Mercurial > repos > richard-burhans > ncbi_fcs_adaptor
changeset 0:d55ad8533d58 draft default tip
planemo upload for repository https://github.com/richard-burhans/galaxytools/tree/main/tools/ncbi_fcs_adaptor commit 74ccb005520db16be005e6471e8624357aca7d94
| author | richard-burhans |
|---|---|
| date | Fri, 01 Mar 2024 18:26:57 +0000 |
| parents | |
| children | |
| files | do-test.bash doit.bash fake macros.xml ncbi_fcs_adaptor.xml notes.txt planemo_job_conf.xml serve.log test-data/adaptor_report.tab test-data/clean_fasta.fa.gz test-data/fcsadaptor_prok_test.fa.gz test.log |
| diffstat | 12 files changed, 18075 insertions(+), 0 deletions(-) [+] |
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--- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/do-test.bash Fri Mar 01 18:26:57 2024 +0000 @@ -0,0 +1,15 @@ +#!/usr/bin/env bash + +export "PLANEMO_GLOBAL_CONFIG_PATH=/scratch/rico/.planemo" +export "PLANEMO_GLOBAL_WORKSPACE=/scratch/rico/.planemo" + +rm -rf /tmp/tmp* /scratch/rico/.planemo + +planemo \ + --verbose \ + test \ + --job_config_file=/scratch/rico/galaxytools/tools/ncbi_fcs_adaptor/planemo_job_conf.xml \ + --no_cleanup \ + --galaxy_root=/scratch/rico/galaxy 2>&1 \ + | tee test.log +
--- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/doit.bash Fri Mar 01 18:26:57 2024 +0000 @@ -0,0 +1,15 @@ +#!/usr/bin/env bash + +export "PLANEMO_GLOBAL_CONFIG_PATH=/scratch/rico/.planemo" +export "PLANEMO_GLOBAL_WORKSPACE=/scratch/rico/.planemo" + +rm -rf /tmp/tmp* /scratch/rico/.planemo + +planemo \ + --verbose \ + serve \ + --job_config_file=/scratch/rico/galaxytools/tools/ncbi_fcs_adaptor/planemo_job_conf.xml \ + --no_cleanup \ + --galaxy_root=/scratch/rico/galaxy 2>&1 \ + | tee serve.log +
--- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/fake Fri Mar 01 18:26:57 2024 +0000 @@ -0,0 +1,15 @@ +categories: +- Sequence Analysis +description: FCS-adaptor detects adaptor and vector contamination in genome sequences. +homepage_url: https://github.com/ncbi/fcs +long_description: | + FCS-adaptor detects adaptor and vector contamination in genome + sequences. FCS-adaptor is a high-throughput implementation of NCBI + VecScreen. The FCS-adaptor executable retrieves a Docker or Singularity + container and runs a pipeline to screen input sequences against a + non-redudant database of adaptors and vectors using stringent BLAST + searches and remove contaminants from your genome. +name: ncbi_fcs_adaptor +owner: richard-burhans +remote_repository_url: https://github.com/richard-burhans/galaxytools/tree/main/tools/ncbi_fcs_adaptor +type: unrestricted
--- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/macros.xml Fri Mar 01 18:26:57 2024 +0000 @@ -0,0 +1,15 @@ +<macros> + <xml name="requirements"> + <requirements> + <container type="docker">ncbi/fcs-adaptor:@TOOL_VERSION@</container> + </requirements> + </xml> + <token name="@TOOL_VERSION@">0.5.0</token> + <token name="@VERSION_SUFFIX@">0</token> + <token name="@PROFILE@">21.05</token> + <xml name="edam_ontology"> + <edam_operations> + <edam_operation>operation_3187</edam_operation> + </edam_operations> + </xml> +</macros>
--- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/ncbi_fcs_adaptor.xml Fri Mar 01 18:26:57 2024 +0000 @@ -0,0 +1,68 @@ +<tool id="ncbi_fcs_adaptor" name="NCBI FCS Adaptor" version="@TOOL_VERSION@+galaxy@VERSION_SUFFIX@" profile="@PROFILE@"> + <description>detects contamination from foreign organisms in genome sequences</description> + <macros> + <import>macros.xml</import> + </macros> + <expand macro="edam_ontology"/> + <expand macro="requirements"/> + <command detect_errors="exit_code"><![CDATA[ + /app/fcs/bin/av_screen_x -o "\$(pwd)" '$tax' '$input' + ]]></command> + <inputs> + <param name="input" type="data" format="fasta" label="Input file (Fasta file)" help="To detect contamination from adaptors and vectors, a genome sequence in a fasta file."/> + <param name="tax" type="select" label="Choose the taxonomy"> + <option value="--euk" selected="true">Eukaryotes</option> + <option value="--prok">Prokaryotes</option> + </param> + <section name="advanced" title="Advanced options" expanded="false"> + <param name="optional_log" type="select" label="Choose additional logs" multiple="true" display="checkboxes"> + <option value="adaptor_log" selected="false">Adaptor log</option> + <option value="validate_fasta_log" selected="false">FASTA validation log</option> + </param> + </section> + </inputs> + <outputs> + <data name="adaptor_report" format="tabular" from_work_dir="fcs_adaptor_report.txt" label="${tool.name} on ${on_string}: Adaptor report"/> + <data name="clean_fasta" format="fasta" from_work_dir="cleaned_sequences/*.dat" label="${tool.name} on ${on_string}: Cleaned Fasta"/> + <data name="adaptor_log" format="txt" from_work_dir="fcs_adaptor.log" label="${tool.name} on ${on_string}: Adaptor log"> + <filter>advanced['optional_log'] is not None and 'adaptor_log' in advanced['optional_log'].split(',')</filter> + </data> + <data name="validate_fasta_log" format="txt" from_work_dir="validate_fasta.txt" label="${tool.name} on ${on_string}: FASTA validation log"> + <filter>advanced['optional_log'] is not None and 'validate_fasta_log' in advanced['optional_log'].split(',')</filter> + </data> + </outputs> + <tests> + <test expect_num_outputs="2"> + <param name="input" value="fcsadaptor_prok_test.fa.gz" ftype="fasta"/> + <param name="tax" value="--prok"/> + <output name="adaptor_report" file="adaptor_report.tab" ftype="tabular" /> + <output name="clean_fasta" decompress="true" file="clean_fasta.fa.gz" ftype="fasta" /> + </test> + <test expect_num_outputs="4"> + <param name="input" value="fcsadaptor_prok_test.fa.gz" ftype="fasta"/> + <param name="tax" value="--prok"/> + <param name="optional_log" value="adaptor_log,validate_fasta_log"/> + <output name="adaptor_report" file="adaptor_report.tab" ftype="tabular" /> + <output name="clean_fasta" decompress="true" file="clean_fasta.fa.gz" ftype="fasta" /> + <output name="adaptor_log"> + <assert_contents> + <has_text_matching