,990 [pN:main.1,p:73449,tN:Thread-2] Loaded converter: CONVERTER_bz2_to_uncompressed galaxy.datatypes.registry DEBUG 2024-02-23 13:08:08,990 [pN:main.1,p:73449,tN:Thread-2] Loaded converter: CONVERTER_fastq_to_fqtoc0 galaxy.datatypes.registry DEBUG 2024-02-23 13:08:08,990 [pN:main.1,p:73449,tN:Thread-2] Loaded converter: CONVERTER_uncompressed_to_gz galaxy.datatypes.registry DEBUG 2024-02-23 13:08:08,991 [pN:main.1,p:73449,tN:Thread-2] Loaded converter: CONVERTER_gz_to_uncompressed galaxy.datatypes.registry DEBUG 2024-02-23 13:08:08,991 [pN:main.1,p:73449,tN:Thread-2] Loaded converter: CONVERTER_bz2_to_uncompressed galaxy.datatypes.registry DEBUG 2024-02-23 13:08:08,991 [pN:main.1,p:73449,tN:Thread-2] Loaded converter: CONVERTER_gff_to_bed_0 galaxy.datatypes.registry DEBUG 2024-02-23 13:08:08,991 [pN:main.1,p:73449,tN:Thread-2] Loaded converter: CONVERTER_gff_to_interval_index_0 galaxy.datatypes.registry DEBUG 2024-02-23 13:08:08,991 [pN:main.1,p:73449,tN:Thread-2] Loaded converter: CONVERTER_bed_gff_or_vcf_to_bigwig_0 galaxy.datatypes.registry DEBUG 2024-02-23 13:08:08,991 [pN:main.1,p:73449,tN:Thread-2] Loaded converter: CONVERTER_gff_to_fli_0 galaxy.datatypes.registry DEBUG 2024-02-23 13:08:08,991 [pN:main.1,p:73449,tN:Thread-2] Loaded converter: CONVERTER_interval_to_bgzip_0 galaxy.datatypes.registry DEBUG 2024-02-23 13:08:08,992 [pN:main.1,p:73449,tN:Thread-2] Loaded converter: CONVERTER_interval_to_tabix_0 galaxy.datatypes.registry DEBUG 2024-02-23 13:08:08,992 [pN:main.1,p:73449,tN:Thread-2] Loaded converter: CONVERTER_uncompressed_to_gz galaxy.datatypes.registry DEBUG 2024-02-23 13:08:08,992 [pN:main.1,p:73449,tN:Thread-2] Loaded converter: CONVERTER_gz_to_uncompressed galaxy.datatypes.registry DEBUG 2024-02-23 13:08:08,992 [pN:main.1,p:73449,tN:Thread-2] Loaded converter: CONVERTER_bz2_to_uncompressed galaxy.datatypes.registry DEBUG 2024-02-23 13:08:08,992 [pN:main.1,p:73449,tN:Thread-2] Loaded converter: CONVERTER_gff_to_interval_index_0 galaxy.datatypes.registry DEBUG 2024-02-23 13:08:08,992 [pN:main.1,p:73449,tN:Thread-2] Loaded converter: CONVERTER_bed_gff_or_vcf_to_bigwig_0 galaxy.datatypes.registry DEBUG 2024-02-23 13:08:08,992 [pN:main.1,p:73449,tN:Thread-2] Loaded converter: CONVERTER_interval_to_bed_0 galaxy.datatypes.registry DEBUG 2024-02-23 13:08:08,992 [pN:main.1,p:73449,tN:Thread-2] Loaded converter: CONVERTER_interval_to_bedstrict_0 galaxy.datatypes.registry DEBUG 2024-02-23 13:08:08,992 [pN:main.1,p:73449,tN:Thread-2] Loaded converter: CONVERTER_interval_to_bed6_0 galaxy.datatypes.registry DEBUG 2024-02-23 13:08:08,993 [pN:main.1,p:73449,tN:Thread-2] Loaded converter: CONVERTER_interval_to_bed12_0 galaxy.datatypes.registry DEBUG 2024-02-23 13:08:08,993 [pN:main.1,p:73449,tN:Thread-2] Loaded converter: CONVERTER_interval_to_bgzip_0 galaxy.datatypes.registry DEBUG 2024-02-23 13:08:08,993 [pN:main.1,p:73449,tN:Thread-2] Loaded converter: CONVERTER_interval_to_tabix_0 galaxy.datatypes.registry DEBUG 2024-02-23 13:08:08,993 [pN:main.1,p:73449,tN:Thread-2] Loaded converter: CONVERTER_interval_to_bigwig_0 galaxy.datatypes.registry DEBUG 2024-02-23 13:08:08,993 [pN:main.1,p:73449,tN:Thread-2] Loaded converter: CONVERTER_picard_interval_list_to_bed6 galaxy.datatypes.registry DEBUG 2024-02-23 13:08:08,993 [pN:main.1,p:73449,tN:Thread-2] Loaded converter: CONVERTER_tar_to_directory galaxy.datatypes.registry DEBUG 2024-02-23 13:08:08,993 [pN:main.1,p:73449,tN:Thread-2] Loaded converter: CONVERTER_uncompressed_to_gz galaxy.datatypes.registry DEBUG 2024-02-23 13:08:08,993 [pN:main.1,p:73449,tN:Thread-2] Loaded converter: CONVERTER_gz_to_uncompressed galaxy.datatypes.registry DEBUG 2024-02-23 13:08:08,993 [pN:main.1,p:73449,tN:Thread-2] Loaded converter: CONVERTER_uncompressed_to_gz galaxy.datatypes.registry DEBUG 2024-02-23 13:08:08,993 [pN:main.1,p:73449,tN:Thread-2] Loaded converter: CONVERTER_gz_to_uncompressed galaxy.datatypes.registry DEBUG 2024-02-23 13:08:08,994 [pN:main.1,p:73449,tN:Thread-2] Loaded converter: CONVERTER_uncompressed_to_gz galaxy.datatypes.registry DEBUG 2024-02-23 13:08:08,994 [pN:main.1,p:73449,tN:Thread-2] Loaded converter: CONVERTER_gz_to_uncompressed galaxy.datatypes.registry DEBUG 2024-02-23 13:08:08,994 [pN:main.1,p:73449,tN:Thread-2] Loaded converter: CONVERTER_maf_to_fasta_0 galaxy.datatypes.registry DEBUG 2024-02-23 13:08:08,994 [pN:main.1,p:73449,tN:Thread-2] Loaded converter: CONVERTER_maf_to_interval_0 galaxy.datatypes.registry DEBUG 2024-02-23 13:08:08,994 [pN:main.1,p:73449,tN:Thread-2] Loaded converter: CONVERTER_interval_to_tabix_0 galaxy.datatypes.registry DEBUG 2024-02-23 13:08:08,994 [pN:main.1,p:73449,tN:Thread-2] Loaded converter: CONVERTER_interval_to_bgzip_0 galaxy.datatypes.registry DEBUG 2024-02-23 13:08:08,994 [pN:main.1,p:73449,tN:Thread-2] Loaded converter: CONVERTER_bed_gff_or_vcf_to_bigwig_0 galaxy.datatypes.registry DEBUG 2024-02-23 13:08:08,994 [pN:main.1,p:73449,tN:Thread-2] Loaded converter: CONVERTER_interval_to_bgzip_0 galaxy.datatypes.registry DEBUG 2024-02-23 13:08:08,995 [pN:main.1,p:73449,tN:Thread-2] Loaded converter: CONVERTER_interval_to_tabix_0 galaxy.datatypes.registry DEBUG 2024-02-23 13:08:08,995 [pN:main.1,p:73449,tN:Thread-2] Loaded converter: CONVERTER_sam_to_unsorted_bam galaxy.datatypes.registry DEBUG 2024-02-23 13:08:08,995 [pN:main.1,p:73449,tN:Thread-2] Loaded converter: CONVERTER_bam_to_coodinate_sorted_bam galaxy.datatypes.registry DEBUG 2024-02-23 13:08:08,995 [pN:main.1,p:73449,tN:Thread-2] Loaded converter: CONVERTER_bam_to_qname_sorted_bam galaxy.datatypes.registry DEBUG 2024-02-23 13:08:08,995 [pN:main.1,p:73449,tN:Thread-2] Loaded converter: CONVERTER_sam_to_bigwig_0 galaxy.datatypes.registry DEBUG 2024-02-23 13:08:08,995 [pN:main.1,p:73449,tN:Thread-2] Loaded converter: tabular_to_dbnsfp galaxy.datatypes.registry DEBUG 2024-02-23 13:08:08,995 [pN:main.1,p:73449,tN:Thread-2] Loaded converter: tabular_to_csv galaxy.datatypes.registry DEBUG 2024-02-23 13:08:08,995 [pN:main.1,p:73449,tN:Thread-2] Loaded converter: CONVERTER_uncompressed_to_gz galaxy.datatypes.registry DEBUG 2024-02-23 13:08:08,995 [pN:main.1,p:73449,tN:Thread-2] Loaded converter: CONVERTER_gz_to_uncompressed galaxy.datatypes.registry DEBUG 2024-02-23 13:08:08,995 [pN:main.1,p:73449,tN:Thread-2] Loaded converter: CONVERTER_interval_to_bgzip_0 galaxy.datatypes.registry DEBUG 2024-02-23 13:08:08,996 [pN:main.1,p:73449,tN:Thread-2] Loaded converter: CONVERTER_vcf_to_vcf_bgzip_0 galaxy.datatypes.registry DEBUG 2024-02-23 13:08:08,996 [pN:main.1,p:73449,tN:Thread-2] Loaded converter: CONVERTER_interval_to_tabix_0 galaxy.datatypes.registry DEBUG 2024-02-23 13:08:08,996 [pN:main.1,p:73449,tN:Thread-2] Loaded converter: CONVERTER_bed_gff_or_vcf_to_bigwig_0 galaxy.datatypes.registry DEBUG 2024-02-23 13:08:08,996 [pN:main.1,p:73449,tN:Thread-2] Loaded converter: CONVERTER_uncompressed_to_gz galaxy.datatypes.registry DEBUG 2024-02-23 13:08:08,996 [pN:main.1,p:73449,tN:Thread-2] Loaded converter: CONVERTER_bcf_uncompressed_to_bcf galaxy.datatypes.registry DEBUG 2024-02-23 13:08:08,996 [pN:main.1,p:73449,tN:Thread-2] Loaded converter: CONVERTER_bcf_uncompressed_to_bcf galaxy.datatypes.registry DEBUG 2024-02-23 13:08:08,997 [pN:main.1,p:73449,tN:Thread-2] Loaded converter: CONVERTER_wig_to_bigwig galaxy.datatypes.registry DEBUG 2024-02-23 13:08:08,997 [pN:main.1,p:73449,tN:Thread-2] Loaded converter: CONVERTER_wiggle_to_interval_0 galaxy.datatypes.registry DEBUG 2024-02-23 13:08:08,997 [pN:main.1,p:73449,tN:Thread-2] Loaded converter: CONVERTER_vcf_bgzip_to_tabix_0 galaxy.datatypes.registry DEBUG 2024-02-23 13:08:08,997 [pN:main.1,p:73449,tN:Thread-2] Loaded converter: CONVERTER_gz_to_uncompressed galaxy.datatypes.registry DEBUG 2024-02-23 13:08:08,997 [pN:main.1,p:73449,tN:Thread-2] Loaded converter: lped2fpedconvert galaxy.datatypes.registry DEBUG 2024-02-23 13:08:08,998 [pN:main.1,p:73449,tN:Thread-2] Loaded converter: lped2pbedconvert galaxy.datatypes.registry DEBUG 2024-02-23 13:08:08,998 [pN:main.1,p:73449,tN:Thread-2] Loaded converter: pbed2lpedconvert galaxy.datatypes.registry DEBUG 2024-02-23 13:08:08,998 [pN:main.1,p:73449,tN:Thread-2] Loaded converter: pbed2ldindepconvert galaxy.datatypes.registry DEBUG 2024-02-23 13:08:08,998 [pN:main.1,p:73449,tN:Thread-2] Loaded converter: CONVERTER_uncompressed_to_gz galaxy.datatypes.registry DEBUG 2024-02-23 13:08:08,998 [pN:main.1,p:73449,tN:Thread-2] Loaded converter: CONVERTER_gz_to_uncompressed galaxy.datatypes.registry DEBUG 2024-02-23 13:08:08,999 [pN:main.1,p:73449,tN:Thread-2] Loaded converter: CONVERTER_biom galaxy.datatypes.registry DEBUG 2024-02-23 13:08:08,999 [pN:main.1,p:73449,tN:Thread-2] Loaded converter: CONVERTER_biom galaxy.datatypes.registry DEBUG 2024-02-23 13:08:09,000 [pN:main.1,p:73449,tN:Thread-2] Loaded converter: CONVERTER_molecules galaxy.datatypes.registry DEBUG 2024-02-23 13:08:09,000 [pN:main.1,p:73449,tN:Thread-2] Loaded converter: CONVERTER_molecules galaxy.datatypes.registry DEBUG 2024-02-23 13:08:09,001 [pN:main.1,p:73449,tN:Thread-2] Loaded converter: CONVERTER_molecules galaxy.datatypes.registry DEBUG 2024-02-23 13:08:09,002 [pN:main.1,p:73449,tN:Thread-2] Loaded converter: CONVERTER_SMILES_to_MOL galaxy.datatypes.registry DEBUG 2024-02-23 13:08:09,002 [pN:main.1,p:73449,tN:Thread-2] Loaded converter: CONVERTER_molecules galaxy.datatypes.registry DEBUG 2024-02-23 13:08:09,002 [pN:main.1,p:73449,tN:Thread-2] Loaded converter: CONVERTER_smiles_to_smiles galaxy.datatypes.registry DEBUG 2024-02-23 13:08:09,003 [pN:main.1,p:73449,tN:Thread-2] Loaded converter: CONVERTER_molecules galaxy.datatypes.registry DEBUG 2024-02-23 13:08:09,003 [pN:main.1,p:73449,tN:Thread-2] Loaded converter: CONVERTER_molecules galaxy.datatypes.registry DEBUG 2024-02-23 13:08:09,003 [pN:main.1,p:73449,tN:Thread-2] Loaded converter: CONVERTER_molecules galaxy.datatypes.registry DEBUG 2024-02-23 13:08:09,013 [pN:main.1,p:73449,tN:Thread-2] Loaded converter: CONVERTER_molecules galaxy.datatypes.registry DEBUG 2024-02-23 13:08:09,014 [pN:main.1,p:73449,tN:Thread-2] Loaded converter: CONVERTER_molecules galaxy.datatypes.registry DEBUG 2024-02-23 13:08:09,014 [pN:main.1,p:73449,tN:Thread-2] Loaded converter: CONVERTER_molecules galaxy.datatypes.registry DEBUG 2024-02-23 13:08:09,014 [pN:main.1,p:73449,tN:Thread-2] Loaded converter: CONVERTER_inchi_to_mol galaxy.datatypes.registry DEBUG 2024-02-23 13:08:09,014 [pN:main.1,p:73449,tN:Thread-2] Loaded converter: CONVERTER_molecules galaxy.datatypes.registry DEBUG 2024-02-23 13:08:09,014 [pN:main.1,p:73449,tN:Thread-2] Loaded converter: CONVERTER_molecules galaxy.datatypes.registry DEBUG 2024-02-23 13:08:09,014 [pN:main.1,p:73449,tN:Thread-2] Loaded converter: CONVERTER_molecules galaxy.datatypes.registry DEBUG 2024-02-23 13:08:09,015 [pN:main.1,p:73449,tN:Thread-2] Loaded converter: CONVERTER_molecules galaxy.datatypes.registry DEBUG 2024-02-23 13:08:09,015 [pN:main.1,p:73449,tN:Thread-2] Loaded converter: CONVERTER_molecules galaxy.datatypes.registry DEBUG 2024-02-23 13:08:09,018 [pN:main.1,p:73449,tN:Thread-2] Loaded converter: CONVERTER_molecules galaxy.datatypes.registry DEBUG 2024-02-23 13:08:09,020 [pN:main.1,p:73449,tN:Thread-2] Loaded converter: CONVERTER_molecules galaxy.datatypes.registry DEBUG 2024-02-23 13:08:09,020 [pN:main.1,p:73449,tN:Thread-2] Loaded converter: CONVERTER_molecules galaxy.datatypes.registry DEBUG 2024-02-23 13:08:09,020 [pN:main.1,p:73449,tN:Thread-2] Loaded converter: CONVERTER_molecules galaxy.datatypes.registry DEBUG 2024-02-23 13:08:09,020 [pN:main.1,p:73449,tN:Thread-2] Loaded converter: CONVERTER_molecules galaxy.datatypes.registry DEBUG 2024-02-23 13:08:09,020 [pN:main.1,p:73449,tN:Thread-2] Loaded converter: CONVERTER_mol2_to_mol galaxy.datatypes.registry DEBUG 2024-02-23 13:08:09,021 [pN:main.1,p:73449,tN:Thread-2] Loaded converter: CONVERTER_molecules galaxy.datatypes.registry DEBUG 2024-02-23 13:08:09,021 [pN:main.1,p:73449,tN:Thread-2] Loaded converter: CONVERTER_cml_to_smiles galaxy.datatypes.registry DEBUG 2024-02-23 13:08:09,021 [pN:main.1,p:73449,tN:Thread-2] Loaded converter: CONVERTER_molecules galaxy.datatypes.registry DEBUG 2024-02-23 13:08:09,022 [pN:main.1,p:73449,tN:Thread-2] Loaded converter: CONVERTER_molecules galaxy.datatypes.registry DEBUG 2024-02-23 13:08:09,022 [pN:main.1,p:73449,tN:Thread-2] Loaded converter: CONVERTER_molecules galaxy.datatypes.registry DEBUG 2024-02-23 13:08:09,022 [pN:main.1,p:73449,tN:Thread-2] Loaded converter: CONVERTER_Pdb_to_Gro_0 galaxy.datatypes.registry DEBUG 2024-02-23 13:08:09,022 [pN:main.1,p:73449,tN:Thread-2] Loaded converter: CONVERTER_mdconvert galaxy.datatypes.registry DEBUG 2024-02-23 13:08:09,022 [pN:main.1,p:73449,tN:Thread-2] Loaded converter: CONVERTER_mdconvert galaxy.datatypes.registry DEBUG 2024-02-23 13:08:09,023 [pN:main.1,p:73449,tN:Thread-2] Loaded converter: CONVERTER_mdconvert galaxy.datatypes.registry DEBUG 2024-02-23 13:08:09,023 [pN:main.1,p:73449,tN:Thread-2] Loaded converter: CONVERTER_mdconvert galaxy.datatypes.registry DEBUG 2024-02-23 13:08:09,023 [pN:main.1,p:73449,tN:Thread-2] Loaded converter: CONVERTER_mdconvert galaxy.datatypes.registry DEBUG 2024-02-23 13:08:09,023 [pN:main.1,p:73449,tN:Thread-2] Loaded converter: CONVERTER_mdconvert galaxy.datatypes.registry DEBUG 2024-02-23 13:08:09,023 [pN:main.1,p:73449,tN:Thread-2] Loaded converter: CONVERTER_Gro_to_Pdb_0 galaxy.datatypes.registry DEBUG 2024-02-23 13:08:09,024 [pN:main.1,p:73449,tN:Thread-2] Loaded converter: CONVERTER_ref_to_seq_taxomony galaxy.datatypes.registry DEBUG 2024-02-23 13:08:09,024 [pN:main.1,p:73449,tN:Thread-2] Loaded converter: CONVERTER_neostorezip_to_neostore galaxy.datatypes.registry DEBUG 2024-02-23 13:08:09,028 [pN:main.1,p:73449,tN:Thread-2] Loaded external metadata tool: __SET_METADATA__ galaxy.tools.special_tools DEBUG 2024-02-23 13:08:09,031 [pN:main.1,p:73449,tN:Thread-2] Loaded history export tool: __EXPORT_HISTORY__ galaxy.tools.special_tools DEBUG 2024-02-23 13:08:09,032 [pN:main.1,p:73449,tN:Thread-2] Loaded history export to uri tool: __EXPORT_HISTORY_TO_URI__ galaxy.tools.special_tools DEBUG 2024-02-23 13:08:09,033 [pN:main.1,p:73449,tN:Thread-2] Loaded history import tool: __IMPORT_HISTORY__ galaxy.tools.special_tools DEBUG 2024-02-23 13:08:09,036 [pN:main.1,p:73449,tN:Thread-2] Loaded data fetch tool: __DATA_FETCH__ galaxy.queue_worker INFO 2024-02-23 13:08:09,036 [pN:main.1,p:73449,tN:Thread-2] Queuing async task rebuild_toolbox_search_index for main.1. galaxy.queue_worker DEBUG 2024-02-23 13:08:09,112 [pN:main.1,p:73449,tN:Thread-2] Toolbox reload (245.340 ms) galaxy.queue_worker INFO 2024-02-23 13:08:09,112 [pN:main.1,p:73449,tN:Thread-2] Queuing async task rebuild_toolbox_search_index for main.1. galaxy.web_stack INFO 2024-02-23 13:08:09,134 [pN:main.1,p:73449,tN:Thread-2] Galaxy server instance 'main.1' is running [92m Serving on http://127.0.0.1:45699 [0m multipart.multipart DEBUG 2024-02-23 13:08:09,336 [pN:main.1,p:73449,tN:MainThread] Calling on_field_start with no data multipart.multipart DEBUG 2024-02-23 13:08:09,336 [pN:main.1,p:73449,tN:MainThread] Calling on_field_name with data[0:4] multipart.multipart DEBUG 2024-02-23 13:08:09,336 [pN:main.1,p:73449,tN:MainThread] Calling on_field_data with data[5:63] multipart.multipart DEBUG 2024-02-23 13:08:09,337 [pN:main.1,p:73449,tN:MainThread] Calling on_field_end with no data multipart.multipart DEBUG 2024-02-23 13:08:09,337 [pN:main.1,p:73449,tN:MainThread] Calling on_end with no data galaxy.tools INFO 2024-02-23 13:08:09,508 [pN:main.1,p:73449,tN:WSGI_2] Validated and populated state for tool request (11.339 ms) galaxy.tools.actions.upload DEBUG 2024-02-23 13:08:09,514 [pN:main.1,p:73449,tN:WSGI_2] Persisted uploads (0.138 ms) galaxy.tools.actions.upload DEBUG 2024-02-23 13:08:09,569 [pN:main.1,p:73449,tN:WSGI_2] Checked uploads (55.105 ms) galaxy.tools.actions.upload DEBUG 2024-02-23 13:08:09,572 [pN:main.1,p:73449,tN:WSGI_2] Created upload job (2.692 ms) galaxy.tools.execute DEBUG 2024-02-23 13:08:09,572 [pN:main.1,p:73449,tN:WSGI_2] Tool upload1 created job None (58.508 ms) galaxy.web_stack.handlers INFO 2024-02-23 13:08:09,591 [pN:main.1,p:73449,tN:WSGI_2] (Job[id=1,tool_id=upload1]) Handler '_default_' assigned using 'HANDLER_ASSIGNMENT_METHODS.DB_SKIP_LOCKED' assignment method galaxy.tools.execute DEBUG 2024-02-23 13:08:09,595 [pN:main.1,p:73449,tN:WSGI_2] Created 1 job(s) for tool upload1 request (86.887 ms) galaxy.jobs.mapper DEBUG 2024-02-23 13:08:10,003 [pN:main.1,p:73449,tN:JobHandlerQueue.monitor_thread] (1) Mapped job to destination id: docker_local galaxy.jobs.handler DEBUG 2024-02-23 13:08:10,007 [pN:main.1,p:73449,tN:JobHandlerQueue.monitor_thread] (1) Dispatching to local runner galaxy.jobs DEBUG 2024-02-23 13:08:10,017 [pN:main.1,p:73449,tN:JobHandlerQueue.monitor_thread] (1) Persisting job destination (destination id: docker_local) galaxy.jobs DEBUG 2024-02-23 13:08:10,027 [pN:main.1,p:73449,tN:JobHandlerQueue.monitor_thread] (1) Working directory for job is: /tmp/tmpcb4g3qga/job_working_directory/000/1 galaxy.jobs.runners DEBUG 2024-02-23 13:08:10,033 [pN:main.1,p:73449,tN:JobHandlerQueue.monitor_thread] Job [1] queued (25.746 ms) galaxy.jobs.handler INFO 2024-02-23 13:08:10,042 [pN:main.1,p:73449,tN:JobHandlerQueue.monitor_thread] (1) Job dispatched galaxy.queue_worker INFO 2024-02-23 13:08:10,123 [pN:main.1,p:73449,tN:Thread-1] Instance 'main.1' received 'rebuild_toolbox_search_index' task, executing now. galaxy.tools.search DEBUG 2024-02-23 13:08:10,123 [pN:main.1,p:73449,tN:Thread-1] Starting to build toolbox index of panel default. galaxy.tools.search DEBUG 2024-02-23 13:08:10,135 [pN:main.1,p:73449,tN:Thread-1] Toolbox index of panel default finished (11.545 ms) galaxy.tools.search DEBUG 2024-02-23 13:08:10,135 [pN:main.1,p:73449,tN:Thread-1] Starting to build toolbox index of panel ontology:edam_operations. galaxy.tools.search DEBUG 2024-02-23 13:08:10,140 [pN:main.1,p:73449,tN:Thread-1] Toolbox index of panel ontology:edam_operations finished (4.820 ms) galaxy.tools.search DEBUG 2024-02-23 13:08:10,141 [pN:main.1,p:73449,tN:Thread-1] Starting to build toolbox index of panel ontology:edam_topics. galaxy.tools.search DEBUG 2024-02-23 13:08:10,144 [pN:main.1,p:73449,tN:Thread-1] Toolbox index of panel ontology:edam_topics finished (3.156 ms) galaxy.queue_worker INFO 2024-02-23 13:08:10,151 [pN:main.1,p:73449,tN:Thread-1] Instance 'main.1' received 'rebuild_toolbox_search_index' task, executing now. galaxy.tools.search DEBUG 2024-02-23 13:08:10,151 [pN:main.1,p:73449,tN:Thread-1] Starting to build toolbox index of panel default. galaxy.tools.search DEBUG 2024-02-23 13:08:10,156 [pN:main.1,p:73449,tN:Thread-1] Toolbox index of panel default finished (4.966 ms) galaxy.tools.search DEBUG 2024-02-23 13:08:10,157 [pN:main.1,p:73449,tN:Thread-1] Starting to build toolbox index of panel ontology:edam_operations. galaxy.tools.search DEBUG 2024-02-23 13:08:10,162 [pN:main.1,p:73449,tN:Thread-1] Toolbox index of panel ontology:edam_operations finished (5.241 ms) galaxy.tools.search DEBUG 2024-02-23 13:08:10,162 [pN:main.1,p:73449,tN:Thread-1] Starting to build toolbox index of panel ontology:edam_topics. galaxy.tools.search DEBUG 2024-02-23 13:08:10,171 [pN:main.1,p:73449,tN:Thread-1] Toolbox index of panel ontology:edam_topics finished (8.195 ms) galaxy.jobs DEBUG 2024-02-23 13:08:10,206 [pN:main.1,p:73449,tN:LocalRunner.work_thread-0] Job wrapper for Job [1] prepared (153.017 ms) galaxy.tool_util.deps.containers INFO 2024-02-23 13:08:10,208 [pN:main.1,p:73449,tN:LocalRunner.work_thread-0] Checking with container resolver [ExplicitContainerResolver[]] found description [None] galaxy.tool_util.deps.containers INFO 2024-02-23 13:08:10,208 [pN:main.1,p:73449,tN:LocalRunner.work_thread-0] Checking with container resolver [CachedMulledDockerContainerResolver[namespace=biocontainers]] found description [None] galaxy.tool_util.deps.containers INFO 2024-02-23 13:08:10,208 [pN:main.1,p:73449,tN:LocalRunner.work_thread-0] Checking with container resolver [CachedMulledDockerContainerResolver[namespace=local]] found description [None] galaxy.tool_util.deps.containers INFO 2024-02-23 13:08:10,209 [pN:main.1,p:73449,tN:LocalRunner.work_thread-0] Checking with container resolver [MulledDockerContainerResolver[namespace=biocontainers]] found description [None] galaxy.tool_util.deps.containers INFO 2024-02-23 13:08:10,209 [pN:main.1,p:73449,tN:LocalRunner.work_thread-0] Checking with container resolver [BuildDockerContainerResolver[namespace=local]] found description [None] galaxy.jobs.command_factory INFO 2024-02-23 13:08:10,238 [pN:main.1,p:73449,tN:LocalRunner.work_thread-0] Built script [/tmp/tmpcb4g3qga/job_working_directory/000/1/tool_script.sh] for tool command [python '/scratch/rico/galaxy/tools/data_source/upload.py' '/scratch/rico/galaxy' '/tmp/tmpcb4g3qga/job_working_directory/000/1/registry.xml' '/tmp/tmpcb4g3qga/job_working_directory/000/1/upload_params.json' '1:/tmp/tmpcb4g3qga/job_working_directory/000/1/outputs/dataset_8346b28b-7368-4ba4-bc11-fb6aad7e77c9_files:/tmp/tmpcb4g3qga/job_working_directory/000/1/outputs/dataset_8346b28b-7368-4ba4-bc11-fb6aad7e77c9.dat'] galaxy.jobs.runners DEBUG 2024-02-23 13:08:10,329 [pN:main.1,p:73449,tN:LocalRunner.work_thread-0] (1) command is: mkdir -p working outputs configs if [ -d _working ]; then rm -rf working/ outputs/ configs/; cp -R _working working; cp -R _outputs outputs; cp -R _configs configs else cp -R working _working; cp -R outputs _outputs; cp -R configs _configs fi cd working; /bin/bash /tmp/tmpcb4g3qga/job_working_directory/000/1/tool_script.sh > '../outputs/tool_stdout' 2> '../outputs/tool_stderr'; return_code=$?; echo $return_code > /tmp/tmpcb4g3qga/job_working_directory/000/1/galaxy_1.ec; cd '/tmp/tmpcb4g3qga/job_working_directory/000/1'; [ "$GALAXY_VIRTUAL_ENV" = "None" ] && GALAXY_VIRTUAL_ENV="$_GALAXY_VIRTUAL_ENV"; _galaxy_setup_environment True; python metadata/set.py; sh -c "exit $return_code" galaxy.jobs.runners.local DEBUG 2024-02-23 13:08:10,352 [pN:main.1,p:73449,tN:LocalRunner.work_thread-0] (1) executing job script: /tmp/tmpcb4g3qga/job_working_directory/000/1/galaxy_1.sh galaxy.jobs.runners.util.process_groups DEBUG 2024-02-23 13:08:16,529 [pN:main.1,p:73449,tN:LocalRunner.work_thread-0] check_pg(): No process found in process group 73471 galaxy.jobs.runners.local DEBUG 2024-02-23 13:08:16,530 [pN:main.1,p:73449,tN:LocalRunner.work_thread-0] execution finished: /tmp/tmpcb4g3qga/job_working_directory/000/1/galaxy_1.sh galaxy.jobs DEBUG 2024-02-23 13:08:16,553 [pN:main.1,p:73449,tN:LocalRunner.work_thread-0] finish(): Moved /tmp/tmpcb4g3qga/job_working_directory/000/1/outputs/dataset_8346b28b-7368-4ba4-bc11-fb6aad7e77c9.dat to /tmp/tmpcb4g3qga/files/8/3/4/dataset_8346b28b-7368-4ba4-bc11-fb6aad7e77c9.dat galaxy.model.metadata DEBUG 2024-02-23 13:08:16,562 [pN:main.1,p:73449,tN:LocalRunner.work_thread-0] loading metadata from file for: HistoryDatasetAssociation 1 galaxy.jobs DEBUG 2024-02-23 13:08:16,617 [pN:main.1,p:73449,tN:LocalRunner.work_thread-0] job_wrapper.finish for job 1 executed (70.619 ms) galaxy.tools INFO 2024-02-23 13:08:16,664 [pN:main.1,p:73449,tN:WSGI_1] Validated and populated state for tool request (12.309 ms) galaxy.tools.actions INFO 2024-02-23 13:08:16,671 [pN:main.1,p:73449,tN:WSGI_1] Handled output named adaptor_report for tool ncbi_fcs_adaptor (3.210 ms) galaxy.tools.actions INFO 2024-02-23 13:08:16,674 [pN:main.1,p:73449,tN:WSGI_1] Handled output named clean_fasta for tool ncbi_fcs_adaptor (2.623 ms) galaxy.tools.actions INFO 2024-02-23 13:08:16,681 [pN:main.1,p:73449,tN:WSGI_1] Added output datasets to history (7.376 ms) galaxy.tools.actions INFO 2024-02-23 13:08:16,683 [pN:main.1,p:73449,tN:WSGI_1] Setup for job Job[unflushed,tool_id=ncbi_fcs_adaptor] complete, ready to be enqueued (1.395 ms) galaxy.tools.execute DEBUG 2024-02-23 13:08:16,683 [pN:main.1,p:73449,tN:WSGI_1] Tool ncbi_fcs_adaptor created job None (16.631 ms) galaxy.web_stack.handlers INFO 2024-02-23 13:08:16,705 [pN:main.1,p:73449,tN:WSGI_1] (Job[id=2,tool_id=ncbi_fcs_adaptor]) Handler '_default_' assigned using 'HANDLER_ASSIGNMENT_METHODS.DB_SKIP_LOCKED' assignment method galaxy.tools.execute DEBUG 2024-02-23 13:08:16,708 [pN:main.1,p:73449,tN:WSGI_1] Created 1 job(s) for tool ncbi_fcs_adaptor request (43.875 ms) galaxy.jobs.mapper DEBUG 2024-02-23 13:08:17,184 [pN:main.1,p:73449,tN:JobHandlerQueue.monitor_thread] (2) Mapped job to destination id: docker_local galaxy.jobs.handler DEBUG 2024-02-23 13:08:17,187 [pN:main.1,p:73449,tN:JobHandlerQueue.monitor_thread] (2) Dispatching to local runner galaxy.jobs DEBUG 2024-02-23 13:08:17,192 [pN:main.1,p:73449,tN:JobHandlerQueue.monitor_thread] (2) Persisting job destination (destination id: docker_local) galaxy.jobs DEBUG 2024-02-23 13:08:17,199 [pN:main.1,p:73449,tN:JobHandlerQueue.monitor_thread] (2) Working directory for job is: /tmp/tmpcb4g3qga/job_working_directory/000/2 galaxy.jobs.runners DEBUG 2024-02-23 13:08:17,206 [pN:main.1,p:73449,tN:JobHandlerQueue.monitor_thread] Job [2] queued (18.655 ms) galaxy.jobs.handler INFO 2024-02-23 13:08:17,217 [pN:main.1,p:73449,tN:JobHandlerQueue.monitor_thread] (2) Job dispatched galaxy.security.object_wrapper WARNING 2024-02-23 13:08:17,255 [pN:main.1,p:73449,tN:LocalRunner.work_thread-0] Unable to create dynamic subclass SafeStringWrapper__galaxy.model.none_like.None__NoneType__NotImplementedType__Number__SafeStringWrapper__ToolParameterValueWrapper__bool__bytearray__ellipsis for <class 'galaxy.model.none_like.NoneDataset'>, None: type() doesn't support MRO entry resolution; use types.new_class() galaxy.jobs DEBUG 2024-02-23 13:08:17,268 [pN:main.1,p:73449,tN:LocalRunner.work_thread-0] Job wrapper for Job [2] prepared (41.890 ms) galaxy.tool_util.deps.containers INFO 2024-02-23 13:08:17,268 [pN:main.1,p:73449,tN:LocalRunner.work_thread-0] Checking with container resolver [ExplicitContainerResolver[]] found description [ContainerDescription[identifier=ncbi/fcs-adaptor:0.5.0,type=docker]] galaxy.jobs.command_factory INFO 2024-02-23 13:08:17,304 [pN:main.1,p:73449,tN:LocalRunner.work_thread-0] Built script [/tmp/tmpcb4g3qga/job_working_directory/000/2/tool_script.sh] for tool command [/app/fcs/bin/av_screen_x -o "$(pwd)" '--prok' '/tmp/tmpcb4g3qga/files/8/3/4/dataset_8346b28b-7368-4ba4-bc11-fb6aad7e77c9.dat'] galaxy.jobs.runners DEBUG 2024-02-23 13:08:17,371 [pN:main.1,p:73449,tN:LocalRunner.work_thread-0] (2) command is: mkdir -p working outputs configs if [ -d _working ]; then rm -rf working/ outputs/ configs/; cp -R _working working; cp -R _outputs outputs; cp -R _configs configs else cp -R working _working; cp -R outputs _outputs; cp -R configs _configs fi cd working; _on_exit() { docker kill ed7f173e111a4a46b8e32e5b6284b151 &> /dev/null } trap _on_exit EXIT docker inspect ncbi/fcs-adaptor:0.5.0 > /dev/null 2>&1 [ $? -ne 0 ] && docker pull ncbi/fcs-adaptor:0.5.0 > /dev/null 2>&1 docker run -e "GALAXY_SLOTS=$GALAXY_SLOTS" -e "GALAXY_MEMORY_MB=$GALAXY_MEMORY_MB" -e "GALAXY_MEMORY_MB_PER_SLOT=$GALAXY_MEMORY_MB_PER_SLOT" -e "HOME=$HOME" -e "_GALAXY_JOB_HOME_DIR=$_GALAXY_JOB_HOME_DIR" -e "_GALAXY_JOB_TMP_DIR=$_GALAXY_JOB_TMP_DIR" -e "TMPDIR=$TMPDIR" -e "TMP=$TMP" -e "TEMP=$TEMP" --name ed7f173e111a4a46b8e32e5b6284b151 -v "$_GALAXY_JOB_TMP_DIR:$_GALAXY_JOB_TMP_DIR:rw" -v "$TMPDIR:$TMPDIR:rw" -v "$TMP:$TMP:rw" -v "$TEMP:$TEMP:rw" -v /scratch/rico/galaxy:/scratch/rico/galaxy:ro -v /scratch/rico/galaxytools/tools/ncbi_fcs_adaptor:/scratch/rico/galaxytools/tools/ncbi_fcs_adaptor:ro -v /tmp/tmpcb4g3qga/job_working_directory/000/2:/tmp/tmpcb4g3qga/job_working_directory/000/2:ro -v /tmp/tmpcb4g3qga/job_working_directory/000/2/outputs:/tmp/tmpcb4g3qga/job_working_directory/000/2/outputs:rw -v "$_GALAXY_JOB_HOME_DIR:$_GALAXY_JOB_HOME_DIR:rw" -v /tmp/tmpcb4g3qga/job_working_directory/000/2/working:/tmp/tmpcb4g3qga/job_working_directory/000/2/working:rw -v /tmp/tmpcb4g3qga/files:/tmp/tmpcb4g3qga/files:ro -v /scratch/rico/galaxy/tool-data:/scratch/rico/galaxy/tool-data:ro --cpus ${GALAXY_SLOTS:-1} -w /tmp/tmpcb4g3qga/job_working_directory/000/2/working --rm --user 1028:1028 ncbi/fcs-adaptor:0.5.0 /bin/sh /tmp/tmpcb4g3qga/job_working_directory/000/2/tool_script.sh > '../outputs/tool_stdout' 2> '../outputs/tool_stderr'; return_code=$?; echo $return_code > /tmp/tmpcb4g3qga/job_working_directory/000/2/galaxy_2.ec; if [ -f "/tmp/tmpcb4g3qga/job_working_directory/000/2/working/fcs_adaptor_report.txt" ] ; then cp "/tmp/tmpcb4g3qga/job_working_directory/000/2/working/fcs_adaptor_report.txt" "/tmp/tmpcb4g3qga/job_working_directory/000/2/outputs/dataset_ad6ed385-7ea5-4304-844d-28eb8215db3a.dat" ; fi; if [ -f "/tmp/tmpcb4g3qga/job_working_directory/000/2/working/cleaned_sequences/"*".dat" ] ; then cp "/tmp/tmpcb4g3qga/job_working_directory/000/2/working/cleaned_sequences/"*".dat" "/tmp/tmpcb4g3qga/job_working_directory/000/2/outputs/dataset_82681053-1c9b-4cc3-8301-1946931e8f25.dat" ; fi; cd '/tmp/tmpcb4g3qga/job_working_directory/000/2'; [ "$GALAXY_VIRTUAL_ENV" = "None" ] && GALAXY_VIRTUAL_ENV="$_GALAXY_VIRTUAL_ENV"; _galaxy_setup_environment True; python metadata/set.py; sh -c "exit $return_code" galaxy.jobs.runners.local DEBUG 2024-02-23 13:08:17,393 [pN:main.1,p:73449,tN:LocalRunner.work_thread-0] (2) executing job script: /tmp/tmpcb4g3qga/job_working_directory/000/2/galaxy_2.sh galaxy.jobs.runners.util.process_groups DEBUG 2024-02-23 13:09:07,443 [pN:main.1,p:73449,tN:LocalRunner.work_thread-0] check_pg(): No process found in process group 73627 galaxy.jobs.runners.local DEBUG 2024-02-23 13:09:07,444 [pN:main.1,p:73449,tN:LocalRunner.work_thread-0] execution finished: /tmp/tmpcb4g3qga/job_working_directory/000/2/galaxy_2.sh galaxy.jobs DEBUG 2024-02-23 13:09:07,468 [pN:main.1,p:73449,tN:LocalRunner.work_thread-0] finish(): Moved /tmp/tmpcb4g3qga/job_working_directory/000/2/outputs/dataset_ad6ed385-7ea5-4304-844d-28eb8215db3a.dat to /tmp/tmpcb4g3qga/files/a/d/6/dataset_ad6ed385-7ea5-4304-844d-28eb8215db3a.dat galaxy.jobs DEBUG 2024-02-23 13:09:07,468 [pN:main.1,p:73449,tN:LocalRunner.work_thread-0] finish(): Moved /tmp/tmpcb4g3qga/job_working_directory/000/2/outputs/dataset_82681053-1c9b-4cc3-8301-1946931e8f25.dat to /tmp/tmpcb4g3qga/files/8/2/6/dataset_82681053-1c9b-4cc3-8301-1946931e8f25.dat galaxy.model.metadata DEBUG 2024-02-23 13:09:07,480 [pN:main.1,p:73449,tN:LocalRunner.work_thread-0] loading metadata from file for: HistoryDatasetAssociation 2 galaxy.model.metadata DEBUG 2024-02-23 13:09:07,487 [pN:main.1,p:73449,tN:LocalRunner.work_thread-0] loading metadata from file for: HistoryDatasetAssociation 3 galaxy.jobs DEBUG 2024-02-23 13:09:07,518 [pN:main.1,p:73449,tN:LocalRunner.work_thread-0] job_wrapper.finish for job 2 executed (55.826 ms) multipart.multipart DEBUG 2024-02-23 13:09:08,238 [pN:main.1,p:73449,tN:MainThread] Calling on_field_start with no data multipart.multipart DEBUG 2024-02-23 13:09:08,238 [pN:main.1,p:73449,tN:MainThread] Calling on_field_name with data[0:4] multipart.multipart DEBUG 2024-02-23 13:09:08,238 [pN:main.1,p:73449,tN:MainThread] Calling on_field_data with data[5:63] multipart.multipart DEBUG 2024-02-23 13:09:08,238 [pN:main.1,p:73449,tN:MainThread] Calling on_field_end with no data multipart.multipart DEBUG 2024-02-23 13:09:08,238 [pN:main.1,p:73449,tN:MainThread] Calling on_end with no data galaxy.tools INFO 2024-02-23 13:09:08,372 [pN:main.1,p:73449,tN:WSGI_8] Validated and populated state for tool request (7.386 ms) galaxy.tools.actions.upload DEBUG 2024-02-23 13:09:08,375 [pN:main.1,p:73449,tN:WSGI_8] Persisted uploads (0.123 ms) galaxy.tools.actions.upload DEBUG 2024-02-23 13:09:08,436 [pN:main.1,p:73449,tN:WSGI_8] Checked uploads (61.223 ms) galaxy.tools.actions.upload DEBUG 2024-02-23 13:09:08,439 [pN:main.1,p:73449,tN:WSGI_8] Created upload job (2.191 ms) galaxy.tools.execute DEBUG 2024-02-23 13:09:08,439 [pN:main.1,p:73449,tN:WSGI_8] Tool upload1 created job None (64.062 ms) galaxy.web_stack.handlers INFO 2024-02-23 13:09:08,452 [pN:main.1,p:73449,tN:WSGI_8] (Job[id=3,tool_id=upload1]) Handler '_default_' assigned using 'HANDLER_ASSIGNMENT_METHODS.DB_SKIP_LOCKED' assignment method galaxy.tools.execute DEBUG 2024-02-23 13:09:08,456 [pN:main.1,p:73449,tN:WSGI_8] Created 1 job(s) for tool upload1 request (83.236 ms) galaxy.jobs.mapper DEBUG 2024-02-23 13:09:09,438 [pN:main.1,p:73449,tN:JobHandlerQueue.monitor_thread] (3) Mapped job to destination id: docker_local galaxy.jobs.handler DEBUG 2024-02-23 13:09:09,441 [pN:main.1,p:73449,tN:JobHandlerQueue.monitor_thread] (3) Dispatching to local runner galaxy.jobs DEBUG 2024-02-23 13:09:09,447 [pN:main.1,p:73449,tN:JobHandlerQueue.monitor_thread] (3) Persisting job destination (destination id: docker_local) galaxy.jobs DEBUG 2024-02-23 13:09:09,452 [pN:main.1,p:73449,tN:JobHandlerQueue.monitor_thread] (3) Working directory for job is: /tmp/tmpcb4g3qga/job_working_directory/000/3 galaxy.jobs.runners DEBUG 2024-02-23 13:09:09,458 [pN:main.1,p:73449,tN:JobHandlerQueue.monitor_thread] Job [3] queued (16.448 ms) galaxy.jobs.handler INFO 2024-02-23 13:09:09,469 [pN:main.1,p:73449,tN:JobHandlerQueue.monitor_thread] (3) Job dispatched galaxy.jobs DEBUG 2024-02-23 13:09:09,518 [pN:main.1,p:73449,tN:LocalRunner.work_thread-0] Job wrapper for Job [3] prepared (40.235 ms) galaxy.tool_util.deps.containers INFO 2024-02-23 13:09:09,518 [pN:main.1,p:73449,tN:LocalRunner.work_thread-0] Checking with container resolver [ExplicitContainerResolver[]] found description [None] galaxy.tool_util.deps.containers INFO 2024-02-23 13:09:09,519 [pN:main.1,p:73449,tN:LocalRunner.work_thread-0] Checking with container resolver [CachedMulledDockerContainerResolver[namespace=biocontainers]] found description [None] galaxy.tool_util.deps.containers INFO 2024-02-23 13:09:09,519 [pN:main.1,p:73449,tN:LocalRunner.work_thread-0] Checking with container resolver [CachedMulledDockerContainerResolver[namespace=local]] found description [None] galaxy.tool_util.deps.containers INFO 2024-02-23 13:09:09,519 [pN:main.1,p:73449,tN:LocalRunner.work_thread-0] Checking with container resolver [MulledDockerContainerResolver[namespace=biocontainers]] found description [None] galaxy.tool_util.deps.containers INFO 2024-02-23 13:09:09,519 [pN:main.1,p:73449,tN:LocalRunner.work_thread-0] Checking with container resolver [BuildDockerContainerResolver[namespace=local]] found description [None] galaxy.jobs.command_factory INFO 2024-02-23 13:09:09,545 [pN:main.1,p:73449,tN:LocalRunner.work_thread-0] Built script [/tmp/tmpcb4g3qga/job_working_directory/000/3/tool_script.sh] for tool command [python '/scratch/rico/galaxy/tools/data_source/upload.py' '/scratch/rico/galaxy' '/tmp/tmpcb4g3qga/job_working_directory/000/3/registry.xml' '/tmp/tmpcb4g3qga/job_working_directory/000/3/upload_params.json' '4:/tmp/tmpcb4g3qga/job_working_directory/000/3/outputs/dataset_fc42c29c-8c8a-41a3-8529-54f958c0d9bf_files:/tmp/tmpcb4g3qga/job_working_directory/000/3/outputs/dataset_fc42c29c-8c8a-41a3-8529-54f958c0d9bf.dat'] galaxy.jobs.runners DEBUG 2024-02-23 13:09:09,571 [pN:main.1,p:73449,tN:LocalRunner.work_thread-0] (3) command is: mkdir -p working outputs configs if [ -d _working ]; then rm -rf working/ outputs/ configs/; cp -R _working working; cp -R _outputs outputs; cp -R _configs configs else cp -R working _working; cp -R outputs _outputs; cp -R configs _configs fi cd working; /bin/bash /tmp/tmpcb4g3qga/job_working_directory/000/3/tool_script.sh > '../outputs/tool_stdout' 2> '../outputs/tool_stderr'; return_code=$?; echo $return_code > /tmp/tmpcb4g3qga/job_working_directory/000/3/galaxy_3.ec; cd '/tmp/tmpcb4g3qga/job_working_directory/000/3'; [ "$GALAXY_VIRTUAL_ENV" = "None" ] && GALAXY_VIRTUAL_ENV="$_GALAXY_VIRTUAL_ENV"; _galaxy_setup_environment True; python metadata/set.py; sh -c "exit $return_code" galaxy.jobs.runners.local DEBUG 2024-02-23 13:09:09,593 [pN:main.1,p:73449,tN:LocalRunner.work_thread-0] (3) executing job script: /tmp/tmpcb4g3qga/job_working_directory/000/3/galaxy_3.sh galaxy.jobs.runners.util.process_groups DEBUG 2024-02-23 13:09:15,780 [pN:main.1,p:73449,tN:LocalRunner.work_thread-0] check_pg(): No process found in process group 73939 galaxy.jobs.runners.local DEBUG 2024-02-23 13:09:15,780 [pN:main.1,p:73449,tN:LocalRunner.work_thread-0] execution finished: /tmp/tmpcb4g3qga/job_working_directory/000/3/galaxy_3.sh galaxy.jobs DEBUG 2024-02-23 13:09:15,804 [pN:main.1,p:73449,tN:LocalRunner.work_thread-0] finish(): Moved /tmp/tmpcb4g3qga/job_working_directory/000/3/outputs/dataset_fc42c29c-8c8a-41a3-8529-54f958c0d9bf.dat to /tmp/tmpcb4g3qga/files/f/c/4/dataset_fc42c29c-8c8a-41a3-8529-54f958c0d9bf.dat galaxy.model.metadata DEBUG 2024-02-23 13:09:15,811 [pN:main.1,p:73449,tN:LocalRunner.work_thread-0] loading metadata from file for: HistoryDatasetAssociation 4 galaxy.jobs DEBUG 2024-02-23 13:09:15,839 [pN:main.1,p:73449,tN:LocalRunner.work_thread-0] job_wrapper.finish for job 3 executed (41.729 ms) galaxy.tools INFO 2024-02-23 13:09:15,955 [pN:main.1,p:73449,tN:WSGI_5] Validated and populated state for tool request (4.001 ms) galaxy.tools.actions INFO 2024-02-23 13:09:15,959 [pN:main.1,p:73449,tN:WSGI_5] Handled output named adaptor_report for tool ncbi_fcs_adaptor (1.009 ms) galaxy.tools.actions INFO 2024-02-23 13:09:15,960 [pN:main.1,p:73449,tN:WSGI_5] Handled output named clean_fasta for tool ncbi_fcs_adaptor (0.689 ms) galaxy.tools.actions DEBUG 2024-02-23 13:09:15,960 [pN:main.1,p:73449,tN:WSGI_5] Tool ncbi_fcs_adaptor output adaptor_log: dataset output filter (advanced['optional_log'] is not None and 'adaptor_log' in advanced['optional_log'].split(',')) failed: 'list' object has no attribute 'split' galaxy.tools.actions INFO 2024-02-23 13:09:15,963 [pN:main.1,p:73449,tN:WSGI_5] Handled output named adaptor_log for tool ncbi_fcs_adaptor (2.806 ms) galaxy.tools.actions DEBUG 2024-02-23 13:09:15,963 [pN:main.1,p:73449,tN:WSGI_5] Tool ncbi_fcs_adaptor output validate_fasta_log: dataset output filter (advanced['optional_log'] is not None and 'validate_fasta_log' in advanced['optional_log'].split(',')) failed: 'list' object has no attribute 'split' galaxy.tools.actions INFO 2024-02-23 13:09:15,966 [pN:main.1,p:73449,tN:WSGI_5] Handled output named validate_fasta_log for tool ncbi_fcs_adaptor (2.437 ms) galaxy.tools.actions INFO 2024-02-23 13:09:15,973 [pN:main.1,p:73449,tN:WSGI_5] Added output datasets to history (7.460 ms) galaxy.tools.actions INFO 2024-02-23 13:09:15,975 [pN:main.1,p:73449,tN:WSGI_5] Setup for job Job[unflushed,tool_id=ncbi_fcs_adaptor] complete, ready to be enqueued (1.927 ms) galaxy.tools.execute DEBUG 2024-02-23 13:09:15,975 [pN:main.1,p:73449,tN:WSGI_5] Tool ncbi_fcs_adaptor created job None (18.870 ms) galaxy.web_stack.handlers INFO 2024-02-23 13:09:15,995 [pN:main.1,p:73449,tN:WSGI_5] (Job[id=4,tool_id=ncbi_fcs_adaptor]) Handler '_default_' assigned using 'HANDLER_ASSIGNMENT_METHODS.DB_SKIP_LOCKED' assignment method galaxy.tools.execute DEBUG 2024-02-23 13:09:15,999 [pN:main.1,p:73449,tN:WSGI_5] Created 1 job(s) for tool ncbi_fcs_adaptor request (44.554 ms) galaxy.jobs.mapper DEBUG 2024-02-23 13:09:16,643 [pN:main.1,p:73449,tN:JobHandlerQueue.monitor_thread] (4) Mapped job to destination id: docker_local galaxy.jobs.handler DEBUG 2024-02-23 13:09:16,646 [pN:main.1,p:73449,tN:JobHandlerQueue.monitor_thread] (4) Dispatching to local runner galaxy.jobs DEBUG 2024-02-23 13:09:16,652 [pN:main.1,p:73449,tN:JobHandlerQueue.monitor_thread] (4) Persisting job destination (destination id: docker_local) galaxy.jobs DEBUG 2024-02-23 13:09:16,657 [pN:main.1,p:73449,tN:JobHandlerQueue.monitor_thread] (4) Working directory for job is: /tmp/tmpcb4g3qga/job_working_directory/000/4 galaxy.jobs.runners DEBUG 2024-02-23 13:09:16,664 [pN:main.1,p:73449,tN:JobHandlerQueue.monitor_thread] Job [4] queued (17.581 ms) galaxy.jobs.handler INFO 2024-02-23 13:09:16,675 [pN:main.1,p:73449,tN:JobHandlerQueue.monitor_thread] (4) Job dispatched galaxy.jobs DEBUG 2024-02-23 13:09:16,719 [pN:main.1,p:73449,tN:LocalRunner.work_thread-1] Job wrapper for Job [4] prepared (38.445 ms) galaxy.tool_util.deps.containers INFO 2024-02-23 13:09:16,720 [pN:main.1,p:73449,tN:LocalRunner.work_thread-1] Checking with container resolver [ExplicitContainerResolver[]] found description [ContainerDescription[identifier=ncbi/fcs-adaptor:0.5.0,type=docker]] galaxy.jobs.command_factory INFO 2024-02-23 13:09:16,754 [pN:main.1,p:73449,tN:LocalRunner.work_thread-1] Built script [/tmp/tmpcb4g3qga/job_working_directory/000/4/tool_script.sh] for tool command [/app/fcs/bin/av_screen_x -o "$(pwd)" '--prok' '/tmp/tmpcb4g3qga/files/f/c/4/dataset_fc42c29c-8c8a-41a3-8529-54f958c0d9bf.dat'] galaxy.jobs.runners DEBUG 2024-02-23 13:09:16,801 [pN:main.1,p:73449,tN:LocalRunner.work_thread-1] (4) command is: mkdir -p working outputs configs if [ -d _working ]; then rm -rf working/ outputs/ configs/; cp -R _working working; cp -R _outputs outputs; cp -R _configs configs else cp -R working _working; cp -R outputs _outputs; cp -R configs _configs fi cd working; _on_exit() { docker kill 713cf55fdfca4b289b354b6ec6c008f4 &> /dev/null } trap _on_exit EXIT docker inspect ncbi/fcs-adaptor:0.5.0 > /dev/null 2>&1 [ $? -ne 0 ] && docker pull ncbi/fcs-adaptor:0.5.0 > /dev/null 2>&1 docker run -e "GALAXY_SLOTS=$GALAXY_SLOTS" -e "GALAXY_MEMORY_MB=$GALAXY_MEMORY_MB" -e "GALAXY_MEMORY_MB_PER_SLOT=$GALAXY_MEMORY_MB_PER_SLOT" -e "HOME=$HOME" -e "_GALAXY_JOB_HOME_DIR=$_GALAXY_JOB_HOME_DIR" -e "_GALAXY_JOB_TMP_DIR=$_GALAXY_JOB_TMP_DIR" -e "TMPDIR=$TMPDIR" -e "TMP=$TMP" -e "TEMP=$TEMP" --name 713cf55fdfca4b289b354b6ec6c008f4 -v "$_GALAXY_JOB_TMP_DIR:$_GALAXY_JOB_TMP_DIR:rw" -v "$TMPDIR:$TMPDIR:rw" -v "$TMP:$TMP:rw" -v "$TEMP:$TEMP:rw" -v /scratch/rico/galaxy:/scratch/rico/galaxy:ro -v /scratch/rico/galaxytools/tools/ncbi_fcs_adaptor:/scratch/rico/galaxytools/tools/ncbi_fcs_adaptor:ro -v /tmp/tmpcb4g3qga/job_working_directory/000/4:/tmp/tmpcb4g3qga/job_working_directory/000/4:ro -v /tmp/tmpcb4g3qga/job_working_directory/000/4/outputs:/tmp/tmpcb4g3qga/job_working_directory/000/4/outputs:rw -v "$_GALAXY_JOB_HOME_DIR:$_GALAXY_JOB_HOME_DIR:rw" -v /tmp/tmpcb4g3qga/job_working_directory/000/4/working:/tmp/tmpcb4g3qga/job_working_directory/000/4/working:rw -v /tmp/tmpcb4g3qga/files:/tmp/tmpcb4g3qga/files:ro -v /scratch/rico/galaxy/tool-data:/scratch/rico/galaxy/tool-data:ro --cpus ${GALAXY_SLOTS:-1} -w /tmp/tmpcb4g3qga/job_working_directory/000/4/working --rm --user 1028:1028 ncbi/fcs-adaptor:0.5.0 /bin/sh /tmp/tmpcb4g3qga/job_working_directory/000/4/tool_script.sh > '../outputs/tool_stdout' 2> '../outputs/tool_stderr'; return_code=$?; echo $return_code > /tmp/tmpcb4g3qga/job_working_directory/000/4/galaxy_4.ec; if [ -f "/tmp/tmpcb4g3qga/job_working_directory/000/4/working/fcs_adaptor_report.txt" ] ; then cp "/tmp/tmpcb4g3qga/job_working_directory/000/4/working/fcs_adaptor_report.txt" "/tmp/tmpcb4g3qga/job_working_directory/000/4/outputs/dataset_6a4a8934-d778-4ecd-8c28-14e5ab8e7772.dat" ; fi; if [ -f "/tmp/tmpcb4g3qga/job_working_directory/000/4/working/cleaned_sequences/"*".dat" ] ; then cp "/tmp/tmpcb4g3qga/job_working_directory/000/4/working/cleaned_sequences/"*".dat" "/tmp/tmpcb4g3qga/job_working_directory/000/4/outputs/dataset_afaf8650-15ba-417a-ab4b-433ba85d77a2.dat" ; fi; if [ -f "/tmp/tmpcb4g3qga/job_working_directory/000/4/working/fcs_adaptor.log" ] ; then cp "/tmp/tmpcb4g3qga/job_working_directory/000/4/working/fcs_adaptor.log" "/tmp/tmpcb4g3qga/job_working_directory/000/4/outputs/dataset_0617e59a-99eb-4562-b1e2-ea6ae59c8276.dat" ; fi; if [ -f "/tmp/tmpcb4g3qga/job_working_directory/000/4/working/validate_fasta.txt" ] ; then cp "/tmp/tmpcb4g3qga/job_working_directory/000/4/working/validate_fasta.txt" "/tmp/tmpcb4g3qga/job_working_directory/000/4/outputs/dataset_9c11713d-b338-47c2-b62f-aedd31eaaa4e.dat" ; fi; cd '/tmp/tmpcb4g3qga/job_working_directory/000/4'; [ "$GALAXY_VIRTUAL_ENV" = "None" ] && GALAXY_VIRTUAL_ENV="$_GALAXY_VIRTUAL_ENV"; _galaxy_setup_environment True; python metadata/set.py; sh -c "exit $return_code" galaxy.jobs.runners.local DEBUG 2024-02-23 13:09:16,823 [pN:main.1,p:73449,tN:LocalRunner.work_thread-1] (4) executing job script: /tmp/tmpcb4g3qga/job_working_directory/000/4/galaxy_4.sh galaxy.jobs.runners.util.process_groups DEBUG 2024-02-23 13:10:06,458 [pN:main.1,p:73449,tN:LocalRunner.work_thread-1] check_pg(): No process found in process group 74094 galaxy.jobs.runners.local DEBUG 2024-02-23 13:10:06,460 [pN:main.1,p:73449,tN:LocalRunner.work_thread-1] execution finished: /tmp/tmpcb4g3qga/job_working_directory/000/4/galaxy_4.sh galaxy.jobs DEBUG 2024-02-23 13:10:06,484 [pN:main.1,p:73449,tN:LocalRunner.work_thread-1] finish(): Moved /tmp/tmpcb4g3qga/job_working_directory/000/4/outputs/dataset_6a4a8934-d778-4ecd-8c28-14e5ab8e7772.dat to /tmp/tmpcb4g3qga/files/6/a/4/dataset_6a4a8934-d778-4ecd-8c28-14e5ab8e7772.dat galaxy.jobs DEBUG 2024-02-23 13:10:06,484 [pN:main.1,p:73449,tN:LocalRunner.work_thread-1] finish(): Moved /tmp/tmpcb4g3qga/job_working_directory/000/4/outputs/dataset_afaf8650-15ba-417a-ab4b-433ba85d77a2.dat to /tmp/tmpcb4g3qga/files/a/f/a/dataset_afaf8650-15ba-417a-ab4b-433ba85d77a2.dat galaxy.jobs DEBUG 2024-02-23 13:10:06,484 [pN:main.1,p:73449,tN:LocalRunner.work_thread-1] finish(): Moved /tmp/tmpcb4g3qga/job_working_directory/000/4/outputs/dataset_0617e59a-99eb-4562-b1e2-ea6ae59c8276.dat to /tmp/tmpcb4g3qga/files/0/6/1/dataset_0617e59a-99eb-4562-b1e2-ea6ae59c8276.dat galaxy.jobs DEBUG 2024-02-23 13:10:06,484 [pN:main.1,p:73449,tN:LocalRunner.work_thread-1] finish(): Moved /tmp/tmpcb4g3qga/job_working_directory/000/4/outputs/dataset_9c11713d-b338-47c2-b62f-aedd31eaaa4e.dat to /tmp/tmpcb4g3qga/files/9/c/1/dataset_9c11713d-b338-47c2-b62f-aedd31eaaa4e.dat galaxy.model.metadata DEBUG 2024-02-23 13:10:06,493 [pN:main.1,p:73449,tN:LocalRunner.work_thread-1] loading metadata from file for: HistoryDatasetAssociation 5 galaxy.model.metadata DEBUG 2024-02-23 13:10:06,497 [pN:main.1,p:73449,tN:LocalRunner.work_thread-1] loading metadata from file for: HistoryDatasetAssociation 6 galaxy.model.metadata DEBUG 2024-02-23 13:10:06,500 [pN:main.1,p:73449,tN:LocalRunner.work_thread-1] loading metadata from file for: HistoryDatasetAssociation 7 galaxy.model.metadata DEBUG 2024-02-23 13:10:06,523 [pN:main.1,p:73449,tN:LocalRunner.work_thread-1] loading metadata from file for: HistoryDatasetAssociation 8 galaxy.jobs DEBUG 2024-02-23 13:10:06,583 [pN:main.1,p:73449,tN:LocalRunner.work_thread-1] job_wrapper.finish for job 4 executed (104.537 ms) galaxy.queue_worker INFO 2024-02-23 13:10:08,737 [pN:main.1,p:73449,tN:MainThread] Sending reconfigure_watcher control task. galaxy.util.monitors DEBUG 2024-02-23 13:10:08,752 [pN:main.1,p:73449,tN:MainThread] Joining monitor thread galaxy.jobs.handler INFO 2024-02-23 13:10:08,752 [pN:main.1,p:73449,tN:MainThread] sending stop signal to worker thread galaxy.util.monitors DEBUG 2024-02-23 13:10:08,752 [pN:main.1,p:73449,tN:MainThread] Joining monitor thread galaxy.jobs.handler INFO 2024-02-23 13:10:08,753 [pN:main.1,p:73449,tN:MainThread] job handler queue stopped galaxy.jobs.runners INFO 2024-02-23 13:10:08,753 [pN:main.1,p:73449,tN:MainThread] LocalRunner: Sending stop signal to 4 job worker threads galaxy.jobs.runners INFO 2024-02-23 13:10:08,753 [pN:main.1,p:73449,tN:MainThread] Waiting up to 30 seconds for job worker threads to shutdown... galaxy.jobs.runners DEBUG 2024-02-23 13:10:08,755 [pN:main.1,p:73449,tN:MainThread] Job worker thread terminated: LocalRunner.work_thread-0 galaxy.jobs.runners INFO 2024-02-23 13:10:08,755 [pN:main.1,p:73449,tN:MainThread] All job worker threads shutdown cleanly galaxy.jobs.handler INFO 2024-02-23 13:10:08,755 [pN:main.1,p:73449,tN:MainThread] sending stop signal to worker thread galaxy.util.monitors DEBUG 2024-02-23 13:10:08,755 [pN:main.1,p:73449,tN:MainThread] Joining monitor thread galaxy.jobs.handler INFO 2024-02-23 13:10:08,755 [pN:main.1,p:73449,tN:MainThread] job handler stop queue stopped galaxy.jobs DEBUG 2024-02-23 13:13:44,712 [pN:main,p:74649,tN:MainThread] Loading job configuration from /scratch/rico/galaxytools/tools/ncbi_fcs_adaptor/planemo_job_conf.xml galaxy.jobs DEBUG 2024-02-23 13:13:44,713 [pN:main,p:74649,tN:MainThread] Read job configuration from file: /scratch/rico/galaxytools/tools/ncbi_fcs_adaptor/planemo_job_conf.xml galaxy.web_stack.handlers INFO 2024-02-23 13:13:44,724 [pN:main,p:74649,tN:MainThread] JobConfiguration: No job handler assignment method is set, defaulting to 'HANDLER_ASSIGNMENT_METHODS.DB_SKIP_LOCKED', set the `assign_with` attribute on <handlers> to override the default galaxy.jobs INFO 2024-02-23 13:13:44,724 [pN:main,p:74649,tN:MainThread] Job handler assignment methods set to: db-skip-locked galaxy.web_stack.handlers DEBUG 2024-02-23 13:13:44,725 [pN:main,p:74649,tN:MainThread] default set to child with id or tag 'docker_local' galaxy.jobs DEBUG 2024-02-23 13:13:44,725 [pN:main,p:74649,tN:MainThread] Done loading job configuration galaxy.security.vault WARNING 2024-02-23 13:13:44,906 [pN:main,p:74649,tN:MainThread] No vault configured. We recommend defining the vault_config_file setting in galaxy.yml galaxy.datatypes.registry DEBUG 2024-02-23 13:13:44,948 [pN:main,p:74649,tN:MainThread] Loading datatypes from /scratch/rico/galaxy/lib/galaxy/config/sample/datatypes_conf.xml.sample galaxy.datatypes.registry DEBUG 2024-02-23 13:13:44,949 [pN:main,p:74649,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension source.h. galaxy.datatypes.registry DEBUG 2024-02-23 13:13:44,950 [pN:main,p:74649,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension source.c. galaxy.datatypes.registry DEBUG 2024-02-23 13:13:44,950 [pN:main,p:74649,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension source.cpp. galaxy.datatypes.registry DEBUG 2024-02-23 13:13:44,950 [pN:main,p:74649,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension source.py. galaxy.datatypes.registry DEBUG 2024-02-23 13:13:44,950 [pN:main,p:74649,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension source.go. galaxy.datatypes.registry DEBUG 2024-02-23 13:13:44,950 [pN:main,p:74649,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension source.rs. galaxy.datatypes.registry DEBUG 2024-02-23 13:13:44,950 [pN:main,p:74649,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension source.cs. galaxy.datatypes.registry DEBUG 2024-02-23 13:13:44,950 [pN:main,p:74649,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:Binary from the datatype registry for extension hep.root. galaxy.datatypes.registry DEBUG 2024-02-23 13:13:44,951 [pN:main,p:74649,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:JP2 from the datatype registry for extension jp2. galaxy.datatypes.registry DEBUG 2024-02-23 13:13:44,951 [pN:main,p:74649,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:Ab1 from the datatype registry for extension ab1. galaxy.datatypes.registry DEBUG 2024-02-23 13:13:44,951 [pN:main,p:74649,tN:MainThread] Retrieved datatype module galaxy.datatypes.assembly:Amos from the datatype registry for extension afg. galaxy.datatypes.registry DEBUG 2024-02-23 13:13:44,952 [pN:main,p:74649,tN:MainThread] Retrieved datatype module galaxy.datatypes.goldenpath:GoldenPath from the datatype registry for extension agp. galaxy.datatypes.registry DEBUG 2024-02-23 13:13:44,953 [pN:main,p:74649,tN:MainThread] Retrieved datatype module galaxy.datatypes.anvio:AnvioComposite from the datatype registry for extension anvio_cog_profile. galaxy.datatypes.registry DEBUG 2024-02-23 13:13:44,953 [pN:main,p:74649,tN:MainThread] Retrieved datatype module galaxy.datatypes.anvio:AnvioComposite from the datatype registry for extension anvio_composite. galaxy.datatypes.registry DEBUG 2024-02-23 13:13:44,953 [pN:main,p:74649,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:Data from the datatype registry for extension anvio_classifier. galaxy.datatypes.registry DEBUG 2024-02-23 13:13:44,953 [pN:main,p:74649,tN:MainThread] Retrieved datatype module galaxy.datatypes.anvio:AnvioContigsDB from the datatype registry for extension anvio_contigs_db. galaxy.datatypes.registry DEBUG 2024-02-23 13:13:44,953 [pN:main,p:74649,tN:MainThread] Retrieved datatype module galaxy.datatypes.anvio:AnvioDB from the datatype registry for extension anvio_db. galaxy.datatypes.registry DEBUG 2024-02-23 13:13:44,954 [pN:main,p:74649,tN:MainThread] Retrieved datatype module galaxy.datatypes.anvio:AnvioGenomesDB from the datatype registry for extension anvio_genomes_db. galaxy.datatypes.registry DEBUG 2024-02-23 13:13:44,954 [pN:main,p:74649,tN:MainThread] Retrieved datatype module galaxy.datatypes.anvio:AnvioPanDB from the datatype registry for extension anvio_pan_db. galaxy.datatypes.registry DEBUG 2024-02-23 13:13:44,954 [pN:main,p:74649,tN:MainThread] Retrieved datatype module galaxy.datatypes.anvio:AnvioComposite from the datatype registry for extension anvio_pfam_profile. galaxy.datatypes.registry DEBUG 2024-02-23 13:13:44,954 [pN:main,p:74649,tN:MainThread] Retrieved datatype module galaxy.datatypes.anvio:AnvioProfileDB from the datatype registry for extension anvio_profile_db. galaxy.datatypes.registry DEBUG 2024-02-23 13:13:44,954 [pN:main,p:74649,tN:MainThread] Retrieved datatype module galaxy.datatypes.anvio:AnvioSamplesDB from the datatype registry for extension anvio_samples_db. galaxy.datatypes.registry DEBUG 2024-02-23 13:13:44,954 [pN:main,p:74649,tN:MainThread] Retrieved datatype module galaxy.datatypes.text:Json from the datatype registry for extension anvio_state. galaxy.datatypes.registry DEBUG 2024-02-23 13:13:44,954 [pN:main,p:74649,tN:MainThread] Retrieved datatype module galaxy.datatypes.anvio:AnvioStructureDB from the datatype registry for extension anvio_structure_db. galaxy.datatypes.registry DEBUG 2024-02-23 13:13:44,954 [pN:main,p:74649,tN:MainThread] Retrieved datatype module galaxy.datatypes.tabular:TSV from the datatype registry for extension anvio_variability. galaxy.datatypes.registry DEBUG 2024-02-23 13:13:44,955 [pN:main,p:74649,tN:MainThread] Retrieved datatype module galaxy.datatypes.text:Arff from the datatype registry for extension arff. galaxy.datatypes.registry DEBUG 2024-02-23 13:13:44,955 [pN:main,p:74649,tN:MainThread] Retrieved datatype module galaxy.datatypes.text:Paf from the datatype registry for extension paf. galaxy.datatypes.registry DEBUG 2024-02-23 13:13:44,955 [pN:main,p:74649,tN:MainThread] Retrieved datatype module galaxy.datatypes.text:Gfa1 from the datatype registry for extension gfa1. galaxy.datatypes.registry DEBUG 2024-02-23 13:13:44,955 [pN:main,p:74649,tN:MainThread] Retrieved datatype module galaxy.datatypes.text:Gfa2 from the datatype registry for extension gfa2. galaxy.datatypes.registry DEBUG 2024-02-23 13:13:44,955 [pN:main,p:74649,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:GenericAsn1 from the datatype registry for extension asn1. galaxy.datatypes.registry DEBUG 2024-02-23 13:13:44,955 [pN:main,p:74649,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:GenericAsn1Binary from the datatype registry for extension asn1-binary. galaxy.datatypes.registry DEBUG 2024-02-23 13:13:44,955 [pN:main,p:74649,tN:MainThread] Retrieved datatype module galaxy.datatypes.sequence:Axt from the datatype registry for extension axt. galaxy.datatypes.registry DEBUG 2024-02-23 13:13:44,955 [pN:main,p:74649,tN:MainThread] Retrieved datatype module galaxy.datatypes.tabular:FeatureLocationIndex from the datatype registry for extension fli. galaxy.datatypes.registry DEBUG 2024-02-23 13:13:44,955 [pN:main,p:74649,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:Bam from the datatype registry for extension bam. galaxy.datatypes.registry DEBUG 2024-02-23 13:13:44,956 [pN:main,p:74649,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:Binary from the datatype registry for extension bai. galaxy.datatypes.registry DEBUG 2024-02-23 13:13:44,956 [pN:main,p:74649,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:BamInputSorted from the datatype registry for extension qname_input_sorted.bam. galaxy.datatypes.registry DEBUG 2024-02-23 13:13:44,956 [pN:main,p:74649,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:BamQuerynameSorted from the datatype registry for extension qname_sorted.bam. galaxy.datatypes.registry DEBUG 2024-02-23 13:13:44,956 [pN:main,p:74649,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:BamNative from the datatype registry for extension unsorted.bam. galaxy.datatypes.registry DEBUG 2024-02-23 13:13:44,956 [pN:main,p:74649,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:ProBam from the datatype registry for extension probam. galaxy.datatypes.registry DEBUG 2024-02-23 13:13:44,956 [pN:main,p:74649,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:CRAM from the datatype registry for extension cram. galaxy.datatypes.registry DEBUG 2024-02-23 13:13:44,956 [pN:main,p:74649,tN:MainThread] Retrieved datatype module galaxy.datatypes.interval:Bed from the datatype registry for extension bed. galaxy.datatypes.registry DEBUG 2024-02-23 13:13:44,956 [pN:main,p:74649,tN:MainThread] Retrieved datatype module galaxy.datatypes.interval:BedGraph from the datatype registry for extension bedgraph. galaxy.datatypes.registry DEBUG 2024-02-23 13:13:44,957 [pN:main,p:74649,tN:MainThread] Retrieved datatype module galaxy.datatypes.interval:BedStrict from the datatype registry for extension bedstrict. galaxy.datatypes.registry DEBUG 2024-02-23 13:13:44,957 [pN:main,p:74649,tN:MainThread] Retrieved datatype module galaxy.datatypes.interval:Bed6 from the datatype registry for extension bed6. galaxy.datatypes.registry DEBUG 2024-02-23 13:13:44,957 [pN:main,p:74649,tN:MainThread] Retrieved datatype module galaxy.datatypes.interval:Bed12 from the datatype registry for extension bed12. galaxy.datatypes.registry DEBUG 2024-02-23 13:13:44,957 [pN:main,p:74649,tN:MainThread] Retrieved datatype module galaxy.datatypes.interval:ProBed from the datatype registry for extension probed. galaxy.datatypes.registry DEBUG 2024-02-23 13:13:44,957 [pN:main,p:74649,tN:MainThread] Retrieved datatype module galaxy.datatypes.chrominfo:ChromInfo from the datatype registry for extension len. galaxy.datatypes.registry DEBUG 2024-02-23 13:13:44,958 [pN:main,p:74649,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:DAA from the datatype registry for extension daa. galaxy.datatypes.registry DEBUG 2024-02-23 13:13:44,958 [pN:main,p:74649,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:RMA6 from the datatype registry for extension rma6. galaxy.datatypes.registry DEBUG 2024-02-23 13:13:44,958 [pN:main,p:74649,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:DMND from the datatype registry for extension dmnd. galaxy.datatypes.registry DEBUG 2024-02-23 13:13:44,958 [pN:main,p:74649,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:Parquet from the datatype registry for extension parquet. galaxy.datatypes.registry DEBUG 2024-02-23 13:13:44,958 [pN:main,p:74649,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:Idat from the datatype registry for extension idat. galaxy.datatypes.registry DEBUG 2024-02-23 13:13:44,958 [pN:main,p:74649,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:BigBed from the datatype registry for extension bigbed. galaxy.datatypes.registry DEBUG 2024-02-23 13:13:44,958 [pN:main,p:74649,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:BigWig from the datatype registry for extension bigwig. galaxy.datatypes.registry DEBUG 2024-02-23 13:13:44,958 [pN:main,p:74649,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:Binary from the datatype registry for extension cxb. galaxy.datatypes.registry DEBUG 2024-02-23 13:13:44,958 [pN:main,p:74649,tN:MainThread] Retrieved datatype module galaxy.datatypes.interval:ChromatinInteractions from the datatype registry for extension chrint. galaxy.datatypes.registry DEBUG 2024-02-23 13:13:44,958 [pN:main,p:74649,tN:MainThread] Retrieved datatype module galaxy.datatypes.tabular:CSV from the datatype registry for extension csv. galaxy.datatypes.registry DEBUG 2024-02-23 13:13:44,959 [pN:main,p:74649,tN:MainThread] Retrieved datatype module galaxy.datatypes.tabular:TSV from the datatype registry for extension tsv. galaxy.datatypes.registry DEBUG 2024-02-23 13:13:44,959 [pN:main,p:74649,tN:MainThread] Retrieved datatype module galaxy.datatypes.tabular:TSV from the datatype registry for extension intermine_tabular. galaxy.datatypes.registry DEBUG 2024-02-23 13:13:44,959 [pN:main,p:74649,tN:MainThread] Retrieved datatype module galaxy.datatypes.interval:CustomTrack from the datatype registry for extension customtrack. galaxy.datatypes.registry DEBUG 2024-02-23 13:13:44,959 [pN:main,p:74649,tN:MainThread] Retrieved datatype module galaxy.datatypes.ngsindex:BowtieColorIndex from the datatype registry for extension bowtie_color_index. galaxy.datatypes.registry DEBUG 2024-02-23 13:13:44,960 [pN:main,p:74649,tN:MainThread] Retrieved datatype module galaxy.datatypes.ngsindex:BowtieBaseIndex from the datatype registry for extension bowtie_base_index. galaxy.datatypes.registry DEBUG 2024-02-23 13:13:44,960 [pN:main,p:74649,tN:MainThread] Retrieved datatype module galaxy.datatypes.sequence:csFasta from the datatype registry for extension csfasta. galaxy.datatypes.registry DEBUG 2024-02-23 13:13:44,960 [pN:main,p:74649,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:Data from the datatype registry for extension data. galaxy.datatypes.registry DEBUG 2024-02-23 13:13:44,960 [pN:main,p:74649,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:Binary from the datatype registry for extension gz. galaxy.datatypes.registry DEBUG 2024-02-23 13:13:44,960 [pN:main,p:74649,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:Binary from the datatype registry for extension binary. galaxy.datatypes.registry DEBUG 2024-02-23 13:13:44,960 [pN:main,p:74649,tN:MainThread] Retrieved datatype module galaxy.datatypes.text:Json from the datatype registry for extension d3_hierarchy. galaxy.datatypes.registry DEBUG 2024-02-23 13:13:44,960 [pN:main,p:74649,tN:MainThread] Retrieved datatype module galaxy.datatypes.text:ImgtJson from the datatype registry for extension imgt.json. galaxy.datatypes.registry DEBUG 2024-02-23 13:13:44,960 [pN:main,p:74649,tN:MainThread] Retrieved datatype module galaxy.datatypes.text:GeoJson from the datatype registry for extension geojson. galaxy.datatypes.registry DEBUG 2024-02-23 13:13:44,960 [pN:main,p:74649,tN:MainThread] Retrieved datatype module galaxy.datatypes.text:Json from the datatype registry for extension data_manager_json. galaxy.datatypes.registry DEBUG 2024-02-23 13:13:44,961 [pN:main,p:74649,tN:MainThread] Retrieved datatype module galaxy.datatypes.sequence:DotBracket from the datatype registry for extension dbn. galaxy.datatypes.registry DEBUG 2024-02-23 13:13:44,961 [pN:main,p:74649,tN:MainThread] Retrieved datatype module galaxy.datatypes.tabular:Tabular from the datatype registry for extension fai. galaxy.datatypes.registry DEBUG 2024-02-23 13:13:44,961 [pN:main,p:74649,tN:MainThread] Retrieved datatype module galaxy.datatypes.sequence:Fasta from the datatype registry for extension fasta. galaxy.datatypes.registry DEBUG 2024-02-23 13:13:44,961 [pN:main,p:74649,tN:MainThread] Retrieved datatype module galaxy.datatypes.sequence:Fastg from the datatype registry for extension fastg. galaxy.datatypes.registry DEBUG 2024-02-23 13:13:44,961 [pN:main,p:74649,tN:MainThread] Retrieved datatype module galaxy.datatypes.sequence:Fastq from the datatype registry for extension fastq. galaxy.datatypes.registry DEBUG 2024-02-23 13:13:44,961 [pN:main,p:74649,tN:MainThread] Retrieved datatype module galaxy.datatypes.sequence:FastqSanger from the datatype registry for extension fastqsanger. galaxy.datatypes.registry DEBUG 2024-02-23 13:13:44,962 [pN:main,p:74649,tN:MainThread] Retrieved datatype module galaxy.datatypes.sequence:FastqSolexa from the datatype registry for extension fastqsolexa. galaxy.datatypes.registry DEBUG 2024-02-23 13:13:44,962 [pN:main,p:74649,tN:MainThread] Retrieved datatype module galaxy.datatypes.sequence:FastqCSSanger from the datatype registry for extension fastqcssanger. galaxy.datatypes.registry DEBUG 2024-02-23 13:13:44,962 [pN:main,p:74649,tN:MainThread] Retrieved datatype module galaxy.datatypes.sequence:FastqIllumina from the datatype registry for extension fastqillumina. galaxy.datatypes.registry DEBUG 2024-02-23 13:13:44,962 [pN:main,p:74649,tN:MainThread] Retrieved datatype module galaxy.datatypes.sequence:SequenceSplitLocations from the datatype registry for extension fqtoc. galaxy.datatypes.registry DEBUG 2024-02-23 13:13:44,962 [pN:main,p:74649,tN:MainThread] Retrieved datatype module galaxy.datatypes.tabular:Eland from the datatype registry for extension eland. galaxy.datatypes.registry DEBUG 2024-02-23 13:13:44,963 [pN:main,p:74649,tN:MainThread] Retrieved datatype module galaxy.datatypes.tabular:ElandMulti from the datatype registry for extension elandmulti. galaxy.datatypes.registry DEBUG 2024-02-23 13:13:44,963 [pN:main,p:74649,tN:MainThread] Retrieved datatype module galaxy.datatypes.tracks:GeneTrack from the datatype registry for extension genetrack. galaxy.datatypes.registry DEBUG 2024-02-23 13:13:44,963 [pN:main,p:74649,tN:MainThread] Retrieved datatype module galaxy.datatypes.interval:Gff from the datatype registry for extension gff. galaxy.datatypes.registry DEBUG 2024-02-23 13:13:44,963 [pN:main,p:74649,tN:MainThread] Retrieved datatype module galaxy.datatypes.interval:Gff3 from the datatype registry for extension gff3. galaxy.datatypes.registry DEBUG 2024-02-23 13:13:44,963 [pN:main,p:74649,tN:MainThread] Retrieved datatype module galaxy.datatypes.images:Gif from the datatype registry for extension gif. galaxy.datatypes.registry DEBUG 2024-02-23 13:13:44,963 [pN:main,p:74649,tN:MainThread] Retrieved datatype module galaxy.datatypes.images:Gmaj from the datatype registry for extension gmaj.zip. galaxy.datatypes.registry DEBUG 2024-02-23 13:13:44,963 [pN:main,p:74649,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension graph_dot. galaxy.datatypes.registry DEBUG 2024-02-23 13:13:44,964 [pN:main,p:74649,tN:MainThread] Retrieved datatype module galaxy.datatypes.interval:Gtf from the datatype registry for extension gtf. galaxy.datatypes.registry DEBUG 2024-02-23 13:13:44,964 [pN:main,p:74649,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:Binary from the datatype registry for extension toolshed.gz. galaxy.datatypes.registry DEBUG 2024-02-23 13:13:44,964 [pN:main,p:74649,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:Binary from the datatype registry for extension hdf4. galaxy.datatypes.registry DEBUG 2024-02-23 13:13:44,964 [pN:main,p:74649,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:H5 from the datatype registry for extension h5. galaxy.datatypes.registry DEBUG 2024-02-23 13:13:44,964 [pN:main,p:74649,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:H5 from the datatype registry for extension scool. galaxy.datatypes.registry DEBUG 2024-02-23 13:13:44,964 [pN:main,p:74649,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:Grib from the datatype registry for extension grib. galaxy.datatypes.registry DEBUG 2024-02-23 13:13:44,964 [pN:main,p:74649,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:Loom from the datatype registry for extension loom. galaxy.datatypes.registry DEBUG 2024-02-23 13:13:44,964 [pN:main,p:74649,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:Anndata from the datatype registry for extension h5ad. galaxy.datatypes.registry DEBUG 2024-02-23 13:13:44,964 [pN:main,p:74649,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:Visium from the datatype registry for extension visium.tar.gz. galaxy.datatypes.registry DEBUG 2024-02-23 13:13:44,965 [pN:main,p:74649,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:H5 from the datatype registry for extension mz5. galaxy.datatypes.registry DEBUG 2024-02-23 13:13:44,965 [pN:main,p:74649,tN:MainThread] Retrieved datatype module galaxy.datatypes.text:Json from the datatype registry for extension hyphy_results.json. galaxy.datatypes.registry DEBUG 2024-02-23 13:13:44,965 [pN:main,p:74649,tN:MainThread] Retrieved datatype module galaxy.datatypes.text:Json from the datatype registry for extension hivtrace. galaxy.datatypes.registry DEBUG 2024-02-23 13:13:44,965 [pN:main,p:74649,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:Cool from the datatype registry for extension cool. galaxy.datatypes.registry DEBUG 2024-02-23 13:13:44,965 [pN:main,p:74649,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:MCool from the datatype registry for extension mcool. galaxy.datatypes.registry DEBUG 2024-02-23 13:13:44,965 [pN:main,p:74649,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:H5MLM from the datatype registry for extension h5mlm. galaxy.datatypes.registry DEBUG 2024-02-23 13:13:44,965 [pN:main,p:74649,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:LudwigModel from the datatype registry for extension ludwig_model. galaxy.datatypes.registry DEBUG 2024-02-23 13:13:44,965 [pN:main,p:74649,tN:MainThread] Retrieved datatype module galaxy.datatypes.text:Html from the datatype registry for extension html. galaxy.datatypes.registry DEBUG 2024-02-23 13:13:44,965 [pN:main,p:74649,tN:MainThread] Retrieved datatype module galaxy.datatypes.text:Html from the datatype registry for extension ludwig_report.html. galaxy.datatypes.registry DEBUG 2024-02-23 13:13:44,966 [pN:main,p:74649,tN:MainThread] Retrieved datatype module galaxy.datatypes.interval:Interval from the datatype registry for extension interval. galaxy.datatypes.registry DEBUG 2024-02-23 13:13:44,966 [pN:main,p:74649,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:Binary from the datatype registry for extension jellyfish. galaxy.datatypes.registry DEBUG 2024-02-23 13:13:44,966 [pN:main,p:74649,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:Binary from the datatype registry for extension ktab. galaxy.datatypes.registry DEBUG 2024-02-23 13:13:44,966 [pN:main,p:74649,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:Binary from the datatype registry for extension hist. galaxy.datatypes.registry DEBUG 2024-02-23 13:13:44,966 [pN:main,p:74649,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:Binary from the datatype registry for extension prof. galaxy.datatypes.registry DEBUG 2024-02-23 13:13:45,048 [pN:main,p:74649,tN:MainThread] Retrieved datatype module galaxy.datatypes.isa:IsaTab from the datatype registry for extension isa-tab. galaxy.datatypes.registry DEBUG 2024-02-23 13:13:45,049 [pN:main,p:74649,tN:MainThread] Retrieved datatype module galaxy.datatypes.isa:IsaJson from the datatype registry for extension isa-json. galaxy.datatypes.registry DEBUG 2024-02-23 13:13:45,049 [pN:main,p:74649,tN:MainThread] Retrieved datatype module galaxy.datatypes.tabular:Tabular from the datatype registry for extension picard_interval_list. galaxy.datatypes.registry DEBUG 2024-02-23 13:13:45,049 [pN:main,p:74649,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension gatk_interval. galaxy.datatypes.registry DEBUG 2024-02-23 13:13:45,049 [pN:main,p:74649,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension gatk_report. galaxy.datatypes.registry DEBUG 2024-02-23 13:13:45,049 [pN:main,p:74649,tN:MainThread] Retrieved datatype module galaxy.datatypes.tabular:Tabular from the datatype registry for extension gatk_dbsnp. galaxy.datatypes.registry DEBUG 2024-02-23 13:13:45,049 [pN:main,p:74649,tN:MainThread] Retrieved datatype module galaxy.datatypes.tabular:Tabular from the datatype registry for extension gatk_tranche. galaxy.datatypes.registry DEBUG 2024-02-23 13:13:45,049 [pN:main,p:74649,tN:MainThread] Retrieved datatype module galaxy.datatypes.tabular:Tabular from the datatype registry for extension gatk_recal. galaxy.datatypes.registry DEBUG 2024-02-23 13:13:45,050 [pN:main,p:74649,tN:MainThread] Retrieved datatype module galaxy.datatypes.tabular:Tabular from the datatype registry for extension cnn. galaxy.datatypes.registry DEBUG 2024-02-23 13:13:45,050 [pN:main,p:74649,tN:MainThread] Retrieved datatype module galaxy.datatypes.tabular:Tabular from the datatype registry for extension cns. galaxy.datatypes.registry DEBUG 2024-02-23 13:13:45,050 [pN:main,p:74649,tN:MainThread] Retrieved datatype module galaxy.datatypes.tabular:Tabular from the datatype registry for extension cnr. galaxy.datatypes.registry DEBUG 2024-02-23 13:13:45,050 [pN:main,p:74649,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension hhr. galaxy.datatypes.registry DEBUG 2024-02-23 13:13:45,050 [pN:main,p:74649,tN:MainThread] Retrieved datatype module galaxy.datatypes.images:Jpg from the datatype registry for extension jpg. galaxy.datatypes.registry DEBUG 2024-02-23 13:13:45,050 [pN:main,p:74649,tN:MainThread] Retrieved datatype module galaxy.datatypes.images:Tiff from the datatype registry for extension tiff. galaxy.datatypes.registry DEBUG 2024-02-23 13:13:45,051 [pN:main,p:74649,tN:MainThread] Retrieved datatype module galaxy.datatypes.images:Tiff from the datatype registry for extension tf2. galaxy.datatypes.registry DEBUG 2024-02-23 13:13:45,051 [pN:main,p:74649,tN:MainThread] Retrieved datatype module galaxy.datatypes.images:Tiff from the datatype registry for extension tf8. galaxy.datatypes.registry DEBUG 2024-02-23 13:13:45,051 [pN:main,p:74649,tN:MainThread] Retrieved datatype module galaxy.datatypes.images:Tiff from the datatype registry for extension btf. galaxy.datatypes.registry DEBUG 2024-02-23 13:13:45,051 [pN:main,p:74649,tN:MainThread] Retrieved datatype module galaxy.datatypes.images:Tiff from the datatype registry for extension tif. galaxy.datatypes.registry DEBUG 2024-02-23 13:13:45,051 [pN:main,p:74649,tN:MainThread] Retrieved datatype module galaxy.datatypes.images:Tiff from the datatype registry for extension svs. galaxy.datatypes.registry DEBUG 2024-02-23 13:13:45,051 [pN:main,p:74649,tN:MainThread] Retrieved datatype module galaxy.datatypes.images:Tiff from the datatype registry for extension scn. galaxy.datatypes.registry DEBUG 2024-02-23 13:13:45,051 [pN:main,p:74649,tN:MainThread] Retrieved datatype module galaxy.datatypes.images:Tiff from the datatype registry for extension bif. galaxy.datatypes.registry DEBUG 2024-02-23 13:13:45,051 [pN:main,p:74649,tN:MainThread] Retrieved datatype module galaxy.datatypes.images:OMETiff from the datatype registry for extension ome.tiff. galaxy.datatypes.registry DEBUG 2024-02-23 13:13:45,051 [pN:main,p:74649,tN:MainThread] Retrieved datatype module galaxy.datatypes.images:Hamamatsu from the datatype registry for extension vms. galaxy.datatypes.registry DEBUG 2024-02-23 13:13:45,052 [pN:main,p:74649,tN:MainThread] Retrieved datatype module galaxy.datatypes.images:Hamamatsu from the datatype registry for extension vmu. galaxy.datatypes.registry DEBUG 2024-02-23 13:13:45,052 [pN:main,p:74649,tN:MainThread] Retrieved datatype module galaxy.datatypes.images:Hamamatsu from the datatype registry for extension ndpi. galaxy.datatypes.registry DEBUG 2024-02-23 13:13:45,052 [pN:main,p:74649,tN:MainThread] Retrieved datatype module galaxy.datatypes.images:Mirax from the datatype registry for extension mrxs. galaxy.datatypes.registry DEBUG 2024-02-23 13:13:45,052 [pN:main,p:74649,tN:MainThread] Retrieved datatype module galaxy.datatypes.images:Sakura from the datatype registry for extension svslide. galaxy.datatypes.registry DEBUG 2024-02-23 13:13:45,052 [pN:main,p:74649,tN:MainThread] Retrieved datatype module galaxy.datatypes.images:Bmp from the datatype registry for extension bmp. galaxy.datatypes.registry DEBUG 2024-02-23 13:13:45,052 [pN:main,p:74649,tN:MainThread] Retrieved datatype module galaxy.datatypes.images:Im from the datatype registry for extension im. galaxy.datatypes.registry DEBUG 2024-02-23 13:13:45,052 [pN:main,p:74649,tN:MainThread] Retrieved datatype module galaxy.datatypes.images:Pcd from the datatype registry for extension pcd. galaxy.datatypes.registry DEBUG 2024-02-23 13:13:45,052 [pN:main,p:74649,tN:MainThread] Retrieved datatype module galaxy.datatypes.images:Pcx from the datatype registry for extension pcx. galaxy.datatypes.registry DEBUG 2024-02-23 13:13:45,052 [pN:main,p:74649,tN:MainThread] Retrieved datatype module galaxy.datatypes.images:Ppm from the datatype registry for extension ppm. galaxy.datatypes.registry DEBUG 2024-02-23 13:13:45,052 [pN:main,p:74649,tN:MainThread] Retrieved datatype module galaxy.datatypes.images:Psd from the datatype registry for extension psd. galaxy.datatypes.registry DEBUG 2024-02-23 13:13:45,053 [pN:main,p:74649,tN:MainThread] Retrieved datatype module galaxy.datatypes.images:Xbm from the datatype registry for extension xbm. galaxy.datatypes.registry DEBUG 2024-02-23 13:13:45,053 [pN:main,p:74649,tN:MainThread] Retrieved datatype module galaxy.datatypes.images:Xpm from the datatype registry for extension xpm. galaxy.datatypes.registry DEBUG 2024-02-23 13:13:45,053 [pN:main,p:74649,tN:MainThread] Retrieved datatype module galaxy.datatypes.images:Rgb from the datatype registry for extension rgb. galaxy.datatypes.registry DEBUG 2024-02-23 13:13:45,053 [pN:main,p:74649,tN:MainThread] Retrieved datatype module galaxy.datatypes.images:Pbm from the datatype registry for extension pbm. galaxy.datatypes.registry DEBUG 2024-02-23 13:13:45,053 [pN:main,p:74649,tN:MainThread] Retrieved datatype module galaxy.datatypes.images:Pgm from the datatype registry for extension pgm. galaxy.datatypes.registry DEBUG 2024-02-23 13:13:45,053 [pN:main,p:74649,tN:MainThread] Retrieved datatype module galaxy.datatypes.images:Nrrd from the datatype registry for extension nrrd. galaxy.datatypes.registry DEBUG 2024-02-23 13:13:45,053 [pN:main,p:74649,tN:MainThread] Retrieved datatype module galaxy.datatypes.images:Nrrd from the datatype registry for extension nhdr. galaxy.datatypes.registry DEBUG 2024-02-23 13:13:45,053 [pN:main,p:74649,tN:MainThread] Retrieved datatype module galaxy.datatypes.sequence:RNADotPlotMatrix from the datatype registry for extension rna_eps. galaxy.datatypes.registry DEBUG 2024-02-23 13:13:45,054 [pN:main,p:74649,tN:MainThread] Retrieved datatype module galaxy.datatypes.qiime2:QIIME2Artifact from the datatype registry for extension qza. galaxy.datatypes.registry DEBUG 2024-02-23 13:13:45,054 [pN:main,p:74649,tN:MainThread] Retrieved datatype module galaxy.datatypes.qiime2:QIIME2Visualization from the datatype registry for extension qzv. galaxy.datatypes.registry DEBUG 2024-02-23 13:13:45,054 [pN:main,p:74649,tN:MainThread] Retrieved datatype module galaxy.datatypes.qiime2:QIIME2Metadata from the datatype registry for extension qiime2.tabular. galaxy.datatypes.registry DEBUG 2024-02-23 13:13:45,054 [pN:main,p:74649,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:CompressedZipArchive from the datatype registry for extension zip. galaxy.datatypes.registry DEBUG 2024-02-23 13:13:45,055 [pN:main,p:74649,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:CompressedZipArchive from the datatype registry for extension ncbi_genome_dataset.zip. galaxy.datatypes.registry DEBUG 2024-02-23 13:13:45,055 [pN:main,p:74649,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:CompressedArchive from the datatype registry for extension tar. galaxy.datatypes.registry DEBUG 2024-02-23 13:13:45,055 [pN:main,p:74649,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:Directory from the datatype registry for extension directory. galaxy.datatypes.registry DEBUG 2024-02-23 13:13:45,055 [pN:main,p:74649,tN:MainThread] Retrieved datatype module galaxy.datatypes.text:Yaml from the datatype registry for extension yaml. galaxy.datatypes.registry DEBUG 2024-02-23 13:13:45,055 [pN:main,p:74649,tN:MainThread] Retrieved datatype module galaxy.datatypes.tabular:Tabular from the datatype registry for extension mrm. galaxy.datatypes.registry DEBUG 2024-02-23 13:13:45,057 [pN:main,p:74649,tN:MainThread] Retrieved datatype module galaxy.datatypes.proteomics:Dta from the datatype registry for extension dta. galaxy.datatypes.registry DEBUG 2024-02-23 13:13:45,057 [pN:main,p:74649,tN:MainThread] Retrieved datatype module galaxy.datatypes.proteomics:Dta2d from the datatype registry for extension dta2d. galaxy.datatypes.registry DEBUG 2024-02-23 13:13:45,058 [pN:main,p:74649,tN:MainThread] Retrieved datatype module galaxy.datatypes.proteomics:Edta from the datatype registry for extension edta. galaxy.datatypes.registry DEBUG 2024-02-23 13:13:45,058 [pN:main,p:74649,tN:MainThread] Retrieved datatype module galaxy.datatypes.proteomics:PepXml from the datatype registry for extension pepxml. galaxy.datatypes.registry DEBUG 2024-02-23 13:13:45,058 [pN:main,p:74649,tN:MainThread] Retrieved datatype module galaxy.datatypes.proteomics:PepXml from the datatype registry for extension raw_pepxml. galaxy.datatypes.registry DEBUG 2024-02-23 13:13:45,058 [pN:main,p:74649,tN:MainThread] Retrieved datatype module galaxy.datatypes.proteomics:PepXml from the datatype registry for extension peptideprophet_pepxml. galaxy.datatypes.registry DEBUG 2024-02-23 13:13:45,058 [pN:main,p:74649,tN:MainThread] Retrieved datatype module galaxy.datatypes.proteomics:PepXml from the datatype registry for extension interprophet_pepxml. galaxy.datatypes.registry DEBUG 2024-02-23 13:13:45,058 [pN:main,p:74649,tN:MainThread] Retrieved datatype module galaxy.datatypes.proteomics:ProtXML from the datatype registry for extension protxml. galaxy.datatypes.registry DEBUG 2024-02-23 13:13:45,058 [pN:main,p:74649,tN:MainThread] Retrieved datatype module galaxy.datatypes.proteomics:ParamXml from the datatype registry for extension paramxml. galaxy.datatypes.registry DEBUG 2024-02-23 13:13:45,058 [pN:main,p:74649,tN:MainThread] Retrieved datatype module galaxy.datatypes.proteomics:Kroenik from the datatype registry for extension kroenik. galaxy.datatypes.registry DEBUG 2024-02-23 13:13:45,058 [pN:main,p:74649,tN:MainThread] Retrieved datatype module galaxy.datatypes.proteomics:PepList