expression="\bINFO \[workflow \] completed success\b" /> + </assert_contents> + </output> + <output name="validate_fasta_log"> + <assert_contents> + <has_size value="0" /> + </assert_contents> + </output> + </test> + </tests> + <help><![CDATA[ + FCS-adaptor is a high-throughput implementation of NCBI VecScreen. FCS-adaptor runs a pipeline to screen input sequences against a non-redudant database of adaptors and vectors using stringent BLAST searches and remove contaminants from your genome. + + FCS-adaptor removes terminal and internal matches to foreign sequences. Sequences identified as mostly adaptor/vector are removed entirely. FCS-adaptor produces a tabular output with details on the contaminant sequences identified as well as a cleaned FASTA. + + Please see the wiki for more information. + + https://github.com/ncbi/fcs/wiki/FCS-adaptor + ]]></help> +</tool>
--- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/notes.txt Fri Mar 01 18:26:57 2024 +0000 @@ -0,0 +1,17 @@ +-rw-r--r-- 1 rico rico 0 Feb 22 20:46 fasta_validation_log.txt +-rw-r--r-- 1 rico rico 15015 Feb 22 20:46 adapter_log.txt +-rw-r--r-- 1 rico rico 1996423 Feb 22 20:46 cleaned.fa +-rw-r--r-- 1 rico rico 36 Feb 22 20:46 adapter_report.tabular + + +<!-- + $DOCKER run --init --name $CONTAINER --user "$(id -u):$(id -g)" -v $FASTA_DIRNAME:/sample-volume/ \ + -v $EXPANDED_OUTPUT:/output-volume/ $DOCKER_IMAGE \ + /app/fcs/bin/av_screen_x -o /output-volume/ $TAX /sample-volume/$FASTA_FILENAME + + singularity run $CONTAINER \ + --bind $FASTA_DIRNAME:/sample-volume/ \ + --bind $EXPANDED_OUTPUT:/output-volume/ \ + $SINGULARITY_IMAGE \ + /app/fcs/bin/av_screen_x -o /output-volume/ $TAX /sample-volume/$FASTA_FILENAME +-->
--- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/planemo_job_conf.xml Fri Mar 01 18:26:57 2024 +0000 @@ -0,0 +1,15 @@ +<?xml version="1.0"?> +<!-- A sample job config that explicitly configures job running the way it is + configured by default (if there is no explicit config). --> +<job_conf> + <plugins> + <plugin id="local" type="runner" load="galaxy.jobs.runners.local:LocalJobRunner" workers="4"/> + </plugins> + <destinations default="docker_local"> + <destination id="local" runner="local"/> + <destination id="docker_local" runner="local"> + <param id="docker_enabled">true</param> + <param id="docker_sudo">false</param> + </destination> + </destinations> +</job_conf>
--- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/serve.log Fri Mar 01 18:26:57 2024 +0000 @@ -0,0 +1,4332 @@ +Created directory for Galaxy configuration [/tmp/tmpqrlh6ih1] +Writing dependency_resolvers_config_file to path /tmp/tmpqrlh6ih1/resolvers_conf.xml with contents [<dependency_resolvers> + <tool_shed_packages /> + <conda auto_init="True" auto_install="True" ensure_channels="conda-forge,bioconda,defaults" prefix="/afs/bx.psu.edu/home/rico/miniconda3" condarc_override="/scratch/rico/.planemo/condarc" /> + <conda