from the datatype registry for extension peplist. galaxy.datatypes.registry DEBUG 2024-02-23 13:13:45,059 [pN:main,p:74649,tN:MainThread] Retrieved datatype module galaxy.datatypes.proteomics:PSMS from the datatype registry for extension psms. galaxy.datatypes.registry DEBUG 2024-02-23 13:13:45,059 [pN:main,p:74649,tN:MainThread] Retrieved datatype module galaxy.datatypes.proteomics:PepXmlReport from the datatype registry for extension pepxml.tsv. galaxy.datatypes.registry DEBUG 2024-02-23 13:13:45,059 [pN:main,p:74649,tN:MainThread] Retrieved datatype module galaxy.datatypes.proteomics:ProtXmlReport from the datatype registry for extension protxml.tsv. galaxy.datatypes.registry DEBUG 2024-02-23 13:13:45,059 [pN:main,p:74649,tN:MainThread] Retrieved datatype module galaxy.datatypes.proteomics:MascotDat from the datatype registry for extension mascotdat. galaxy.datatypes.registry DEBUG 2024-02-23 13:13:45,059 [pN:main,p:74649,tN:MainThread] Retrieved datatype module galaxy.datatypes.proteomics:MzIdentML from the datatype registry for extension mzid. galaxy.datatypes.registry DEBUG 2024-02-23 13:13:45,059 [pN:main,p:74649,tN:MainThread] Retrieved datatype module galaxy.datatypes.proteomics:IdXML from the datatype registry for extension idxml. galaxy.datatypes.registry DEBUG 2024-02-23 13:13:45,059 [pN:main,p:74649,tN:MainThread] Retrieved datatype module galaxy.datatypes.proteomics:TandemXML from the datatype registry for extension tandem. galaxy.datatypes.registry DEBUG 2024-02-23 13:13:45,059 [pN:main,p:74649,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension sirius.ms. galaxy.datatypes.registry DEBUG 2024-02-23 13:13:45,059 [pN:main,p:74649,tN:MainThread] Retrieved datatype module galaxy.datatypes.proteomics:ThermoRAW from the datatype registry for extension thermo.raw. galaxy.datatypes.registry DEBUG 2024-02-23 13:13:45,059 [pN:main,p:74649,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:BafTar from the datatype registry for extension brukerbaf.d.tar. galaxy.datatypes.registry DEBUG 2024-02-23 13:13:45,060 [pN:main,p:74649,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:YepTar from the datatype registry for extension agilentbrukeryep.d.tar. galaxy.datatypes.registry DEBUG 2024-02-23 13:13:45,060 [pN:main,p:74649,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:TdfTar from the datatype registry for extension brukertdf.d.tar. galaxy.datatypes.registry DEBUG 2024-02-23 13:13:45,060 [pN:main,p:74649,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:MassHunterTar from the datatype registry for extension agilentmasshunter.d.tar. galaxy.datatypes.registry DEBUG 2024-02-23 13:13:45,060 [pN:main,p:74649,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:MassLynxTar from the datatype registry for extension watersmasslynx.raw.tar. galaxy.datatypes.registry DEBUG 2024-02-23 13:13:45,060 [pN:main,p:74649,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:WiffTar from the datatype registry for extension wiff.tar. galaxy.datatypes.registry DEBUG 2024-02-23 13:13:45,060 [pN:main,p:74649,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:Wiff2Tar from the datatype registry for extension wiff2.tar. galaxy.datatypes.registry DEBUG 2024-02-23 13:13:45,060 [pN:main,p:74649,tN:MainThread] Retrieved datatype module galaxy.datatypes.proteomics:MascotXML from the datatype registry for extension mascotxml. galaxy.datatypes.registry DEBUG 2024-02-23 13:13:45,060 [pN:main,p:74649,tN:MainThread] Retrieved datatype module galaxy.datatypes.proteomics:MzTab from the datatype registry for extension mztab. galaxy.datatypes.registry DEBUG 2024-02-23 13:13:45,060 [pN:main,p:74649,tN:MainThread] Retrieved datatype module galaxy.datatypes.proteomics:MzTab2 from the datatype registry for extension mztab2. galaxy.datatypes.registry DEBUG 2024-02-23 13:13:45,060 [pN:main,p:74649,tN:MainThread] Retrieved datatype module galaxy.datatypes.proteomics:MzML from the datatype registry for extension mzml. galaxy.datatypes.registry DEBUG 2024-02-23 13:13:45,060 [pN:main,p:74649,tN:MainThread] Retrieved datatype module galaxy.datatypes.proteomics:NmrML from the datatype registry for extension nmrml. galaxy.datatypes.registry DEBUG 2024-02-23 13:13:45,061 [pN:main,p:74649,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:Meryldb from the datatype registry for extension meryldb. galaxy.datatypes.registry DEBUG 2024-02-23 13:13:45,061 [pN:main,p:74649,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:Bref3 from the datatype registry for extension bref3. galaxy.datatypes.registry DEBUG 2024-02-23 13:13:45,061 [pN:main,p:74649,tN:MainThread] Retrieved datatype module galaxy.datatypes.proteomics:Mgf from the datatype registry for extension mgf. galaxy.datatypes.registry DEBUG 2024-02-23 13:13:45,061 [pN:main,p:74649,tN:MainThread] Retrieved datatype module galaxy.datatypes.proteomics:Wiff from the datatype registry for extension wiff. galaxy.datatypes.registry DEBUG 2024-02-23 13:13:45,061 [pN:main,p:74649,tN:MainThread] Retrieved datatype module galaxy.datatypes.proteomics:Wiff2 from the datatype registry for extension wiff2. galaxy.datatypes.registry DEBUG 2024-02-23 13:13:45,061 [pN:main,p:74649,tN:MainThread] Retrieved datatype module galaxy.datatypes.proteomics:MzXML from the datatype registry for extension mzxml. galaxy.datatypes.registry DEBUG 2024-02-23 13:13:45,061 [pN:main,p:74649,tN:MainThread] Retrieved datatype module galaxy.datatypes.proteomics:MzData from the datatype registry for extension mzdata. galaxy.datatypes.registry DEBUG 2024-02-23 13:13:45,061 [pN:main,p:74649,tN:MainThread] Retrieved datatype module galaxy.datatypes.proteomics:Ms2 from the datatype registry for extension ms2. galaxy.datatypes.registry DEBUG 2024-02-23 13:13:45,061 [pN:main,p:74649,tN:MainThread] Retrieved datatype module galaxy.datatypes.proteomics:MzQuantML from the datatype registry for extension mzq. galaxy.datatypes.registry DEBUG 2024-02-23 13:13:45,062 [pN:main,p:74649,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:SQlite from the datatype registry for extension sqlite. galaxy.datatypes.registry DEBUG 2024-02-23 13:13:45,062 [pN:main,p:74649,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:MzSQlite from the datatype registry for extension mz.sqlite. galaxy.datatypes.registry DEBUG 2024-02-23 13:13:45,062 [pN:main,p:74649,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:OSW from the datatype registry for extension osw. galaxy.datatypes.registry DEBUG 2024-02-23 13:13:45,062 [pN:main,p:74649,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:PQP from the datatype registry for extension pqp. galaxy.datatypes.registry DEBUG 2024-02-23 13:13:45,062 [pN:main,p:74649,tN:MainThread] Retrieved datatype module galaxy.datatypes.proteomics:TraML from the datatype registry for extension traml. galaxy.datatypes.registry DEBUG 2024-02-23 13:13:45,062 [pN:main,p:74649,tN:MainThread] Retrieved datatype module galaxy.datatypes.proteomics:TrafoXML from the datatype registry for extension trafoxml. galaxy.datatypes.registry DEBUG 2024-02-23 13:13:45,062 [pN:main,p:74649,tN:MainThread] Retrieved datatype module galaxy.datatypes.proteomics:FeatureXML from the datatype registry for extension featurexml. galaxy.datatypes.registry DEBUG 2024-02-23 13:13:45,062 [pN:main,p:74649,tN:MainThread] Retrieved datatype module galaxy.datatypes.proteomics:ConsensusXML from the datatype registry for extension consensusxml. galaxy.datatypes.registry DEBUG 2024-02-23 13:13:45,062 [pN:main,p:74649,tN:MainThread] Retrieved datatype module galaxy.datatypes.proteomics:UniProtXML from the datatype registry for extension uniprotxml. galaxy.datatypes.registry DEBUG 2024-02-23 13:13:45,062 [pN:main,p:74649,tN:MainThread] Retrieved datatype module galaxy.datatypes.proteomics:XquestXML from the datatype registry for extension xquest.xml. galaxy.datatypes.registry DEBUG 2024-02-23 13:13:45,063 [pN:main,p:74649,tN:MainThread] Retrieved datatype module galaxy.datatypes.proteomics:XquestSpecXML from the datatype registry for extension spec.xml. galaxy.datatypes.registry DEBUG 2024-02-23 13:13:45,063 [pN:main,p:74649,tN:MainThread] Retrieved datatype module galaxy.datatypes.proteomics:QCML from the datatype registry for extension qcml. galaxy.datatypes.registry DEBUG 2024-02-23 13:13:45,063 [pN:main,p:74649,tN:MainThread] Retrieved datatype module galaxy.datatypes.text:Json from the datatype registry for extension mzqc. galaxy.datatypes.registry DEBUG 2024-02-23 13:13:45,063 [pN:main,p:74649,tN:MainThread] Retrieved datatype module galaxy.datatypes.proteomics:Msp from the datatype registry for extension msp. galaxy.datatypes.registry DEBUG 2024-02-23 13:13:45,063 [pN:main,p:74649,tN:MainThread] Retrieved datatype module galaxy.datatypes.proteomics:SPLibNoIndex from the datatype registry for extension splib_noindex. galaxy.datatypes.registry DEBUG 2024-02-23 13:13:45,063 [pN:main,p:74649,tN:MainThread] Retrieved datatype module galaxy.datatypes.proteomics:SPLib from the datatype registry for extension splib. galaxy.datatypes.registry DEBUG 2024-02-23 13:13:45,063 [pN:main,p:74649,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:BlibSQlite from the datatype registry for extension blib. galaxy.datatypes.registry DEBUG 2024-02-23 13:13:45,063 [pN:main,p:74649,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:DlibSQlite from the datatype registry for extension dlib. galaxy.datatypes.registry DEBUG 2024-02-23 13:13:45,063 [pN:main,p:74649,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:ElibSQlite from the datatype registry for extension elib. galaxy.datatypes.registry DEBUG 2024-02-23 13:13:45,063 [pN:main,p:74649,tN:MainThread] Retrieved datatype module galaxy.datatypes.proteomics:XHunterAslFormat from the datatype registry for extension hlf. galaxy.datatypes.registry DEBUG 2024-02-23 13:13:45,064 [pN:main,p:74649,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:IdpDB from the datatype registry for extension idpdb. galaxy.datatypes.registry DEBUG 2024-02-23 13:13:45,064 [pN:main,p:74649,tN:MainThread] Retrieved datatype module galaxy.datatypes.proteomics:Sf3 from the datatype registry for extension sf3. galaxy.datatypes.registry DEBUG 2024-02-23 13:13:45,064 [pN:main,p:74649,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:Binary from the datatype registry for extension cps. galaxy.datatypes.registry DEBUG 2024-02-23 13:13:45,064 [pN:main,p:74649,tN:MainThread] Retrieved datatype module galaxy.datatypes.tabular:ConnectivityTable from the datatype registry for extension ct. galaxy.datatypes.registry DEBUG 2024-02-23 13:13:45,064 [pN:main,p:74649,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:PostgresqlArchive from the datatype registry for extension postgresql. galaxy.datatypes.registry DEBUG 2024-02-23 13:13:45,064 [pN:main,p:74649,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:MongoDBArchive from the datatype registry for extension mongodb. galaxy.datatypes.registry DEBUG 2024-02-23 13:13:45,064 [pN:main,p:74649,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:GeneNoteBook from the datatype registry for extension genenotebook. galaxy.datatypes.registry DEBUG 2024-02-23 13:13:45,064 [pN:main,p:74649,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:SearchGuiArchive from the datatype registry for extension searchgui_archive. galaxy.datatypes.registry DEBUG 2024-02-23 13:13:45,064 [pN:main,p:74649,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:Fast5Archive from the datatype registry for extension fast5.tar. galaxy.datatypes.registry DEBUG 2024-02-23 13:13:45,064 [pN:main,p:74649,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:Fast5ArchiveGz from the datatype registry for extension fast5.tar.gz. galaxy.datatypes.registry DEBUG 2024-02-23 13:13:45,065 [pN:main,p:74649,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:Fast5ArchiveBz2 from the datatype registry for extension fast5.tar.bz2. galaxy.datatypes.registry DEBUG 2024-02-23 13:13:45,065 [pN:main,p:74649,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:CompressedArchive from the datatype registry for extension peptideshaker_archive. galaxy.datatypes.registry DEBUG 2024-02-23 13:13:45,065 [pN:main,p:74649,tN:MainThread] Retrieved datatype module galaxy.datatypes.tabular:Tabular from the datatype registry for extension percin. galaxy.datatypes.registry DEBUG 2024-02-23 13:13:45,065 [pN:main,p:74649,tN:MainThread] Retrieved datatype module galaxy.datatypes.xml:GenericXml from the datatype registry for extension percout. galaxy.datatypes.registry DEBUG 2024-02-23 13:13:45,065 [pN:main,p:74649,tN:MainThread] Retrieved datatype module galaxy.datatypes.tabular:Tabular from the datatype registry for extension hardklor. galaxy.datatypes.registry DEBUG 2024-02-23 13:13:45,065 [pN:main,p:74649,tN:MainThread] Retrieved datatype module galaxy.datatypes.tabular:Tabular from the datatype registry for extension kronik. galaxy.datatypes.registry DEBUG 2024-02-23 13:13:45,065 [pN:main,p:74649,tN:MainThread] Retrieved datatype module galaxy.datatypes.proteomics:ImzML from the datatype registry for extension imzml. galaxy.datatypes.registry DEBUG 2024-02-23 13:13:45,065 [pN:main,p:74649,tN:MainThread] Retrieved datatype module galaxy.datatypes.images:Analyze75 from the datatype registry for extension analyze75. galaxy.datatypes.registry DEBUG 2024-02-23 13:13:45,066 [pN:main,p:74649,tN:MainThread] Retrieved datatype module galaxy.datatypes.images:Nifti1 from the datatype registry for extension nii1. galaxy.datatypes.registry DEBUG 2024-02-23 13:13:45,066 [pN:main,p:74649,tN:MainThread] Retrieved datatype module galaxy.datatypes.images:Nifti2 from the datatype registry for extension nii2. galaxy.datatypes.registry DEBUG 2024-02-23 13:13:45,066 [pN:main,p:74649,tN:MainThread] Retrieved datatype module galaxy.datatypes.images:Gifti from the datatype registry for extension gii. galaxy.datatypes.registry DEBUG 2024-02-23 13:13:45,066 [pN:main,p:74649,tN:MainThread] Retrieved datatype module galaxy.datatypes.images:Tck from the datatype registry for extension tck. galaxy.datatypes.registry DEBUG 2024-02-23 13:13:45,066 [pN:main,p:74649,tN:MainThread] Retrieved datatype module galaxy.datatypes.images:Trk from the datatype registry for extension trk. galaxy.datatypes.registry DEBUG 2024-02-23 13:13:45,066 [pN:main,p:74649,tN:MainThread] Retrieved datatype module galaxy.datatypes.images:Mrc2014 from the datatype registry for extension mrc. galaxy.datatypes.registry DEBUG 2024-02-23 13:13:45,066 [pN:main,p:74649,tN:MainThread] Retrieved datatype module galaxy.datatypes.images:Star from the datatype registry for extension star. galaxy.datatypes.registry DEBUG 2024-02-23 13:13:45,066 [pN:main,p:74649,tN:MainThread] Retrieved datatype module galaxy.datatypes.proteomics:PEFF from the datatype registry for extension peff. galaxy.datatypes.registry DEBUG 2024-02-23 13:13:45,067 [pN:main,p:74649,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension toml. galaxy.datatypes.registry DEBUG 2024-02-23 13:13:45,067 [pN:main,p:74649,tN:MainThread] Retrieved datatype module galaxy.datatypes.flow:FCS from the datatype registry for extension fcs. galaxy.datatypes.registry DEBUG 2024-02-23 13:13:45,067 [pN:main,p:74649,tN:MainThread] Retrieved datatype module galaxy.datatypes.tabular:Tabular from the datatype registry for extension flowtext. galaxy.datatypes.registry DEBUG 2024-02-23 13:13:45,067 [pN:main,p:74649,tN:MainThread] Retrieved datatype module galaxy.datatypes.tabular:Tabular from the datatype registry for extension flowclr. galaxy.datatypes.registry DEBUG 2024-02-23 13:13:45,067 [pN:main,p:74649,tN:MainThread] Retrieved datatype module galaxy.datatypes.tabular:Tabular from the datatype registry for extension flowmfi. galaxy.datatypes.registry DEBUG 2024-02-23 13:13:45,068 [pN:main,p:74649,tN:MainThread] Retrieved datatype module galaxy.datatypes.tabular:Tabular from the datatype registry for extension flowstat1. galaxy.datatypes.registry DEBUG 2024-02-23 13:13:45,068 [pN:main,p:74649,tN:MainThread] Retrieved datatype module galaxy.datatypes.tabular:Tabular from the datatype registry for extension flowstat2. galaxy.datatypes.registry DEBUG 2024-02-23 13:13:45,068 [pN:main,p:74649,tN:MainThread] Retrieved datatype module galaxy.datatypes.tabular:Tabular from the datatype registry for extension flowstat3. galaxy.datatypes.registry DEBUG 2024-02-23 13:13:45,068 [pN:main,p:74649,tN:MainThread] Retrieved datatype module galaxy.datatypes.tabular:Tabular from the datatype registry for extension flowscore. galaxy.datatypes.registry DEBUG 2024-02-23 13:13:45,068 [pN:main,p:74649,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:RData from the datatype registry for extension flowframe. galaxy.datatypes.registry DEBUG 2024-02-23 13:13:45,068 [pN:main,p:74649,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:RData from the datatype registry for extension fsom. galaxy.datatypes.registry DEBUG 2024-02-23 13:13:45,068 [pN:main,p:74649,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:RData from the datatype registry for extension flowset. galaxy.datatypes.registry DEBUG 2024-02-23 13:13:45,069 [pN:main,p:74649,tN:MainThread] Retrieved datatype module galaxy.datatypes.tabular:Tabular from the datatype registry for extension metacyto_clr.txt. galaxy.datatypes.registry DEBUG 2024-02-23 13:13:45,069 [pN:main,p:74649,tN:MainThread] Retrieved datatype module galaxy.datatypes.metacyto:mSummary from the datatype registry for extension metacyto_summary.txt. galaxy.datatypes.registry DEBUG 2024-02-23 13:13:45,069 [pN:main,p:74649,tN:MainThread] Retrieved datatype module galaxy.datatypes.metacyto:mStats from the datatype registry for extension metacyto_stats.txt. galaxy.datatypes.registry DEBUG 2024-02-23 13:13:45,069 [pN:main,p:74649,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:CompressedArchive from the datatype registry for extension deeptools_compute_matrix_archive. galaxy.datatypes.registry DEBUG 2024-02-23 13:13:45,069 [pN:main,p:74649,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:CompressedArchive from the datatype registry for extension deeptools_coverage_matrix. galaxy.datatypes.registry DEBUG 2024-02-23 13:13:45,070 [pN:main,p:74649,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:NetCDF from the datatype registry for extension netcdf. galaxy.datatypes.registry DEBUG 2024-02-23 13:13:45,070 [pN:main,p:74649,tN:MainThread] Retrieved datatype module galaxy.datatypes.images:Eps from the datatype registry for extension eps. galaxy.datatypes.registry DEBUG 2024-02-23 13:13:45,070 [pN:main,p:74649,tN:MainThread] Retrieved datatype module galaxy.datatypes.images:Rast from the datatype registry for extension rast. galaxy.datatypes.registry DEBUG 2024-02-23 13:13:45,070 [pN:main,p:74649,tN:MainThread] Retrieved datatype module galaxy.datatypes.images:Laj from the datatype registry for extension laj. galaxy.datatypes.registry DEBUG 2024-02-23 13:13:45,070 [pN:main,p:74649,tN:MainThread] Retrieved datatype module galaxy.datatypes.sequence:Lav from the datatype registry for extension lav. galaxy.datatypes.registry DEBUG 2024-02-23 13:13:45,070 [pN:main,p:74649,tN:MainThread] Retrieved datatype module galaxy.datatypes.sequence:Maf from the datatype registry for extension maf. galaxy.datatypes.registry DEBUG 2024-02-23 13:13:45,070 [pN:main,p:74649,tN:MainThread] Retrieved datatype module galaxy.datatypes.sequence:MafCustomTrack from the datatype registry for extension mafcustomtrack. galaxy.datatypes.registry DEBUG 2024-02-23 13:13:45,070 [pN:main,p:74649,tN:MainThread] Retrieved datatype module galaxy.datatypes.tabular:MatrixMarket from the datatype registry for extension mtx. galaxy.datatypes.registry DEBUG 2024-02-23 13:13:45,070 [pN:main,p:74649,tN:MainThread] Retrieved datatype module galaxy.datatypes.tabular:CMAP from the datatype registry for extension cmap. galaxy.datatypes.registry DEBUG 2024-02-23 13:13:45,070 [pN:main,p:74649,tN:MainThread] Retrieved datatype module galaxy.datatypes.interval:ENCODEPeak from the datatype registry for extension encodepeak. galaxy.datatypes.registry DEBUG 2024-02-23 13:13:45,071 [pN:main,p:74649,tN:MainThread] Retrieved datatype module galaxy.datatypes.images:Pdf from the datatype registry for extension pdf. galaxy.datatypes.registry DEBUG 2024-02-23 13:13:45,071 [pN:main,p:74649,tN:MainThread] Retrieved datatype module galaxy.datatypes.tabular:Pileup from the datatype registry for extension pileup. galaxy.datatypes.registry DEBUG 2024-02-23 13:13:45,071 [pN:main,p:74649,tN:MainThread] Retrieved datatype module galaxy.datatypes.tabular:Psl from the datatype registry for extension psl. galaxy.datatypes.registry DEBUG 2024-02-23 13:13:45,071 [pN:main,p:74649,tN:MainThread] Retrieved datatype module galaxy.datatypes.text:Obo from the datatype registry for extension obo. galaxy.datatypes.registry DEBUG 2024-02-23 13:13:45,071 [pN:main,p:74649,tN:MainThread] Retrieved datatype module galaxy.datatypes.xml:Owl from the datatype registry for extension owl. galaxy.datatypes.registry DEBUG 2024-02-23 13:13:45,071 [pN:main,p:74649,tN:MainThread] Retrieved datatype module galaxy.datatypes.images:Png from the datatype registry for extension png. galaxy.datatypes.registry DEBUG 2024-02-23 13:13:45,071 [pN:main,p:74649,tN:MainThread] Retrieved datatype module galaxy.datatypes.qualityscore:QualityScore from the datatype registry for extension qual. galaxy.datatypes.registry DEBUG 2024-02-23 13:13:45,071 [pN:main,p:74649,tN:MainThread] Retrieved datatype module galaxy.datatypes.qualityscore:QualityScoreSolexa from the datatype registry for extension qualsolexa. galaxy.datatypes.registry DEBUG 2024-02-23 13:13:45,071 [pN:main,p:74649,tN:MainThread] Retrieved datatype module galaxy.datatypes.qualityscore:QualityScoreIllumina from the datatype registry for extension qualillumina. galaxy.datatypes.registry DEBUG 2024-02-23 13:13:45,071 [pN:main,p:74649,tN:MainThread] Retrieved datatype module galaxy.datatypes.qualityscore:QualityScoreSOLiD from the datatype registry for extension qualsolid. galaxy.datatypes.registry DEBUG 2024-02-23 13:13:45,072 [pN:main,p:74649,tN:MainThread] Retrieved datatype module galaxy.datatypes.qualityscore:QualityScore454 from the datatype registry for extension qual454. galaxy.datatypes.registry DEBUG 2024-02-23 13:13:45,072 [pN:main,p:74649,tN:MainThread] Retrieved datatype module galaxy.datatypes.assembly:Roadmaps from the datatype registry for extension roadmaps. galaxy.datatypes.registry DEBUG 2024-02-23 13:13:45,072 [pN:main,p:74649,tN:MainThread] Retrieved datatype module galaxy.datatypes.tabular:Sam from the datatype registry for extension sam. galaxy.datatypes.registry DEBUG 2024-02-23 13:13:45,072 [pN:main,p:74649,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:Scf from the datatype registry for extension scf. galaxy.datatypes.registry DEBUG 2024-02-23 13:13:45,072 [pN:main,p:74649,tN:MainThread] Retrieved datatype module galaxy.datatypes.assembly:Sequences from the datatype registry for extension sequences. galaxy.datatypes.registry DEBUG 2024-02-23 13:13:45,072 [pN:main,p:74649,tN:MainThread] Retrieved datatype module galaxy.datatypes.text:SnpEffDb from the datatype registry for extension snpeffdb. galaxy.datatypes.registry DEBUG 2024-02-23 13:13:45,072 [pN:main,p:74649,tN:MainThread] Retrieved datatype module galaxy.datatypes.text:SnpSiftDbNSFP from the datatype registry for extension snpsiftdbnsfp. galaxy.datatypes.registry DEBUG 2024-02-23 13:13:45,072 [pN:main,p:74649,tN:MainThread] Retrieved datatype module galaxy.datatypes.tabular:Tabular from the datatype registry for extension dbnsfp.tabular. galaxy.datatypes.registry DEBUG 2024-02-23 13:13:45,072 [pN:main,p:74649,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:Sff from the datatype registry for extension sff. galaxy.datatypes.registry DEBUG 2024-02-23 13:13:45,073 [pN:main,p:74649,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:Sra from the datatype registry for extension sra. galaxy.datatypes.registry DEBUG 2024-02-23 13:13:45,073 [pN:main,p:74649,tN:MainThread] Retrieved datatype module galaxy.datatypes.tabular:SraManifest from the datatype registry for extension sra_manifest.tabular. galaxy.datatypes.registry DEBUG 2024-02-23 13:13:45,073 [pN:main,p:74649,tN:MainThread] Retrieved datatype module galaxy.datatypes.xml:GenericXml from the datatype registry for extension svg. galaxy.datatypes.registry DEBUG 2024-02-23 13:13:45,073 [pN:main,p:74649,tN:MainThread] Retrieved datatype module galaxy.datatypes.tabular:Taxonomy from the datatype registry for extension taxonomy. galaxy.datatypes.registry DEBUG 2024-02-23 13:13:45,073 [pN:main,p:74649,tN:MainThread] Retrieved datatype module galaxy.datatypes.tabular:Tabular from the datatype registry for extension tabular. galaxy.datatypes.registry DEBUG 2024-02-23 13:13:45,073 [pN:main,p:74649,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:TwoBit from the datatype registry for extension twobit. galaxy.datatypes.registry DEBUG 2024-02-23 13:13:45,073 [pN:main,p:74649,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:SQmass from the datatype registry for extension sqmass. galaxy.datatypes.registry DEBUG 2024-02-23 13:13:45,073 [pN:main,p:74649,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:GeminiSQLite from the datatype registry for extension gemini.sqlite. galaxy.datatypes.registry DEBUG 2024-02-23 13:13:45,073 [pN:main,p:74649,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:ChiraSQLite from the datatype registry for extension chira.sqlite. galaxy.datatypes.registry DEBUG 2024-02-23 13:13:45,074 [pN:main,p:74649,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:CuffDiffSQlite from the datatype registry for extension cuffdiff.sqlite. galaxy.datatypes.registry DEBUG 2024-02-23 13:13:45,074 [pN:main,p:74649,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:GAFASQLite from the datatype registry for extension gafa.sqlite. galaxy.datatypes.registry DEBUG 2024-02-23 13:13:45,074 [pN:main,p:74649,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:NcbiTaxonomySQlite from the datatype registry for extension ncbitaxonomy.sqlite. galaxy.datatypes.registry DEBUG 2024-02-23 13:13:45,074 [pN:main,p:74649,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension txt. galaxy.datatypes.registry DEBUG 2024-02-23 13:13:45,074 [pN:main,p:74649,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:LineCount from the datatype registry for extension linecount. galaxy.datatypes.registry DEBUG 2024-02-23 13:13:45,074 [pN:main,p:74649,tN:MainThread] Retrieved datatype module galaxy.datatypes.sequence:MemePsp from the datatype registry for extension memepsp. galaxy.datatypes.registry DEBUG 2024-02-23 13:13:45,074 [pN:main,p:74649,tN:MainThread] Retrieved datatype module galaxy.datatypes.xml:MEMEXml from the datatype registry for extension memexml. galaxy.datatypes.registry DEBUG 2024-02-23 13:13:45,074 [pN:main,p:74649,tN:MainThread] Retrieved datatype module galaxy.datatypes.xml:CisML from the datatype registry for extension cisml. galaxy.datatypes.registry DEBUG 2024-02-23 13:13:45,074 [pN:main,p:74649,tN:MainThread] Retrieved datatype module galaxy.datatypes.xml:GenericXml from the datatype registry for extension xml. galaxy.datatypes.registry DEBUG 2024-02-23 13:13:45,074 [pN:main,p:74649,tN:MainThread] Retrieved datatype module galaxy.datatypes.xml:GenericXml from the datatype registry for extension xsd. galaxy.datatypes.registry DEBUG 2024-02-23 13:13:45,074 [pN:main,p:74649,tN:MainThread] Retrieved datatype module galaxy.datatypes.xml:Dzi from the datatype registry for extension dzi. galaxy.datatypes.registry DEBUG 2024-02-23 13:13:45,075 [pN:main,p:74649,tN:MainThread] Retrieved datatype module galaxy.datatypes.tabular:Vcf from the datatype registry for extension vcf. galaxy.datatypes.registry DEBUG 2024-02-23 13:13:45,075 [pN:main,p:74649,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:Bcf from the datatype registry for extension bcf. galaxy.datatypes.registry DEBUG 2024-02-23 13:13:45,075 [pN:main,p:74649,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:Bcf from the datatype registry for extension bcf_bgzip. galaxy.datatypes.registry DEBUG 2024-02-23 13:13:45,076 [pN:main,p:74649,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:BcfUncompressed from the datatype registry for extension bcf_uncompressed. galaxy.datatypes.registry DEBUG 2024-02-23 13:13:45,076 [pN:main,p:74649,tN:MainThread] Retrieved datatype module galaxy.datatypes.assembly:Velvet from the datatype registry for extension velvet. galaxy.datatypes.registry DEBUG 2024-02-23 13:13:45,076 [pN:main,p:74649,tN:MainThread] Retrieved datatype module galaxy.datatypes.interval:Wiggle from the datatype registry for extension wig. galaxy.datatypes.registry DEBUG 2024-02-23 13:13:45,076 [pN:main,p:74649,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:Binary from the datatype registry for extension interval_index. galaxy.datatypes.registry DEBUG 2024-02-23 13:13:45,077 [pN:main,p:74649,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:Binary from the datatype registry for extension odgi. galaxy.datatypes.registry DEBUG 2024-02-23 13:13:45,077 [pN:main,p:74649,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:CompressedArchive from the datatype registry for extension vg. galaxy.datatypes.registry DEBUG 2024-02-23 13:13:45,077 [pN:main,p:74649,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:Binary from the datatype registry for extension xg. galaxy.datatypes.registry DEBUG 2024-02-23 13:13:45,077 [pN:main,p:74649,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:Binary from the datatype registry for extension protobuf2. galaxy.datatypes.registry DEBUG 2024-02-23 13:13:45,077 [pN:main,p:74649,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:Binary from the datatype registry for extension protobuf3. galaxy.datatypes.registry DEBUG 2024-02-23 13:13:45,077 [pN:main,p:74649,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:Binary from the datatype registry for extension onnx. galaxy.datatypes.registry DEBUG 2024-02-23 13:13:45,077 [pN:main,p:74649,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:Binary from the datatype registry for extension tabix. galaxy.datatypes.registry DEBUG 2024-02-23 13:13:45,078 [pN:main,p:74649,tN:MainThread] Retrieved datatype module galaxy.datatypes.interval:IntervalTabix from the datatype registry for extension interval_tabix.gz. galaxy.datatypes.registry DEBUG 2024-02-23 13:13:45,078 [pN:main,p:74649,tN:MainThread] Retrieved datatype module galaxy.datatypes.interval:JuicerMediumTabix from the datatype registry for extension juicer_medium_tabix.gz. galaxy.datatypes.registry DEBUG 2024-02-23 13:13:45,078 [pN:main,p:74649,tN:MainThread] Retrieved datatype module galaxy.datatypes.interval:BedTabix from the datatype registry for extension bed_tabix.gz. galaxy.datatypes.registry DEBUG 2024-02-23 13:13:45,078 [pN:main,p:74649,tN:MainThread] Retrieved datatype module galaxy.datatypes.interval:GffTabix from the datatype registry for extension gff_tabix.gz. galaxy.datatypes.registry DEBUG 2024-02-23 13:13:45,078 [pN:main,p:74649,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:Binary from the datatype registry for extension bgzip. galaxy.datatypes.registry DEBUG 2024-02-23 13:13:45,078 [pN:main,p:74649,tN:MainThread] Retrieved datatype module galaxy.datatypes.tabular:VcfGz from the datatype registry for extension vcf_bgzip. galaxy.datatypes.registry DEBUG 2024-02-23 13:13:45,078 [pN:main,p:74649,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:Binary from the datatype registry for extension bus. galaxy.datatypes.registry DEBUG 2024-02-23 13:13:45,078 [pN:main,p:74649,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:Binary from the datatype registry for extension kallisto.idx. galaxy.datatypes.registry DEBUG 2024-02-23 13:13:45,078 [pN:main,p:74649,tN:MainThread] Retrieved datatype module galaxy.datatypes.xml:Phyloxml from the datatype registry for extension phyloxml. galaxy.datatypes.registry DEBUG 2024-02-23 13:13:45,078 [pN:main,p:74649,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:Newick from the datatype registry for extension newick. galaxy.datatypes.registry DEBUG 2024-02-23 13:13:45,079 [pN:main,p:74649,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:Newick from the datatype registry for extension nhx. galaxy.datatypes.registry DEBUG 2024-02-23 13:13:45,079 [pN:main,p:74649,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:Nexus from the datatype registry for extension nex. galaxy.datatypes.registry DEBUG 2024-02-23 13:13:45,079 [pN:main,p:74649,tN:MainThread] Retrieved datatype module galaxy.datatypes.text:IQTree from the datatype registry for extension iqtree. galaxy.datatypes.registry DEBUG 2024-02-23 13:13:45,080 [pN:main,p:74649,tN:MainThread] Retrieved datatype module galaxy.datatypes.mothur:SquareDistanceMatrix from the datatype registry for extension mldist. galaxy.datatypes.registry DEBUG 2024-02-23 13:13:45,083 [pN:main,p:74649,tN:MainThread] Retrieved datatype module galaxy.datatypes.genetics:Affybatch from the datatype registry for extension affybatch. galaxy.datatypes.registry DEBUG 2024-02-23 13:13:45,083 [pN:main,p:74649,tN:MainThread] Retrieved datatype module galaxy.datatypes.genetics:Eigenstratgeno from the datatype registry for extension eigenstratgeno. galaxy.datatypes.registry DEBUG 2024-02-23 13:13:45,083 [pN:main,p:74649,tN:MainThread] Retrieved datatype module galaxy.datatypes.genetics:Eigenstratpca from the datatype registry for extension eigenstratpca. galaxy.datatypes.registry DEBUG 2024-02-23 13:13:45,083 [pN:main,p:74649,tN:MainThread] Retrieved datatype module galaxy.datatypes.genetics:Eset from the datatype registry for extension eset. galaxy.datatypes.registry DEBUG 2024-02-23 13:13:45,084 [pN:main,p:74649,tN:MainThread] Retrieved datatype module galaxy.datatypes.genetics:Fped from the datatype registry for extension fped. galaxy.datatypes.registry DEBUG 2024-02-23 13:13:45,084 [pN:main,p:74649,tN:MainThread] Retrieved datatype module galaxy.datatypes.genetics:Fphe from the datatype registry for extension fphe. galaxy.datatypes.registry DEBUG 2024-02-23 13:13:45,084 [pN:main,p:74649,tN:MainThread] Retrieved datatype module galaxy.datatypes.genetics:GenomeGraphs from the datatype registry for extension gg. galaxy.datatypes.registry DEBUG 2024-02-23 13:13:45,084 [pN:main,p:74649,tN:MainThread] Retrieved datatype module galaxy.datatypes.genetics:ldIndep from the datatype registry for extension ldindep. galaxy.datatypes.registry DEBUG 2024-02-23 13:13:45,084 [pN:main,p:74649,tN:MainThread] Retrieved datatype module galaxy.datatypes.genetics:MAlist from the datatype registry for extension malist. galaxy.datatypes.registry DEBUG 2024-02-23 13:13:45,084 [pN:main,p:74649,tN:MainThread] Retrieved datatype module galaxy.datatypes.genetics:Lped from the datatype registry for extension lped. galaxy.datatypes.registry DEBUG 2024-02-23 13:13:45,084 [pN:main,p:74649,tN:MainThread] Retrieved datatype module galaxy.datatypes.genetics:Pbed from the datatype registry for extension pbed. galaxy.datatypes.registry DEBUG 2024-02-23 13:13:45,084 [pN:main,p:74649,tN:MainThread] Retrieved datatype module galaxy.datatypes.genetics:Pheno from the datatype registry for extension pheno. galaxy.datatypes.registry DEBUG 2024-02-23 13:13:45,084 [pN:main,p:74649,tN:MainThread] Retrieved datatype module galaxy.datatypes.genetics:Pphe from the datatype registry for extension pphe. galaxy.datatypes.registry DEBUG 2024-02-23 13:13:45,085 [pN:main,p:74649,tN:MainThread] Retrieved datatype module galaxy.datatypes.genetics:RexpBase from the datatype registry for extension rexpbase. galaxy.datatypes.registry DEBUG 2024-02-23 13:13:45,085 [pN:main,p:74649,tN:MainThread] Retrieved datatype module galaxy.datatypes.genetics:Rgenetics from the datatype registry for extension rgenetics. galaxy.datatypes.registry DEBUG 2024-02-23 13:13:45,085 [pN:main,p:74649,tN:MainThread] Retrieved datatype module galaxy.datatypes.genetics:Snptest from the datatype registry for extension snptest. galaxy.datatypes.registry DEBUG 2024-02-23 13:13:45,085 [pN:main,p:74649,tN:MainThread] Retrieved datatype module galaxy.datatypes.genetics:SNPMatrix from the datatype registry for extension snpmatrix. galaxy.datatypes.registry DEBUG 2024-02-23 13:13:45,085 [pN:main,p:74649,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:ExcelXls from the datatype registry for extension xls. galaxy.datatypes.registry DEBUG 2024-02-23 13:13:45,085 [pN:main,p:74649,tN:MainThread] Retrieved datatype module galaxy.datatypes.text:Ipynb from the datatype registry for extension ipynb. galaxy.datatypes.registry DEBUG 2024-02-23 13:13:45,085 [pN:main,p:74649,tN:MainThread] Retrieved datatype module galaxy.datatypes.text:Json from the datatype registry for extension json. galaxy.datatypes.registry DEBUG 2024-02-23 13:13:45,085 [pN:main,p:74649,tN:MainThread] Retrieved datatype module galaxy.datatypes.text:ExpressionJson from the datatype registry for extension expression.json. galaxy.datatypes.registry DEBUG 2024-02-23 13:13:45,086 [pN:main,p:74649,tN:MainThread] Retrieved datatype module galaxy.datatypes.graph:Xgmml from the datatype registry for extension xgmml. galaxy.datatypes.registry DEBUG 2024-02-23 13:13:45,086 [pN:main,p:74649,tN:MainThread] Retrieved datatype module galaxy.datatypes.graph:Sif from the datatype registry for extension sif. galaxy.datatypes.registry DEBUG 2024-02-23 13:13:45,087 [pN:main,p:74649,tN:MainThread] Retrieved datatype module galaxy.datatypes.triples:Triples from the datatype registry for extension triples. galaxy.datatypes.registry DEBUG 2024-02-23 13:13:45,087 [pN:main,p:74649,tN:MainThread] Retrieved datatype module galaxy.datatypes.triples:HDT from the datatype registry for extension hdt. galaxy.datatypes.registry DEBUG 2024-02-23 13:13:45,088 [pN:main,p:74649,tN:MainThread] Retrieved datatype module galaxy.datatypes.triples:NTriples from the datatype registry for extension nt. galaxy.datatypes.registry DEBUG 2024-02-23 13:13:45,088 [pN:main,p:74649,tN:MainThread] Retrieved datatype module galaxy.datatypes.triples:N3 from the datatype registry for extension n3. galaxy.datatypes.registry DEBUG 2024-02-23 13:13:45,088 [pN:main,p:74649,tN:MainThread] Retrieved datatype module galaxy.datatypes.triples:Turtle from the datatype registry for extension ttl. galaxy.datatypes.registry DEBUG 2024-02-23 13:13:45,088 [pN:main,p:74649,tN:MainThread] Retrieved datatype module galaxy.datatypes.triples:Rdf from the datatype registry for extension rdf. galaxy.datatypes.registry DEBUG 2024-02-23 13:13:45,088 [pN:main,p:74649,tN:MainThread] Retrieved datatype module galaxy.datatypes.triples:Jsonld from the datatype registry for extension jsonld. galaxy.datatypes.registry DEBUG 2024-02-23 13:13:45,088 [pN:main,p:74649,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:ExcelXls from the datatype registry for extension excel.xls. galaxy.datatypes.registry DEBUG 2024-02-23 13:13:45,088 [pN:main,p:74649,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:Xlsx from the datatype registry for extension xlsx. galaxy.datatypes.registry DEBUG 2024-02-23 13:13:45,088 [pN:main,p:74649,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:Binary from the datatype registry for extension docx. galaxy.datatypes.registry DEBUG 2024-02-23 13:13:45,088 [pN:main,p:74649,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension btwisted. galaxy.datatypes.registry DEBUG 2024-02-23 13:13:45,088 [pN:main,p:74649,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension cai. galaxy.datatypes.registry DEBUG 2024-02-23 13:13:45,089 [pN:main,p:74649,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension cat_db. galaxy.datatypes.registry DEBUG 2024-02-23 13:13:45,089 [pN:main,p:74649,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension charge. galaxy.datatypes.registry DEBUG 2024-02-23 13:13:45,089 [pN:main,p:74649,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension checktrans. galaxy.datatypes.registry DEBUG 2024-02-23 13:13:45,089 [pN:main,p:74649,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension chips. galaxy.datatypes.registry DEBUG 2024-02-23 13:13:45,089 [pN:main,p:74649,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension codcmp. galaxy.datatypes.registry DEBUG 2024-02-23 13:13:45,089 [pN:main,p:74649,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension coderet. galaxy.datatypes.registry DEBUG 2024-02-23 13:13:45,089 [pN:main,p:74649,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension compseq. galaxy.datatypes.registry DEBUG 2024-02-23 13:13:45,089 [pN:main,p:74649,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension cpgplot. galaxy.datatypes.registry DEBUG 2024-02-23 13:13:45,090 [pN:main,p:74649,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension cpgreport. galaxy.datatypes.registry DEBUG 2024-02-23 13:13:45,090 [pN:main,p:74649,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension cusp. galaxy.datatypes.registry DEBUG 2024-02-23 13:13:45,090 [pN:main,p:74649,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension cut. galaxy.datatypes.registry DEBUG 2024-02-23 13:13:45,090 [pN:main,p:74649,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension dan. galaxy.datatypes.registry DEBUG 2024-02-23 13:13:45,090 [pN:main,p:74649,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension digest. galaxy.datatypes.registry DEBUG 2024-02-23 13:13:45,090 [pN:main,p:74649,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension dreg. galaxy.datatypes.registry DEBUG 2024-02-23 13:13:45,090 [pN:main,p:74649,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension einverted. galaxy.datatypes.registry DEBUG 2024-02-23 13:13:45,090 [pN:main,p:74649,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension epestfind. galaxy.datatypes.registry DEBUG 2024-02-23 13:13:45,090 [pN:main,p:74649,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension equicktandem. galaxy.datatypes.registry DEBUG 2024-02-23 13:13:45,091 [pN:main,p:74649,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension est2genome. galaxy.datatypes.registry DEBUG 2024-02-23 13:13:45,091 [pN:main,p:74649,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension etandem. galaxy.datatypes.registry DEBUG 2024-02-23 13:13:45,091 [pN:main,p:74649,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension freak. galaxy.datatypes.registry DEBUG 2024-02-23 13:13:45,091 [pN:main,p:74649,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension fuzznuc. galaxy.datatypes.registry DEBUG 2024-02-23 13:13:45,091 [pN:main,p:74649,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension fuzzpro. galaxy.datatypes.registry DEBUG 2024-02-23 13:13:45,091 [pN:main,p:74649,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension fuzztran. galaxy.datatypes.registry DEBUG 2024-02-23 13:13:45,091 [pN:main,p:74649,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension garnier. galaxy.datatypes.registry DEBUG 2024-02-23 13:13:45,091 [pN:main,p:74649,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension geecee. galaxy.datatypes.registry DEBUG 2024-02-23 13:13:45,091 [pN:main,p:74649,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension helixturnhelix. galaxy.datatypes.registry DEBUG 2024-02-23 13:13:45,092 [pN:main,p:74649,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension hmoment. galaxy.datatypes.registry DEBUG 2024-02-23 13:13:45,092 [pN:main,p:74649,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension isochore. galaxy.datatypes.registry DEBUG 2024-02-23 13:13:45,092 [pN:main,p:74649,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension match. galaxy.datatypes.registry DEBUG 2024-02-23 13:13:45,092 [pN:main,p:74649,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension nametable. galaxy.datatypes.registry DEBUG 2024-02-23 13:13:45,092 [pN:main,p:74649,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension needle. galaxy.datatypes.registry DEBUG 2024-02-23 13:13:45,092 [pN:main,p:74649,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension newcpgreport. galaxy.datatypes.registry DEBUG 2024-02-23 13:13:45,092 [pN:main,p:74649,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension newcpgseek. galaxy.datatypes.registry DEBUG 2024-02-23 13:13:45,092 [pN:main,p:74649,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension noreturn. galaxy.datatypes.registry DEBUG 2024-02-23 13:13:45,092 [pN:main,p:74649,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension palindrome. galaxy.datatypes.registry DEBUG 2024-02-23 13:13:45,093 [pN:main,p:74649,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension pepcoil. galaxy.datatypes.registry DEBUG 2024-02-23 13:13:45,093 [pN:main,p:74649,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension pepinfo. galaxy.datatypes.registry DEBUG 2024-02-23 13:13:45,093 [pN:main,p:74649,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension pepstats. galaxy.datatypes.registry DEBUG 2024-02-23 13:13:45,093 [pN:main,p:74649,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension polydot. galaxy.datatypes.registry DEBUG 2024-02-23 13:13:45,093 [pN:main,p:74649,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension preg. galaxy.datatypes.registry DEBUG 2024-02-23 13:13:45,093 [pN:main,p:74649,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension prettyseq. galaxy.datatypes.registry DEBUG 2024-02-23 13:13:45,093 [pN:main,p:74649,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension primersearch. galaxy.datatypes.registry DEBUG 2024-02-23 13:13:45,093 [pN:main,p:74649,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension showfeat. galaxy.datatypes.registry DEBUG 2024-02-23 13:13:45,093 [pN:main,p:74649,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension showorf. galaxy.datatypes.registry DEBUG 2024-02-23 13:13:45,094 [pN:main,p:74649,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension sixpack. galaxy.datatypes.registry DEBUG 2024-02-23 13:13:45,094 [pN:main,p:74649,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension strider. galaxy.datatypes.registry DEBUG 2024-02-23 13:13:45,094 [pN:main,p:74649,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension supermatcher. galaxy.datatypes.registry DEBUG 2024-02-23 13:13:45,094 [pN:main,p:74649,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension syco. galaxy.datatypes.registry DEBUG 2024-02-23 13:13:45,094 [pN:main,p:74649,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension textsearch. galaxy.datatypes.registry DEBUG 2024-02-23 13:13:45,094 [pN:main,p:74649,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension vectorstrip. galaxy.datatypes.registry DEBUG 2024-02-23 13:13:45,094 [pN:main,p:74649,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension wobble. galaxy.datatypes.registry DEBUG 2024-02-23 13:13:45,094 [pN:main,p:74649,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension wordcount. galaxy.datatypes.registry DEBUG 2024-02-23 13:13:45,095 [pN:main,p:74649,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension dbmotif. galaxy.datatypes.registry DEBUG 2024-02-23 13:13:45,095 [pN:main,p:74649,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension diffseq. galaxy.datatypes.registry DEBUG 2024-02-23 13:13:45,095 [pN:main,p:74649,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension excel. galaxy.datatypes.registry DEBUG 2024-02-23 13:13:45,095 [pN:main,p:74649,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension feattable. galaxy.datatypes.registry DEBUG 2024-02-23 13:13:45,095 [pN:main,p:74649,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension motif. galaxy.datatypes.registry DEBUG 2024-02-23 13:13:45,095 [pN:main,p:74649,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension regions. galaxy.datatypes.registry DEBUG 2024-02-23 13:13:45,095 [pN:main,p:74649,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension seqtable. galaxy.datatypes.registry DEBUG 2024-02-23 13:13:45,095 [pN:main,p:74649,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension simple. galaxy.datatypes.registry DEBUG 2024-02-23 13:13:45,095 [pN:main,p:74649,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension table. galaxy.datatypes.registry DEBUG 2024-02-23 13:13:45,096 [pN:main,p:74649,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension tagseq. galaxy.datatypes.registry DEBUG 2024-02-23 13:13:45,096 [pN:main,p:74649,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension acedb. galaxy.datatypes.registry DEBUG 2024-02-23 13:13:45,096 [pN:main,p:74649,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension clustal. galaxy.datatypes.registry DEBUG 2024-02-23 13:13:45,096 [pN:main,p:74649,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension codata. galaxy.datatypes.registry DEBUG 2024-02-23 13:13:45,096 [pN:main,p:74649,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension embl. galaxy.datatypes.registry DEBUG 2024-02-23 13:13:45,096 [pN:main,p:74649,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension fitch. galaxy.datatypes.registry DEBUG 2024-02-23 13:13:45,096 [pN:main,p:74649,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension gcg. galaxy.datatypes.registry DEBUG 2024-02-23 13:13:45,096 [pN:main,p:74649,tN:MainThread] Retrieved datatype module galaxy.datatypes.sequence:Genbank from the datatype registry for extension genbank. galaxy.datatypes.registry DEBUG 2024-02-23 13:13:45,097 [pN:main,p:74649,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension hennig86. galaxy.datatypes.registry DEBUG 2024-02-23 13:13:45,097 [pN:main,p:74649,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension ig. galaxy.datatypes.registry DEBUG 2024-02-23 13:13:45,097 [pN:main,p:74649,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension jackknifer. galaxy.datatypes.registry DEBUG 2024-02-23 13:13:45,097 [pN:main,p:74649,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension jackknifernon. galaxy.datatypes.registry DEBUG 2024-02-23 13:13:45,097 [pN:main,p:74649,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension mega. galaxy.datatypes.registry DEBUG 2024-02-23 13:13:45,097 [pN:main,p:74649,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension meganon. galaxy.datatypes.registry DEBUG 2024-02-23 13:13:45,097 [pN:main,p:74649,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension ncbi. galaxy.datatypes.registry DEBUG 2024-02-23 13:13:45,097 [pN:main,p:74649,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension nexus. galaxy.datatypes.registry DEBUG 2024-02-23 13:13:45,097 [pN:main,p:74649,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension nexusnon. galaxy.datatypes.registry DEBUG 2024-02-23 13:13:45,098 [pN:main,p:74649,tN:MainThread] Retrieved datatype module galaxy.datatypes.phylip:Phylip from the datatype registry for extension phylip. galaxy.datatypes.registry DEBUG 2024-02-23 13:13:45,098 [pN:main,p:74649,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension phylipnon. galaxy.datatypes.registry DEBUG 2024-02-23 13:13:45,098 [pN:main,p:74649,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension pir. galaxy.datatypes.registry DEBUG 2024-02-23 13:13:45,098 [pN:main,p:74649,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension staden. galaxy.datatypes.registry DEBUG 2024-02-23 13:13:45,098 [pN:main,p:74649,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension swiss. galaxy.datatypes.registry DEBUG 2024-02-23 13:13:45,099 [pN:main,p:74649,tN:MainThread] Retrieved datatype module galaxy.datatypes.msa:Msf from the datatype registry for extension msf. galaxy.datatypes.registry DEBUG 2024-02-23 13:13:45,100 [pN:main,p:74649,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension markx0. galaxy.datatypes.registry DEBUG 2024-02-23 13:13:45,100 [pN:main,p:74649,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension markx1. galaxy.datatypes.registry DEBUG 2024-02-23 13:13:45,100 [pN:main,p:74649,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension markx10. galaxy.datatypes.registry DEBUG 2024-02-23 13:13:45,100 [pN:main,p:74649,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension markx2. galaxy.datatypes.registry DEBUG 2024-02-23 13:13:45,100 [pN:main,p:74649,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension markx3. galaxy.datatypes.registry DEBUG 2024-02-23 13:13:45,100 [pN:main,p:74649,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension pair. galaxy.datatypes.registry DEBUG 2024-02-23 13:13:45,100 [pN:main,p:74649,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension score. galaxy.datatypes.registry DEBUG 2024-02-23 13:13:45,100 [pN:main,p:74649,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension srs. galaxy.datatypes.registry DEBUG 2024-02-23 13:13:45,101 [pN:main,p:74649,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension srspair. galaxy.datatypes.registry DEBUG 2024-02-23 13:13:45,101 [pN:main,p:74649,tN:MainThread] Retrieved datatype module galaxy.datatypes.annotation:SnapHmm from the datatype registry for extension snaphmm. galaxy.datatypes.registry DEBUG 2024-02-23 13:13:45,101 [pN:main,p:74649,tN:MainThread] Retrieved datatype module galaxy.datatypes.annotation:Augustus from the datatype registry for extension augustus. galaxy.datatypes.registry DEBUG 2024-02-23 13:13:45,101 [pN:main,p:74649,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:ICM from the datatype registry for extension icm. galaxy.datatypes.registry DEBUG 2024-02-23 13:13:45,101 [pN:main,p:74649,tN:MainThread] Retrieved datatype module galaxy.datatypes.msa:InfernalCM from the datatype registry for extension cm. galaxy.datatypes.registry DEBUG 2024-02-23 13:13:45,102 [pN:main,p:74649,tN:MainThread] Retrieved datatype module galaxy.datatypes.msa:Hmmer2 from the datatype registry for extension hmm2. galaxy.datatypes.registry DEBUG 2024-02-23 13:13:45,102 [pN:main,p:74649,tN:MainThread] Retrieved datatype module galaxy.datatypes.msa:Hmmer3 from the datatype registry for extension hmm3. galaxy.datatypes.registry DEBUG 2024-02-23 13:13:45,102 [pN:main,p:74649,tN:MainThread] Retrieved datatype module galaxy.datatypes.msa:Stockholm_1_0 from the datatype registry for extension stockholm. galaxy.datatypes.registry DEBUG 2024-02-23 13:13:45,102 [pN:main,p:74649,tN:MainThread] Retrieved datatype module galaxy.datatypes.msa:MauveXmfa from the datatype registry for extension xmfa. galaxy.datatypes.registry DEBUG 2024-02-23 13:13:45,102 [pN:main,p:74649,tN:MainThread] Retrieved datatype module galaxy.datatypes.microarrays:Cel from the datatype registry for extension cel. galaxy.datatypes.registry DEBUG 2024-02-23 13:13:45,102 [pN:main,p:74649,tN:MainThread] Retrieved datatype module galaxy.datatypes.microarrays:Gpr from the datatype registry for extension gpr. galaxy.datatypes.registry DEBUG 2024-02-23 13:13:45,103 [pN:main,p:74649,tN:MainThread] Retrieved datatype module galaxy.datatypes.microarrays:Gal from the datatype registry for extension gal. galaxy.datatypes.registry DEBUG 2024-02-23 13:13:45,103 [pN:main,p:74649,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:RDS from the datatype registry for extension rds. galaxy.datatypes.registry DEBUG 2024-02-23 13:13:45,103 [pN:main,p:74649,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:RDS from the datatype registry for extension phyloseq. galaxy.datatypes.registry DEBUG 2024-02-23 13:13:45,103 [pN:main,p:74649,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:RData from the datatype registry for extension rdata. galaxy.datatypes.registry DEBUG 2024-02-23 13:13:45,103 [pN:main,p:74649,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:RData from the datatype registry for extension rdata.sce. galaxy.datatypes.registry DEBUG 2024-02-23 13:13:45,103 [pN:main,p:74649,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:RData from the datatype registry for extension rdata.xcms.raw. galaxy.datatypes.registry DEBUG 2024-02-23 13:13:45,103 [pN:main,p:74649,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:RData from the datatype registry for extension rdata.msnbase.raw. galaxy.datatypes.registry DEBUG 2024-02-23 13:13:45,103 [pN:main,p:74649,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:RData from the datatype registry for extension rdata.xcms.findchrompeaks. galaxy.datatypes.registry DEBUG 2024-02-23 13:13:45,104 [pN:main,p:74649,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:RData from the datatype registry for extension rdata.xcms.group. galaxy.datatypes.registry DEBUG 2024-02-23 13:13:45,104 [pN:main,p:74649,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:RData from the datatype registry for extension rdata.xcms.retcor. galaxy.datatypes.registry DEBUG 2024-02-23 13:13:45,104 [pN:main,p:74649,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:RData from the datatype registry for extension rdata.xcms.fillpeaks. galaxy.datatypes.registry DEBUG 2024-02-23 13:13:45,104 [pN:main,p:74649,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:RData from the datatype registry for extension rdata.camera.positive. galaxy.datatypes.registry DEBUG 2024-02-23 13:13:45,104 [pN:main,p:74649,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:RData from the datatype registry for extension rdata.camera.negative. galaxy.datatypes.registry DEBUG 2024-02-23 13:13:45,104 [pN:main,p:74649,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:RData from the datatype registry for extension rdata.camera.quick. galaxy.datatypes.registry DEBUG 2024-02-23 13:13:45,105 [pN:main,p:74649,tN:MainThread] Retrieved datatype module galaxy.datatypes.hdf5:HDF5SummarizedExperiment from the datatype registry for extension rdata.se. galaxy.datatypes.registry DEBUG 2024-02-23 13:13:45,105 [pN:main,p:74649,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:Binary from the datatype registry for extension rdock_as. galaxy.datatypes.registry DEBUG 2024-02-23 13:13:45,105 [pN:main,p:74649,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:OxliCountGraph from the datatype registry for extension oxlicg. galaxy.datatypes.registry DEBUG 2024-02-23 13:13:45,105 [pN:main,p:74649,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:OxliNodeGraph from the datatype registry for extension oxling. galaxy.datatypes.registry DEBUG 2024-02-23 13:13:45,105 [pN:main,p:74649,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:OxliTagSet from the datatype registry for extension oxlits. galaxy.datatypes.registry DEBUG 2024-02-23 13:13:45,105 [pN:main,p:74649,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:OxliStopTags from the datatype registry for extension oxlist. galaxy.datatypes.registry DEBUG 2024-02-23 13:13:45,105 [pN:main,p:74649,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:OxliSubset from the datatype registry for extension oxliss. galaxy.datatypes.registry DEBUG 2024-02-23 13:13:45,105 [pN:main,p:74649,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:OxliGraphLabels from the datatype registry for extension oxligl. galaxy.datatypes.registry DEBUG 2024-02-23 13:13:45,107 [pN:main,p:74649,tN:MainThread] Retrieved datatype module galaxy.datatypes.constructive_solid_geometry:STL from the datatype registry for extension stl. galaxy.datatypes.registry DEBUG 2024-02-23 13:13:45,107 [pN:main,p:74649,tN:MainThread] Retrieved datatype module galaxy.datatypes.constructive_solid_geometry:PlyAscii from the datatype registry for extension plyascii. galaxy.datatypes.registry DEBUG 2024-02-23 13:13:45,107 [pN:main,p:74649,tN:MainThread] Retrieved datatype module galaxy.datatypes.constructive_solid_geometry:PlyBinary from the datatype registry for extension plybinary. galaxy.datatypes.registry DEBUG 2024-02-23 13:13:45,107 [pN:main,p:74649,tN:MainThread] Retrieved datatype module galaxy.datatypes.constructive_solid_geometry:VtkAscii from the datatype registry for extension vtkascii. galaxy.datatypes.registry DEBUG 2024-02-23 13:13:45,107 [pN:main,p:74649,tN:MainThread] Retrieved datatype module galaxy.datatypes.constructive_solid_geometry:VtkBinary from the datatype registry for extension vtkbinary. galaxy.datatypes.registry DEBUG 2024-02-23 13:13:45,107 [pN:main,p:74649,tN:MainThread] Retrieved datatype module galaxy.datatypes.text:Biom1 from the datatype registry for extension biom1. galaxy.datatypes.registry DEBUG 2024-02-23 13:13:45,107 [pN:main,p:74649,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:Biom2 from the datatype registry for extension biom2. galaxy.datatypes.registry DEBUG 2024-02-23 13:13:45,108 [pN:main,p:74649,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:MashSketch from the datatype registry for extension msh. galaxy.datatypes.registry DEBUG 2024-02-23 13:13:45,108 [pN:main,p:74649,tN:MainThread] Retrieved datatype module galaxy.datatypes.interval:ScIdx from the datatype registry for extension scidx. galaxy.datatypes.registry DEBUG 2024-02-23 13:13:45,110 [pN:main,p:74649,tN:MainThread] Retrieved datatype module galaxy.datatypes.molecules:SMILES from the datatype registry for extension smi. galaxy.datatypes.registry DEBUG 2024-02-23 13:13:45,110 [pN:main,p:74649,tN:MainThread] Retrieved datatype module galaxy.datatypes.molecules:SDF from the datatype registry for extension sdf. galaxy.datatypes.registry DEBUG 2024-02-23 13:13:45,110 [pN:main,p:74649,tN:MainThread] Retrieved datatype module galaxy.datatypes.molecules:InChI from the datatype registry for extension inchi. galaxy.datatypes.registry DEBUG 2024-02-23 13:13:45,110 [pN:main,p:74649,tN:MainThread] Retrieved datatype module galaxy.datatypes.molecules:MOL from the datatype registry for extension mol. galaxy.datatypes.registry DEBUG 2024-02-23 13:13:45,110 [pN:main,p:74649,tN:MainThread] Retrieved datatype module galaxy.datatypes.molecules:MOL2 from the datatype registry for extension mol2. galaxy.datatypes.registry DEBUG 2024-02-23 13:13:45,110 [pN:main,p:74649,tN:MainThread] Retrieved datatype module galaxy.datatypes.molecules:CML from the datatype registry for extension cml. galaxy.datatypes.registry DEBUG 2024-02-23 13:13:45,110 [pN:main,p:74649,tN:MainThread] Retrieved datatype module galaxy.datatypes.molecules:FPS from the datatype registry for extension fps. galaxy.datatypes.registry DEBUG 2024-02-23 13:13:45,111 [pN:main,p:74649,tN:MainThread] Retrieved datatype module galaxy.datatypes.molecules:OBFS from the datatype registry for extension obfs. galaxy.datatypes.registry DEBUG 2024-02-23 13:13:45,111 [pN:main,p:74649,tN:MainThread] Retrieved datatype module galaxy.datatypes.molecules:DRF from the datatype registry for extension drf. galaxy.datatypes.registry DEBUG 2024-02-23 13:13:45,111 [pN:main,p:74649,tN:MainThread] Retrieved datatype module galaxy.datatypes.molecules:PHAR from the datatype registry for extension phar. galaxy.datatypes.registry DEBUG 2024-02-23 13:13:45,111 [pN:main,p:74649,tN:MainThread] Retrieved datatype module galaxy.datatypes.molecules:PDB from the datatype registry for extension pdb. galaxy.datatypes.registry DEBUG 2024-02-23 13:13:45,111 [pN:main,p:74649,tN:MainThread] Retrieved datatype module galaxy.datatypes.molecules:PDBQT from the datatype registry for extension pdbqt. galaxy.datatypes.registry DEBUG 2024-02-23 13:13:45,111 [pN:main,p:74649,tN:MainThread] Retrieved datatype module galaxy.datatypes.molecules:PQR from the datatype registry for extension pqr. galaxy.datatypes.registry DEBUG 2024-02-23 13:13:45,111 [pN:main,p:74649,tN:MainThread] Retrieved datatype module galaxy.datatypes.molecules:Cell from the datatype registry for extension cell. galaxy.datatypes.registry DEBUG 2024-02-23 13:13:45,111 [pN:main,p:74649,tN:MainThread] Retrieved datatype module galaxy.datatypes.molecules:CIF from the datatype registry for extension cif. galaxy.datatypes.registry DEBUG 2024-02-23 13:13:45,111 [pN:main,p:74649,tN:MainThread] Retrieved datatype module galaxy.datatypes.molecules:XYZ from the datatype registry for extension xyz. galaxy.datatypes.registry DEBUG 2024-02-23 13:13:45,111 [pN:main,p:74649,tN:MainThread] Retrieved datatype module galaxy.datatypes.molecules:ExtendedXYZ from the datatype registry for extension extxyz. galaxy.datatypes.registry DEBUG 2024-02-23 13:13:45,112 [pN:main,p:74649,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:Trr from the datatype registry for extension trr. galaxy.datatypes.registry DEBUG 2024-02-23 13:13:45,112 [pN:main,p:74649,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:Dcd from the datatype registry for extension dcd. galaxy.datatypes.registry DEBUG 2024-02-23 13:13:45,112 [pN:main,p:74649,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension top. galaxy.datatypes.registry DEBUG 2024-02-23 13:13:45,112 [pN:main,p:74649,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension prmtop. galaxy.datatypes.registry DEBUG 2024-02-23 13:13:45,112 [pN:main,p:74649,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension itp. galaxy.datatypes.registry DEBUG 2024-02-23 13:13:45,112 [pN:main,p:74649,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension mdp. galaxy.datatypes.registry DEBUG 2024-02-23 13:13:45,112 [pN:main,p:74649,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension ndx. galaxy.datatypes.registry DEBUG 2024-02-23 13:13:45,112 [pN:main,p:74649,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension xvg. galaxy.datatypes.registry DEBUG 2024-02-23 13:13:45,112 [pN:main,p:74649,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:Xtc from the datatype registry for extension xtc. galaxy.datatypes.registry DEBUG 2024-02-23 13:13:45,113 [pN:main,p:74649,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:Cpt from the datatype registry for extension cpt. galaxy.datatypes.registry DEBUG 2024-02-23 13:13:45,113 [pN:main,p:74649,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:Edr from the datatype registry for extension edr. galaxy.datatypes.registry DEBUG 2024-02-23 13:13:45,113 [pN:main,p:74649,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:Binary from the datatype registry for extension tpr. galaxy.datatypes.registry DEBUG 2024-02-23 13:13:45,113 [pN:main,p:74649,tN:MainThread] Retrieved datatype module galaxy.datatypes.molecules:GRO from the datatype registry for extension gro. galaxy.datatypes.registry DEBUG 2024-02-23 13:13:45,113 [pN:main,p:74649,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension inpcrd. galaxy.datatypes.registry DEBUG 2024-02-23 13:13:45,113 [pN:main,p:74649,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:Vel from the datatype registry for extension vel. galaxy.datatypes.registry DEBUG 2024-02-23 13:13:45,113 [pN:main,p:74649,tN:MainThread] Retrieved datatype module galaxy.datatypes.molecules:grd from the datatype registry for extension grd. galaxy.datatypes.registry DEBUG 2024-02-23 13:13:45,113 [pN:main,p:74649,tN:MainThread] Retrieved datatype module galaxy.datatypes.molecules:grdtgz from the datatype registry for extension grd.tgz. galaxy.datatypes.registry DEBUG 2024-02-23 13:13:45,113 [pN:main,p:74649,tN:MainThread] Retrieved datatype module galaxy.datatypes.mothur:Otu from the datatype registry for extension mothur.otu. galaxy.datatypes.registry DEBUG 2024-02-23 13:13:45,114 [pN:main,p:74649,tN:MainThread] Retrieved datatype module galaxy.datatypes.mothur:Otu from the datatype registry for extension mothur.list. galaxy.datatypes.registry DEBUG 2024-02-23 13:13:45,114 [pN:main,p:74649,tN:MainThread] Retrieved datatype module galaxy.datatypes.mothur:Sabund from the datatype registry for extension mothur.sabund. galaxy.datatypes.registry DEBUG 2024-02-23 13:13:45,114 [pN:main,p:74649,tN:MainThread] Retrieved datatype module galaxy.datatypes.mothur:Sabund from the datatype registry for extension mothur.rabund. galaxy.datatypes.registry DEBUG 2024-02-23 13:13:45,114 [pN:main,p:74649,tN:MainThread] Retrieved datatype module galaxy.datatypes.mothur:GroupAbund from the datatype registry for extension mothur.shared. galaxy.datatypes.registry DEBUG 2024-02-23 13:13:45,114 [pN:main,p:74649,tN:MainThread] Retrieved datatype module galaxy.datatypes.mothur:GroupAbund from the datatype registry for extension mothur.relabund. galaxy.datatypes.registry DEBUG 2024-02-23 13:13:45,114 [pN:main,p:74649,tN:MainThread] Retrieved datatype module galaxy.datatypes.mothur:Names from the datatype registry for extension mothur.names. galaxy.datatypes.registry DEBUG 2024-02-23 13:13:45,114 [pN:main,p:74649,tN:MainThread] Retrieved datatype module galaxy.datatypes.mothur:Group from the datatype registry for extension mothur.design. galaxy.datatypes.registry DEBUG 2024-02-23 13:13:45,114 [pN:main,p:74649,tN:MainThread] Retrieved datatype module galaxy.datatypes.mothur:Summary from the datatype registry for extension mothur.summary. galaxy.datatypes.registry DEBUG 2024-02-23 13:13:45,115 [pN:main,p:74649,tN:MainThread] Retrieved datatype module galaxy.datatypes.mothur:Group from the datatype registry for extension mothur.groups. galaxy.datatypes.registry DEBUG 2024-02-23 13:13:45,115 [pN:main,p:74649,tN:MainThread] Retrieved datatype module galaxy.datatypes.mothur:Oligos from the datatype registry for extension mothur.oligos. galaxy.datatypes.registry DEBUG 2024-02-23 13:13:45,115 [pN:main,p:74649,tN:MainThread] Retrieved datatype module galaxy.datatypes.sequence:Fasta from the datatype registry for extension mothur.align. galaxy.datatypes.registry DEBUG 2024-02-23 13:13:45,115 [pN:main,p:74649,tN:MainThread] Retrieved datatype module galaxy.datatypes.mothur:AccNos from the datatype registry for extension mothur.accnos. galaxy.datatypes.registry DEBUG 2024-02-23 13:13:45,115 [pN:main,p:74649,tN:MainThread] Retrieved datatype module galaxy.datatypes.mothur:AccNos from the datatype registry for extension mothur.otulabels. galaxy.datatypes.registry DEBUG 2024-02-23 13:13:45,115 [pN:main,p:74649,tN:MainThread] Retrieved datatype module galaxy.datatypes.tabular:Tabular from the datatype registry for extension mothur.otu.corr. galaxy.datatypes.registry DEBUG 2024-02-23 13:13:45,115 [pN:main,p:74649,tN:MainThread] Retrieved datatype module galaxy.datatypes.mothur:SecondaryStructureMap from the datatype registry for extension mothur.map. galaxy.datatypes.registry DEBUG 2024-02-23 13:13:45,115 [pN:main,p:74649,tN:MainThread] Retrieved datatype module galaxy.datatypes.mothur:AlignCheck from the datatype registry for extension mothur.align.check. galaxy.datatypes.registry DEBUG 2024-02-23 13:13:45,115 [pN:main,p:74649,tN:MainThread] Retrieved datatype module galaxy.datatypes.mothur:AlignReport from the datatype registry for extension mothur.align.report. galaxy.datatypes.registry DEBUG 2024-02-23 13:13:45,116 [pN:main,p:74649,tN:MainThread] Retrieved datatype module galaxy.datatypes.mothur:LaneMask from the datatype registry for extension mothur.filter. galaxy.datatypes.registry DEBUG 2024-02-23 13:13:45,116 [pN:main,p:74649,tN:MainThread] Retrieved datatype module galaxy.datatypes.mothur:DistanceMatrix from the datatype registry for extension mothur.dist. galaxy.datatypes.registry DEBUG 2024-02-23 13:13:45,116 [pN:main,p:74649,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension mothur.tre. galaxy.datatypes.registry DEBUG 2024-02-23 13:13:45,116 [pN:main,p:74649,tN:MainThread] Retrieved datatype module galaxy.datatypes.mothur:PairwiseDistanceMatrix from the datatype registry for extension mothur.pair.dist. galaxy.datatypes.registry DEBUG 2024-02-23 13:13:45,116 [pN:main,p:74649,tN:MainThread] Retrieved datatype module galaxy.datatypes.mothur:SquareDistanceMatrix from the datatype registry for extension mothur.square.dist. galaxy.datatypes.registry DEBUG 2024-02-23 13:13:45,116 [pN:main,p:74649,tN:MainThread] Retrieved datatype module galaxy.datatypes.mothur:LowerTriangleDistanceMatrix from the datatype registry for extension mothur.lower.dist. galaxy.datatypes.registry DEBUG 2024-02-23 13:13:45,116 [pN:main,p:74649,tN:MainThread] Retrieved datatype module galaxy.datatypes.mothur:RefTaxonomy from the datatype registry for extension mothur.ref.taxonomy. galaxy.datatypes.registry DEBUG 2024-02-23 13:13:45,116 [pN:main,p:74649,tN:MainThread] Retrieved datatype module galaxy.datatypes.mothur:RefTaxonomy from the datatype registry for extension mothur.seq.taxonomy. galaxy.datatypes.registry DEBUG 2024-02-23 13:13:45,116 [pN:main,p:74649,tN:MainThread] Retrieved datatype module galaxy.datatypes.mothur:RefTaxonomy from the datatype registry for extension mothur.rdp.taxonomy. galaxy.datatypes.registry DEBUG 2024-02-23 13:13:45,117 [pN:main,p:74649,tN:MainThread] Retrieved datatype module galaxy.datatypes.mothur:ConsensusTaxonomy from the datatype registry for extension mothur.cons.taxonomy. galaxy.datatypes.registry DEBUG 2024-02-23 13:13:45,117 [pN:main,p:74649,tN:MainThread] Retrieved datatype module galaxy.datatypes.mothur:TaxonomySummary from the datatype registry for extension mothur.tax.summary. galaxy.datatypes.registry DEBUG 2024-02-23 13:13:45,117 [pN:main,p:74649,tN:MainThread] Retrieved datatype module galaxy.datatypes.mothur:Frequency from the datatype registry for extension mothur.freq. galaxy.datatypes.registry DEBUG 2024-02-23 13:13:45,117 [pN:main,p:74649,tN:MainThread] Retrieved datatype module galaxy.datatypes.mothur:Quantile from the datatype registry for extension mothur.quan. galaxy.datatypes.registry DEBUG 2024-02-23 13:13:45,117 [pN:main,p:74649,tN:MainThread] Retrieved datatype module galaxy.datatypes.mothur:Quantile from the datatype registry for extension mothur.filtered.quan. galaxy.datatypes.registry DEBUG 2024-02-23 13:13:45,117 [pN:main,p:74649,tN:MainThread] Retrieved datatype module galaxy.datatypes.mothur:Quantile from the datatype registry for extension mothur.masked.quan. galaxy.datatypes.registry DEBUG 2024-02-23 13:13:45,117 [pN:main,p:74649,tN:MainThread] Retrieved datatype module galaxy.datatypes.mothur:Quantile from the datatype registry for extension mothur.filtered.masked.quan. galaxy.datatypes.registry DEBUG 2024-02-23 13:13:45,117 [pN:main,p:74649,tN:MainThread] Retrieved datatype module galaxy.datatypes.mothur:Axes from the datatype registry for extension mothur.axes. galaxy.datatypes.registry DEBUG 2024-02-23 13:13:45,117 [pN:main,p:74649,tN:MainThread] Retrieved datatype module galaxy.datatypes.mothur:SffFlow from the datatype registry for extension mothur.sff.flow. galaxy.datatypes.registry DEBUG 2024-02-23 13:13:45,118 [pN:main,p:74649,tN:MainThread] Retrieved datatype module galaxy.datatypes.mothur:CountTable from the datatype registry for extension mothur.count_table. galaxy.datatypes.registry DEBUG 2024-02-23 13:13:45,118 [pN:main,p:74649,tN:MainThread] Retrieved datatype module galaxy.datatypes.neo4j:Neo4jDB from the datatype registry for extension neostore. galaxy.datatypes.registry DEBUG 2024-02-23 13:13:45,118 [pN:main,p:74649,tN:MainThread] Retrieved datatype module galaxy.datatypes.neo4j:Neo4jDBzip from the datatype registry for extension neostore.zip. galaxy.datatypes.registry DEBUG 2024-02-23 13:13:45,118 [pN:main,p:74649,tN:MainThread] Retrieved datatype module galaxy.datatypes.tracks:UCSCTrackHub from the datatype registry for extension trackhub. galaxy.datatypes.registry DEBUG 2024-02-23 13:13:45,119 [pN:main,p:74649,tN:MainThread] Retrieved datatype module galaxy.datatypes.blast:BlastXml from the datatype registry for extension blastxml. galaxy.datatypes.registry DEBUG 2024-02-23 13:13:45,119 [pN:main,p:74649,tN:MainThread] Retrieved datatype module galaxy.datatypes.blast:BlastNucDb from the datatype registry for extension blastdbn. galaxy.datatypes.registry DEBUG 2024-02-23 13:13:45,120 [pN:main,p:74649,tN:MainThread] Retrieved datatype module galaxy.datatypes.blast:BlastProtDb from the datatype registry for extension blastdbp. galaxy.datatypes.registry DEBUG 2024-02-23 13:13:45,120 [pN:main,p:74649,tN:MainThread] Retrieved datatype module galaxy.datatypes.blast:BlastDomainDb from the datatype registry for extension blastdbd. galaxy.datatypes.registry DEBUG 2024-02-23 13:13:45,120 [pN:main,p:74649,tN:MainThread] Retrieved datatype module galaxy.datatypes.blast:LastDb from the datatype registry for extension lastdb. galaxy.datatypes.registry DEBUG 2024-02-23 13:13:45,120 [pN:main,p:74649,tN:MainThread] Retrieved datatype module galaxy.datatypes.blast:BlastNucDb5 from the datatype registry for extension blastdbn5. galaxy.datatypes.registry DEBUG 2024-02-23 13:13:45,120 [pN:main,p:74649,tN:MainThread] Retrieved datatype module galaxy.datatypes.blast:BlastProtDb5 from the datatype registry for extension blastdbp5. galaxy.datatypes.registry DEBUG 2024-02-23 13:13:45,120 [pN:main,p:74649,tN:MainThread] Retrieved datatype module galaxy.datatypes.blast:BlastDomainDb5 from the datatype registry for extension blastdbd5. galaxy.datatypes.registry DEBUG 2024-02-23 13:13:45,120 [pN:main,p:74649,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:GenericAsn1 from the datatype registry for extension maskinfo-asn1. galaxy.datatypes.registry DEBUG 2024-02-23 13:13:45,121 [pN:main,p:74649,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:GenericAsn1Binary from the datatype registry for extension maskinfo-asn1-binary. galaxy.datatypes.registry DEBUG 2024-02-23 13:13:45,121 [pN:main,p:74649,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:GenericAsn1 from the datatype registry for extension pssm-asn1. galaxy.datatypes.registry DEBUG 2024-02-23 13:13:45,121 [pN:main,p:74649,tN:MainThread] Retrieved datatype module galaxy.datatypes.plant_tribes:PlantTribesKsComponents from the datatype registry for extension ptkscmp. galaxy.datatypes.registry DEBUG 2024-02-23 13:13:45,121 [pN:main,p:74649,tN:MainThread] Retrieved datatype module galaxy.datatypes.plant_tribes:Smat from the datatype registry for extension smat. galaxy.datatypes.registry DEBUG 2024-02-23 13:13:45,121 [pN:main,p:74649,tN:MainThread] Retrieved datatype module galaxy.datatypes.genetics:GenotypeMatrix from the datatype registry for extension alohomora_gts. galaxy.datatypes.registry DEBUG 2024-02-23 13:13:45,122 [pN:main,p:74649,tN:MainThread] Retrieved datatype module galaxy.datatypes.tabular:Tabular from the datatype registry for extension alohomora_map. galaxy.datatypes.registry DEBUG 2024-02-23 13:13:45,122 [pN:main,p:74649,tN:MainThread] Retrieved datatype module galaxy.datatypes.tabular:Tabular from the datatype registry for extension alohomora_maf. galaxy.datatypes.registry DEBUG 2024-02-23 13:13:45,122 [pN:main,p:74649,tN:MainThread] Retrieved datatype module galaxy.datatypes.tabular:Tabular from the datatype registry for extension alohomora_ped. galaxy.datatypes.registry DEBUG 2024-02-23 13:13:45,122 [pN:main,p:74649,tN:MainThread] Retrieved datatype module galaxy.datatypes.tabular:Tabular from the datatype registry for extension linkage_pedin. galaxy.datatypes.registry DEBUG 2024-02-23 13:13:45,122 [pN:main,p:74649,tN:MainThread] Retrieved datatype module galaxy.datatypes.genetics:DataIn from the datatype registry for extension linkage_datain. galaxy.datatypes.registry DEBUG 2024-02-23 13:13:45,122 [pN:main,p:74649,tN:MainThread] Retrieved datatype module galaxy.datatypes.genetics:MarkerMap from the datatype registry for extension linkage_map. galaxy.datatypes.registry DEBUG 2024-02-23 13:13:45,122 [pN:main,p:74649,tN:MainThread] Retrieved datatype module galaxy.datatypes.tabular:Tabular from the datatype registry for extension allegro_ihaplo. galaxy.datatypes.registry DEBUG 2024-02-23 13:13:45,122 [pN:main,p:74649,tN:MainThread] Retrieved datatype module galaxy.datatypes.tabular:Tabular from the datatype registry for extension allegro_descent. galaxy.datatypes.registry DEBUG 2024-02-23 13:13:45,122 [pN:main,p:74649,tN:MainThread] Retrieved datatype module galaxy.datatypes.genetics:AllegroLOD from the datatype registry for extension allegro_fparam. galaxy.datatypes.registry DEBUG 2024-02-23 13:13:45,123 [pN:main,p:74649,tN:MainThread] Retrieved datatype module galaxy.datatypes.genetics:IdeasPre from the datatype registry for extension ideaspre. galaxy.datatypes.registry DEBUG 2024-02-23 13:13:45,123 [pN:main,p:74649,tN:MainThread] Retrieved datatype module galaxy.datatypes.xml:Sbml from the datatype registry for extension sbml. galaxy.datatypes.registry DEBUG 2024-02-23 13:13:45,124 [pN:main,p:74649,tN:MainThread] Retrieved datatype module galaxy.datatypes.spaln:SpalnNuclDb from the datatype registry for extension spalndbnp. galaxy.datatypes.registry DEBUG 2024-02-23 13:13:45,124 [pN:main,p:74649,tN:MainThread] Retrieved datatype module galaxy.datatypes.spaln:SpalnProtDb from the datatype registry for extension spalndba. galaxy.datatypes.registry DEBUG 2024-02-23 13:13:45,125 [pN:main,p:74649,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:RDS from the datatype registry for extension dada2_dada. galaxy.datatypes.registry DEBUG 2024-02-23 13:13:45,125 [pN:main,p:74649,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:RDS from the datatype registry for extension dada2_errorrates. galaxy.datatypes.registry DEBUG 2024-02-23 13:13:45,125 [pN:main,p:74649,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:RDS from the datatype registry for extension dada2_mergepairs. galaxy.datatypes.registry DEBUG 2024-02-23 13:13:45,125 [pN:main,p:74649,tN:MainThread] Retrieved datatype module galaxy.datatypes.tabular:Tabular from the datatype registry for extension dada2_sequencetable. galaxy.datatypes.registry DEBUG 2024-02-23 13:13:45,125 [pN:main,p:74649,tN:MainThread] Retrieved datatype module galaxy.datatypes.tabular:Tabular from the datatype registry for extension dada2_uniques. galaxy.datatypes.registry DEBUG 2024-02-23 13:13:45,125 [pN:main,p:74649,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:RDS from the datatype registry for extension ampvis2. galaxy.datatypes.registry DEBUG 2024-02-23 13:13:45,126 [pN:main,p:74649,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:Binary from the datatype registry for extension ckpt. galaxy.datatypes.registry DEBUG 