versionless="true" auto_init="True" auto_install="True" ensure_channels="conda-forge,bioconda,defaults" prefix="/afs/bx.psu.edu/home/rico/miniconda3" condarc_override="/scratch/rico/.planemo/condarc" /> +</dependency_resolvers> +] +Writing tool_conf to path /tmp/tmpqrlh6ih1/tool_conf.xml with contents [<toolbox> + <tool file="data_source/upload.xml" /> + <tool file="/scratch/rico/galaxytools/tools/ncbi_fcs_adaptor/ncbi_fcs_adaptor.xml" /> +</toolbox> +] +Starting Galaxy with command [cd /scratch/rico/galaxy && if [ -d .venv ]; then GALAXY_VIRTUAL_ENV=.venv; else GALAXY_VIRTUAL_ENV=/scratch/rico/.planemo/gx_venv_3; fi && export GALAXY_VIRTUAL_ENV && echo "Set \$GALAXY_VIRTUAL_ENV to $GALAXY_VIRTUAL_ENV" && if [ -e "$GALAXY_VIRTUAL_ENV" ]; then echo "Virtual environment directory exists."; else echo "Virtual environment directory does not exist."; fi && if [ ! -e "$GALAXY_VIRTUAL_ENV" ]; then /scratch/rico/.venv/bin/virtualenv $GALAXY_VIRTUAL_ENV -p /scratch/rico/.venv/bin/python3; echo "Created virtualenv"; fi && echo "Set \$GALAXY_VIRTUAL_ENV to $GALAXY_VIRTUAL_ENV" && if [ -e "$GALAXY_VIRTUAL_ENV" ]; then echo "Virtual environment directory exists."; else echo "Virtual environment directory does not exist."; fi && if [ -e "$GALAXY_VIRTUAL_ENV" ]; then . "$GALAXY_VIRTUAL_ENV"/bin/activate; echo "Activated a virtualenv for Galaxy"; echo "$VIRTUAL_ENV"; else echo "Failed to activate virtualenv."; fi && bash -c 'pwd' && bash -c 'which python' && bash -c 'which pip' && bash -c 'echo $GALAXY_VIRTUAL_ENV' && bash -c 'echo $VIRTUAL_ENV' && bash -c 'ls -a' && /scratch/rico/galaxy/run.sh $COMMON_STARTUP_ARGS --server-name main] +With environment variables: +============================ +GALAXY_CONFIG_OVERRIDE_MASTER_API_KEY="test_key" +GALAXY_CONFIG_OVERRIDE_ADMIN_USERS="planemo@galaxyproject.org,test@bx.psu.edu" +GALAXY_CONFIG_OVERRIDE_EXPOSE_DATASET_PATH="True" +GALAXY_CONFIG_OVERRIDE_COLLECT_OUTPUTS_FROM="job_working_directory" +GALAXY_CONFIG_OVERRIDE_ALLOW_PATH_PASTE="True" +GALAXY_CONFIG_OVERRIDE_CHECK_MIGRATE_TOOLS="False" +GALAXY_CONFIG_OVERRIDE_USE_CACHED_DEPENDENCY_MANAGER="True" +GALAXY_CONFIG_OVERRIDE_BRAND="Configured by Planemo" +GALAXY_CONFIG_OVERRIDE_STRICT_CWL_VALIDATION="True" +GALAXY_CONFIG_OVERRIDE_CLEANUP_JOB="never" +GALAXY_CONFIG_OVERRIDE_SINGLE_USER="planemo@galaxyproject.org" +GALAXY_CONFIG_OVERRIDE_SERVER_NAME="main" +GALAXY_CONFIG_OVERRIDE_FTP_UPLOAD_DIR_TEMPLATE="${ftp_upload_dir}" +GALAXY_CONFIG_OVERRIDE_FTP_UPLOAD_PURGE="False" +GALAXY_CONFIG_OVERRIDE_FTP_UPLOAD_DIR="/scratch/rico/galaxytools/tools/ncbi_fcs_adaptor/test-data" +GALAXY_CONFIG_OVERRIDE_FTP_UPLOAD_SITE="Test