2024-02-23 13:13:45,126 [pN:main,p:74649,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:Binary from the datatype registry for extension tgz. galaxy.datatypes.registry DEBUG 2024-02-23 13:13:45,128 [pN:main,p:74649,tN:MainThread] Retrieved datatype module galaxy.datatypes.media:Wav from the datatype registry for extension wav. galaxy.datatypes.registry DEBUG 2024-02-23 13:13:45,128 [pN:main,p:74649,tN:MainThread] Retrieved datatype module galaxy.datatypes.media:Mp3 from the datatype registry for extension mp3. galaxy.datatypes.registry DEBUG 2024-02-23 13:13:45,128 [pN:main,p:74649,tN:MainThread] Retrieved datatype module galaxy.datatypes.media:Mkv from the datatype registry for extension mkv. galaxy.datatypes.registry DEBUG 2024-02-23 13:13:45,129 [pN:main,p:74649,tN:MainThread] Retrieved datatype module galaxy.datatypes.media:Mp4 from the datatype registry for extension mp4. galaxy.datatypes.registry DEBUG 2024-02-23 13:13:45,129 [pN:main,p:74649,tN:MainThread] Retrieved datatype module galaxy.datatypes.media:Flv from the datatype registry for extension flv. galaxy.datatypes.registry DEBUG 2024-02-23 13:13:45,129 [pN:main,p:74649,tN:MainThread] Retrieved datatype module galaxy.datatypes.media:Mpg from the datatype registry for extension mpg. galaxy.datatypes.registry DEBUG 2024-02-23 13:13:45,129 [pN:main,p:74649,tN:MainThread] Retrieved datatype module galaxy.datatypes.speech:TextGrid from the datatype registry for extension textgrid. galaxy.datatypes.registry DEBUG 2024-02-23 13:13:45,129 [pN:main,p:74649,tN:MainThread] Retrieved datatype module galaxy.datatypes.speech:BPF from the datatype registry for extension par. galaxy.datatypes.registry DEBUG 2024-02-23 13:13:45,129 [pN:main,p:74649,tN:MainThread] Retrieved datatype module galaxy.datatypes.tabular:Tabular from the datatype registry for extension ffindex. galaxy.datatypes.registry DEBUG 2024-02-23 13:13:45,130 [pN:main,p:74649,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:Data from the datatype registry for extension ffdata. galaxy.datatypes.registry DEBUG 2024-02-23 13:13:45,130 [pN:main,p:74649,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:Pretext from the datatype registry for extension pretext. galaxy.datatypes.registry DEBUG 2024-02-23 13:13:45,130 [pN:main,p:74649,tN:MainThread] Retrieved datatype module galaxy.datatypes.text:Html from the datatype registry for extension immuneml_receptors.html. galaxy.datatypes.registry DEBUG 2024-02-23 13:13:45,130 [pN:main,p:74649,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:HexrdMaterials from the datatype registry for extension hexrd.materials.h5. galaxy.datatypes.registry DEBUG 2024-02-23 13:13:45,130 [pN:main,p:74649,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:Npz from the datatype registry for extension npz. galaxy.datatypes.registry DEBUG 2024-02-23 13:13:45,130 [pN:main,p:74649,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:HexrdImagesNpz from the datatype registry for extension hexrd.images.npz. galaxy.datatypes.registry DEBUG 2024-02-23 13:13:45,130 [pN:main,p:74649,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:HexrdEtaOmeNpz from the datatype registry for extension hexrd.eta_ome.npz. galaxy.datatypes.registry DEBUG 2024-02-23 13:13:45,130 [pN:main,p:74649,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:Npz from the datatype registry for extension hexrd.scored_orientations.npz. galaxy.datatypes.registry DEBUG 2024-02-23 13:13:45,130 [pN:main,p:74649,tN:MainThread] Retrieved datatype module galaxy.datatypes.tabular:Tabular from the datatype registry for extension hexrd.accepted_orientations. galaxy.datatypes.registry DEBUG 2024-02-23 13:13:45,131 [pN:main,p:74649,tN:MainThread] Retrieved datatype module galaxy.datatypes.text:Yaml from the datatype registry for extension hexrd.yml. galaxy.datatypes.registry DEBUG 2024-02-23 13:13:45,131 [pN:main,p:74649,tN:MainThread] Retrieved datatype module galaxy.datatypes.constructive_solid_geometry:NeperTess from the datatype registry for extension neper.tess. galaxy.datatypes.registry DEBUG 2024-02-23 13:13:45,131 [pN:main,p:74649,tN:MainThread] Retrieved datatype module galaxy.datatypes.constructive_solid_geometry:NeperTesr from the datatype registry for extension neper.tesr. galaxy.datatypes.registry DEBUG 2024-02-23 13:13:45,131 [pN:main,p:74649,tN:MainThread] Retrieved datatype module galaxy.datatypes.constructive_solid_geometry:NeperPoints from the datatype registry for extension neper.points. galaxy.datatypes.registry DEBUG 2024-02-23 13:13:45,131 [pN:main,p:74649,tN:MainThread] Retrieved datatype module galaxy.datatypes.constructive_solid_geometry:NeperPointsTabular from the datatype registry for extension neper.points.tsv. galaxy.datatypes.registry DEBUG 2024-02-23 13:13:45,131 [pN:main,p:74649,tN:MainThread] Retrieved datatype module galaxy.datatypes.constructive_solid_geometry:NeperMultiScaleCell from the datatype registry for extension neper.mscell. galaxy.datatypes.registry DEBUG 2024-02-23 13:13:45,131 [pN:main,p:74649,tN:MainThread] Retrieved datatype module galaxy.datatypes.constructive_solid_geometry:GmshMsh from the datatype registry for extension gmsh.msh. galaxy.datatypes.registry DEBUG 2024-02-23 13:13:45,131 [pN:main,p:74649,tN:MainThread] Retrieved datatype module galaxy.datatypes.constructive_solid_geometry:GmshGeo from the datatype registry for extension gmsh.geo. galaxy.datatypes.registry DEBUG 2024-02-23 13:13:45,131 [pN:main,p:74649,tN:MainThread] Retrieved datatype module galaxy.datatypes.constructive_solid_geometry:ZsetGeof from the datatype registry for extension zset.geof. galaxy.datatypes.registry DEBUG 2024-02-23 13:13:45,132 [pN:main,p:74649,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:Binary from the datatype registry for extension stl. galaxy.datatypes.registry DEBUG 2024-02-23 13:13:45,132 [pN:main,p:74649,tN:MainThread] Overriding conflicting datatype with extension 'stl', using datatype from /scratch/rico/galaxy/lib/galaxy/config/sample/datatypes_conf.xml.sample. galaxy.datatypes.registry DEBUG 2024-02-23 13:13:45,132 [pN:main,p:74649,tN:MainThread] Retrieved datatype module galaxy.datatypes.text:Text from the datatype registry for extension pov. galaxy.datatypes.registry DEBUG 2024-02-23 13:13:45,132 [pN:main,p:74649,tN:MainThread] Retrieved datatype module galaxy.datatypes.text:PithyaResult from the datatype registry for extension pithya.result. galaxy.datatypes.registry DEBUG 2024-02-23 13:13:45,132 [pN:main,p:74649,tN:MainThread] Retrieved datatype module galaxy.datatypes.text:PithyaProperty from the datatype registry for extension pithya.property. galaxy.datatypes.registry DEBUG 2024-02-23 13:13:45,132 [pN:main,p:74649,tN:MainThread] Retrieved datatype module galaxy.datatypes.text:PithyaModel from the datatype registry for extension pithya.model. galaxy.datatypes.registry DEBUG 2024-02-23 13:13:45,132 [pN:main,p:74649,tN:MainThread] Retrieved datatype module galaxy.datatypes.text:BCSLts from the datatype registry for extension bcsl.ts. galaxy.datatypes.registry DEBUG 2024-02-23 13:13:45,132 [pN:main,p:74649,tN:MainThread] Retrieved datatype module galaxy.datatypes.text:BCSLmodel from the datatype registry for extension bcsl.model. galaxy.datatypes.registry DEBUG 2024-02-23 13:13:45,132 [pN:main,p:74649,tN:MainThread] Retrieved datatype module galaxy.datatypes.text:StormSample from the datatype registry for extension storm.sample. galaxy.datatypes.registry DEBUG 2024-02-23 13:13:45,132 [pN:main,p:74649,tN:MainThread] Retrieved datatype module galaxy.datatypes.text:StormCheck from the datatype registry for extension storm.check. galaxy.datatypes.registry DEBUG 2024-02-23 13:13:45,133 [pN:main,p:74649,tN:MainThread] Retrieved datatype module galaxy.datatypes.text:CTLresult from the datatype registry for extension ctl.result. galaxy.datatypes.registry DEBUG 2024-02-23 13:13:45,133 [pN:main,p:74649,tN:MainThread] Retrieved datatype module galaxy.datatypes.text:Castep from the datatype registry for extension castep. galaxy.datatypes.registry DEBUG 2024-02-23 13:13:45,133 [pN:main,p:74649,tN:MainThread] Retrieved datatype module galaxy.datatypes.text:Param from the datatype registry for extension param. galaxy.datatypes.registry DEBUG 2024-02-23 13:13:45,133 [pN:main,p:74649,tN:MainThread] Retrieved datatype module galaxy.datatypes.text:FormattedDensity from the datatype registry for extension den_fmt. galaxy.datatypes.registry DEBUG 2024-02-23 13:13:45,133 [pN:main,p:74649,tN:MainThread] Retrieved datatype module galaxy.datatypes.larch:AthenaProject from the datatype registry for extension prj. galaxy.datatypes.registry DEBUG 2024-02-23 13:13:45,133 [pN:main,p:74649,tN:MainThread] Retrieved datatype module galaxy.datatypes.larch:FEFFInput from the datatype registry for extension inp. galaxy.datatypes.registry DEBUG 2024-02-23 13:13:45,134 [pN:main,p:74649,tN:MainThread] Retrieved datatype module galaxy.datatypes.tabular:CSV from the datatype registry for extension sp. galaxy.datatypes.registry DEBUG 2024-02-23 13:13:45,134 [pN:main,p:74649,tN:MainThread] Retrieved datatype module galaxy.datatypes.tabular:CSV from the datatype registry for extension gds. galaxy.datatypes.registry DEBUG 2024-02-23 13:13:45,134 [pN:main,p:74649,tN:MainThread] Retrieved datatype module galaxy.datatypes.tabular:CSV from the datatype registry for extension feff. galaxy.datatypes.registry DEBUG 2024-02-23 13:13:45,134 [pN:main,p:74649,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension feffit. galaxy.datatypes.registry DEBUG 2024-02-23 13:13:45,134 [pN:main,p:74649,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:Binary from the datatype registry for extension bil. galaxy.datatypes.registry DEBUG 2024-02-23 13:13:45,134 [pN:main,p:74649,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension hdr. galaxy.datatypes.registry DEBUG 2024-02-23 13:13:45,135 [pN:main,p:74649,tN:MainThread] Retrieved datatype module galaxy.datatypes.gis:Shapefile from the datatype registry for extension shp. galaxy.datatypes.registry DEBUG 2024-02-23 13:13:45,135 [pN:main,p:74649,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:FITS from the datatype registry for extension fits. galaxy.datatypes.registry DEBUG 2024-02-23 13:13:45,135 [pN:main,p:74649,tN:MainThread] Retrieved datatype module galaxy.datatypes.chain:Chain from the datatype registry for extension chain. galaxy.datatypes.registry DEBUG 2024-02-23 13:13:45,136 [pN:main,p:74649,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.plant_tribes:PlantTribesKsComponents' galaxy.datatypes.registry DEBUG 2024-02-23 13:13:45,136 [pN:main,p:74649,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.plant_tribes:Smat' galaxy.datatypes.registry DEBUG 2024-02-23 13:13:45,136 [pN:main,p:74649,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.mothur:Sabund' galaxy.datatypes.registry DEBUG 2024-02-23 13:13:45,136 [pN:main,p:74649,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.mothur:Otu' galaxy.datatypes.registry DEBUG 2024-02-23 13:13:45,136 [pN:main,p:74649,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.mothur:GroupAbund' galaxy.datatypes.registry DEBUG 2024-02-23 13:13:45,136 [pN:main,p:74649,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.mothur:SecondaryStructureMap' galaxy.datatypes.registry DEBUG 2024-02-23 13:13:45,136 [pN:main,p:74649,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.mothur:LowerTriangleDistanceMatrix' galaxy.datatypes.registry DEBUG 2024-02-23 13:13:45,136 [pN:main,p:74649,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.mothur:SquareDistanceMatrix' galaxy.datatypes.registry DEBUG 2024-02-23 13:13:45,136 [pN:main,p:74649,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.mothur:PairwiseDistanceMatrix' galaxy.datatypes.registry DEBUG 2024-02-23 13:13:45,136 [pN:main,p:74649,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.mothur:Oligos' galaxy.datatypes.registry DEBUG 2024-02-23 13:13:45,136 [pN:main,p:74649,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.mothur:Quantile' galaxy.datatypes.registry DEBUG 2024-02-23 13:13:45,136 [pN:main,p:74649,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.mothur:Frequency' galaxy.datatypes.registry DEBUG 2024-02-23 13:13:45,136 [pN:main,p:74649,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.mothur:LaneMask' galaxy.datatypes.registry DEBUG 2024-02-23 13:13:45,136 [pN:main,p:74649,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.mothur:RefTaxonomy' galaxy.datatypes.registry DEBUG 2024-02-23 13:13:45,136 [pN:main,p:74649,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.mothur:Axes' galaxy.datatypes.registry DEBUG 2024-02-23 13:13:45,136 [pN:main,p:74649,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.constructive_solid_geometry:PlyAscii' galaxy.datatypes.registry DEBUG 2024-02-23 13:13:45,137 [pN:main,p:74649,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.constructive_solid_geometry:PlyBinary' galaxy.datatypes.registry DEBUG 2024-02-23 13:13:45,137 [pN:main,p:74649,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.constructive_solid_geometry:VtkAscii' galaxy.datatypes.registry DEBUG 2024-02-23 13:13:45,137 [pN:main,p:74649,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.constructive_solid_geometry:VtkBinary' galaxy.datatypes.registry DEBUG 2024-02-23 13:13:45,137 [pN:main,p:74649,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.constructive_solid_geometry:NeperTess' galaxy.datatypes.registry DEBUG 2024-02-23 13:13:45,137 [pN:main,p:74649,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.constructive_solid_geometry:NeperTesr' galaxy.datatypes.registry DEBUG 2024-02-23 13:13:45,137 [pN:main,p:74649,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.constructive_solid_geometry:GmshMsh' galaxy.datatypes.registry DEBUG 2024-02-23 13:13:45,137 [pN:main,p:74649,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.goldenpath:GoldenPath' galaxy.datatypes.registry DEBUG 2024-02-23 13:13:45,137 [pN:main,p:74649,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.interval:ScIdx' galaxy.datatypes.registry DEBUG 2024-02-23 13:13:45,137 [pN:main,p:74649,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.tabular:Vcf' galaxy.datatypes.registry DEBUG 2024-02-23 13:13:45,137 [pN:main,p:74649,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.binary:JP2' galaxy.datatypes.registry DEBUG 2024-02-23 13:13:45,137 [pN:main,p:74649,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.binary:TwoBit' galaxy.datatypes.registry DEBUG 2024-02-23 13:13:45,137 [pN:main,p:74649,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.binary:GeminiSQLite' galaxy.datatypes.registry DEBUG 2024-02-23 13:13:45,137 [pN:main,p:74649,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.binary:SQmass' galaxy.datatypes.registry DEBUG 2024-02-23 13:13:45,137 [pN:main,p:74649,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.binary:MzSQlite' galaxy.datatypes.registry DEBUG 2024-02-23 13:13:45,137 [pN:main,p:74649,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.binary:OSW' galaxy.datatypes.registry DEBUG 2024-02-23 13:13:45,137 [pN:main,p:74649,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.binary:PQP' galaxy.datatypes.registry DEBUG 2024-02-23 13:13:45,137 [pN:main,p:74649,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.binary:IdpDB' galaxy.datatypes.registry DEBUG 2024-02-23 13:13:45,138 [pN:main,p:74649,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.binary:ElibSQlite' galaxy.datatypes.registry DEBUG 2024-02-23 13:13:45,138 [pN:main,p:74649,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.binary:DlibSQlite' galaxy.datatypes.registry DEBUG 2024-02-23 13:13:45,138 [pN:main,p:74649,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.binary:BlibSQlite' galaxy.datatypes.registry DEBUG 2024-02-23 13:13:45,138 [pN:main,p:74649,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.binary:ChiraSQLite' galaxy.datatypes.registry DEBUG 2024-02-23 13:13:45,138 [pN:main,p:74649,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.binary:CuffDiffSQlite' galaxy.datatypes.registry DEBUG 2024-02-23 13:13:45,138 [pN:main,p:74649,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.binary:GAFASQLite' galaxy.datatypes.registry DEBUG 2024-02-23 13:13:45,138 [pN:main,p:74649,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.binary:NcbiTaxonomySQlite' galaxy.datatypes.registry DEBUG 2024-02-23 13:13:45,138 [pN:main,p:74649,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.binary:SQlite' galaxy.datatypes.registry DEBUG 2024-02-23 13:13:45,138 [pN:main,p:74649,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.binary:H5MLM' galaxy.datatypes.registry DEBUG 2024-02-23 13:13:45,138 [pN:main,p:74649,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.binary:Cool' galaxy.datatypes.registry DEBUG 2024-02-23 13:13:45,138 [pN:main,p:74649,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.binary:MCool' galaxy.datatypes.registry DEBUG 2024-02-23 13:13:45,138 [pN:main,p:74649,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.binary:Loom' galaxy.datatypes.registry DEBUG 2024-02-23 13:13:45,138 [pN:main,p:74649,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.binary:Anndata' galaxy.datatypes.registry DEBUG 2024-02-23 13:13:45,138 [pN:main,p:74649,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.binary:Biom2' galaxy.datatypes.registry DEBUG 2024-02-23 13:13:45,138 [pN:main,p:74649,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.binary:HexrdMaterials' galaxy.datatypes.registry DEBUG 2024-02-23 13:13:45,138 [pN:main,p:74649,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.binary:H5' galaxy.datatypes.registry DEBUG 2024-02-23 13:13:45,138 [pN:main,p:74649,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.binary:Grib' galaxy.datatypes.registry DEBUG 2024-02-23 13:13:45,139 [pN:main,p:74649,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.binary:HexrdImagesNpz' galaxy.datatypes.registry DEBUG 2024-02-23 13:13:45,139 [pN:main,p:74649,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.binary:HexrdEtaOmeNpz' galaxy.datatypes.registry DEBUG 2024-02-23 13:13:45,139 [pN:main,p:74649,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.binary:Npz' galaxy.datatypes.registry DEBUG 2024-02-23 13:13:45,139 [pN:main,p:74649,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.binary:Bam' galaxy.datatypes.registry DEBUG 2024-02-23 13:13:45,139 [pN:main,p:74649,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.binary:BamQuerynameSorted' galaxy.datatypes.registry DEBUG 2024-02-23 13:13:45,139 [pN:main,p:74649,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.binary:BamNative' galaxy.datatypes.registry DEBUG 2024-02-23 13:13:45,139 [pN:main,p:74649,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.binary:CRAM' galaxy.datatypes.registry DEBUG 2024-02-23 13:13:45,139 [pN:main,p:74649,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.binary:Sff' galaxy.datatypes.registry DEBUG 2024-02-23 13:13:45,139 [pN:main,p:74649,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.binary:Sra' galaxy.datatypes.registry DEBUG 2024-02-23 13:13:45,139 [pN:main,p:74649,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.binary:NetCDF' galaxy.datatypes.registry DEBUG 2024-02-23 13:13:45,139 [pN:main,p:74649,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.binary:DAA' galaxy.datatypes.registry DEBUG 2024-02-23 13:13:45,139 [pN:main,p:74649,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.binary:RMA6' galaxy.datatypes.registry DEBUG 2024-02-23 13:13:45,139 [pN:main,p:74649,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.binary:DMND' galaxy.datatypes.registry DEBUG 2024-02-23 13:13:45,139 [pN:main,p:74649,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.binary:Parquet' galaxy.datatypes.registry DEBUG 2024-02-23 13:13:45,139 [pN:main,p:74649,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.binary:BafTar' galaxy.datatypes.registry DEBUG 2024-02-23 13:13:45,139 [pN:main,p:74649,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.binary:TdfTar' galaxy.datatypes.registry DEBUG 2024-02-23 13:13:45,139 [pN:main,p:74649,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.binary:MassHunterTar' galaxy.datatypes.registry DEBUG 2024-02-23 13:13:45,140 [pN:main,p:74649,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.binary:MassLynxTar' galaxy.datatypes.registry DEBUG 2024-02-23 13:13:45,140 [pN:main,p:74649,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.binary:YepTar' galaxy.datatypes.registry DEBUG 2024-02-23 13:13:45,140 [pN:main,p:74649,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.binary:WiffTar' galaxy.datatypes.registry DEBUG 2024-02-23 13:13:45,140 [pN:main,p:74649,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.binary:Fast5ArchiveGz' galaxy.datatypes.registry DEBUG 2024-02-23 13:13:45,140 [pN:main,p:74649,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.binary:Fast5ArchiveBz2' galaxy.datatypes.registry DEBUG 2024-02-23 13:13:45,140 [pN:main,p:74649,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.binary:Fast5Archive' galaxy.datatypes.registry DEBUG 2024-02-23 13:13:45,140 [pN:main,p:74649,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.binary:Meryldb' galaxy.datatypes.registry DEBUG 2024-02-23 13:13:45,140 [pN:main,p:74649,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.binary:Bref3' galaxy.datatypes.registry DEBUG 2024-02-23 13:13:45,140 [pN:main,p:74649,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.binary:PostgresqlArchive' galaxy.datatypes.registry DEBUG 2024-02-23 13:13:45,140 [pN:main,p:74649,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.binary:ICM' galaxy.datatypes.registry DEBUG 2024-02-23 13:13:45,140 [pN:main,p:74649,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.binary:Idat' galaxy.datatypes.registry DEBUG 2024-02-23 13:13:45,140 [pN:main,p:74649,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.binary:Trr' galaxy.datatypes.registry DEBUG 2024-02-23 13:13:45,140 [pN:main,p:74649,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.binary:Dcd' galaxy.datatypes.registry DEBUG 2024-02-23 13:13:45,140 [pN:main,p:74649,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.binary:Xtc' galaxy.datatypes.registry DEBUG 2024-02-23 13:13:45,140 [pN:main,p:74649,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.binary:Cpt' galaxy.datatypes.registry DEBUG 2024-02-23 13:13:45,140 [pN:main,p:74649,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.binary:Edr' galaxy.datatypes.registry DEBUG 2024-02-23 13:13:45,141 [pN:main,p:74649,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.binary:Vel' galaxy.datatypes.registry DEBUG 2024-02-23 13:13:45,141 [pN:main,p:74649,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.binary:Xlsx' galaxy.datatypes.registry DEBUG 2024-02-23 13:13:45,141 [pN:main,p:74649,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.qiime2:QIIME2Metadata' galaxy.datatypes.registry DEBUG 2024-02-23 13:13:45,141 [pN:main,p:74649,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.qiime2:QIIME2Artifact' galaxy.datatypes.registry DEBUG 2024-02-23 13:13:45,141 [pN:main,p:74649,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.qiime2:QIIME2Visualization' galaxy.datatypes.registry DEBUG 2024-02-23 13:13:45,141 [pN:main,p:74649,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.binary:CompressedZipArchive' galaxy.datatypes.registry DEBUG 2024-02-23 13:13:45,141 [pN:main,p:74649,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.binary:Pretext' galaxy.datatypes.registry DEBUG 2024-02-23 13:13:45,141 [pN:main,p:74649,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.annotation:Augustus' galaxy.datatypes.registry DEBUG 2024-02-23 13:13:45,141 [pN:main,p:74649,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.xml:Owl' galaxy.datatypes.registry DEBUG 2024-02-23 13:13:45,141 [pN:main,p:74649,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.chain:Chain' galaxy.datatypes.registry DEBUG 2024-02-23 13:13:45,141 [pN:main,p:74649,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.triples:Rdf' galaxy.datatypes.registry DEBUG 2024-02-23 13:13:45,141 [pN:main,p:74649,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.blast:BlastXml' galaxy.datatypes.registry DEBUG 2024-02-23 13:13:45,141 [pN:main,p:74649,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.images:Gifti' galaxy.datatypes.registry DEBUG 2024-02-23 13:13:45,141 [pN:main,p:74649,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.xml:Phyloxml' galaxy.datatypes.registry DEBUG 2024-02-23 13:13:45,141 [pN:main,p:74649,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.xml:Dzi' galaxy.datatypes.registry DEBUG 2024-02-23 13:13:45,142 [pN:main,p:74649,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.xml:Sbml' galaxy.datatypes.registry DEBUG 2024-02-23 13:13:45,142 [pN:main,p:74649,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.proteomics:Dta2d' galaxy.datatypes.registry DEBUG 2024-02-23 13:13:45,142 [pN:main,p:74649,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.proteomics:Edta' galaxy.datatypes.registry DEBUG 2024-02-23 13:13:45,142 [pN:main,p:74649,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.proteomics:ConsensusXML' galaxy.datatypes.registry DEBUG 2024-02-23 13:13:45,142 [pN:main,p:74649,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.proteomics:IdXML' galaxy.datatypes.registry DEBUG 2024-02-23 13:13:45,142 [pN:main,p:74649,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.proteomics:FeatureXML' galaxy.datatypes.registry DEBUG 2024-02-23 13:13:45,142 [pN:main,p:74649,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.proteomics:MascotXML' galaxy.datatypes.registry DEBUG 2024-02-23 13:13:45,142 [pN:main,p:74649,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.proteomics:Mgf' galaxy.datatypes.registry DEBUG 2024-02-23 13:13:45,142 [pN:main,p:74649,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.proteomics:Ms2' galaxy.datatypes.registry DEBUG 2024-02-23 13:13:45,142 [pN:main,p:74649,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.proteomics:Msp' galaxy.datatypes.registry DEBUG 2024-02-23 13:13:45,142 [pN:main,p:74649,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.proteomics:MzData' galaxy.datatypes.registry DEBUG 2024-02-23 13:13:45,142 [pN:main,p:74649,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.proteomics:MzIdentML' galaxy.datatypes.registry DEBUG 2024-02-23 13:13:45,142 [pN:main,p:74649,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.proteomics:MzML' galaxy.datatypes.registry DEBUG 2024-02-23 13:13:45,142 [pN:main,p:74649,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.proteomics:MzQuantML' galaxy.datatypes.registry DEBUG 2024-02-23 13:13:45,142 [pN:main,p:74649,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.proteomics:MzTab' galaxy.datatypes.registry DEBUG 2024-02-23 13:13:45,142 [pN:main,p:74649,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.proteomics:MzTab2' galaxy.datatypes.registry DEBUG 2024-02-23 13:13:45,143 [pN:main,p:74649,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.proteomics:ParamXml' galaxy.datatypes.registry DEBUG 2024-02-23 13:13:45,143 [pN:main,p:74649,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.proteomics:MzXML' galaxy.datatypes.registry DEBUG 2024-02-23 13:13:45,143 [pN:main,p:74649,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.proteomics:NmrML' galaxy.datatypes.registry DEBUG 2024-02-23 13:13:45,143 [pN:main,p:74649,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.proteomics:Kroenik' galaxy.datatypes.registry DEBUG 2024-02-23 13:13:45,143 [pN:main,p:74649,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.proteomics:PepList' galaxy.datatypes.registry DEBUG 2024-02-23 13:13:45,143 [pN:main,p:74649,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.proteomics:PSMS' galaxy.datatypes.registry DEBUG 2024-02-23 13:13:45,143 [pN:main,p:74649,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.proteomics:PepXml' galaxy.datatypes.registry DEBUG 2024-02-23 13:13:45,143 [pN:main,p:74649,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.proteomics:ProtXML' galaxy.datatypes.registry DEBUG 2024-02-23 13:13:45,143 [pN:main,p:74649,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.proteomics:SPLib' galaxy.datatypes.registry DEBUG 2024-02-23 13:13:45,143 [pN:main,p:74649,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.proteomics:TandemXML' galaxy.datatypes.registry DEBUG 2024-02-23 13:13:45,143 [pN:main,p:74649,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.proteomics:ThermoRAW' galaxy.datatypes.registry DEBUG 2024-02-23 13:13:45,143 [pN:main,p:74649,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.proteomics:TraML' galaxy.datatypes.registry DEBUG 2024-02-23 13:13:45,143 [pN:main,p:74649,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.proteomics:TrafoXML' galaxy.datatypes.registry DEBUG 2024-02-23 13:13:45,143 [pN:main,p:74649,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.proteomics:UniProtXML' galaxy.datatypes.registry DEBUG 2024-02-23 13:13:45,143 [pN:main,p:74649,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.proteomics:XquestXML' galaxy.datatypes.registry DEBUG 2024-02-23 13:13:45,144 [pN:main,p:74649,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.proteomics:XquestSpecXML' galaxy.datatypes.registry DEBUG 2024-02-23 13:13:45,144 [pN:main,p:74649,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.proteomics:QCML' galaxy.datatypes.registry DEBUG 2024-02-23 13:13:45,144 [pN:main,p:74649,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.proteomics:Wiff' galaxy.datatypes.registry DEBUG 2024-02-23 13:13:45,144 [pN:main,p:74649,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.proteomics:PEFF' galaxy.datatypes.registry DEBUG 2024-02-23 13:13:45,144 [pN:main,p:74649,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.molecules:CML' galaxy.datatypes.registry DEBUG 2024-02-23 13:13:45,144 [pN:main,p:74649,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.xml:GenericXml' galaxy.datatypes.registry DEBUG 2024-02-23 13:13:45,144 [pN:main,p:74649,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.triples:HDT' galaxy.datatypes.registry DEBUG 2024-02-23 13:13:45,144 [pN:main,p:74649,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.triples:Turtle' galaxy.datatypes.registry DEBUG 2024-02-23 13:13:45,144 [pN:main,p:74649,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.triples:NTriples' galaxy.datatypes.registry DEBUG 2024-02-23 13:13:45,144 [pN:main,p:74649,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.triples:Jsonld' galaxy.datatypes.registry DEBUG 2024-02-23 13:13:45,144 [pN:main,p:74649,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.sequence:Maf' galaxy.datatypes.registry DEBUG 2024-02-23 13:13:45,144 [pN:main,p:74649,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.sequence:Lav' galaxy.datatypes.registry DEBUG 2024-02-23 13:13:45,144 [pN:main,p:74649,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.sequence:MemePsp' galaxy.datatypes.registry DEBUG 2024-02-23 13:13:45,144 [pN:main,p:74649,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.sequence:Fastg' galaxy.datatypes.registry DEBUG 2024-02-23 13:13:45,145 [pN:main,p:74649,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.sequence:csFasta' galaxy.datatypes.registry DEBUG 2024-02-23 13:13:45,145 [pN:main,p:74649,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.qualityscore:QualityScoreSOLiD' galaxy.datatypes.registry DEBUG 2024-02-23 13:13:45,145 [pN:main,p:74649,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.qualityscore:QualityScore454' galaxy.datatypes.registry DEBUG 2024-02-23 13:13:45,145 [pN:main,p:74649,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.molecules:SDF' galaxy.datatypes.registry DEBUG 2024-02-23 13:13:45,145 [pN:main,p:74649,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.molecules:PDB' galaxy.datatypes.registry DEBUG 2024-02-23 13:13:45,145 [pN:main,p:74649,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.molecules:Cell' galaxy.datatypes.registry DEBUG 2024-02-23 13:13:45,145 [pN:main,p:74649,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.molecules:CIF' galaxy.datatypes.registry DEBUG 2024-02-23 13:13:45,145 [pN:main,p:74649,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.molecules:ExtendedXYZ' galaxy.datatypes.registry DEBUG 2024-02-23 13:13:45,145 [pN:main,p:74649,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.molecules:XYZ' galaxy.datatypes.registry DEBUG 2024-02-23 13:13:45,145 [pN:main,p:74649,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.molecules:MOL2' galaxy.datatypes.registry DEBUG 2024-02-23 13:13:45,145 [pN:main,p:74649,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.molecules:InChI' galaxy.datatypes.registry DEBUG 2024-02-23 13:13:45,145 [pN:main,p:74649,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.molecules:FPS' galaxy.datatypes.registry DEBUG 2024-02-23 13:13:45,145 [pN:main,p:74649,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.molecules:PQR' galaxy.datatypes.registry DEBUG 2024-02-23 13:13:45,145 [pN:main,p:74649,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.molecules:GRO' galaxy.datatypes.registry DEBUG 2024-02-23 13:13:45,146 [pN:main,p:74649,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.phylip:Phylip' galaxy.datatypes.registry DEBUG 2024-02-23 13:13:45,146 [pN:main,p:74649,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.sequence:Fasta' galaxy.datatypes.registry DEBUG 2024-02-23 13:13:45,146 [pN:main,p:74649,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.sequence:FastqCSSanger' galaxy.datatypes.registry DEBUG 2024-02-23 13:13:45,146 [pN:main,p:74649,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.sequence:FastqSanger' galaxy.datatypes.registry DEBUG 2024-02-23 13:13:45,146 [pN:main,p:74649,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.sequence:Fastq' galaxy.datatypes.registry DEBUG 2024-02-23 13:13:45,146 [pN:main,p:74649,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.interval:Wiggle' galaxy.datatypes.registry DEBUG 2024-02-23 13:13:45,146 [pN:main,p:74649,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.text:Html' galaxy.datatypes.registry DEBUG 2024-02-23 13:13:45,146 [pN:main,p:74649,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.images:Pdf' galaxy.datatypes.registry DEBUG 2024-02-23 13:13:45,146 [pN:main,p:74649,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.sequence:Axt' galaxy.datatypes.registry DEBUG 2024-02-23 13:13:45,146 [pN:main,p:74649,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.sequence:Genbank' galaxy.datatypes.registry DEBUG 2024-02-23 13:13:45,146 [pN:main,p:74649,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.interval:Bed' galaxy.datatypes.registry DEBUG 2024-02-23 13:13:45,146 [pN:main,p:74649,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.interval:CustomTrack' galaxy.datatypes.registry DEBUG 2024-02-23 13:13:45,146 [pN:main,p:74649,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.interval:Gtf' galaxy.datatypes.registry DEBUG 2024-02-23 13:13:45,147 [pN:main,p:74649,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.interval:Gff' galaxy.datatypes.registry DEBUG 2024-02-23 13:13:45,147 [pN:main,p:74649,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.interval:Gff3' galaxy.datatypes.registry DEBUG 2024-02-23 13:13:45,147 [pN:main,p:74649,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.tabular:Pileup' galaxy.datatypes.registry DEBUG 2024-02-23 13:13:45,147 [pN:main,p:74649,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.tabular:Psl' galaxy.datatypes.registry DEBUG 2024-02-23 13:13:45,147 [pN:main,p:74649,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.text:Paf' galaxy.datatypes.registry DEBUG 2024-02-23 13:13:45,147 [pN:main,p:74649,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.interval:Interval' galaxy.datatypes.registry DEBUG 2024-02-23 13:13:45,147 [pN:main,p:74649,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.tabular:Sam' galaxy.datatypes.registry DEBUG 2024-02-23 13:13:45,147 [pN:main,p:74649,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.data:Newick' galaxy.datatypes.registry DEBUG 2024-02-23 13:13:45,147 [pN:main,p:74649,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.data:Nexus' galaxy.datatypes.registry DEBUG 2024-02-23 13:13:45,147 [pN:main,p:74649,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.text:IQTree' galaxy.datatypes.registry DEBUG 2024-02-23 13:13:45,147 [pN:main,p:74649,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.text:Obo' galaxy.datatypes.registry DEBUG 2024-02-23 13:13:45,147 [pN:main,p:74649,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.text:Arff' galaxy.datatypes.registry DEBUG 2024-02-23 13:13:45,147 [pN:main,p:74649,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.text:Ipynb' galaxy.datatypes.registry DEBUG 2024-02-23 13:13:45,148 [pN:main,p:74649,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.text:Biom1' galaxy.datatypes.registry DEBUG 2024-02-23 13:13:45,148 [pN:main,p:74649,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.text:ImgtJson' galaxy.datatypes.registry DEBUG 2024-02-23 13:13:45,148 [pN:main,p:74649,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.text:GeoJson' galaxy.datatypes.registry DEBUG 2024-02-23 13:13:45,148 [pN:main,p:74649,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.text:PithyaResult' galaxy.datatypes.registry DEBUG 2024-02-23 13:13:45,148 [pN:main,p:74649,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.text:BCSLts' galaxy.datatypes.registry DEBUG 2024-02-23 13:13:45,148 [pN:main,p:74649,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.text:Json' galaxy.datatypes.registry DEBUG 2024-02-23 13:13:45,148 [pN:main,p:74649,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.genetics:GenotypeMatrix' galaxy.datatypes.registry DEBUG 2024-02-23 13:13:45,148 [pN:main,p:74649,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.genetics:DataIn' galaxy.datatypes.registry DEBUG 2024-02-23 13:13:45,148 [pN:main,p:74649,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.genetics:MarkerMap' galaxy.datatypes.registry DEBUG 2024-02-23 13:13:45,148 [pN:main,p:74649,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.genetics:AllegroLOD' galaxy.datatypes.registry DEBUG 2024-02-23 13:13:45,148 [pN:main,p:74649,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.sequence:RNADotPlotMatrix' galaxy.datatypes.registry DEBUG 2024-02-23 13:13:45,148 [pN:main,p:74649,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.sequence:DotBracket' galaxy.datatypes.registry DEBUG 2024-02-23 13:13:45,148 [pN:main,p:74649,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.tabular:CMAP' galaxy.datatypes.registry DEBUG 2024-02-23 13:13:45,149 [pN:main,p:74649,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.tabular:ConnectivityTable' galaxy.datatypes.registry DEBUG 2024-02-23 13:13:45,149 [pN:main,p:74649,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.tabular:CSV' galaxy.datatypes.registry DEBUG 2024-02-23 13:13:45,149 [pN:main,p:74649,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.metacyto:mSummary' galaxy.datatypes.registry DEBUG 2024-02-23 13:13:45,149 [pN:main,p:74649,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.metacyto:mStats' galaxy.datatypes.registry DEBUG 2024-02-23 13:13:45,149 [pN:main,p:74649,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.tabular:TSV' galaxy.datatypes.registry DEBUG 2024-02-23 13:13:45,149 [pN:main,p:74649,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.tabular:MatrixMarket' galaxy.datatypes.registry DEBUG 2024-02-23 13:13:45,149 [pN:main,p:74649,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.msa:Hmmer2' galaxy.datatypes.registry DEBUG 2024-02-23 13:13:45,149 [pN:main,p:74649,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.msa:Hmmer3' galaxy.datatypes.registry DEBUG 2024-02-23 13:13:45,149 [pN:main,p:74649,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.msa:Stockholm_1_0' galaxy.datatypes.registry DEBUG 2024-02-23 13:13:45,149 [pN:main,p:74649,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.msa:MauveXmfa' galaxy.datatypes.registry DEBUG 2024-02-23 13:13:45,149 [pN:main,p:74649,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.msa:InfernalCM' galaxy.datatypes.registry DEBUG 2024-02-23 13:13:45,149 [pN:main,p:74649,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.annotation:SnapHmm' galaxy.datatypes.registry DEBUG 2024-02-23 13:13:45,150 [pN:main,p:74649,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.microarrays:Cel' galaxy.datatypes.registry DEBUG 2024-02-23 13:13:45,150 [pN:main,p:74649,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.microarrays:Gpr' galaxy.datatypes.registry DEBUG 2024-02-23 13:13:45,150 [pN:main,p:74649,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.microarrays:Gal' galaxy.datatypes.registry DEBUG 2024-02-23 13:13:45,150 [pN:main,p:74649,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.binary:RData' galaxy.datatypes.registry DEBUG 2024-02-23 13:13:45,150 [pN:main,p:74649,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.binary:RDS' galaxy.datatypes.registry DEBUG 2024-02-23 13:13:45,150 [pN:main,p:74649,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.images:Mrc2014' galaxy.datatypes.registry DEBUG 2024-02-23 13:13:45,150 [pN:main,p:74649,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.images:Jpg' galaxy.datatypes.registry DEBUG 2024-02-23 13:13:45,150 [pN:main,p:74649,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.images:Png' galaxy.datatypes.registry DEBUG 2024-02-23 13:13:45,150 [pN:main,p:74649,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.images:OMETiff' galaxy.datatypes.registry DEBUG 2024-02-23 13:13:45,150 [pN:main,p:74649,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.images:Tiff' galaxy.datatypes.registry DEBUG 2024-02-23 13:13:45,150 [pN:main,p:74649,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.images:Bmp' galaxy.datatypes.registry DEBUG 2024-02-23 13:13:45,150 [pN:main,p:74649,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.images:Gif' galaxy.datatypes.registry DEBUG 2024-02-23 13:13:45,151 [pN:main,p:74649,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.images:Im' galaxy.datatypes.registry DEBUG 2024-02-23 13:13:45,151 [pN:main,p:74649,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.images:Pcd' galaxy.datatypes.registry DEBUG 2024-02-23 13:13:45,151 [pN:main,p:74649,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.images:Pcx' galaxy.datatypes.registry DEBUG 2024-02-23 13:13:45,151 [pN:main,p:74649,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.images:Ppm' galaxy.datatypes.registry DEBUG 2024-02-23 13:13:45,151 [pN:main,p:74649,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.images:Psd' galaxy.datatypes.registry DEBUG 2024-02-23 13:13:45,151 [pN:main,p:74649,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.images:Xbm' galaxy.datatypes.registry DEBUG 2024-02-23 13:13:45,151 [pN:main,p:74649,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.images:Rgb' galaxy.datatypes.registry DEBUG 2024-02-23 13:13:45,151 [pN:main,p:74649,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.images:Pbm' galaxy.datatypes.registry DEBUG 2024-02-23 13:13:45,151 [pN:main,p:74649,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.images:Pgm' galaxy.datatypes.registry DEBUG 2024-02-23 13:13:45,151 [pN:main,p:74649,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.images:Xpm' galaxy.datatypes.registry DEBUG 2024-02-23 13:13:45,151 [pN:main,p:74649,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.images:Eps' galaxy.datatypes.registry DEBUG 2024-02-23 13:13:45,151 [pN:main,p:74649,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.images:Rast' galaxy.datatypes.registry DEBUG 2024-02-23 13:13:45,152 [pN:main,p:74649,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.images:Tck' galaxy.datatypes.registry DEBUG 2024-02-23 13:13:45,152 [pN:main,p:74649,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.images:Trk' galaxy.datatypes.registry DEBUG 2024-02-23 13:13:45,152 [pN:main,p:74649,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.images:Nifti1' galaxy.datatypes.registry DEBUG 2024-02-23 13:13:45,152 [pN:main,p:74649,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.images:Nifti2' galaxy.datatypes.registry DEBUG 2024-02-23 13:13:45,152 [pN:main,p:74649,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.images:Star' galaxy.datatypes.registry DEBUG 2024-02-23 13:13:45,152 [pN:main,p:74649,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.media:Wav' galaxy.datatypes.registry DEBUG 2024-02-23 13:13:45,152 [pN:main,p:74649,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.media:Mkv' galaxy.datatypes.registry DEBUG 2024-02-23 13:13:45,152 [pN:main,p:74649,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.media:Mp3' galaxy.datatypes.registry DEBUG 2024-02-23 13:13:45,152 [pN:main,p:74649,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.media:Mp4' galaxy.datatypes.registry DEBUG 2024-02-23 13:13:45,152 [pN:main,p:74649,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.media:Flv' galaxy.datatypes.registry DEBUG 2024-02-23 13:13:45,152 [pN:main,p:74649,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.media:Mpg' galaxy.datatypes.registry DEBUG 2024-02-23 13:13:45,152 [pN:main,p:74649,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.speech:TextGrid' galaxy.datatypes.registry DEBUG 2024-02-23 13:13:45,152 [pN:main,p:74649,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.speech:BPF' galaxy.datatypes.registry DEBUG 2024-02-23 13:13:45,153 [pN:main,p:74649,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.larch:FEFFInput' galaxy.datatypes.registry DEBUG 2024-02-23 13:13:45,153 [pN:main,p:74649,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.larch:AthenaProject' galaxy.datatypes.registry DEBUG 2024-02-23 13:13:45,153 [pN:main,p:74649,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.text:Castep' galaxy.datatypes.registry DEBUG 2024-02-23 13:13:45,153 [pN:main,p:74649,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.text:CTLresult' galaxy.datatypes.registry DEBUG 2024-02-23 13:13:45,153 [pN:main,p:74649,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.text:FormattedDensity' galaxy.datatypes.registry DEBUG 2024-02-23 13:13:45,153 [pN:main,p:74649,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.text:Param' galaxy.datatypes.registry DEBUG 2024-02-23 13:13:45,153 [pN:main,p:74649,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.text:Yaml' galaxy.datatypes.registry DEBUG 2024-02-23 13:13:45,153 [pN:main,p:74649,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.binary:OxliCountGraph' galaxy.datatypes.registry DEBUG 2024-02-23 13:13:45,153 [pN:main,p:74649,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.binary:OxliNodeGraph' galaxy.datatypes.registry DEBUG 2024-02-23 13:13:45,153 [pN:main,p:74649,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.binary:OxliTagSet' galaxy.datatypes.registry DEBUG 2024-02-23 13:13:45,153 [pN:main,p:74649,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.binary:OxliStopTags' galaxy.datatypes.registry DEBUG 2024-02-23 13:13:45,154 [pN:main,p:74649,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.binary:OxliSubset' galaxy.datatypes.registry DEBUG 2024-02-23 13:13:45,154 [pN:main,p:74649,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.binary:OxliGraphLabels' galaxy.datatypes.registry DEBUG 2024-02-23 13:13:45,154 [pN:main,p:74649,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.binary:FITS' galaxy.datatypes.registry DEBUG 2024-02-23 13:13:45,154 [pN:main,p:74649,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.neo4j:Neo4jDBzip' galaxy.datatypes.registry DEBUG 2024-02-23 13:13:45,154 [pN:main,p:74649,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.text:PithyaProperty' galaxy.datatypes.registry DEBUG 2024-02-23 13:13:45,154 [pN:main,p:74649,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.text:PithyaModel' galaxy.datatypes.registry DEBUG 2024-02-23 13:13:45,154 [pN:main,p:74649,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.text:BCSLmodel' galaxy.datatypes.registry DEBUG 2024-02-23 13:13:45,154 [pN:main,p:74649,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.text:StormSample' galaxy.datatypes.registry DEBUG 2024-02-23 13:13:45,154 [pN:main,p:74649,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.text:StormCheck' galaxy.datatypes.registry DEBUG 2024-02-23 13:13:45,159 [pN:main,p:74649,tN:MainThread] Build site file [tool-data/shared/ucsc/ucsc_build_sites.txt] not found using sample [tool-data/shared/ucsc/ucsc_build_sites.txt.sample]. galaxy.datatypes.registry DEBUG 2024-02-23 13:13:45,159 [pN:main,p:74649,tN:MainThread] Loaded build site 'ucsc': tool-data/shared/ucsc/ucsc_build_sites.txt.sample with display sites: ['main', 'test', 'archaea', 'ucla'] galaxy.datatypes.registry DEBUG 2024-02-23 13:13:45,159 [pN:main,p:74649,tN:MainThread] Loaded build site 'gbrowse': tool-data/shared/gbrowse/gbrowse_build_sites.txt with display sites: ['modencode', 'sgd_yeast', 'tair', 'wormbase', 'wormbase_ws120', 'wormbase_ws140', 'wormbase_ws170', 'wormbase_ws180', 'wormbase_ws190', 'wormbase_ws200', 'wormbase_ws204', 'wormbase_ws210', 'wormbase_ws220', 'wormbase_ws225'] galaxy.datatypes.registry DEBUG 2024-02-23 13:13:45,159 [pN:main,p:74649,tN:MainThread] Loaded build site 'ensembl': tool-data/shared/ensembl/ensembl_sites.txt galaxy.datatypes.registry DEBUG 2024-02-23 13:13:45,159 [pN:main,p:74649,tN:MainThread] Loaded build site 'ensembl_data_url': tool-data/shared/ensembl/ensembl_sites_data_URL.txt galaxy.datatypes.registry DEBUG 2024-02-23 13:13:45,159 [pN:main,p:74649,tN:MainThread] Build site file [tool-data/shared/igv/igv_build_sites.txt] not found using sample [tool-data/shared/igv/igv_build_sites.txt.sample]. galaxy.datatypes.registry DEBUG 2024-02-23 13:13:45,159 [pN:main,p:74649,tN:MainThread] Loaded build site 'igv': tool-data/shared/igv/igv_build_sites.txt.sample galaxy.datatypes.registry DEBUG 2024-02-23 13:13:45,159 [pN:main,p:74649,tN:MainThread] Build site file [tool-data/shared/rviewer/rviewer_build_sites.txt] not found using sample [tool-data/shared/rviewer/rviewer_build_sites.txt.sample]. galaxy.datatypes.registry DEBUG 2024-02-23 13:13:45,159 [pN:main,p:74649,tN:MainThread] Loaded build site 'rviewer': tool-data/shared/rviewer/rviewer_build_sites.txt.sample galaxy.util.tool_shed.tool_shed_registry DEBUG 2024-02-23 13:13:45,160 [pN:main,p:74649,tN:MainThread] Loading references to tool sheds from /tmp/tmpj6ure7bs/tool_sheds_conf.xml galaxy.util.tool_shed.tool_shed_registry DEBUG 2024-02-23 13:13:45,160 [pN:main,p:74649,tN:MainThread] Loaded reference to tool shed: Target Shed galaxy.queue_worker INFO 2024-02-23 13:13:45,161 [pN:main,p:74649,tN:MainThread] Initializing main Galaxy Queue Worker on sqlalchemy+sqlite:////tmp/tmpj6ure7bs/galaxy.sqlite?isolation_level=IMMEDIATE galaxy.tool_util.data WARNING 2024-02-23 13:13:45,173 [pN:main,p:74649,tN:MainThread] Cannot find index file '/scratch/rico/galaxytools/tools/ncbi_fcs_adaptor/test-data/ncbi_fcs_adaptor_config.tsv' for tool data table 'ncbi_fcs_adaptor_config' galaxy.tool_util.data DEBUG 2024-02-23 13:13:45,173 [pN:main,p:74649,tN:MainThread] Loaded tool data table 'ncbi_fcs_adaptor_config' from file '/scratch/rico/galaxytools/tools/ncbi_fcs_adaptor/tool_data_table_conf.xml.test' galaxy.tool_util.data WARNING 2024-02-23 13:13:45,173 [pN:main,p:74649,tN:MainThread] Cannot find index file '/scratch/rico/galaxytools/tools/ncbi_fcs_adaptor/test-data/ncbi_fcs_adaptor_databases.loc' for tool data table 'ncbi_fcs_adaptor_databases' galaxy.tool_util.data DEBUG 2024-02-23 13:13:45,173 [pN:main,p:74649,tN:MainThread] Loaded tool data table 'ncbi_fcs_adaptor_databases' from file '/scratch/rico/galaxytools/tools/ncbi_fcs_adaptor/tool_data_table_conf.xml.test' galaxy.tool_util.data WARNING 2024-02-23 13:13:45,173 [pN:main,p:74649,tN:MainThread] Cannot find index file '/scratch/rico/galaxytools/tools/ncbi_fcs_adaptor/test-data/ncbi_fcs_adaptor_divisions.tsv' for tool data table 'ncbi_fcs_adaptor_divisions' galaxy.tool_util.data DEBUG 2024-02-23 13:13:45,173 [pN:main,p:74649,tN:MainThread] Loaded tool data table 'ncbi_fcs_adaptor_divisions' from file '/scratch/rico/galaxytools/tools/ncbi_fcs_adaptor/tool_data_table_conf.xml.test' galaxy.visualization.genomes ERROR 2024-02-23 13:13:45,178 [pN:main,p:74649,tN:MainThread] Error reading twobit.loc Traceback (most recent call last): File "/scratch/rico/galaxy/lib/galaxy/visualization/genomes.py", line 220, in reload_genomes with open(twobit_path) as f: FileNotFoundError: [Errno 2] No such file or directory: '/scratch/rico/galaxy/tool-data/twobit.loc' galaxy.util WARNING 2024-02-23 13:13:45,495 [pN:main,p:74649,tN:MainThread] directory not found: /scratch/rico/galaxy/lib/galaxy/util/../../../config/plugins/activities galaxy.tools WARNING 2024-02-23 13:13:45,496 [pN:main,p:74649,tN:MainThread] The default shed tool config file (/tmp/tmpj6ure7bs/shed_tool_conf.xml) has been added to the tool_config_file option, if this is not the desired behavior, please set shed_tool_config_file to your primary shed-enabled tool config file galaxy.tool_util.toolbox.base INFO 2024-02-23 13:13:45,496 [pN:main,p:74649,tN:MainThread] Parsing the tool configuration /tmp/tmpj6ure7bs/tool_conf.xml galaxy.tool_util.toolbox.base DEBUG 2024-02-23 13:13:45,496 [pN:main,p:74649,tN:MainThread] Tool path for tool configuration /tmp/tmpj6ure7bs/tool_conf.xml is None galaxy.tool_util.toolbox.base DEBUG 2024-02-23 13:13:45,506 [pN:main,p:74649,tN:MainThread] Loaded tool id: upload1, version: 1.1.7 into tool panel.. galaxy.tool_util.toolbox.base DEBUG 2024-02-23 13:13:45,509 [pN:main,p:74649,tN:MainThread] Loaded tool id: ncbi_fcs_adaptor, version: 0.5.0+galaxy0 into tool panel.. galaxy.tools WARNING 2024-02-23 13:13:45,509 [pN:main,p:74649,tN:MainThread] The default shed tool config file (/tmp/tmpj6ure7bs/shed_tool_conf.xml) has been added to the tool_config_file option, if this is not the desired behavior, please set shed_tool_config_file to your primary shed-enabled tool config file galaxy.tool_util.toolbox.base INFO 2024-02-23 13:13:45,509 [pN:main,p:74649,tN:MainThread] Parsing the tool configuration /tmp/tmpj6ure7bs/shed_tools_conf.xml galaxy.tool_util.toolbox.base DEBUG 2024-02-23 13:13:45,510 [pN:main,p:74649,tN:MainThread] Tool path for shed tool configuration /tmp/tmpj6ure7bs/shed_tools_conf.xml is /tmp/tmpj6ure7bs/shed_tools galaxy.tools WARNING 2024-02-23 13:13:45,510 [pN:main,p:74649,tN:MainThread] The default shed tool config file (/tmp/tmpj6ure7bs/shed_tool_conf.xml) has been added to the tool_config_file option, if this is not the desired behavior, please set shed_tool_config_file to your primary shed-enabled tool config file galaxy.tool_util.toolbox.base INFO 2024-02-23 13:13:45,510 [pN:main,p:74649,tN:MainThread] Parsing the tool configuration /tmp/tmpj6ure7bs/empty_tool_conf.xml galaxy.tool_util.toolbox.base DEBUG 2024-02-23 13:13:45,510 [pN:main,p:74649,tN:MainThread] Tool path for tool configuration /tmp/tmpj6ure7bs/empty_tool_conf.xml is None galaxy.tool_util.toolbox.base DEBUG 2024-02-23 13:13:45,510 [pN:main,p:74649,tN:MainThread] Reading tools from config files finished (14.795 ms) galaxy.tool_util.toolbox.base DEBUG 2024-02-23 13:13:45,512 [pN:main,p:74649,tN:MainThread] Loaded tool id: upload1, version: 1.1.7 into tool panel.. galaxy.tool_util.toolbox.views.edam DEBUG 2024-02-23 13:13:45,512 [pN:main,p:74649,tN:MainThread] Loading EDAM tool panel finished (1.500 ms) galaxy.tool_util.toolbox.base DEBUG 2024-02-23 13:13:45,513 [pN:main,p:74649,tN:MainThread] Loaded tool id: upload1, version: 1.1.7 into tool panel.. galaxy.tool_util.toolbox.views.edam DEBUG 2024-02-23 13:13:45,513 [pN:main,p:74649,tN:MainThread] Loading EDAM tool panel finished (1.310 ms) galaxy.tool_util.toolbox.integrated_panel DEBUG 2024-02-23 13:13:45,514 [pN:main,p:74649,tN:MainThread] Writing integrated tool panel config file to '/tmp/tmpj6ure7bs/integrated_tool_panel_conf.xml' galaxy.util ERROR 2024-02-23 13:13:45,966 [pN:main,p:74649,tN:MainThread] Error parsing file /tmp/tmpj6ure7bs Traceback (most recent call last): File "/scratch/rico/galaxy/lib/galaxy/util/__init__.py", line 305, in parse_xml tree = etree.parse(str(fname), parser=parser) File "src/lxml/etree.pyx", line 3541, in lxml.etree.parse File "src/lxml/parser.pxi", line 1879, in lxml.etree._parseDocument File "src/lxml/parser.pxi", line 1905, in lxml.etree._parseDocumentFromURL File "src/lxml/parser.pxi", line 1808, in lxml.etree._parseDocFromFile File "src/lxml/parser.pxi", line 1180, in lxml.etree._BaseParser._parseDocFromFile File "src/lxml/parser.pxi", line 618, in lxml.etree._ParserContext._handleParseResultDoc File "src/lxml/parser.pxi", line 728, in lxml.etree._handleParseResult File "src/lxml/parser.pxi", line 657, in lxml.etree._raiseParseError File "/tmp/tmpj6ure7bs", line 1 lxml.etree.XMLSyntaxError: Document is empty, line 1, column 1 galaxy.tools.data_manager.manager ERROR 2024-02-23 13:13:45,967 [pN:main,p:74649,tN:MainThread] There was an error parsing your Data Manager config file "/tmp/tmpj6ure7bs": Document is empty, line 1, column 1 (tmpj6ure7bs, line 1) galaxy.datatypes.registry DEBUG 2024-02-23 13:13:45,969 [pN:main,p:74649,tN:MainThread] Loaded display application 'ucsc_bam' for datatype 'bam', inherit=False. galaxy.datatypes.registry DEBUG 2024-02-23 13:13:45,970 [pN:main,p:74649,tN:MainThread] Loaded display application 'ensembl_bam' for datatype 'bam', inherit=False. galaxy.datatypes.display_applications.application ERROR 2024-02-23 13:13:45,971 [pN:main,p:74649,tN:MainThread] Error loading a set of Dynamic Display Application links: Unable to find data table named "igv_broad_genomes". galaxy.datatypes.registry DEBUG 2024-02-23 13:13:45,973 [pN:main,p:74649,tN:MainThread] Loaded display application 'igv_bam' for datatype 'bam', inherit=False. galaxy.datatypes.registry DEBUG 2024-02-23 13:13:45,973 [pN:main,p:74649,tN:MainThread] Loaded display application 'igb_bam' for datatype 'bam', inherit=False. galaxy.datatypes.display_applications.application ERROR 2024-02-23 13:13:45,974 [pN:main,p:74649,tN:MainThread] Error loading a set of Dynamic Display Application links: Unable to find data table named "bam_iobio". galaxy.datatypes.registry DEBUG 2024-02-23 13:13:45,974 [pN:main,p:74649,tN:MainThread] Loaded display application 'iobio_bam' for datatype 'bam', inherit=False. galaxy.datatypes.registry DEBUG 2024-02-23 13:13:45,974 [pN:main,p:74649,tN:MainThread] Loaded display application 'igb_bed' for datatype 'bed', inherit=False. galaxy.datatypes.registry DEBUG 2024-02-23 13:13:45,974 [pN:main,p:74649,tN:MainThread] Loaded display application 'igb_bedgraph' for datatype 'bedgraph', inherit=False. galaxy.datatypes.registry DEBUG 2024-02-23 13:13:45,975 [pN:main,p:74649,tN:MainThread] Loaded display application 'ucsc_bigbed' for datatype 'bigbed', inherit=False. galaxy.datatypes.registry DEBUG 2024-02-23 13:13:45,975 [pN:main,p:74649,tN:MainThread] Loaded display application 'igb_bb' for datatype 'bigbed', inherit=False. galaxy.datatypes.registry DEBUG 2024-02-23 13:13:45,976 [pN:main,p:74649,tN:MainThread] Loaded display application 'ucsc_bigwig' for datatype 'bigwig', inherit=False. galaxy.datatypes.registry DEBUG 2024-02-23 13:13:45,976 [pN:main,p:74649,tN:MainThread] Loaded display application 'igb_bigwig' for datatype 'bigwig', inherit=False. galaxy.datatypes.registry DEBUG 2024-02-23 13:13:45,977 [pN:main,p:74649,tN:MainThread] Loaded display application 'igv_bigwig' for datatype 'bigwig', inherit=False. galaxy.datatypes.display_applications.application ERROR 2024-02-23 13:13:45,977 [pN:main,p:74649,tN:MainThread] Error loading a set of Dynamic Display Application links: Unable to find data table named "intermine_simple_display". galaxy.datatypes.registry DEBUG 2024-02-23 13:13:45,977 [pN:main,p:74649,tN:MainThread] Loaded display application 'intermine_simple' for datatype 'intermine_tabular', inherit=False. galaxy.datatypes.display_applications.application ERROR 2024-02-23 13:13:45,978 [pN:main,p:74649,tN:MainThread] Error loading a set of Dynamic Display Application links: Unable to find data table named "igv_broad_genomes". galaxy.datatypes.registry DEBUG 2024-02-23 13:13:45,978 [pN:main,p:74649,tN:MainThread] Loaded display application 'igv_fasta' for datatype 'fasta', inherit=True. galaxy.datatypes.registry DEBUG 2024-02-23 13:13:45,979 [pN:main,p:74649,tN:MainThread] Loaded display application 'ensembl_gff' for datatype 'gff', inherit=True. galaxy.datatypes.display_applications.application ERROR 2024-02-23 13:13:45,980 [pN:main,p:74649,tN:MainThread] Error loading a set of Dynamic Display Application links: Unable to find data table named "igv_broad_genomes". galaxy.datatypes.registry DEBUG 2024-02-23 13:13:45,980 [pN:main,p:74649,tN:MainThread] Loaded display application 'igv_gff' for datatype 'gff', inherit=True. galaxy.datatypes.registry DEBUG 2024-02-23 13:13:45,980 [pN:main,p:74649,tN:MainThread] Loaded display application 'igb_gtf' for datatype 'gtf', inherit=False. galaxy.datatypes.registry DEBUG 2024-02-23 13:13:45,981 [pN:main,p:74649,tN:MainThread] Loaded display application 'ensembl_interval' for datatype 'interval', inherit=True. galaxy.datatypes.registry DEBUG 2024-02-23 13:13:45,982 [pN:main,p:74649,tN:MainThread] Loaded display application 'gbrowse_interval_as_bed' for datatype 'interval', inherit=True. galaxy.datatypes.registry DEBUG 2024-02-23 13:13:45,983 [pN:main,p:74649,tN:MainThread] Loaded display application 'rviewer_interval' for datatype 'interval', inherit=True. galaxy.datatypes.display_applications.application ERROR 2024-02-23 13:13:45,984 [pN:main,p:74649,tN:MainThread] Error loading a set of Dynamic Display Application links: Unable to find data table named "igv_broad_genomes". galaxy.datatypes.registry DEBUG 2024-02-23 13:13:45,984 [pN:main,p:74649,tN:MainThread] Loaded display application 'igv_interval_as_bed' for datatype 'interval', inherit=True. galaxy.datatypes.registry DEBUG 2024-02-23 13:13:45,984 [pN:main,p:74649,tN:MainThread] Loaded display application 'avivator' for datatype 'ome.tiff', inherit=False. galaxy.datatypes.display_applications.application ERROR 2024-02-23 13:13:45,984 [pN:main,p:74649,tN:MainThread] Error loading a set of Dynamic Display Application links: Unable to find data table named "q2view_display". galaxy.datatypes.registry DEBUG 2024-02-23 13:13:45,984 [pN:main,p:74649,tN:MainThread] Loaded display application 'q2view' for datatype 'qza', inherit=False. galaxy.datatypes.display_applications.application ERROR 2024-02-23 13:13:45,984 [pN:main,p:74649,tN:MainThread] Error loading a set of Dynamic Display Application links: Unable to find data table named "q2view_display". galaxy.datatypes.registry DEBUG 2024-02-23 13:13:45,985 [pN:main,p:74649,tN:MainThread] Loaded display application 'q2view' for datatype 'qzv', inherit=False. galaxy.datatypes.registry DEBUG 2024-02-23 13:13:45,985 [pN:main,p:74649,tN:MainThread] Loaded display application 'ucsc_maf_customtrack' for datatype 'mafcustomtrack', inherit=False. galaxy.datatypes.registry DEBUG 2024-02-23 13:13:45,985 [pN:main,p:74649,tN:MainThread] Loaded display application 'minerva_tabular' for datatype 'tabular', inherit=False. galaxy.datatypes.registry DEBUG 2024-02-23 13:13:45,986 [pN:main,p:74649,tN:MainThread] Loaded display application 'ucsc_vcf' for datatype 'vcf', inherit=False. galaxy.datatypes.display_applications.application ERROR 2024-02-23 13:13:45,987 [pN:main,p:74649,tN:MainThread] Error loading a set of Dynamic Display Application links: Unable to find data table named "igv_broad_genomes". galaxy.datatypes.registry DEBUG 2024-02-23 13:13:45,987 [pN:main,p:74649,tN:MainThread] Loaded display application 'igv_vcf' for datatype 'vcf', inherit=False. galaxy.datatypes.registry DEBUG 2024-02-23 13:13:45,987 [pN:main,p:74649,tN:MainThread] Loaded display application 'rviewer_vcf' for datatype 'vcf', inherit=True. galaxy.datatypes.display_applications.application ERROR 2024-02-23 13:13:45,987 [pN:main,p:74649,tN:MainThread] Error loading a set of Dynamic Display Application links: Unable to find data table named "vcf_iobio". galaxy.datatypes.registry DEBUG 2024-02-23 13:13:45,988 [pN:main,p:74649,tN:MainThread] Loaded display application 'iobio_vcf' for datatype 'vcf', inherit=False. galaxy.datatypes.registry DEBUG 2024-02-23 13:13:45,988 [pN:main,p:74649,tN:MainThread] Loaded display application 'igb_wig' for datatype 'wig', inherit=False. galaxy.datatypes.display_applications.application ERROR 2024-02-23 13:13:45,988 [pN:main,p:74649,tN:MainThread] Error loading a set of Dynamic Display Application links: Unable to find data table named "igv_broad_genomes". galaxy.datatypes.registry DEBUG 2024-02-23 13:13:45,989 [pN:main,p:74649,tN:MainThread] Loaded display application 'igv_vcf' for datatype 'vcf_bgzip', inherit=False. galaxy.datatypes.display_applications.application ERROR 2024-02-23 13:13:45,989 [pN:main,p:74649,tN:MainThread] Error loading a set of Dynamic Display Application links: Unable to find data table named "igv_broad_genomes". galaxy.datatypes.registry DEBUG 2024-02-23 13:13:45,989 [pN:main,p:74649,tN:MainThread] Loaded display application 'igv_genbank' for datatype 'genbank', inherit=False. galaxy.datatypes.display_applications.application ERROR 2024-02-23 13:13:45,989 [pN:main,p:74649,tN:MainThread] Error loading a set of Dynamic Display Application links: Unable to find data table named "biom_simple_display". galaxy.datatypes.registry DEBUG 2024-02-23 13:13:45,990 [pN:main,p:74649,tN:MainThread] Loaded display application 'biom_simple' for datatype 'biom1', inherit=False. galaxy.datatypes.display_applications.application ERROR 2024-02-23 13:13:45,990 [pN:main,p:74649,tN:MainThread] Error loading a set of Dynamic Display Application links: Unable to find data table named "icn3d_simple_display". galaxy.datatypes.registry DEBUG 2024-02-23 13:13:45,990 [pN:main,p:74649,tN:MainThread] Loaded display application 'icn3d_simple' for datatype 'sdf', inherit=False. galaxy.datatypes.display_applications.application ERROR 2024-02-23 13:13:45,990 [pN:main,p:74649,tN:MainThread] Error loading a set of Dynamic Display Application links: Unable to find data table named "icn3d_simple_display". galaxy.datatypes.registry DEBUG 2024-02-23 13:13:45,990 [pN:main,p:74649,tN:MainThread] Loaded display application 'icn3d_simple' for datatype 'mol2', inherit=False. galaxy.datatypes.display_applications.application ERROR 2024-02-23 13:13:45,990 [pN:main,p:74649,tN:MainThread] Error loading a set of Dynamic Display Application links: Unable to find data table named "icn3d_simple_display". galaxy.datatypes.registry DEBUG 2024-02-23 13:13:45,990 [pN:main,p:74649,tN:MainThread] Loaded display application 'icn3d_simple' for datatype 'pdb', inherit=False. galaxy.datatypes.registry DEBUG 2024-02-23 13:13:45,990 [pN:main,p:74649,tN:MainThread] Loaded display application 'ucsc_trackhub' for datatype 'trackhub', inherit=False. galaxy.datatypes.registry DEBUG 2024-02-23 13:13:45,991 [pN:main,p:74649,tN:MainThread] Adding inherited display application 'ensembl_interval' to datatype 'bed' galaxy.datatypes.registry DEBUG 2024-02-23 13:13:45,991 [pN:main,p:74649,tN:MainThread] Adding inherited display application 'gbrowse_interval_as_bed' to datatype 'bed' galaxy.datatypes.registry DEBUG 2024-02-23 13:13:45,991 [pN:main,p:74649,tN:MainThread] Adding inherited display application 'rviewer_interval' to datatype 'bed' galaxy.datatypes.registry DEBUG 2024-02-23 13:13:45,991 [pN:main,p:74649,tN:MainThread] Adding inherited display application 'igv_interval_as_bed' to datatype 'bed' galaxy.datatypes.registry DEBUG 2024-02-23 13:13:45,991 [pN:main,p:74649,tN:MainThread] Adding inherited display application 'ensembl_interval' to datatype 'bedgraph' galaxy.datatypes.registry DEBUG 2024-02-23 13:13:45,991 [pN:main,p:74649,tN:MainThread] Adding inherited display application 'gbrowse_interval_as_bed' to datatype 'bedgraph' galaxy.datatypes.registry DEBUG 2024-02-23 13:13:45,991 [pN:main,p:74649,tN:MainThread] Adding inherited display application 'rviewer_interval' to datatype 'bedgraph' galaxy.datatypes.registry DEBUG 2024-02-23 13:13:45,991 [pN:main,p:74649,tN:MainThread] Adding inherited display application 'igv_interval_as_bed' to datatype 'bedgraph' galaxy.datatypes.registry DEBUG 2024-02-23 13:13:45,991 [pN:main,p:74649,tN:MainThread] Adding inherited display application 'ensembl_interval' to datatype 'bedstrict' galaxy.datatypes.registry DEBUG 2024-02-23 13:13:45,991 [pN:main,p:74649,tN:MainThread] Adding inherited display application 'gbrowse_interval_as_bed' to datatype 'bedstrict' galaxy.datatypes.registry DEBUG 2024-02-23 13:13:45,991 [pN:main,p:74649,tN:MainThread] Adding inherited display application 'rviewer_interval' to datatype 'bedstrict' galaxy.datatypes.registry DEBUG 2024-02-23 13:13:45,991 [pN:main,p:74649,tN:MainThread] Adding inherited display application 'igv_interval_as_bed' to datatype 'bedstrict' galaxy.datatypes.registry DEBUG 2024-02-23 13:13:45,991 [pN:main,p:74649,tN:MainThread] Adding inherited display application 'ensembl_interval' to datatype 'bed6' galaxy.datatypes.registry DEBUG 2024-02-23 13:13:45,991 [pN:main,p:74649,tN:MainThread] Adding inherited display application 'gbrowse_interval_as_bed' to datatype 'bed6' galaxy.datatypes.registry DEBUG 2024-02-23 13:13:45,991 [pN:main,p:74649,tN:MainThread] Adding inherited display application 'rviewer_interval' to datatype 'bed6' galaxy.datatypes.registry DEBUG 2024-02-23 13:13:45,991 [pN:main,p:74649,tN:MainThread] Adding inherited display application 'igv_interval_as_bed' to datatype 'bed6' galaxy.datatypes.registry DEBUG 2024-02-23 13:13:45,991 [pN:main,p:74649,tN:MainThread] Adding inherited display application 'ensembl_interval' to datatype 'bed12' galaxy.datatypes.registry DEBUG 2024-02-23 13:13:45,991 [pN:main,p:74649,tN:MainThread] Adding inherited display application 'gbrowse_interval_as_bed' to datatype 'bed12' galaxy.datatypes.registry DEBUG 2024-02-23 13:13:45,992 [pN:main,p:74649,tN:MainThread] Adding inherited display application 'rviewer_interval' to datatype 'bed12' galaxy.datatypes.registry DEBUG 2024-02-23 13:13:45,992 [pN:main,p:74649,tN:MainThread] Adding inherited display application 'igv_interval_as_bed' to datatype 'bed12' galaxy.datatypes.registry DEBUG 2024-02-23 13:13:45,992 [pN:main,p:74649,tN:MainThread] Adding inherited display application 'ensembl_interval' to datatype 'probed' galaxy.datatypes.registry DEBUG 2024-02-23 13:13:45,992 [pN:main,p:74649,tN:MainThread] Adding inherited display application 'gbrowse_interval_as_bed' to datatype 'probed' galaxy.datatypes.registry DEBUG 2024-02-23 13:13:45,992 [pN:main,p:74649,tN:MainThread] Adding inherited display application 'rviewer_interval' to datatype 'probed' galaxy.datatypes.registry DEBUG 2024-02-23 13:13:45,992 [pN:main,p:74649,tN:MainThread] Adding inherited display application 'igv_interval_as_bed' to datatype 'probed' galaxy.datatypes.registry DEBUG 2024-02-23 13:13:45,992 [pN:main,p:74649,tN:MainThread] Adding inherited display application 'ensembl_interval' to datatype 'chrint' galaxy.datatypes.registry DEBUG 2024-02-23 13:13:45,992 [pN:main,p:74649,tN:MainThread] Adding inherited display application 'gbrowse_interval_as_bed' to datatype 'chrint' galaxy.datatypes.registry DEBUG 2024-02-23 13:13:45,992 [pN:main,p:74649,tN:MainThread] Adding inherited display application 'rviewer_interval' to datatype 'chrint' galaxy.datatypes.registry DEBUG 2024-02-23 13:13:45,992 [pN:main,p:74649,tN:MainThread] Adding inherited display application 'igv_interval_as_bed' to datatype 'chrint' galaxy.datatypes.registry DEBUG 2024-02-23 13:13:45,992 [pN:main,p:74649,tN:MainThread] Adding inherited display application 'igv_fasta' to datatype 'fasta.gz' galaxy.datatypes.registry DEBUG 2024-02-23 13:13:45,992 [pN:main,p:74649,tN:MainThread] Adding inherited display application 'ensembl_gff' to datatype 'gff3' galaxy.datatypes.registry DEBUG 2024-02-23 13:13:45,992 [pN:main,p:74649,tN:MainThread] Adding inherited display application 'igv_gff' to datatype 'gff3' galaxy.datatypes.registry DEBUG 2024-02-23 13:13:45,992 [pN:main,p:74649,tN:MainThread] Adding inherited display application 'ensembl_gff' to datatype 'gff3.gz' galaxy.datatypes.registry DEBUG 2024-02-23 13:13:45,992 [pN:main,p:74649,tN:MainThread] Adding inherited display application 'igv_gff' to datatype 'gff3.gz' galaxy.datatypes.registry DEBUG 2024-02-23 13:13:45,992 [pN:main,p:74649,tN:MainThread] Adding inherited display application 'ensembl_gff' to datatype 'gff3.bz2' galaxy.datatypes.registry DEBUG 2024-02-23 13:13:45,993 [pN:main,p:74649,tN:MainThread] Adding inherited display application 'igv_gff' to datatype 'gff3.bz2' galaxy.datatypes.registry DEBUG 2024-02-23 13:13:45,993 [pN:main,p:74649,tN:MainThread] Adding inherited display application 'ensembl_gff' to datatype 'gtf' galaxy.datatypes.registry DEBUG 2024-02-23 13:13:45,993 [pN:main,p:74649,tN:MainThread] Adding inherited display application 'igv_gff' to datatype 'gtf' galaxy.datatypes.registry DEBUG 2024-02-23 13:13:45,994 [pN:main,p:74649,tN:MainThread] Adding inherited display application 'ensembl_interval' to datatype 'encodepeak' galaxy.datatypes.registry DEBUG 2024-02-23 13:13:45,994 [pN:main,p:74649,tN:MainThread] Adding inherited display application 'gbrowse_interval_as_bed' to datatype 'encodepeak' galaxy.datatypes.registry DEBUG 2024-02-23 13:13:45,994 [pN:main,p:74649,tN:MainThread] Adding inherited display application 'rviewer_interval' to datatype 'encodepeak' galaxy.datatypes.registry DEBUG 2024-02-23 13:13:45,994 [pN:main,p:74649,tN:MainThread] Adding inherited display application 'igv_interval_as_bed' to datatype 'encodepeak' galaxy.datatypes.registry DEBUG 2024-02-23 13:13:45,994 [pN:main,p:74649,tN:MainThread] Adding inherited display application 'igv_fasta' to datatype 'sequences' galaxy.datatypes.registry DEBUG 2024-02-23 13:13:45,994 [pN:main,p:74649,tN:MainThread] Adding inherited display application 'ensembl_interval' to datatype 'interval_tabix.gz' galaxy.datatypes.registry DEBUG 2024-02-23 13:13:45,994 [pN:main,p:74649,tN:MainThread] Adding inherited display application 'gbrowse_interval_as_bed' to datatype 'interval_tabix.gz' galaxy.datatypes.registry DEBUG 2024-02-23 13:13:45,994 [pN:main,p:74649,tN:MainThread] Adding inherited display application 'rviewer_interval' to datatype 'interval_tabix.gz' galaxy.datatypes.registry DEBUG 2024-02-23 13:13:45,994 [pN:main,p:74649,tN:MainThread] Adding inherited display application 'igv_interval_as_bed' to datatype 'interval_tabix.gz' galaxy.datatypes.registry DEBUG 2024-02-23 13:13:45,994 [pN:main,p:74649,tN:MainThread] Adding inherited display application 'ensembl_interval' to datatype 'juicer_medium_tabix.gz' galaxy.datatypes.registry DEBUG 2024-02-23 13:13:45,994 [pN:main,p:74649,tN:MainThread] Adding inherited display application 'gbrowse_interval_as_bed' to datatype 'juicer_medium_tabix.gz' galaxy.datatypes.registry DEBUG 2024-02-23 13:13:45,994 [pN:main,p:74649,tN:MainThread] Adding inherited display application 'rviewer_interval' to datatype 'juicer_medium_tabix.gz' galaxy.datatypes.registry DEBUG 2024-02-23 13:13:45,995 [pN:main,p:74649,tN:MainThread] Adding inherited display application 'igv_interval_as_bed' to datatype 'juicer_medium_tabix.gz' galaxy.datatypes.registry DEBUG 2024-02-23 13:13:45,995 [pN:main,p:74649,tN:MainThread] Adding inherited display application 'ensembl_interval' to datatype 'bed_tabix.gz' galaxy.datatypes.registry DEBUG 2024-02-23 13:13:45,995 [pN:main,p:74649,tN:MainThread] Adding inherited display application 'gbrowse_interval_as_bed' to datatype 'bed_tabix.gz' galaxy.datatypes.registry DEBUG 2024-02-23 13:13:45,995 [pN:main,p:74649,tN:MainThread] Adding inherited display application 'rviewer_interval' to datatype 'bed_tabix.gz' galaxy.datatypes.registry DEBUG 2024-02-23 13:13:45,995 [pN:main,p:74649,tN:MainThread] Adding inherited display application 'igv_interval_as_bed' to datatype 'bed_tabix.gz' galaxy.datatypes.registry DEBUG 2024-02-23 13:13:45,995 [pN:main,p:74649,tN:MainThread] Adding inherited display application 'ensembl_interval' to datatype 'gff_tabix.gz' galaxy.datatypes.registry DEBUG 2024-02-23 13:13:45,995 [pN:main,p:74649,tN:MainThread] Adding inherited display application 'gbrowse_interval_as_bed' to datatype 'gff_tabix.gz' galaxy.datatypes.registry DEBUG 2024-02-23 13:13:45,995 [pN:main,p:74649,tN:MainThread] Adding inherited display application 'rviewer_interval' to datatype 'gff_tabix.gz' galaxy.datatypes.registry DEBUG 2024-02-23 13:13:45,995 [pN:main,p:74649,tN:MainThread] Adding inherited display application 'igv_interval_as_bed' to datatype 'gff_tabix.gz' galaxy.datatypes.registry DEBUG 2024-02-23 13:13:45,996 [pN:main,p:74649,tN:MainThread] Adding inherited display application 'igv_fasta' to datatype 'mothur.align' galaxy.datatypes.registry DEBUG 2024-02-23 13:13:45,999 [pN:main,p:74649,tN:MainThread] Loaded converter: CONVERTER_uncompressed_to_gz galaxy.datatypes.registry DEBUG 2024-02-23 13:13:46,000 [pN:main,p:74649,tN:MainThread] Loaded converter: CONVERTER_gz_to_uncompressed galaxy.datatypes.registry DEBUG 2024-02-23 13:13:46,002 [pN:main,p:74649,tN:MainThread] Loaded converter: CONVERTER_uncompressed_to_gz galaxy.datatypes.registry DEBUG 2024-02-23 13:13:46,003 [pN:main,p:74649,tN:MainThread] Loaded converter: CONVERTER_gz_to_uncompressed galaxy.datatypes.registry DEBUG 2024-02-23 13:13:46,005 [pN:main,p:74649,tN:MainThread] Loaded converter: CONVERTER_uncompressed_to_gz galaxy.datatypes.registry DEBUG 2024-02-23 13:13:46,006 [pN:main,p:74649,tN:MainThread] Loaded converter: CONVERTER_gz_to_uncompressed galaxy.datatypes.registry DEBUG 2024-02-23 13:13:46,007 [pN:main,p:74649,tN:MainThread] Loaded converter: CONVERTER_Bam_Bai_0 galaxy.datatypes.registry DEBUG 2024-02-23 13:13:46,008 [pN:main,p:74649,tN:MainThread] Loaded converter: CONVERTER_bam_to_bigwig_0 galaxy.datatypes.registry DEBUG 2024-02-23 13:13:46,010 [pN:main,p:74649,tN:MainThread] Loaded converter: CONVERTER_bam_to_qname_sorted_bam galaxy.datatypes.registry DEBUG 2024-02-23 13:13:46,011 [pN:main,p:74649,tN:MainThread] Loaded converter: CONVERTER_bam_to_bigwig_0 galaxy.datatypes.registry DEBUG 2024-02-23 13:13:46,012 [pN:main,p:74649,tN:MainThread] Loaded converter: CONVERTER_bam_to_coodinate_sorted_bam galaxy.datatypes.registry DEBUG 2024-02-23 13:13:46,013 [pN:main,p:74649,tN:MainThread] Loaded converter: CONVERTER_bam_to_qname_sorted_bam galaxy.datatypes.registry DEBUG 2024-02-23 13:13:46,014 [pN:main,p:74649,tN:MainThread] Loaded converter: CONVERTER_cram_to_bam_0 galaxy.datatypes.registry DEBUG 2024-02-23 13:13:46,016 [pN:main,p:74649,tN:MainThread] Loaded converter: CONVERTER_bed_to_gff_0 galaxy.datatypes.registry DEBUG 2024-02-23 13:13:46,018 [pN:main,p:74649,tN:MainThread] Loaded converter: CONVERTER_interval_to_bgzip_0 galaxy.datatypes.registry DEBUG 2024-02-23 13:13:46,020 [pN:main,p:74649,tN:MainThread] Loaded converter: CONVERTER_interval_to_tabix_0 galaxy.datatypes.registry DEBUG 2024-02-23 13:13:46,022 [pN:main,p:74649,tN:MainThread] Loaded converter: CONVERTER_bed_gff_or_vcf_to_bigwig_0 galaxy.datatypes.registry DEBUG 2024-02-23 13:13:46,023 [pN:main,p:74649,tN:MainThread] Loaded converter: CONVERTER_bed_to_fli_0 galaxy.datatypes.registry DEBUG 2024-02-23 13:13:46,024 [pN:main,p:74649,tN:MainThread] Loaded converter: CONVERTER_bedgraph_to_bigwig galaxy.datatypes.registry DEBUG 2024-02-23 13:13:46,025 [pN:main,p:74649,tN:MainThread] Loaded converter: CONVERTER_len_to_linecount galaxy.datatypes.registry DEBUG 2024-02-23 13:13:46,026 [pN:main,p:74649,tN:MainThread] Loaded converter: CONVERTER_parquet_to_csv galaxy.datatypes.registry DEBUG 2024-02-23 13:13:46,029 [pN:main,p:74649,tN:MainThread] Loaded converter: bigwigtowig galaxy.datatypes.registry DEBUG 2024-02-23 13:13:46,031 [pN:main,p:74649,tN:MainThread] Loaded converter: CONVERTER_interval_to_bgzip_0 galaxy.datatypes.registry DEBUG 2024-02-23 13:13:46,033 [pN:main,p:74649,tN:MainThread] Loaded converter: CONVERTER_interval_to_tabix_0 galaxy.datatypes.registry DEBUG 2024-02-23 13:13:46,035 [pN:main,p:74649,tN:MainThread] Loaded converter: CONVERTER_bed_gff_or_vcf_to_bigwig_0 galaxy.datatypes.registry DEBUG 2024-02-23 13:13:46,036 [pN:main,p:74649,tN:MainThread] Loaded converter: csv_to_tabular galaxy.datatypes.registry DEBUG 2024-02-23 13:13:46,037 [pN:main,p:74649,tN:MainThread] Loaded converter: tabular_to_csv galaxy.datatypes.registry DEBUG 2024-02-23 13:13:46,038 [pN:main,p:74649,tN:MainThread] Loaded converter: CONVERTER_fasta_to_tabular galaxy.datatypes.registry DEBUG 2024-02-23 13:13:46,039 [pN:main,p:74649,tN:MainThread] Loaded converter: CONVERTER_fasta_to_bowtie_base_index galaxy.datatypes.registry DEBUG 2024-02-23 13:13:46,040 [pN:main,p:74649,tN:MainThread] Loaded converter: CONVERTER_fasta_to_bowtie_color_index galaxy.datatypes.registry DEBUG 2024-02-23 13:13:46,041 [pN:main,p:74649,tN:MainThread] Loaded converter: CONVERTER_fasta_to_2bit galaxy.datatypes.registry DEBUG 2024-02-23 13:13:46,042 [pN:main,p:74649,tN:MainThread] Loaded converter: CONVERTER_fasta_to_len galaxy.datatypes.registry DEBUG 2024-02-23 13:13:46,044 [pN:main,p:74649,tN:MainThread] Loaded converter: CONVERTER_fasta_to_fai galaxy.datatypes.registry DEBUG 2024-02-23 13:13:46,045 [pN:main,p:74649,tN:MainThread] Loaded converter: CONVERTER_uncompressed_to_gz galaxy.datatypes.registry DEBUG 2024-02-23 13:13:46,047 [pN:main,p:74649,tN:MainThread] Loaded converter: CONVERTER_gz_to_uncompressed galaxy.datatypes.registry DEBUG 2024-02-23 13:13:46,048 [pN:main,p:74649,tN:MainThread] Loaded converter: CONVERTER_fastq_to_fqtoc0 galaxy.datatypes.registry DEBUG 2024-02-23 13:13:46,049 [pN:main,p:74649,tN:MainThread] Loaded converter: CONVERTER_uncompressed_to_gz galaxy.datatypes.registry DEBUG 2024-02-23 13:13:46,051 [pN:main,p:74649,tN:MainThread] Loaded converter: CONVERTER_gz_to_uncompressed galaxy.datatypes.registry DEBUG 2024-02-23 13:13:46,052 [pN:main,p:74649,tN:MainThread] Loaded converter: CONVERTER_bz2_to_uncompressed galaxy.datatypes.registry DEBUG 2024-02-23 13:13:46,053 [pN:main,p:74649,tN:MainThread] Loaded converter: CONVERTER_fastq_to_fqtoc0 galaxy.datatypes.registry DEBUG 2024-02-23 13:13:46,055 [pN:main,p:74649,tN:MainThread] Loaded converter: CONVERTER_uncompressed_to_gz galaxy.datatypes.registry DEBUG 2024-02-23 13:13:46,056 [pN:main,p:74649,tN:MainThread] Loaded converter: CONVERTER_gz_to_uncompressed galaxy.datatypes.registry DEBUG 2024-02-23 13:13:46,057 [pN:main,p:74649,tN:MainThread] Loaded converter: CONVERTER_bz2_to_uncompressed galaxy.datatypes.registry DEBUG 2024-02-23 13:13:46,058 [pN:main,p:74649,tN:MainThread] Loaded converter: CONVERTER_fastq_to_fqtoc0 galaxy.datatypes.registry DEBUG 2024-02-23 13:13:46,060 [pN:main,p:74649,tN:MainThread] Loaded converter: CONVERTER_uncompressed_to_gz galaxy.datatypes.registry DEBUG 2024-02-23 13:13:46,061 [pN:main,p:74649,tN:MainThread] Loaded converter: CONVERTER_gz_to_uncompressed galaxy.datatypes.registry DEBUG 2024-02-23 13:13:46,062 [pN:main,p:74649,tN:MainThread] Loaded converter: CONVERTER_bz2_to_uncompressed galaxy.datatypes.registry DEBUG 2024-02-23 13:13:46,064 [pN:main,p:74649,tN:MainThread] Loaded converter: CONVERTER_fastq_to_fqtoc0 galaxy.datatypes.registry DEBUG 2024-02-23 13:13:46,065 [pN:main,p:74649,tN:MainThread] Loaded converter: CONVERTER_uncompressed_to_gz galaxy.datatypes.registry DEBUG 2024-02-23 13:13:46,067 [pN:main,p:74649,tN:MainThread] Loaded converter: CONVERTER_gz_to_uncompressed galaxy.datatypes.registry DEBUG 2024-02-23 13:13:46,069 [pN:main,p:74649,tN:MainThread] Loaded converter: CONVERTER_bz2_to_uncompressed galaxy.datatypes.registry DEBUG 2024-02-23 13:13:46,070 [pN:main,p:74649,tN:MainThread] Loaded converter: CONVERTER_fastq_to_fqtoc0 galaxy.datatypes.registry DEBUG 2024-02-23 13:13:46,072 [pN:main,p:74649,tN:MainThread] Loaded converter: CONVERTER_uncompressed_to_gz galaxy.datatypes.registry DEBUG 2024-02-23 13:13:46,073 [pN:main,p:74649,tN:MainThread] Loaded converter: CONVERTER_gz_to_uncompressed galaxy.datatypes.registry DEBUG 2024-02-23 13:13:46,074 [pN:main,p:74649,tN:MainThread] Loaded converter: CONVERTER_bz2_to_uncompressed galaxy.datatypes.registry DEBUG 2024-02-23 13:13:46,075 [pN:main,p:74649,tN:MainThread] Loaded converter: CONVERTER_gff_to_bed_0 galaxy.datatypes.registry DEBUG 2024-02-23 13:13:46,076 [pN:main,p:74649,tN:MainThread] Loaded converter: CONVERTER_gff_to_interval_index_0 galaxy.datatypes.registry DEBUG 2024-02-23 13:13:46,078 [pN:main,p:74649,tN:MainThread] Loaded converter: CONVERTER_bed_gff_or_vcf_to_bigwig_0 galaxy.datatypes.registry DEBUG 2024-02-23 13:13:46,079 [pN:main,p:74649,tN:MainThread] Loaded converter: CONVERTER_gff_to_fli_0 galaxy.datatypes.registry DEBUG 2024-02-23 13:13:46,081 [pN:main,p:74649,tN:MainThread] Loaded converter: CONVERTER_interval_to_bgzip_0 galaxy.datatypes.registry DEBUG 2024-02-23 13:13:46,083 [pN:main,p:74649,tN:MainThread] Loaded converter: CONVERTER_interval_to_tabix_0 galaxy.datatypes.registry DEBUG 2024-02-23 13:13:46,085 [pN:main,p:74649,tN:MainThread] Loaded converter: CONVERTER_uncompressed_to_gz galaxy.datatypes.registry DEBUG 2024-02-23 13:13:46,086 [pN:main,p:74649,tN:MainThread] Loaded converter: CONVERTER_gz_to_uncompressed galaxy.datatypes.registry DEBUG 2024-02-23 13:13:46,087 [pN:main,p:74649,tN:MainThread] Loaded converter: CONVERTER_bz2_to_uncompressed galaxy.datatypes.registry DEBUG 2024-02-23 13:13:46,089 [pN:main,p:74649,tN:MainThread] Loaded converter: CONVERTER_gff_to_interval_index_0 galaxy.datatypes.registry DEBUG 2024-02-23 13:13:46,090 [pN:main,p:74649,tN:MainThread] Loaded converter: CONVERTER_bed_gff_or_vcf_to_bigwig_0 galaxy.datatypes.registry DEBUG 2024-02-23 13:13:46,091 [pN:main,p:74649,tN:MainThread] Loaded converter: CONVERTER_interval_to_bed_0 galaxy.datatypes.registry DEBUG 2024-02-23 13:13:46,092 [pN:main,p:74649,tN:MainThread] Loaded converter: CONVERTER_interval_to_bedstrict_0 galaxy.datatypes.registry DEBUG 2024-02-23 13:13:46,093 [pN:main,p:74649,tN:MainThread] Loaded converter: CONVERTER_interval_to_bed6_0 galaxy.datatypes.registry DEBUG 2024-02-23 13:13:46,094 [pN:main,p:74649,tN:MainThread] Loaded converter: CONVERTER_interval_to_bed12_0 galaxy.datatypes.registry DEBUG 2024-02-23 13:13:46,097 [pN:main,p:74649,tN:MainThread] Loaded converter: CONVERTER_interval_to_bgzip_0 galaxy.datatypes.registry DEBUG 2024-02-23 13:13:46,099 [pN:main,p:74649,tN:MainThread] Loaded converter: CONVERTER_interval_to_tabix_0 galaxy.datatypes.registry DEBUG 2024-02-23 13:13:46,101 [pN:main,p:74649,tN:MainThread] Loaded converter: CONVERTER_interval_to_bigwig_0 galaxy.datatypes.registry DEBUG 2024-02-23 13:13:46,102 [pN:main,p:74649,tN:MainThread] Loaded converter: CONVERTER_picard_interval_list_to_bed6 galaxy.datatypes.registry DEBUG 2024-02-23 13:13:46,103 [pN:main,p:74649,tN:MainThread] Loaded converter: CONVERTER_tar_to_directory galaxy.datatypes.registry DEBUG 2024-02-23 13:13:46,104 [pN:main,p:74649,tN:MainThread] Loaded converter: CONVERTER_uncompressed_to_gz galaxy.datatypes.registry DEBUG 2024-02-23 13:13:46,106 [pN:main,p:74649,tN:MainThread] Loaded converter: CONVERTER_gz_to_uncompressed galaxy.datatypes.registry DEBUG 2024-02-23 13:13:46,107 [pN:main,p:74649,tN:MainThread] Loaded converter: CONVERTER_uncompressed_to_gz galaxy.datatypes.registry DEBUG 2024-02-23 13:13:46,109 [pN:main,p:74649,tN:MainThread] Loaded converter: CONVERTER_gz_to_uncompressed galaxy.datatypes.registry DEBUG 2024-02-23 13:13:46,110 [pN:main,p:74649,tN:MainThread] Loaded converter: CONVERTER_uncompressed_to_gz galaxy.datatypes.registry DEBUG 2024-02-23 13:13:46,111 [pN:main,p:74649,tN:MainThread] Loaded converter: CONVERTER_gz_to_uncompressed galaxy.datatypes.registry DEBUG 2024-02-23 13:13:46,113 [pN:main,p:74649,tN:MainThread] Loaded converter: CONVERTER_maf_to_fasta_0 galaxy.datatypes.registry DEBUG 2024-02-23 13:13:46,114 [pN:main,p:74649,tN:MainThread] Loaded converter: CONVERTER_maf_to_interval_0 galaxy.datatypes.registry DEBUG 2024-02-23 13:13:46,116 [pN:main,p:74649,tN:MainThread] Loaded converter: CONVERTER_interval_to_tabix_0 galaxy.datatypes.registry DEBUG 2024-02-23 13:13:46,119 [pN:main,p:74649,tN:MainThread] Loaded converter: CONVERTER_interval_to_bgzip_0 galaxy.datatypes.registry DEBUG 2024-02-23 13:13:46,120 [pN:main,p:74649,tN:MainThread] Loaded converter: CONVERTER_bed_gff_or_vcf_to_bigwig_0 galaxy.datatypes.registry DEBUG 2024-02-23 13:13:46,122 [pN:main,p:74649,tN:MainThread] Loaded converter: CONVERTER_interval_to_bgzip_0 galaxy.datatypes.registry DEBUG 2024-02-23 13:13:46,125 [pN:main,p:74649,tN:MainThread] Loaded converter: CONVERTER_interval_to_tabix_0 galaxy.datatypes.registry DEBUG 2024-02-23 13:13:46,126 [pN:main,p:74649,tN:MainThread] Loaded converter: CONVERTER_sam_to_unsorted_bam galaxy.datatypes.registry DEBUG 2024-02-23 13:13:46,127 [pN:main,p:74649,tN:MainThread] Loaded converter: CONVERTER_bam_to_coodinate_sorted_bam galaxy.datatypes.registry DEBUG 2024-02-23 13:13:46,129 [pN:main,p:74649,tN:MainThread] Loaded converter: CONVERTER_bam_to_qname_sorted_bam galaxy.datatypes.registry DEBUG 2024-02-23 13:13:46,130 [pN:main,p:74649,tN:MainThread] Loaded converter: CONVERTER_sam_to_bigwig_0 galaxy.datatypes.registry DEBUG 2024-02-23 13:13:46,131 [pN:main,p:74649,tN:MainThread] Loaded converter: tabular_to_dbnsfp galaxy.datatypes.registry DEBUG 2024-02-23 13:13:46,132 [pN:main,p:74649,tN:MainThread] Loaded converter: tabular_to_csv galaxy.datatypes.registry DEBUG 2024-02-23 13:13:46,134 [pN:main,p:74649,tN:MainThread] Loaded converter: CONVERTER_uncompressed_to_gz galaxy.datatypes.registry DEBUG 2024-02-23 13:13:46,135 [pN:main,p:74649,tN:MainThread] Loaded converter: CONVERTER_gz_to_uncompressed galaxy.datatypes.registry DEBUG 2024-02-23 13:13:46,138 [pN:main,p:74649,tN:MainThread] Loaded converter: CONVERTER_interval_to_bgzip_0 galaxy.datatypes.registry DEBUG 2024-02-23 13:13:46,139 [pN:main,p:74649,tN:MainThread] Loaded converter: CONVERTER_vcf_to_vcf_bgzip_0 galaxy.datatypes.registry DEBUG 2024-02-23 13:13:46,141 [pN:main,p:74649,tN:MainThread] Loaded converter: CONVERTER_interval_to_tabix_0 galaxy.datatypes.registry DEBUG 2024-02-23 13:13:46,142 [pN:main,p:74649,tN:MainThread] Loaded converter: CONVERTER_bed_gff_or_vcf_to_bigwig_0 galaxy.datatypes.registry DEBUG 2024-02-23 13:13:46,144 [pN:main,p:74649,tN:MainThread] Loaded converter: CONVERTER_uncompressed_to_gz galaxy.datatypes.registry DEBUG 2024-02-23 13:13:46,145 [pN:main,p:74649,tN:MainThread] Loaded converter: CONVERTER_bcf_uncompressed_to_bcf galaxy.datatypes.registry DEBUG 2024-02-23 13:13:46,147 [pN:main,p:74649,tN:MainThread] Loaded converter: CONVERTER_bcf_uncompressed_to_bcf galaxy.datatypes.registry DEBUG 2024-02-23 13:13:46,148 [pN:main,p:74649,tN:MainThread] Loaded converter: CONVERTER_wig_to_bigwig galaxy.datatypes.registry DEBUG 2024-02-23 13:13:46,149 [pN:main,p:74649,tN:MainThread] Loaded converter: CONVERTER_wiggle_to_interval_0 galaxy.datatypes.registry DEBUG 2024-02-23 13:13:46,150 [pN:main,p:74649,tN:MainThread] Loaded converter: CONVERTER_vcf_bgzip_to_tabix_0 galaxy.datatypes.registry DEBUG 2024-02-23 13:13:46,152 [pN:main,p:74649,tN:MainThread] Loaded converter: CONVERTER_gz_to_uncompressed galaxy.datatypes.registry DEBUG 2024-02-23 13:13:46,153 [pN:main,p:74649,tN:MainThread] Loaded converter: lped2fpedconvert galaxy.datatypes.registry DEBUG 2024-02-23 13:13:46,154 [pN:main,p:74649,tN:MainThread] Loaded converter: lped2pbedconvert galaxy.datatypes.registry DEBUG 2024-02-23 13:13:46,154 [pN:main,p:74649,tN:MainThread] Loaded converter: pbed2lpedconvert galaxy.datatypes.registry DEBUG 2024-02-23 13:13:46,155 [pN:main,p:74649,tN:MainThread] Loaded converter: pbed2ldindepconvert galaxy.datatypes.registry DEBUG 2024-02-23 13:13:46,157 [pN:main,p:74649,tN:MainThread] Loaded converter: CONVERTER_uncompressed_to_gz galaxy.datatypes.registry DEBUG 2024-02-23 13:13:46,158 [pN:main,p:74649,tN:MainThread] Loaded converter: CONVERTER_gz_to_uncompressed galaxy.datatypes.registry DEBUG 2024-02-23 13:13:46,160 [pN:main,p:74649,tN:MainThread] Loaded converter: CONVERTER_biom galaxy.datatypes.registry DEBUG 2024-02-23 13:13:46,162 [pN:main,p:74649,tN:MainThread] Loaded converter: CONVERTER_biom galaxy.datatypes.registry DEBUG 2024-02-23 13:13:46,168 [pN:main,p:74649,tN:MainThread] Loaded converter: CONVERTER_molecules galaxy.datatypes.registry DEBUG 2024-02-23 13:13:46,173 [pN:main,p:74649,tN:MainThread] Loaded converter: CONVERTER_molecules galaxy.datatypes.registry DEBUG 2024-02-23 13:13:46,178 [pN:main,p:74649,tN:MainThread] Loaded converter: CONVERTER_molecules galaxy.datatypes.registry DEBUG 2024-02-23 13:13:46,179 [pN:main,p:74649,tN:MainThread] Loaded converter: CONVERTER_SMILES_to_MOL galaxy.datatypes.registry DEBUG 2024-02-23 13:13:46,184 [pN:main,p:74649,tN:MainThread] Loaded converter: CONVERTER_molecules galaxy.datatypes.registry DEBUG 2024-02-23 13:13:46,186 [pN:main,p:74649,tN:MainThread] Loaded converter: CONVERTER_smiles_to_smiles galaxy.datatypes.registry DEBUG 2024-02-23 13:13:46,191 [pN:main,p:74649,tN:MainThread] Loaded converter: CONVERTER_molecules galaxy.datatypes.registry DEBUG 2024-02-23 13:13:46,196 [pN:main,p:74649,tN:MainThread] Loaded converter: CONVERTER_molecules galaxy.datatypes.registry DEBUG 2024-02-23 13:13:46,201 [pN:main,p:74649,tN:MainThread] Loaded converter: CONVERTER_molecules galaxy.datatypes.registry DEBUG 2024-02-23 13:13:46,206 [pN:main,p:74649,tN:MainThread] Loaded converter: CONVERTER_molecules galaxy.datatypes.registry DEBUG 2024-02-23 13:13:46,212 [pN:main,p:74649,tN:MainThread] Loaded converter: CONVERTER_molecules galaxy.datatypes.registry DEBUG 2024-02-23 13:13:46,217 [pN:main,p:74649,tN:MainThread] Loaded converter: CONVERTER_molecules galaxy.datatypes.registry DEBUG 2024-02-23 13:13:46,218 [pN:main,p:74649,tN:MainThread] Loaded converter: CONVERTER_inchi_to_mol galaxy.datatypes.registry DEBUG 2024-02-23 13:13:46,223 [pN:main,p:74649,tN:MainThread] Loaded converter: CONVERTER_molecules galaxy.datatypes.registry DEBUG 2024-02-23 13:13:46,228 [pN:main,p:74649,tN:MainThread] Loaded converter: CONVERTER_molecules galaxy.datatypes.registry DEBUG 2024-02-23 13:13:46,234 [pN:main,p:74649,tN:MainThread] Loaded converter: CONVERTER_molecules galaxy.datatypes.registry DEBUG 2024-02-23 13:13:46,239 [pN:main,p:74649,tN:MainThread] Loaded converter: CONVERTER_molecules galaxy.datatypes.registry DEBUG 2024-02-23 13:13:46,244 [pN:main,p:74649,tN:MainThread] Loaded converter: CONVERTER_molecules galaxy.datatypes.registry DEBUG 2024-02-23 13:13:46,249 [pN:main,p:74649,tN:MainThread] Loaded converter: CONVERTER_molecules galaxy.datatypes.registry DEBUG 2024-02-23 13:13:46,254 [pN:main,p:74649,tN:MainThread] Loaded converter: CONVERTER_molecules galaxy.datatypes.registry DEBUG 2024-02-23 13:13:46,260 [pN:main,p:74649,tN:MainThread] Loaded converter: CONVERTER_molecules galaxy.datatypes.registry DEBUG 2024-02-23 13:13:46,265 [pN:main,p:74649,tN:MainThread] Loaded converter: CONVERTER_molecules galaxy.datatypes.registry DEBUG 2024-02-23 13:13:46,270 [pN:main,p:74649,tN:MainThread] Loaded converter: CONVERTER_molecules galaxy.datatypes.registry DEBUG 2024-02-23 13:13:46,271 [pN:main,p:74649,tN:MainThread] Loaded converter: CONVERTER_mol2_to_mol galaxy.datatypes.registry DEBUG 2024-02-23 13:13:46,277 [pN:main,p:74649,tN:MainThread] Loaded converter: CONVERTER_molecules galaxy.datatypes.registry DEBUG 2024-02-23 13:13:46,278 [pN:main,p:74649,tN:MainThread] Loaded converter: CONVERTER_cml_to_smiles galaxy.datatypes.registry DEBUG 2024-02-23 13:13:46,283 [pN:main,p:74649,tN:MainThread] Loaded converter: CONVERTER_molecules galaxy.datatypes.registry DEBUG 2024-02-23 13:13:46,288 [pN:main,p:74649,tN:MainThread] Loaded converter: CONVERTER_molecules galaxy.datatypes.registry DEBUG 2024-02-23 13:13:46,294 [pN:main,p:74649,tN:MainThread] Loaded converter: CONVERTER_molecules galaxy.datatypes.registry DEBUG 2024-02-23 13:13:46,295 [pN:main,p:74649,tN:MainThread] Loaded converter: CONVERTER_Pdb_to_Gro_0 galaxy.datatypes.registry DEBUG 2024-02-23 13:13:46,297 [pN:main,p:74649,tN:MainThread] Loaded converter: CONVERTER_mdconvert galaxy.datatypes.registry DEBUG 2024-02-23 13:13:46,299 [pN:main,p:74649,tN:MainThread] Loaded converter: CONVERTER_mdconvert galaxy.datatypes.registry DEBUG 2024-02-23 13:13:46,301 [pN:main,p:74649,tN:MainThread] Loaded converter: CONVERTER_mdconvert galaxy.datatypes.registry DEBUG 2024-02-23 13:13:46,303 [pN:main,p:74649,tN:MainThread] Loaded converter: CONVERTER_mdconvert galaxy.datatypes.registry DEBUG 2024-02-23 13:13:46,305 [pN:main,p:74649,tN:MainThread] Loaded converter: CONVERTER_mdconvert galaxy.datatypes.registry DEBUG 2024-02-23 13:13:46,307 [pN:main,p:74649,tN:MainThread] Loaded converter: CONVERTER_mdconvert galaxy.datatypes.registry DEBUG 2024-02-23 13:13:46,308 [pN:main,p:74649,tN:MainThread] Loaded converter: CONVERTER_Gro_to_Pdb_0 galaxy.datatypes.registry DEBUG 2024-02-23 13:13:46,310 [pN:main,p:74649,tN:MainThread] Loaded converter: CONVERTER_ref_to_seq_taxomony galaxy.datatypes.registry DEBUG 2024-02-23 13:13:46,311 [pN:main,p:74649,tN:MainThread] Loaded converter: CONVERTER_neostorezip_to_neostore galaxy.datatypes.registry DEBUG 2024-02-23 13:13:46,312 [pN:main,p:74649,tN:MainThread] Loaded external metadata tool: __SET_METADATA__ galaxy.tools.special_tools DEBUG 2024-02-23 13:13:46,314 [pN:main,p:74649,tN:MainThread] Loaded history export tool: __EXPORT_HISTORY__ galaxy.tools.special_tools DEBUG 2024-02-23 13:13:46,315 [pN:main,p:74649,tN:MainThread] Loaded history export to uri tool: __EXPORT_HISTORY_TO_URI__ galaxy.tools.special_tools DEBUG 2024-02-23 13:13:46,316 [pN:main,p:74649,tN:MainThread] Loaded history import tool: __IMPORT_HISTORY__ galaxy.tools.special_tools DEBUG 2024-02-23 13:13:46,317 [pN:main,p:74649,tN:MainThread] Loaded data fetch tool: __DATA_FETCH__ galaxy.visualization.plugins.registry INFO 2024-02-23 13:13:46,318 [pN:main,p:74649,tN:MainThread] VisualizationsRegistry, loaded plugin: PCA_3Dplot galaxy.visualization.plugins.registry INFO 2024-02-23 13:13:46,319 [pN:main,p:74649,tN:MainThread] VisualizationsRegistry, loaded plugin: aequatus galaxy.visualization.plugins.registry INFO 2024-02-23 13:13:46,320 [pN:main,p:74649,tN:MainThread] VisualizationsRegistry, loaded plugin: annotate_image galaxy.visualization.plugins.config_parser INFO 2024-02-23 13:13:46,321 [pN:main,p:74649,tN:MainThread] template syntax is deprecated: use entry_point instead galaxy.visualization.plugins.registry INFO 2024-02-23 13:13:46,321 [pN:main,p:74649,tN:MainThread] VisualizationsRegistry, loaded plugin: chiraviz galaxy.visualization.plugins.config_parser INFO 2024-02-23 13:13:46,322 [pN:main,p:74649,tN:MainThread] Visualizations plugin disabled: Circster. Skipping... galaxy.visualization.plugins.config_parser INFO 2024-02-23 13:13:46,322 [pN:main,p:74649,tN:MainThread] template syntax is deprecated: use entry_point instead galaxy.visualization.plugins.registry INFO 2024-02-23 13:13:46,322 [pN:main,p:74649,tN:MainThread] VisualizationsRegistry, loaded plugin: csg galaxy.visualization.plugins.registry INFO 2024-02-23 13:13:46,323 [pN:main,p:74649,tN:MainThread] VisualizationsRegistry, loaded plugin: cytoscape galaxy.visualization.plugins.registry INFO 2024-02-23 13:13:46,325 [pN:main,p:74649,tN:MainThread] VisualizationsRegistry, loaded plugin: drawrna galaxy.visualization.plugins.registry INFO 2024-02-23 13:13:46,326 [pN:main,p:74649,tN:MainThread] VisualizationsRegistry, loaded plugin: editor galaxy.visualization.plugins.registry INFO 2024-02-23 13:13:46,327 [pN:main,p:74649,tN:MainThread] VisualizationsRegistry, loaded plugin: example galaxy.visualization.plugins.config_parser INFO 2024-02-23 13:13:46,328 [pN:main,p:74649,tN:MainThread] template syntax is deprecated: use entry_point instead galaxy.visualization.plugins.registry INFO 2024-02-23 13:13:46,328 [pN:main,p:74649,tN:MainThread] VisualizationsRegistry, loaded plugin: fits_image_viewer galaxy.visualization.plugins.config_parser INFO 2024-02-23 13:13:46,329 [pN:main,p:74649,tN:MainThread] template syntax is deprecated: use entry_point instead galaxy.visualization.plugins.registry INFO 2024-02-23 13:13:46,329 [pN:main,p:74649,tN:MainThread] VisualizationsRegistry, loaded plugin: graphviz galaxy.visualization.plugins.registry INFO 2024-02-23 13:13:46,330 [pN:main,p:74649,tN:MainThread] VisualizationsRegistry, loaded plugin: h5web galaxy.visualization.plugins.registry INFO 2024-02-23 13:13:46,332 [pN:main,p:74649,tN:MainThread] VisualizationsRegistry, loaded plugin: heatmap_cluster galaxy.visualization.plugins.registry INFO 2024-02-23 13:13:46,335 [pN:main,p:74649,tN:MainThread] VisualizationsRegistry, loaded plugin: heatmap_default galaxy.visualization.plugins.config_parser INFO 2024-02-23 13:13:46,335 [pN:main,p:74649,tN:MainThread] template syntax is deprecated: use entry_point instead galaxy.visualization.plugins.registry INFO 2024-02-23 13:13:46,335 [pN:main,p:74649,tN:MainThread] VisualizationsRegistry, loaded plugin: hivtrace galaxy.visualization.plugins.config_parser INFO 2024-02-23 13:13:46,336 [pN:main,p:74649,tN:MainThread] template syntax is deprecated: use entry_point instead galaxy.visualization.plugins.registry INFO 2024-02-23 13:13:46,336 [pN:main,p:74649,tN:MainThread] VisualizationsRegistry, loaded plugin: hyphyvision galaxy.visualization.plugins.registry INFO 2024-02-23 13:13:46,338 [pN:main,p:74649,tN:MainThread] VisualizationsRegistry, loaded plugin: jqplot_bar galaxy.visualization.plugins.registry INFO 2024-02-23 13:13:46,340 [pN:main,p:74649,tN:MainThread] VisualizationsRegistry, loaded plugin: jqplot_box galaxy.visualization.plugins.registry INFO 2024-02-23 13:13:46,342 [pN:main,p:74649,tN:MainThread] VisualizationsRegistry, loaded plugin: jqplot_histogram galaxy.visualization.plugins.registry INFO 2024-02-23 13:13:46,345 [pN:main,p:74649,tN:MainThread] VisualizationsRegistry, loaded plugin: jqplot_line galaxy.visualization.plugins.registry INFO 2024-02-23 13:13:46,347 [pN:main,p:74649,tN:MainThread] VisualizationsRegistry, loaded plugin: jqplot_scatter galaxy.visualization.plugins.config_parser INFO 2024-02-23 13:13:46,347 [pN:main,p:74649,tN:MainThread] template syntax is deprecated: use entry_point instead galaxy.visualization.plugins.registry INFO 2024-02-23 13:13:46,347 [pN:main,p:74649,tN:MainThread] VisualizationsRegistry, loaded plugin: audio_player galaxy.visualization.plugins.config_parser INFO 2024-02-23 13:13:46,348 [pN:main,p:74649,tN:MainThread] template syntax is deprecated: use entry_point instead galaxy.visualization.plugins.registry INFO 2024-02-23 13:13:46,348 [pN:main,p:74649,tN:MainThread] VisualizationsRegistry, loaded plugin: video_player galaxy.visualization.plugins.registry INFO 2024-02-23 13:13:46,348 [pN:main,p:74649,tN:MainThread] VisualizationsRegistry, loaded plugin: msa galaxy.visualization.plugins.config_parser INFO 2024-02-23 13:13:46,350 [pN:main,p:74649,tN:MainThread] template syntax is deprecated: use entry_point instead galaxy.visualization.plugins.registry INFO 2024-02-23 13:13:46,350 [pN:main,p:74649,tN:MainThread] VisualizationsRegistry, loaded plugin: mvpapp galaxy.visualization.plugins.registry INFO 2024-02-23 13:13:46,351 [pN:main,p:74649,tN:MainThread] VisualizationsRegistry, loaded plugin: ngl galaxy.visualization.plugins.registry INFO 2024-02-23 13:13:46,352 [pN:main,p:74649,tN:MainThread] VisualizationsRegistry, loaded plugin: nora galaxy.visualization.plugins.registry INFO 2024-02-23 13:13:46,355 [pN:main,p:74649,tN:MainThread] VisualizationsRegistry, loaded plugin: nvd3_bar galaxy.visualization.plugins.registry INFO 2024-02-23 13:13:46,357 [pN:main,p:74649,tN:MainThread] VisualizationsRegistry, loaded plugin: nvd3_bar_stacked galaxy.visualization.plugins.registry INFO 2024-02-23 13:13:46,359 [pN:main,p:74649,tN:MainThread] VisualizationsRegistry, loaded plugin: nvd3_histogram galaxy.visualization.plugins.registry INFO 2024-02-23 13:13:46,361 [pN:main,p:74649,tN:MainThread] VisualizationsRegistry, loaded plugin: nvd3_histogram_discrete galaxy.visualization.plugins.registry INFO 2024-02-23 13:13:46,363 [pN:main,p:74649,tN:MainThread] VisualizationsRegistry, loaded plugin: nvd3_horizontal galaxy.visualization.plugins.registry INFO 2024-02-23 13:13:46,365 [pN:main,p:74649,tN:MainThread] VisualizationsRegistry, loaded plugin: nvd3_horizontal_stacked galaxy.visualization.plugins.registry INFO 2024-02-23 13:13:46,367 [pN:main,p:74649,tN:MainThread] VisualizationsRegistry, loaded plugin: nvd3_line galaxy.visualization.plugins.registry INFO 2024-02-23 13:13:46,369 [pN:main,p:74649,tN:MainThread] VisualizationsRegistry, loaded plugin: nvd3_line_focus galaxy.visualization.plugins.registry INFO 2024-02-23 13:13:46,371 [pN:main,p:74649,tN:MainThread] VisualizationsRegistry, loaded plugin: nvd3_pie galaxy.visualization.plugins.registry INFO 2024-02-23 13:13:46,373 [pN:main,p:74649,tN:MainThread] VisualizationsRegistry, loaded plugin: nvd3_scatter galaxy.visualization.plugins.registry INFO 2024-02-23 13:13:46,375 [pN:main,p:74649,tN:MainThread] VisualizationsRegistry, loaded plugin: nvd3_stackedarea galaxy.visualization.plugins.registry INFO 2024-02-23 13:13:46,377 [pN:main,p:74649,tN:MainThread] VisualizationsRegistry, loaded plugin: nvd3_stackedarea_full galaxy.visualization.plugins.registry INFO 2024-02-23 13:13:46,379 [pN:main,p:74649,tN:MainThread] VisualizationsRegistry, loaded plugin: nvd3_stackedarea_stream galaxy.visualization.plugins.registry INFO 2024-02-23 13:13:46,380 [pN:main,p:74649,tN:MainThread] VisualizationsRegistry, loaded plugin: openlayers galaxy.visualization.plugins.registry INFO 2024-02-23 13:13:46,381 [pN:main,p:74649,tN:MainThread] VisualizationsRegistry, loaded plugin: openseadragon galaxy.visualization.plugins.registry INFO 2024-02-23 13:13:46,382 [pN:main,p:74649,tN:MainThread] VisualizationsRegistry, loaded plugin: phylocanvas galaxy.visualization.plugins.registry INFO 2024-02-23 13:13:46,383 [pN:main,p:74649,tN:MainThread] VisualizationsRegistry, loaded plugin: phyloviz galaxy.visualization.plugins.registry INFO 2024-02-23 13:13:46,384 [pN:main,p:74649,tN:MainThread] VisualizationsRegistry, loaded plugin: pv galaxy.visualization.plugins.registry INFO 2024-02-23 13:13:46,385 [pN:main,p:74649,tN:MainThread] VisualizationsRegistry, loaded plugin: scatterplot galaxy.visualization.plugins.config_parser INFO 2024-02-23 13:13:46,386 [pN:main,p:74649,tN:MainThread] Visualizations plugin disabled: Sweepster. Skipping... galaxy.visualization.plugins.registry INFO 2024-02-23 13:13:46,386 [pN:main,p:74649,tN:MainThread] VisualizationsRegistry, loaded plugin: trackster galaxy.visualization.plugins.registry INFO 2024-02-23 13:13:46,387 [pN:main,p:74649,tN:MainThread] VisualizationsRegistry, loaded plugin: ts_visjs galaxy.visualization.plugins.config_parser INFO 2024-02-23 13:13:46,387 [pN:main,p:74649,tN:MainThread] template syntax is deprecated: use entry_point instead galaxy.visualization.plugins.registry INFO 2024-02-23 13:13:46,387 [pN:main,p:74649,tN:MainThread] VisualizationsRegistry, loaded plugin: unipept galaxy.visualization.plugins.registry INFO 2024-02-23 13:13:46,388 [pN:main,p:74649,tN:MainThread] VisualizationsRegistry, loaded plugin: venn galaxy.tours._impl INFO 2024-02-23 13:13:46,412 [pN:main,p:74649,tN:MainThread] Loaded tour 'core.galaxy_ui' galaxy.tours._impl INFO 2024-02-23 13:13:46,429 [pN:main,p:74649,tN:MainThread] Loaded tour 'core.deferred' galaxy.tours._impl INFO 2024-02-23 13:13:46,441 [pN:main,p:74649,tN:MainThread] Loaded tour 'core.history' galaxy.tours._impl INFO 2024-02-23 13:13:46,452 [pN:main,p:74649,tN:MainThread] Loaded tour 'core.windows' galaxy.workflow.scheduling_manager INFO 2024-02-23 13:13:46,458 [pN:main,p:74649,tN:MainThread] No workflow schedulers plugin config file defined, using default scheduler. galaxy.web_stack.handlers INFO 2024-02-23 13:13:46,458 [pN:main,p:74649,tN:MainThread] WorkflowSchedulingManager: No job handler assignment method is set, defaulting to 'HANDLER_ASSIGNMENT_METHODS.DB_SKIP_LOCKED', set the `assign_with` attribute on <handlers> to override the default galaxy.workflow.scheduling_manager DEBUG 2024-02-23 13:13:46,458 [pN:main,p:74649,tN:MainThread] Starting workflow schedulers galaxy.app INFO 2024-02-23 13:13:46,461 [pN:main,p:74649,tN:MainThread] Galaxy app startup finished (3665.046 ms) galaxy.web.framework.base DEBUG 2024-02-23 13:13:46,488 [pN:main,p:74649,tN:MainThread] Enabling 'user' controller, class: User galaxy.web.framework.base DEBUG 2024-02-23 13:13:46,489 [pN:main,p:74649,tN:MainThread] Enabling 'data_manager' controller, class: DataManager galaxy.web.framework.base DEBUG 2024-02-23 13:13:46,489 [pN:main,p:74649,tN:MainThread] Enabling 'async' controller, class: ASync galaxy.web.framework.base DEBUG 2024-02-23 13:13:46,490 [pN:main,p:74649,tN:MainThread] Enabling 'tag' controller, class: TagsController galaxy.web.framework.base DEBUG 2024-02-23 13:13:46,495 [pN:main,p:74649,tN:MainThread] Enabling 'page' controller, class: PageController galaxy.web.framework.base DEBUG 2024-02-23 13:13:46,496 [pN:main,p:74649,tN:MainThread] Enabling 'root' controller, class: RootController galaxy.web.framework.base DEBUG 2024-02-23 13:13:46,496 [pN:main,p:74649,tN:MainThread] Enabling 'tool_runner' controller, class: ToolRunner galaxy.web.framework.base DEBUG 2024-02-23 13:13:46,497 [pN:main,p:74649,tN:MainThread] Enabling 'error' controller, class: Error galaxy.web.framework.base DEBUG 2024-02-23 13:13:46,497 [pN:main,p:74649,tN:MainThread] Enabling 'forms' controller, class: Forms galaxy.web.framework.base DEBUG 2024-02-23 13:13:46,512 [pN:main,p:74649,tN:MainThread] Enabling 'admin_toolshed' controller, class: AdminGalaxy galaxy.web.framework.base DEBUG 2024-02-23 13:13:46,512 [pN:main,p:74649,tN:MainThread] Enabling 'admin_toolshed' controller, class: AdminToolshed galaxy.web.framework.base DEBUG 2024-02-23 13:13:46,514 [pN:main,p:74649,tN:MainThread] Enabling 'visualization' controller, class: VisualizationController galaxy.web.framework.base DEBUG 2024-02-23 13:13:46,514 [pN:main,p:74649,tN:MainThread] Enabling 'shed_tool_static' controller, class: ShedToolStatic galaxy.web.framework.base DEBUG 2024-02-23 13:13:46,515 [pN:main,p:74649,tN:MainThread] Enabling 'authnz' controller, class: JSAppLauncher galaxy.web.framework.base DEBUG 2024-02-23 13:13:46,515 [pN:main,p:74649,tN:MainThread] Enabling 'authnz' controller, class: OIDC galaxy.web.framework.base DEBUG 2024-02-23 13:13:46,517 [pN:main,p:74649,tN:MainThread] Enabling 'workflow' controller, class: WorkflowController galaxy.web.framework.base DEBUG 2024-02-23 13:13:46,518 [pN:main,p:74649,tN:MainThread] Enabling 'history' controller, class: HistoryController galaxy.web.framework.base DEBUG 2024-02-23 13:13:46,548 [pN:main,p:74649,tN:MainThread] Enabling 'dataset' controller, class: DatasetInterface galaxy.web.framework.base DEBUG 2024-02-23 13:13:46,548 [pN:main,p:74649,tN:MainThread] Enabling 'admin' controller, class: AdminGalaxy galaxy.web.framework.base DEBUG 2024-02-23 13:13:47,269 [pN:main,p:74649,tN:MainThread] Enabling 'library_datasets' API controller, class: LibraryDatasetsController galaxy.web.framework.base DEBUG 2024-02-23 13:13:47,423 [pN:main,p:74649,tN:MainThread] Enabling 'jobs' API controller, class: JobController galaxy.web.framework.base DEBUG 2024-02-23 13:13:47,544 [pN:main,p:74649,tN:MainThread] Enabling 'job_files' API controller, class: JobFilesAPIController galaxy.web.framework.base DEBUG 2024-02-23 13:13:47,592 [pN:main,p:74649,tN:MainThread] Enabling 'toolshed' API controller, class: ToolShedController galaxy.web.framework.base DEBUG 2024-02-23 13:13:47,608 [pN:main,p:74649,tN:MainThread] Enabling 'tools' API controller, class: ToolsController galaxy.web.framework.base DEBUG 2024-02-23 13:13:47,730 [pN:main,p:74649,tN:MainThread] Enabling 'trs_consumer' API controller, class: TrsConsumeAPIController galaxy.web.framework.base DEBUG 2024-02-23 13:13:47,731 [pN:main,p:74649,tN:MainThread] Enabling 'history_dataset_extended_metadata' API controller, class: HistoryDatasetExtendMetadataController galaxy.web.framework.base DEBUG 2024-02-23 13:13:47,731 [pN:main,p:74649,tN:MainThread] Enabling 'library_dataset_extended_metadata' API controller, class: LibraryDatasetExtendMetadataController galaxy.web.framework.base DEBUG 2024-02-23 13:13:47,731 [pN:main,p:74649,tN:MainThread] Enabling 'container_resolution' API controller, class: ContainerResolutionAPIController galaxy.web.framework.base DEBUG 2024-02-23 13:13:47,732 [pN:main,p:74649,tN:MainThread] Enabling 'job_ports' API controller, class: JobPortsAPIController galaxy.web.framework.base DEBUG 2024-02-23 13:13:47,733 [pN:main,p:74649,tN:MainThread] Enabling 'tool_dependencies' API controller, class: ToolDependenciesAPIController galaxy.web.framework.base DEBUG 2024-02-23 13:13:47,874 [pN:main,p:74649,tN:MainThread] Enabling 'history_content_provenance' API controller, class: HDAProvenanceController galaxy.web.framework.base DEBUG 2024-02-23 13:13:47,874 [pN:main,p:74649,tN:MainThread] Enabling 'ldda_provenance' API controller, class: LDDAProvenanceController galaxy.web.framework.base DEBUG 2024-02-23 13:13:47,874 [pN:main,p:74649,tN:MainThread] Enabling 'tool_entry_points' API controller, class: ToolEntryPointsAPIController galaxy.web.framework.base DEBUG 2024-02-23 13:13:48,009 [pN:main,p:74649,tN:MainThread] Enabling 'authenticate' API controller, class: AuthenticationController galaxy.web.framework.base DEBUG 2024-02-23 13:13:48,424 [pN:main,p:74649,tN:MainThread] Enabling 'trs_search' API controller, class: TrsSearchAPIController galaxy.web.framework.base DEBUG 2024-02-23 13:13:48,477 [pN:main,p:74649,tN:MainThread] Enabling 'tool_shed_repositories' API controller, class: ToolShedRepositoriesController galaxy.web.framework.base DEBUG 2024-02-23 13:13:48,666 [pN:main,p:74649,tN:MainThread] Enabling 'forms' API controller, class: FormDefinitionAPIController galaxy.web.framework.base DEBUG 2024-02-23 13:13:48,947 [pN:main,p:74649,tN:MainThread] Enabling 'workflows' API controller, class: WorkflowsAPIController galaxy.web.framework.base DEBUG 2024-02-23 13:13:48,947 [pN:main,p:74649,tN:MainThread] Enabling 'uploads' API controller, class: UploadsAPIController galaxy.web.framework.base DEBUG 2024-02-23 13:13:49,744 [pN:main,p:74649,tN:MainThread] Enabling 'history_annotations' API controller, class: HistoryAnnotationsController galaxy.web.framework.base DEBUG 2024-02-23 13:13:49,744 [pN:main,p:74649,tN:MainThread] Enabling 'history_content_annotations' API controller, class: HistoryContentAnnotationsController galaxy.web.framework.base DEBUG 2024-02-23 13:13:49,744 [pN:main,p:74649,tN:MainThread] Enabling 'workflow_annotations' API controller, class: WorkflowAnnotationsController galaxy.web.framework.base DEBUG 2024-02-23 13:13:49,818 [pN:main,p:74649,tN:MainThread] Enabling 'visualizations' API controller, class: VisualizationsController galaxy.web.framework.base DEBUG 2024-02-23 13:13:49,818 [pN:main,p:74649,tN:MainThread] Enabling 'sanitize_allow' API controller, class: SanitizeAllowController galaxy.web.framework.base DEBUG 2024-02-23 13:13:49,819 [pN:main,p:74649,tN:MainThread] Enabling 'page_revisions' API controller, class: PageRevisionsController galaxy.web.framework.base DEBUG 2024-02-23 13:13:49,913 [pN:main,p:74649,tN:MainThread] Enabling 'library_contents' API controller, class: LibraryContentsController galaxy.web.framework.base DEBUG 2024-02-23 13:13:50,034 [pN:main,p:74649,tN:MainThread] Enabling 'users' API controller, class: UserAPIController galaxy.web.framework.base DEBUG 2024-02-23 13:13:50,034 [pN:main,p:74649,tN:MainThread] Enabling 'cloudauthz' API controller, class: CloudAuthzController galaxy.web.framework.base DEBUG 2024-02-23 13:13:50,035 [pN:main,p:74649,tN:MainThread] Enabling 'webhooks' API controller, class: WebhooksController galaxy.web.framework.base DEBUG 2024-02-23 13:13:50,109 [pN:main,p:74649,tN:MainThread] Enabling 'plugins' API controller, class: PluginsController galaxy.web.framework.base DEBUG 2024-02-23 13:13:50,147 [pN:main,p:74649,tN:MainThread] Enabling 'dynamic_tools' API controller, class: DynamicToolsController galaxy.webapps.util DEBUG 2024-02-23 13:13:50,430 [pN:main,p:74649,tN:MainThread] Enabling 'paste.httpexceptions' middleware galaxy.webapps.util DEBUG 2024-02-23 13:13:50,430 [pN:main,p:74649,tN:MainThread] Enabling 'RemoteUser' middleware galaxy.webapps.util DEBUG 2024-02-23 13:13:50,430 [pN:main,p:74649,tN:MainThread] Enabling 'ErrorMiddleware' middleware galaxy.webapps.util DEBUG 2024-02-23 13:13:50,430 [pN:main,p:74649,tN:MainThread] Enabling 'TusMiddleware' middleware galaxy.webapps.util DEBUG 2024-02-23 13:13:50,430 [pN:main,p:74649,tN:MainThread] Enabling 'XForwardedHostMiddleware' middleware galaxy.webapps.util DEBUG 2024-02-23 13:13:50,430 [pN:main,p:74649,tN:MainThread] Enabling 'RequestIDMiddleware' middleware galaxy.webapps.util DEBUG 2024-02-23 13:13:50,430 [pN:main,p:74649,tN:MainThread] Enabling 'build_url_map' middleware galaxy.webapps.galaxy.buildapp DEBUG 2024-02-23 13:13:50,431 [pN:main,p:74649,tN:MainThread] Prior to webapp return, Galaxy thread <_MainThread(MainThread, started 140550736676672)> is alive. galaxy.web_stack DEBUG 2024-02-23 13:13:52,070 [pN:main.1,p:74853,tN:Thread-2] server_name set to: main.1 galaxy.jobs.manager DEBUG 2024-02-23 13:13:52,080 [pN:main.1,p:74853,tN:Thread-2] Initializing job handler galaxy.jobs INFO 2024-02-23 13:13:52,080 [pN:main.1,p:74853,tN:Thread-2] Handler 'main.1' will load all configured runner plugins galaxy.jobs.runners.state_handler_factory DEBUG 2024-02-23 13:13:52,087 [pN:main.1,p:74853,tN:Thread-2] Loaded 'failure' state handler from module galaxy.jobs.runners.state_handlers.resubmit galaxy.jobs DEBUG 2024-02-23 13:13:52,087 [pN:main.1,p:74853,tN:Thread-2] Loaded job runner 'galaxy.jobs.runners.local:LocalJobRunner' as 'local' galaxy.jobs.handler DEBUG 2024-02-23 13:13:52,088 [pN:main.1,p:74853,tN:Thread-2] Loaded job runners plugins: local galaxy.jobs.runners DEBUG 2024-02-23 13:13:52,089 [pN:main.1,p:74853,tN:Thread-2] Starting 4 LocalRunner workers galaxy.jobs.handler DEBUG 2024-02-23 13:13:52,105 [pN:main.1,p:74853,tN:Thread-2] Handler queue starting for jobs assigned to handler: main.1 galaxy.jobs.handler INFO 2024-02-23 13:13:52,130 [pN:main.1,p:74853,tN:JobHandlerQueue.monitor_thread] Handler job grabber initialized with 'HANDLER_ASSIGNMENT_METHODS.DB_SKIP_LOCKED' assignment method for handler 'main.1', tag(s): galaxy.jobs.handler INFO 2024-02-23 13:13:52,130 [pN:main.1,p:74853,tN:Thread-2] job handler queue started galaxy.jobs.handler INFO 2024-02-23 13:13:52,135 [pN:main.1,p:74853,tN:Thread-2] job handler stop queue started galaxy.jobs.handler INFO 2024-02-23 13:13:52,138 [pN:main.1,p:74853,tN:WorkflowRequestMonitor.monitor_thread] Handler job grabber initialized with 'HANDLER_ASSIGNMENT_METHODS.DB_SKIP_LOCKED' assignment method for handler 'main.1', tag(s): None, _default_ galaxy.queue_worker INFO 2024-02-23 13:13:52,143 [pN:main.1,p:74853,tN:Thread-2] Binding and starting galaxy control worker for main.1 galaxy.queue_worker DEBUG 2024-02-23 13:13:52,158 [pN:main.1,p:74853,tN:Thread-2] Executing toolbox reload on 'main.1' galaxy.util WARNING 2024-02-23 13:13:52,165 [pN:main.1,p:74853,tN:Thread-2] directory not found: /scratch/rico/galaxy/lib/galaxy/util/../../../config/plugins/activities galaxy.tools WARNING 2024-02-23 13:13:52,166 [pN:main.1,p:74853,tN:Thread-2] The default shed tool config file (/tmp/tmpj6ure7bs/shed_tool_conf.xml) has been added to the tool_config_file option, if this is not the desired behavior, please set shed_tool_config_file to your primary shed-enabled tool config file galaxy.tool_util.toolbox.base INFO 2024-02-23 13:13:52,166 [pN:main.1,p:74853,tN:Thread-2] Parsing the tool configuration /tmp/tmpj6ure7bs/tool_conf.xml galaxy.tool_util.toolbox.base DEBUG 2024-02-23 13:13:52,166 [pN:main.1,p:74853,tN:Thread-2] Tool path for tool configuration /tmp/tmpj6ure7bs/tool_conf.xml is None galaxy.tools WARNING 2024-02-23 13:13:52,167 [pN:main.1,p:74853,tN:Thread-2] The default shed tool config file (/tmp/tmpj6ure7bs/shed_tool_conf.xml) has been added to the tool_config_file option, if this is not the desired behavior, please set shed_tool_config_file to your primary shed-enabled tool config file galaxy.tool_util.toolbox.base INFO 2024-02-23 13:13:52,167 [pN:main.1,p:74853,tN:Thread-2] Parsing the tool configuration /tmp/tmpj6ure7bs/shed_tools_conf.xml galaxy.tool_util.toolbox.base DEBUG 2024-02-23 13:13:52,167 [pN:main.1,p:74853,tN:Thread-2] Tool path for shed tool configuration /tmp/tmpj6ure7bs/shed_tools_conf.xml is /tmp/tmpj6ure7bs/shed_tools galaxy.tools WARNING 2024-02-23 13:13:52,167 [pN:main.1,p:74853,tN:Thread-2] The default shed tool config file (/tmp/tmpj6ure7bs/shed_tool_conf.xml) has been added to the tool_config_file option, if this is not the desired behavior, please set shed_tool_config_file to your primary shed-enabled tool config file galaxy.tool_util.toolbox.base INFO 2024-02-23 13:13:52,167 [pN:main.1,p:74853,tN:Thread-2] Parsing the tool configuration /tmp/tmpj6ure7bs/empty_tool_conf.xml galaxy.tool_util.toolbox.base DEBUG 2024-02-23 13:13:52,168 [pN:main.1,p:74853,tN:Thread-2] Tool path for tool configuration /tmp/tmpj6ure7bs/empty_tool_conf.xml is None galaxy.tool_util.toolbox.base DEBUG 2024-02-23 13:13:52,168 [pN:main.1,p:74853,tN:Thread-2] Reading tools from config files finished (2.113 ms) galaxy.tool_util.toolbox.base DEBUG 2024-02-23 13:13:52,168 [pN:main.1,p:74853,tN:Thread-2] Loaded tool id: upload1, version: 1.1.7 into tool panel.. galaxy.tool_util.toolbox.base DEBUG 2024-02-23 13:13:52,168 [pN:main.1,p:74853,tN:Thread-2] Loading tool panel finished (0.446 ms) galaxy.tool_util.toolbox.base DEBUG 2024-02-23 13:13:52,173 [pN:main.1,p:74853,tN:Thread-2] Loaded tool id: upload1, version: 1.1.7 into tool panel.. galaxy.tool_util.toolbox.views.edam DEBUG 2024-02-23 13:13:52,173 [pN:main.1,p:74853,tN:Thread-2] Loading EDAM tool panel finished (4.446 ms) galaxy.tool_util.toolbox.base DEBUG 2024-02-23 13:13:52,175 [pN:main.1,p:74853,tN:Thread-2] Loaded tool id: upload1, version: 1.1.7 into tool panel.. galaxy.tool_util.toolbox.views.edam DEBUG 2024-02-23 13:13:52,175 [pN:main.1,p:74853,tN:Thread-2] Loading EDAM tool panel finished (2.077 ms) galaxy.datatypes.registry DEBUG 2024-02-23 13:13:52,176 [pN:main.1,p:74853,tN:Thread-2] Loaded converter: CONVERTER_uncompressed_to_gz galaxy.datatypes.registry DEBUG 2024-02-23 13:13:52,176 [pN:main.1,p:74853,tN:Thread-2] Loaded converter: CONVERTER_gz_to_uncompressed galaxy.datatypes.registry DEBUG 2024-02-23 13:13:52,176 [pN:main.1,p:74853,tN:Thread-2] Loaded converter: CONVERTER_uncompressed_to_gz galaxy.datatypes.registry DEBUG 2024-02-23 13:13:52,177 [pN:main.1,p:74853,tN:Thread-2] Loaded converter: CONVERTER_gz_to_uncompressed galaxy.datatypes.registry DEBUG 2024-02-23 13:13:52,177 [pN:main.1,p:74853,tN:Thread-2] Loaded converter: CONVERTER_uncompressed_to_gz galaxy.datatypes.registry DEBUG 2024-02-23 13:13:52,177 [pN:main.1,p:74853,tN:Thread-2] Loaded converter: CONVERTER_gz_to_uncompressed galaxy.datatypes.registry DEBUG 2024-02-23 13:13:52,177 [pN:main.1,p:74853,tN:Thread-2] Loaded converter: CONVERTER_Bam_Bai_0 galaxy.datatypes.registry DEBUG 2024-02-23 13:13:52,177 [pN:main.1,p:74853,tN:Thread-2] Loaded converter: CONVERTER_bam_to_bigwig_0 galaxy.datatypes.registry DEBUG 2024-02-23 13:13:52,177 [pN:main.1,p:74853,tN:Thread-2] Loaded converter: CONVERTER_bam_to_qname_sorted_bam galaxy.datatypes.registry DEBUG 2024-02-23 13:13:52,178 [pN:main.1,p:74853,tN:Thread-2] Loaded converter: CONVERTER_bam_to_bigwig_0 galaxy.datatypes.registry DEBUG 2024-02-23 13:13:52,178 [pN:main.1,p:74853,tN:Thread-2] Loaded converter: CONVERTER_bam_to_coodinate_sorted_bam galaxy.datatypes.registry DEBUG 2024-02-23 13:13:52,183 [pN:main.1,p:74853,tN:Thread-2] Loaded converter: CONVERTER_bam_to_qname_sorted_bam galaxy.datatypes.registry DEBUG 2024-02-23 13:13:52,183 [pN:main.1,p:74853,tN:Thread-2] Loaded converter: CONVERTER_cram_to_bam_0 galaxy.datatypes.registry DEBUG 2024-02-23 13:13:52,183 [pN:main.1,p:74853,tN:Thread-2] Loaded converter: CONVERTER_bed_to_gff_0 galaxy.datatypes.registry DEBUG 2024-02-23 13:13:52,183 [pN:main.1,p:74853,tN:Thread-2] Loaded converter: CONVERTER_interval_to_bgzip_0 galaxy.datatypes.registry DEBUG 2024-02-23 13:13:52,184 [pN:main.1,p:74853,tN:Thread-2] Loaded converter: CONVERTER_interval_to_tabix_0 galaxy.datatypes.registry DEBUG 2024-02-23 13:13:52,184 [pN:main.1,p:74853,tN:Thread-2] Loaded converter: CONVERTER_bed_gff_or_vcf_to_bigwig_0 galaxy.datatypes.registry DEBUG 2024-02-23 13:13:52,184 [pN:main.1,p:74853,tN:Thread-2] Loaded converter: CONVERTER_bed_to_fli_0 galaxy.datatypes.registry DEBUG 2024-02-23 13:13:52,185 [pN:main.1,p:74853,tN:Thread-2] Loaded converter: CONVERTER_bedgraph_to_bigwig galaxy.datatypes.registry DEBUG 2024-02-23 13:13:52,185 [pN:main.1,p:74853,tN:Thread-2] Loaded converter: CONVERTER_len_to_linecount galaxy.datatypes.registry DEBUG 2024-02-23 13:13:52,185 [pN:main.1,p:74853,tN:Thread-2] Loaded converter: CONVERTER_parquet_to_csv galaxy.datatypes.registry DEBUG 2024-02-23 13:13:52,186 [pN:main.1,p:74853,tN:Thread-2] Loaded converter: bigwigtowig galaxy.datatypes.registry DEBUG 2024-02-23 13:13:52,186 [pN:main.1,p:74853,tN:Thread-2] Loaded converter: CONVERTER_interval_to_bgzip_0 galaxy.datatypes.registry DEBUG 2024-02-23 13:13:52,186 [pN:main.1,p:74853,tN:Thread-2] Loaded converter: CONVERTER_interval_to_tabix_0 galaxy.datatypes.registry DEBUG 2024-02-23 13:13:52,186 [pN:main.1,p:74853,tN:Thread-2] Loaded converter: CONVERTER_bed_gff_or_vcf_to_bigwig_0 galaxy.datatypes.registry DEBUG 2024-02-23 13:13:52,187 [pN:main.1,p:74853,tN:Thread-2] Loaded converter: csv_to_tabular galaxy.datatypes.registry DEBUG 2024-02-23 13:13:52,187 [pN:main.1,p:74853,tN:Thread-2] Loaded converter: tabular_to_csv galaxy.datatypes.registry DEBUG 2024-02-23 13:13:52,187 [pN:main.1,p:74853,tN:Thread-2] Loaded converter: CONVERTER_fasta_to_tabular galaxy.datatypes.registry DEBUG 2024-02-23 13:13:52,187 [pN:main.1,p:74853,tN:Thread-2] Loaded converter: CONVERTER_fasta_to_bowtie_base_index galaxy.datatypes.registry DEBUG 2024-02-23 13:13:52,187 [pN:main.1,p:74853,tN:Thread-2] Loaded converter: CONVERTER_fasta_to_bowtie_color_index galaxy.datatypes.registry DEBUG 2024-02-23 13:13:52,187 [pN:main.1,p:74853,tN:Thread-2] Loaded converter: CONVERTER_fasta_to_2bit galaxy.datatypes.registry DEBUG 2024-02-23 13:13:52,187 [pN:main.1,p:74853,tN:Thread-2] Loaded converter: CONVERTER_fasta_to_len galaxy.datatypes.registry DEBUG 2024-02-23 13:13:52,188 [pN:main.1,p:74853,tN:Thread-2] Loaded converter: CONVERTER_fasta_to_fai galaxy.datatypes.registry DEBUG 2024-02-23 13:13:52,188 [pN:main.1,p:74853,tN:Thread-2] Loaded converter: CONVERTER_uncompressed_to_gz galaxy.datatypes.registry DEBUG 2024-02-23 13:13:52,188 [pN:main.1,p:74853,tN:Thread-2] Loaded converter: CONVERTER_gz_to_uncompressed galaxy.datatypes.registry DEBUG 2024-02-23 13:13:52,188 [pN:main.1,p:74853,tN:Thread-2] Loaded converter: CONVERTER_fastq_to_fqtoc0 galaxy.datatypes.registry DEBUG 2024-02-23 13:13:52,189 [pN:main.1,p:74853,tN:Thread-2] Loaded converter: CONVERTER_uncompressed_to_gz galaxy.datatypes.registry DEBUG 2024-02-23 13:13:52,189 [pN:main.1,p:74853,tN:Thread-2] Loaded converter: CONVERTER_gz_to_uncompressed galaxy.datatypes.registry DEBUG 2024-02-23 13:13:52,189 [pN:main.1,p:74853,tN:Thread-2] Loaded converter: CONVERTER_bz2_to_uncompressed galaxy.datatypes.registry DEBUG 2024-02-23 13:13:52,189 [pN:main.1,p:74853,tN:Thread-2] Loaded converter: CONVERTER_fastq_to_fqtoc0 galaxy.datatypes.registry DEBUG 2024-02-23 13:13:52,189 [pN:main.1,p:74853,tN:Thread-2] Loaded converter: CONVERTER_uncompressed_to_gz galaxy.datatypes.registry DEBUG 2024-02-23 13:13:52,189 [pN:main.1,p:74853,tN:Thread-2] Loaded converter: CONVERTER_gz_to_uncompressed galaxy.datatypes.registry DEBUG 2024-02-23 13:13:52,190 [pN:main.1,p:74853,tN:Thread-2] Loaded converter: CONVERTER_bz2_to_uncompressed galaxy.datatypes.registry DEBUG 2024-02-23 13:13:52,190 [pN:main.1,p:74853,tN:Thread-2] Loaded converter: CONVERTER_fastq_to_fqtoc0 galaxy.datatypes.registry DEBUG 2024-02-23 13:13:52,190 [pN:main.1,p:74853,tN:Thread-2] Loaded converter: CONVERTER_uncompressed_to_gz galaxy.datatypes.registry DEBUG 2024-02-23 13:13:52,190 [pN:main.1,p:74853,tN:Thread-2] Loaded converter: CONVERTER_gz_to_uncompressed galaxy.datatypes.registry DEBUG 2024-02-23 13:13:52,190 [pN:main.1,p:74853,tN:Thread-2] Loaded converter: CONVERTER_bz2_to_uncompressed galaxy.datatypes.registry DEBUG 2024-02-23 13:13:52,190 [pN:main.1,p:74853,tN:Thread-2] Loaded converter: CONVERTER_fastq_to_fqtoc0 galaxy.datatypes.registry DEBUG 2024-02-23 13:13:52,191 [pN:main.1,p:74853,tN:Thread-2] Loaded converter: CONVERTER_uncompressed_to_gz galaxy.datatypes.registry DEBUG 2024-02-23 13:13:52,191 [pN:main.1,p:74853,tN:Thread-2] Loaded converter: CONVERTER_gz_to_uncompressed galaxy.datatypes.registry DEBUG 2024-02-23 13:13:52,191 [pN:main.1,p:74853,tN:Thread-2] Loaded converter: CONVERTER_bz2_to_uncompressed galaxy.datatypes.registry DEBUG 2024-02-23 13:13:52,191 [pN:main.1,p:74853,tN:Thread-2] Loaded converter: CONVERTER_fastq_to_fqtoc0 galaxy.datatypes.registry DEBUG 2024-02-23 13:13:52,192 [pN:main.1,p:74853,tN:Thread-2] Loaded converter: CONVERTER_uncompressed_to_gz galaxy.datatypes.registry DEBUG 2024-02-23 13:13:52,192 [pN:main.1,p:74853,tN:Thread-2] Loaded converter: CONVERTER_gz_to_uncompressed galaxy.datatypes.registry DEBUG 2024-02-23 13:13:52,192 [pN:main.1,p:74853,tN:Thread-2] Loaded converter: CONVERTER_bz2_to_uncompressed galaxy.datatypes.registry DEBUG 2024-02-23 13:13:52,192 [pN:main.1,p:74853,tN:Thread-2] Loaded converter: CONVERTER_gff_to_bed_0 galaxy.datatypes.registry DEBUG 2024-02-23 13:13:52,192 [pN:main.1,p:74853,tN:Thread-2] Loaded converter: CONVERTER_gff_to_interval_index_0 galaxy.datatypes.registry DEBUG 2024-02-23 13:13:52,193 [pN:main.1,p:74853,tN:Thread-2] Loaded converter: CONVERTER_bed_gff_or_vcf_to_bigwig_0 galaxy.datatypes.registry DEBUG 2024-02-23 13:13:52,193 [pN:main.1,p:74853,tN:Thread-2] Loaded converter: CONVERTER_gff_to_fli_0 galaxy.datatypes.registry DEBUG 2024-02-23 13:13:52,193 [pN:main.1,p:74853,tN:Thread-2] Loaded converter: CONVERTER_interval_to_bgzip_0 galaxy.datatypes.registry DEBUG 2024-02-23 13:13:52,193 [pN:main.1,p:74853,tN:Thread-2] Loaded converter: CONVERTER_interval_to_tabix_0 galaxy.datatypes.registry DEBUG 2024-02-23 13:13:52,193 [pN:main.1,p:74853,tN:Thread-2] Loaded converter: CONVERTER_uncompressed_to_gz galaxy.datatypes.registry DEBUG 2024-02-23 13:13:52,194 [pN:main.1,p:74853,tN:Thread-2] Loaded converter: CONVERTER_gz_to_uncompressed galaxy.datatypes.registry DEBUG 2024-02-23 13:13:52,194 [pN:main.1,p:74853,tN:Thread-2] Loaded converter: CONVERTER_bz2_to_uncompressed galaxy.datatypes.registry DEBUG 2024-02-23 13:13:52,194 [pN:main.1,p:74853,tN:Thread-2] Loaded converter: CONVERTER_gff_to_interval_index_0 galaxy.datatypes.registry DEBUG 2024-02-23 13:13:52,194 [pN:main.1,p:74853,tN:Thread-2] Loaded converter: CONVERTER_bed_gff_or_vcf_to_bigwig_0 galaxy.datatypes.registry DEBUG 2024-02-23 13:13:52,194 [pN:main.1,p:74853,tN:Thread-2] Loaded converter: CONVERTER_interval_to_bed_0 galaxy.datatypes.registry DEBUG 2024-02-23 13:13:52,195 [pN:main.1,p:74853,tN:Thread-2] Loaded converter: CONVERTER_interval_to_bedstrict_0 galaxy.datatypes.registry DEBUG 2024-02-23 13:13:52,195 [pN:main.1,p:74853,tN:Thread-2] Loaded converter: CONVERTER_interval_to_bed6_0 galaxy.datatypes.registry DEBUG 2024-02-23 13:13:52,195 [pN:main.1,p:74853,tN:Thread-2] Loaded converter: CONVERTER_interval_to_bed12_0 galaxy.datatypes.registry DEBUG 2024-02-23 13:13:52,195 [pN:main.1,p:74853,tN:Thread-2] Loaded converter: CONVERTER_interval_to_bgzip_0 galaxy.datatypes.registry DEBUG 2024-02-23 13:13:52,196 [pN:main.1,p:74853,tN:Thread-2] Loaded converter: CONVERTER_interval_to_tabix_0 galaxy.datatypes.registry DEBUG 2024-02-23 13:13:52,196 [pN:main.1,p:74853,tN:Thread-2] Loaded converter: CONVERTER_interval_to_bigwig_0 galaxy.datatypes.registry DEBUG 2024-02-23 13:13:52,196 [pN:main.1,p:74853,tN:Thread-2] Loaded converter: CONVERTER_picard_interval_list_to_bed6 galaxy.datatypes.registry DEBUG 2024-02-23 13:13:52,196 [pN:main.1,p:74853,tN:Thread-2] Loaded converter: CONVERTER_tar_to_directory galaxy.datatypes.registry DEBUG 2024-02-23 13:13:52,196 [pN:main.1,p:74853,tN:Thread-2] Loaded converter: CONVERTER_uncompressed_to_gz galaxy.datatypes.registry DEBUG 2024-02-23 13:13:52,197 [pN:main.1,p:74853,tN:Thread-2] Loaded converter: CONVERTER_gz_to_uncompressed galaxy.datatypes.registry DEBUG 2024-02-23 13:13:52,197 [pN:main.1,p:74853,tN:Thread-2] Loaded converter: CONVERTER_uncompressed_to_gz galaxy.datatypes.registry DEBUG 2024-02-23 13:13:52,197 [pN:main.1,p:74853,tN:Thread-2] Loaded converter: CONVERTER_gz_to_uncompressed galaxy.datatypes.registry DEBUG 2024-02-23 13:13:52,197 [pN:main.1,p:74853,tN:Thread-2] Loaded converter: CONVERTER_uncompressed_to_gz galaxy.datatypes.registry DEBUG 2024-02-23 13:13:52,197 [pN:main.1,p:74853,tN:Thread-2] Loaded converter: CONVERTER_gz_to_uncompressed galaxy.datatypes.registry DEBUG 2024-02-23 13:13:52,197 [pN:main.1,p:74853,tN:Thread-2] Loaded converter: CONVERTER_maf_to_fasta_0 galaxy.datatypes.registry DEBUG 2024-02-23 13:13:52,198 [pN:main.1,p:74853,tN:Thread-2] Loaded converter: CONVERTER_maf_to_interval_0 galaxy.datatypes.registry DEBUG 2024-02-23 13:13:52,198 [pN:main.1,p:74853,tN:Thread-2] Loaded converter: CONVERTER_interval_to_tabix_0 galaxy.datatypes.registry DEBUG 2024-02-23 13:13:52,198 [pN:main.1,p:74853,tN:Thread-2] Loaded converter: CONVERTER_interval_to_bgzip_0 galaxy.datatypes.registry DEBUG 2024-02-23 13:13:52,198 [pN:main.1,p:74853,tN:Thread-2] Loaded converter: CONVERTER_bed_gff_or_vcf_to_bigwig_0 galaxy.datatypes.registry DEBUG 2024-02-23 13:13:52,198 [pN:main.1,p:74853,tN:Thread-2] Loaded converter: CONVERTER_interval_to_bgzip_0 galaxy.datatypes.registry DEBUG 2024-02-23 13:13:52,199 [pN:main.1,p:74853,tN:Thread-2] Loaded converter: CONVERTER_interval_to_tabix_0 galaxy.datatypes.registry DEBUG 2024-02-23 13:13:52,199 [pN:main.1,p:74853,tN:Thread-2] Loaded converter: CONVERTER_sam_to_unsorted_bam galaxy.datatypes.registry DEBUG 2024-02-23 13:13:52,199 [pN:main.1,p:74853,tN:Thread-2] Loaded converter: CONVERTER_bam_to_coodinate_sorted_bam galaxy.datatypes.registry DEBUG 2024-02-23 13:13:52,200 [pN:main.1,p:74853,tN:Thread-2] Loaded converter: CONVERTER_bam_to_qname_sorted_bam galaxy.datatypes.registry DEBUG 2024-02-23 13:13:52,200 [pN:main.1,p:74853,tN:Thread-2] Loaded converter: CONVERTER_sam_to_bigwig_0 galaxy.datatypes.registry DEBUG 2024-02-23 13:13:52,200 [pN:main.1,p:74853,tN:Thread-2] Loaded converter: tabular_to_dbnsfp galaxy.datatypes.registry DEBUG 2024-02-23 13:13:52,200 [pN:main.1,p:74853,tN:Thread-2] Loaded converter: tabular_to_csv galaxy.datatypes.registry DEBUG 2024-02-23 13:13:52,200 [pN:main.1,p:74853,tN:Thread-2] Loaded converter: CONVERTER_uncompressed_to_gz galaxy.datatypes.registry DEBUG 2024-02-23 13:13:52,200 [pN:main.1,p:74853,tN:Thread-2] Loaded converter: CONVERTER_gz_to_uncompressed galaxy.datatypes.registry DEBUG 2024-02-23 13:13:52,201 [pN:main.1,p:74853,tN:Thread-2] Loaded converter: CONVERTER_interval_to_bgzip_0 galaxy.datatypes.registry DEBUG 2024-02-23 13:13:52,201 [pN:main.1,p:74853,tN:Thread-2] Loaded converter: CONVERTER_vcf_to_vcf_bgzip_0 galaxy.datatypes.registry DEBUG 2024-02-23 13:13:52,201 [pN:main.1,p:74853,tN:Thread-2] Loaded converter: CONVERTER_interval_to_tabix_0 galaxy.datatypes.registry DEBUG 2024-02-23 13:13:52,201 [pN:main.1,p:74853,tN:Thread-2] Loaded converter: CONVERTER_bed_gff_or_vcf_to_bigwig_0 galaxy.datatypes.registry DEBUG 2024-02-23 13:13:52,201 [pN:main.1,p:74853,tN:Thread-2] Loaded converter: CONVERTER_uncompressed_to_gz galaxy.datatypes.registry DEBUG 2024-02-23 13:13:52,201 [pN:main.1,p:74853,tN:Thread-2] Loaded converter: CONVERTER_bcf_uncompressed_to_bcf galaxy.datatypes.registry DEBUG 2024-02-23 13:13:52,202 [pN:main.1,p:74853,tN:Thread-2] Loaded converter: CONVERTER_bcf_uncompressed_to_bcf galaxy.datatypes.registry DEBUG 2024-02-23 13:13:52,202 [pN:main.1,p:74853,tN:Thread-2] Loaded converter: CONVERTER_wig_to_bigwig galaxy.datatypes.registry DEBUG 2024-02-23 13:13:52,202 [pN:main.1,p:74853,tN:Thread-2] Loaded converter: CONVERTER_wiggle_to_interval_0 galaxy.datatypes.registry DEBUG 2024-02-23 13:13:52,202 [pN:main.1,p:74853,tN:Thread-2] Loaded converter: CONVERTER_vcf_bgzip_to_tabix_0 galaxy.datatypes.registry DEBUG 2024-02-23 13:13:52,203 [pN:main.1,p:74853,tN:Thread-2] Loaded converter: CONVERTER_gz_to_uncompressed galaxy.datatypes.registry DEBUG 2024-02-23 13:13:52,203 [pN:main.1,p:74853,tN:Thread-2] Loaded converter: lped2fpedconvert galaxy.datatypes.registry DEBUG 2024-02-23 13:13:52,203 [pN:main.1,p:74853,tN:Thread-2] Loaded converter: lped2pbedconvert galaxy.datatypes.registry DEBUG 2024-02-23 13:13:52,203 [pN:main.1,p:74853,tN:Thread-2] Loaded converter: pbed2lpedconvert galaxy.datatypes.registry DEBUG 2024-02-23 13:13:52,204 [pN:main.1,p:74853,tN:Thread-2] Loaded converter: pbed2ldindepconvert galaxy.datatypes.registry DEBUG 2024-02-23 13:13:52,204 [pN:main.1,p:74853,tN:Thread-2] Loaded converter: CONVERTER_uncompressed_to_gz galaxy.datatypes.registry DEBUG 2024-02-23 13:13:52,204 [pN:main.1,p:74853,tN:Thread-2] Loaded converter: CONVERTER_gz_to_uncompressed galaxy.datatypes.registry DEBUG 2024-02-23 13:13:52,204 [pN:main.1,p:74853,tN:Thread-2] Loaded converter: CONVERTER_biom galaxy.datatypes.registry DEBUG 2024-02-23 13:13:52,205 [pN:main.1,p:74853,tN:Thread-2] Loaded converter: CONVERTER_biom galaxy.datatypes.registry DEBUG 2024-02-23 13:13:52,205 [pN:main.1,p:74853,tN:Thread-2] Loaded converter: CONVERTER_molecules galaxy.datatypes.registry DEBUG 2024-02-23 13:13:52,205 [pN:main.1,p:74853,tN:Thread-2] Loaded converter: CONVERTER_molecules galaxy.datatypes.registry DEBUG 2024-02-23 13:13:52,206 [pN:main.1,p:74853,tN:Thread-2] Loaded converter: CONVERTER_molecules galaxy.datatypes.registry DEBUG 2024-02-23 13:13:52,206 [pN:main.1,p:74853,tN:Thread-2] Loaded converter: CONVERTER_SMILES_to_MOL galaxy.datatypes.registry DEBUG 2024-02-23 13:13:52,206 [pN:main.1,p:74853,tN:Thread-2] Loaded converter: CONVERTER_molecules galaxy.datatypes.registry DEBUG 2024-02-23 13:13:52,206 [pN:main.1,p:74853,tN:Thread-2] Loaded converter: CONVERTER_smiles_to_smiles galaxy.datatypes.registry DEBUG 2024-02-23 13:13:52,206 [pN:main.1,p:74853,tN:Thread-2] Loaded converter: CONVERTER_molecules galaxy.datatypes.registry DEBUG 2024-02-23 13:13:52,207 [pN:main.1,p:74853,tN:Thread-2] Loaded converter: CONVERTER_molecules galaxy.datatypes.registry DEBUG 2024-02-23 13:13:52,207 [pN:main.1,p:74853,tN:Thread-2] Loaded converter: CONVERTER_molecules galaxy.datatypes.registry DEBUG 2024-02-23 13:13:52,207 [pN:main.1,p:74853,tN:Thread-2] Loaded converter: CONVERTER_molecules galaxy.datatypes.registry DEBUG 2024-02-23 13:13:52,207 [pN:main.1,p:74853,tN:Thread-2] Loaded converter: CONVERTER_molecules galaxy.datatypes.registry DEBUG 2024-02-23 13:13:52,207 [pN:main.1,p:74853,tN:Thread-2] Loaded converter: CONVERTER_molecules galaxy.datatypes.registry DEBUG 2024-02-23 13:13:52,208 [pN:main.1,p:74853,tN:Thread-2] Loaded converter: CONVERTER_inchi_to_mol galaxy.datatypes.registry DEBUG 2024-02-23 13:13:52,208 [pN:main.1,p:74853,tN:Thread-2] Loaded converter: CONVERTER_molecules galaxy.datatypes.registry DEBUG 2024-02-23 13:13:52,208 [pN:main.1,p:74853,tN:Thread-2] Loaded converter: CONVERTER_molecules galaxy.datatypes.registry DEBUG 2024-02-23 13:13:52,208 [pN:main.1,p:74853,tN:Thread-2] Loaded converter: CONVERTER_molecules galaxy.datatypes.registry DEBUG 2024-02-23 13:13:52,208 [pN:main.1,p:74853,tN:Thread-2] Loaded converter: CONVERTER_molecules galaxy.datatypes.registry DEBUG 2024-02-23 13:13:52,209 [pN:main.1,p:74853,tN:Thread-2] Loaded converter: CONVERTER_molecules galaxy.datatypes.registry DEBUG 2024-02-23 13:13:52,209 [pN:main.1,p:74853,tN:Thread-2] Loaded converter: CONVERTER_molecules galaxy.datatypes.registry DEBUG 2024-02-23 13:13:52,209 [pN:main.1,p:74853,tN:Thread-2] Loaded converter: CONVERTER_molecules galaxy.datatypes.registry DEBUG 2024-02-23 13:13:52,209 [pN:main.1,p:74853,tN:Thread-2] Loaded converter: CONVERTER_molecules galaxy.datatypes.registry DEBUG 2024-02-23 13:13:52,209 [pN:main.1,p:74853,tN:Thread-2] Loaded converter: CONVERTER_molecules galaxy.datatypes.registry DEBUG 2024-02-23 13:13:52,210 [pN:main.1,p:74853,tN:Thread-2] Loaded converter: CONVERTER_molecules galaxy.datatypes.registry DEBUG 2024-02-23 13:13:52,210 [pN:main.1,p:74853,tN:Thread-2] Loaded converter: CONVERTER_mol2_to_mol galaxy.datatypes.registry DEBUG 2024-02-23 13:13:52,210 [pN:main.1,p:74853,tN:Thread-2] Loaded converter: CONVERTER_molecules galaxy.datatypes.registry DEBUG 2024-02-23 13:13:52,210 [pN:main.1,p:74853,tN:Thread-2] Loaded converter: CONVERTER_cml_to_smiles galaxy.datatypes.registry DEBUG 2024-02-23 13:13:52,210 [pN:main.1,p:74853,tN:Thread-2] Loaded converter: CONVERTER_molecules galaxy.datatypes.registry DEBUG 2024-02-23 13:13:52,210 [pN:main.1,p:74853,tN:Thread-2] Loaded converter: CONVERTER_molecules galaxy.datatypes.registry DEBUG 2024-02-23 13:13:52,211 [pN:main.1,p:74853,tN:Thread-2] Loaded converter: CONVERTER_molecules galaxy.datatypes.registry DEBUG 2024-02-23 13:13:52,211 [pN:main.1,p:74853,tN:Thread-2] Loaded converter: CONVERTER_Pdb_to_Gro_0 galaxy.datatypes.registry DEBUG 2024-02-23 13:13:52,211 [pN:main.1,p:74853,tN:Thread-2] Loaded converter: CONVERTER_mdconvert galaxy.datatypes.registry DEBUG 2024-02-23 13:13:52,212 [pN:main.1,p:74853,tN:Thread-2] Loaded converter: CONVERTER_mdconvert galaxy.datatypes.registry DEBUG 2024-02-23 13:13:52,212 [pN:main.1,p:74853,tN:Thread-2] Loaded converter: CONVERTER_mdconvert galaxy.datatypes.registry DEBUG 2024-02-23 13:13:52,212 [pN:main.1,p:74853,tN:Thread-2] Loaded converter: CONVERTER_mdconvert galaxy.datatypes.registry DEBUG 2024-02-23 13:13:52,213 [pN:main.1,p:74853,tN:Thread-2] Loaded converter: CONVERTER_mdconvert galaxy.datatypes.registry DEBUG 2024-02-23 13:13:52,213 [pN:main.1,p:74853,tN:Thread-2] Loaded converter: CONVERTER_mdconvert galaxy.datatypes.registry DEBUG 2024-02-23 13:13:52,214 [pN:main.1,p:74853,tN:Thread-2] Loaded converter: CONVERTER_Gro_to_Pdb_0 galaxy.datatypes.registry DEBUG 2024-02-23 13:13:52,214 [pN:main.1,p:74853,tN:Thread-2] Loaded converter: CONVERTER_ref_to_seq_taxomony galaxy.datatypes.registry DEBUG 2024-02-23 13:13:52,214 [pN:main.1,p:74853,tN:Thread-2] Loaded converter: CONVERTER_neostorezip_to_neostore galaxy.datatypes.registry DEBUG 2024-02-23 13:13:52,240 [pN:main.1,p:74853,tN:Thread-2] Loaded external metadata tool: __SET_METADATA__ galaxy.tools.special_tools DEBUG 2024-02-23 13:13:52,253 [pN:main.1,p:74853,tN:Thread-2] Loaded history export tool: __EXPORT_HISTORY__ galaxy.tools.special_tools DEBUG 2024-02-23 13:13:52,265 [pN:main.1,p:74853,tN:Thread-2] Loaded history export to uri tool: __EXPORT_HISTORY_TO_URI__ galaxy.tools.special_tools DEBUG 2024-02-23 13:13:52,275 [pN:main.1,p:74853,tN:Thread-2] Loaded history import tool: __IMPORT_HISTORY__ galaxy.tools.special_tools DEBUG 2024-02-23 13:13:52,304 [pN:main.1,p:74853,tN:Thread-2] Loaded data fetch tool: __DATA_FETCH__ galaxy.model.database_heartbeat DEBUG 2024-02-23 13:13:52,304 [pN:main.1,p:74853,tN:database_heartbeart_main.1.thread] main.1 is config watcher galaxy.queue_worker INFO 2024-02-23 13:13:52,305 [pN:main.1,p:74853,tN:Thread-2] Queuing async task rebuild_toolbox_search_index for main.1. galaxy.queue_worker DEBUG 2024-02-23 13:13:52,333 [pN:main.1,p:74853,tN:Thread-2] Toolbox reload (175.370 ms) galaxy.queue_worker INFO 2024-02-23 13:13:52,333 [pN:main.1,p:74853,tN:Thread-2] Queuing async task rebuild_toolbox_search_index for main.1. galaxy.queue_worker INFO 2024-02-23 13:13:52,346 [pN:main.1,p:74853,tN:Thread-1] Instance 'main.1' received 'rebuild_toolbox_search_index' task, executing now. galaxy.tools.search DEBUG 2024-02-23 13:13:52,346 [pN:main.1,p:74853,tN:Thread-1] Starting to build toolbox index of panel default. galaxy.web_stack INFO 2024-02-23 13:13:52,356 [pN:main.1,p:74853,tN:Thread-2] Galaxy server instance 'main.1' is running [92m Serving on http://127.0.0.1:45523 [0m galaxy.tools.search DEBUG 2024-02-23 13:13:52,358 [pN:main.1,p:74853,tN:Thread-1] Toolbox index of panel default finished (11.396 ms) galaxy.tools.search DEBUG 2024-02-23 13:13:52,358 [pN:main.1,p:74853,tN:Thread-1] Starting to build toolbox index of panel ontology:edam_operations. galaxy.tools.search DEBUG 2024-02-23 13:13:52,362 [pN:main.1,p:74853,tN:Thread-1] Toolbox index of panel ontology:edam_operations finished (4.037 ms) galaxy.tools.search DEBUG 2024-02-23 13:13:52,363 [pN:main.1,p:74853,tN:Thread-1] Starting to build toolbox index of panel ontology:edam_topics. galaxy.tools.search DEBUG 2024-02-23 13:13:52,366 [pN:main.1,p:74853,tN:Thread-1] Toolbox index of panel ontology:edam_topics finished (3.603 ms) galaxy.queue_worker INFO 2024-02-23 13:13:52,375 [pN:main.1,p:74853,tN:Thread-1] Instance 'main.1' received 'rebuild_toolbox_search_index' task, executing now. galaxy.tools.search DEBUG 2024-02-23 13:13:52,375 [pN:main.1,p:74853,tN:Thread-1] Starting to build toolbox index of panel default. galaxy.tools.search DEBUG 2024-02-23 13:13:52,378 [pN:main.1,p:74853,tN:Thread-1] Toolbox index of panel default finished (3.323 ms) galaxy.tools.search DEBUG 2024-02-23 13:13:52,379 [pN:main.1,p:74853,tN:Thread-1] Starting to build toolbox index of panel ontology:edam_operations. galaxy.tools.search DEBUG 2024-02-23 13:13:52,382 [pN:main.1,p:74853,tN:Thread-1] Toolbox index of panel ontology:edam_operations finished (3.145 ms) galaxy.tools.search DEBUG 2024-02-23 13:13:52,382 [pN:main.1,p:74853,tN:Thread-1] Starting to build toolbox index of panel ontology:edam_topics. galaxy.tools.search DEBUG 2024-02-23 13:13:52,385 [pN:main.1,p:74853,tN:Thread-1] Toolbox index of panel ontology:edam_topics finished (3.148 ms) multipart.multipart DEBUG 2024-02-23 13:13:53,181 [pN:main.1,p:74853,tN:MainThread] Calling on_field_start with no data multipart.multipart DEBUG 2024-02-23 13:13:53,181 [pN:main.1,p:74853,tN:MainThread] Calling on_field_name with data[0:4] multipart.multipart DEBUG 2024-02-23 13:13:53,182 [pN:main.1,p:74853,tN:MainThread] Calling on_field_data with data[5:63] multipart.multipart DEBUG 2024-02-23 13:13:53,182 [pN:main.1,p:74853,tN:MainThread] Calling on_field_end with no data multipart.multipart DEBUG 2024-02-23 13:13:53,182 [pN:main.1,p:74853,tN:MainThread] Calling on_end with no data galaxy.tools INFO 2024-02-23 13:13:53,372 [pN:main.1,p:74853,tN:WSGI_3] Validated and populated state for tool request (12.245 ms) galaxy.tools.actions.upload DEBUG 2024-02-23 13:13:53,378 [pN:main.1,p:74853,tN:WSGI_3] Persisted uploads (0.124 ms) galaxy.tools.actions.upload DEBUG 2024-02-23 13:13:53,486 [pN:main.1,p:74853,tN:WSGI_3] Checked uploads (107.703 ms) galaxy.tools.actions.upload DEBUG 2024-02-23 13:13:53,490 [pN:main.1,p:74853,tN:WSGI_3] Created upload job (3.579 ms) galaxy.tools.execute DEBUG 2024-02-23 13:13:53,490 [pN:main.1,p:74853,tN:WSGI_3] Tool upload1 created job None (112.119 ms) galaxy.web_stack.handlers INFO 2024-02-23 13:13:53,513 [pN:main.1,p:74853,tN:WSGI_3] (Job[id=1,tool_id=upload1]) Handler '_default_' assigned using 'HANDLER_ASSIGNMENT_METHODS.DB_SKIP_LOCKED' assignment method galaxy.tools.execute DEBUG 2024-02-23 13:13:53,518 [pN:main.1,p:74853,tN:WSGI_3] Created 1 job(s) for tool upload1 request (145.749 ms) galaxy.jobs.mapper DEBUG 2024-02-23 13:13:54,375 [pN:main.1,p:74853,tN:JobHandlerQueue.monitor_thread] (1) Mapped job to destination id: docker_local galaxy.jobs.handler DEBUG 2024-02-23 13:13:54,379 [pN:main.1,p:74853,tN:JobHandlerQueue.monitor_thread] (1) Dispatching to local runner galaxy.jobs DEBUG 2024-02-23 13:13:54,387 [pN:main.1,p:74853,tN:JobHandlerQueue.monitor_thread] (1) Persisting job destination (destination id: docker_local) galaxy.jobs DEBUG 2024-02-23 13:13:54,394 [pN:main.1,p:74853,tN:JobHandlerQueue.monitor_thread] (1) Working directory for job is: /tmp/tmpj6ure7bs/job_working_directory/000/1 galaxy.jobs.runners DEBUG 2024-02-23 13:13:54,399 [pN:main.1,p:74853,tN:JobHandlerQueue.monitor_thread] Job [1] queued (19.134 ms) galaxy.jobs.handler INFO 2024-02-23 13:13:54,409 [pN:main.1,p:74853,tN:JobHandlerQueue.monitor_thread] (1) Job dispatched galaxy.jobs DEBUG 2024-02-23 13:13:54,559 [pN:main.1,p:74853,tN:LocalRunner.work_thread-0] Job wrapper for Job [1] prepared (143.512 ms) galaxy.tool_util.deps.containers INFO 2024-02-23 13:13:54,560 [pN:main.1,p:74853,tN:LocalRunner.work_thread-0] Checking with container resolver [ExplicitContainerResolver[]] found description [None] galaxy.tool_util.deps.containers INFO 2024-02-23 13:13:54,560 [pN:main.1,p:74853,tN:LocalRunner.work_thread-0] Checking with container resolver [CachedMulledDockerContainerResolver[namespace=biocontainers]] found description [None] galaxy.tool_util.deps.containers INFO 2024-02-23 13:13:54,560 [pN:main.1,p:74853,tN:LocalRunner.work_thread-0] Checking with container resolver [CachedMulledDockerContainerResolver[namespace=local]] found description [None] galaxy.tool_util.deps.containers INFO 2024-02-23 13:13:54,560 [pN:main.1,p:74853,tN:LocalRunner.work_thread-0] Checking with container resolver [MulledDockerContainerResolver[namespace=biocontainers]] found description [None] galaxy.tool_util.deps.containers INFO 2024-02-23 13:13:54,560 [pN:main.1,p:74853,tN:LocalRunner.work_thread-0] Checking with container resolver [BuildDockerContainerResolver[namespace=local]] found description [None] galaxy.jobs.command_factory INFO 2024-02-23 13:13:54,591 [pN:main.1,p:74853,tN:LocalRunner.work_thread-0] Built script [/tmp/tmpj6ure7bs/job_working_directory/000/1/tool_script.sh] for tool command [python '/scratch/rico/galaxy/tools/data_source/upload.py' '/scratch/rico/galaxy' '/tmp/tmpj6ure7bs/job_working_directory/000/1/registry.xml' '/tmp/tmpj6ure7bs/job_working_directory/000/1/upload_params.json' '1:/tmp/tmpj6ure7bs/job_working_directory/000/1/outputs/dataset_303483b7-51f2-45b2-8279-f59f17d38a4c_files:/tmp/tmpj6ure7bs/job_working_directory/000/1/outputs/dataset_303483b7-51f2-45b2-8279-f59f17d38a4c.dat'] galaxy.jobs.runners DEBUG 2024-02-23 13:13:54,641 [pN:main.1,p:74853,tN:LocalRunner.work_thread-0] (1) command is: mkdir -p working outputs configs if [ -d _working ]; then rm -rf working/ outputs/ configs/; cp -R _working working; cp -R _outputs outputs; cp -R _configs configs else cp -R working _working; cp -R outputs _outputs; cp -R configs _configs fi cd working; /bin/bash /tmp/tmpj6ure7bs/job_working_directory/000/1/tool_script.sh > '../outputs/tool_stdout' 2> '../outputs/tool_stderr'; return_code=$?; echo $return_code > /tmp/tmpj6ure7bs/job_working_directory/000/1/galaxy_1.ec; cd '/tmp/tmpj6ure7bs/job_working_directory/000/1'; [ "$GALAXY_VIRTUAL_ENV" = "None" ] && GALAXY_VIRTUAL_ENV="$_GALAXY_VIRTUAL_ENV"; _galaxy_setup_environment True; python metadata/set.py; sh -c "exit $return_code" galaxy.jobs.runners.local DEBUG 2024-02-23 13:13:54,664 [pN:main.1,p:74853,tN:LocalRunner.work_thread-0] (1) executing job script: /tmp/tmpj6ure7bs/job_working_directory/000/1/galaxy_1.sh galaxy.jobs.runners.util.process_groups DEBUG 2024-02-23 13:14:01,259 [pN:main.1,p:74853,tN:LocalRunner.work_thread-0] check_pg(): No process found in process group 74876 galaxy.jobs.runners.local DEBUG 2024-02-23 13:14:01,260 [pN:main.1,p:74853,tN:LocalRunner.work_thread-0] execution finished: /tmp/tmpj6ure7bs/job_working_directory/000/1/galaxy_1.sh galaxy.jobs DEBUG 2024-02-23 13:14:01,284 [pN:main.1,p:74853,tN:LocalRunner.work_thread-0] finish(): Moved /tmp/tmpj6ure7bs/job_working_directory/000/1/outputs/dataset_303483b7-51f2-45b2-8279-f59f17d38a4c.dat to /tmp/tmpj6ure7bs/files/3/0/3/dataset_303483b7-51f2-45b2-8279-f59f17d38a4c.dat galaxy.model.metadata DEBUG 2024-02-23 13:14:01,294 [pN:main.1,p:74853,tN:LocalRunner.work_thread-0] loading metadata from file for: HistoryDatasetAssociation 1 galaxy.jobs DEBUG 2024-02-23 13:14:01,328 [pN:main.1,p:74853,tN:LocalRunner.work_thread-0] job_wrapper.finish for job 1 executed (49.786 ms) galaxy.tools INFO 2024-02-23 13:14:01,409 [pN:main.1,p:74853,tN:WSGI_0] Validated and populated state for tool request (13.629 ms) galaxy.tools.actions INFO 2024-02-23 13:14:01,416 [pN:main.1,p:74853,tN:WSGI_0] Handled output named adaptor_report for tool ncbi_fcs_adaptor (3.499 ms) galaxy.tools.actions INFO 2024-02-23 13:14:01,418 [pN:main.1,p:74853,tN:WSGI_0] Handled output named clean_fasta for tool ncbi_fcs_adaptor (2.432 ms) galaxy.tools.actions INFO 2024-02-23 13:14:01,444 [pN:main.1,p:74853,tN:WSGI_0] Added output datasets to history (25.351 ms) galaxy.tools.actions INFO 2024-02-23 13:14:01,447 [pN:main.1,p:74853,tN:WSGI_0] Setup for job Job[unflushed,tool_id=ncbi_fcs_adaptor] complete, ready to be enqueued (2.539 ms) galaxy.tools.execute DEBUG 2024-02-23 13:14:01,447 [pN:main.1,p:74853,tN:WSGI_0] Tool ncbi_fcs_adaptor created job None (36.068 ms) galaxy.web_stack.handlers INFO 2024-02-23 13:14:01,474 [pN:main.1,p:74853,tN:WSGI_0] (Job[id=2,tool_id=ncbi_fcs_adaptor]) Handler '_default_' assigned using 'HANDLER_ASSIGNMENT_METHODS.DB_SKIP_LOCKED' assignment method galaxy.tools.execute DEBUG 2024-02-23 13:14:01,478 [pN:main.1,p:74853,tN:WSGI_0] Created 1 job(s) for tool ncbi_fcs_adaptor request (69.445 ms) galaxy.jobs.mapper DEBUG 2024-02-23 13:14:01,570 [pN:main.1,p:74853,tN:JobHandlerQueue.monitor_thread] (2) Mapped job to destination id: docker_local galaxy.jobs.handler DEBUG 2024-02-23 13:14:01,573 [pN:main.1,p:74853,tN:JobHandlerQueue.monitor_thread] (2) Dispatching to local runner galaxy.jobs DEBUG 2024-02-23 13:14:01,579 [pN:main.1,p:74853,tN:JobHandlerQueue.monitor_thread] (2) Persisting job destination (destination id: docker_local) galaxy.jobs DEBUG 2024-02-23 13:14:01,584 [pN:main.1,p:74853,tN:JobHandlerQueue.monitor_thread] (2) Working directory for job is: /tmp/tmpj6ure7bs/job_working_directory/000/2 galaxy.jobs.runners DEBUG 2024-02-23 13:14:01,593 [pN:main.1,p:74853,tN:JobHandlerQueue.monitor_thread] Job [2] queued (19.486 ms) galaxy.jobs.handler INFO 2024-02-23 13:14:01,603 [pN:main.1,p:74853,tN:JobHandlerQueue.monitor_thread] (2) Job dispatched galaxy.security.object_wrapper WARNING 2024-02-23 13:14:01,642 [pN:main.1,p:74853,tN:LocalRunner.work_thread-1] Unable to create dynamic subclass SafeStringWrapper__galaxy.model.none_like.None__NoneType__NotImplementedType__Number__SafeStringWrapper__ToolParameterValueWrapper__bool__bytearray__ellipsis for <class 'galaxy.model.none_like.NoneDataset'>, None: type() doesn't support MRO entry resolution; use types.new_class() galaxy.jobs DEBUG 2024-02-23 13:14:01,656 [pN:main.1,p:74853,tN:LocalRunner.work_thread-1] Job wrapper for Job [2] prepared (42.575 ms) galaxy.tool_util.deps.containers INFO 2024-02-23 13:14:01,656 [pN:main.1,p:74853,tN:LocalRunner.work_thread-1] Checking with container resolver [ExplicitContainerResolver[]] found description [ContainerDescription[identifier=ncbi/fcs-adaptor:0.5.0,type=docker]] galaxy.jobs.command_factory INFO 2024-02-23 13:14:01,698 [pN:main.1,p:74853,tN:LocalRunner.work_thread-1] Built script [/tmp/tmpj6ure7bs/job_working_directory/000/2/tool_script.sh] for tool command [/app/fcs/bin/av_screen_x -o "$(pwd)" '--prok' '/tmp/tmpj6ure7bs/files/3/0/3/dataset_303483b7-51f2-45b2-8279-f59f17d38a4c.dat'] galaxy.jobs.runners DEBUG 2024-02-23 13:14:01,733 [pN:main.1,p:74853,tN:LocalRunner.work_thread-1] (2) command is: mkdir -p working outputs configs if [ -d _working ]; then rm -rf working/ outputs/ configs/; cp -R _working working; cp -R _outputs outputs; cp -R _configs configs else cp -R working _working; cp -R outputs _outputs; cp -R configs _configs fi cd working; _on_exit() { docker kill 15900a0a49e5416fa624bbd7d174f9d5 &> /dev/null } trap _on_exit EXIT docker inspect ncbi/fcs-adaptor:0.5.0 > /dev/null 2>&1 [ $? -ne 0 ] && docker pull ncbi/fcs-adaptor:0.5.0 > /dev/null 2>&1 docker run -e "GALAXY_SLOTS=$GALAXY_SLOTS" -e "GALAXY_MEMORY_MB=$GALAXY_MEMORY_MB" -e "GALAXY_MEMORY_MB_PER_SLOT=$GALAXY_MEMORY_MB_PER_SLOT" -e "HOME=$HOME" -e "_GALAXY_JOB_HOME_DIR=$_GALAXY_JOB_HOME_DIR" -e "_GALAXY_JOB_TMP_DIR=$_GALAXY_JOB_TMP_DIR" -e "TMPDIR=$TMPDIR" -e "TMP=$TMP" -e "TEMP=$TEMP" --name 15900a0a49e5416fa624bbd7d174f9d5 -v "$_GALAXY_JOB_TMP_DIR:$_GALAXY_JOB_TMP_DIR:rw" -v "$TMPDIR:$TMPDIR:rw" -v "$TMP:$TMP:rw" -v "$TEMP:$TEMP:rw" -v /scratch/rico/galaxy:/scratch/rico/galaxy:ro -v /scratch/rico/galaxytools/tools/ncbi_fcs_adaptor:/scratch/rico/galaxytools/tools/ncbi_fcs_adaptor:ro -v /tmp/tmpj6ure7bs/job_working_directory/000/2:/tmp/tmpj6ure7bs/job_working_directory/000/2:ro -v /tmp/tmpj6ure7bs/job_working_directory/000/2/outputs:/tmp/tmpj6ure7bs/job_working_directory/000/2/outputs:rw -v "$_GALAXY_JOB_HOME_DIR:$_GALAXY_JOB_HOME_DIR:rw" -v /tmp/tmpj6ure7bs/job_working_directory/000/2/working:/tmp/tmpj6ure7bs/job_working_directory/000/2/working:rw -v /tmp/tmpj6ure7bs/files:/tmp/tmpj6ure7bs/files:ro -v /scratch/rico/galaxy/tool-data:/scratch/rico/galaxy/tool-data:ro --cpus ${GALAXY_SLOTS:-1} -w /tmp/tmpj6ure7bs/job_working_directory/000/2/working --rm --user 1028:1028 ncbi/fcs-adaptor:0.5.0 /bin/sh /tmp/tmpj6ure7bs/job_working_directory/000/2/tool_script.sh > '../outputs/tool_stdout' 2> '../outputs/tool_stderr'; return_code=$?; echo $return_code > /tmp/tmpj6ure7bs/job_working_directory/000/2/galaxy_2.ec; if [ -f "/tmp/tmpj6ure7bs/job_working_directory/000/2/working/fcs_adaptor_report.txt" ] ; then cp "/tmp/tmpj6ure7bs/job_working_directory/000/2/working/fcs_adaptor_report.txt" "/tmp/tmpj6ure7bs/job_working_directory/000/2/outputs/dataset_fab2b00e-e716-4cd6-ab32-0509438ea8f2.dat" ; fi; if [ -f "/tmp/tmpj6ure7bs/job_working_directory/000/2/working/cleaned_sequences/"*".dat" ] ; then cp "/tmp/tmpj6ure7bs/job_working_directory/000/2/working/cleaned_sequences/"*".dat" "/tmp/tmpj6ure7bs/job_working_directory/000/2/outputs/dataset_ccbb6293-458e-4095-89f6-0e946f989b0b.dat" ; fi; cd '/tmp/tmpj6ure7bs/job_working_directory/000/2'; [ "$GALAXY_VIRTUAL_ENV" = "None" ] && GALAXY_VIRTUAL_ENV="$_GALAXY_VIRTUAL_ENV"; _galaxy_setup_environment True; python metadata/set.py; sh -c "exit $return_code" galaxy.jobs.runners.local DEBUG 2024-02-23 13:14:01,758 [pN:main.1,p:74853,tN:LocalRunner.work_thread-1] (2) executing job script: /tmp/tmpj6ure7bs/job_working_directory/000/2/galaxy_2.sh galaxy.jobs.runners.util.process_groups DEBUG 2024-02-23 13:14:51,671 [pN:main.1,p:74853,tN:LocalRunner.work_thread-1] check_pg(): No process found in process group 75033 galaxy.jobs.runners.local DEBUG 2024-02-23 13:14:51,673 [pN:main.1,p:74853,tN:LocalRunner.work_thread-1] execution finished: /tmp/tmpj6ure7bs/job_working_directory/000/2/galaxy_2.sh galaxy.jobs DEBUG 2024-02-23 13:14:51,719 [pN:main.1,p:74853,tN:LocalRunner.work_thread-1] finish(): Moved /tmp/tmpj6ure7bs/job_working_directory/000/2/outputs/dataset_fab2b00e-e716-4cd6-ab32-0509438ea8f2.dat to /tmp/tmpj6ure7bs/files/f/a/b/dataset_fab2b00e-e716-4cd6-ab32-0509438ea8f2.dat galaxy.jobs DEBUG 2024-02-23 13:14:51,720 [pN:main.1,p:74853,tN:LocalRunner.work_thread-1] finish(): Moved /tmp/tmpj6ure7bs/job_working_directory/000/2/outputs/dataset_ccbb6293-458e-4095-89f6-0e946f989b0b.dat to /tmp/tmpj6ure7bs/files/c/c/b/dataset_ccbb6293-458e-4095-89f6-0e946f989b0b.dat galaxy.model.metadata DEBUG 2024-02-23 13:14:51,759 [pN:main.1,p:74853,tN:LocalRunner.work_thread-1] loading metadata from file for: HistoryDatasetAssociation 2 galaxy.model.metadata DEBUG 2024-02-23 13:14:51,768 [pN:main.1,p:74853,tN:LocalRunner.work_thread-1] loading metadata from file for: HistoryDatasetAssociation 3 galaxy.jobs DEBUG 2024-02-23 13:14:51,801 [pN:main.1,p:74853,tN:LocalRunner.work_thread-1] job_wrapper.finish for job 2 executed (103.873 ms) multipart.multipart DEBUG 2024-02-23 13:14:52,699 [pN:main.1,p:74853,tN:MainThread] Calling on_field_start with no data multipart.multipart DEBUG 2024-02-23 13:14:52,699 [pN:main.1,p:74853,tN:MainThread] Calling on_field_name with data[0:4] multipart.multipart DEBUG 2024-02-23 13:14:52,700 [pN:main.1,p:74853,tN:MainThread] Calling on_field_data with data[5:63] multipart.multipart DEBUG 2024-02-23 13:14:52,700 [pN:main.1,p:74853,tN:MainThread] Calling on_field_end with no data multipart.multipart DEBUG 2024-02-23 13:14:52,700 [pN:main.1,p:74853,tN:MainThread] Calling on_end with no data galaxy.tools INFO 2024-02-23 13:14:52,845 [pN:main.1,p:74853,tN:WSGI_8] Validated and populated state for tool request (7.865 ms) galaxy.tools.actions.upload DEBUG 2024-02-23 13:14:52,848 [pN:main.1,p:74853,tN:WSGI_8] Persisted uploads (0.123 ms) galaxy.tools.actions.upload DEBUG 2024-02-23 13:14:52,891 [pN:main.1,p:74853,tN:WSGI_8] Checked uploads (42.421 ms) galaxy.tools.actions.upload DEBUG 2024-02-23 13:14:52,893 [pN:main.1,p:74853,tN:WSGI_8] Created upload job (2.161 ms) galaxy.tools.execute DEBUG 2024-02-23 13:14:52,893 [pN:main.1,p:74853,tN:WSGI_8] Tool upload1 created job None (45.249 ms) galaxy.web_stack.handlers INFO 2024-02-23 13:14:52,906 [pN:main.1,p:74853,tN:WSGI_8] (Job[id=3,tool_id=upload1]) Handler '_default_' assigned using 'HANDLER_ASSIGNMENT_METHODS.DB_SKIP_LOCKED' assignment method galaxy.tools.execute DEBUG 2024-02-23 13:14:52,909 [pN:main.1,p:74853,tN:WSGI_8] Created 1 job(s) for tool upload1 request (63.928 ms) galaxy.jobs.mapper DEBUG 2024-02-23 13:14:53,827 [pN:main.1,p:74853,tN:JobHandlerQueue.monitor_thread] (3) Mapped job to destination id: docker_local galaxy.jobs.handler DEBUG 2024-02-23 13:14:53,831 [pN:main.1,p:74853,tN:JobHandlerQueue.monitor_thread] (3) Dispatching to local runner galaxy.jobs DEBUG 2024-02-23 13:14:53,838 [pN:main.1,p:74853,tN:JobHandlerQueue.monitor_thread] (3) Persisting job destination (destination id: docker_local) galaxy.jobs DEBUG 2024-02-23 13:14:53,843 [pN:main.1,p:74853,tN:JobHandlerQueue.monitor_thread] (3) Working directory for job is: /tmp/tmpj6ure7bs/job_working_directory/000/3 galaxy.jobs.runners DEBUG 2024-02-23 13:14:53,848 [pN:main.1,p:74853,tN:JobHandlerQueue.monitor_thread] Job [3] queued (17.198 ms) galaxy.jobs.handler INFO 2024-02-23 13:14:53,862 [pN:main.1,p:74853,tN:JobHandlerQueue.monitor_thread] (3) Job dispatched galaxy.jobs DEBUG 2024-02-23 13:14:53,913 [pN:main.1,p:74853,tN:LocalRunner.work_thread-2] Job wrapper for Job [3] prepared (40.063 ms) galaxy.tool_util.deps.containers INFO 2024-02-23 13:14:53,913 [pN:main.1,p:74853,tN:LocalRunner.work_thread-2] Checking with container resolver [ExplicitContainerResolver[]] found description [None] galaxy.tool_util.deps.containers INFO 2024-02-23 13:14:53,913 [pN:main.1,p:74853,tN:LocalRunner.work_thread-2] Checking with container resolver [CachedMulledDockerContainerResolver[namespace=biocontainers]] found description [None] galaxy.tool_util.deps.containers INFO 2024-02-23 13:14:53,913 [pN:main.1,p:74853,tN:LocalRunner.work_thread-2] Checking with container resolver [CachedMulledDockerContainerResolver[namespace=local]] found description [None] galaxy.tool_util.deps.containers INFO 2024-02-23 13:14:53,914 [pN:main.1,p:74853,tN:LocalRunner.work_thread-2] Checking with container resolver [MulledDockerContainerResolver[namespace=biocontainers]] found description [None] galaxy.tool_util.deps.containers INFO 2024-02-23 13:14:53,914 [pN:main.1,p:74853,tN:LocalRunner.work_thread-2] Checking with container resolver [BuildDockerContainerResolver[namespace=local]] found description [None] galaxy.jobs.command_factory INFO 2024-02-23 13:14:53,944 [pN:main.1,p:74853,tN:LocalRunner.work_thread-2] Built script [/tmp/tmpj6ure7bs/job_working_directory/000/3/tool_script.sh] for tool command [python '/scratch/rico/galaxy/tools/data_source/upload.py' '/scratch/rico/galaxy' '/tmp/tmpj6ure7bs/job_working_directory/000/3/registry.xml' '/tmp/tmpj6ure7bs/job_working_directory/000/3/upload_params.json' '4:/tmp/tmpj6ure7bs/job_working_directory/000/3/outputs/dataset_a9a022dd-9347-484e-b0d5-f0e043707b2d_files:/tmp/tmpj6ure7bs/job_working_directory/000/3/outputs/dataset_a9a022dd-9347-484e-b0d5-f0e043707b2d.dat'] galaxy.jobs.runners DEBUG 2024-02-23 13:14:53,972 [pN:main.1,p:74853,tN:LocalRunner.work_thread-2] (3) command is: mkdir -p working outputs configs if [ -d _working ]; then rm -rf working/ outputs/ configs/; cp -R _working working; cp -R _outputs outputs; cp -R _configs configs else cp -R working _working; cp -R outputs _outputs; cp -R configs _configs fi cd working; /bin/bash /tmp/tmpj6ure7bs/job_working_directory/000/3/tool_script.sh > '../outputs/tool_stdout' 2> '../outputs/tool_stderr'; return_code=$?; echo $return_code > /tmp/tmpj6ure7bs/job_working_directory/000/3/galaxy_3.ec; cd '/tmp/tmpj6ure7bs/job_working_directory/000/3'; [ "$GALAXY_VIRTUAL_ENV" = "None" ] && GALAXY_VIRTUAL_ENV="$_GALAXY_VIRTUAL_ENV"; _galaxy_setup_environment True; python metadata/set.py; sh -c "exit $return_code" galaxy.jobs.runners.local DEBUG 2024-02-23 13:14:53,995 [pN:main.1,p:74853,tN:LocalRunner.work_thread-2] (3) executing job script: /tmp/tmpj6ure7bs/job_working_directory/000/3/galaxy_3.sh galaxy.jobs.runners.util.process_groups DEBUG 2024-02-23 13:15:00,811 [pN:main.1,p:74853,tN:LocalRunner.work_thread-2] check_pg(): No process found in process group 75352 galaxy.jobs.runners.local DEBUG 2024-02-23 13:15:00,812 [pN:main.1,p:74853,tN:LocalRunner.work_thread-2] execution finished: /tmp/tmpj6ure7bs/job_working_directory/000/3/galaxy_3.sh galaxy.jobs DEBUG 2024-02-23 13:15:00,836 [pN:main.1,p:74853,tN:LocalRunner.work_thread-2] finish(): Moved /tmp/tmpj6ure7bs/job_working_directory/000/3/outputs/dataset_a9a022dd-9347-484e-b0d5-f0e043707b2d.dat to /tmp/tmpj6ure7bs/files/a/9/a/dataset_a9a022dd-9347-484e-b0d5-f0e043707b2d.dat galaxy.model.metadata DEBUG 2024-02-23 13:15:00,844 [pN:main.1,p:74853,tN:LocalRunner.work_thread-2] loading metadata from file for: HistoryDatasetAssociation 4 galaxy.jobs DEBUG 2024-02-23 13:15:00,870 [pN:main.1,p:74853,tN:LocalRunner.work_thread-2] job_wrapper.finish for job 3 executed (41.253 ms) galaxy.tools INFO 2024-02-23 13:15:01,076 [pN:main.1,p:74853,tN:WSGI_5] Validated and populated state for tool request (3.879 ms) galaxy.tools.actions INFO 2024-02-23 13:15:01,080 [pN:main.1,p:74853,tN:WSGI_5] Handled output named adaptor_report for tool ncbi_fcs_adaptor (1.139 ms) galaxy.tools.actions INFO 2024-02-23 13:15:01,081 [pN:main.1,p:74853,tN:WSGI_5] Handled output named clean_fasta for tool ncbi_fcs_adaptor (0.765 ms) galaxy.tools.actions DEBUG 2024-02-23 13:15:01,082 [pN:main.1,p:74853,tN:WSGI_5] Tool ncbi_fcs_adaptor output adaptor_log: dataset output filter (advanced['optional_log'] is not None and 'adaptor_log' in advanced['optional_log'].split(',')) failed: 'list' object has no attribute 'split' galaxy.tools.actions INFO 2024-02-23 13:15:01,085 [pN:main.1,p:74853,tN:WSGI_5] Handled output named adaptor_log for tool ncbi_fcs_adaptor (3.009 ms) galaxy.tools.actions DEBUG 2024-02-23 13:15:01,085 [pN:main.1,p:74853,tN:WSGI_5] Tool ncbi_fcs_adaptor output validate_fasta_log: dataset output filter (advanced['optional_log'] is not None and 'validate_fasta_log' in advanced['optional_log'].split(',')) failed: 'list' object has no attribute 'split' galaxy.tools.actions INFO 2024-02-23 13:15:01,087 [pN:main.1,p:74853,tN:WSGI_5] Handled output named validate_fasta_log for tool ncbi_fcs_adaptor (2.524 ms) galaxy.tools.actions INFO 2024-02-23 13:15:01,095 [pN:main.1,p:74853,tN:WSGI_5] Added output datasets to history (7.704 ms) galaxy.tools.actions INFO 2024-02-23 13:15:01,097 [pN:main.1,p:74853,tN:WSGI_5] Setup for job Job[unflushed,tool_id=ncbi_fcs_adaptor] complete, ready to be enqueued (1.987 ms) galaxy.tools.execute DEBUG 2024-02-23 13:15:01,098 [pN:main.1,p:74853,tN:WSGI_5] Tool ncbi_fcs_adaptor created job None (19.842 ms) galaxy.web_stack.handlers INFO 2024-02-23 13:15:01,118 [pN:main.1,p:74853,tN:WSGI_5] (Job[id=4,tool_id=ncbi_fcs_adaptor]) Handler '_default_' assigned using 'HANDLER_ASSIGNMENT_METHODS.DB_SKIP_LOCKED' assignment method galaxy.tools.execute DEBUG 2024-02-23 13:15:01,122 [pN:main.1,p:74853,tN:WSGI_5] Created 1 job(s) for tool ncbi_fcs_adaptor request (46.137 ms) galaxy.jobs.mapper DEBUG 2024-02-23 13:15:02,057 [pN:main.1,p:74853,tN:JobHandlerQueue.monitor_thread] (4) Mapped job to destination id: docker_local galaxy.jobs.handler DEBUG 2024-02-23 13:15:02,060 [pN:main.1,p:74853,tN:JobHandlerQueue.monitor_thread] (4) Dispatching to local runner galaxy.jobs DEBUG 2024-02-23 13:15:02,066 [pN:main.1,p:74853,tN:JobHandlerQueue.monitor_thread] (4) Persisting job destination (destination id: docker_local) galaxy.jobs DEBUG 2024-02-23 13:15:02,072 [pN:main.1,p:74853,tN:JobHandlerQueue.monitor_thread] (4) Working directory for job is: /tmp/tmpj6ure7bs/job_working_directory/000/4 galaxy.jobs.runners DEBUG 2024-02-23 13:15:02,079 [pN:main.1,p:74853,tN:JobHandlerQueue.monitor_thread] Job [4] queued (18.111 ms) galaxy.jobs.handler INFO 2024-02-23 13:15:02,088 [pN:main.1,p:74853,tN:JobHandlerQueue.monitor_thread] (4) Job dispatched galaxy.jobs DEBUG 2024-02-23 13:15:02,136 [pN:main.1,p:74853,tN:LocalRunner.work_thread-3] Job wrapper for Job [4] prepared (38.436 ms) galaxy.tool_util.deps.containers INFO 2024-02-23 13:15:02,137 [pN:main.1,p:74853,tN:LocalRunner.work_thread-3] Checking with container resolver [ExplicitContainerResolver[]] found description [ContainerDescription[identifier=ncbi/fcs-adaptor:0.5.0,type=docker]] galaxy.jobs.command_factory INFO 2024-02-23 13:15:02,175 [pN:main.1,p:74853,tN:LocalRunner.work_thread-3] Built script [/tmp/tmpj6ure7bs/job_working_directory/000/4/tool_script.sh] for tool command [/app/fcs/bin/av_screen_x -o "$(pwd)" '--prok' '/tmp/tmpj6ure7bs/files/a/9/a/dataset_a9a022dd-9347-484e-b0d5-f0e043707b2d.dat'] galaxy.jobs.runners DEBUG 2024-02-23 13:15:02,220 [pN:main.1,p:74853,tN:LocalRunner.work_thread-3] (4) command is: mkdir -p working outputs configs if [ -d _working ]; then rm -rf working/ outputs/ configs/; cp -R _working working; cp -R _outputs outputs; cp -R _configs configs else cp -R working _working; cp -R outputs _outputs; cp -R configs _configs fi cd working; _on_exit() { docker kill cc542df8dde14dfdb8fe7fd463c7c3c7 &> /dev/null } trap _on_exit EXIT docker inspect ncbi/fcs-adaptor:0.5.0 > /dev/null 2>&1 [ $? -ne 0 ] && docker pull ncbi/fcs-adaptor:0.5.0 > /dev/null 2>&1 docker run -e "GALAXY_SLOTS=$GALAXY_SLOTS" -e "GALAXY_MEMORY_MB=$GALAXY_MEMORY_MB" -e "GALAXY_MEMORY_MB_PER_SLOT=$GALAXY_MEMORY_MB_PER_SLOT" -e "HOME=$HOME" -e "_GALAXY_JOB_HOME_DIR=$_GALAXY_JOB_HOME_DIR" -e "_GALAXY_JOB_TMP_DIR=$_GALAXY_JOB_TMP_DIR" -e "TMPDIR=$TMPDIR" -e "TMP=$TMP" -e "TEMP=$TEMP" --name cc542df8dde14dfdb8fe7fd463c7c3c7 -v "$_GALAXY_JOB_TMP_DIR:$_GALAXY_JOB_TMP_DIR:rw" -v "$TMPDIR:$TMPDIR:rw" -v "$TMP:$TMP:rw" -v "$TEMP:$TEMP:rw" -v /scratch/rico/galaxy:/scratch/rico/galaxy:ro -v /scratch/rico/galaxytools/tools/ncbi_fcs_adaptor:/scratch/rico/galaxytools/tools/ncbi_fcs_adaptor:ro -v /tmp/tmpj6ure7bs/job_working_directory/000/4:/tmp/tmpj6ure7bs/job_working_directory/000/4:ro -v /tmp/tmpj6ure7bs/job_working_directory/000/4/outputs:/tmp/tmpj6ure7bs/job_working_directory/000/4/outputs:rw -v "$_GALAXY_JOB_HOME_DIR:$_GALAXY_JOB_HOME_DIR:rw" -v /tmp/tmpj6ure7bs/job_working_directory/000/4/working:/tmp/tmpj6ure7bs/job_working_directory/000/4/working:rw -v /tmp/tmpj6ure7bs/files:/tmp/tmpj6ure7bs/files:ro -v /scratch/rico/galaxy/tool-data:/scratch/rico/galaxy/tool-data:ro --cpus ${GALAXY_SLOTS:-1} -w /tmp/tmpj6ure7bs/job_working_directory/000/4/working --rm --user 1028:1028 ncbi/fcs-adaptor:0.5.0 /bin/sh /tmp/tmpj6ure7bs/job_working_directory/000/4/tool_script.sh > '../outputs/tool_stdout' 2> '../outputs/tool_stderr'; return_code=$?; echo $return_code > /tmp/tmpj6ure7bs/job_working_directory/000/4/galaxy_4.ec; if [ -f "/tmp/tmpj6ure7bs/job_working_directory/000/4/working/fcs_adaptor_report.txt" ] ; then cp "/tmp/tmpj6ure7bs/job_working_directory/000/4/working/fcs_adaptor_report.txt" "/tmp/tmpj6ure7bs/job_working_directory/000/4/outputs/dataset_aacec71b-aada-4032-b6b2-7ee79bb4cb19.dat" ; fi; if [ -f "/tmp/tmpj6ure7bs/job_working_directory/000/4/working/cleaned_sequences/"*".dat" ] ; then cp "/tmp/tmpj6ure7bs/job_working_directory/000/4/working/cleaned_sequences/"*".dat" "/tmp/tmpj6ure7bs/job_working_directory/000/4/outputs/dataset_daeb9588-084d-42b1-90b5-ce31e282c4e3.dat" ; fi; if [ -f "/tmp/tmpj6ure7bs/job_working_directory/000/4/working/fcs_adaptor.log" ] ; then cp "/tmp/tmpj6ure7bs/job_working_directory/000/4/working/fcs_adaptor.log" "/tmp/tmpj6ure7bs/job_working_directory/000/4/outputs/dataset_0cffd599-cd29-4f5b-a831-6a2c8755a186.dat" ; fi; if [ -f "/tmp/tmpj6ure7bs/job_working_directory/000/4/working/validate_fasta.txt" ] ; then cp "/tmp/tmpj6ure7bs/job_working_directory/000/4/working/validate_fasta.txt" "/tmp/tmpj6ure7bs/job_working_directory/000/4/outputs/dataset_bda6dec5-5aa2-49a5-aabb-a3ed847fb7ef.dat" ; fi; cd '/tmp/tmpj6ure7bs/job_working_directory/000/4'; [ "$GALAXY_VIRTUAL_ENV" = "None" ] && GALAXY_VIRTUAL_ENV="$_GALAXY_VIRTUAL_ENV"; _galaxy_setup_environment True; python metadata/set.py; sh -c "exit $return_code" galaxy.jobs.runners.local DEBUG 2024-02-23 13:15:02,244 [pN:main.1,p:74853,tN:LocalRunner.work_thread-3] (4) executing job script: /tmp/tmpj6ure7bs/job_working_directory/000/4/galaxy_4.sh galaxy.jobs.runners.util.process_groups DEBUG 2024-02-23 13:15:50,744 [pN:main.1,p:74853,tN:LocalRunner.work_thread-3] check_pg(): No process found in process group 75513 galaxy.jobs.runners.local DEBUG 2024-02-23 13:15:50,745 [pN:main.1,p:74853,tN:LocalRunner.work_thread-3] execution finished: /tmp/tmpj6ure7bs/job_working_directory/000/4/galaxy_4.sh galaxy.jobs DEBUG 2024-02-23 13:15:50,782 [pN:main.1,p:74853,tN:LocalRunner.work_thread-3] finish(): Moved /tmp/tmpj6ure7bs/job_working_directory/000/4/outputs/dataset_aacec71b-aada-4032-b6b2-7ee79bb4cb19.dat to /tmp/tmpj6ure7bs/files/a/a/c/dataset_aacec71b-aada-4032-b6b2-7ee79bb4cb19.dat galaxy.jobs DEBUG 2024-02-23 13:15:50,782 [pN:main.1,p:74853,tN:LocalRunner.work_thread-3] finish(): Moved /tmp/tmpj6ure7bs/job_working_directory/000/4/outputs/dataset_daeb9588-084d-42b1-90b5-ce31e282c4e3.dat to /tmp/tmpj6ure7bs/files/d/a/e/dataset_daeb9588-084d-42b1-90b5-ce31e282c4e3.dat galaxy.jobs DEBUG 2024-02-23 13:15:50,782 [pN:main.1,p:74853,tN:LocalRunner.work_thread-3] finish(): Moved /tmp/tmpj6ure7bs/job_working_directory/000/4/outputs/dataset_0cffd599-cd29-4f5b-a831-6a2c8755a186.dat to /tmp/tmpj6ure7bs/files/0/c/f/dataset_0cffd599-cd29-4f5b-a831-6a2c8755a186.dat galaxy.jobs DEBUG 2024-02-23 13:15:50,783 [pN:main.1,p:74853,tN:LocalRunner.work_thread-3] finish(): Moved /tmp/tmpj6ure7bs/job_working_directory/000/4/outputs/dataset_bda6dec5-5aa2-49a5-aabb-a3ed847fb7ef.dat to /tmp/tmpj6ure7bs/files/b/d/a/dataset_bda6dec5-5aa2-49a5-aabb-a3ed847fb7ef.dat galaxy.model.metadata DEBUG 2024-02-23 13:15:50,797 [pN:main.1,p:74853,tN:LocalRunner.work_thread-3] loading metadata from file for: HistoryDatasetAssociation 5 galaxy.model.metadata DEBUG 2024-02-23 13:15:50,803 [pN:main.1,p:74853,tN:LocalRunner.work_thread-3] loading metadata from file for: HistoryDatasetAssociation 6 galaxy.model.metadata DEBUG 2024-02-23 13:15:50,810 [pN:main.1,p:74853,tN:LocalRunner.work_thread-3] loading metadata from file for: HistoryDatasetAssociation 7 galaxy.model.metadata DEBUG 2024-02-23 13:15:50,835 [pN:main.1,p:74853,tN:LocalRunner.work_thread-3] loading metadata from file for: HistoryDatasetAssociation 8 galaxy.jobs DEBUG 2024-02-23 13:15:50,899 [pN:main.1,p:74853,tN:LocalRunner.work_thread-3] job_wrapper.finish for job 4 executed (132.845 ms) galaxy.queue_worker INFO 2024-02-23 13:15:53,443 [pN:main.1,p:74853,tN:MainThread] Sending reconfigure_watcher control task. galaxy.util.monitors DEBUG 2024-02-23 13:15:53,458 [pN:main.1,p:74853,tN:MainThread] Joining monitor thread galaxy.jobs.handler INFO 2024-02-23 13:15:53,459 [pN:main.1,p:74853,tN:MainThread] sending stop signal to worker thread galaxy.util.monitors DEBUG 2024-02-23 13:15:53,459 [pN:main.1,p:74853,tN:MainThread] Joining monitor thread galaxy.jobs.handler INFO 2024-02-23 13:15:53,459 [pN:main.1,p:74853,tN:MainThread] job handler queue stopped galaxy.jobs.runners INFO 2024-02-23 13:15:53,459 [pN:main.1,p:74853,tN:MainThread] LocalRunner: Sending stop signal to 4 job worker threads galaxy.jobs.runners INFO 2024-02-23 13:15:53,460 [pN:main.1,p:74853,tN:MainThread] Waiting up to 30 seconds for job worker threads to shutdown... galaxy.jobs.runners DEBUG 2024-02-23 13:15:53,461 [pN:main.1,p:74853,tN:MainThread] Job worker thread terminated: LocalRunner.work_thread-0 galaxy.jobs.runners INFO 2024-02-23 13:15:53,462 [pN:main.1,p:74853,tN:MainThread] All job worker threads shutdown cleanly galaxy.jobs.handler INFO 2024-02-23 13:15:53,462 [pN:main.1,p:74853,tN:MainThread] sending stop signal to worker thread galaxy.util.monitors DEBUG 2024-02-23 13:15:53,462 [pN:main.1,p:74853,tN:MainThread] Joining monitor thread galaxy.jobs.handler INFO 2024-02-23 13:15:53,462 [pN:main.1,p:74853,tN:MainThread] job handler stop queue stopped galaxy.jobs DEBUG 2024-02-23 13:24:43,065 [pN:main,p:76107,tN:MainThread] Loading job configuration from /scratch/rico/galaxytools/tools/ncbi_fcs_adaptor/planemo_job_conf.xml galaxy.jobs DEBUG 2024-02-23 13:24:43,065 [pN:main,p:76107,tN:MainThread] Read job configuration from file: /scratch/rico/galaxytools/tools/ncbi_fcs_adaptor/planemo_job_conf.xml galaxy.web_stack.handlers INFO 2024-02-23 13:24:43,073 [pN:main,p:76107,tN:MainThread] JobConfiguration: No job handler assignment method is set, defaulting to 'HANDLER_ASSIGNMENT_METHODS.DB_SKIP_LOCKED', set the `assign_with` attribute on <handlers> to override the default galaxy.jobs INFO 2024-02-23 13:24:43,073 [pN:main,p:76107,tN:MainThread] Job handler assignment methods set to: db-skip-locked galaxy.web_stack.handlers DEBUG 2024-02-23 13:24:43,074 [pN:main,p:76107,tN:MainThread] default set to child with id or tag 'docker_local' galaxy.jobs DEBUG 2024-02-23 13:24:43,074 [pN:main,p:76107,tN:MainThread] Done loading job configuration galaxy.security.vault WARNING 2024-02-23 13:24:43,193 [pN:main,p:76107,tN:MainThread] No vault configured. We recommend defining the vault_config_file setting in galaxy.yml galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,221 [pN:main,p:76107,tN:MainThread] Loading datatypes from /scratch/rico/galaxy/lib/galaxy/config/sample/datatypes_conf.xml.sample galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,221 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension source.h. galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,221 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension source.c. galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,221 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension source.cpp. galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,221 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension source.py. galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,221 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension source.go. galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,222 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension source.rs. galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,222 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension source.cs. galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,222 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:Binary from the datatype registry for extension hep.root. galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,222 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:JP2 from the datatype registry for extension jp2. galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,222 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:Ab1 from the datatype registry for extension ab1. galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,222 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.assembly:Amos from the datatype registry for extension afg. galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,223 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.goldenpath:GoldenPath from the datatype registry for extension agp. galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,223 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.anvio:AnvioComposite from the datatype registry for extension anvio_cog_profile. galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,223 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.anvio:AnvioComposite from the datatype registry for extension anvio_composite. galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,223 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:Data from the datatype registry for extension anvio_classifier. galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,223 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.anvio:AnvioContigsDB from the datatype registry for extension anvio_contigs_db. galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,223 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.anvio:AnvioDB from the datatype registry for extension anvio_db. galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,224 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.anvio:AnvioGenomesDB from the datatype registry for extension anvio_genomes_db. galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,224 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.anvio:AnvioPanDB from the datatype registry for extension anvio_pan_db. galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,224 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.anvio:AnvioComposite from the datatype registry for extension anvio_pfam_profile. galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,224 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.anvio:AnvioProfileDB from the datatype registry for extension anvio_profile_db. galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,224 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.anvio:AnvioSamplesDB from the datatype registry for extension anvio_samples_db. galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,224 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.text:Json from the datatype registry for extension anvio_state. galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,224 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.anvio:AnvioStructureDB from the datatype registry for extension anvio_structure_db. galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,224 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.tabular:TSV from the datatype registry for extension anvio_variability. galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,224 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.text:Arff from the datatype registry for extension arff. galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,224 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.text:Paf from the datatype registry for extension paf. galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,224 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.text:Gfa1 from the datatype registry for extension gfa1. galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,224 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.text:Gfa2 from the datatype registry for extension gfa2. galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,224 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:GenericAsn1 from the datatype registry for extension asn1. galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,225 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:GenericAsn1Binary from the datatype registry for extension asn1-binary. galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,225 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.sequence:Axt from the datatype registry for extension axt. galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,225 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.tabular:FeatureLocationIndex from the datatype registry for extension fli. galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,225 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:Bam from the datatype registry for extension bam. galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,225 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:Binary from the datatype registry for extension bai. galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,225 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:BamInputSorted from the datatype registry for extension qname_input_sorted.bam. galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,225 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:BamQuerynameSorted from the datatype registry for extension qname_sorted.bam. galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,225 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:BamNative from the datatype registry for extension unsorted.bam. galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,225 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:ProBam from the datatype registry for extension probam. galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,225 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:CRAM from the datatype registry for extension cram. galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,225 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.interval:Bed from the datatype registry for extension bed. galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,225 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.interval:BedGraph from the datatype registry for extension bedgraph. galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,225 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.interval:BedStrict from the datatype registry for extension bedstrict. galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,225 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.interval:Bed6 from the datatype registry for extension bed6. galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,225 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.interval:Bed12 from the datatype registry for extension bed12. galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,226 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.interval:ProBed from the datatype registry for extension probed. galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,226 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.chrominfo:ChromInfo from the datatype registry for extension len. galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,226 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:DAA from the datatype registry for extension daa. galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,226 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:RMA6 from the datatype registry for extension rma6. galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,226 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:DMND from the datatype registry for extension dmnd. galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,226 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:Parquet from the datatype registry for extension parquet. galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,226 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:Idat from the datatype registry for extension idat. galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,226 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:BigBed from the datatype registry for extension bigbed. galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,226 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:BigWig from the datatype registry for extension bigwig. galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,226 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:Binary from the datatype registry for extension cxb. galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,226 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.interval:ChromatinInteractions from the datatype registry for extension chrint. galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,227 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.tabular:CSV from the datatype registry for extension csv. galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,227 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.tabular:TSV from the datatype registry for extension tsv. galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,227 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.tabular:TSV from the datatype registry for extension intermine_tabular. galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,227 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.interval:CustomTrack from the datatype registry for extension customtrack. galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,227 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.ngsindex:BowtieColorIndex from the datatype registry for extension bowtie_color_index. galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,227 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.ngsindex:BowtieBaseIndex from the datatype registry for extension bowtie_base_index. galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,227 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.sequence:csFasta from the datatype registry for extension csfasta. galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,227 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:Data from the datatype registry for extension data. galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,227 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:Binary from the datatype registry for extension gz. galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,227 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:Binary from the datatype registry for extension binary. galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,227 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.text:Json from the datatype registry for extension d3_hierarchy. galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,228 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.text:ImgtJson from the datatype registry for extension imgt.json. galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,228 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.text:GeoJson from the datatype registry for extension geojson. galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,228 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.text:Json from the datatype registry for extension data_manager_json. galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,228 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.sequence:DotBracket from the datatype registry for extension dbn. galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,228 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.tabular:Tabular from the datatype registry for extension fai. galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,228 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.sequence:Fasta from the datatype registry for extension fasta. galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,228 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.sequence:Fastg from the datatype registry for extension fastg. galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,228 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.sequence:Fastq from the datatype registry for extension fastq. galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,228 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.sequence:FastqSanger from the datatype registry for extension fastqsanger. galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,228 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.sequence:FastqSolexa from the datatype registry for extension fastqsolexa. galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,229 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.sequence:FastqCSSanger from the datatype registry for extension fastqcssanger. galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,229 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.sequence:FastqIllumina from the datatype registry for extension fastqillumina. galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,229 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.sequence:SequenceSplitLocations from the datatype registry for extension fqtoc. galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,229 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.tabular:Eland from the datatype registry for extension eland. galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,229 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.tabular:ElandMulti from the datatype registry for extension elandmulti. galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,229 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.tracks:GeneTrack from the datatype registry for extension genetrack. galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,229 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.interval:Gff from the datatype registry for extension gff. galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,229 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.interval:Gff3 from the datatype registry for extension gff3. galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,229 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.images:Gif from the datatype registry for extension gif. galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,230 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.images:Gmaj from the datatype registry for extension gmaj.zip. galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,230 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension graph_dot. galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,230 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.interval:Gtf from the datatype registry for extension gtf. galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,230 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:Binary from the datatype registry for extension toolshed.gz. galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,230 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:Binary from the datatype registry for extension hdf4. galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,230 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:H5 from the datatype registry for extension h5. galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,230 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:H5 from the datatype registry for extension scool. galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,230 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:Grib from the datatype registry for extension grib. galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,230 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:Loom from the datatype registry for extension loom. galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,230 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:Anndata from the datatype registry for extension h5ad. galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,230 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:Visium from the datatype registry for extension visium.tar.gz. galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,230 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:H5 from the datatype registry for extension mz5. galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,230 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.text:Json from the datatype registry for extension hyphy_results.json. galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,230 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.text:Json from the datatype registry for extension hivtrace. galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,231 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:Cool from the datatype registry for extension cool. galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,231 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:MCool from the datatype registry for extension mcool. galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,231 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:H5MLM from the datatype registry for extension h5mlm. galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,231 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:LudwigModel from the datatype registry for extension ludwig_model. galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,231 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.text:Html from the datatype registry for extension html. galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,231 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.text:Html from the datatype registry for extension ludwig_report.html. galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,231 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.interval:Interval from the datatype registry for extension interval. galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,231 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:Binary from the datatype registry for extension jellyfish. galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,231 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:Binary from the datatype registry for extension ktab. galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,231 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:Binary from the datatype registry for extension hist. galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,231 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:Binary from the datatype registry for extension prof. galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,282 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.isa:IsaTab from the datatype registry for extension isa-tab. galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,282 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.isa:IsaJson from the datatype registry for extension isa-json. galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,282 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.tabular:Tabular from the datatype registry for extension picard_interval_list. galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,282 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension gatk_interval. galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,283 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension gatk_report. galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,283 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.tabular:Tabular from the datatype registry for extension gatk_dbsnp. galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,283 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.tabular:Tabular from the datatype registry for extension gatk_tranche. galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,283 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.tabular:Tabular from the datatype registry for extension gatk_recal. galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,283 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.tabular:Tabular from the datatype registry for extension cnn. galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,283 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.tabular:Tabular from the datatype registry for extension cns. galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,283 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.tabular:Tabular from the datatype registry for extension cnr. galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,283 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension hhr. galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,283 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.images:Jpg from the datatype registry for extension jpg. galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,283 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.images:Tiff from the datatype registry for extension tiff. galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,283 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.images:Tiff from the datatype registry for extension tf2. galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,284 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.images:Tiff from the datatype registry for extension tf8. galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,284 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.images:Tiff from the datatype registry for extension btf. galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,284 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.images:Tiff from the datatype registry for extension tif. galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,284 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.images:Tiff from the datatype registry for extension svs. galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,284 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.images:Tiff from the datatype registry for extension scn. galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,284 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.images:Tiff from the datatype registry for extension bif. galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,284 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.images:OMETiff from the datatype registry for extension ome.tiff. galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,284 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.images:Hamamatsu from the datatype registry for extension vms. galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,284 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.images:Hamamatsu from the datatype registry for extension vmu. galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,284 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.images:Hamamatsu from the datatype registry for extension ndpi. galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,284 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.images:Mirax from the datatype registry for extension mrxs. galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,284 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.images:Sakura from the datatype registry for extension svslide. galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,284 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.images:Bmp from the datatype registry for extension bmp. galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,284 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.images:Im from the datatype registry for extension im. galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,284 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.images:Pcd from the datatype registry for extension pcd. galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,285 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.images:Pcx from the datatype registry for extension pcx. galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,285 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.images:Ppm from the datatype registry for extension ppm. galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,285 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.images:Psd from the datatype registry for extension psd. galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,285 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.images:Xbm from the datatype registry for extension xbm. galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,285 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.images:Xpm from the datatype registry for extension xpm. galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,285 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.images:Rgb from the datatype registry for extension rgb. galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,285 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.images:Pbm from the datatype registry for extension pbm. galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,285 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.images:Pgm from the datatype registry for extension pgm. galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,285 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.images:Nrrd from the datatype registry for extension nrrd. galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,285 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.images:Nrrd from the datatype registry for extension nhdr. galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,285 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.sequence:RNADotPlotMatrix from the datatype registry for extension rna_eps. galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,286 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.qiime2:QIIME2Artifact from the datatype registry for extension qza. galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,286 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.qiime2:QIIME2Visualization from the datatype registry for extension qzv. galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,286 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.qiime2:QIIME2Metadata from the datatype registry for extension qiime2.tabular. galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,286 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:CompressedZipArchive from the datatype registry for extension zip. galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,286 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:CompressedZipArchive from the datatype registry for extension ncbi_genome_dataset.zip. galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,286 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:CompressedArchive from the datatype registry for extension tar. galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,286 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:Directory from the datatype registry for extension directory. galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,286 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.text:Yaml from the datatype registry for extension yaml. galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,286 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.tabular:Tabular from the datatype registry for extension mrm. galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,288 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.proteomics:Dta from the datatype registry for extension dta. galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,288 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.proteomics:Dta2d from the datatype registry for extension dta2d. galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,288 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.proteomics:Edta from the datatype registry for extension edta. galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,288 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.proteomics:PepXml from the datatype registry for extension pepxml. galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,288 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.proteomics:PepXml from the datatype registry for extension raw_pepxml. galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,288 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.proteomics:PepXml from the datatype registry for extension peptideprophet_pepxml. galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,288 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.proteomics:PepXml from the datatype registry for extension interprophet_pepxml. galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,288 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.proteomics:ProtXML from the datatype registry for extension protxml. galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,288 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.proteomics:ParamXml from the datatype registry for extension paramxml. galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,288 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.proteomics:Kroenik from the datatype registry for extension kroenik. galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,288 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.proteomics:PepList from the datatype registry for extension peplist. galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,288 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.proteomics:PSMS from the datatype registry for extension psms. galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,288 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.proteomics:PepXmlReport from the datatype registry for extension pepxml.tsv. galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,289 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.proteomics:ProtXmlReport from the datatype registry for extension protxml.tsv. galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,289 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.proteomics:MascotDat from the datatype registry for extension mascotdat. galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,289 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.proteomics:MzIdentML from the datatype registry for extension mzid. galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,289 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.proteomics:IdXML from the datatype registry for extension idxml. galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,289 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.proteomics:TandemXML from the datatype registry for extension tandem. galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,289 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension sirius.ms. galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,289 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.proteomics:ThermoRAW from the datatype registry for extension thermo.raw. galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,289 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:BafTar from the datatype registry for extension brukerbaf.d.tar. galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,289 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:YepTar from the datatype registry for extension agilentbrukeryep.d.tar. galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,289 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:TdfTar from the datatype registry for extension brukertdf.d.tar. galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,289 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:MassHunterTar from the datatype registry for extension agilentmasshunter.d.tar. galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,289 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:MassLynxTar from the datatype registry for extension watersmasslynx.raw.tar. galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,289 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:WiffTar from the datatype registry for extension wiff.tar. galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,289 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:Wiff2Tar from the datatype registry for extension wiff2.tar. galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,289 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.proteomics:MascotXML from the datatype registry for extension mascotxml. galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,289 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.proteomics:MzTab from the datatype registry for extension mztab. galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,289 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.proteomics:MzTab2 from the datatype registry for extension mztab2. galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,290 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.proteomics:MzML from the datatype registry for extension mzml. galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,290 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.proteomics:NmrML from the datatype registry for extension nmrml. galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,290 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:Meryldb from the datatype registry for extension meryldb. galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,290 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:Bref3 from the datatype registry for extension bref3. galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,290 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.proteomics:Mgf from the datatype registry for extension mgf. galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,290 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.proteomics:Wiff from the datatype registry for extension wiff. galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,290 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.proteomics:Wiff2 from the datatype registry for extension wiff2. galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,290 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.proteomics:MzXML from the datatype registry for extension mzxml. galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,290 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.proteomics:MzData from the datatype registry for extension mzdata. galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,290 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.proteomics:Ms2 from the datatype registry for extension ms2. galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,290 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.proteomics:MzQuantML from the datatype registry for extension mzq. galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,290 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:SQlite from the datatype registry for extension sqlite. galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,290 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:MzSQlite from the datatype registry for extension mz.sqlite. galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,290 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:OSW from the datatype registry for extension osw. galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,290 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:PQP from the datatype registry for extension pqp. galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,291 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.proteomics:TraML from the datatype registry for extension traml. galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,291 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.proteomics:TrafoXML from the datatype registry for extension trafoxml. galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,291 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.proteomics:FeatureXML from the datatype registry for extension featurexml. galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,291 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.proteomics:ConsensusXML from the datatype registry for extension consensusxml. galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,291 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.proteomics:UniProtXML from the datatype registry for extension uniprotxml. galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,291 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.proteomics:XquestXML from the datatype registry for extension xquest.xml. galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,291 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.proteomics:XquestSpecXML from the datatype registry for extension spec.xml. galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,291 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.proteomics:QCML from the datatype registry for extension qcml. galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,291 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.text:Json from the datatype registry for extension mzqc. galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,291 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.proteomics:Msp from the datatype registry for extension msp. galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,291 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.proteomics:SPLibNoIndex from the datatype registry for extension splib_noindex. galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,291 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.proteomics:SPLib from the datatype registry for extension splib. galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,291 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:BlibSQlite from the datatype registry for extension blib. galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,291 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:DlibSQlite from the datatype registry for extension dlib. galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,291 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:ElibSQlite from the datatype registry for extension elib. galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,291 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.proteomics:XHunterAslFormat from the datatype registry for extension hlf. galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,292 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:IdpDB from the datatype registry for extension idpdb. galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,292 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.proteomics:Sf3 from the datatype registry for extension sf3. galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,292 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:Binary from the datatype registry for extension cps. galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,292 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.tabular:ConnectivityTable from the datatype registry for extension ct. galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,292 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:PostgresqlArchive from the datatype registry for extension postgresql. galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,292 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:MongoDBArchive from the datatype registry for extension mongodb. galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,292 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:GeneNoteBook from the datatype registry for extension genenotebook. galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,292 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:SearchGuiArchive from the datatype registry for extension searchgui_archive. galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,292 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:Fast5Archive from the datatype registry for extension fast5.tar. galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,292 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:Fast5ArchiveGz from the datatype registry for extension fast5.tar.gz. galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,292 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:Fast5ArchiveBz2 from the datatype registry for extension fast5.tar.bz2. galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,292 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:CompressedArchive from the datatype registry for extension peptideshaker_archive. galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,292 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.tabular:Tabular from the datatype registry for extension percin. galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,292 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.xml:GenericXml from the datatype registry for extension percout. galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,292 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.tabular:Tabular from the datatype registry for extension hardklor. galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,293 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.tabular:Tabular from the datatype registry for extension kronik. galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,293 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.proteomics:ImzML from the datatype registry for extension imzml. galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,293 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.images:Analyze75 from the datatype registry for extension analyze75. galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,293 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.images:Nifti1 from the datatype registry for extension nii1. galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,293 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.images:Nifti2 from the datatype registry for extension nii2. galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,293 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.images:Gifti from the datatype registry for extension gii. galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,293 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.images:Tck from the datatype registry for extension tck. galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,293 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.images:Trk from the datatype registry for extension trk. galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,293 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.images:Mrc2014 from the datatype registry for extension mrc. galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,293 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.images:Star from the datatype registry for extension star. galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,293 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.proteomics:PEFF from the datatype registry for extension peff. galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,293 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension toml. galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,294 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.flow:FCS from the datatype registry for extension fcs. galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,294 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.tabular:Tabular from the datatype registry for extension flowtext. galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,294 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.tabular:Tabular from the datatype registry for extension flowclr. galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,294 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.tabular:Tabular from the datatype registry for extension flowmfi. galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,294 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.tabular:Tabular from the datatype registry for extension flowstat1. galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,294 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.tabular:Tabular from the datatype registry for extension flowstat2. galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,294 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.tabular:Tabular from the datatype registry for extension flowstat3. galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,294 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.tabular:Tabular from the datatype registry for extension flowscore. galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,294 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:RData from the datatype registry for extension flowframe. galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,294 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:RData from the datatype registry for extension fsom. galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,295 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:RData from the datatype registry for extension flowset. galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,295 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.tabular:Tabular from the datatype registry for extension metacyto_clr.txt. galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,295 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.metacyto:mSummary from the datatype registry for extension metacyto_summary.txt. galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,295 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.metacyto:mStats from the datatype registry for extension metacyto_stats.txt. galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,295 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:CompressedArchive from the datatype registry for extension deeptools_compute_matrix_archive. galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,295 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:CompressedArchive from the datatype registry for extension deeptools_coverage_matrix. galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,295 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:NetCDF from the datatype registry for extension netcdf. galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,295 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.images:Eps from the datatype registry for extension eps. galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,295 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.images:Rast from the datatype registry for extension rast. galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,295 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.images:Laj from the datatype registry for extension laj. galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,295 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.sequence:Lav from the datatype registry for extension lav. galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,296 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.sequence:Maf from the datatype registry for extension maf. galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,296 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.sequence:MafCustomTrack from the datatype registry for extension mafcustomtrack. galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,296 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.tabular:MatrixMarket from the datatype registry for extension mtx. galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,296 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.tabular:CMAP from the datatype registry for extension cmap. galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,296 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.interval:ENCODEPeak from the datatype registry for extension encodepeak. galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,296 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.images:Pdf from the datatype registry for extension pdf. galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,296 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.tabular:Pileup from the datatype registry for extension pileup. galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,296 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.tabular:Psl from the datatype registry for extension psl. galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,296 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.text:Obo from the datatype registry for extension obo. galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,296 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.xml:Owl from the datatype registry for extension owl. galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,296 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.images:Png from the datatype registry for extension png. galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,296 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.qualityscore:QualityScore from the datatype registry for extension qual. galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,296 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.qualityscore:QualityScoreSolexa from the datatype registry for extension qualsolexa. galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,296 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.qualityscore:QualityScoreIllumina from the datatype registry for extension qualillumina. galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,296 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.qualityscore:QualityScoreSOLiD from the datatype registry for extension qualsolid. galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,296 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.qualityscore:QualityScore454 from the datatype registry for extension qual454. galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,297 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.assembly:Roadmaps from the datatype registry for extension roadmaps. galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,297 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.tabular:Sam from the datatype registry for extension sam. galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,297 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:Scf from the datatype registry for extension scf. galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,297 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.assembly:Sequences from the datatype registry for extension sequences. galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,297 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.text:SnpEffDb from the datatype registry for extension snpeffdb. galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,297 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.text:SnpSiftDbNSFP from the datatype registry for extension snpsiftdbnsfp. galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,297 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.tabular:Tabular from the datatype registry for extension dbnsfp.tabular. galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,297 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:Sff from the datatype registry for extension sff. galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,297 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:Sra from the datatype registry for extension sra. galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,297 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.tabular:SraManifest from the datatype registry for extension sra_manifest.tabular. galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,297 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.xml:GenericXml from the datatype registry for extension svg. galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,297 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.tabular:Taxonomy from the datatype registry for extension taxonomy. galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,297 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.tabular:Tabular from the datatype registry for extension tabular. galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,298 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:TwoBit from the datatype registry for extension twobit. galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,298 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:SQmass from the datatype registry for extension sqmass. galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,298 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:GeminiSQLite from the datatype registry for extension gemini.sqlite. galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,298 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:ChiraSQLite from the datatype registry for extension chira.sqlite. galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,298 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:CuffDiffSQlite from the datatype registry for extension cuffdiff.sqlite. galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,298 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:GAFASQLite from the datatype registry for extension gafa.sqlite. galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,298 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:NcbiTaxonomySQlite from the datatype registry for extension ncbitaxonomy.sqlite. galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,298 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension txt. galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,298 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:LineCount from the datatype registry for extension linecount. galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,298 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.sequence:MemePsp from the datatype registry for extension memepsp. galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,298 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.xml:MEMEXml from the datatype registry for extension memexml. galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,298 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.xml:CisML from the datatype registry for extension cisml. galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,298 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.xml:GenericXml from the datatype registry for extension xml. galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,298 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.xml:GenericXml from the datatype registry for extension xsd. galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,298 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.xml:Dzi from the datatype registry for extension dzi. galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,298 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.tabular:Vcf from the datatype registry for extension vcf. galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,299 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:Bcf from the datatype registry for extension bcf. galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,299 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:Bcf from the datatype registry for extension bcf_bgzip. galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,299 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:BcfUncompressed from the datatype registry for extension bcf_uncompressed. galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,299 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.assembly:Velvet from the datatype registry for extension velvet. galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,299 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.interval:Wiggle from the datatype registry for extension wig. galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,300 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:Binary from the datatype registry for extension interval_index. galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,300 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:Binary from the datatype registry for extension odgi. galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,300 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:CompressedArchive from the datatype registry for extension vg. galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,300 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:Binary from the datatype registry for extension xg. galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,300 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:Binary from the datatype registry for extension protobuf2. galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,300 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:Binary from the datatype registry for extension protobuf3. galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,300 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:Binary from the datatype registry for extension onnx. galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,300 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:Binary from the datatype registry for extension tabix. galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,300 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.interval:IntervalTabix from the datatype registry for extension interval_tabix.gz. galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,300 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.interval:JuicerMediumTabix from the datatype registry for extension juicer_medium_tabix.gz. galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,300 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.interval:BedTabix from the datatype registry for extension bed_tabix.gz. galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,300 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.interval:GffTabix from the datatype registry for extension gff_tabix.gz. galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,300 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:Binary from the datatype registry for extension bgzip. galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,301 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.tabular:VcfGz from the datatype registry for extension vcf_bgzip. galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,301 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:Binary from the datatype registry for extension bus. galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,301 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:Binary from the datatype registry for extension kallisto.idx. galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,301 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.xml:Phyloxml from the datatype registry for extension phyloxml. galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,301 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:Newick from the datatype registry for extension newick. galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,301 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:Newick from the datatype registry for extension nhx. galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,301 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:Nexus from the datatype registry for extension nex. galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,301 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.text:IQTree from the datatype registry for extension iqtree. galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,302 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.mothur:SquareDistanceMatrix from the datatype registry for extension mldist. galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,304 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.genetics:Affybatch from the datatype registry for extension affybatch. galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,304 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.genetics:Eigenstratgeno from the datatype registry for extension eigenstratgeno. galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,304 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.genetics:Eigenstratpca from the datatype registry for extension eigenstratpca. galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,304 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.genetics:Eset from the datatype registry for extension eset. galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,304 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.genetics:Fped from the datatype registry for extension fped. galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,304 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.genetics:Fphe from the datatype registry for extension fphe. galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,304 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.genetics:GenomeGraphs from the datatype registry for extension gg. galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,304 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.genetics:ldIndep from the datatype registry for extension ldindep. galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,304 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.genetics:MAlist from the datatype registry for extension malist. galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,304 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.genetics:Lped from the datatype registry for extension lped. galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,304 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.genetics:Pbed from the datatype registry for extension pbed. galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,304 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.genetics:Pheno from the datatype registry for extension pheno. galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,305 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.genetics:Pphe from the datatype registry for extension pphe. galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,305 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.genetics:RexpBase from the datatype registry for extension rexpbase. galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,305 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.genetics:Rgenetics from the datatype registry for extension rgenetics. galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,305 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.genetics:Snptest from the datatype registry for extension snptest. galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,305 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.genetics:SNPMatrix from the datatype registry for extension snpmatrix. galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,305 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:ExcelXls from the datatype registry for extension xls. galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,305 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.text:Ipynb from the datatype registry for extension ipynb. galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,305 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.text:Json from the datatype registry for extension json. galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,305 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.text:ExpressionJson from the datatype registry for extension expression.json. galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,306 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.graph:Xgmml from the datatype registry for extension xgmml. galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,306 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.graph:Sif from the datatype registry for extension sif. galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,306 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.triples:Triples from the datatype registry for extension triples. galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,306 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.triples:HDT from the datatype registry for extension hdt. galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,306 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.triples:NTriples from the datatype registry for extension nt. galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,306 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.triples:N3 from the datatype registry for extension n3. galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,307 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.triples:Turtle from the datatype registry for extension ttl. galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,307 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.triples:Rdf from the datatype registry for extension rdf. galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,307 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.triples:Jsonld from the datatype registry for extension jsonld. galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,307 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:ExcelXls from the datatype registry for extension excel.xls. galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,307 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:Xlsx from the datatype registry for extension xlsx. galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,307 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:Binary from the datatype registry for extension docx. galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,307 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension btwisted. galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,307 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension cai. galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,307 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension cat_db. galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,307 