Data" +GALAXY_CONFIG_OVERRIDE_CHECK_UPLOAD_CONTENT="False" +GALAXY_CONFIG_OVERRIDE_TOOL_DEPENDENCY_DIR="/tmp/tmpqrlh6ih1/deps" +GALAXY_CONFIG_OVERRIDE_FILE_PATH="/tmp/tmpqrlh6ih1/files" +GALAXY_CONFIG_OVERRIDE_NEW_FILE_PATH="/tmp/tmpqrlh6ih1/tmp" +GALAXY_CONFIG_OVERRIDE_TOOL_CONFIG_FILE="/tmp/tmpqrlh6ih1/tool_conf.xml,/tmp/tmpqrlh6ih1/shed_tools_conf.xml" +GALAXY_CONFIG_OVERRIDE_TOOL_SHEDS_CONFIG_FILE="/tmp/tmpqrlh6ih1/tool_sheds_conf.xml" +GALAXY_CONFIG_OVERRIDE_MANAGE_DEPENDENCY_RELATIONSHIPS="False" +GALAXY_CONFIG_OVERRIDE_JOB_WORKING_DIRECTORY="/tmp/tmpqrlh6ih1/job_working_directory" +GALAXY_CONFIG_OVERRIDE_TEMPLATE_CACHE_PATH="/tmp/tmpqrlh6ih1/compiled_templates" +GALAXY_CONFIG_OVERRIDE_CITATION_CACHE_TYPE="file" +GALAXY_CONFIG_OVERRIDE_CITATION_CACHE_DATA_DIR="/tmp/tmpqrlh6ih1/citations/data" +GALAXY_CONFIG_OVERRIDE_CITATION_CACHE_LOCK_DIR="/tmp/tmpqrlh6ih1/citations/lock" +GALAXY_CONFIG_OVERRIDE_DATABASE_AUTO_MIGRATE="True" +GALAXY_CONFIG_OVERRIDE_ENABLE_BETA_TOOL_FORMATS="True" +GALAXY_CONFIG_OVERRIDE_ID_SECRET="f6141d9059f331976b6b66b722a14f48" +GALAXY_CONFIG_OVERRIDE_LOG_LEVEL="DEBUG" +GALAXY_CONFIG_OVERRIDE_DEBUG="true" +GALAXY_CONFIG_OVERRIDE_WATCH_TOOLS="auto" +GALAXY_CONFIG_OVERRIDE_DEFAULT_JOB_SHELL="/bin/bash" +GALAXY_CONFIG_OVERRIDE_INTEGRATED_TOOL_PANEL_CONFIG="/tmp/tmpqrlh6ih1/integrated_tool_panel_conf.xml" +GALAXY_CONFIG_OVERRIDE_MIGRATED_TOOLS_CONFIG="/tmp/tmpqrlh6ih1/empty_tool_conf.xml" +GALAXY_CONFIG_OVERRIDE_TEST_DATA_DIR="/scratch/rico/galaxytools/tools/ncbi_fcs_adaptor/test-data" +GALAXY_CONFIG_OVERRIDE_SHED_DATA_MANAGER_CONFIG_FILE="/tmp/tmpqrlh6ih1/shed_data_manager_conf.xml" +GALAXY_CONFIG_OVERRIDE_OUTPUTS_TO_WORKING_DIRECTORY="True" +GALAXY_CONFIG_OVERRIDE_OBJECT_STORE_STORE_BY="uuid" +GALAXY_CONFIG_OVERRIDE_DATABASE_CONNECTION="sqlite:////tmp/tmpqrlh6ih1/galaxy.sqlite?isolation_level=IMMEDIATE" +GALAXY_CONFIG_OVERRIDE_JOB_CONFIG_FILE="/scratch/rico/galaxytools/tools/ncbi_fcs_adaptor/planemo_job_conf.xml" +GALAXY_CONFIG_OVERRIDE_JOB_METRICS_CONFIG_FILE="/tmp/tmpqrlh6ih1/job_metrics_conf.xml" +GALAXY_CONFIG_OVERRIDE_DEPENDENCY_RESOLVERS_CONFIG_FILE="/tmp/tmpqrlh6ih1/resolvers_conf.xml" +GALAXY_DEVELOPMENT_ENVIRONMENT="1" +GALAXY_LOG="main.log" +GALAXY_PID="main.pid" +GALAXY_CONFIG_FILE="/tmp/tmpqrlh6ih1/galaxy.yml" +GRAVITY_STATE_DIR="/tmp/tmpqrlh6ih1/gravity" +SUPERVISORD_SOCKET="/tmp/tmpwpqnbgo4.sock" +============================ +galaxy.util.commands WARNING 2024-02-23 14:19:34,170: Passing program arguments as a string may be a security hazard if combined with untrusted input +Set $GALAXY_VIRTUAL_ENV to /scratch/rico/.planemo/gx_venv_3 +Virtual environment directory does not exist. +created virtual environment CPython3.7.3.final.0-64 in 1093ms + creator CPython3Posix(dest=/scratch/rico/.planemo/gx_venv_3, clear=False, no_vcs_ignore=False, global=False) + seeder FromAppData(download=False, pip=bundle, setuptools=bundle, wheel=bundle, via=copy, app_data_dir=/afs/bx.psu.edu/home/rico/.local/share/virtualenv) + added seed packages: pip==23.3.2, setuptools==68.0.0, wheel==0.42.0 + activators BashActivator,CShellActivator,FishActivator,NushellActivator,PowerShellActivator,PythonActivator +Created virtualenv +Set $GALAXY_VIRTUAL_ENV to /scratch/rico/.planemo/gx_venv_3 +Virtual environment directory exists. +Activated a virtualenv for Galaxy +/scratch/rico/.planemo/gx_venv_3 +/scratch/rico/galaxy +/scratch/rico/.planemo/gx_venv_3/bin/python +/scratch/rico/.planemo/gx_venv_3/bin/pip +/scratch/rico/.planemo/gx_venv_3 +/scratch/rico/.planemo/gx_venv_3 +. +.. +check_model.sh +.ci +.circleci +CITATION +client +CODE_OF_CONDUCT.md +config +contrib +CONTRIBUTING.md +CONTRIBUTORS.md +.coveragerc +cron +database +doc +.dockerignore +extract_dataset_parts.sh +.flake8 +.git +.gitattributes +.git-blame-ignore-revs +.github +.gitignore +.gitpod.yml +hooks +.isort.cfg +.k8s_ci.Dockerfile +lib +LICENSE.txt +main.log +Makefile +manage_db.sh +manage_toolshed_db.sh +mypy.ini +package.json +packages +.pre-commit-config.yaml.sample +pyproject.toml +pytest.ini +README.rst +.redocly.lint-ignore.yaml +.redocly.yaml +requirements.txt +rolling_restart.sh +run_reports.sh +run.sh +run_tests.sh +run_tool_shed.sh +scripts +SECURITY.md +static +templates +test +test-data +tool-data +tools +tox.ini +tsconfig.json +.vscode +Activating virtualenv at /scratch/rico/.planemo/gx_venv_3 +Requirement already satisfied: pip>=20.3 in /scratch/rico/.planemo/gx_venv_3/lib/python3.7/site-packages (23.3.2) +Requirement already satisfied: wheel in /scratch/rico/.planemo/gx_venv_3/lib/python3.7/site-packages (0.42.0) + +[notice] A new release of pip is available: 23.3.2 -> 24.0 +[notice] To update, run: pip install --upgrade pip +Looking in indexes: https://wheels.galaxyproject.org/simple, https://pypi.python.org/simple +Ignoring billiard: markers 'python_version >= "3.8" and python_version < "3.12"' don't match your environment +Ignoring celery: markers 'python_version >= "3.8" and python_version < "3.12"' don't match your environment +Ignoring colorama: markers 'python_version >= "3.7" and python_version < "3.12" and platform_system == "Windows"' don't match your environment +Ignoring kombu: markers 'python_version >= "3.8" and python_version < "3.12"' don't match your environment +Ignoring numpy: markers 'python_version >= "3.8" and python_version < "3.9"' don't match your environment +Ignoring numpy: markers 'python_version >= "3.9" and python_version < "3.12"' don't match your environment +Ignoring pyreadline3: markers 'sys_platform == "win32" and python_version >= "3.8" and python_version < "3.12"' don't match your environment +Ignoring pyreadline: markers 'sys_platform == "win32" and python_version < "3.8" and python_version >= "3.7"' don't match your environment +Ignoring tzdata: markers 'python_version >= "3.7" and python_version < "3.12" and platform_system == "Windows"' don't match your environment +Collecting a2wsgi==1.7.0 (from -r requirements.txt (line 1)) + Using cached a2wsgi-1.7.0-py3-none-any.whl.metadata (1.6 kB) +Collecting adal==1.2.7 (from -r requirements.txt (line 2)) + Using cached adal-1.2.7-py2.py3-none-any.whl (55 kB) +Collecting aiobotocore==2.4.2 (from -r requirements.txt (line 3)) + Using cached aiobotocore-2.4.2-py3-none-any.whl.metadata (19 kB) +Collecting aiodataloader==0.4.0 (from -r requirements.txt (line 4)) + Using cached aiodataloader-0.4.0-py3-none-any.whl.metadata (16 kB) +Collecting aiofiles==23.2.1 (from -r requirements.txt (line 5)) + Using cached aiofiles-23.2.1-py3-none-any.whl.metadata (9.7 kB) +Collecting aiohttp==3.8.6 (from -r requirements.txt (line 6)) + Using cached aiohttp-3.8.6-cp37-cp37m-manylinux_2_17_x86_64.manylinux2014_x86_64.whl.metadata (7.7 kB) +Collecting aioitertools==0.11.0 (from -r requirements.txt (line 7)) + Using cached aioitertools-0.11.0-py3-none-any.whl.metadata (3.3 kB) +Collecting aiosignal==1.3.1 (from -r requirements.txt (line 8)) + Using cached aiosignal-1.3.1-py3-none-any.whl.metadata (4.0 kB) +Collecting alembic==1.12.1 (from -r requirements.txt (line 9)) + Using cached alembic-1.12.1-py3-none-any.whl.metadata (7.3 kB) +Collecting amqp==5.2.0 (from -r requirements.txt (line 10)) + Using cached amqp-5.2.0-py3-none-any.whl.metadata (8.9 kB) +Collecting aniso8601==9.0.1 (from -r requirements.txt (line 11)) + Using cached aniso8601-9.0.1-py2.py3-none-any.whl (52 kB) +Collecting anyio==3.7.1 (from -r requirements.txt (line 12)) + Using cached anyio-3.7.1-py3-none-any.whl.metadata (4.7 kB) 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cachecontrol-0.13.1-py3-none-any.whl.metadata (3.0 kB) +Collecting cached-property==1.5.2 (from -r requirements.txt (line 37)) + Using cached cached_property-1.5.2-py2.py3-none-any.whl (7.6 kB) +Collecting celery==5.2.7 (from -r requirements.txt (line 38)) + Using cached celery-5.2.7-py3-none-any.whl.metadata (20 kB) +Collecting certifi==2023.11.17 (from -r requirements.txt (line 40)) + Using cached certifi-2023.11.17-py3-none-any.whl.metadata (2.2 kB) +Collecting cffi==1.15.1 (from -r requirements.txt (line 41)) + Using cached cffi-1.15.1-cp37-cp37m-manylinux_2_17_x86_64.manylinux2014_x86_64.whl.metadata (1.1 kB) +Collecting charset-normalizer==3.3.2 (from -r requirements.txt (line 42)) + Using cached charset_normalizer-3.3.2-cp37-cp37m-manylinux_2_17_x86_64.manylinux2014_x86_64.whl.metadata (33 kB) +Collecting cheetah3==3.2.6.post1 (from -r requirements.txt (line 43)) + Using cached https://wheels.galaxyproject.org/simple/cheetah3/Cheetah3-3.2.6.post1-cp37-cp37m-manylinux_2_5_x86_64.manylinux1_x86_64.manylinux_2_17_x86_64.manylinux2014_x86_64.whl (199 kB) +Collecting circus==0.18.0 (from -r requirements.txt (line 44)) + Using cached circus-0.18.0-py3-none-any.whl.metadata (2.0 kB) +Collecting click-didyoumean==0.3.0 (from -r requirements.txt (line 45)) + Using cached click_didyoumean-0.3.0-py3-none-any.whl (2.7 kB) +Collecting click-plugins==1.1.1 (from -r requirements.txt (line 46)) + Using cached click_plugins-1.1.1-py2.py3-none-any.whl (7.5 kB) +Collecting click-repl==0.3.0 (from -r requirements.txt (line 47)) + Using cached click_repl-0.3.0-py3-none-any.whl.metadata (3.6 kB) +Collecting click==8.1.7 (from -r requirements.txt (line 48)) + Using cached click-8.1.7-py3-none-any.whl.metadata (3.0 kB) +Collecting cloudauthz==0.6.0 (from -r requirements.txt (line 49)) + Using cached cloudauthz-0.6.0-py2.py3-none-any.whl (8.9 kB) +Collecting cloudbridge==3.2.0 (from 