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension charge. galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,307 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension checktrans. galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,307 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension chips. galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,307 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension codcmp. galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,308 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension coderet. galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,308 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension compseq. galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,308 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension cpgplot. galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,308 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension cpgreport. galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,308 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension cusp. galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,308 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension cut. galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,308 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension dan. galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,308 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension digest. galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,308 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension dreg. galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,308 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension einverted. galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,308 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension epestfind. galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,308 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension equicktandem. galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,308 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension est2genome. galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,308 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension etandem. galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,309 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension freak. galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,309 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension fuzznuc. galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,309 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension fuzzpro. galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,309 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension fuzztran. galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,309 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension garnier. galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,309 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension geecee. galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,309 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension helixturnhelix. galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,309 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension hmoment. galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,309 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension isochore. galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,309 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension match. galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,309 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension nametable. galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,309 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension needle. galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,309 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension newcpgreport. galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,309 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension newcpgseek. galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,310 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension noreturn. galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,310 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension palindrome. galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,310 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension pepcoil. galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,310 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension pepinfo. galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,310 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension pepstats. galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,310 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension polydot. galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,310 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension preg. galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,310 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension prettyseq. galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,310 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension primersearch. galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,310 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension showfeat. galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,310 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension showorf. galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,310 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension sixpack. galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,310 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension strider. galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,310 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension supermatcher. galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,311 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension syco. galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,311 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension textsearch. galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,311 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension vectorstrip. galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,311 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension wobble. galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,311 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension wordcount. galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,311 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension dbmotif. galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,311 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension diffseq. galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,311 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension excel. galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,311 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension feattable. galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,311 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension motif. galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,311 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension regions. galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,311 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension seqtable. galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,311 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension simple. galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,311 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension table. galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,312 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension tagseq. galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,312 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension acedb. galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,312 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension clustal. galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,312 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension codata. galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,312 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension embl. galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,312 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension fitch. galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,312 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension gcg. galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,312 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.sequence:Genbank from the datatype registry for extension genbank. galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,312 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension hennig86. galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,312 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension ig. galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,312 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension jackknifer. galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,312 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension jackknifernon. galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,312 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension mega. galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,313 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension meganon. galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,313 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension ncbi. galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,313 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension nexus. galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,313 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension nexusnon. galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,313 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.phylip:Phylip from the datatype registry for extension phylip. galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,313 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension phylipnon. galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,313 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension pir. galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,313 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension staden. galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,313 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension swiss. galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,314 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.msa:Msf from the datatype registry for extension msf. galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,314 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension markx0. galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,314 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension markx1. galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,314 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension markx10. galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,314 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension markx2. galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,314 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension markx3. galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,314 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension pair. galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,315 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension score. galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,315 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension srs. galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,315 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension srspair. galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,315 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.annotation:SnapHmm from the datatype registry for extension snaphmm. galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,315 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.annotation:Augustus from the datatype registry for extension augustus. galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,315 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:ICM from the datatype registry for extension icm. galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,315 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.msa:InfernalCM from the datatype registry for extension cm. galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,315 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.msa:Hmmer2 from the datatype registry for extension hmm2. galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,315 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.msa:Hmmer3 from the datatype registry for extension hmm3. galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,315 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.msa:Stockholm_1_0 from the datatype registry for extension stockholm. galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,315 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.msa:MauveXmfa from the datatype registry for extension xmfa. galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,316 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.microarrays:Cel from the datatype registry for extension cel. galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,316 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.microarrays:Gpr from the datatype registry for extension gpr. galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,316 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.microarrays:Gal from the datatype registry for extension gal. galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,316 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:RDS from the datatype registry for extension rds. galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,316 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:RDS from the datatype registry for extension phyloseq. galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,316 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:RData from the datatype registry for extension rdata. galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,316 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:RData from the datatype registry for extension rdata.sce. galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,316 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:RData from the datatype registry for extension rdata.xcms.raw. galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,316 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:RData from the datatype registry for extension rdata.msnbase.raw. galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,316 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:RData from the datatype registry for extension rdata.xcms.findchrompeaks. galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,317 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:RData from the datatype registry for extension rdata.xcms.group. galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,317 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:RData from the datatype registry for extension rdata.xcms.retcor. galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,317 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:RData from the datatype registry for extension rdata.xcms.fillpeaks. galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,317 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:RData from the datatype registry for extension rdata.camera.positive. galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,317 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:RData from the datatype registry for extension rdata.camera.negative. galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,317 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:RData from the datatype registry for extension rdata.camera.quick. galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,317 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.hdf5:HDF5SummarizedExperiment from the datatype registry for extension rdata.se. galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,317 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:Binary from the datatype registry for extension rdock_as. galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,317 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:OxliCountGraph from the datatype registry for extension oxlicg. galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,317 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:OxliNodeGraph from the datatype registry for extension oxling. galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,317 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:OxliTagSet from the datatype registry for extension oxlits. galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,318 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:OxliStopTags from the datatype registry for extension oxlist. galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,318 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:OxliSubset from the datatype registry for extension oxliss. galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,318 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:OxliGraphLabels from the datatype registry for extension oxligl. galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,318 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.constructive_solid_geometry:STL from the datatype registry for extension stl. galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,319 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.constructive_solid_geometry:PlyAscii from the datatype registry for extension plyascii. galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,319 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.constructive_solid_geometry:PlyBinary from the datatype registry for extension plybinary. galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,319 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.constructive_solid_geometry:VtkAscii from the datatype registry for extension vtkascii. galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,319 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.constructive_solid_geometry:VtkBinary from the datatype registry for extension vtkbinary. galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,319 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.text:Biom1 from the datatype registry for extension biom1. galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,319 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:Biom2 from the datatype registry for extension biom2. galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,319 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:MashSketch from the datatype registry for extension msh. galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,319 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.interval:ScIdx from the datatype registry for extension scidx. galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,320 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.molecules:SMILES from the datatype registry for extension smi. galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,320 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.molecules:SDF from the datatype registry for extension sdf. galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,320 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.molecules:InChI from the datatype registry for extension inchi. galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,320 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.molecules:MOL from the datatype registry for extension mol. galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,321 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.molecules:MOL2 from the datatype registry for extension mol2. galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,321 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.molecules:CML from the datatype registry for extension cml. galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,321 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.molecules:FPS from the datatype registry for extension fps. galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,321 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.molecules:OBFS from the datatype registry for extension obfs. galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,321 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.molecules:DRF from the datatype registry for extension drf. galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,321 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.molecules:PHAR from the datatype registry for extension phar. galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,321 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.molecules:PDB from the datatype registry for extension pdb. galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,321 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.molecules:PDBQT from the datatype registry for extension pdbqt. galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,321 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.molecules:PQR from the datatype registry for extension pqr. galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,321 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.molecules:Cell from the datatype registry for extension cell. galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,321 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.molecules:CIF from the datatype registry for extension cif. galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,321 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.molecules:XYZ from the datatype registry for extension xyz. galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,321 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.molecules:ExtendedXYZ from the datatype registry for extension extxyz. galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,321 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:Trr from the datatype registry for extension trr. galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,321 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:Dcd from the datatype registry for extension dcd. galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,321 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension top. galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,322 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension prmtop. galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,322 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension itp. galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,322 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension mdp. galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,322 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension ndx. galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,322 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension xvg. galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,322 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:Xtc from the datatype registry for extension xtc. galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,322 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:Cpt from the datatype registry for extension cpt. galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,322 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:Edr from the datatype registry for extension edr. galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,322 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:Binary from the datatype registry for extension tpr. galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,322 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.molecules:GRO from the datatype registry for extension gro. galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,322 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension inpcrd. galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,322 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:Vel from the datatype registry for extension vel. galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,322 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.molecules:grd from the datatype registry for extension grd. galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,322 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.molecules:grdtgz from the datatype registry for extension grd.tgz. galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,323 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.mothur:Otu from the datatype registry for extension mothur.otu. galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,323 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.mothur:Otu from the datatype registry for extension mothur.list. galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,323 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.mothur:Sabund from the datatype registry for extension mothur.sabund. galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,323 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.mothur:Sabund from the datatype registry for extension mothur.rabund. galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,323 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.mothur:GroupAbund from the datatype registry for extension mothur.shared. galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,323 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.mothur:GroupAbund from the datatype registry for extension mothur.relabund. galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,323 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.mothur:Names from the datatype registry for extension mothur.names. galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,323 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.mothur:Group from the datatype registry for extension mothur.design. galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,323 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.mothur:Summary from the datatype registry for extension mothur.summary. galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,323 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.mothur:Group from the datatype registry for extension mothur.groups. galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,323 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.mothur:Oligos from the datatype registry for extension mothur.oligos. galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,323 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.sequence:Fasta from the datatype registry for extension mothur.align. galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,323 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.mothur:AccNos from the datatype registry for extension mothur.accnos. galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,323 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.mothur:AccNos from the datatype registry for extension mothur.otulabels. galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,324 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.tabular:Tabular from the datatype registry for extension mothur.otu.corr. galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,324 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.mothur:SecondaryStructureMap from the datatype registry for extension mothur.map. galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,324 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.mothur:AlignCheck from the datatype registry for extension mothur.align.check. galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,324 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.mothur:AlignReport from the datatype registry for extension mothur.align.report. galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,324 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.mothur:LaneMask from the datatype registry for extension mothur.filter. galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,324 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.mothur:DistanceMatrix from the datatype registry for extension mothur.dist. galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,324 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension mothur.tre. galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,324 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.mothur:PairwiseDistanceMatrix from the datatype registry for extension mothur.pair.dist. galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,324 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.mothur:SquareDistanceMatrix from the datatype registry for extension mothur.square.dist. galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,324 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.mothur:LowerTriangleDistanceMatrix from the datatype registry for extension mothur.lower.dist. galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,324 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.mothur:RefTaxonomy from the datatype registry for extension mothur.ref.taxonomy. galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,324 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.mothur:RefTaxonomy from the datatype registry for extension mothur.seq.taxonomy. galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,324 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.mothur:RefTaxonomy from the datatype registry for extension mothur.rdp.taxonomy. galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,324 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.mothur:ConsensusTaxonomy from the datatype registry for extension mothur.cons.taxonomy. galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,325 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.mothur:TaxonomySummary from the datatype registry for extension mothur.tax.summary. galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,325 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.mothur:Frequency from the datatype registry for extension mothur.freq. galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,325 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.mothur:Quantile from the datatype registry for extension mothur.quan. galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,325 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.mothur:Quantile from the datatype registry for extension mothur.filtered.quan. galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,325 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.mothur:Quantile from the datatype registry for extension mothur.masked.quan. galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,325 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.mothur:Quantile from the datatype registry for extension mothur.filtered.masked.quan. galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,325 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.mothur:Axes from the datatype registry for extension mothur.axes. galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,325 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.mothur:SffFlow from the datatype registry for extension mothur.sff.flow. galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,325 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.mothur:CountTable from the datatype registry for extension mothur.count_table. galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,325 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.neo4j:Neo4jDB from the datatype registry for extension neostore. galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,326 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.neo4j:Neo4jDBzip from the datatype registry for extension neostore.zip. galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,326 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.tracks:UCSCTrackHub from the datatype registry for extension trackhub. galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,326 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.blast:BlastXml from the datatype registry for extension blastxml. galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,326 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.blast:BlastNucDb from the datatype registry for extension blastdbn. galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,326 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.blast:BlastProtDb from the datatype registry for extension blastdbp. galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,326 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.blast:BlastDomainDb from the datatype registry for extension blastdbd. galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,327 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.blast:LastDb from the datatype registry for extension lastdb. galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,327 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.blast:BlastNucDb5 from the datatype registry for extension blastdbn5. galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,327 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.blast:BlastProtDb5 from the datatype registry for extension blastdbp5. galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,327 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.blast:BlastDomainDb5 from the datatype registry for extension blastdbd5. galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,327 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:GenericAsn1 from the datatype registry for extension maskinfo-asn1. galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,327 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:GenericAsn1Binary from the datatype registry for extension maskinfo-asn1-binary. galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,327 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:GenericAsn1 from the datatype registry for extension pssm-asn1. galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,327 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.plant_tribes:PlantTribesKsComponents from the datatype registry for extension ptkscmp. galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,327 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.plant_tribes:Smat from the datatype registry for extension smat. galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,328 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.genetics:GenotypeMatrix from the datatype registry for extension alohomora_gts. galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,328 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.tabular:Tabular from the datatype registry for extension alohomora_map. galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,328 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.tabular:Tabular from the datatype registry for extension alohomora_maf. galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,328 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.tabular:Tabular from the datatype registry for extension alohomora_ped. galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,328 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.tabular:Tabular from the datatype registry for extension linkage_pedin. galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,328 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.genetics:DataIn from the datatype registry for extension linkage_datain. galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,328 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.genetics:MarkerMap from the datatype registry for extension linkage_map. galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,328 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.tabular:Tabular from the datatype registry for extension allegro_ihaplo. galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,328 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.tabular:Tabular from the datatype registry for extension allegro_descent. galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,328 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.genetics:AllegroLOD from the datatype registry for extension allegro_fparam. galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,328 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.genetics:IdeasPre from the datatype registry for extension ideaspre. galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,328 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.xml:Sbml from the datatype registry for extension sbml. galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,329 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.spaln:SpalnNuclDb from the datatype registry for extension spalndbnp. galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,329 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.spaln:SpalnProtDb from the datatype registry for extension spalndba. galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,329 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:RDS from the datatype registry for extension dada2_dada. galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,329 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:RDS from the datatype registry for extension dada2_errorrates. galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,330 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:RDS from the datatype registry for extension dada2_mergepairs. galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,330 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.tabular:Tabular from the datatype registry for extension dada2_sequencetable. galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,330 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.tabular:Tabular from the datatype registry for extension dada2_uniques. galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,330 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:RDS from the datatype registry for extension ampvis2. galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,330 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:Binary from the datatype registry for extension ckpt. galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,330 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:Binary from the datatype registry for extension tgz. galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,331 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.media:Wav from the datatype registry for extension wav. galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,332 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.media:Mp3 from the datatype registry for extension mp3. galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,332 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.media:Mkv from the datatype registry for extension mkv. galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,332 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.media:Mp4 from the datatype registry for extension mp4. galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,332 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.media:Flv from the datatype registry for extension flv. galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,332 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.media:Mpg from the datatype registry for extension mpg. galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,332 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.speech:TextGrid from the datatype registry for extension textgrid. galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,332 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.speech:BPF from the datatype registry for extension par. galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,332 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.tabular:Tabular from the datatype registry for extension ffindex. galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,332 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:Data from the datatype registry for extension ffdata. galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,332 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:Pretext from the datatype registry for extension pretext. galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,332 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.text:Html from the datatype registry for extension immuneml_receptors.html. galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,332 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:HexrdMaterials from the datatype registry for extension hexrd.materials.h5. galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,333 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:Npz from the datatype registry for extension npz. galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,333 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:HexrdImagesNpz from the datatype registry for extension hexrd.images.npz. galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,333 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:HexrdEtaOmeNpz from the datatype registry for extension hexrd.eta_ome.npz. galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,333 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:Npz from the datatype registry for extension hexrd.scored_orientations.npz. galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,333 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.tabular:Tabular from the datatype registry for extension hexrd.accepted_orientations. galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,333 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.text:Yaml from the datatype registry for extension hexrd.yml. galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,333 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.constructive_solid_geometry:NeperTess from the datatype registry for extension neper.tess. galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,333 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.constructive_solid_geometry:NeperTesr from the datatype registry for extension neper.tesr. galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,333 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.constructive_solid_geometry:NeperPoints from the datatype registry for extension neper.points. galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,333 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.constructive_solid_geometry:NeperPointsTabular from the datatype registry for extension neper.points.tsv. galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,333 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.constructive_solid_geometry:NeperMultiScaleCell from the datatype registry for extension neper.mscell. galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,333 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.constructive_solid_geometry:GmshMsh from the datatype registry for extension gmsh.msh. galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,333 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.constructive_solid_geometry:GmshGeo from the datatype registry for extension gmsh.geo. galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,333 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.constructive_solid_geometry:ZsetGeof from the datatype registry for extension zset.geof. galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,334 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:Binary from the datatype registry for extension stl. galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,334 [pN:main,p:76107,tN:MainThread] Overriding conflicting datatype with extension 'stl', using datatype from /scratch/rico/galaxy/lib/galaxy/config/sample/datatypes_conf.xml.sample. galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,334 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.text:Text from the datatype registry for extension pov. galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,334 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.text:PithyaResult from the datatype registry for extension pithya.result. galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,334 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.text:PithyaProperty from the datatype registry for extension pithya.property. galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,334 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.text:PithyaModel from the datatype registry for extension pithya.model. galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,334 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.text:BCSLts from the datatype registry for extension bcsl.ts. galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,334 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.text:BCSLmodel from the datatype registry for extension bcsl.model. galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,334 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.text:StormSample from the datatype registry for extension storm.sample. galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,334 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.text:StormCheck from the datatype registry for extension storm.check. galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,334 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.text:CTLresult from the datatype registry for extension ctl.result. galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,334 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.text:Castep from the datatype registry for extension castep. galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,334 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.text:Param from the datatype registry for extension param. galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,334 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.text:FormattedDensity from the datatype registry for extension den_fmt. galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,335 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.larch:AthenaProject from the datatype registry for extension prj. galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,335 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.larch:FEFFInput from the datatype registry for extension inp. galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,335 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.tabular:CSV from the datatype registry for extension sp. galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,335 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.tabular:CSV from the datatype registry for extension gds. galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,335 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.tabular:CSV from the datatype registry for extension feff. galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,335 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension feffit. galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,335 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:Binary from the datatype registry for extension bil. galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,335 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension hdr. galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,335 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.gis:Shapefile from the datatype registry for extension shp. galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,336 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:FITS from the datatype registry for extension fits. galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,336 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.chain:Chain from the datatype registry for extension chain. galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,336 [pN:main,p:76107,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.plant_tribes:PlantTribesKsComponents' galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,336 [pN:main,p:76107,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.plant_tribes:Smat' galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,336 [pN:main,p:76107,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.mothur:Sabund' galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,336 [pN:main,p:76107,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.mothur:Otu' galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,336 [pN:main,p:76107,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.mothur:GroupAbund' galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,336 [pN:main,p:76107,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.mothur:SecondaryStructureMap' galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,336 [pN:main,p:76107,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.mothur:LowerTriangleDistanceMatrix' galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,336 [pN:main,p:76107,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.mothur:SquareDistanceMatrix' galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,336 [pN:main,p:76107,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.mothur:PairwiseDistanceMatrix' galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,336 [pN:main,p:76107,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.mothur:Oligos' galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,336 [pN:main,p:76107,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.mothur:Quantile' galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,336 [pN:main,p:76107,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.mothur:Frequency' galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,336 [pN:main,p:76107,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.mothur:LaneMask' galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,337 [pN:main,p:76107,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.mothur:RefTaxonomy' galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,337 [pN:main,p:76107,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.mothur:Axes' galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,337 [pN:main,p:76107,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.constructive_solid_geometry:PlyAscii' galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,337 [pN:main,p:76107,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.constructive_solid_geometry:PlyBinary' galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,337 [pN:main,p:76107,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.constructive_solid_geometry:VtkAscii' galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,337 [pN:main,p:76107,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.constructive_solid_geometry:VtkBinary' galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,337 [pN:main,p:76107,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.constructive_solid_geometry:NeperTess' galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,337 [pN:main,p:76107,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.constructive_solid_geometry:NeperTesr' galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,337 [pN:main,p:76107,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.constructive_solid_geometry:GmshMsh' galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,337 [pN:main,p:76107,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.goldenpath:GoldenPath' galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,337 [pN:main,p:76107,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.interval:ScIdx' galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,337 [pN:main,p:76107,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.tabular:Vcf' galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,337 [pN:main,p:76107,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.binary:JP2' galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,337 [pN:main,p:76107,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.binary:TwoBit' galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,337 [pN:main,p:76107,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.binary:GeminiSQLite' galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,337 [pN:main,p:76107,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.binary:SQmass' galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,337 [pN:main,p:76107,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.binary:MzSQlite' galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,337 [pN:main,p:76107,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.binary:OSW' galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,337 [pN:main,p:76107,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.binary:PQP' galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,337 [pN:main,p:76107,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.binary:IdpDB' galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,337 [pN:main,p:76107,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.binary:ElibSQlite' galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,337 [pN:main,p:76107,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.binary:DlibSQlite' galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,337 [pN:main,p:76107,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.binary:BlibSQlite' galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,337 [pN:main,p:76107,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.binary:ChiraSQLite' galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,337 [pN:main,p:76107,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.binary:CuffDiffSQlite' galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,337 [pN:main,p:76107,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.binary:GAFASQLite' galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,337 [pN:main,p:76107,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.binary:NcbiTaxonomySQlite' galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,338 [pN:main,p:76107,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.binary:SQlite' galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,338 [pN:main,p:76107,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.binary:H5MLM' galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,338 [pN:main,p:76107,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.binary:Cool' galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,338 [pN:main,p:76107,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.binary:MCool' galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,338 [pN:main,p:76107,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.binary:Loom' galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,338 [pN:main,p:76107,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.binary:Anndata' galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,338 [pN:main,p:76107,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.binary:Biom2' galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,338 [pN:main,p:76107,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.binary:HexrdMaterials' galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,338 [pN:main,p:76107,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.binary:H5' galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,338 [pN:main,p:76107,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.binary:Grib' galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,338 [pN:main,p:76107,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.binary:HexrdImagesNpz' galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,338 [pN:main,p:76107,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.binary:HexrdEtaOmeNpz' galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,338 [pN:main,p:76107,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.binary:Npz' galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,338 [pN:main,p:76107,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.binary:Bam' galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,338 [pN:main,p:76107,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.binary:BamQuerynameSorted' galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,338 [pN:main,p:76107,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.binary:BamNative' galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,338 [pN:main,p:76107,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.binary:CRAM' galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,338 [pN:main,p:76107,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.binary:Sff' galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,338 [pN:main,p:76107,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.binary:Sra' galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,338 [pN:main,p:76107,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.binary:NetCDF' galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,338 [pN:main,p:76107,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.binary:DAA' galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,338 [pN:main,p:76107,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.binary:RMA6' galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,338 [pN:main,p:76107,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.binary:DMND' galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,338 [pN:main,p:76107,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.binary:Parquet' galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,338 [pN:main,p:76107,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.binary:BafTar' galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,338 [pN:main,p:76107,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.binary:TdfTar' galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,338 [pN:main,p:76107,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.binary:MassHunterTar' galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,339 [pN:main,p:76107,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.binary:MassLynxTar' galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,339 [pN:main,p:76107,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.binary:YepTar' galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,339 [pN:main,p:76107,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.binary:WiffTar' galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,339 [pN:main,p:76107,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.binary:Fast5ArchiveGz' galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,339 [pN:main,p:76107,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.binary:Fast5ArchiveBz2' galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,339 [pN:main,p:76107,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.binary:Fast5Archive' galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,339 [pN:main,p:76107,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.binary:Meryldb' galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,339 [pN:main,p:76107,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.binary:Bref3' galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,339 [pN:main,p:76107,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.binary:PostgresqlArchive' galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,339 [pN:main,p:76107,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.binary:ICM' galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,339 [pN:main,p:76107,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.binary:Idat' galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,339 [pN:main,p:76107,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.binary:Trr' galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,339 [pN:main,p:76107,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.binary:Dcd' galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,339 [pN:main,p:76107,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.binary:Xtc' galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,339 [pN:main,p:76107,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.binary:Cpt' galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,339 [pN:main,p:76107,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.binary:Edr' galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,339 [pN:main,p:76107,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.binary:Vel' galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,339 [pN:main,p:76107,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.binary:Xlsx' galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,339 [pN:main,p:76107,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.qiime2:QIIME2Metadata' galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,339 [pN:main,p:76107,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.qiime2:QIIME2Artifact' galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,339 [pN:main,p:76107,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.qiime2:QIIME2Visualization' galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,339 [pN:main,p:76107,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.binary:CompressedZipArchive' galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,339 [pN:main,p:76107,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.binary:Pretext' galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,339 [pN:main,p:76107,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.annotation:Augustus' galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,339 [pN:main,p:76107,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.xml:Owl' galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,340 [pN:main,p:76107,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.chain:Chain' galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,340 [pN:main,p:76107,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.triples:Rdf' galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,340 [pN:main,p:76107,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.blast:BlastXml' galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,340 [pN:main,p:76107,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.images:Gifti' galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,340 [pN:main,p:76107,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.xml:Phyloxml' galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,340 [pN:main,p:76107,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.xml:Dzi' galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,340 [pN:main,p:76107,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.xml:Sbml' galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,340 [pN:main,p:76107,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.proteomics:Dta2d' galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,340 [pN:main,p:76107,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.proteomics:Edta' galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,340 [pN:main,p:76107,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.proteomics:ConsensusXML' galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,340 [pN:main,p:76107,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.proteomics:IdXML' galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,340 [pN:main,p:76107,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.proteomics:FeatureXML' galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,340 [pN:main,p:76107,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.proteomics:MascotXML' galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,340 [pN:main,p:76107,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.proteomics:Mgf' galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,340 [pN:main,p:76107,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.proteomics:Ms2' galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,340 [pN:main,p:76107,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.proteomics:Msp' galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,340 [pN:main,p:76107,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.proteomics:MzData' galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,340 [pN:main,p:76107,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.proteomics:MzIdentML' galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,340 [pN:main,p:76107,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.proteomics:MzML' galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,340 [pN:main,p:76107,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.proteomics:MzQuantML' galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,340 [pN:main,p:76107,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.proteomics:MzTab' galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,340 [pN:main,p:76107,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.proteomics:MzTab2' galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,340 [pN:main,p:76107,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.proteomics:ParamXml' galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,340 [pN:main,p:76107,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.proteomics:MzXML' galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,341 [pN:main,p:76107,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.proteomics:NmrML' galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,341 [pN:main,p:76107,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.proteomics:Kroenik' galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,341 [pN:main,p:76107,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.proteomics:PepList' galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,341 [pN:main,p:76107,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.proteomics:PSMS' galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,341 [pN:main,p:76107,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.proteomics:PepXml' galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,341 [pN:main,p:76107,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.proteomics:ProtXML' galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,341 [pN:main,p:76107,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.proteomics:SPLib' galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,341 [pN:main,p:76107,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.proteomics:TandemXML' galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,341 [pN:main,p:76107,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.proteomics:ThermoRAW' galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,341 [pN:main,p:76107,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.proteomics:TraML' galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,341 [pN:main,p:76107,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.proteomics:TrafoXML' galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,341 [pN:main,p:76107,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.proteomics:UniProtXML' galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,341 [pN:main,p:76107,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.proteomics:XquestXML' galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,341 [pN:main,p:76107,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.proteomics:XquestSpecXML' galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,341 [pN:main,p:76107,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.proteomics:QCML' galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,341 [pN:main,p:76107,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.proteomics:Wiff' galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,341 [pN:main,p:76107,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.proteomics:PEFF' galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,341 [pN:main,p:76107,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.molecules:CML' galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,341 [pN:main,p:76107,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.xml:GenericXml' galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,341 [pN:main,p:76107,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.triples:HDT' galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,341 [pN:main,p:76107,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.triples:Turtle' galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,341 [pN:main,p:76107,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.triples:NTriples' galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,342 [pN:main,p:76107,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.triples:Jsonld' galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,342 [pN:main,p:76107,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.sequence:Maf' galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,342 [pN:main,p:76107,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.sequence:Lav' galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,342 [pN:main,p:76107,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.sequence:MemePsp' galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,342 [pN:main,p:76107,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.sequence:Fastg' galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,342 [pN:main,p:76107,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.sequence:csFasta' galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,342 [pN:main,p:76107,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.qualityscore:QualityScoreSOLiD' galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,342 [pN:main,p:76107,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.qualityscore:QualityScore454' galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,342 [pN:main,p:76107,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.molecules:SDF' galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,342 [pN:main,p:76107,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.molecules:PDB' galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,342 [pN:main,p:76107,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.molecules:Cell' galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,342 [pN:main,p:76107,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.molecules:CIF' galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,342 [pN:main,p:76107,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.molecules:ExtendedXYZ' galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,342 [pN:main,p:76107,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.molecules:XYZ' galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,342 [pN:main,p:76107,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.molecules:MOL2' galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,342 [pN:main,p:76107,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.molecules:InChI' galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,342 [pN:main,p:76107,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.molecules:FPS' galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,342 [pN:main,p:76107,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.molecules:PQR' galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,342 [pN:main,p:76107,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.molecules:GRO' galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,342 [pN:main,p:76107,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.phylip:Phylip' galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,342 [pN:main,p:76107,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.sequence:Fasta' galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,342 [pN:main,p:76107,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.sequence:FastqCSSanger' galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,343 [pN:main,p:76107,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.sequence:FastqSanger' galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,343 [pN:main,p:76107,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.sequence:Fastq' galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,343 [pN:main,p:76107,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.interval:Wiggle' galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,343 [pN:main,p:76107,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.text:Html' galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,343 [pN:main,p:76107,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.images:Pdf' galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,343 [pN:main,p:76107,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.sequence:Axt' galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,343 [pN:main,p:76107,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.sequence:Genbank' galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,343 [pN:main,p:76107,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.interval:Bed' galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,343 [pN:main,p:76107,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.interval:CustomTrack' galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,343 [pN:main,p:76107,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.interval:Gtf' galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,343 [pN:main,p:76107,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.interval:Gff' galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,343 [pN:main,p:76107,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.interval:Gff3' galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,343 [pN:main,p:76107,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.tabular:Pileup' galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,343 [pN:main,p:76107,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.tabular:Psl' galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,343 [pN:main,p:76107,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.text:Paf' galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,343 [pN:main,p:76107,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.interval:Interval' galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,343 [pN:main,p:76107,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.tabular:Sam' galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,343 [pN:main,p:76107,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.data:Newick' galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,343 [pN:main,p:76107,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.data:Nexus' galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,343 [pN:main,p:76107,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.text:IQTree' galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,344 [pN:main,p:76107,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.text:Obo' galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,344 [pN:main,p:76107,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.text:Arff' galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,344 [pN:main,p:76107,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.text:Ipynb' galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,344 [pN:main,p:76107,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.text:Biom1' galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,344 [pN:main,p:76107,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.text:ImgtJson' galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,344 [pN:main,p:76107,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.text:GeoJson' galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,344 [pN:main,p:76107,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.text:PithyaResult' galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,344 [pN:main,p:76107,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.text:BCSLts' galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,344 [pN:main,p:76107,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.text:Json' galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,344 [pN:main,p:76107,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.genetics:GenotypeMatrix' galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,344 [pN:main,p:76107,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.genetics:DataIn' galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,344 [pN:main,p:76107,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.genetics:MarkerMap' galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,344 [pN:main,p:76107,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.genetics:AllegroLOD' galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,344 [pN:main,p:76107,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.sequence:RNADotPlotMatrix' galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,344 [pN:main,p:76107,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.sequence:DotBracket' galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,344 [pN:main,p:76107,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.tabular:CMAP' galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,344 [pN:main,p:76107,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.tabular:ConnectivityTable' galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,344 [pN:main,p:76107,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.tabular:CSV' galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,344 [pN:main,p:76107,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.metacyto:mSummary' galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,344 [pN:main,p:76107,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.metacyto:mStats' galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,344 [pN:main,p:76107,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.tabular:TSV' galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,345 [pN:main,p:76107,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.tabular:MatrixMarket' galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,345 [pN:main,p:76107,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.msa:Hmmer2' galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,345 [pN:main,p:76107,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.msa:Hmmer3' galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,345 [pN:main,p:76107,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.msa:Stockholm_1_0' galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,345 [pN:main,p:76107,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.msa:MauveXmfa' galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,345 [pN:main,p:76107,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.msa:InfernalCM' galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,345 [pN:main,p:76107,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.annotation:SnapHmm' galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,345 [pN:main,p:76107,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.microarrays:Cel' galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,345 [pN:main,p:76107,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.microarrays:Gpr' galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,345 [pN:main,p:76107,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.microarrays:Gal' galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,345 [pN:main,p:76107,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.binary:RData' galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,345 [pN:main,p:76107,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.binary:RDS' galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,345 [pN:main,p:76107,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.images:Mrc2014' galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,345 [pN:main,p:76107,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.images:Jpg' galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,345 [pN:main,p:76107,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.images:Png' galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,345 [pN:main,p:76107,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.images:OMETiff' galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,345 [pN:main,p:76107,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.images:Tiff' galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,345 [pN:main,p:76107,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.images:Bmp' galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,345 [pN:main,p:76107,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.images:Gif' galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,345 [pN:main,p:76107,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.images:Im' galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,346 [pN:main,p:76107,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.images:Pcd' galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,346 [pN:main,p:76107,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.images:Pcx' galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,346 [pN:main,p:76107,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.images:Ppm' galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,346 [pN:main,p:76107,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.images:Psd' galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,346 [pN:main,p:76107,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.images:Xbm' galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,346 [pN:main,p:76107,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.images:Rgb' galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,346 [pN:main,p:76107,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.images:Pbm' galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,346 [pN:main,p:76107,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.images:Pgm' galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,346 [pN:main,p:76107,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.images:Xpm' galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,346 [pN:main,p:76107,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.images:Eps' galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,346 [pN:main,p:76107,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.images:Rast' galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,346 [pN:main,p:76107,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.images:Tck' galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,346 [pN:main,p:76107,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.images:Trk' galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,346 [pN:main,p:76107,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.images:Nifti1' galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,346 [pN:main,p:76107,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.images:Nifti2' galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,346 [pN:main,p:76107,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.images:Star' galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,346 [pN:main,p:76107,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.media:Wav' galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,346 [pN:main,p:76107,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.media:Mkv' galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,346 [pN:main,p:76107,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.media:Mp3' galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,347 [pN:main,p:76107,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.media:Mp4' galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,347 [pN:main,p:76107,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.media:Flv' galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,347 [pN:main,p:76107,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.media:Mpg' galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,347 [pN:main,p:76107,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.speech:TextGrid' galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,347 [pN:main,p:76107,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.speech:BPF' galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,347 [pN:main,p:76107,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.larch:FEFFInput' galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,347 [pN:main,p:76107,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.larch:AthenaProject' galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,347 [pN:main,p:76107,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.text:Castep' galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,347 [pN:main,p:76107,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.text:CTLresult' galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,347 [pN:main,p:76107,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.text:FormattedDensity' galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,347 [pN:main,p:76107,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.text:Param' galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,347 [pN:main,p:76107,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.text:Yaml' galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,347 [pN:main,p:76107,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.binary:OxliCountGraph' galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,347 [pN:main,p:76107,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.binary:OxliNodeGraph' galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,347 [pN:main,p:76107,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.binary:OxliTagSet' galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,347 [pN:main,p:76107,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.binary:OxliStopTags' galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,347 [pN:main,p:76107,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.binary:OxliSubset' galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,347 [pN:main,p:76107,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.binary:OxliGraphLabels' galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,348 [pN:main,p:76107,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.binary:FITS' galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,348 [pN:main,p:76107,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.neo4j:Neo4jDBzip' galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,348 [pN:main,p:76107,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.text:PithyaProperty' galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,348 [pN:main,p:76107,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.text:PithyaModel' galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,348 [pN:main,p:76107,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.text:BCSLmodel' galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,348 [pN:main,p:76107,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.text:StormSample' galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,348 [pN:main,p:76107,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.text:StormCheck' galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,351 [pN:main,p:76107,tN:MainThread] Build site file [tool-data/shared/ucsc/ucsc_build_sites.txt] not found using sample [tool-data/shared/ucsc/ucsc_build_sites.txt.sample]. galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,351 [pN:main,p:76107,tN:MainThread] Loaded build site 'ucsc': tool-data/shared/ucsc/ucsc_build_sites.txt.sample with display sites: ['main', 'test', 'archaea', 'ucla'] galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,351 [pN:main,p:76107,tN:MainThread] Loaded build site 'gbrowse': tool-data/shared/gbrowse/gbrowse_build_sites.txt with display sites: ['modencode', 'sgd_yeast', 'tair', 'wormbase', 'wormbase_ws120', 'wormbase_ws140', 'wormbase_ws170', 'wormbase_ws180', 'wormbase_ws190', 'wormbase_ws200', 'wormbase_ws204', 'wormbase_ws210', 'wormbase_ws220', 'wormbase_ws225'] galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,351 [pN:main,p:76107,tN:MainThread] Loaded build site 'ensembl': tool-data/shared/ensembl/ensembl_sites.txt galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,351 [pN:main,p:76107,tN:MainThread] Loaded build site 'ensembl_data_url': tool-data/shared/ensembl/ensembl_sites_data_URL.txt galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,351 [pN:main,p:76107,tN:MainThread] Build site file [tool-data/shared/igv/igv_build_sites.txt] not found using sample [tool-data/shared/igv/igv_build_sites.txt.sample]. galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,351 [pN:main,p:76107,tN:MainThread] Loaded build site 'igv': tool-data/shared/igv/igv_build_sites.txt.sample galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,351 [pN:main,p:76107,tN:MainThread] Build site file [tool-data/shared/rviewer/rviewer_build_sites.txt] not found using sample [tool-data/shared/rviewer/rviewer_build_sites.txt.sample]. galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,351 [pN:main,p:76107,tN:MainThread] Loaded build site 'rviewer': tool-data/shared/rviewer/rviewer_build_sites.txt.sample galaxy.util.tool_shed.tool_shed_registry DEBUG 2024-02-23 13:24:43,352 [pN:main,p:76107,tN:MainThread] Loading references to tool sheds from /tmp/tmpu7x63f_i/tool_sheds_conf.xml galaxy.util.tool_shed.tool_shed_registry DEBUG 2024-02-23 13:24:43,352 [pN:main,p:76107,tN:MainThread] Loaded reference to tool shed: Target Shed galaxy.queue_worker INFO 2024-02-23 13:24:43,352 [pN:main,p:76107,tN:MainThread] Initializing main Galaxy Queue Worker on sqlalchemy+sqlite:////tmp/tmpu7x63f_i/galaxy.sqlite?isolation_level=IMMEDIATE galaxy.tool_util.data WARNING 2024-02-23 13:24:43,359 [pN:main,p:76107,tN:MainThread] Cannot find index file '/scratch/rico/galaxytools/tools/ncbi_fcs_adaptor/test-data/ncbi_fcs_adaptor_config.tsv' for tool data table 'ncbi_fcs_adaptor_config' galaxy.tool_util.data DEBUG 2024-02-23 13:24:43,359 [pN:main,p:76107,tN:MainThread] Loaded tool data table 'ncbi_fcs_adaptor_config' from file '/scratch/rico/galaxytools/tools/ncbi_fcs_adaptor/tool_data_table_conf.xml.test' galaxy.tool_util.data WARNING 2024-02-23 13:24:43,359 [pN:main,p:76107,tN:MainThread] Cannot find index file '/scratch/rico/galaxytools/tools/ncbi_fcs_adaptor/test-data/ncbi_fcs_adaptor_databases.loc' for tool data table 'ncbi_fcs_adaptor_databases' galaxy.tool_util.data DEBUG 2024-02-23 13:24:43,359 [pN:main,p:76107,tN:MainThread] Loaded tool data table 'ncbi_fcs_adaptor_databases' from file '/scratch/rico/galaxytools/tools/ncbi_fcs_adaptor/tool_data_table_conf.xml.test' galaxy.tool_util.data WARNING 2024-02-23 13:24:43,359 [pN:main,p:76107,tN:MainThread] Cannot find index file '/scratch/rico/galaxytools/tools/ncbi_fcs_adaptor/test-data/ncbi_fcs_adaptor_divisions.tsv' for tool data table 'ncbi_fcs_adaptor_divisions' galaxy.tool_util.data DEBUG 2024-02-23 13:24:43,359 [pN:main,p:76107,tN:MainThread] Loaded tool data table 'ncbi_fcs_adaptor_divisions' from file '/scratch/rico/galaxytools/tools/ncbi_fcs_adaptor/tool_data_table_conf.xml.test' galaxy.visualization.genomes ERROR 2024-02-23 13:24:43,362 [pN:main,p:76107,tN:MainThread] Error reading twobit.loc Traceback (most recent call last): File "/scratch/rico/galaxy/lib/galaxy/visualization/genomes.py", line 220, in reload_genomes with open(twobit_path) as f: FileNotFoundError: [Errno 2] No such file or directory: '/scratch/rico/galaxy/tool-data/twobit.loc' galaxy.util WARNING 2024-02-23 13:24:43,502 [pN:main,p:76107,tN:MainThread] directory not found: /scratch/rico/galaxy/lib/galaxy/util/../../../config/plugins/activities galaxy.tools WARNING 2024-02-23 13:24:43,503 [pN:main,p:76107,tN:MainThread] The default shed tool config file (/tmp/tmpu7x63f_i/shed_tool_conf.xml) has been added to the tool_config_file option, if this is not the desired behavior, please set shed_tool_config_file to your primary shed-enabled tool config file galaxy.tool_util.toolbox.base INFO 2024-02-23 13:24:43,503 [pN:main,p:76107,tN:MainThread] Parsing the tool configuration /tmp/tmpu7x63f_i/tool_conf.xml galaxy.tool_util.toolbox.base DEBUG 2024-02-23 13:24:43,503 [pN:main,p:76107,tN:MainThread] Tool path for tool configuration /tmp/tmpu7x63f_i/tool_conf.xml is None galaxy.tool_util.toolbox.base DEBUG 2024-02-23 13:24:43,509 [pN:main,p:76107,tN:MainThread] Loaded tool id: upload1, version: 1.1.7 into tool panel.. galaxy.tool_util.toolbox.base DEBUG 2024-02-23 13:24:43,511 [pN:main,p:76107,tN:MainThread] Loaded tool id: ncbi_fcs_adaptor, version: 0.5.0+galaxy0 into tool panel.. galaxy.tools WARNING 2024-02-23 13:24:43,511 [pN:main,p:76107,tN:MainThread] The default shed tool config file (/tmp/tmpu7x63f_i/shed_tool_conf.xml) has been added to the tool_config_file option, if this is not the desired behavior, please set shed_tool_config_file to your primary shed-enabled tool config file galaxy.tool_util.toolbox.base INFO 2024-02-23 13:24:43,511 [pN:main,p:76107,tN:MainThread] Parsing the tool configuration /tmp/tmpu7x63f_i/shed_tools_conf.xml galaxy.tool_util.toolbox.base DEBUG 2024-02-23 13:24:43,511 [pN:main,p:76107,tN:MainThread] Tool path for shed tool configuration /tmp/tmpu7x63f_i/shed_tools_conf.xml is /tmp/tmpu7x63f_i/shed_tools galaxy.tools WARNING 2024-02-23 13:24:43,511 [pN:main,p:76107,tN:MainThread] The default shed tool config file (/tmp/tmpu7x63f_i/shed_tool_conf.xml) has been added to the tool_config_file option, if this is not the desired behavior, please set shed_tool_config_file to your primary shed-enabled tool config file galaxy.tool_util.toolbox.base INFO 2024-02-23 13:24:43,511 [pN:main,p:76107,tN:MainThread] Parsing the tool configuration /tmp/tmpu7x63f_i/empty_tool_conf.xml galaxy.tool_util.toolbox.base DEBUG 2024-02-23 13:24:43,511 [pN:main,p:76107,tN:MainThread] Tool path for tool configuration /tmp/tmpu7x63f_i/empty_tool_conf.xml is None galaxy.tool_util.toolbox.base DEBUG 2024-02-23 13:24:43,511 [pN:main,p:76107,tN:MainThread] Reading tools from config files finished (8.676 ms) galaxy.tool_util.toolbox.base DEBUG 2024-02-23 13:24:43,512 [pN:main,p:76107,tN:MainThread] Loaded tool id: upload1, version: 1.1.7 into tool panel.. galaxy.tool_util.toolbox.views.edam DEBUG 2024-02-23 13:24:43,512 [pN:main,p:76107,tN:MainThread] Loading EDAM tool panel finished (0.926 ms) galaxy.tool_util.toolbox.base DEBUG 2024-02-23 13:24:43,513 [pN:main,p:76107,tN:MainThread] Loaded tool id: upload1, version: 1.1.7 into tool panel.. galaxy.tool_util.toolbox.views.edam DEBUG 2024-02-23 13:24:43,513 [pN:main,p:76107,tN:MainThread] Loading EDAM tool panel finished (0.804 ms) galaxy.tool_util.toolbox.integrated_panel DEBUG 2024-02-23 13:24:43,513 [pN:main,p:76107,tN:MainThread] Writing integrated tool panel config file to '/tmp/tmpu7x63f_i/integrated_tool_panel_conf.xml' galaxy.util ERROR 2024-02-23 13:24:43,973 [pN:main,p:76107,tN:MainThread] Error parsing file /tmp/tmpu7x63f_i Traceback (most recent call last): File "/scratch/rico/galaxy/lib/galaxy/util/__init__.py", line 305, in parse_xml tree = etree.parse(str(fname), parser=parser) File "src/lxml/etree.pyx", line 3541, in lxml.etree.parse File "src/lxml/parser.pxi", line 1879, in lxml.etree._parseDocument File "src/lxml/parser.pxi", line 1905, in lxml.etree._parseDocumentFromURL File "src/lxml/parser.pxi", line 1808, in lxml.etree._parseDocFromFile File "src/lxml/parser.pxi", line 1180, in lxml.etree._BaseParser._parseDocFromFile File "src/lxml/parser.pxi", line 618, in lxml.etree._ParserContext._handleParseResultDoc File "src/lxml/parser.pxi", line 728, in lxml.etree._handleParseResult File "src/lxml/parser.pxi", line 657, in lxml.etree._raiseParseError File "/tmp/tmpu7x63f_i", line 1 lxml.etree.XMLSyntaxError: Document is empty, line 1, column 1 galaxy.tools.data_manager.manager ERROR 2024-02-23 13:24:43,974 [pN:main,p:76107,tN:MainThread] There was an error parsing your Data Manager config file "/tmp/tmpu7x63f_i": Document is empty, line 1, column 1 (tmpu7x63f_i, line 1) galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,975 [pN:main,p:76107,tN:MainThread] Loaded display application 'ucsc_bam' for datatype 'bam', inherit=False. galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,975 [pN:main,p:76107,tN:MainThread] Loaded display application 'ensembl_bam' for datatype 'bam', inherit=False. galaxy.datatypes.display_applications.application ERROR 2024-02-23 13:24:43,976 [pN:main,p:76107,tN:MainThread] Error loading a set of Dynamic Display Application links: Unable to find data table named "igv_broad_genomes". galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,977 [pN:main,p:76107,tN:MainThread] Loaded display application 'igv_bam' for datatype 'bam', inherit=False. galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,977 [pN:main,p:76107,tN:MainThread] Loaded display application 'igb_bam' for datatype 'bam', inherit=False. galaxy.datatypes.display_applications.application ERROR 2024-02-23 13:24:43,977 [pN:main,p:76107,tN:MainThread] Error loading a set of Dynamic Display Application links: Unable to find data table named "bam_iobio". galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,977 [pN:main,p:76107,tN:MainThread] Loaded display application 'iobio_bam' for datatype 'bam', inherit=False. galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,978 [pN:main,p:76107,tN:MainThread] Loaded display application 'igb_bed' for datatype 'bed', inherit=False. galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,978 [pN:main,p:76107,tN:MainThread] Loaded display application 'igb_bedgraph' for datatype 'bedgraph', inherit=False. galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,978 [pN:main,p:76107,tN:MainThread] Loaded display application 'ucsc_bigbed' for datatype 'bigbed', inherit=False. galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,979 [pN:main,p:76107,tN:MainThread] Loaded display application 'igb_bb' for datatype 'bigbed', inherit=False. galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,979 [pN:main,p:76107,tN:MainThread] Loaded display application 'ucsc_bigwig' for datatype 'bigwig', inherit=False. galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,979 [pN:main,p:76107,tN:MainThread] Loaded display application 'igb_bigwig' for datatype 'bigwig', inherit=False. galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,980 [pN:main,p:76107,tN:MainThread] Loaded display application 'igv_bigwig' for datatype 'bigwig', inherit=False. galaxy.datatypes.display_applications.application ERROR 2024-02-23 13:24:43,980 [pN:main,p:76107,tN:MainThread] Error loading a set of Dynamic Display Application links: Unable to find data table named "intermine_simple_display". galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,980 [pN:main,p:76107,tN:MainThread] Loaded display application 'intermine_simple' for datatype 'intermine_tabular', inherit=False. galaxy.datatypes.display_applications.application ERROR 2024-02-23 13:24:43,980 [pN:main,p:76107,tN:MainThread] Error loading a set of Dynamic Display Application links: Unable to find data table named "igv_broad_genomes". galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,980 [pN:main,p:76107,tN:MainThread] Loaded display application 'igv_fasta' for datatype 'fasta', inherit=True. galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,981 [pN:main,p:76107,tN:MainThread] Loaded display application 'ensembl_gff' for datatype 'gff', inherit=True. galaxy.datatypes.display_applications.application ERROR 2024-02-23 13:24:43,982 [pN:main,p:76107,tN:MainThread] Error loading a set of Dynamic Display Application links: Unable to find data table named "igv_broad_genomes". galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,982 [pN:main,p:76107,tN:MainThread] Loaded display application 'igv_gff' for datatype 'gff', inherit=True. galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,982 [pN:main,p:76107,tN:MainThread] Loaded display application 'igb_gtf' for datatype 'gtf', inherit=False. galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,983 [pN:main,p:76107,tN:MainThread] Loaded display application 'ensembl_interval' for datatype 'interval', inherit=True. galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,984 [pN:main,p:76107,tN:MainThread] Loaded display application 'gbrowse_interval_as_bed' for datatype 'interval', inherit=True. galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,984 [pN:main,p:76107,tN:MainThread] Loaded display application 'rviewer_interval' for datatype 'interval', inherit=True. galaxy.datatypes.display_applications.application ERROR 2024-02-23 13:24:43,984 [pN:main,p:76107,tN:MainThread] Error loading a set of Dynamic Display Application links: Unable to find data table named "igv_broad_genomes". galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,984 [pN:main,p:76107,tN:MainThread] Loaded display application 'igv_interval_as_bed' for datatype 'interval', inherit=True. galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,984 [pN:main,p:76107,tN:MainThread] Loaded display application 'avivator' for datatype 'ome.tiff', inherit=False. galaxy.datatypes.display_applications.application ERROR 2024-02-23 13:24:43,985 [pN:main,p:76107,tN:MainThread] Error loading a set of Dynamic Display Application links: Unable to find data table named "q2view_display". galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,985 [pN:main,p:76107,tN:MainThread] Loaded display application 'q2view' for datatype 'qza', inherit=False. galaxy.datatypes.display_applications.application ERROR 2024-02-23 13:24:43,985 [pN:main,p:76107,tN:MainThread] Error loading a set of Dynamic Display Application links: Unable to find data table named "q2view_display". galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,985 [pN:main,p:76107,tN:MainThread] Loaded display application 'q2view' for datatype 'qzv', inherit=False. galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,985 [pN:main,p:76107,tN:MainThread] Loaded display application 'ucsc_maf_customtrack' for datatype 'mafcustomtrack', inherit=False. galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,985 [pN:main,p:76107,tN:MainThread] Loaded display application 'minerva_tabular' for datatype 'tabular', inherit=False. galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,986 [pN:main,p:76107,tN:MainThread] Loaded display application 'ucsc_vcf' for datatype 'vcf', inherit=False. galaxy.datatypes.display_applications.application ERROR 2024-02-23 13:24:43,986 [pN:main,p:76107,tN:MainThread] Error loading a set of Dynamic Display Application links: Unable to find data table named "igv_broad_genomes". galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,986 [pN:main,p:76107,tN:MainThread] Loaded display application 'igv_vcf' for datatype 'vcf', inherit=False. galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,987 [pN:main,p:76107,tN:MainThread] Loaded display application 'rviewer_vcf' for datatype 'vcf', inherit=True. galaxy.datatypes.display_applications.application ERROR 2024-02-23 13:24:43,987 [pN:main,p:76107,tN:MainThread] Error loading a set of Dynamic Display Application links: Unable to find data table named "vcf_iobio". galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,987 [pN:main,p:76107,tN:MainThread] Loaded display application 'iobio_vcf' for datatype 'vcf', inherit=False. galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,987 [pN:main,p:76107,tN:MainThread] Loaded display application 'igb_wig' for datatype 'wig', inherit=False. galaxy.datatypes.display_applications.application ERROR 2024-02-23 13:24:43,988 [pN:main,p:76107,tN:MainThread] Error loading a set of Dynamic Display Application links: Unable to find data table named "igv_broad_genomes". galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,988 [pN:main,p:76107,tN:MainThread] Loaded display application 'igv_vcf' for datatype 'vcf_bgzip', inherit=False. galaxy.datatypes.display_applications.application ERROR 2024-02-23 13:24:43,988 [pN:main,p:76107,tN:MainThread] Error loading a set of Dynamic Display Application links: Unable to find data table named "igv_broad_genomes". galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,988 [pN:main,p:76107,tN:MainThread] Loaded display application 'igv_genbank' for datatype 'genbank', inherit=False. galaxy.datatypes.display_applications.application ERROR 2024-02-23 13:24:43,988 [pN:main,p:76107,tN:MainThread] Error loading a set of Dynamic Display Application links: Unable to find data table named "biom_simple_display". galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,988 [pN:main,p:76107,tN:MainThread] Loaded display application 'biom_simple' for datatype 'biom1', inherit=False. galaxy.datatypes.display_applications.application ERROR 2024-02-23 13:24:43,988 [pN:main,p:76107,tN:MainThread] Error loading a set of Dynamic Display Application links: Unable to find data table named "icn3d_simple_display". galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,988 [pN:main,p:76107,tN:MainThread] Loaded display application 'icn3d_simple' for datatype 'sdf', inherit=False. galaxy.datatypes.display_applications.application ERROR 2024-02-23 13:24:43,989 [pN:main,p:76107,tN:MainThread] Error loading a set of Dynamic Display Application links: Unable to find data table named "icn3d_simple_display". galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,989 [pN:main,p:76107,tN:MainThread] Loaded display application 'icn3d_simple' for datatype 'mol2', inherit=False. galaxy.datatypes.display_applications.application ERROR 2024-02-23 13:24:43,989 [pN:main,p:76107,tN:MainThread] Error loading a set of Dynamic Display Application links: Unable to find data table named "icn3d_simple_display". galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,989 [pN:main,p:76107,tN:MainThread] Loaded display application 'icn3d_simple' for datatype 'pdb', inherit=False. galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,989 [pN:main,p:76107,tN:MainThread] Loaded display application 'ucsc_trackhub' for datatype 'trackhub', inherit=False. galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,989 [pN:main,p:76107,tN:MainThread] Adding inherited display application 'ensembl_interval' to datatype 'bed' galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,989 [pN:main,p:76107,tN:MainThread] Adding inherited display application 'gbrowse_interval_as_bed' to datatype 'bed' galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,989 [pN:main,p:76107,tN:MainThread] Adding inherited display application 'rviewer_interval' to datatype 'bed' galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,989 [pN:main,p:76107,tN:MainThread] Adding inherited display application 'igv_interval_as_bed' to datatype 'bed' galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,989 [pN:main,p:76107,tN:MainThread] Adding inherited display application 'ensembl_interval' to datatype 'bedgraph' galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,989 [pN:main,p:76107,tN:MainThread] Adding inherited display application 'gbrowse_interval_as_bed' to datatype 'bedgraph' galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,989 [pN:main,p:76107,tN:MainThread] Adding inherited display application 'rviewer_interval' to datatype 'bedgraph' galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,989 [pN:main,p:76107,tN:MainThread] Adding inherited display application 'igv_interval_as_bed' to datatype 'bedgraph' galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,989 [pN:main,p:76107,tN:MainThread] Adding inherited display application 'ensembl_interval' to datatype 'bedstrict' galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,989 [pN:main,p:76107,tN:MainThread] Adding inherited display application 'gbrowse_interval_as_bed' to datatype 'bedstrict' galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,989 [pN:main,p:76107,tN:MainThread] Adding inherited display application 'rviewer_interval' to datatype 'bedstrict' galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,989 [pN:main,p:76107,tN:MainThread] Adding inherited display application 'igv_interval_as_bed' to datatype 'bedstrict' galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,989 [pN:main,p:76107,tN:MainThread] Adding inherited display application 'ensembl_interval' to datatype 'bed6' galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,989 [pN:main,p:76107,tN:MainThread] Adding inherited display application 'gbrowse_interval_as_bed' to datatype 'bed6' galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,989 [pN:main,p:76107,tN:MainThread] Adding inherited display application 'rviewer_interval' to datatype 'bed6' galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,989 [pN:main,p:76107,tN:MainThread] Adding inherited display application 'igv_interval_as_bed' to datatype 'bed6' galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,990 [pN:main,p:76107,tN:MainThread] Adding inherited display application 'ensembl_interval' to datatype 'bed12' galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,990 [pN:main,p:76107,tN:MainThread] Adding inherited display application 'gbrowse_interval_as_bed' to datatype 'bed12' galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,990 [pN:main,p:76107,tN:MainThread] Adding inherited display application 'rviewer_interval' to datatype 'bed12' galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,990 [pN:main,p:76107,tN:MainThread] Adding inherited display application 'igv_interval_as_bed' to datatype 'bed12' galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,990 [pN:main,p:76107,tN:MainThread] Adding inherited display application 'ensembl_interval' to datatype 'probed' galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,990 [pN:main,p:76107,tN:MainThread] Adding inherited display application 'gbrowse_interval_as_bed' to datatype 'probed' galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,990 [pN:main,p:76107,tN:MainThread] Adding inherited display application 'rviewer_interval' to datatype 'probed' galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,990 [pN:main,p:76107,tN:MainThread] Adding inherited display application 'igv_interval_as_bed' to datatype 'probed' galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,990 [pN:main,p:76107,tN:MainThread] Adding inherited display application 'ensembl_interval' to datatype 'chrint' galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,990 [pN:main,p:76107,tN:MainThread] Adding inherited display application 'gbrowse_interval_as_bed' to datatype 'chrint' galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,990 [pN:main,p:76107,tN:MainThread] Adding inherited display application 'rviewer_interval' to datatype 'chrint' galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,990 [pN:main,p:76107,tN:MainThread] Adding inherited display application 'igv_interval_as_bed' to datatype 'chrint' galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,990 [pN:main,p:76107,tN:MainThread] Adding inherited display application 'igv_fasta' to datatype 'fasta.gz' galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,990 [pN:main,p:76107,tN:MainThread] Adding inherited display application 'ensembl_gff' to datatype 'gff3' galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,990 [pN:main,p:76107,tN:MainThread] Adding inherited display application 'igv_gff' to datatype 'gff3' galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,990 [pN:main,p:76107,tN:MainThread] Adding inherited display application 'ensembl_gff' to datatype 'gff3.gz' galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,990 [pN:main,p:76107,tN:MainThread] Adding inherited display application 'igv_gff' to datatype 'gff3.gz' galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,990 [pN:main,p:76107,tN:MainThread] Adding inherited display application 'ensembl_gff' to datatype 'gff3.bz2' galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,990 [pN:main,p:76107,tN:MainThread] Adding inherited display application 'igv_gff' to datatype 'gff3.bz2' galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,990 [pN:main,p:76107,tN:MainThread] Adding inherited display application 'ensembl_gff' to datatype 'gtf' galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,990 [pN:main,p:76107,tN:MainThread] Adding inherited display application 'igv_gff' to datatype 'gtf' galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,991 [pN:main,p:76107,tN:MainThread] Adding inherited display application 'ensembl_interval' to datatype 'encodepeak' galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,991 [pN:main,p:76107,tN:MainThread] Adding inherited display application 'gbrowse_interval_as_bed' to datatype 'encodepeak' galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,991 [pN:main,p:76107,tN:MainThread] Adding inherited display application 'rviewer_interval' to datatype 'encodepeak' galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,991 [pN:main,p:76107,tN:MainThread] Adding inherited display application 'igv_interval_as_bed' to datatype 'encodepeak' galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,991 [pN:main,p:76107,tN:MainThread] Adding inherited display application 'igv_fasta' to datatype 'sequences' galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,991 [pN:main,p:76107,tN:MainThread] Adding inherited display application 'ensembl_interval' to datatype 'interval_tabix.gz' galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,991 [pN:main,p:76107,tN:MainThread] Adding inherited display application 'gbrowse_interval_as_bed' to datatype 'interval_tabix.gz' galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,991 [pN:main,p:76107,tN:MainThread] Adding inherited display application 'rviewer_interval' to datatype 'interval_tabix.gz' galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,991 [pN:main,p:76107,tN:MainThread] Adding inherited display application 'igv_interval_as_bed' to datatype 'interval_tabix.gz' galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,992 [pN:main,p:76107,tN:MainThread] Adding inherited display application 'ensembl_interval' to datatype 'juicer_medium_tabix.gz' galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,992 [pN:main,p:76107,tN:MainThread] Adding inherited display application 'gbrowse_interval_as_bed' to datatype 'juicer_medium_tabix.gz' galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,992 [pN:main,p:76107,tN:MainThread] Adding inherited display application 'rviewer_interval' to datatype 'juicer_medium_tabix.gz' galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,992 [pN:main,p:76107,tN:MainThread] Adding inherited display application 'igv_interval_as_bed' to datatype 'juicer_medium_tabix.gz' galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,992 [pN:main,p:76107,tN:MainThread] Adding inherited display application 'ensembl_interval' to datatype 'bed_tabix.gz' galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,992 [pN:main,p:76107,tN:MainThread] Adding inherited display application 'gbrowse_interval_as_bed' to datatype 'bed_tabix.gz' galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,992 [pN:main,p:76107,tN:MainThread] Adding inherited display application 'rviewer_interval' to datatype 'bed_tabix.gz' galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,992 [pN:main,p:76107,tN:MainThread] Adding inherited display application 'igv_interval_as_bed' to datatype 'bed_tabix.gz' galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,992 [pN:main,p:76107,tN:MainThread] Adding inherited display application 'ensembl_interval' to datatype 'gff_tabix.gz' galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,992 [pN:main,p:76107,tN:MainThread] Adding inherited display application 'gbrowse_interval_as_bed' to datatype 'gff_tabix.gz' galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,992 [pN:main,p:76107,tN:MainThread] Adding inherited display application 'rviewer_interval' to datatype 'gff_tabix.gz' galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,992 [pN:main,p:76107,tN:MainThread] Adding inherited display application 'igv_interval_as_bed' to datatype 'gff_tabix.gz' galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,993 [pN:main,p:76107,tN:MainThread] Adding inherited display application 'igv_fasta' to datatype 'mothur.align' galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,995 [pN:main,p:76107,tN:MainThread] Loaded converter: CONVERTER_uncompressed_to_gz galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,995 [pN:main,p:76107,tN:MainThread] Loaded converter: CONVERTER_gz_to_uncompressed galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,997 [pN:main,p:76107,tN:MainThread] Loaded converter: CONVERTER_uncompressed_to_gz galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,997 [pN:main,p:76107,tN:MainThread] Loaded converter: CONVERTER_gz_to_uncompressed galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,999 [pN:main,p:76107,tN:MainThread] Loaded converter: CONVERTER_uncompressed_to_gz galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,999 [pN:main,p:76107,tN:MainThread] Loaded converter: CONVERTER_gz_to_uncompressed galaxy.datatypes.registry DEBUG 2024-02-23 13:24:44,000 [pN:main,p:76107,tN:MainThread] Loaded converter: CONVERTER_Bam_Bai_0 galaxy.datatypes.registry DEBUG 2024-02-23 13:24:44,001 [pN:main,p:76107,tN:MainThread] Loaded converter: CONVERTER_bam_to_bigwig_0 galaxy.datatypes.registry DEBUG 2024-02-23 13:24:44,002 [pN:main,p:76107,tN:MainThread] Loaded converter: CONVERTER_bam_to_qname_sorted_bam galaxy.datatypes.registry DEBUG 2024-02-23 13:24:44,003 [pN:main,p:76107,tN:MainThread] Loaded converter: CONVERTER_bam_to_bigwig_0 galaxy.datatypes.registry DEBUG 2024-02-23 13:24:44,003 [pN:main,p:76107,tN:MainThread] Loaded converter: CONVERTER_bam_to_coodinate_sorted_bam galaxy.datatypes.registry DEBUG 2024-02-23 13:24:44,004 [pN:main,p:76107,tN:MainThread] Loaded converter: CONVERTER_bam_to_qname_sorted_bam galaxy.datatypes.registry DEBUG 2024-02-23 13:24:44,005 [pN:main,p:76107,tN:MainThread] Loaded converter: CONVERTER_cram_to_bam_0 galaxy.datatypes.registry DEBUG 2024-02-23 13:24:44,006 [pN:main,p:76107,tN:MainThread] Loaded converter: CONVERTER_bed_to_gff_0 galaxy.datatypes.registry DEBUG 2024-02-23 13:24:44,007 [pN:main,p:76107,tN:MainThread] Loaded converter: CONVERTER_interval_to_bgzip_0 galaxy.datatypes.registry DEBUG 2024-02-23 13:24:44,009 [pN:main,p:76107,tN:MainThread] Loaded converter: CONVERTER_interval_to_tabix_0 galaxy.datatypes.registry DEBUG 2024-02-23 13:24:44,010 [pN:main,p:76107,tN:MainThread] Loaded converter: CONVERTER_bed_gff_or_vcf_to_bigwig_0 galaxy.datatypes.registry DEBUG 2024-02-23 13:24:44,010 [pN:main,p:76107,tN:MainThread] Loaded converter: CONVERTER_bed_to_fli_0 galaxy.datatypes.registry DEBUG 2024-02-23 13:24:44,011 [pN:main,p:76107,tN:MainThread] Loaded converter: CONVERTER_bedgraph_to_bigwig galaxy.datatypes.registry DEBUG 2024-02-23 13:24:44,012 [pN:main,p:76107,tN:MainThread] Loaded converter: CONVERTER_len_to_linecount galaxy.datatypes.registry DEBUG 2024-02-23 13:24:44,012 [pN:main,p:76107,tN:MainThread] Loaded converter: CONVERTER_parquet_to_csv galaxy.datatypes.registry DEBUG 2024-02-23 13:24:44,014 [pN:main,p:76107,tN:MainThread] Loaded converter: bigwigtowig galaxy.datatypes.registry DEBUG 2024-02-23 13:24:44,016 [pN:main,p:76107,tN:MainThread] Loaded converter: CONVERTER_interval_to_bgzip_0 galaxy.datatypes.registry DEBUG 2024-02-23 13:24:44,017 [pN:main,p:76107,tN:MainThread] Loaded converter: CONVERTER_interval_to_tabix_0 galaxy.datatypes.registry DEBUG 2024-02-23 13:24:44,018 [pN:main,p:76107,tN:MainThread] Loaded converter: CONVERTER_bed_gff_or_vcf_to_bigwig_0 galaxy.datatypes.registry DEBUG 2024-02-23 13:24:44,019 [pN:main,p:76107,tN:MainThread] Loaded converter: csv_to_tabular galaxy.datatypes.registry DEBUG 2024-02-23 13:24:44,019 [pN:main,p:76107,tN:MainThread] Loaded converter: tabular_to_csv galaxy.datatypes.registry DEBUG 2024-02-23 13:24:44,020 [pN:main,p:76107,tN:MainThread] Loaded converter: CONVERTER_fasta_to_tabular galaxy.datatypes.registry DEBUG 2024-02-23 13:24:44,021 [pN:main,p:76107,tN:MainThread] Loaded converter: CONVERTER_fasta_to_bowtie_base_index galaxy.datatypes.registry DEBUG 2024-02-23 13:24:44,021 [pN:main,p:76107,tN:MainThread] Loaded converter: CONVERTER_fasta_to_bowtie_color_index galaxy.datatypes.registry DEBUG 2024-02-23 13:24:44,022 [pN:main,p:76107,tN:MainThread] Loaded converter: CONVERTER_fasta_to_2bit galaxy.datatypes.registry DEBUG 2024-02-23 13:24:44,023 [pN:main,p:76107,tN:MainThread] Loaded converter: CONVERTER_fasta_to_len galaxy.datatypes.registry DEBUG 2024-02-23 13:24:44,024 [pN:main,p:76107,tN:MainThread] Loaded converter: CONVERTER_fasta_to_fai galaxy.datatypes.registry DEBUG 2024-02-23 13:24:44,025 [pN:main,p:76107,tN:MainThread] Loaded converter: CONVERTER_uncompressed_to_gz galaxy.datatypes.registry DEBUG 2024-02-23 13:24:44,025 [pN:main,p:76107,tN:MainThread] Loaded converter: CONVERTER_gz_to_uncompressed galaxy.datatypes.registry DEBUG 2024-02-23 13:24:44,026 [pN:main,p:76107,tN:MainThread] Loaded converter: CONVERTER_fastq_to_fqtoc0 galaxy.datatypes.registry DEBUG 2024-02-23 13:24:44,027 [pN:main,p:76107,tN:MainThread] Loaded converter: CONVERTER_uncompressed_to_gz galaxy.datatypes.registry DEBUG 2024-02-23 13:24:44,028 [pN:main,p:76107,tN:MainThread] Loaded converter: CONVERTER_gz_to_uncompressed galaxy.datatypes.registry DEBUG 2024-02-23 13:24:44,029 [pN:main,p:76107,tN:MainThread] Loaded converter: CONVERTER_bz2_to_uncompressed galaxy.datatypes.registry DEBUG 2024-02-23 13:24:44,029 [pN:main,p:76107,tN:MainThread] Loaded converter: CONVERTER_fastq_to_fqtoc0 galaxy.datatypes.registry DEBUG 2024-02-23 13:24:44,030 [pN:main,p:76107,tN:MainThread] Loaded converter: CONVERTER_uncompressed_to_gz galaxy.datatypes.registry DEBUG 2024-02-23 13:24:44,031 [pN:main,p:76107,tN:MainThread] Loaded converter: CONVERTER_gz_to_uncompressed galaxy.datatypes.registry DEBUG 2024-02-23 13:24:44,032 [pN:main,p:76107,tN:MainThread] Loaded converter: CONVERTER_bz2_to_uncompressed galaxy.datatypes.registry DEBUG 2024-02-23 13:24:44,033 [pN:main,p:76107,tN:MainThread] Loaded converter: CONVERTER_fastq_to_fqtoc0 galaxy.datatypes.registry DEBUG 2024-02-23 13:24:44,034 [pN:main,p:76107,tN:MainThread] Loaded converter: CONVERTER_uncompressed_to_gz galaxy.datatypes.registry DEBUG 2024-02-23 13:24:44,034 [pN:main,p:76107,tN:MainThread] Loaded converter: CONVERTER_gz_to_uncompressed galaxy.datatypes.registry DEBUG 2024-02-23 13:24:44,035 [pN:main,p:76107,tN:MainThread] Loaded converter: CONVERTER_bz2_to_uncompressed galaxy.datatypes.registry DEBUG 2024-02-23 13:24:44,036 [pN:main,p:76107,tN:MainThread] Loaded converter: CONVERTER_fastq_to_fqtoc0 galaxy.datatypes.registry DEBUG 2024-02-23 13:24:44,037 [pN:main,p:76107,tN:MainThread] Loaded converter: CONVERTER_uncompressed_to_gz galaxy.datatypes.registry DEBUG 2024-02-23 13:24:44,038 [pN:main,p:76107,tN:MainThread] Loaded converter: CONVERTER_gz_to_uncompressed galaxy.datatypes.registry DEBUG 2024-02-23 13:24:44,039 [pN:main,p:76107,tN:MainThread] Loaded converter: CONVERTER_bz2_to_uncompressed galaxy.datatypes.registry DEBUG 2024-02-23 13:24:44,040 [pN:main,p:76107,tN:MainThread] Loaded converter: CONVERTER_fastq_to_fqtoc0 galaxy.datatypes.registry DEBUG 2024-02-23 13:24:44,041 [pN:main,p:76107,tN:MainThread] Loaded converter: CONVERTER_uncompressed_to_gz galaxy.datatypes.registry DEBUG 2024-02-23 13:24:44,042 [pN:main,p:76107,tN:MainThread] Loaded converter: CONVERTER_gz_to_uncompressed galaxy.datatypes.registry DEBUG 2024-02-23 13:24:44,042 [pN:main,p:76107,tN:MainThread] Loaded converter: CONVERTER_bz2_to_uncompressed galaxy.datatypes.registry DEBUG 2024-02-23 13:24:44,043 [pN:main,p:76107,tN:MainThread] Loaded converter: CONVERTER_gff_to_bed_0 galaxy.datatypes.registry DEBUG 2024-02-23 13:24:44,044 [pN:main,p:76107,tN:MainThread] Loaded converter: CONVERTER_gff_to_interval_index_0 galaxy.datatypes.registry DEBUG 2024-02-23 13:24:44,044 [pN:main,p:76107,tN:MainThread] Loaded converter: CONVERTER_bed_gff_or_vcf_to_bigwig_0 galaxy.datatypes.registry DEBUG 2024-02-23 13:24:44,045 [pN:main,p:76107,tN:MainThread] Loaded converter: CONVERTER_gff_to_fli_0 galaxy.datatypes.registry DEBUG 2024-02-23 13:24:44,047 [pN:main,p:76107,tN:MainThread] Loaded converter: CONVERTER_interval_to_bgzip_0 galaxy.datatypes.registry DEBUG 2024-02-23 13:24:44,048 [pN:main,p:76107,tN:MainThread] Loaded converter: CONVERTER_interval_to_tabix_0 galaxy.datatypes.registry DEBUG 2024-02-23 13:24:44,049 [pN:main,p:76107,tN:MainThread] Loaded converter: CONVERTER_uncompressed_to_gz galaxy.datatypes.registry DEBUG 2024-02-23 13:24:44,050 [pN:main,p:76107,tN:MainThread] Loaded converter: CONVERTER_gz_to_uncompressed galaxy.datatypes.registry DEBUG 2024-02-23 13:24:44,051 [pN:main,p:76107,tN:MainThread] Loaded converter: CONVERTER_bz2_to_uncompressed galaxy.datatypes.registry DEBUG 2024-02-23 13:24:44,051 [pN:main,p:76107,tN:MainThread] Loaded converter: CONVERTER_gff_to_interval_index_0 galaxy.datatypes.registry DEBUG 2024-02-23 13:24:44,052 [pN:main,p:76107,tN:MainThread] Loaded converter: CONVERTER_bed_gff_or_vcf_to_bigwig_0 galaxy.datatypes.registry DEBUG 2024-02-23 13:24:44,053 [pN:main,p:76107,tN:MainThread] Loaded converter: CONVERTER_interval_to_bed_0 galaxy.datatypes.registry DEBUG 2024-02-23 13:24:44,053 [pN:main,p:76107,tN:MainThread] Loaded converter: CONVERTER_interval_to_bedstrict_0 galaxy.datatypes.registry DEBUG 2024-02-23 13:24:44,054 [pN:main,p:76107,tN:MainThread] Loaded converter: CONVERTER_interval_to_bed6_0 galaxy.datatypes.registry DEBUG 2024-02-23 13:24:44,055 [pN:main,p:76107,tN:MainThread] Loaded converter: CONVERTER_interval_to_bed12_0 galaxy.datatypes.registry DEBUG 2024-02-23 13:24:44,056 [pN:main,p:76107,tN:MainThread] Loaded converter: CONVERTER_interval_to_bgzip_0 galaxy.datatypes.registry DEBUG 2024-02-23 13:24:44,058 [pN:main,p:76107,tN:MainThread] Loaded converter: CONVERTER_interval_to_tabix_0 galaxy.datatypes.registry DEBUG 2024-02-23 13:24:44,058 [pN:main,p:76107,tN:MainThread] Loaded converter: CONVERTER_interval_to_bigwig_0 galaxy.datatypes.registry DEBUG 2024-02-23 13:24:44,059 [pN:main,p:76107,tN:MainThread] Loaded converter: CONVERTER_picard_interval_list_to_bed6 galaxy.datatypes.registry DEBUG 2024-02-23 13:24:44,060 [pN:main,p:76107,tN:MainThread] Loaded converter: CONVERTER_tar_to_directory galaxy.datatypes.registry DEBUG 2024-02-23 13:24:44,061 [pN:main,p:76107,tN:MainThread] Loaded converter: CONVERTER_uncompressed_to_gz galaxy.datatypes.registry DEBUG 2024-02-23 13:24:44,062 [pN:main,p:76107,tN:MainThread] Loaded converter: CONVERTER_gz_to_uncompressed galaxy.datatypes.registry DEBUG 2024-02-23 13:24:44,063 [pN:main,p:76107,tN:MainThread] Loaded converter: CONVERTER_uncompressed_to_gz galaxy.datatypes.registry DEBUG 2024-02-23 13:24:44,063 [pN:main,p:76107,tN:MainThread] Loaded converter: CONVERTER_gz_to_uncompressed galaxy.datatypes.registry DEBUG 2024-02-23 13:24:44,064 [pN:main,p:76107,tN:MainThread] Loaded converter: CONVERTER_uncompressed_to_gz galaxy.datatypes.registry DEBUG 2024-02-23 13:24:44,065 [pN:main,p:76107,tN:MainThread] Loaded converter: CONVERTER_gz_to_uncompressed galaxy.datatypes.registry DEBUG 2024-02-23 13:24:44,066 [pN:main,p:76107,tN:MainThread] Loaded converter: CONVERTER_maf_to_fasta_0 galaxy.datatypes.registry DEBUG 2024-02-23 13:24:44,066 [pN:main,p:76107,tN:MainThread] Loaded converter: CONVERTER_maf_to_interval_0 galaxy.datatypes.registry DEBUG 2024-02-23 13:24:44,068 [pN:main,p:76107,tN:MainThread] Loaded converter: CONVERTER_interval_to_tabix_0 galaxy.datatypes.registry DEBUG 2024-02-23 13:24:44,069 [pN:main,p:76107,tN:MainThread] Loaded converter: CONVERTER_interval_to_bgzip_0 galaxy.datatypes.registry DEBUG 2024-02-23 13:24:44,070 [pN:main,p:76107,tN:MainThread] Loaded converter: CONVERTER_bed_gff_or_vcf_to_bigwig_0 galaxy.datatypes.registry DEBUG 2024-02-23 13:24:44,072 [pN:main,p:76107,tN:MainThread] Loaded converter: CONVERTER_interval_to_bgzip_0 galaxy.datatypes.registry DEBUG 2024-02-23 13:24:44,073 [pN:main,p:76107,tN:MainThread] Loaded converter: CONVERTER_interval_to_tabix_0 galaxy.datatypes.registry DEBUG 2024-02-23 13:24:44,074 [pN:main,p:76107,tN:MainThread] Loaded converter: CONVERTER_sam_to_unsorted_bam galaxy.datatypes.registry DEBUG 2024-02-23 13:24:44,075 [pN:main,p:76107,tN:MainThread] Loaded converter: CONVERTER_bam_to_coodinate_sorted_bam galaxy.datatypes.registry DEBUG 2024-02-23 13:24:44,075 [pN:main,p:76107,tN:MainThread] Loaded converter: CONVERTER_bam_to_qname_sorted_bam galaxy.datatypes.registry DEBUG 2024-02-23 13:24:44,076 [pN:main,p:76107,tN:MainThread] Loaded converter: CONVERTER_sam_to_bigwig_0 galaxy.datatypes.registry DEBUG 2024-02-23 13:24:44,077 [pN:main,p:76107,tN:MainThread] Loaded converter: tabular_to_dbnsfp galaxy.datatypes.registry DEBUG 2024-02-23 13:24:44,077 [pN:main,p:76107,tN:MainThread] Loaded converter: tabular_to_csv galaxy.datatypes.registry DEBUG 2024-02-23 13:24:44,078 [pN:main,p:76107,tN:MainThread] Loaded converter: CONVERTER_uncompressed_to_gz galaxy.datatypes.registry DEBUG 2024-02-23 13:24:44,079 [pN:main,p:76107,tN:MainThread] Loaded converter: CONVERTER_gz_to_uncompressed galaxy.datatypes.registry DEBUG 2024-02-23 13:24:44,081 [pN:main,p:76107,tN:MainThread] Loaded converter: CONVERTER_interval_to_bgzip_0 galaxy.datatypes.registry DEBUG 2024-02-23 13:24:44,081 [pN:main,p:76107,tN:MainThread] Loaded converter: CONVERTER_vcf_to_vcf_bgzip_0 galaxy.datatypes.registry DEBUG 2024-02-23 13:24:44,083 [pN:main,p:76107,tN:MainThread] Loaded converter: CONVERTER_interval_to_tabix_0 galaxy.datatypes.registry DEBUG 2024-02-23 13:24:44,083 [pN:main,p:76107,tN:MainThread] Loaded converter: CONVERTER_bed_gff_or_vcf_to_bigwig_0 galaxy.datatypes.registry DEBUG 2024-02-23 13:24:44,084 [pN:main,p:76107,tN:MainThread] Loaded converter: CONVERTER_uncompressed_to_gz galaxy.datatypes.registry DEBUG 2024-02-23 13:24:44,085 [pN:main,p:76107,tN:MainThread] Loaded converter: CONVERTER_bcf_uncompressed_to_bcf galaxy.datatypes.registry DEBUG 2024-02-23 13:24:44,086 [pN:main,p:76107,tN:MainThread] Loaded converter: CONVERTER_bcf_uncompressed_to_bcf galaxy.datatypes.registry DEBUG 2024-02-23 13:24:44,087 [pN:main,p:76107,tN:MainThread] Loaded converter: CONVERTER_wig_to_bigwig galaxy.datatypes.registry DEBUG 2024-02-23 13:24:44,087 [pN:main,p:76107,tN:MainThread] Loaded converter: CONVERTER_wiggle_to_interval_0 galaxy.datatypes.registry DEBUG 2024-02-23 13:24:44,088 [pN:main,p:76107,tN:MainThread] Loaded converter: CONVERTER_vcf_bgzip_to_tabix_0 galaxy.datatypes.registry DEBUG 2024-02-23 13:24:44,089 [pN:main,p:76107,tN:MainThread] Loaded converter: CONVERTER_gz_to_uncompressed galaxy.datatypes.registry DEBUG 2024-02-23 13:24:44,089 [pN:main,p:76107,tN:MainThread] Loaded converter: lped2fpedconvert galaxy.datatypes.registry DEBUG 2024-02-23 13:24:44,090 [pN:main,p:76107,tN:MainThread] Loaded converter: lped2pbedconvert galaxy.datatypes.registry DEBUG 2024-02-23 13:24:44,091 [pN:main,p:76107,tN:MainThread] Loaded converter: pbed2lpedconvert galaxy.datatypes.registry DEBUG 2024-02-23 13:24:44,091 [pN:main,p:76107,tN:MainThread] Loaded converter: pbed2ldindepconvert galaxy.datatypes.registry DEBUG 2024-02-23 13:24:44,092 [pN:main,p:76107,tN:MainThread] Loaded converter: CONVERTER_uncompressed_to_gz galaxy.datatypes.registry DEBUG 2024-02-23 13:24:44,093 [pN:main,p:76107,tN:MainThread] Loaded converter: CONVERTER_gz_to_uncompressed galaxy.datatypes.registry DEBUG 2024-02-23 13:24:44,094 [pN:main,p:76107,tN:MainThread] Loaded converter: CONVERTER_biom galaxy.datatypes.registry DEBUG 2024-02-23 13:24:44,095 [pN:main,p:76107,tN:MainThread] Loaded converter: CONVERTER_biom galaxy.datatypes.registry DEBUG 2024-02-23 13:24:44,098 [pN:main,p:76107,tN:MainThread] Loaded converter: CONVERTER_molecules galaxy.datatypes.registry DEBUG 2024-02-23 13:24:44,102 [pN:main,p:76107,tN:MainThread] Loaded converter: CONVERTER_molecules galaxy.datatypes.registry DEBUG 2024-02-23 13:24:44,105 [pN:main,p:76107,tN:MainThread] Loaded converter: CONVERTER_molecules galaxy.datatypes.registry DEBUG 2024-02-23 13:24:44,105 [pN:main,p:76107,tN:MainThread] Loaded converter: CONVERTER_SMILES_to_MOL galaxy.datatypes.registry DEBUG 2024-02-23 13:24:44,109 [pN:main,p:76107,tN:MainThread] Loaded converter: CONVERTER_molecules galaxy.datatypes.registry DEBUG 2024-02-23 13:24:44,110 [pN:main,p:76107,tN:MainThread] Loaded converter: CONVERTER_smiles_to_smiles galaxy.datatypes.registry DEBUG 2024-02-23 13:24:44,113 [pN:main,p:76107,tN:MainThread] Loaded converter: CONVERTER_molecules galaxy.datatypes.registry DEBUG 2024-02-23 13:24:44,116 [pN:main,p:76107,tN:MainThread] Loaded converter: CONVERTER_molecules galaxy.datatypes.registry DEBUG 2024-02-23 13:24:44,119 [pN:main,p:76107,tN:MainThread] Loaded converter: CONVERTER_molecules galaxy.datatypes.registry DEBUG 2024-02-23 13:24:44,122 [pN:main,p:76107,tN:MainThread] Loaded converter: CONVERTER_molecules galaxy.datatypes.registry DEBUG 2024-02-23 13:24:44,125 [pN:main,p:76107,tN:MainThread] Loaded converter: CONVERTER_molecules galaxy.datatypes.registry DEBUG 2024-02-23 13:24:44,128 [pN:main,p:76107,tN:MainThread] Loaded converter: CONVERTER_molecules galaxy.datatypes.registry DEBUG 2024-02-23 13:24:44,129 [pN:main,p:76107,tN:MainThread] Loaded converter: CONVERTER_inchi_to_mol galaxy.datatypes.registry DEBUG 2024-02-23 13:24:44,132 [pN:main,p:76107,tN:MainThread] Loaded converter: CONVERTER_molecules galaxy.datatypes.registry DEBUG 2024-02-23 13:24:44,136 [pN:main,p:76107,tN:MainThread] Loaded converter: CONVERTER_molecules galaxy.datatypes.registry DEBUG 2024-02-23 13:24:44,139 [pN:main,p:76107,tN:MainThread] Loaded converter: CONVERTER_molecules galaxy.datatypes.registry DEBUG 2024-02-23 13:24:44,142 [pN:main,p:76107,tN:MainThread] Loaded converter: CONVERTER_molecules galaxy.datatypes.registry DEBUG 2024-02-23 13:24:44,145 [pN:main,p:76107,tN:MainThread] Loaded converter: CONVERTER_molecules galaxy.datatypes.registry DEBUG 2024-02-23 13:24:44,148 [pN:main,p:76107,tN:MainThread] Loaded converter: CONVERTER_molecules galaxy.datatypes.registry DEBUG 2024-02-23 13:24:44,151 [pN:main,p:76107,tN:MainThread] Loaded converter: CONVERTER_molecules galaxy.datatypes.registry DEBUG 2024-02-23 13:24:44,155 [pN:main,p:76107,tN:MainThread] Loaded converter: CONVERTER_molecules galaxy.datatypes.registry DEBUG 2024-02-23 13:24:44,158 [pN:main,p:76107,tN:MainThread] Loaded converter: CONVERTER_molecules galaxy.datatypes.registry DEBUG 2024-02-23 13:24:44,161 [pN:main,p:76107,tN:MainThread] Loaded converter: CONVERTER_molecules galaxy.datatypes.registry DEBUG 2024-02-23 13:24:44,162 [pN:main,p:76107,tN:MainThread] Loaded converter: CONVERTER_mol2_to_mol galaxy.datatypes.registry DEBUG 2024-02-23 13:24:44,165 [pN:main,p:76107,tN:MainThread] Loaded converter: CONVERTER_molecules galaxy.datatypes.registry DEBUG 2024-02-23 13:24:44,166 [pN:main,p:76107,tN:MainThread] Loaded converter: CONVERTER_cml_to_smiles galaxy.datatypes.registry DEBUG 2024-02-23 13:24:44,169 [pN:main,p:76107,tN:MainThread] Loaded converter: CONVERTER_molecules galaxy.datatypes.registry DEBUG 2024-02-23 13:24:44,172 [pN:main,p:76107,tN:MainThread] Loaded converter: CONVERTER_molecules galaxy.datatypes.registry DEBUG 2024-02-23 13:24:44,175 [pN:main,p:76107,tN:MainThread] Loaded converter: CONVERTER_molecules galaxy.datatypes.registry DEBUG 2024-02-23 13:24:44,176 [pN:main,p:76107,tN:MainThread] Loaded converter: CONVERTER_Pdb_to_Gro_0 galaxy.datatypes.registry DEBUG 2024-02-23 13:24:44,177 [pN:main,p:76107,tN:MainThread] Loaded converter: CONVERTER_mdconvert galaxy.datatypes.registry DEBUG 2024-02-23 13:24:44,178 [pN:main,p:76107,tN:MainThread] Loaded converter: CONVERTER_mdconvert galaxy.datatypes.registry DEBUG 2024-02-23 13:24:44,180 [pN:main,p:76107,tN:MainThread] Loaded converter: CONVERTER_mdconvert galaxy.datatypes.registry DEBUG 2024-02-23 13:24:44,181 [pN:main,p:76107,tN:MainThread] Loaded converter: CONVERTER_mdconvert galaxy.datatypes.registry DEBUG 2024-02-23 13:24:44,182 [pN:main,p:76107,tN:MainThread] Loaded converter: CONVERTER_mdconvert galaxy.datatypes.registry DEBUG 2024-02-23 13:24:44,183 [pN:main,p:76107,tN:MainThread] Loaded converter: CONVERTER_mdconvert galaxy.datatypes.registry DEBUG 2024-02-23 13:24:44,184 [pN:main,p:76107,tN:MainThread] Loaded converter: CONVERTER_Gro_to_Pdb_0 galaxy.datatypes.registry DEBUG 2024-02-23 13:24:44,185 [pN:main,p:76107,tN:MainThread] Loaded converter: CONVERTER_ref_to_seq_taxomony galaxy.datatypes.registry DEBUG 2024-02-23 13:24:44,185 [pN:main,p:76107,tN:MainThread] Loaded converter: CONVERTER_neostorezip_to_neostore galaxy.datatypes.registry DEBUG 2024-02-23 13:24:44,186 [pN:main,p:76107,tN:MainThread] Loaded external metadata tool: __SET_METADATA__ galaxy.tools.special_tools DEBUG 2024-02-23 13:24:44,187 [pN:main,p:76107,tN:MainThread] Loaded history export tool: __EXPORT_HISTORY__ galaxy.tools.special_tools DEBUG 2024-02-23 13:24:44,188 [pN:main,p:76107,tN:MainThread] Loaded history export to uri tool: __EXPORT_HISTORY_TO_URI__ galaxy.tools.special_tools DEBUG 2024-02-23 13:24:44,188 [pN:main,p:76107,tN:MainThread] Loaded history import tool: __IMPORT_HISTORY__ galaxy.tools.special_tools DEBUG 2024-02-23 13:24:44,189 [pN:main,p:76107,tN:MainThread] Loaded data fetch tool: __DATA_FETCH__ galaxy.visualization.plugins.registry INFO 2024-02-23 13:24:44,190 [pN:main,p:76107,tN:MainThread] VisualizationsRegistry, loaded plugin: PCA_3Dplot galaxy.visualization.plugins.registry INFO 2024-02-23 13:24:44,190 [pN:main,p:76107,tN:MainThread] VisualizationsRegistry, loaded plugin: aequatus galaxy.visualization.plugins.registry INFO 2024-02-23 13:24:44,190 [pN:main,p:76107,tN:MainThread] VisualizationsRegistry, loaded plugin: annotate_image galaxy.visualization.plugins.config_parser INFO 2024-02-23 13:24:44,191 [pN:main,p:76107,tN:MainThread] template syntax is deprecated: use entry_point instead galaxy.visualization.plugins.registry INFO 2024-02-23 13:24:44,191 [pN:main,p:76107,tN:MainThread] VisualizationsRegistry, loaded plugin: chiraviz galaxy.visualization.plugins.config_parser INFO 2024-02-23 13:24:44,192 [pN:main,p:76107,tN:MainThread] Visualizations plugin disabled: Circster. Skipping... galaxy.visualization.plugins.config_parser INFO 2024-02-23 13:24:44,192 [pN:main,p:76107,tN:MainThread] template syntax is deprecated: use entry_point instead galaxy.visualization.plugins.registry INFO 2024-02-23 13:24:44,192 [pN:main,p:76107,tN:MainThread] VisualizationsRegistry, loaded plugin: csg galaxy.visualization.plugins.registry INFO 2024-02-23 13:24:44,193 [pN:main,p:76107,tN:MainThread] VisualizationsRegistry, loaded plugin: cytoscape galaxy.visualization.plugins.registry INFO 2024-02-23 13:24:44,193 [pN:main,p:76107,tN:MainThread] VisualizationsRegistry, loaded plugin: drawrna galaxy.visualization.plugins.registry INFO 2024-02-23 13:24:44,194 [pN:main,p:76107,tN:MainThread] VisualizationsRegistry, loaded plugin: editor galaxy.visualization.plugins.registry INFO 2024-02-23 13:24:44,195 [pN:main,p:76107,tN:MainThread] VisualizationsRegistry, loaded plugin: example galaxy.visualization.plugins.config_parser INFO 2024-02-23 13:24:44,195 [pN:main,p:76107,tN:MainThread] template syntax is deprecated: use entry_point instead galaxy.visualization.plugins.registry INFO 2024-02-23 13:24:44,196 [pN:main,p:76107,tN:MainThread] VisualizationsRegistry, loaded plugin: fits_image_viewer galaxy.visualization.plugins.config_parser INFO 2024-02-23 13:24:44,196 [pN:main,p:76107,tN:MainThread] template syntax is deprecated: use entry_point instead galaxy.visualization.plugins.registry INFO 2024-02-23 13:24:44,196 [pN:main,p:76107,tN:MainThread] VisualizationsRegistry, loaded plugin: graphviz galaxy.visualization.plugins.registry INFO 2024-02-23 13:24:44,197 [pN:main,p:76107,tN:MainThread] VisualizationsRegistry, loaded plugin: h5web galaxy.visualization.plugins.registry INFO 2024-02-23 13:24:44,198 [pN:main,p:76107,tN:MainThread] VisualizationsRegistry, loaded plugin: heatmap_cluster galaxy.visualization.plugins.registry INFO 2024-02-23 13:24:44,200 [pN:main,p:76107,tN:MainThread] VisualizationsRegistry, loaded plugin: heatmap_default galaxy.visualization.plugins.config_parser INFO 2024-02-23 13:24:44,200 [pN:main,p:76107,tN:MainThread] template syntax is deprecated: use entry_point instead galaxy.visualization.plugins.registry INFO 2024-02-23 13:24:44,200 [pN:main,p:76107,tN:MainThread] VisualizationsRegistry, loaded plugin: hivtrace galaxy.visualization.plugins.config_parser INFO 2024-02-23 13:24:44,200 [pN:main,p:76107,tN:MainThread] template syntax is deprecated: use entry_point instead galaxy.visualization.plugins.registry INFO 2024-02-23 13:24:44,200 [pN:main,p:76107,tN:MainThread] VisualizationsRegistry, loaded plugin: hyphyvision galaxy.visualization.plugins.registry INFO 2024-02-23 13:24:44,202 [pN:main,p:76107,tN:MainThread] VisualizationsRegistry, loaded plugin: jqplot_bar galaxy.visualization.plugins.registry INFO 2024-02-23 13:24:44,203 [pN:main,p:76107,tN:MainThread] VisualizationsRegistry, loaded plugin: jqplot_box galaxy.visualization.plugins.registry INFO 2024-02-23 13:24:44,204 [pN:main,p:76107,tN:MainThread] VisualizationsRegistry, loaded plugin: jqplot_histogram galaxy.visualization.plugins.registry INFO 2024-02-23 13:24:44,205 [pN:main,p:76107,tN:MainThread] VisualizationsRegistry, loaded plugin: jqplot_line galaxy.visualization.plugins.registry INFO 2024-02-23 13:24:44,207 [pN:main,p:76107,tN:MainThread] VisualizationsRegistry, loaded plugin: jqplot_scatter galaxy.visualization.plugins.config_parser INFO 2024-02-23 13:24:44,207 [pN:main,p:76107,tN:MainThread] template syntax is deprecated: use entry_point instead galaxy.visualization.plugins.registry INFO 2024-02-23 13:24:44,207 [pN:main,p:76107,tN:MainThread] VisualizationsRegistry, loaded plugin: audio_player galaxy.visualization.plugins.config_parser INFO 2024-02-23 13:24:44,207 [pN:main,p:76107,tN:MainThread] template syntax is deprecated: use entry_point instead galaxy.visualization.plugins.registry INFO 2024-02-23 13:24:44,208 [pN:main,p:76107,tN:MainThread] VisualizationsRegistry, loaded plugin: video_player galaxy.visualization.plugins.registry INFO 2024-02-23 13:24:44,208 [pN:main,p:76107,tN:MainThread] VisualizationsRegistry, loaded plugin: msa galaxy.visualization.plugins.config_parser INFO 2024-02-23 13:24:44,209 [pN:main,p:76107,tN:MainThread] template syntax is deprecated: use entry_point instead galaxy.visualization.plugins.registry INFO 2024-02-23 13:24:44,209 [pN:main,p:76107,tN:MainThread] VisualizationsRegistry, loaded plugin: mvpapp galaxy.visualization.plugins.registry INFO 2024-02-23 13:24:44,209 [pN:main,p:76107,tN:MainThread] VisualizationsRegistry, loaded plugin: ngl galaxy.visualization.plugins.registry INFO 2024-02-23 13:24:44,210 [pN:main,p:76107,tN:MainThread] VisualizationsRegistry, loaded plugin: nora galaxy.visualization.plugins.registry INFO 2024-02-23 13:24:44,212 [pN:main,p:76107,tN:MainThread] VisualizationsRegistry, loaded plugin: nvd3_bar galaxy.visualization.plugins.registry INFO 2024-02-23 13:24:44,213 [pN:main,p:76107,tN:MainThread] VisualizationsRegistry, loaded plugin: nvd3_bar_stacked galaxy.visualization.plugins.registry INFO 2024-02-23 13:24:44,214 [pN:main,p:76107,tN:MainThread] VisualizationsRegistry, loaded plugin: nvd3_histogram galaxy.visualization.plugins.registry INFO 2024-02-23 13:24:44,215 [pN:main,p:76107,tN:MainThread] VisualizationsRegistry, loaded plugin: nvd3_histogram_discrete galaxy.visualization.plugins.registry INFO 2024-02-23 13:24:44,217 [pN:main,p:76107,tN:MainThread] VisualizationsRegistry, loaded plugin: nvd3_horizontal galaxy.visualization.plugins.registry INFO 2024-02-23 13:24:44,218 [pN:main,p:76107,tN:MainThread] VisualizationsRegistry, loaded plugin: nvd3_horizontal_stacked galaxy.visualization.plugins.registry INFO 2024-02-23 13:24:44,219 [pN:main,p:76107,tN:MainThread] VisualizationsRegistry, loaded plugin: nvd3_line galaxy.visualization.plugins.registry INFO 2024-02-23 13:24:44,221 [pN:main,p:76107,tN:MainThread] VisualizationsRegistry, loaded plugin: nvd3_line_focus galaxy.visualization.plugins.registry INFO 2024-02-23 13:24:44,223 [pN:main,p:76107,tN:MainThread] VisualizationsRegistry, loaded plugin: nvd3_pie galaxy.visualization.plugins.registry INFO 2024-02-23 13:24:44,226 [pN:main,p:76107,tN:MainThread] VisualizationsRegistry, loaded plugin: nvd3_scatter galaxy.visualization.plugins.registry INFO 2024-02-23 13:24:44,231 [pN:main,p:76107,tN:MainThread] VisualizationsRegistry, loaded plugin: nvd3_stackedarea galaxy.visualization.plugins.registry INFO 2024-02-23 13:24:44,234 [pN:main,p:76107,tN:MainThread] VisualizationsRegistry, loaded plugin: nvd3_stackedarea_full galaxy.visualization.plugins.registry INFO 2024-02-23 13:24:44,235 [pN:main,p:76107,tN:MainThread] VisualizationsRegistry, loaded plugin: nvd3_stackedarea_stream galaxy.visualization.plugins.registry INFO 2024-02-23 13:24:44,236 [pN:main,p:76107,tN:MainThread] VisualizationsRegistry, loaded plugin: openlayers galaxy.visualization.plugins.registry INFO 2024-02-23 13:24:44,237 [pN:main,p:76107,tN:MainThread] VisualizationsRegistry, loaded plugin: openseadragon galaxy.visualization.plugins.registry INFO 2024-02-23 13:24:44,237 [pN:main,p:76107,tN:MainThread] VisualizationsRegistry, loaded plugin: phylocanvas galaxy.visualization.plugins.registry INFO 2024-02-23 13:24:44,240 [pN:main,p:76107,tN:MainThread] VisualizationsRegistry, loaded plugin: phyloviz galaxy.visualization.plugins.registry INFO 2024-02-23 13:24:44,240 [pN:main,p:76107,tN:MainThread] VisualizationsRegistry, loaded plugin: pv galaxy.visualization.plugins.registry INFO 2024-02-23 13:24:44,241 [pN:main,p:76107,tN:MainThread] VisualizationsRegistry, loaded plugin: scatterplot galaxy.visualization.plugins.config_parser INFO 2024-02-23 13:24:44,241 [pN:main,p:76107,tN:MainThread] Visualizations plugin disabled: Sweepster. Skipping... galaxy.visualization.plugins.registry INFO 2024-02-23 13:24:44,241 [pN:main,p:76107,tN:MainThread] VisualizationsRegistry, loaded plugin: trackster galaxy.visualization.plugins.registry INFO 2024-02-23 13:24:44,242 [pN:main,p:76107,tN:MainThread] VisualizationsRegistry, loaded plugin: ts_visjs galaxy.visualization.plugins.config_parser INFO 2024-02-23 13:24:44,242 [pN:main,p:76107,tN:MainThread] template syntax is deprecated: use entry_point instead galaxy.visualization.plugins.registry INFO 2024-02-23 13:24:44,242 [pN:main,p:76107,tN:MainThread] VisualizationsRegistry, loaded plugin: unipept galaxy.visualization.plugins.registry INFO 2024-02-23 13:24:44,242 [pN:main,p:76107,tN:MainThread] VisualizationsRegistry, loaded plugin: venn galaxy.tours._impl INFO 2024-02-23 13:24:44,258 [pN:main,p:76107,tN:MainThread] Loaded tour 'core.galaxy_ui' galaxy.tours._impl INFO 2024-02-23 13:24:44,269 [pN:main,p:76107,tN:MainThread] Loaded tour 'core.deferred' galaxy.tours._impl INFO 2024-02-23 13:24:44,277 [pN:main,p:76107,tN:MainThread] Loaded tour 'core.history' galaxy.tours._impl INFO 2024-02-23 13:24:44,284 [pN:main,p:76107,tN:MainThread] Loaded tour 'core.windows' galaxy.workflow.scheduling_manager INFO 2024-02-23 13:24:44,287 [pN:main,p:76107,tN:MainThread] No workflow schedulers plugin config file defined, using default scheduler. galaxy.web_stack.handlers INFO 2024-02-23 13:24:44,287 [pN:main,p:76107,tN:MainThread] WorkflowSchedulingManager: No job handler assignment method is set, defaulting to 'HANDLER_ASSIGNMENT_METHODS.DB_SKIP_LOCKED', set the `assign_with` attribute on <handlers> to override the default galaxy.workflow.scheduling_manager DEBUG 2024-02-23 13:24:44,288 [pN:main,p:76107,tN:MainThread] Starting workflow schedulers galaxy.app INFO 2024-02-23 13:24:44,289 [pN:main,p:76107,tN:MainThread] Galaxy app startup finished (2168.414 ms) galaxy.web.framework.base DEBUG 2024-02-23 13:24:44,306 [pN:main,p:76107,tN:MainThread] Enabling 'user' controller, class: User galaxy.web.framework.base DEBUG 2024-02-23 13:24:44,306 [pN:main,p:76107,tN:MainThread] Enabling 'data_manager' controller, class: DataManager galaxy.web.framework.base DEBUG 2024-02-23 13:24:44,306 [pN:main,p:76107,tN:MainThread] Enabling 'async' controller, class: ASync galaxy.web.framework.base DEBUG 2024-02-23 13:24:44,307 [pN:main,p:76107,tN:MainThread] Enabling 'tag' controller, class: TagsController galaxy.web.framework.base DEBUG 2024-02-23 13:24:44,310 [pN:main,p:76107,tN:MainThread] Enabling 'page' controller, class: PageController galaxy.web.framework.base DEBUG 2024-02-23 13:24:44,310 [pN:main,p:76107,tN:MainThread] Enabling 'root' controller, class: RootController galaxy.web.framework.base DEBUG 2024-02-23 13:24:44,310 [pN:main,p:76107,tN:MainThread] Enabling 'tool_runner' controller, class: ToolRunner galaxy.web.framework.base DEBUG 2024-02-23 13:24:44,311 [pN:main,p:76107,tN:MainThread] Enabling 'error' controller, class: Error galaxy.web.framework.base DEBUG 2024-02-23 13:24:44,311 [pN:main,p:76107,tN:MainThread] Enabling 'forms' controller, class: Forms galaxy.web.framework.base DEBUG 2024-02-23 13:24:44,320 [pN:main,p:76107,tN:MainThread] Enabling 'admin_toolshed' controller, class: AdminGalaxy galaxy.web.framework.base DEBUG 2024-02-23 13:24:44,320 [pN:main,p:76107,tN:MainThread] Enabling 'admin_toolshed' controller, class: AdminToolshed galaxy.web.framework.base DEBUG 2024-02-23 13:24:44,321 [pN:main,p:76107,tN:MainThread] Enabling 'visualization' controller, class: VisualizationController galaxy.web.framework.base DEBUG 2024-02-23 13:24:44,321 [pN:main,p:76107,tN:MainThread] Enabling 'shed_tool_static' controller, class: ShedToolStatic galaxy.web.framework.base DEBUG 2024-02-23 13:24:44,322 [pN:main,p:76107,tN:MainThread] Enabling 'authnz' controller, class: JSAppLauncher galaxy.web.framework.base DEBUG 2024-02-23 13:24:44,322 [pN:main,p:76107,tN:MainThread] Enabling 'authnz' controller, class: OIDC galaxy.web.framework.base DEBUG 2024-02-23 13:24:44,323 [pN:main,p:76107,tN:MainThread] Enabling 'workflow' controller, class: WorkflowController galaxy.web.framework.base DEBUG 2024-02-23 13:24:44,324 [pN:main,p:76107,tN:MainThread] Enabling 'history' controller, class: HistoryController galaxy.web.framework.base DEBUG 2024-02-23 13:24:44,342 [pN:main,p:76107,tN:MainThread] Enabling 'dataset' controller, class: DatasetInterface galaxy.web.framework.base DEBUG 2024-02-23 13:24:44,342 [pN:main,p:76107,tN:MainThread] Enabling 'admin' controller, class: AdminGalaxy galaxy.web.framework.base DEBUG 2024-02-23 13:24:44,776 [pN:main,p:76107,tN:MainThread] Enabling 'library_datasets' API controller, class: LibraryDatasetsController galaxy.web.framework.base DEBUG 2024-02-23 13:24:44,872 [pN:main,p:76107,tN:MainThread] Enabling 'jobs' API controller, class: JobController galaxy.web.framework.base DEBUG 2024-02-23 13:24:44,946 [pN:main,p:76107,tN:MainThread] Enabling 'job_files' API controller, class: JobFilesAPIController galaxy.web.framework.base DEBUG 2024-02-23 13:24:44,976 [pN:main,p:76107,tN:MainThread] Enabling 'toolshed' API controller, class: ToolShedController galaxy.web.framework.base DEBUG 2024-02-23 13:24:44,986 [pN:main,p:76107,tN:MainThread] Enabling 'tools' API controller, class: ToolsController galaxy.web.framework.base DEBUG 2024-02-23 13:24:45,062 [pN:main,p:76107,tN:MainThread] Enabling 'trs_consumer' API controller, class: TrsConsumeAPIController galaxy.web.framework.base DEBUG 2024-02-23 13:24:45,063 [pN:main,p:76107,tN:MainThread] Enabling 'history_dataset_extended_metadata' API controller, class: HistoryDatasetExtendMetadataController galaxy.web.framework.base DEBUG 2024-02-23 13:24:45,063 [pN:main,p:76107,tN:MainThread] Enabling 'library_dataset_extended_metadata' API controller, class: LibraryDatasetExtendMetadataController galaxy.web.framework.base DEBUG 2024-02-23 13:24:45,063 [pN:main,p:76107,tN:MainThread] Enabling 'container_resolution' API controller, class: ContainerResolutionAPIController galaxy.web.framework.base DEBUG 2024-02-23 13:24:45,064 [pN:main,p:76107,tN:MainThread] Enabling 'job_ports' API controller, class: JobPortsAPIController galaxy.web.framework.base DEBUG 2024-02-23 13:24:45,064 [pN:main,p:76107,tN:MainThread] Enabling 'tool_dependencies' API controller, class: ToolDependenciesAPIController galaxy.web.framework.base DEBUG 2024-02-23 13:24:45,152 [pN:main,p:76107,tN:MainThread] Enabling 'history_content_provenance' API controller, class: HDAProvenanceController galaxy.web.framework.base DEBUG 2024-02-23 13:24:45,152 [pN:main,p:76107,tN:MainThread] Enabling 'ldda_provenance' API controller, class: LDDAProvenanceController galaxy.web.framework.base DEBUG 2024-02-23 13:24:45,152 [pN:main,p:76107,tN:MainThread] Enabling 'tool_entry_points' API controller, class: ToolEntryPointsAPIController galaxy.web.framework.base DEBUG 2024-02-23 13:24:45,236 [pN:main,p:76107,tN:MainThread] Enabling 'authenticate' API controller, class: AuthenticationController galaxy.web.framework.base DEBUG 2024-02-23 13:24:45,497 [pN:main,p:76107,tN:MainThread] Enabling 'trs_search' API controller, class: TrsSearchAPIController galaxy.web.framework.base DEBUG 2024-02-23 13:24:45,530 [pN:main,p:76107,tN:MainThread] Enabling 'tool_shed_repositories' API controller, class: ToolShedRepositoriesController galaxy.web.framework.base DEBUG 2024-02-23 13:24:45,646 [pN:main,p:76107,tN:MainThread] Enabling 'forms' API controller, class: FormDefinitionAPIController galaxy.web.framework.base DEBUG 2024-02-23 13:24:45,819 [pN:main,p:76107,tN:MainThread] Enabling 'workflows' API controller, class: WorkflowsAPIController galaxy.web.framework.base DEBUG 2024-02-23 13:24:45,819 [pN:main,p:76107,tN:MainThread] Enabling 'uploads' API controller, class: UploadsAPIController galaxy.web.framework.base DEBUG 2024-02-23 13:24:46,315 [pN:main,p:76107,tN:MainThread] Enabling 'history_annotations' API controller, class: HistoryAnnotationsController galaxy.web.framework.base DEBUG 2024-02-23 13:24:46,315 [pN:main,p:76107,tN:MainThread] Enabling 'history_content_annotations' API controller, class: HistoryContentAnnotationsController galaxy.web.framework.base DEBUG 2024-02-23 13:24:46,315 [pN:main,p:76107,tN:MainThread] Enabling 'workflow_annotations' API controller, class: WorkflowAnnotationsController galaxy.web.framework.base DEBUG 2024-02-23 13:24:46,360 [pN:main,p:76107,tN:MainThread] Enabling 'visualizations' API controller, class: VisualizationsController galaxy.web.framework.base DEBUG 2024-02-23 13:24:46,361 [pN:main,p:76107,tN:MainThread] Enabling 'sanitize_allow' API controller, class: SanitizeAllowController galaxy.web.framework.base DEBUG 2024-02-23 13:24:46,361 [pN:main,p:76107,tN:MainThread] Enabling 'page_revisions' API controller, class: PageRevisionsController galaxy.web.framework.base DEBUG 2024-02-23 13:24:46,432 [pN:main,p:76107,tN:MainThread] Enabling 'library_contents' API controller, class: LibraryContentsController galaxy.web.framework.base DEBUG 2024-02-23 13:24:46,551 [pN:main,p:76107,tN:MainThread] Enabling 'users' API controller, class: UserAPIController galaxy.web.framework.base DEBUG 2024-02-23 13:24:46,552 [pN:main,p:76107,tN:MainThread] Enabling 'cloudauthz' API controller, class: CloudAuthzController galaxy.web.framework.base DEBUG 2024-02-23 13:24:46,552 [pN:main,p:76107,tN:MainThread] Enabling 'webhooks' API controller, class: WebhooksController galaxy.web.framework.base DEBUG 2024-02-23 13:24:46,626 [pN:main,p:76107,tN:MainThread] Enabling 'plugins' API controller, class: PluginsController galaxy.web.framework.base DEBUG 2024-02-23 13:24:46,662 [pN:main,p:76107,tN:MainThread] Enabling 'dynamic_tools' API controller, class: DynamicToolsController galaxy.webapps.util DEBUG 2024-02-23 13:24:46,945 [pN:main,p:76107,tN:MainThread] Enabling 'paste.httpexceptions' middleware galaxy.webapps.util DEBUG 2024-02-23 13:24:46,946 [pN:main,p:76107,tN:MainThread] Enabling 'RemoteUser' middleware galaxy.webapps.util DEBUG 2024-02-23 13:24:46,946 [pN:main,p:76107,tN:MainThread] Enabling 'ErrorMiddleware' middleware galaxy.webapps.util DEBUG 2024-02-23 13:24:46,946 [pN:main,p:76107,tN:MainThread] Enabling 'TusMiddleware' middleware galaxy.webapps.util DEBUG 2024-02-23 13:24:46,946 [pN:main,p:76107,tN:MainThread] Enabling 'XForwardedHostMiddleware' middleware galaxy.webapps.util DEBUG 2024-02-23 13:24:46,946 [pN:main,p:76107,tN:MainThread] Enabling 'RequestIDMiddleware' middleware galaxy.webapps.util DEBUG 2024-02-23 13:24:46,946 [pN:main,p:76107,tN:MainThread] Enabling 'build_url_map' middleware galaxy.webapps.galaxy.buildapp DEBUG 2024-02-23 13:24:46,946 [pN:main,p:76107,tN:MainThread] Prior to webapp return, Galaxy thread <_MainThread(MainThread, started 139763045857088)> is alive. galaxy.web_stack DEBUG 2024-02-23 13:24:48,550 [pN:main.1,p:76310,tN:Thread-2] server_name set to: main.1 galaxy.jobs.manager DEBUG 2024-02-23 13:24:48,552 [pN:main.1,p:76310,tN:Thread-2] Initializing job handler galaxy.jobs INFO 2024-02-23 13:24:48,552 [pN:main.1,p:76310,tN:Thread-2] Handler 'main.1' will load all configured runner plugins galaxy.jobs.runners.state_handler_factory DEBUG 2024-02-23 13:24:48,561 [pN:main.1,p:76310,tN:Thread-2] Loaded 'failure' state handler from module galaxy.jobs.runners.state_handlers.resubmit galaxy.jobs DEBUG 2024-02-23 13:24:48,562 [pN:main.1,p:76310,tN:Thread-2] Loaded job runner 'galaxy.jobs.runners.local:LocalJobRunner' as 'local' galaxy.jobs.handler DEBUG 2024-02-23 13:24:48,562 [pN:main.1,p:76310,tN:Thread-2] Loaded job runners plugins: local galaxy.jobs.runners DEBUG 2024-02-23 13:24:48,562 [pN:main.1,p:76310,tN:Thread-2] Starting 4 LocalRunner workers galaxy.jobs.handler DEBUG 2024-02-23 13:24:48,577 [pN:main.1,p:76310,tN:Thread-2] Handler queue starting for jobs assigned to handler: main.1 galaxy.jobs.handler INFO 2024-02-23 13:24:48,615 [pN:main.1,p:76310,tN:JobHandlerQueue.monitor_thread] Handler job grabber initialized with 'HANDLER_ASSIGNMENT_METHODS.DB_SKIP_LOCKED' assignment method for handler 'main.1', tag(s): galaxy.jobs.handler INFO 2024-02-23 13:24:48,617 [pN:main.1,p:76310,tN:Thread-2] job handler queue started galaxy.jobs.handler INFO 2024-02-23 13:24:48,623 [pN:main.1,p:76310,tN:Thread-2] job handler stop queue started galaxy.jobs.handler INFO 2024-02-23 13:24:48,626 [pN:main.1,p:76310,tN:WorkflowRequestMonitor.monitor_thread] Handler job grabber initialized with 'HANDLER_ASSIGNMENT_METHODS.DB_SKIP_LOCKED' assignment method for handler 'main.1', tag(s): _default_, None galaxy.queue_worker INFO 2024-02-23 13:24:48,633 [pN:main.1,p:76310,tN:Thread-2] Binding and starting galaxy control worker for main.1 galaxy.queue_worker DEBUG 2024-02-23 13:24:48,648 [pN:main.1,p:76310,tN:Thread-2] Executing toolbox reload on 'main.1' galaxy.util WARNING 2024-02-23 13:24:48,716 [pN:main.1,p:76310,tN:Thread-2] directory not found: /scratch/rico/galaxy/lib/galaxy/util/../../../config/plugins/activities galaxy.tools WARNING 2024-02-23 13:24:48,730 [pN:main.1,p:76310,tN:Thread-2] The default shed tool config file (/tmp/tmpu7x63f_i/shed_tool_conf.xml) has been added to the tool_config_file option, if this is not the desired behavior, please set shed_tool_config_file to your primary shed-enabled tool config file galaxy.tool_util.toolbox.base INFO 2024-02-23 13:24:48,730 [pN:main.1,p:76310,tN:Thread-2] Parsing the tool configuration /tmp/tmpu7x63f_i/tool_conf.xml galaxy.tool_util.toolbox.base DEBUG 2024-02-23 13:24:48,731 [pN:main.1,p:76310,tN:Thread-2] Tool path for tool configuration /tmp/tmpu7x63f_i/tool_conf.xml is None galaxy.tools WARNING 2024-02-23 13:24:48,731 [pN:main.1,p:76310,tN:Thread-2] The default shed tool config file (/tmp/tmpu7x63f_i/shed_tool_conf.xml) has been added to the tool_config_file option, if this is not the desired behavior, please set shed_tool_config_file to your primary shed-enabled tool config file galaxy.tool_util.toolbox.base INFO 2024-02-23 13:24:48,731 [pN:main.1,p:76310,tN:Thread-2] Parsing the tool configuration /tmp/tmpu7x63f_i/shed_tools_conf.xml galaxy.tool_util.toolbox.base DEBUG 2024-02-23 13:24:48,732 [pN:main.1,p:76310,tN:Thread-2] Tool path for shed tool configuration /tmp/tmpu7x63f_i/shed_tools_conf.xml is /tmp/tmpu7x63f_i/shed_tools galaxy.tools WARNING 2024-02-23 13:24:48,732 [pN:main.1,p:76310,tN:Thread-2] The default shed tool config file (/tmp/tmpu7x63f_i/shed_tool_conf.xml) has been added to the tool_config_file option, if this is not the desired behavior, please set shed_tool_config_file to your primary shed-enabled tool config file galaxy.tool_util.toolbox.base INFO 2024-02-23 13:24:48,732 [pN:main.1,p:76310,tN:Thread-2] Parsing the tool configuration /tmp/tmpu7x63f_i/empty_tool_conf.xml galaxy.tool_util.toolbox.base DEBUG 2024-02-23 13:24:48,732 [pN:main.1,p:76310,tN:Thread-2] Tool path for tool configuration /tmp/tmpu7x63f_i/empty_tool_conf.xml is None galaxy.tool_util.toolbox.base DEBUG 2024-02-23 13:24:48,732 [pN:main.1,p:76310,tN:Thread-2] Reading tools from config files finished (2.373 ms) galaxy.tool_util.toolbox.base DEBUG 2024-02-23 13:24:48,733 [pN:main.1,p:76310,tN:Thread-2] Loaded tool id: upload1, version: 1.1.7 into tool panel.. galaxy.tool_util.toolbox.base DEBUG 2024-02-23 13:24:48,733 [pN:main.1,p:76310,tN:Thread-2] Loading tool panel finished (0.504 ms) galaxy.tool_util.toolbox.base DEBUG 2024-02-23 13:24:48,737 [pN:main.1,p:76310,tN:Thread-2] Loaded tool id: upload1, version: 1.1.7 into tool panel.. galaxy.tool_util.toolbox.views.edam DEBUG 2024-02-23 13:24:48,737 [pN:main.1,p:76310,tN:Thread-2] Loading EDAM tool panel finished (4.084 ms) galaxy.tool_util.toolbox.base DEBUG 2024-02-23 13:24:48,739 [pN:main.1,p:76310,tN:Thread-2] Loaded tool id: upload1, version: 1.1.7 into tool panel.. galaxy.tool_util.toolbox.views.edam DEBUG 2024-02-23 13:24:48,739 [pN:main.1,p:76310,tN:Thread-2] Loading EDAM tool panel finished (1.589 ms) galaxy.datatypes.registry DEBUG 2024-02-23 13:24:48,740 [pN:main.1,p:76310,tN:Thread-2] Loaded converter: CONVERTER_uncompressed_to_gz galaxy.datatypes.registry DEBUG 2024-02-23 13:24:48,740 [pN:main.1,p:76310,tN:Thread-2] Loaded converter: CONVERTER_gz_to_uncompressed galaxy.datatypes.registry DEBUG 2024-02-23 13:24:48,741 [pN:main.1,p:76310,tN:Thread-2] Loaded converter: CONVERTER_uncompressed_to_gz galaxy.datatypes.registry DEBUG 2024-02-23 13:24:48,741 [pN:main.1,p:76310,tN:Thread-2] Loaded converter: CONVERTER_gz_to_uncompressed galaxy.datatypes.registry DEBUG 2024-02-23 13:24:48,741 [pN:main.1,p:76310,tN:Thread-2] Loaded converter: CONVERTER_uncompressed_to_gz galaxy.datatypes.registry DEBUG 2024-02-23 13:24:48,742 [pN:main.1,p:76310,tN:Thread-2] Loaded converter: CONVERTER_gz_to_uncompressed galaxy.datatypes.registry DEBUG 2024-02-23 13:24:48,742 [pN:main.1,p:76310,tN:Thread-2] Loaded converter: CONVERTER_Bam_Bai_0 galaxy.datatypes.registry DEBUG 2024-02-23 13:24:48,743 [pN:main.1,p:76310,tN:Thread-2] Loaded converter: CONVERTER_bam_to_bigwig_0 galaxy.datatypes.registry DEBUG 2024-02-23 13:24:48,745 [pN:main.1,p:76310,tN:Thread-2] Loaded converter: CONVERTER_bam_to_qname_sorted_bam galaxy.datatypes.registry DEBUG 2024-02-23 13:24:48,746 [pN:main.1,p:76310,tN:Thread-2] Loaded converter: CONVERTER_bam_to_bigwig_0 galaxy.datatypes.registry DEBUG 2024-02-23 13:24:48,746 [pN:main.1,p:76310,tN:Thread-2] Loaded converter: CONVERTER_bam_to_coodinate_sorted_bam galaxy.datatypes.registry DEBUG 2024-02-23 13:24:48,746 [pN:main.1,p:76310,tN:Thread-2] Loaded converter: CONVERTER_bam_to_qname_sorted_bam galaxy.model.database_heartbeat DEBUG 2024-02-23 13:24:48,746 [pN:main.1,p:76310,tN:database_heartbeart_main.1.thread] main.1 is config watcher galaxy.datatypes.registry DEBUG 2024-02-23 13:24:48,748 [pN:main.1,p:76310,tN:Thread-2] Loaded converter: CONVERTER_cram_to_bam_0 galaxy.datatypes.registry DEBUG 2024-02-23 13:24:48,750 [pN:main.1,p:76310,tN:Thread-2] Loaded converter: CONVERTER_bed_to_gff_0 galaxy.datatypes.registry DEBUG 2024-02-23 13:24:48,751 [pN:main.1,p:76310,tN:Thread-2] Loaded converter: CONVERTER_interval_to_bgzip_0 galaxy.datatypes.registry DEBUG 2024-02-23 13:24:48,752 [pN:main.1,p:76310,tN:Thread-2] Loaded converter: CONVERTER_interval_to_tabix_0 galaxy.datatypes.registry DEBUG 2024-02-23 13:24:48,752 [pN:main.1,p:76310,tN:Thread-2] Loaded converter: CONVERTER_bed_gff_or_vcf_to_bigwig_0 galaxy.datatypes.registry DEBUG 2024-02-23 13:24:48,753 [pN:main.1,p:76310,tN:Thread-2] Loaded converter: CONVERTER_bed_to_fli_0 galaxy.datatypes.registry DEBUG 2024-02-23 13:24:48,753 [pN:main.1,p:76310,tN:Thread-2] Loaded converter: CONVERTER_bedgraph_to_bigwig galaxy.datatypes.registry DEBUG 2024-02-23 13:24:48,753 [pN:main.1,p:76310,tN:Thread-2] Loaded converter: CONVERTER_len_to_linecount galaxy.datatypes.registry DEBUG 2024-02-23 13:24:48,753 [pN:main.1,p:76310,tN:Thread-2] Loaded converter: CONVERTER_parquet_to_csv galaxy.datatypes.registry DEBUG 2024-02-23 13:24:48,753 [pN:main.1,p:76310,tN:Thread-2] Loaded converter: bigwigtowig galaxy.datatypes.registry DEBUG 2024-02-23 13:24:48,753 [pN:main.1,p:76310,tN:Thread-2] Loaded converter: CONVERTER_interval_to_bgzip_0 galaxy.datatypes.registry DEBUG 2024-02-23 13:24:48,753 [pN:main.1,p:76310,tN:Thread-2] Loaded converter: CONVERTER_interval_to_tabix_0 galaxy.datatypes.registry DEBUG 2024-02-23 13:24:48,754 [pN:main.1,p:76310,tN:Thread-2] Loaded converter: CONVERTER_bed_gff_or_vcf_to_bigwig_0 galaxy.datatypes.registry DEBUG 2024-02-23 13:24:48,754 [pN:main.1,p:76310,tN:Thread-2] Loaded converter: csv_to_tabular galaxy.datatypes.registry DEBUG 2024-02-23 13:24:48,754 [pN:main.1,p:76310,tN:Thread-2] Loaded converter: tabular_to_csv galaxy.datatypes.registry DEBUG 2024-02-23 13:24:48,754 [pN:main.1,p:76310,tN:Thread-2] Loaded converter: CONVERTER_fasta_to_tabular galaxy.datatypes.registry DEBUG 2024-02-23 13:24:48,755 [pN:main.1,p:76310,tN:Thread-2] Loaded converter: CONVERTER_fasta_to_bowtie_base_index galaxy.datatypes.registry DEBUG 2024-02-23 13:24:48,755 [pN:main.1,p:76310,tN:Thread-2] Loaded converter: CONVERTER_fasta_to_bowtie_color_index galaxy.datatypes.registry DEBUG 2024-02-23 13:24:48,755 [pN:main.1,p:76310,tN:Thread-2] Loaded converter: CONVERTER_fasta_to_2bit galaxy.datatypes.registry DEBUG 2024-02-23 13:24:48,756 [pN:main.1,p:76310,tN:Thread-2] Loaded converter: CONVERTER_fasta_to_len galaxy.datatypes.registry DEBUG 2024-02-23 13:24:48,756 [pN:main.1,p:76310,tN:Thread-2] Loaded converter: CONVERTER_fasta_to_fai galaxy.datatypes.registry DEBUG 2024-02-23 13:24:48,757 [pN:main.1,p:76310,tN:Thread-2] Loaded converter: CONVERTER_uncompressed_to_gz galaxy.datatypes.registry DEBUG 2024-02-23 13:24:48,757 [pN:main.1,p:76310,tN:Thread-2] Loaded converter: CONVERTER_gz_to_uncompressed galaxy.datatypes.registry DEBUG 2024-02-23 13:24:48,757 [pN:main.1,p:76310,tN:Thread-2] Loaded converter: CONVERTER_fastq_to_fqtoc0 galaxy.datatypes.registry DEBUG 2024-02-23 13:24:48,765 [pN:main.1,p:76310,tN:Thread-2] Loaded converter: CONVERTER_uncompressed_to_gz galaxy.datatypes.registry DEBUG 2024-02-23 13:24:48,766 [pN:main.1,p:76310,tN:Thread-2] Loaded converter: CONVERTER_gz_to_uncompressed galaxy.datatypes.registry DEBUG 2024-02-23 13:24:48,766 [pN:main.1,p:76310,tN:Thread-2] Loaded converter: CONVERTER_bz2_to_uncompressed galaxy.datatypes.registry DEBUG 2024-02-23 13:24:48,766 [pN:main.1,p:76310,tN:Thread-2] Loaded converter: CONVERTER_fastq_to_fqtoc0 galaxy.datatypes.registry DEBUG 2024-02-23 13:24:48,766 [pN:main.1,p:76310,tN:Thread-2] Loaded converter: CONVERTER_uncompressed_to_gz galaxy.datatypes.registry DEBUG 2024-02-23 13:24:48,766 [pN:main.1,p:76310,tN:Thread-2] Loaded converter: CONVERTER_gz_to_uncompressed galaxy.datatypes.registry DEBUG 2024-02-23 13:24:48,766 [pN:main.1,p:76310,tN:Thread-2] Loaded converter: CONVERTER_bz2_to_uncompressed galaxy.datatypes.registry DEBUG 2024-02-23 13:24:48,767 [pN:main.1,p:76310,tN:Thread-2] Loaded converter: CONVERTER_fastq_to_fqtoc0 galaxy.datatypes.registry DEBUG 2024-02-23 13:24:48,767 [pN:main.1,p:76310,tN:Thread-2] Loaded converter: CONVERTER_uncompressed_to_gz galaxy.datatypes.registry DEBUG 2024-02-23 13:24:48,767 [pN:main.1,p:76310,tN:Thread-2] Loaded converter: CONVERTER_gz_to_uncompressed galaxy.datatypes.registry DEBUG 2024-02-23 13:24:48,767 [pN:main.1,p:76310,tN:Thread-2] Loaded converter: CONVERTER_bz2_to_uncompressed galaxy.datatypes.registry DEBUG 2024-02-23 13:24:48,767 [pN:main.1,p:76310,tN:Thread-2] Loaded converter: CONVERTER_fastq_to_fqtoc0 galaxy.datatypes.registry DEBUG 2024-02-23 13:24:48,768 [pN:main.1,p:76310,tN:Thread-2] Loaded converter: CONVERTER_uncompressed_to_gz galaxy.datatypes.registry DEBUG 2024-02-23 13:24:48,768 [pN:main.1,p:76310,tN:Thread-2] Loaded converter: CONVERTER_gz_to_uncompressed galaxy.datatypes.registry DEBUG 2024-02-23 13:24:48,768 [pN:main.1,p:76310,tN:Thread-2] Loaded converter: CONVERTER_bz2_to_uncompressed galaxy.datatypes.registry DEBUG 2024-02-23 13:24:48,768 [pN:main.1,p:76310,tN:Thread-2] Loaded converter: CONVERTER_fastq_to_fqtoc0 galaxy.datatypes.registry DEBUG 2024-02-23 13:24:48,769 [pN:main.1,p:76310,tN:Thread-2] Loaded converter: CONVERTER_uncompressed_to_gz galaxy.datatypes.registry DEBUG 2024-02-23 13:24:48,769 [pN:main.1,p:76310,tN:Thread-2] Loaded converter: CONVERTER_gz_to_uncompressed galaxy.datatypes.registry DEBUG 2024-02-23 13:24:48,769 [pN:main.1,p:76310,tN:Thread-2] Loaded converter: CONVERTER_bz2_to_uncompressed galaxy.datatypes.registry DEBUG 2024-02-23 13:24:48,769 [pN:main.1,p:76310,tN:Thread-2] Loaded converter: CONVERTER_gff_to_bed_0 galaxy.datatypes.registry DEBUG 2024-02-23 13:24:48,770 [pN:main.1,p:76310,tN:Thread-2] Loaded converter: CONVERTER_gff_to_interval_index_0 galaxy.datatypes.registry DEBUG 2024-02-23 13:24:48,770 [pN:main.1,p:76310,tN:Thread-2] Loaded converter: CONVERTER_bed_gff_or_vcf_to_bigwig_0 galaxy.datatypes.registry DEBUG 2024-02-23 13:24:48,770 [pN:main.1,p:76310,tN:Thread-2] Loaded converter: CONVERTER_gff_to_fli_0 galaxy.datatypes.registry DEBUG 2024-02-23 13:24:48,770 [pN:main.1,p:76310,tN:Thread-2] Loaded converter: CONVERTER_interval_to_bgzip_0 galaxy.datatypes.registry DEBUG 2024-02-23 13:24:48,771 [pN:main.1,p:76310,tN:Thread-2] Loaded converter: CONVERTER_interval_to_tabix_0 galaxy.datatypes.registry DEBUG 2024-02-23 13:24:48,771 [pN:main.1,p:76310,tN:Thread-2] Loaded converter: CONVERTER_uncompressed_to_gz galaxy.datatypes.registry DEBUG 2024-02-23 13:24:48,771 [pN:main.1,p:76310,tN:Thread-2] Loaded converter: CONVERTER_gz_to_uncompressed galaxy.datatypes.registry DEBUG 2024-02-23 13:24:48,771 [pN:main.1,p:76310,tN:Thread-2] Loaded converter: CONVERTER_bz2_to_uncompressed galaxy.datatypes.registry DEBUG 2024-02-23 13:24:48,771 [pN:main.1,p:76310,tN:Thread-2] Loaded converter: CONVERTER_gff_to_interval_index_0 galaxy.datatypes.registry DEBUG 2024-02-23 13:24:48,772 [pN:main.1,p:76310,tN:Thread-2] Loaded converter: CONVERTER_bed_gff_or_vcf_to_bigwig_0 galaxy.datatypes.registry DEBUG 2024-02-23 13:24:48,772 [pN:main.1,p:76310,tN:Thread-2] Loaded converter: CONVERTER_interval_to_bed_0 galaxy.datatypes.registry DEBUG 2024-02-23 13:24:48,772 [pN:main.1,p:76310,tN:Thread-2] Loaded converter: CONVERTER_interval_to_bedstrict_0 galaxy.datatypes.registry DEBUG 2024-02-23 13:24:48,773 [pN:main.1,p:76310,tN:Thread-2] Loaded converter: CONVERTER_interval_to_bed6_0 galaxy.datatypes.registry DEBUG 2024-02-23 13:24:48,773 [pN:main.1,p:76310,tN:Thread-2] Loaded converter: CONVERTER_interval_to_bed12_0 galaxy.datatypes.registry DEBUG 2024-02-23 13:24:48,773 [pN:main.1,p:76310,tN:Thread-2] Loaded converter: CONVERTER_interval_to_bgzip_0 galaxy.datatypes.registry DEBUG 2024-02-23 13:24:48,774 [pN:main.1,p:76310,tN:Thread-2] Loaded converter: CONVERTER_interval_to_tabix_0 galaxy.datatypes.registry DEBUG 2024-02-23 13:24:48,774 [pN:main.1,p:76310,tN:Thread-2] Loaded converter: CONVERTER_interval_to_bigwig_0 galaxy.datatypes.registry DEBUG 2024-02-23 13:24:48,774 [pN:main.1,p:76310,tN:Thread-2] Loaded converter: CONVERTER_picard_interval_list_to_bed6 galaxy.datatypes.registry DEBUG 2024-02-23 13:24:48,774 [pN:main.1,p:76310,tN:Thread-2] Loaded converter: CONVERTER_tar_to_directory galaxy.datatypes.registry DEBUG 2024-02-23 13:24:48,775 [pN:main.1,p:76310,tN:Thread-2] Loaded converter: CONVERTER_uncompressed_to_gz galaxy.datatypes.registry DEBUG 2024-02-23 13:24:48,775 [pN:main.1,p:76310,tN:Thread-2] Loaded converter: CONVERTER_gz_to_uncompressed galaxy.datatypes.registry DEBUG 2024-02-23 13:24:48,775 [pN:main.1,p:76310,tN:Thread-2] Loaded converter: CONVERTER_uncompressed_to_gz galaxy.datatypes.registry DEBUG 2024-02-23 13:24:48,775 [pN:main.1,p:76310,tN:Thread-2] Loaded converter: CONVERTER_gz_to_uncompressed galaxy.datatypes.registry DEBUG 2024-02-23 13:24:48,776 [pN:main.1,p:76310,tN:Thread-2] Loaded converter: CONVERTER_uncompressed_to_gz galaxy.datatypes.registry DEBUG 2024-02-23 13:24:48,776 [pN:main.1,p:76310,tN:Thread-2] Loaded converter: CONVERTER_gz_to_uncompressed galaxy.datatypes.registry DEBUG 2024-02-23 13:24:48,776 [pN:main.1,p:76310,tN:Thread-2] Loaded converter: CONVERTER_maf_to_fasta_0 galaxy.datatypes.registry DEBUG 2024-02-23 13:24:48,776 [pN:main.1,p:76310,tN:Thread-2] Loaded converter: CONVERTER_maf_to_interval_0 galaxy.datatypes.registry DEBUG 2024-02-23 13:24:48,776 [pN:main.1,p:76310,tN:Thread-2] Loaded converter: CONVERTER_interval_to_tabix_0 galaxy.datatypes.registry DEBUG 2024-02-23 13:24:48,776 [pN:main.1,p:76310,tN:Thread-2] Loaded converter: CONVERTER_interval_to_bgzip_0 galaxy.datatypes.registry DEBUG 2024-02-23 13:24:48,777 [pN:main.1,p:76310,tN:Thread-2] Loaded converter: CONVERTER_bed_gff_or_vcf_to_bigwig_0 galaxy.datatypes.registry DEBUG 2024-02-23 13:24:48,777 [pN:main.1,p:76310,tN:Thread-2] Loaded converter: CONVERTER_interval_to_bgzip_0 galaxy.datatypes.registry DEBUG 2024-02-23 13:24:48,777 [pN:main.1,p:76310,tN:Thread-2] Loaded converter: CONVERTER_interval_to_tabix_0 galaxy.datatypes.registry DEBUG 2024-02-23 13:24:48,777 [pN:main.1,p:76310,tN:Thread-2] Loaded converter: CONVERTER_sam_to_unsorted_bam galaxy.datatypes.registry DEBUG 2024-02-23 13:24:48,778 [pN:main.1,p:76310,tN:Thread-2] Loaded converter: CONVERTER_bam_to_coodinate_sorted_bam galaxy.datatypes.registry DEBUG 2024-02-23 13:24:48,778 [pN:main.1,p:76310,tN:Thread-2] Loaded converter: CONVERTER_bam_to_qname_sorted_bam galaxy.datatypes.registry DEBUG 2024-02-23 13:24:48,778 [pN:main.1,p:76310,tN:Thread-2] Loaded converter: CONVERTER_sam_to_bigwig_0 galaxy.datatypes.registry DEBUG 2024-02-23 13:24:48,778 [pN:main.1,p:76310,tN:Thread-2] Loaded converter: tabular_to_dbnsfp galaxy.datatypes.registry DEBUG 2024-02-23 13:24:48,778 [pN:main.1,p:76310,tN:Thread-2] Loaded converter: tabular_to_csv galaxy.datatypes.registry DEBUG 2024-02-23 13:24:48,779 [pN:main.1,p:76310,tN:Thread-2] Loaded converter: CONVERTER_uncompressed_to_gz galaxy.datatypes.registry DEBUG 2024-02-23 13:24:48,779 [pN:main.1,p:76310,tN:Thread-2] Loaded converter: CONVERTER_gz_to_uncompressed galaxy.datatypes.registry DEBUG 2024-02-23 13:24:48,779 [pN:main.1,p:76310,tN:Thread-2] Loaded converter: CONVERTER_interval_to_bgzip_0 galaxy.datatypes.registry DEBUG 2024-02-23 13:24:48,779 [pN:main.1,p:76310,tN:Thread-2] Loaded converter: CONVERTER_vcf_to_vcf_bgzip_0 galaxy.datatypes.registry DEBUG 2024-02-23 13:24:48,780 [pN:main.1,p:76310,tN:Thread-2] Loaded converter: CONVERTER_interval_to_tabix_0 galaxy.datatypes.registry DEBUG 2024-02-23 13:24:48,780 [pN:main.1,p:76310,tN:Thread-2] Loaded converter: CONVERTER_bed_gff_or_vcf_to_bigwig_0 galaxy.datatypes.registry DEBUG 2024-02-23 13:24:48,780 [pN:main.1,p:76310,tN:Thread-2] Loaded converter: CONVERTER_uncompressed_to_gz galaxy.datatypes.registry DEBUG 2024-02-23 13:24:48,781 [pN:main.1,p:76310,tN:Thread-2] Loaded converter: CONVERTER_bcf_uncompressed_to_bcf galaxy.datatypes.registry DEBUG 2024-02-23 13:24:48,781 [pN:main.1,p:76310,tN:Thread-2] Loaded converter: CONVERTER_bcf_uncompressed_to_bcf galaxy.datatypes.registry DEBUG 2024-02-23 13:24:48,781 [pN:main.1,p:76310,tN:Thread-2] Loaded converter: CONVERTER_wig_to_bigwig galaxy.datatypes.registry DEBUG 2024-02-23 13:24:48,781 [pN:main.1,p:76310,tN:Thread-2] Loaded converter: CONVERTER_wiggle_to_interval_0 galaxy.datatypes.registry DEBUG 2024-02-23 13:24:48,781 [pN:main.1,p:76310,tN:Thread-2] Loaded converter: CONVERTER_vcf_bgzip_to_tabix_0 galaxy.datatypes.registry DEBUG 2024-02-23 13:24:48,782 [pN:main.1,p:76310,tN:Thread-2] Loaded converter: CONVERTER_gz_to_uncompressed galaxy.datatypes.registry DEBUG 2024-02-23 13:24:48,782 [pN:main.1,p:76310,tN:Thread-2] Loaded converter: lped2fpedconvert galaxy.datatypes.registry DEBUG 2024-02-23 13:24:48,782 [pN:main.1,p:76310,tN:Thread-2] Loaded converter: lped2pbedconvert galaxy.datatypes.registry DEBUG 2024-02-23 13:24:48,782 [pN:main.1,p:76310,tN:Thread-2] Loaded converter: pbed2lpedconvert galaxy.datatypes.registry DEBUG 2024-02-23 13:24:48,782 [pN:main.1,p:76310,tN:Thread-2] Loaded converter: pbed2ldindepconvert galaxy.datatypes.registry DEBUG 2024-02-23 13:24:48,783 [pN:main.1,p:76310,tN:Thread-2] Loaded converter: CONVERTER_uncompressed_to_gz galaxy.datatypes.registry DEBUG 2024-02-23 13:24:48,783 [pN:main.1,p:76310,tN:Thread-2] Loaded converter: CONVERTER_gz_to_uncompressed galaxy.datatypes.registry DEBUG 2024-02-23 13:24:48,783 [pN:main.1,p:76310,tN:Thread-2] Loaded converter: CONVERTER_biom galaxy.datatypes.registry DEBUG 2024-02-23 13:24:48,783 [pN:main.1,p:76310,tN:Thread-2] Loaded converter: CONVERTER_biom galaxy.datatypes.registry DEBUG 2024-02-23 13:24:48,783 [pN:main.1,p:76310,tN:Thread-2] Loaded converter: CONVERTER_molecules galaxy.datatypes.registry DEBUG 2024-02-23 13:24:48,784 [pN:main.1,p:76310,tN:Thread-2] Loaded converter: CONVERTER_molecules galaxy.datatypes.registry DEBUG 2024-02-23 13:24:48,784 [pN:main.1,p:76310,tN:Thread-2] Loaded converter: CONVERTER_molecules galaxy.datatypes.registry DEBUG 2024-02-23 13:24:48,784 [pN:main.1,p:76310,tN:Thread-2] Loaded converter: CONVERTER_SMILES_to_MOL galaxy.datatypes.registry DEBUG 2024-02-23 13:24:48,784 [pN:main.1,p:76310,tN:Thread-2] Loaded converter: CONVERTER_molecules galaxy.datatypes.registry DEBUG 2024-02-23 13:24:48,784 [pN:main.1,p:76310,tN:Thread-2] Loaded converter: CONVERTER_smiles_to_smiles galaxy.datatypes.registry DEBUG 2024-02-23 13:24:48,785 [pN:main.1,p:76310,tN:Thread-2] Loaded converter: CONVERTER_molecules galaxy.datatypes.registry DEBUG 2024-02-23 13:24:48,785 [pN:main.1,p:76310,tN:Thread-2] Loaded converter: CONVERTER_molecules galaxy.datatypes.registry DEBUG 2024-02-23 13:24:48,785 [pN:main.1,p:76310,tN:Thread-2] Loaded converter: CONVERTER_molecules galaxy.datatypes.registry DEBUG 2024-02-23 13:24:48,785 [pN:main.1,p:76310,tN:Thread-2] Loaded converter: CONVERTER_molecules galaxy.datatypes.registry DEBUG 2024-02-23 13:24:48,785 [pN:main.1,p:76310,tN:Thread-2] Loaded converter: CONVERTER_molecules galaxy.datatypes.registry DEBUG 2024-02-23 13:24:48,786 [pN:main.1,p:76310,tN:Thread-2] Loaded converter: CONVERTER_molecules galaxy.datatypes.registry DEBUG 2024-02-23 13:24:48,786 [pN:main.1,p:76310,tN:Thread-2] Loaded converter: CONVERTER_inchi_to_mol galaxy.datatypes.registry DEBUG 2024-02-23 13:24:48,787 [pN:main.1,p:76310,tN:Thread-2] Loaded converter: CONVERTER_molecules galaxy.datatypes.registry DEBUG 2024-02-23 13:24:48,787 [pN:main.1,p:76310,tN:Thread-2] Loaded converter: CONVERTER_molecules galaxy.datatypes.registry DEBUG 2024-02-23 13:24:48,787 [pN:main.1,p:76310,tN:Thread-2] Loaded converter: CONVERTER_molecules galaxy.datatypes.registry DEBUG 2024-02-23 13:24:48,787 [pN:main.1,p:76310,tN:Thread-2] Loaded converter: CONVERTER_molecules galaxy.datatypes.registry DEBUG 2024-02-23 13:24:48,787 [pN:main.1,p:76310,tN:Thread-2] Loaded converter: CONVERTER_molecules galaxy.datatypes.registry DEBUG 2024-02-23 13:24:48,799 [pN:main.1,p:76310,tN:Thread-2] Loaded converter: CONVERTER_molecules galaxy.datatypes.registry DEBUG 2024-02-23 13:24:48,799 [pN:main.1,p:76310,tN:Thread-2] Loaded converter: CONVERTER_molecules galaxy.datatypes.registry DEBUG 2024-02-23 13:24:48,800 [pN:main.1,p:76310,tN:Thread-2] Loaded converter: CONVERTER_molecules galaxy.datatypes.registry DEBUG 2024-02-23 13:24:48,800 [pN:main.1,p:76310,tN:Thread-2] Loaded converter: CONVERTER_molecules galaxy.datatypes.registry DEBUG 2024-02-23 13:24:48,800 [pN:main.1,p:76310,tN:Thread-2] Loaded converter: CONVERTER_molecules galaxy.datatypes.registry DEBUG 2024-02-23 13:24:48,800 [pN:main.1,p:76310,tN:Thread-2] Loaded converter: CONVERTER_mol2_to_mol galaxy.datatypes.registry DEBUG 2024-02-23 13:24:48,802 [pN:main.1,p:76310,tN:Thread-2] Loaded converter: CONVERTER_molecules galaxy.datatypes.registry DEBUG 2024-02-23 13:24:48,802 [pN:main.1,p:76310,tN:Thread-2] Loaded converter: CONVERTER_cml_to_smiles galaxy.datatypes.registry DEBUG 2024-02-23 13:24:48,802 [pN:main.1,p:76310,tN:Thread-2] Loaded converter: CONVERTER_molecules galaxy.datatypes.registry DEBUG 2024-02-23 13:24:48,802 [pN:main.1,p:76310,tN:Thread-2] Loaded converter: CONVERTER_molecules galaxy.datatypes.registry DEBUG 2024-02-23 13:24:48,803 [pN:main.1,p:76310,tN:Thread-2] Loaded converter: CONVERTER_molecules galaxy.datatypes.registry DEBUG 2024-02-23 13:24:48,803 [pN:main.1,p:76310,tN:Thread-2] Loaded converter: CONVERTER_Pdb_to_Gro_0 galaxy.datatypes.registry DEBUG 2024-02-23 13:24:48,803 [pN:main.1,p:76310,tN:Thread-2] Loaded converter: CONVERTER_mdconvert galaxy.datatypes.registry DEBUG 2024-02-23 13:24:48,803 [pN:main.1,p:76310,tN:Thread-2] Loaded converter: CONVERTER_mdconvert galaxy.datatypes.registry DEBUG 2024-02-23 13:24:48,803 [pN:main.1,p:76310,tN:Thread-2] Loaded converter: CONVERTER_mdconvert galaxy.datatypes.registry DEBUG 2024-02-23 13:24:48,803 [pN:main.1,p:76310,tN:Thread-2] Loaded converter: CONVERTER_mdconvert galaxy.datatypes.registry DEBUG 2024-02-23 13:24:48,804 [pN:main.1,p:76310,tN:Thread-2] Loaded converter: CONVERTER_mdconvert galaxy.datatypes.registry DEBUG 2024-02-23 13:24:48,804 [pN:main.1,p:76310,tN:Thread-2] Loaded converter: CONVERTER_mdconvert galaxy.datatypes.registry DEBUG 2024-02-23 13:24:48,804 [pN:main.1,p:76310,tN:Thread-2] Loaded converter: CONVERTER_Gro_to_Pdb_0 galaxy.datatypes.registry DEBUG 2024-02-23 13:24:48,806 [pN:main.1,p:76310,tN:Thread-2] Loaded converter: CONVERTER_ref_to_seq_taxomony galaxy.datatypes.registry DEBUG 2024-02-23 13:24:48,806 [pN:main.1,p:76310,tN:Thread-2] Loaded converter: CONVERTER_neostorezip_to_neostore galaxy.datatypes.registry DEBUG 2024-02-23 13:24:48,810 [pN:main.1,p:76310,tN:Thread-2] Loaded external metadata tool: __SET_METADATA__ galaxy.tools.special_tools DEBUG 2024-02-23 13:24:48,812 [pN:main.1,p:76310,tN:Thread-2] Loaded history export tool: __EXPORT_HISTORY__ galaxy.tools.special_tools DEBUG 2024-02-23 13:24:48,816 [pN:main.1,p:76310,tN:Thread-2] Loaded history export to uri tool: __EXPORT_HISTORY_TO_URI__ galaxy.tools.special_tools DEBUG 2024-02-23 13:24:48,817 [pN:main.1,p:76310,tN:Thread-2] Loaded history import tool: __IMPORT_HISTORY__ galaxy.tools.special_tools DEBUG 2024-02-23 13:24:48,820 [pN:main.1,p:76310,tN:Thread-2] Loaded data fetch tool: __DATA_FETCH__ galaxy.queue_worker INFO 2024-02-23 13:24:48,820 [pN:main.1,p:76310,tN:Thread-2] Queuing async task rebuild_toolbox_search_index for main.1. galaxy.queue_worker DEBUG 2024-02-23 13:24:48,835 [pN:main.1,p:76310,tN:Thread-2] Toolbox reload (188.007 ms) galaxy.queue_worker INFO 2024-02-23 13:24:48,836 [pN:main.1,p:76310,tN:Thread-2] Queuing async task rebuild_toolbox_search_index for main.1. galaxy.web_stack INFO 2024-02-23 13:24:48,844 [pN:main.1,p:76310,tN:Thread-2] Galaxy server instance 'main.1' is running [92m Serving on http://127.0.0.1:39427 [0m multipart.multipart DEBUG 2024-02-23 13:24:49,532 [pN:main.1,p:76310,tN:MainThread] Calling on_field_start with no data multipart.multipart DEBUG 2024-02-23 13:24:49,532 [pN:main.1,p:76310,tN:MainThread] Calling on_field_name with data[0:4] multipart.multipart DEBUG 2024-02-23 13:24:49,532 [pN:main.1,p:76310,tN:MainThread] Calling on_field_data with data[5:63] multipart.multipart DEBUG 2024-02-23 13:24:49,532 [pN:main.1,p:76310,tN:MainThread] Calling on_field_end with no data multipart.multipart DEBUG 2024-02-23 13:24:49,532 [pN:main.1,p:76310,tN:MainThread] Calling on_end with no data galaxy.tools INFO 2024-02-23 13:24:49,706 [pN:main.1,p:76310,tN:WSGI_0] Validated and populated state for tool request (11.250 ms) galaxy.tools.actions.upload DEBUG 2024-02-23 13:24:49,712 [pN:main.1,p:76310,tN:WSGI_0] Persisted uploads (0.123 ms) galaxy.tools.actions.upload DEBUG 2024-02-23 13:24:49,791 [pN:main.1,p:76310,tN:WSGI_0] Checked uploads (78.653 ms) galaxy.tools.actions.upload DEBUG 2024-02-23 13:24:49,794 [pN:main.1,p:76310,tN:WSGI_0] Created upload job (3.491 ms) galaxy.tools.execute DEBUG 2024-02-23 13:24:49,795 [pN:main.1,p:76310,tN:WSGI_0] Tool upload1 created job None (83.248 ms) galaxy.web_stack.handlers INFO 2024-02-23 13:24:49,831 [pN:main.1,p:76310,tN:WSGI_0] (Job[id=1,tool_id=upload1]) Handler '_default_' assigned using 'HANDLER_ASSIGNMENT_METHODS.DB_SKIP_LOCKED' assignment method galaxy.tools.execute DEBUG 2024-02-23 13:24:49,844 [pN:main.1,p:76310,tN:WSGI_0] Created 1 job(s) for tool upload1 request (137.341 ms) galaxy.queue_worker INFO 2024-02-23 13:24:49,860 [pN:main.1,p:76310,tN:Thread-1] Instance 'main.1' received 'rebuild_toolbox_search_index' task, executing now. galaxy.tools.search DEBUG 2024-02-23 13:24:49,860 [pN:main.1,p:76310,tN:Thread-1] Starting to build toolbox index of panel default. galaxy.tools.search DEBUG 2024-02-23 13:24:49,888 [pN:main.1,p:76310,tN:Thread-1] Toolbox index of panel default finished (27.744 ms) galaxy.tools.search DEBUG 2024-02-23 13:24:49,888 [pN:main.1,p:76310,tN:Thread-1] Starting to build toolbox index of panel ontology:edam_operations. galaxy.tools.search DEBUG 2024-02-23 13:24:49,906 [pN:main.1,p:76310,tN:Thread-1] Toolbox index of panel ontology:edam_operations finished (17.556 ms) galaxy.tools.search DEBUG 2024-02-23 13:24:49,906 [pN:main.1,p:76310,tN:Thread-1] Starting to build toolbox index of panel ontology:edam_topics. galaxy.tools.search DEBUG 2024-02-23 13:24:49,911 [pN:main.1,p:76310,tN:Thread-1] Toolbox index of panel ontology:edam_topics finished (4.644 ms) galaxy.queue_worker INFO 2024-02-23 13:24:49,933 [pN:main.1,p:76310,tN:Thread-1] Instance 'main.1' received 'rebuild_toolbox_search_index' task, executing now. galaxy.tools.search DEBUG 2024-02-23 13:24:49,933 [pN:main.1,p:76310,tN:Thread-1] Starting to build toolbox index of panel default. galaxy.tools.search DEBUG 2024-02-23 13:24:49,983 [pN:main.1,p:76310,tN:Thread-1] Toolbox index of panel default finished (48.967 ms) galaxy.tools.search DEBUG 2024-02-23 13:24:49,983 [pN:main.1,p:76310,tN:Thread-1] Starting to build toolbox index of panel ontology:edam_operations. galaxy.tools.search DEBUG 2024-02-23 13:24:49,988 [pN:main.1,p:76310,tN:Thread-1] Toolbox index of panel ontology:edam_operations finished (5.496 ms) galaxy.tools.search DEBUG 2024-02-23 13:24:49,989 [pN:main.1,p:76310,tN:Thread-1] Starting to build toolbox index of panel ontology:edam_topics. galaxy.tools.search DEBUG 2024-02-23 13:24:49,993 [pN:main.1,p:76310,tN:Thread-1] Toolbox index of panel ontology:edam_topics finished (4.199 ms) galaxy.jobs.mapper DEBUG 2024-02-23 13:24:50,870 [pN:main.1,p:76310,tN:JobHandlerQueue.monitor_thread] (1) Mapped job to destination id: docker_local galaxy.jobs.handler DEBUG 2024-02-23 13:24:50,885 [pN:main.1,p:76310,tN:JobHandlerQueue.monitor_thread] (1) Dispatching to local runner galaxy.jobs DEBUG 2024-02-23 13:24:50,899 [pN:main.1,p:76310,tN:JobHandlerQueue.monitor_thread] (1) Persisting job destination (destination id: docker_local) galaxy.jobs DEBUG 2024-02-23 13:24:50,910 [pN:main.1,p:76310,tN:JobHandlerQueue.monitor_thread] (1) Working directory for job is: /tmp/tmpu7x63f_i/job_working_directory/000/1 galaxy.jobs.runners DEBUG 2024-02-23 13:24:50,917 [pN:main.1,p:76310,tN:JobHandlerQueue.monitor_thread] Job [1] queued (30.885 ms) galaxy.jobs.handler INFO 2024-02-23 13:24:50,928 [pN:main.1,p:76310,tN:JobHandlerQueue.monitor_thread] (1) Job dispatched galaxy.jobs DEBUG 2024-02-23 13:24:51,023 [pN:main.1,p:76310,tN:LocalRunner.work_thread-0] Job wrapper for Job [1] prepared (87.577 ms) galaxy.tool_util.deps.containers INFO 2024-02-23 13:24:51,024 [pN:main.1,p:76310,tN:LocalRunner.work_thread-0] Checking with container resolver [ExplicitContainerResolver[]] found description [None] galaxy.tool_util.deps.containers INFO 2024-02-23 13:24:51,024 [pN:main.1,p:76310,tN:LocalRunner.work_thread-0] Checking with container resolver [CachedMulledDockerContainerResolver[namespace=biocontainers]] found description [None] galaxy.tool_util.deps.containers INFO 2024-02-23 13:24:51,024 [pN:main.1,p:76310,tN:LocalRunner.work_thread-0] Checking with container resolver [CachedMulledDockerContainerResolver[namespace=local]] found description [None] galaxy.tool_util.deps.containers INFO 2024-02-23 13:24:51,024 [pN:main.1,p:76310,tN:LocalRunner.work_thread-0] Checking with container resolver [MulledDockerContainerResolver[namespace=biocontainers]] found description [None] galaxy.tool_util.deps.containers INFO 2024-02-23 13:24:51,024 [pN:main.1,p:76310,tN:LocalRunner.work_thread-0] Checking with container resolver [BuildDockerContainerResolver[namespace=local]] found description [None] galaxy.jobs.command_factory INFO 2024-02-23 13:24:51,052 [pN:main.1,p:76310,tN:LocalRunner.work_thread-0] Built script [/tmp/tmpu7x63f_i/job_working_directory/000/1/tool_script.sh] for tool command [python '/scratch/rico/galaxy/tools/data_source/upload.py' '/scratch/rico/galaxy' '/tmp/tmpu7x63f_i/job_working_directory/000/1/registry.xml' '/tmp/tmpu7x63f_i/job_working_directory/000/1/upload_params.json' '1:/tmp/tmpu7x63f_i/job_working_directory/000/1/outputs/dataset_eec98b5f-f9be-4dc5-96b4-503ed9063d81_files:/tmp/tmpu7x63f_i/job_working_directory/000/1/outputs/dataset_eec98b5f-f9be-4dc5-96b4-503ed9063d81.dat'] galaxy.jobs.runners DEBUG 2024-02-23 13:24:51,107 [pN:main.1,p:76310,tN:LocalRunner.work_thread-0] (1) command is: mkdir -p working outputs configs if [ -d _working ]; then rm -rf working/ outputs/ configs/; cp -R _working working; cp -R _outputs outputs; cp -R _configs configs else cp -R working _working; cp -R outputs _outputs; cp -R configs _configs fi cd working; /bin/bash /tmp/tmpu7x63f_i/job_working_directory/000/1/tool_script.sh > '../outputs/tool_stdout' 2> '../outputs/tool_stderr'; return_code=$?; echo $return_code > /tmp/tmpu7x63f_i/job_working_directory/000/1/galaxy_1.ec; cd '/tmp/tmpu7x63f_i/job_working_directory/000/1'; [ "$GALAXY_VIRTUAL_ENV" = "None" ] && GALAXY_VIRTUAL_ENV="$_GALAXY_VIRTUAL_ENV"; _galaxy_setup_environment True; python metadata/set.py; sh -c "exit $return_code" galaxy.jobs.runners.local DEBUG 2024-02-23 13:24:51,129 [pN:main.1,p:76310,tN:LocalRunner.work_thread-0] (1) executing job script: /tmp/tmpu7x63f_i/job_working_directory/000/1/galaxy_1.sh galaxy.jobs.runners.util.process_groups DEBUG 2024-02-23 13:24:56,804 [pN:main.1,p:76310,tN:LocalRunner.work_thread-0] check_pg(): No process found in process group 76332 galaxy.jobs.runners.local DEBUG 2024-02-23 13:24:56,805 [pN:main.1,p:76310,tN:LocalRunner.work_thread-0] execution finished: /tmp/tmpu7x63f_i/job_working_directory/000/1/galaxy_1.sh galaxy.jobs DEBUG 2024-02-23 13:24:56,843 [pN:main.1,p:76310,tN:LocalRunner.work_thread-0] finish(): Moved /tmp/tmpu7x63f_i/job_working_directory/000/1/outputs/dataset_eec98b5f-f9be-4dc5-96b4-503ed9063d81.dat to /tmp/tmpu7x63f_i/files/e/e/c/dataset_eec98b5f-f9be-4dc5-96b4-503ed9063d81.dat galaxy.model.metadata DEBUG 2024-02-23 13:24:56,857 [pN:main.1,p:76310,tN:LocalRunner.work_thread-0] loading metadata from file for: HistoryDatasetAssociation 1 galaxy.jobs DEBUG 2024-02-23 13:24:56,909 [pN:main.1,p:76310,tN:LocalRunner.work_thread-0] job_wrapper.finish for job 1 executed (79.553 ms) galaxy.tools INFO 2024-02-23 13:24:57,214 [pN:main.1,p:76310,tN:WSGI_2] Validated and populated state for tool request (12.825 ms) galaxy.tools.actions INFO 2024-02-23 13:24:57,221 [pN:main.1,p:76310,tN:WSGI_2] Handled output named adaptor_report for tool ncbi_fcs_adaptor (3.467 ms) galaxy.tools.actions INFO 2024-02-23 13:24:57,223 [pN:main.1,p:76310,tN:WSGI_2] Handled output named clean_fasta for tool ncbi_fcs_adaptor (2.550 ms) galaxy.tools.actions INFO 2024-02-23 13:24:57,240 [pN:main.1,p:76310,tN:WSGI_2] Added output datasets to history (16.898 ms) galaxy.tools.actions INFO 2024-02-23 13:24:57,242 [pN:main.1,p:76310,tN:WSGI_2] Setup for job Job[unflushed,tool_id=ncbi_fcs_adaptor] complete, ready to be enqueued (1.769 ms) galaxy.tools.execute DEBUG 2024-02-23 13:24:57,242 [pN:main.1,p:76310,tN:WSGI_2] Tool ncbi_fcs_adaptor created job None (26.970 ms) galaxy.web_stack.handlers INFO 2024-02-23 13:24:57,270 [pN:main.1,p:76310,tN:WSGI_2] (Job[id=2,tool_id=ncbi_fcs_adaptor]) Handler '_default_' assigned using 'HANDLER_ASSIGNMENT_METHODS.DB_SKIP_LOCKED' assignment method galaxy.tools.execute DEBUG 2024-02-23 13:24:57,279 [pN:main.1,p:76310,tN:WSGI_2] Created 1 job(s) for tool ncbi_fcs_adaptor request (64.987 ms) galaxy.jobs.mapper DEBUG 2024-02-23 13:24:58,083 [pN:main.1,p:76310,tN:JobHandlerQueue.monitor_thread] (2) Mapped job to destination id: docker_local galaxy.jobs.handler DEBUG 2024-02-23 13:24:58,085 [pN:main.1,p:76310,tN:JobHandlerQueue.monitor_thread] (2) Dispatching to local runner galaxy.jobs DEBUG 2024-02-23 13:24:58,091 [pN:main.1,p:76310,tN:JobHandlerQueue.monitor_thread] (2) Persisting job destination (destination id: docker_local) galaxy.jobs DEBUG 2024-02-23 13:24:58,096 [pN:main.1,p:76310,tN:JobHandlerQueue.monitor_thread] (2) Working directory for job is: /tmp/tmpu7x63f_i/job_working_directory/000/2 galaxy.jobs.runners DEBUG 2024-02-23 13:24:58,104 [pN:main.1,p:76310,tN:JobHandlerQueue.monitor_thread] Job [2] queued (17.918 ms) galaxy.jobs.handler INFO 2024-02-23 13:24:58,113 [pN:main.1,p:76310,tN:JobHandlerQueue.monitor_thread] (2) Job dispatched galaxy.security.object_wrapper WARNING 2024-02-23 13:24:58,154 [pN:main.1,p:76310,tN:LocalRunner.work_thread-1] Unable to create dynamic subclass SafeStringWrapper__galaxy.model.none_like.None__NoneType__NotImplementedType__Number__SafeStringWrapper__ToolParameterValueWrapper__bool__bytearray__ellipsis for <class 'galaxy.model.none_like.NoneDataset'>, None: type() doesn't support MRO entry resolution; use types.new_class() galaxy.jobs DEBUG 2024-02-23 13:24:58,171 [pN:main.1,p:76310,tN:LocalRunner.work_thread-1] Job wrapper for Job [2] prepared (48.293 ms) galaxy.tool_util.deps.containers INFO 2024-02-23 13:24:58,171 [pN:main.1,p:76310,tN:LocalRunner.work_thread-1] Checking with container resolver [ExplicitContainerResolver[]] found description [ContainerDescription[identifier=ncbi/fcs-adaptor:0.5.0,type=docker]] galaxy.jobs.command_factory INFO 2024-02-23 13:24:58,228 [pN:main.1,p:76310,tN:LocalRunner.work_thread-1] Built script [/tmp/tmpu7x63f_i/job_working_directory/000/2/tool_script.sh] for tool command [/app/fcs/bin/av_screen_x -o "$(pwd)" '--prok' '/tmp/tmpu7x63f_i/files/e/e/c/dataset_eec98b5f-f9be-4dc5-96b4-503ed9063d81.dat'] galaxy.jobs.runners DEBUG 2024-02-23 13:24:58,271 [pN:main.1,p:76310,tN:LocalRunner.work_thread-1] (2) command is: mkdir -p working outputs configs if [ -d _working ]; then rm -rf working/ outputs/ configs/; cp -R _working working; cp -R _outputs outputs; cp -R _configs configs else cp -R working _working; cp -R outputs _outputs; cp -R configs _configs fi cd working; _on_exit() { docker kill f71ddf064bc8471290726ff32293b0f0 &> /dev/null } trap _on_exit EXIT docker inspect ncbi/fcs-adaptor:0.5.0 > /dev/null 2>&1 [ $? -ne 0 ] && docker pull ncbi/fcs-adaptor:0.5.0 > /dev/null 2>&1 docker run -e "GALAXY_SLOTS=$GALAXY_SLOTS" -e "GALAXY_MEMORY_MB=$GALAXY_MEMORY_MB" -e "GALAXY_MEMORY_MB_PER_SLOT=$GALAXY_MEMORY_MB_PER_SLOT" -e "HOME=$HOME" -e "_GALAXY_JOB_HOME_DIR=$_GALAXY_JOB_HOME_DIR" -e "_GALAXY_JOB_TMP_DIR=$_GALAXY_JOB_TMP_DIR" -e "TMPDIR=$TMPDIR" -e "TMP=$TMP" -e "TEMP=$TEMP" --name f71ddf064bc8471290726ff32293b0f0 -v "$_GALAXY_JOB_TMP_DIR:$_GALAXY_JOB_TMP_DIR:rw" -v "$TMPDIR:$TMPDIR:rw" -v "$TMP:$TMP:rw" -v "$TEMP:$TEMP:rw" -v /scratch/rico/galaxy:/scratch/rico/galaxy:ro -v /scratch/rico/galaxytools/tools/ncbi_fcs_adaptor:/scratch/rico/galaxytools/tools/ncbi_fcs_adaptor:ro -v /tmp/tmpu7x63f_i/job_working_directory/000/2:/tmp/tmpu7x63f_i/job_working_directory/000/2:ro -v /tmp/tmpu7x63f_i/job_working_directory/000/2/outputs:/tmp/tmpu7x63f_i/job_working_directory/000/2/outputs:rw -v "$_GALAXY_JOB_HOME_DIR:$_GALAXY_JOB_HOME_DIR:rw" -v /tmp/tmpu7x63f_i/job_working_directory/000/2/working:/tmp/tmpu7x63f_i/job_working_directory/000/2/working:rw -v /tmp/tmpu7x63f_i/files:/tmp/tmpu7x63f_i/files:ro -v /scratch/rico/galaxy/tool-data:/scratch/rico/galaxy/tool-data:ro --cpus ${GALAXY_SLOTS:-1} -w /tmp/tmpu7x63f_i/job_working_directory/000/2/working --rm --user 1028:1028 ncbi/fcs-adaptor:0.5.0 /bin/sh /tmp/tmpu7x63f_i/job_working_directory/000/2/tool_script.sh > '../outputs/tool_stdout' 2> '../outputs/tool_stderr'; return_code=$?; echo $return_code > /tmp/tmpu7x63f_i/job_working_directory/000/2/galaxy_2.ec; if [ -f "/tmp/tmpu7x63f_i/job_working_directory/000/2/working/fcs_adaptor_report.txt" ] ; then cp "/tmp/tmpu7x63f_i/job_working_directory/000/2/working/fcs_adaptor_report.txt" "/tmp/tmpu7x63f_i/job_working_directory/000/2/outputs/dataset_1a2ea823-d7e6-495f-a31e-e8d6621f705c.dat" ; fi; if [ -f "/tmp/tmpu7x63f_i/job_working_directory/000/2/working/cleaned_sequences/"*".dat" ] ; then cp "/tmp/tmpu7x63f_i/job_working_directory/000/2/working/cleaned_sequences/"*".dat" "/tmp/tmpu7x63f_i/job_working_directory/000/2/outputs/dataset_4e39d590-f2e3-4821-87bc-68df5a7106cb.dat" ; fi; cd '/tmp/tmpu7x63f_i/job_working_directory/000/2'; [ "$GALAXY_VIRTUAL_ENV" = "None" ] && GALAXY_VIRTUAL_ENV="$_GALAXY_VIRTUAL_ENV"; _galaxy_setup_environment True; python metadata/set.py; sh -c "exit $return_code" galaxy.jobs.runners.local DEBUG 2024-02-23 13:24:58,294 [pN:main.1,p:76310,tN:LocalRunner.work_thread-1] (2) executing job script: /tmp/tmpu7x63f_i/job_working_directory/000/2/galaxy_2.sh galaxy.jobs.runners.util.process_groups DEBUG 2024-02-23 13:25:49,969 [pN:main.1,p:76310,tN:LocalRunner.work_thread-1] check_pg(): No process found in process group 76490 galaxy.jobs.runners.local DEBUG 2024-02-23 13:25:49,970 [pN:main.1,p:76310,tN:LocalRunner.work_thread-1] execution finished: /tmp/tmpu7x63f_i/job_working_directory/000/2/galaxy_2.sh galaxy.jobs DEBUG 2024-02-23 13:25:49,995 [pN:main.1,p:76310,tN:LocalRunner.work_thread-1] finish(): Moved /tmp/tmpu7x63f_i/job_working_directory/000/2/outputs/dataset_1a2ea823-d7e6-495f-a31e-e8d6621f705c.dat to /tmp/tmpu7x63f_i/files/1/a/2/dataset_1a2ea823-d7e6-495f-a31e-e8d6621f705c.dat galaxy.jobs DEBUG 2024-02-23 13:25:49,995 [pN:main.1,p:76310,tN:LocalRunner.work_thread-1] finish(): Moved /tmp/tmpu7x63f_i/job_working_directory/000/2/outputs/dataset_4e39d590-f2e3-4821-87bc-68df5a7106cb.dat to /tmp/tmpu7x63f_i/files/4/e/3/dataset_4e39d590-f2e3-4821-87bc-68df5a7106cb.dat galaxy.model.metadata DEBUG 2024-02-23 13:25:50,004 [pN:main.1,p:76310,tN:LocalRunner.work_thread-1] loading metadata from file for: HistoryDatasetAssociation 2 galaxy.model.metadata DEBUG 2024-02-23 13:25:50,011 [pN:main.1,p:76310,tN:LocalRunner.work_thread-1] loading metadata from file for: HistoryDatasetAssociation 3 galaxy.jobs DEBUG 2024-02-23 13:25:50,081 [pN:main.1,p:76310,tN:LocalRunner.work_thread-1] job_wrapper.finish for job 2 executed (91.685 ms) multipart.multipart DEBUG 2024-02-23 13:25:50,805 [pN:main.1,p:76310,tN:MainThread] Calling on_field_start with no data multipart.multipart DEBUG 2024-02-23 13:25:50,805 [pN:main.1,p:76310,tN:MainThread] Calling on_field_name with data[0:4] multipart.multipart DEBUG 2024-02-23 13:25:50,805 [pN:main.1,p:76310,tN:MainThread] Calling on_field_data with data[5:63] multipart.multipart DEBUG 2024-02-23 13:25:50,805 [pN:main.1,p:76310,tN:MainThread] Calling on_field_end with no data multipart.multipart DEBUG 2024-02-23 13:25:50,805 [pN:main.1,p:76310,tN:MainThread] Calling on_end with no data galaxy.tools INFO 2024-02-23 13:25:50,949 [pN:main.1,p:76310,tN:WSGI_8] Validated and populated state for tool request (7.807 ms) galaxy.tools.actions.upload DEBUG 2024-02-23 13:25:50,953 [pN:main.1,p:76310,tN:WSGI_8] Persisted uploads (0.127 ms) galaxy.tools.actions.upload DEBUG 2024-02-23 13:25:50,994 [pN:main.1,p:76310,tN:WSGI_8] Checked uploads (41.512 ms) galaxy.tools.actions.upload DEBUG 2024-02-23 13:25:50,996 [pN:main.1,p:76310,tN:WSGI_8] Created upload job (2.119 ms) galaxy.tools.execute DEBUG 2024-02-23 13:25:50,997 [pN:main.1,p:76310,tN:WSGI_8] Tool upload1 created job None (44.285 ms) galaxy.web_stack.handlers INFO 2024-02-23 13:25:51,010 [pN:main.1,p:76310,tN:WSGI_8] (Job[id=3,tool_id=upload1]) Handler '_default_' assigned using 'HANDLER_ASSIGNMENT_METHODS.DB_SKIP_LOCKED' assignment method galaxy.tools.execute DEBUG 2024-02-23 13:25:51,014 [pN:main.1,p:76310,tN:WSGI_8] Created 1 job(s) for tool upload1 request (64.682 ms) galaxy.jobs.mapper DEBUG 2024-02-23 13:25:51,360 [pN:main.1,p:76310,tN:JobHandlerQueue.monitor_thread] (3) Mapped job to destination id: docker_local galaxy.jobs.handler DEBUG 2024-02-23 13:25:51,366 [pN:main.1,p:76310,tN:JobHandlerQueue.monitor_thread] (3) Dispatching to local runner galaxy.jobs DEBUG 2024-02-23 13:25:51,383 [pN:main.1,p:76310,tN:JobHandlerQueue.monitor_thread] (3) Persisting job destination (destination id: docker_local) galaxy.jobs DEBUG 2024-02-23 13:25:51,393 [pN:main.1,p:76310,tN:JobHandlerQueue.monitor_thread] (3) Working directory for job is: /tmp/tmpu7x63f_i/job_working_directory/000/3 galaxy.jobs.runners DEBUG 2024-02-23 13:25:51,399 [pN:main.1,p:76310,tN:JobHandlerQueue.monitor_thread] Job [3] queued (32.821 ms) galaxy.jobs.handler INFO 2024-02-23 13:25:51,420 [pN:main.1,p:76310,tN:JobHandlerQueue.monitor_thread] (3) Job dispatched galaxy.jobs DEBUG 2024-02-23 13:25:51,459 [pN:main.1,p:76310,tN:LocalRunner.work_thread-3] Job wrapper for Job [3] prepared (38.864 ms) galaxy.tool_util.deps.containers INFO 2024-02-23 13:25:51,460 [pN:main.1,p:76310,tN:LocalRunner.work_thread-3] Checking with container resolver [ExplicitContainerResolver[]] found description [None] galaxy.tool_util.deps.containers INFO 2024-02-23 13:25:51,460 [pN:main.1,p:76310,tN:LocalRunner.work_thread-3] Checking with container resolver [CachedMulledDockerContainerResolver[namespace=biocontainers]] found description [None] galaxy.tool_util.deps.containers INFO 2024-02-23 13:25:51,460 [pN:main.1,p:76310,tN:LocalRunner.work_thread-3] Checking with container resolver [CachedMulledDockerContainerResolver[namespace=local]] found description [None] galaxy.tool_util.deps.containers INFO 2024-02-23 13:25:51,460 [pN:main.1,p:76310,tN:LocalRunner.work_thread-3] Checking with container resolver [MulledDockerContainerResolver[namespace=biocontainers]] found description [None] galaxy.tool_util.deps.containers INFO 2024-02-23 13:25:51,460 [pN:main.1,p:76310,tN:LocalRunner.work_thread-3] Checking with container resolver [BuildDockerContainerResolver[namespace=local]] found description [None] galaxy.jobs.command_factory INFO 2024-02-23 13:25:51,486 [pN:main.1,p:76310,tN:LocalRunner.work_thread-3] Built script [/tmp/tmpu7x63f_i/job_working_directory/000/3/tool_script.sh] for tool command [python '/scratch/rico/galaxy/tools/data_source/upload.py' '/scratch/rico/galaxy' '/tmp/tmpu7x63f_i/job_working_directory/000/3/registry.xml' '/tmp/tmpu7x63f_i/job_working_directory/000/3/upload_params.json' '4:/tmp/tmpu7x63f_i/job_working_directory/000/3/outputs/dataset_96bb2ac5-08a0-48d7-9de5-79affb15526d_files:/tmp/tmpu7x63f_i/job_working_directory/000/3/outputs/dataset_96bb2ac5-08a0-48d7-9de5-79affb15526d.dat'] galaxy.jobs.runners DEBUG 2024-02-23 13:25:51,512 [pN:main.1,p:76310,tN:LocalRunner.work_thread-3] (3) command is: mkdir -p working outputs configs if [ -d _working ]; then rm -rf working/ outputs/ configs/; cp -R _working working; cp -R _outputs outputs; cp -R _configs configs else cp -R working _working; cp -R outputs _outputs; cp -R configs _configs fi cd working; /bin/bash /tmp/tmpu7x63f_i/job_working_directory/000/3/tool_script.sh > '../outputs/tool_stdout' 2> '../outputs/tool_stderr'; return_code=$?; echo $return_code > /tmp/tmpu7x63f_i/job_working_directory/000/3/galaxy_3.ec; cd '/tmp/tmpu7x63f_i/job_working_directory/000/3'; [ "$GALAXY_VIRTUAL_ENV" = "None" ] && GALAXY_VIRTUAL_ENV="$_GALAXY_VIRTUAL_ENV"; _galaxy_setup_environment True; python metadata/set.py; sh -c "exit $return_code" galaxy.jobs.runners.local DEBUG 2024-02-23 13:25:51,533 [pN:main.1,p:76310,tN:LocalRunner.work_thread-3] (3) executing job script: /tmp/tmpu7x63f_i/job_working_directory/000/3/galaxy_3.sh galaxy.jobs.runners.util.process_groups DEBUG 2024-02-23 13:25:57,636 [pN:main.1,p:76310,tN:LocalRunner.work_thread-3] check_pg(): No process found in process group 76848 galaxy.jobs.runners.local DEBUG 2024-02-23 13:25:57,638 [pN:main.1,p:76310,tN:LocalRunner.work_thread-3] execution finished: /tmp/tmpu7x63f_i/job_working_directory/000/3/galaxy_3.sh galaxy.jobs DEBUG 2024-02-23 13:25:57,660 [pN:main.1,p:76310,tN:LocalRunner.work_thread-3] finish(): Moved /tmp/tmpu7x63f_i/job_working_directory/000/3/outputs/dataset_96bb2ac5-08a0-48d7-9de5-79affb15526d.dat to /tmp/tmpu7x63f_i/files/9/6/b/dataset_96bb2ac5-08a0-48d7-9de5-79affb15526d.dat galaxy.model.metadata DEBUG 2024-02-23 13:25:57,668 [pN:main.1,p:76310,tN:LocalRunner.work_thread-3] loading metadata from file for: HistoryDatasetAssociation 4 galaxy.jobs DEBUG 2024-02-23 13:25:57,695 [pN:main.1,p:76310,tN:LocalRunner.work_thread-3] job_wrapper.finish for job 3 executed (41.217 ms) galaxy.tools INFO 2024-02-23 13:25:57,927 [pN:main.1,p:76310,tN:WSGI_5] Validated and populated state for tool request (4.567 ms) galaxy.tools.actions INFO 2024-02-23 13:25:57,932 [pN:main.1,p:76310,tN:WSGI_5] Handled output named adaptor_report for tool ncbi_fcs_adaptor (1.226 ms) galaxy.tools.actions INFO 2024-02-23 13:25:57,933 [pN:main.1,p:76310,tN:WSGI_5] Handled output named clean_fasta for tool ncbi_fcs_adaptor (0.730 ms) galaxy.tools.actions DEBUG 2024-02-23 13:25:57,933 [pN:main.1,p:76310,tN:WSGI_5] Tool ncbi_fcs_adaptor output adaptor_log: dataset output filter (advanced['optional_log'] is not None and 'adaptor_log' in advanced['optional_log'].split(',')) failed: 'list' object has no attribute 'split' galaxy.tools.actions INFO 2024-02-23 13:25:57,936 [pN:main.1,p:76310,tN:WSGI_5] Handled output named adaptor_log for tool ncbi_fcs_adaptor (3.053 ms) galaxy.tools.actions DEBUG 2024-02-23 13:25:57,936 [pN:main.1,p:76310,tN:WSGI_5] Tool ncbi_fcs_adaptor output validate_fasta_log: dataset output filter (advanced['optional_log'] is not None and 'validate_fasta_log' in advanced['optional_log'].split(',')) failed: 'list' object has no attribute 'split' galaxy.tools.actions INFO 2024-02-23 13:25:57,939 [pN:main.1,p:76310,tN:WSGI_5] Handled output named validate_fasta_log for tool ncbi_fcs_adaptor (2.494 ms) galaxy.tools.actions INFO 2024-02-23 13:25:57,947 [pN:main.1,p:76310,tN:WSGI_5] Added output datasets to history (7.846 ms) galaxy.tools.actions INFO 2024-02-23 13:25:57,950 [pN:main.1,p:76310,tN:WSGI_5] Setup for job Job[unflushed,tool_id=ncbi_fcs_adaptor] complete, ready to be enqueued (2.292 ms) galaxy.tools.execute DEBUG 2024-02-23 13:25:57,950 [pN:main.1,p:76310,tN:WSGI_5] Tool ncbi_fcs_adaptor created job None (20.728 ms) galaxy.web_stack.handlers INFO 2024-02-23 13:25:57,971 [pN:main.1,p:76310,tN:WSGI_5] (Job[id=4,tool_id=ncbi_fcs_adaptor]) Handler '_default_' assigned using 'HANDLER_ASSIGNMENT_METHODS.DB_SKIP_LOCKED' assignment method galaxy.tools.execute DEBUG 2024-02-23 13:25:57,975 [pN:main.1,p:76310,tN:WSGI_5] Created 1 job(s) for tool ncbi_fcs_adaptor request (47.336 ms) galaxy.jobs.mapper DEBUG 2024-02-23 13:25:58,624 [pN:main.1,p:76310,tN:JobHandlerQueue.monitor_thread] (4) Mapped job to destination id: docker_local galaxy.jobs.handler DEBUG 2024-02-23 13:25:58,630 [pN:main.1,p:76310,tN:JobHandlerQueue.monitor_thread] (4) Dispatching to local runner galaxy.jobs DEBUG 2024-02-23 13:25:58,647 [pN:main.1,p:76310,tN:JobHandlerQueue.monitor_thread] (4) Persisting job destination (destination id: docker_local) galaxy.jobs DEBUG 2024-02-23 13:25:58,659 [pN:main.1,p:76310,tN:JobHandlerQueue.monitor_thread] (4) Working directory for job is: /tmp/tmpu7x63f_i/job_working_directory/000/4 galaxy.jobs.runners DEBUG 2024-02-23 13:25:58,666 [pN:main.1,p:76310,tN:JobHandlerQueue.monitor_thread] Job [4] queued (36.198 ms) galaxy.jobs.handler INFO 2024-02-23 13:25:58,679 [pN:main.1,p:76310,tN:JobHandlerQueue.monitor_thread] (4) Job dispatched galaxy.jobs DEBUG 2024-02-23 13:25:58,748 [pN:main.1,p:76310,tN:LocalRunner.work_thread-3] Job wrapper for Job [4] prepared (53.521 ms) galaxy.tool_util.deps.containers INFO 2024-02-23 13:25:58,749 [pN:main.1,p:76310,tN:LocalRunner.work_thread-3] Checking with container resolver [ExplicitContainerResolver[]] found description [ContainerDescription[identifier=ncbi/fcs-adaptor:0.5.0,type=docker]] galaxy.jobs.command_factory INFO 2024-02-23 13:25:58,784 [pN:main.1,p:76310,tN:LocalRunner.work_thread-3] Built script [/tmp/tmpu7x63f_i/job_working_directory/000/4/tool_script.sh] for tool command [/app/fcs/bin/av_screen_x -o "$(pwd)" '--prok' '/tmp/tmpu7x63f_i/files/9/6/b/dataset_96bb2ac5-08a0-48d7-9de5-79affb15526d.dat'] galaxy.jobs.runners DEBUG 2024-02-23 13:25:58,828 [pN:main.1,p:76310,tN:LocalRunner.work_thread-3] (4) command is: mkdir -p working outputs configs if [ -d _working ]; then rm -rf working/ outputs/ configs/; cp -R _working working; cp -R _outputs outputs; cp -R _configs configs else cp -R working _working; cp -R outputs _outputs; cp -R configs _configs fi cd working; _on_exit() { docker kill 44f5466e5ac0453c8dfe234c278e5cf8 &> /dev/null } trap _on_exit EXIT docker inspect ncbi/fcs-adaptor:0.5.0 > /dev/null 2>&1 [ $? -ne 0 ] && docker pull ncbi/fcs-adaptor:0.5.0 > /dev/null 2>&1 docker run -e "GALAXY_SLOTS=$GALAXY_SLOTS" -e "GALAXY_MEMORY_MB=$GALAXY_MEMORY_MB" -e "GALAXY_MEMORY_MB_PER_SLOT=$GALAXY_MEMORY_MB_PER_SLOT" -e "HOME=$HOME" -e "_GALAXY_JOB_HOME_DIR=$_GALAXY_JOB_HOME_DIR" -e "_GALAXY_JOB_TMP_DIR=$_GALAXY_JOB_TMP_DIR" -e "TMPDIR=$TMPDIR" -e "TMP=$TMP" -e "TEMP=$TEMP" --name 44f5466e5ac0453c8dfe234c278e5cf8 -v "$_GALAXY_JOB_TMP_DIR:$_GALAXY_JOB_TMP_DIR:rw" -v "$TMPDIR:$TMPDIR:rw" -v "$TMP:$TMP:rw" -v "$TEMP:$TEMP:rw" -v /scratch/rico/galaxy:/scratch/rico/galaxy:ro -v /scratch/rico/galaxytools/tools/ncbi_fcs_adaptor:/scratch/rico/galaxytools/tools/ncbi_fcs_adaptor:ro -v /tmp/tmpu7x63f_i/job_working_directory/000/4:/tmp/tmpu7x63f_i/job_working_directory/000/4:ro -v /tmp/tmpu7x63f_i/job_working_directory/000/4/outputs:/tmp/tmpu7x63f_i/job_working_directory/000/4/outputs:rw -v "$_GALAXY_JOB_HOME_DIR:$_GALAXY_JOB_HOME_DIR:rw" -v /tmp/tmpu7x63f_i/job_working_directory/000/4/working:/tmp/tmpu7x63f_i/job_working_directory/000/4/working:rw -v /tmp/tmpu7x63f_i/files:/tmp/tmpu7x63f_i/files:ro -v /scratch/rico/galaxy/tool-data:/scratch/rico/galaxy/tool-data:ro --cpus ${GALAXY_SLOTS:-1} -w /tmp/tmpu7x63f_i/job_working_directory/000/4/working --rm --user 1028:1028 ncbi/fcs-adaptor:0.5.0 /bin/sh /tmp/tmpu7x63f_i/job_working_directory/000/4/tool_script.sh > '../outputs/tool_stdout' 2> '../outputs/tool_stderr'; return_code=$?; echo $return_code > /tmp/tmpu7x63f_i/job_working_directory/000/4/galaxy_4.ec; if [ -f "/tmp/tmpu7x63f_i/job_working_directory/000/4/working/fcs_adaptor_report.txt" ] ; then cp "/tmp/tmpu7x63f_i/job_working_directory/000/4/working/fcs_adaptor_report.txt" "/tmp/tmpu7x63f_i/job_working_directory/000/4/outputs/dataset_5bd87a72-fbff-4e4a-a27a-aa9a07b645ae.dat" ; fi; if [ -f "/tmp/tmpu7x63f_i/job_working_directory/000/4/working/cleaned_sequences/"*".dat" ] ; then cp "/tmp/tmpu7x63f_i/job_working_directory/000/4/working/cleaned_sequences/"*".dat" "/tmp/tmpu7x63f_i/job_working_directory/000/4/outputs/dataset_2556b660-7d40-4c96-ae9b-4e54b5c33132.dat" ; fi; if [ -f "/tmp/tmpu7x63f_i/job_working_directory/000/4/working/fcs_adaptor.log" ] ; then cp "/tmp/tmpu7x63f_i/job_working_directory/000/4/working/fcs_adaptor.log" "/tmp/tmpu7x63f_i/job_working_directory/000/4/outputs/dataset_8294ec1f-feb6-4427-822b-0d653c89d82d.dat" ; fi; if [ -f "/tmp/tmpu7x63f_i/job_working_directory/000/4/working/validate_fasta.txt" ] ; then cp "/tmp/tmpu7x63f_i/job_working_directory/000/4/working/validate_fasta.txt" "/tmp/tmpu7x63f_i/job_working_directory/000/4/outputs/dataset_664ec871-210e-4cf1-867e-c67d8419c064.dat" ; fi; cd '/tmp/tmpu7x63f_i/job_working_directory/000/4'; [ "$GALAXY_VIRTUAL_ENV" = "None" ] && GALAXY_VIRTUAL_ENV="$_GALAXY_VIRTUAL_ENV"; _galaxy_setup_environment True; python metadata/set.py; sh -c "exit $return_code" galaxy.jobs.runners.local DEBUG 2024-02-23 13:25:58,850 [pN:main.1,p:76310,tN:LocalRunner.work_thread-3] (4) executing job script: /tmp/tmpu7x63f_i/job_working_directory/000/4/galaxy_4.sh galaxy.jobs.runners.util.process_groups DEBUG 2024-02-23 13:26:49,072 [pN:main.1,p:76310,tN:LocalRunner.work_thread-3] check_pg(): No process found in process group 77003 galaxy.jobs.runners.local DEBUG 2024-02-23 13:26:49,073 [pN:main.1,p:76310,tN:LocalRunner.work_thread-3] execution finished: /tmp/tmpu7x63f_i/job_working_directory/000/4/galaxy_4.sh galaxy.jobs DEBUG 2024-02-23 13:26:49,095 [pN:main.1,p:76310,tN:LocalRunner.work_thread-3] finish(): Moved /tmp/tmpu7x63f_i/job_working_directory/000/4/outputs/dataset_5bd87a72-fbff-4e4a-a27a-aa9a07b645ae.dat to /tmp/tmpu7x63f_i/files/5/b/d/dataset_5bd87a72-fbff-4e4a-a27a-aa9a07b645ae.dat galaxy.jobs DEBUG 2024-02-23 13:26:49,096 [pN:main.1,p:76310,tN:LocalRunner.work_thread-3] finish(): Moved /tmp/tmpu7x63f_i/job_working_directory/000/4/outputs/dataset_2556b660-7d40-4c96-ae9b-4e54b5c33132.dat to /tmp/tmpu7x63f_i/files/2/5/5/dataset_2556b660-7d40-4c96-ae9b-4e54b5c33132.dat galaxy.jobs DEBUG 2024-02-23 13:26:49,096 [pN:main.1,p:76310,tN:LocalRunner.work_thread-3] finish(): Moved /tmp/tmpu7x63f_i/job_working_directory/000/4/outputs/dataset_8294ec1f-feb6-4427-822b-0d653c89d82d.dat to /tmp/tmpu7x63f_i/files/8/2/9/dataset_8294ec1f-feb6-4427-822b-0d653c89d82d.dat galaxy.jobs DEBUG 2024-02-23 13:26:49,096 [pN:main.1,p:76310,tN:LocalRunner.work_thread-3] finish(): Moved /tmp/tmpu7x63f_i/job_working_directory/000/4/outputs/dataset_664ec871-210e-4cf1-867e-c67d8419c064.dat to /tmp/tmpu7x63f_i/files/6/6/4/dataset_664ec871-210e-4cf1-867e-c67d8419c064.dat galaxy.model.metadata DEBUG 2024-02-23 13:26:49,104 [pN:main.1,p:76310,tN:LocalRunner.work_thread-3] loading metadata from file for: HistoryDatasetAssociation 5 galaxy.model.metadata DEBUG 2024-02-23 13:26:49,108 [pN:main.1,p:76310,tN:LocalRunner.work_thread-3] loading metadata from file for: HistoryDatasetAssociation 6 galaxy.model.metadata DEBUG 2024-02-23 13:26:49,111 [pN:main.1,p:76310,tN:LocalRunner.work_thread-3] loading metadata from file for: HistoryDatasetAssociation 7 galaxy.model.metadata DEBUG 2024-02-23 13:26:49,136 [pN:main.1,p:76310,tN:LocalRunner.work_thread-3] loading metadata from file for: HistoryDatasetAssociation 8 galaxy.jobs DEBUG 2024-02-23 13:26:49,199 [pN:main.1,p:76310,tN:LocalRunner.work_thread-3] job_wrapper.finish for job 4 executed (108.579 ms) ps ax PID TTY STAT TIME COMMAND 1 ? Ss 0:12 /sbin/init 2 ? S 0:02 [kthreadd] 3 ? I< 0:00 [rcu_gp] 4 ? I< 0:00 [rcu_par_gp] 6 ? I< 0:00 [kworker/0:0H] 8 ? I 2:16 [kworker/u224:0-ixgbe] 9 ? I< 0:00 [mm_percpu_wq] 10 ? S 0:05 [ksoftirqd/0] 11 ? I 4:21 [rcu_sched] 12 ? I 0:00 [rcu_bh] 13 ? S 0:01 [migration/0] 15 ? S 0:00 [cpuhp/0] 16 ? S 0:00 [cpuhp/1] 17 ? S 0:21 [migration/1] 18 ? S 0:00 [ksoftirqd/1] 20 ? I< 0:00 [kworker/1:0H-kblockd] 21 ? S 0:00 [cpuhp/2] 22 ? S 0:21 [migration/2] 23 ? S 0:00 [ksoftirqd/2] 25 ? I< 0:00 [kworker/2:0H-kblockd] 26 ? S 0:00 [cpuhp/3] 27 ? S 0:21 [migration/3] 28 ? S 0:00 [ksoftirqd/3] 30 ? I< 0:00 [kworker/3:0H-kblockd] 31 ? S 0:00 [cpuhp/4] 32 ? S 0:21 [migration/4] 33 ? S 0:00 [ksoftirqd/4] 35 ? I< 0:00 [kworker/4:0H-kblockd] 36 ? S 0:00 [cpuhp/5] 37 ? S 0:21 [migration/5] 38 ? S 0:00 [ksoftirqd/5] 40 ? I< 0:00 [kworker/5:0H-kblockd] 41 ? S 0:00 [cpuhp/6] 42 ? S 0:21 [migration/6] 43 ? S 0:00 [ksoftirqd/6] 45 ? I< 0:00 [kworker/6:0H-kblockd] 46 ? S 0:00 [cpuhp/7] 47 ? S 0:21 [migration/7] 48 ? S 0:00 [ksoftirqd/7] 50 ? I< 0:00 [kworker/7:0H] 51 ? S 0:00 [cpuhp/8] 52 ? S 0:21 [migration/8] 53 ? S 0:00 [ksoftirqd/8] 55 ? I< 0:00 [kworker/8:0H-kblockd] 56 ? S 0:00 [cpuhp/9] 57 ? S 0:21 [migration/9] 58 ? S 0:00 [ksoftirqd/9] 60 ? I< 0:00 [kworker/9:0H-kblockd] 61 ? S 0:00 [cpuhp/10] 62 ? S 0:21 [migration/10] 63 ? S 0:03 [ksoftirqd/10] 65 ? I< 0:00 [kworker/10:0H-kblockd] 66 ? S 0:00 [cpuhp/11] 67 ? S 0:21 [migration/11] 68 ? S 0:00 [ksoftirqd/11] 70 ? I< 0:00 [kworker/11:0H-kblockd] 71 ? S 0:00 [cpuhp/12] 72 ? S 0:21 [migration/12] 73 ? S 0:00 [ksoftirqd/12] 75 ? I< 0:00 [kworker/12:0H-kblockd] 76 ? S 0:00 [cpuhp/13] 77 ? S 0:21 [migration/13] 78 ? S 0:00 [ksoftirqd/13] 80 ? I< 0:00 [kworker/13:0H-kblockd] 81 ? S 0:00 [cpuhp/14] 82 ? S 0:21 [migration/14] 83 ? S 0:00 [ksoftirqd/14] 85 ? I< 0:00 [kworker/14:0H-kblockd] 86 ? S 0:00 [cpuhp/15] 87 ? S 0:21 [migration/15] 88 ? S 0:00 [ksoftirqd/15] 90 ? I< 0:00 [kworker/15:0H-kblockd] 91 ? S 0:00 [cpuhp/16] 92 ? S 0:21 [migration/16] 93 ? S 0:00 [ksoftirqd/16] 95 ? I< 0:00 [kworker/16:0H-kblockd] 96 ? S 0:00 [cpuhp/17] 97 ? S 0:21 [migration/17] 98 ? S 0:00 [ksoftirqd/17] 100 ? I< 0:00 [kworker/17:0H-kblockd] 101 ? S 0:00 [cpuhp/18] 102 ? S 0:21 [migration/18] 103 ? S 0:00 [ksoftirqd/18] 105 ? I< 0:00 [kworker/18:0H-kblockd] 106 ? S 0:00 [cpuhp/19] 107 ? S 0:21 [migration/19] 108 ? S 0:00 [ksoftirqd/19] 110 ? I< 0:00 [kworker/19:0H-kblockd] 111 ? S 0:00 [cpuhp/20] 112 ? S 0:21 [migration/20] 113 ? S 0:00 [ksoftirqd/20] 115 ? I< 0:00 [kworker/20:0H-kblockd] 116 ? S 0:00 [cpuhp/21] 117 ? S 0:21 [migration/21] 118 ? S 0:00 [ksoftirqd/21] 120 ? I< 0:00 [kworker/21:0H-kblockd] 121 ? S 0:00 [cpuhp/22] 122 ? S 0:21 [migration/22] 123 ? S 0:00 [ksoftirqd/22] 125 ? I< 0:00 [kworker/22:0H-kblockd] 126 ? S 0:00 [cpuhp/23] 127 ? S 0:21 [migration/23] 128 ? S 0:00 [ksoftirqd/23] 130 ? I< 0:00 [kworker/23:0H-kblockd] 131 ? S 0:00 [cpuhp/24] 132 ? S 0:21 [migration/24] 133 ? S 0:00 [ksoftirqd/24] 135 ? I< 0:00 [kworker/24:0H-kblockd] 136 ? S 0:00 [cpuhp/25] 137 ? S 0:21 [migration/25] 138 ? S 0:00 [ksoftirqd/25] 140 ? I< 0:00 [kworker/25:0H-kblockd] 141 ? S 0:00 [cpuhp/26] 142 ? S 0:21 [migration/26] 143 ? S 0:00 [ksoftirqd/26] 145 ? I< 0:00 [kworker/26:0H-kblockd] 146 ? S 0:00 [cpuhp/27] 147 ? S 0:21 [migration/27] 148 ? S 0:00 [ksoftirqd/27] 150 ? I< 0:00 [kworker/27:0H-kblockd] 151 ? S 0:00 [cpuhp/28] 152 ? S 0:21 [migration/28] 153 ? S 0:00 [ksoftirqd/28] 155 ? I< 0:00 [kworker/28:0H-kblockd] 157 ? S 0:00 [cpuhp/29] 158 ? S 0:21 [migration/29] 159 ? S 0:00 [ksoftirqd/29] 161 ? I< 0:00 [kworker/29:0H] 162 ? S 0:00 [cpuhp/30] 163 ? S 0:21 [migration/30] 164 ? S 0:00 [ksoftirqd/30] 166 ? I< 0:00 [kworker/30:0H-kblockd] 167 ? S 0:00 [cpuhp/31] 168 ? S 0:21 [migration/31] 169 ? S 0:00 [ksoftirqd/31] 171 ? I< 0:00 [kworker/31:0H-kblockd] 172 ? S 0:00 [cpuhp/32] 173 ? S 0:21 [migration/32] 174 ? S 0:00 [ksoftirqd/32] 176 ? I< 0:00 [kworker/32:0H-kblockd] 177 ? S 0:00 [cpuhp/33] 178 ? S 0:21 [migration/33] 179 ? S 0:00 [ksoftirqd/33] 181 ? I< 0:00 [kworker/33:0H-kblockd] 182 ? S 0:00 [cpuhp/34] 183 ? S 0:21 [migration/34] 184 ? S 0:00 [ksoftirqd/34] 186 ? I< 0:00 [kworker/34:0H-kblockd] 187 ? S 0:00 [cpuhp/35] 188 ? S 0:21 [migration/35] 189 ? S 0:00 [ksoftirqd/35] 191 ? I< 0:00 [kworker/35:0H-kblockd] 192 ? S 0:00 [cpuhp/36] 193 ? S 0:21 [migration/36] 194 ? S 0:00 [ksoftirqd/36] 196 ? I< 0:00 [kworker/36:0H] 197 ? S 0:00 [cpuhp/37] 198 ? S 0:21 [migration/37] 199 ? S 0:00 [ksoftirqd/37] 201 ? I< 0:00 [kworker/37:0H] 202 ? S 0:00 [cpuhp/38] 203 ? S 0:21 [migration/38] 204 ? S 0:00 [ksoftirqd/38] 206 ? I< 0:00 [kworker/38:0H] 207 ? S 0:00 [cpuhp/39] 208 ? S 0:21 [migration/39] 209 ? S 0:00 [ksoftirqd/39] 211 ? I< 0:00 [kworker/39:0H] 212 ? S 0:00 [cpuhp/40] 213 ? S 0:21 [migration/40] 214 ? S 0:00 [ksoftirqd/40] 216 ? I< 0:00 [kworker/40:0H-kblockd] 217 ? S 0:00 [cpuhp/41] 218 ? S 0:21 [migration/41] 219 ? S 0:00 [ksoftirqd/41] 221 ? I< 0:00 [kworker/41:0H-kblockd] 222 ? S 0:00 [cpuhp/42] 223 ? S 0:21 [migration/42] 224 ? S 0:00 [ksoftirqd/42] 226 ? I< 0:00 [kworker/42:0H-kblockd] 227 ? S 0:00 [cpuhp/43] 228 ? S 0:21 [migration/43] 229 ? S 0:00 [ksoftirqd/43] 231 ? I< 0:00 [kworker/43:0H-kblockd] 232 ? S 0:00 [cpuhp/44] 233 ? S 0:21 [migration/44] 234 ? S 0:00 [ksoftirqd/44] 236 ? I< 0:00 [kworker/44:0H] 237 ? S 0:00 [cpuhp/45] 238 ? S 0:21 [migration/45] 239 ? S 0:00 [ksoftirqd/45] 241 ? I< 0:00 [kworker/45:0H-kblockd] 242 ? S 0:00 [cpuhp/46] 243 ? S 0:21 [migration/46] 244 ? S 0:00 [ksoftirqd/46] 246 ? I< 0:00 [kworker/46:0H-kblockd] 247 ? S 0:00 [cpuhp/47] 248 ? S 0:21 [migration/47] 249 ? S 0:00 [ksoftirqd/47] 251 ? I< 0:00 [kworker/47:0H-kblockd] 252 ? S 0:00 [cpuhp/48] 253 ? S 0:21 [migration/48] 254 ? S 0:00 [ksoftirqd/48] 256 ? I< 0:00 [kworker/48:0H-kblockd] 257 ? S 0:00 [cpuhp/49] 258 ? S 0:21 [migration/49] 259 ? S 0:00 [ksoftirqd/49] 261 ? I< 0:00 [kworker/49:0H-kblockd] 262 ? S 0:00 [cpuhp/50] 263 ? S 0:21 [migration/50] 264 ? S 0:00 [ksoftirqd/50] 266 ? I< 0:00 [kworker/50:0H] 267 ? S 0:00 [cpuhp/51] 268 ? S 0:21 [migration/51] 269 ? S 0:00 [ksoftirqd/51] 271 ? I< 0:00 [kworker/51:0H] 272 ? S 0:00 [cpuhp/52] 273 ? S 0:21 [migration/52] 274 ? S 0:00 [ksoftirqd/52] 276 ? I< 0:00 [kworker/52:0H-kblockd] 277 ? S 0:00 [cpuhp/53] 278 ? S 0:21 [migration/53] 279 ? S 0:00 [ksoftirqd/53] 281 ? I< 0:00 [kworker/53:0H-kblockd] 282 ? S 0:00 [cpuhp/54] 283 ? S 0:21 [migration/54] 284 ? S 0:00 [ksoftirqd/54] 286 ? I< 0:00 [kworker/54:0H-kblockd] 287 ? S 0:00 [cpuhp/55] 288 ? S 0:22 [migration/55] 289 ? S 0:00 [ksoftirqd/55] 291 ? I< 0:00 [kworker/55:0H-kblockd] 292 ? S 0:00 [cpuhp/56] 293 ? S 0:22 [migration/56] 294 ? S 0:00 [ksoftirqd/56] 296 ? I< 0:00 [kworker/56:0H-kblockd] 297 ? S 0:00 [cpuhp/57] 298 ? S 0:22 [migration/57] 299 ? S 0:00 [ksoftirqd/57] 301 ? I< 0:00 [kworker/57:0H-kblockd] 302 ? S 0:00 [cpuhp/58] 303 ? S 0:22 [migration/58] 304 ? S 0:00 [ksoftirqd/58] 306 ? I< 0:00 [kworker/58:0H-kblockd] 307 ? S 0:00 [cpuhp/59] 308 ? S 0:22 [migration/59] 309 ? S 0:00 [ksoftirqd/59] 311 ? I< 0:00 [kworker/59:0H-kblockd] 312 ? S 0:00 [cpuhp/60] 313 ? S 0:22 [migration/60] 314 ? S 0:00 [ksoftirqd/60] 316 ? I< 0:00 [kworker/60:0H-kblockd] 317 ? S 0:00 [cpuhp/61] 318 ? S 0:22 [migration/61] 319 ? S 0:00 [ksoftirqd/61] 321 ? I< 0:00 [kworker/61:0H-kblockd] 322 ? S 0:00 [cpuhp/62] 323 ? S 0:22 [migration/62] 324 ? S 0:00 [ksoftirqd/62] 326 ? I< 0:00 [kworker/62:0H-kblockd] 327 ? S 0:00 [cpuhp/63] 328 ? S 0:22 [migration/63] 329 ? S 0:00 [ksoftirqd/63] 331 ? I< 0:00 [kworker/63:0H-kblockd] 332 ? S 0:00 [cpuhp/64] 333 ? S 0:22 [migration/64] 334 ? S 0:00 [ksoftirqd/64] 336 ? I< 0:00 [kworker/64:0H-kblockd] 337 ? S 0:00 [cpuhp/65] 338 ? S 0:22 [migration/65] 339 ? S 0:00 [ksoftirqd/65] 341 ? I< 0:00 [kworker/65:0H] 342 ? S 0:00 [cpuhp/66] 343 ? S 0:22 [migration/66] 344 ? S 0:00 [ksoftirqd/66] 346 ? I< 0:00 [kworker/66:0H-kblockd] 347 ? S 0:00 [cpuhp/67] 348 ? S 0:22 [migration/67] 349 ? S 0:00 [ksoftirqd/67] 351 ? I< 0:00 [kworker/67:0H-kblockd] 352 ? S 0:00 [cpuhp/68] 353 ? S 0:22 [migration/68] 354 ? S 0:00 [ksoftirqd/68] 356 ? I< 0:00 [kworker/68:0H-kblockd] 357 ? S 0:00 [cpuhp/69] 358 ? S 0:22 [migration/69] 359 ? S 0:00 [ksoftirqd/69] 361 ? I< 0:00 [kworker/69:0H-kblockd] 362 ? S 0:00 [cpuhp/70] 363 ? S 0:22 [migration/70] 364 ? S 0:00 [ksoftirqd/70] 366 ? I< 0:00 [kworker/70:0H-kblockd] 367 ? S 0:00 [cpuhp/71] 368 ? S 0:22 [migration/71] 369 ? S 0:00 [ksoftirqd/71] 371 ? I< 0:00 [kworker/71:0H] 372 ? S 0:00 [cpuhp/72] 373 ? S 0:22 [migration/72] 374 ? S 0:00 [ksoftirqd/72] 376 ? I< 0:00 [kworker/72:0H-kblockd] 377 ? S 0:00 [cpuhp/73] 378 ? S 0:22 [migration/73] 379 ? S 0:00 [ksoftirqd/73] 381 ? I< 0:00 [kworker/73:0H-kblockd] 382 ? S 0:00 [cpuhp/74] 383 ? S 0:22 [migration/74] 384 ? S 0:00 [ksoftirqd/74] 386 ? I< 0:00 [kworker/74:0H-kblockd] 387 ? S 0:00 [cpuhp/75] 388 ? S 0:22 [migration/75] 389 ? S 0:00 [ksoftirqd/75] 391 ? I< 0:00 [kworker/75:0H-kblockd] 392 ? S 0:00 [cpuhp/76] 393 ? S 0:22 [migration/76] 394 ? S 0:00 [ksoftirqd/76] 396 ? I< 0:00 [kworker/76:0H] 397 ? S 0:00 [cpuhp/77] 398 ? S 0:22 [migration/77] 399 ? S 0:00 [ksoftirqd/77] 401 ? I< 0:00 [kworker/77:0H-kblockd] 479 ? S 0:00 [cpuhp/78] 480 ? S 0:22 [migration/78] 481 ? S 0:00 [ksoftirqd/78] 483 ? I< 0:00 [kworker/78:0H-kblockd] 484 ? S 0:00 [cpuhp/79] 485 ? S 0:22 [migration/79] 486 ? S 0:00 [ksoftirqd/79] 488 ? I< 0:00 [kworker/79:0H-kblockd] 489 ? S 0:00 [cpuhp/80] 490 ? S 0:22 [migration/80] 491 ? S 0:00 [ksoftirqd/80] 493 ? I< 0:00 [kworker/80:0H-kblockd] 494 ? S 0:00 [cpuhp/81] 495 ? S 0:22 [migration/81] 496 ? S 0:00 [ksoftirqd/81] 498 ? I< 0:00 [kworker/81:0H-kblockd] 499 ? S 0:00 [cpuhp/82] 500 ? S 0:22 [migration/82] 501 ? S 0:00 [ksoftirqd/82] 503 ? I< 0:00 [kworker/82:0H-kblockd] 504 ? S 0:00 [cpuhp/83] 505 ? S 0:22 [migration/83] 506 ? S 0:00 [ksoftirqd/83] 508 ? I< 0:00 [kworker/83:0H-kblockd] 509 ? S 0:00 [cpuhp/84] 510 ? S 0:22 [migration/84] 511 ? S 0:00 [ksoftirqd/84] 513 ? I< 0:00 [kworker/84:0H-kblockd] 514 ? S 0:00 [cpuhp/85] 515 ? S 0:22 [migration/85] 516 ? S 0:00 [ksoftirqd/85] 518 ? I< 0:00 [kworker/85:0H-kblockd] 519 ? S 0:00 [cpuhp/86] 520 ? S 0:22 [migration/86] 521 ? S 0:00 [ksoftirqd/86] 523 ? I< 0:00 [kworker/86:0H-kblockd] 524 ? S 0:00 [cpuhp/87] 525 ? S 0:22 [migration/87] 526 ? S 0:00 [ksoftirqd/87] 528 ? I< 0:00 [kworker/87:0H] 529 ? S 0:00 [cpuhp/88] 530 ? S 0:22 [migration/88] 531 ? S 0:00 [ksoftirqd/88] 533 ? I< 0:00 [kworker/88:0H-kblockd] 534 ? S 0:00 [cpuhp/89] 535 ? S 0:22 [migration/89] 536 ? S 0:00 [ksoftirqd/89] 538 ? I< 0:00 [kworker/89:0H] 539 ? S 0:00 [cpuhp/90] 540 ? S 0:22 [migration/90] 541 ? S 0:00 [ksoftirqd/90] 543 ? I< 0:00 [kworker/90:0H] 544 ? S 0:00 [cpuhp/91] 545 ? S 0:22 [migration/91] 546 ? S 0:00 [ksoftirqd/91] 548 ? I< 0:00 [kworker/91:0H] 549 ? S 0:00 [cpuhp/92] 550 ? S 0:22 [migration/92] 551 ? S 0:00 [ksoftirqd/92] 553 ? I< 0:00 [kworker/92:0H-kblockd] 554 ? S 0:00 [cpuhp/93] 555 ? S 0:22 [migration/93] 556 ? S 0:00 [ksoftirqd/93] 558 ? I< 0:00 [kworker/93:0H-kblockd] 559 ? S 0:00 [cpuhp/94] 560 ? S 0:22 [migration/94] 561 ? S 0:00 [ksoftirqd/94] 563 ? I< 0:00 [kworker/94:0H-kblockd] 564 ? S 0:00 [cpuhp/95] 565 ? S 0:22 [migration/95] 566 ? S 0:00 [ksoftirqd/95] 568 ? I< 0:00 [kworker/95:0H-kblockd] 569 ? S 0:00 [cpuhp/96] 570 ? S 0:22 [migration/96] 571 ? S 0:00 [ksoftirqd/96] 573 ? I< 0:00 [kworker/96:0H-kblockd] 574 ? S 0:00 [cpuhp/97] 575 ? S 0:22 [migration/97] 576 ? S 0:00 [ksoftirqd/97] 578 ? I< 0:00 [kworker/97:0H-kblockd] 579 ? S 0:00 [cpuhp/98] 580 ? S 0:22 [migration/98] 581 ? S 0:00 [ksoftirqd/98] 583 ? I< 0:00 [kworker/98:0H-kblockd] 584 ? S 0:00 [cpuhp/99] 585 ? S 0:22 [migration/99] 586 ? S 0:00 [ksoftirqd/99] 588 ? I< 0:00 [kworker/99:0H-kblockd] 589 ? S 0:00 [cpuhp/100] 590 ? S 0:22 [migration/100] 591 ? S 0:00 [ksoftirqd/100] 593 ? I< 0:00 [kworker/100:0H-kblockd] 594 ? S 0:00 [cpuhp/101] 595 ? S 0:22 [migration/101] 596 ? S 0:00 [ksoftirqd/101] 598 ? I< 0:00 [kworker/101:0H] 599 ? S 0:00 [cpuhp/102] 600 ? S 0:22 [migration/102] 601 ? S 0:00 [ksoftirqd/102] 603 ? I< 0:00 [kworker/102:0H] 604 ? S 0:00 [cpuhp/103] 605 ? S 0:22 [migration/103] 606 ? S 0:00 [ksoftirqd/103] 608 ? I< 0:00 [kworker/103:0H] 609 ? S 0:00 [cpuhp/104] 610 ? S 0:22 [migration/104] 611 ? S 0:00 [ksoftirqd/104] 613 ? I< 0:00 [kworker/104:0H-kblockd] 614 ? S 0:00 [cpuhp/105] 615 ? S 0:22 [migration/105] 616 ? S 0:00 [ksoftirqd/105] 618 ? I< 0:00 [kworker/105:0H-kblockd] 619 ? S 0:00 [cpuhp/106] 620 ? S 0:22 [migration/106] 621 ? S 0:00 [ksoftirqd/106] 623 ? I< 0:00 [kworker/106:0H-kblockd] 624 ? S 0:00 [cpuhp/107] 625 ? S 0:22 [migration/107] 626 ? S 0:00 [ksoftirqd/107] 628 ? I< 0:00 [kworker/107:0H-kblockd] 629 ? S 0:00 [cpuhp/108] 630 ? S 0:22 [migration/108] 631 ? S 0:00 [ksoftirqd/108] 633 ? I< 0:00 [kworker/108:0H-kblockd] 634 ? S 0:00 [cpuhp/109] 635 ? S 0:22 [migration/109] 636 ? S 0:00 [ksoftirqd/109] 638 ? I< 0:00 [kworker/109:0H-kblockd] 639 ? S 0:00 [cpuhp/110] 640 ? S 0:22 [migration/110] 641 ? S 0:00 [ksoftirqd/110] 643 ? I< 0:00 [kworker/110:0H-kblockd] 644 ? S 0:00 [cpuhp/111] 645 ? S 0:22 [migration/111] 646 ? S 0:00 [ksoftirqd/111] 648 ? I< 0:00 [kworker/111:0H-kblockd] 649 ? S 0:00 [kdevtmpfs] 650 ? I< 0:00 [netns] 651 ? S 0:01 [kauditd] 654 ? S 0:01 [khungtaskd] 655 ? S 0:00 [oom_reaper] 656 ? I< 0:00 [writeback] 657 ? S 0:00 [kcompactd0] 658 ? S 0:00 [kcompactd1] 659 ? SN 0:00 [ksmd] 660 ? SN 0:13 [khugepaged] 661 ? I< 0:00 [crypto] 662 ? I< 0:00 [kintegrityd] 663 ? I< 0:00 [kblockd] 698 ? I< 0:00 [edac-poller] 699 ? I< 0:00 [devfreq_wq] 700 ? S 0:00 [watchdogd] 701 ? S 0:00 [kswapd0] 702 ? S 0:00 [kswapd1] 720 ? I< 0:00 [kthrotld] 721 ? I< 0:00 [ipv6_addrconf] 731 ? I< 0:00 [kstrp] 897 ? I< 0:00 [ixgbe] 898 ? I< 0:00 [ata_sff] 947 ? S 0:00 [scsi_eh_0] 948 ? I< 0:00 [scsi_tmf_0] 949 ? S 0:00 [scsi_eh_1] 950 ? I< 0:00 [scsi_tmf_1] 951 ? S 0:00 [scsi_eh_2] 952 ? I< 0:00 [scsi_tmf_2] 953 ? S 0:00 [scsi_eh_3] 954 ? I< 0:00 [scsi_tmf_3] 955 ? S 0:00 [scsi_eh_4] 956 ? I< 0:00 [scsi_tmf_4] 957 ? S 0:00 [scsi_eh_5] 958 ? I< 0:00 [scsi_tmf_5] 964 ? I< 0:00 [kworker/30:1H-events_highpri] 970 ? I< 0:00 [kdmflush] 976 ? I< 0:00 [kdmflush] 991 ? I< 0:00 [kworker/9:1H-events_highpri] 1002 ? I< 0:00 [kworker/20:1H-events_highpri] 1003 ? I< 0:07 [kworker/10:1H-kblockd] 1005 ? I< 0:00 [kworker/97:1H-events_highpri] 1008 ? I< 0:00 [kworker/u227:0] 1012 ? I< 0:00 [kworker/21:1H-events_highpri] 1013 ? S 0:21 [jbd2/dm-0-8] 1014 ? I< 0:00 [ext4-rsv-conver] 1015 ? I< 0:00 [kworker/17:1H-events_highpri] 1020 ? I< 0:00 [kworker/24:1H-events_highpri] 1024 ? I< 0:00 [kworker/74:1H-events_highpri] 1026 ? I< 0:00 [kworker/78:1H-events_highpri] 1029 ? I< 0:00 [kworker/79:1H-events_highpri] 1031 ? I< 0:00 [kworker/73:1H-events_highpri] 1033 ? I< 0:00 [kworker/19:1H-events_highpri] 1038 ? I< 0:00 [kworker/82:1H-events_highpri] 1050 ? I< 0:00 [kworker/29:1H-events_highpri] 1052 ? I< 0:00 [kworker/87:1H-events_highpri] 1053 ? I< 0:00 [kworker/85:1H-events_highpri] 1054 ? I< 0:00 [kworker/6:1H-events_highpri] 1055 ? I< 0:00 [kworker/72:1H-events_highpri] 1058 ? I< 0:00 [kworker/1:1H-kblockd] 1059 ? I< 0:00 [kworker/57:1H-events_highpri] 1071 ? I< 0:00 [kworker/83:1H-events_highpri] 1074 ? I< 0:00 [kworker/76:1H-events_highpri] 1076 ? I< 0:00 [kworker/58:1H-events_highpri] 1079 ? I< 0:00 [kworker/59:1H-events_highpri] 1080 ? I< 0:00 [rpciod] 1081 ? I< 0:00 [xprtiod] 1083 ? S 0:00 [nv_queue] 1084 ? S 0:00 [nv_queue] 1086 ? I< 0:00 [kworker/75:1H-events_highpri] 1089 ? I< 0:00 [kworker/22:1H-events_highpri] 1092 ? S 0:00 [nvidia-modeset/] 1093 ? S 0:00 [nvidia-modeset/] 1095 ? Ss 0:08 /lib/systemd/systemd-journald 1103 ? I< 0:00 [kworker/69:1H-events_highpri] 1104 ? I< 0:00 [kworker/13:1H-events_highpri] 1107 ? I< 0:00 [kworker/15:1H-events_highpri] 1109 ? Ss 0:01 /lib/systemd/systemd-udevd 1120 ? I< 0:00 [kworker/77:1H-events_highpri] 1124 ? I< 0:00 [kworker/26:1H-events_highpri] 1237 ? I< 0:00 [kworker/61:1H-events_highpri] 1260 ? I< 0:00 [ipmi-msghandler] 1261 ? I< 0:00 [kworker/84:1H-events_highpri] 1262 ? I< 0:00 [kworker/7:1H-events_highpri] 1265 ? I< 0:00 [kworker/25:1H-events_highpri] 1271 ? I< 0:00 [kworker/102:1H-events_highpri] 1273 ? I< 0:00 [kworker/53:1H-kblockd] 1275 ? I< 0:00 [kworker/106:1H-events_highpri] 1306 ? S 0:00 [irq/266-mei_me] 1308 ? I< 0:00 [kworker/11:1H-kblockd] 1309 ? I< 0:00 [kworker/36:1H-events_highpri] 1311 ? I< 0:00 [ttm_swap] 1315 ? I< 0:00 [kworker/3:1H-events_highpri] 1322 ? I< 0:00 [kdmflush] 1323 ? I< 0:00 [kdmflush] 1325 ? I< 0:00 [kworker/45:1H-events_highpri] 1326 ? I< 0:00 [kdmflush] 1328 ? I< 0:00 [kdmflush] 1330 ? I< 0:00 [kdmflush] 1332 ? I< 0:00 [kdmflush] 1335 ? I< 0:00 [kdmflush] 1337 ? I< 0:00 [kdmflush] 1355 ? SN 0:00 [kipmi0] 1360 ? I< 0:00 [kworker/66:1H-events_highpri] 1372 ? I< 0:00 [kworker/27:1H-kblockd] 1383 ? I< 0:00 [kworker/51:1H-events_highpri] 1390 ? I< 0:00 [kworker/16:1H-events_highpri] 1393 ? S 0:00 [jbd2/sda1-8] 1394 ? I< 0:00 [ext4-rsv-conver] 1400 ? I< 0:00 [kworker/60:1H-events_highpri] 1401 ? S 0:09 [jbd2/dm-2-8] 1402 ? I< 0:00 [ext4-rsv-conver] 1404 ? I< 0:00 [kworker/5:1H-kblockd] 1405 ? S 0:04 [jbd2/dm-3-8] 1406 ? I< 0:00 [ext4-rsv-conver] 1408 ? I< 0:00 [kworker/62:1H-events_highpri] 1409 ? S 0:00 [jbd2/dm-7-8] 1410 ? I< 0:00 [ext4-rsv-conver] 1412 ? I< 0:00 [kworker/63:1H-events_highpri] 1413 ? S 0:00 [jbd2/dm-8-8] 1414 ? I< 0:00 [ext4-rsv-conver] 1416 ? I< 0:00 [kworker/64:1H-events_highpri] 1417 ? S 0:06 [jbd2/dm-9-8] 1418 ? I< 0:00 [ext4-rsv-conver] 1420 ? S 0:03 [jbd2/dm-6-8] 1421 ? I< 0:00 [ext4-rsv-conver] 1423 ? S 0:14 [jbd2/dm-4-8] 1424 ? I< 0:00 [ext4-rsv-conver] 1427 ? S 0:00 [jbd2/dm-5-8] 1428 ? I< 0:00 [ext4-rsv-conver] 1434 ? I< 0:00 [kworker/18:1H-events_highpri] 1438 ? I< 0:00 [kworker/56:1H-events_highpri] 1442 ? I< 0:00 [kworker/68:1H-kblockd] 1443 ? I< 0:00 [kworker/65:1H-events_highpri] 1447 ? I< 0:00 [kworker/23:1H-events_highpri] 1455 ? Ss 0:00 /sbin/dhclient -4 -v -i -pf /run/dhclient.eno2.pid -lf /var/lib/dhcp/dhclient.eno2.leases -I -df /var/lib/dhcp/dhclient6.eno2.leases eno2 1464 ? I< 0:00 [kworker/81:1H-events_highpri] 1467 ? I< 0:00 [kworker/38:1H-events_highpri] 1468 ? I< 0:00 [kworker/37:1H-events_highpri] 1469 ? I< 0:00 [kworker/39:1H-events_highpri] 1472 ? I< 0:00 [kworker/71:1H-kblockd] 1476 ? I< 0:00 [kworker/34:1H-events_highpri] 1477 ? Ss 0:00 /usr/sbin/rpc.gssd 1483 ? Ss 0:00 /sbin/rpcbind -f -w 1484 ? I< 0:00 [kworker/88:1H-events_highpri] 1486 ? I< 0:00 [kworker/8:1H-events_highpri] 1488 ? I 0:00 [kworker/u224:1-ixgbe] 1489 ? Ss 0:00 /usr/bin/dbus-daemon --system --address=systemd: --nofork --nopidfile --systemd-activation --syslog-only 1493 ? Ssl 0:22 /usr/sbin/nscd 1499 ? Ss 0:11 /usr/bin/nvidia-persistenced --user nvpd 1508 ? S 0:00 [irq/267-nvidia] 1509 ? S 0:00 [irq/268-nvidia] 1510 ? S 0:00 [irq/269-nvidia] 1511 ? Ssl 0:24 /usr/sbin/rsyslogd -n -iNONE 1512 ? S 0:00 [irq/270-nvidia] 1513 ? S 0:00 [irq/271-nvidia] 1514 ? S 0:00 [irq/272-nvidia] 1515 ? S 0:00 [nvidia] 1516 ? S 0:00 [nv_queue] 1517 ? Ss 0:00 /usr/sbin/rasdaemon -f -r 1523 ? Ss 0:01 /lib/systemd/systemd-logind 1524 ? Ss 0:00 /usr/sbin/smartd -n 1526 ? I< 0:00 [kworker/14:1H-kblockd] 1530 ? S 0:00 [irq/273-nvidia] 1531 ? S 0:00 [irq/274-nvidia] 1532 ? S 0:00 [irq/275-nvidia] 1533 ? S 0:00 [irq/276-nvidia] 1534 ? S 0:00 [irq/277-nvidia] 1535 ? S 0:00 [irq/278-nvidia] 1536 ? S 0:00 [nvidia] 1537 ? S 0:00 [nv_queue] 1613 ? I< 0:00 [kworker/49:1H-events_highpri] 1652 ? I< 0:00 [kworker/32:1H-events_highpri] 1661 ? I< 0:00 [kworker/43:1H-events_highpri] 1669 ? I< 0:00 [nfsiod] 1679 ? I< 0:00 [kworker/47:1H-events_highpri] 1681 ? I< 0:00 [kworker/109:1H-events_highpri] 1683 ? Ssl 0:00 /usr/bin/python3 /usr/share/unattended-upgrades/unattended-upgrade-shutdown --wait-for-signal 1684 ? I< 0:00 [kworker/111:1H-events_highpri] 1690 ? I< 0:00 [kworker/55:1H-events_highpri] 1718 ? I< 0:00 [kworker/89:1H-events_highpri] 1725 ? I< 0:00 [kworker/31:1H-events_highpri] 1730 ? Ssl 0:35 /usr/sbin/ntpd -p /var/run/ntpd.pid -g -u 106:112 1732 ? I< 0:00 [kworker/50:1H-events_highpri] 1738 ? I< 0:00 [kworker/96:1H-events_highpri] 1781 ? I< 0:00 [kworker/86:1H-events_highpri] 1783 ? Ssl 37:38 splunkd --under-systemd --systemd-delegate=yes -p 8089 _internal_launch_under_systemd 1785 ? I< 0:00 [kworker/0:1H-events_highpri] 1786 ? S 0:00 [afs_pagecopy] 1800 ? Ss 0:00 /opt/nessus_agent/sbin/nessus-service -q 1801 ? I< 0:00 [kworker/46:1H-events_highpri] 1803 ? I< 0:00 [kworker/42:1H-events_highpri] 1806 ? Ss 0:00 /usr/sbin/sshd -D 1813 ? I< 0:00 [kworker/93:1H-events_highpri] 1815 ? Ssl 12:18 /usr/bin/containerd 1816 ? I< 0:00 [kworker/108:1H-events_highpri] 1824 ? S 0:00 [afs_callback] 1825 ? S 5:39 [afs_rxlistener] 1826 ? S 0:27 [afs_rxevent] 1827 ? Ss 0:00 /sbin/afsd -afsdb -dynroot -fakestat 1828 ? I< 0:00 [kworker/101:1H-events_highpri] 1836 ? S 0:16 [afsd] 1837 ? S 0:03 [afs_checkserver] 1840 ? S 0:55 [afs_background] 1841 ? S 0:47 [afs_background] 1842 ? S 0:49 [afs_background] 1843 ? S 1:08 [afs_background] 1856 ? S 0:08 [afs_cachetrim] 1895 ? I< 0:00 [kworker/41:1H-events_highpri] 1902 ? Ssl 10:03 /usr/bin/dockerd -H fd:// --containerd=/run/containerd/containerd.sock 1905 ? I< 0:00 [kworker/44:1H-events_highpri] 1914 ? I< 0:00 [kworker/90:1H-events_highpri] 1915 ? I< 0:00 [kworker/91:1H-events_highpri] 1944 ? I< 0:00 [kworker/48:1H-events_highpri] 1956 ? I< 0:00 [kworker/103:1H-events_highpri] 1999 ? Ss 0:03 /usr/lib/postfix/sbin/master -w 2001 ? S 0:00 qmgr -l -t unix -u 2004 ? I< 0:00 [kworker/104:1H-events_highpri] 2046 ? I< 0:00 [kworker/110:1H-events_highpri] 2055 ? I< 0:00 [kworker/28:1H-events_highpri] 2208 ? S 0:00 [NFSv4 callback] 2288 ? Ss 0:01 /usr/sbin/cron -f 2289 ? Ss 0:00 [splunkd pid=1783] splunkd --under-systemd --systemd-delegate=yes -p 8089 _internal_launch_under_systemd [process-runner] 2292 ? Ssl 0:11 /usr/sbin/automount --pid-file /var/run/autofs.pid 2295 ? I< 0:00 [kworker/92:1H-events_highpri] 2299 ttyS1 Ss+ 0:00 /sbin/agetty -o -p -- \u --keep-baud 115200,38400,9600 ttyS1 vt220 2300 tty1 Ss+ 0:00 /sbin/agetty -o -p -- \u --noclear tty1 linux 2327 ? I< 0:00 [kworker/12:1H-events_highpri] 2345 ? I< 0:00 [kworker/2:1H-events_highpri] 2383 ? I< 0:00 [kworker/80:1H-events_highpri] 2385 ? S 0:00 [irq/279-nvidia] 2386 ? S 0:00 [irq/280-nvidia] 2387 ? S 0:00 [irq/281-nvidia] 2388 ? S 0:00 [irq/282-nvidia] 2389 ? S 0:00 [irq/283-nvidia] 2390 ? S 0:00 [irq/284-nvidia] 2391 ? S 0:00 [nvidia] 2392 ? S 0:00 [nv_queue] 2394 ? I< 0:00 [kworker/52:1H-events_highpri] 2398 ? S 0:00 [irq/285-nvidia] 2399 ? S 0:00 [irq/286-nvidia] 2400 ? S 0:00 [irq/287-nvidia] 2401 ? S 0:00 [irq/288-nvidia] 2402 ? S 0:00 [irq/289-nvidia] 2403 ? S 0:00 [irq/290-nvidia] 2404 ? S 0:00 [nvidia] 2405 ? S 0:00 [nv_queue] 2407 ? S 0:00 /usr/sbin/slurmd 2422 ? I< 0:00 [kworker/4:1H-kblockd] 3096 ? I< 0:00 [kworker/70:1H-events_highpri] 3133 ? I< 0:00 [kworker/95:1H-events_highpri] 3157 ? I< 0:00 [kworker/67:1H-events_highpri] 3354 ? I< 0:00 [kworker/98:1H-events_highpri] 3403 ? I< 0:00 [kworker/33:1H-events_highpri] 3466 ? I< 0:00 [kworker/35:1H-events_highpri] 3575 ? S 0:00 [UVM global queu] 3576 ? S 0:00 [UVM deferred re] 3577 ? S 0:00 [UVM Tools Event] 3719 ? I< 0:00 [kworker/40:1H-events_highpri] 5579 ? I< 0:00 [kworker/94:1H-events_highpri] 9929 ? I< 0:00 [kworker/105:1H-events_highpri] 11965 ? I< 0:00 [kworker/99:1H-events_highpri] 12161 ? I< 0:00 [kworker/100:1H-events_highpri] 12973 ? I< 0:00 [kworker/54:1H-events_highpri] 13254 ? I< 0:00 [kworker/107:1H-events_highpri] 41529 ? Ss 0:00 sshd: rico [priv] 41541 ? S 0:02 sshd: rico 42537 ? Sl 0:05 /usr/sbin/munged 44261 ? I 0:00 [kworker/107:0-mm_percpu_wq] 45584 ? I 0:02 [kworker/39:0-events] 45644 ? I 0:00 [kworker/40:3-events] 45658 ? I 0:01 [kworker/54:0-events] 46744 ? I 0:00 [kworker/94:0-events] 48334 ? I 0:00 [kworker/44:2-events] 48361 ? I 0:00 [kworker/47:0-rcu_gp] 49993 ? I 0:00 [kworker/51:0-events] 50341 ? I 0:00 [kworker/53:1-events] 50919 ? I 0:00 [kworker/55:0-events] 50965 ? I 0:00 [kworker/85:2-events] 51446 ? S 0:00 nessusd -q 51447 ? Sl 10:08 /opt/nessus_agent/sbin/nessus-agent-module -q 54341 ? I 0:00 [kworker/73:2-events] 54425 ? I 0:01 [kworker/82:1-events] 54438 ? I 0:00 [kworker/69:0-events] 54483 ? I 0:00 [kworker/77:1-events] 55648 ? I 0:01 [kworker/6:0-events] 55691 ? I 0:00 [kworker/62:2-events] 55737 ? I 0:00 [kworker/64:0-events] 55855 ? I 0:00 [kworker/2:0-events] 55864 ? I 0:01 [kworker/11:0-events] 55883 ? I 0:01 [kworker/2:2-events] 55893 ? I 0:00 [kworker/16:2-events] 55921 ? Ss 0:00 sshd: dzb5732 [priv] 55935 ? S 0:00 sshd: dzb5732@notty 55936 ? Ss 0:00 bash 55995 ? S 0:00 sh /data6/deepro/tmp/.vscode-server/bin/31c37ee8f63491495ac49e43b8544550fbae4533/bin/code-server --start-server --host=127.0.0.1 --accept-server-license-terms --enable-remote-auto-shutdown --telemetry-level all --socket-path=/tmp/vscode-ssh-remote-server-sock-1708700833 --connection-token-file /data6/deepro/tmp/.vscode-server/.31c37ee8f63491495ac49e43b8544550fbae4533.token 56064 ? Sl 0:31 /data6/deepro/tmp/.vscode-server/bin/31c37ee8f63491495ac49e43b8544550fbae4533/node /data6/deepro/tmp/.vscode-server/bin/31c37ee8f63491495ac49e43b8544550fbae4533/out/server-main.js --start-server --host=127.0.0.1 --accept-server-license-terms --enable-remote-auto-shutdown --telemetry-level all --socket-path=/tmp/vscode-ssh-remote-server-sock-1708700833 --connection-token-file /data6/deepro/tmp/.vscode-server/.31c37ee8f63491495ac49e43b8544550fbae4533.token 56107 ? Ss 0:00 sshd: dzb5732 [priv] 56140 ? S 0:07 sshd: dzb5732@notty 56141 ? Ss 0:00 bash 56157 ? Sl 2:18 /data6/deepro/tmp/.vscode-server/bin/31c37ee8f63491495ac49e43b8544550fbae4533/node --dns-result-order=ipv4first /data6/deepro/tmp/.vscode-server/bin/31c37ee8f63491495ac49e43b8544550fbae4533/out/bootstrap-fork --type=extensionHost --transformURIs --useHostProxy=false 56164 ? Sl 0:16 /data6/deepro/tmp/.vscode-server/bin/31c37ee8f63491495ac49e43b8544550fbae4533/node /data6/deepro/tmp/.vscode-server/bin/31c37ee8f63491495ac49e43b8544550fbae4533/out/bootstrap-fork --type=ptyHost --logsPath /data6/deepro/tmp/.vscode-server/data/logs/20240223T100713 56179 ? Sl 9:15 /data6/deepro/tmp/.vscode-server/bin/31c37ee8f63491495ac49e43b8544550fbae4533/node /data6/deepro/tmp/.vscode-server/bin/31c37ee8f63491495ac49e43b8544550fbae4533/out/bootstrap-fork --type=fileWatcher 56195 ? I 0:00 [kworker/6:1-events] 56255 pts/3 Ss+ 0:00 /usr/bin/bash --init-file /data6/deepro/tmp/.vscode-server/bin/31c37ee8f63491495ac49e43b8544550fbae4533/out/vs/workbench/contrib/terminal/browser/media/shellIntegration-bash.sh 56275 pts/4 Ss+ 0:00 /usr/bin/bash --init-file /data6/deepro/tmp/.vscode-server/bin/31c37ee8f63491495ac49e43b8544550fbae4533/out/vs/workbench/contrib/terminal/browser/media/shellIntegration-bash.sh 56475 ? Ss 0:00 sshd: dzb5732 [priv] 56515 ? S 0:01 sshd: dzb5732@notty 56516 ? Ss 0:00 /bin/sh 56536 ? Sl 0:02 /afs/bx.psu.edu/user/d/dzb5732/.vscode-remote-containers/bin/31c37ee8f63491495ac49e43b8544550fbae4533/node /afs/bx.psu.edu/user/d/dzb5732/.vscode-remote-containers/dist/vscode-remote-containers-server-0.338.1.js 64567 ? I 0:00 [kworker/102:2-events] 64569 ? I 0:00 [kworker/81:1-mm_percpu_wq] 64577 ? I 0:00 [kworker/104:2-events] 64589 ? I 0:00 [kworker/14:1-events] 64602 ? I 0:00 [kworker/79:2-events] 64647 ? 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I 0:00 [kworker/47:1-events] 75894 pts/6 S+ 0:00 bash ./do-test.bash 75896 pts/6 S+ 0:11 /scratch/rico/.venv/bin/python3 /scratch/rico/.venv/bin/planemo --verbose test --job_config_file=/scratch/rico/galaxytools/tools/ncbi_fcs_adaptor/planemo_job_conf.xml --no_cleanup --galaxy_root=/scratch/rico/galaxy 75897 pts/6 S+ 0:00 tee test.log 76003 ? I 0:00 [kworker/60:0-events] 76006 ? I 0:00 [kworker/10:1-kdmflush] 76009 ? I 0:00 [kworker/2:1-events] 76104 ? Ss 0:00 /scratch/rico/.planemo/gx_venv_3/bin/python /scratch/rico/.planemo/gx_venv_3/bin/supervisord -c /tmp/tmpu7x63f_i/gravity/supervisor/supervisord.conf 76105 ? S 0:14 /scratch/rico/.planemo/gx_venv_3/bin/python /scratch/rico/.planemo/gx_venv_3/bin/celery --app galaxy.celery worker --concurrency 2 --loglevel DEBUG --pool threads --queues celery,galaxy.internal,galaxy.external 76106 ? 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I 0:00 [kworker/37:0-events] 76612 ? I 0:00 [kworker/84:2-cgroup_destroy] 76614 ? S 0:00 sleep 180 76631 ? I 0:00 [kworker/5:0-events] 76632 ? S 0:00 sleep 180 76703 ? I 0:00 [kworker/43:2-events] 76725 ? I 0:00 [kworker/35:0-events] 76744 ? I 0:00 [kworker/29:0] 76749 ? I 0:00 [kworker/31:1-rcu_gp] 76750 ? I 0:00 [kworker/32:0-events] 77043 ? I 0:00 [kworker/101:1] 77106 ? I 0:00 [kworker/u226:2-rpciod] 77127 ? I 0:00 [kworker/18:2-events] 77128 ? I< 0:00 [kworker/u229:1-xprtiod] 77195 ? I 0:00 [kworker/49:2-events] 77214 ? I 0:00 [kworker/28:2] 77215 ? I 0:00 [kworker/44:0-events] 77220 ? I 0:00 [kworker/33:2-events] 77234 ? I 0:00 [kworker/u224:2] 77317 ? I 0:00 [kworker/u225:0-events_unbound] 77318 pts/6 R+ 0:00 ps ax 104034 ? Sl 17:26 /data6/deepro/miniconda3/envs/dnanexus/bin/python -m ipykernel_launcher --f=/afs/bx.psu.edu/user/d/dzb5732/.local/share/jupyter/runtime/kernel-v2-97629et4BqJf1SGy3.json Shut down supervisord has terminated engine.test returning [<planemo.test.results.StructuredData object at 0x7f4411ea56a0>] No file specified for test_output_markdown, skipping test output. No file specified for test_output_text, skipping test output. No file specified for test_output_xunit, skipping test output. No file specified for test_output_junit, skipping test output. No file specified for test_output_allure, skipping test output. Killing pid file [/scratch/rico/galaxy/main.pid] pid_file exists? [False] All 2 test(s) executed passed. ncbi_fcs_adaptor (Test #1): passed ncbi_fcs_adaptor (Test #2): passed Exiting planemo with exit code [0]