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ruamel.yaml.clib-0.2.8-cp37-cp37m-manylinux_2_5_x86_64.manylinux1_x86_64.whl (551 kB) +Using cached ruamel.yaml-0.17.21-py3-none-any.whl (109 kB) +Using cached s3fs-2023.1.0-py3-none-any.whl (27 kB) +Using cached schema_salad-8.4.20230808163024-cp37-cp37m-manylinux_2_17_x86_64.manylinux2014_x86_64.manylinux_2_28_x86_64.whl (1.0 MB) +Using cached sniffio-1.3.0-py3-none-any.whl (10 kB) +Using cached SQLAlchemy-1.4.50-cp37-cp37m-manylinux_2_5_x86_64.manylinux1_x86_64.manylinux_2_17_x86_64.manylinux2014_x86_64.whl (1.6 MB) +Using cached sqlparse-0.4.4-py3-none-any.whl (41 kB) +Using cached starlette_context-0.3.5-py37-none-any.whl (12 kB) +Using cached starlette_graphene3-0.6.0-py3-none-any.whl (9.0 kB) +Using cached starlette-0.27.0-py3-none-any.whl (66 kB) +Using cached supervisor-4.2.5-py2.py3-none-any.whl (319 kB) +Using cached svgwrite-1.4.3-py3-none-any.whl (67 kB) +Using cached tenacity-8.2.3-py3-none-any.whl (24 kB) +Using cached tinydb-4.8.0-py3-none-any.whl (24 kB) +Using cached tomli-2.0.1-py3-none-any.whl (12 kB) +Using cached tornado-6.2-cp37-abi3-manylinux_2_5_x86_64.manylinux1_x86_64.manylinux_2_17_x86_64.manylinux2014_x86_64.whl (423 kB) +Using cached tqdm-4.66.1-py3-none-any.whl (78 kB) +Using cached tuspy-1.0.1-py3-none-any.whl (14 kB) +Using cached tuswsgi-0.5.5-py2.py3-none-any.whl (6.9 kB) +Using cached typing_extensions-4.7.1-py3-none-any.whl (33 kB) +Using cached tzlocal-5.1-py3-none-any.whl (21 kB) +Using cached ubiquerg-0.6.3-py2.py3-none-any.whl (13 kB) +Using cached urllib3-1.26.18-py2.py3-none-any.whl (143 kB) +Using cached uvicorn-0.22.0-py3-none-any.whl (58 kB) +Using cached uvloop-0.18.0-cp37-cp37m-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (4.3 MB) +Using cached vine-5.1.0-py3-none-any.whl (9.6 kB) +Using cached wcwidth-0.2.12-py2.py3-none-any.whl (34 kB) +Using cached wrapt-1.16.0-cp37-cp37m-manylinux_2_5_x86_64.manylinux1_x86_64.manylinux_2_17_x86_64.manylinux2014_x86_64.whl (77 kB) +Using cached yacman-0.9.2-py3-none-any.whl (18 kB) +Using cached yarl-1.9.3-cp37-cp37m-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (288 kB) +Using cached zipp-3.15.0-py3-none-any.whl (6.8 kB) +Using cached zstandard-0.21.0-cp37-cp37m-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (2.7 MB) +Installing collected packages: zipstream-new, whoosh, webencodings, wcwidth, ubiquerg, sqlitedict, sortedcontainers, shellescape, repoze-lru, pytz, pyeventsystem, parsley, msgpack, mistune, mercurial, edam-ontology, docopt, dictobj, cached-property, boto, boltons, billiard, beaker, bagit, arcp, appdirs, aniso8601, zstandard, zipp, wrapt, webob, vine, uvloop, urllib3, typing-extensions, tqdm, tornado, tomli, tinydb, tenacity, svgwrite, supervisor, sqlparse, sniffio, six, setuptools-scm, ruamel-yaml-clib, regex, pyzmq, pyyaml, python-multipart, python-magic, pysam, pyrsistent, pyparsing, pygments, pycryptodome, pycparser, pyasn1, psutil, prompt-toolkit, pkgutil-resolve-name, pebble, packaging, orjson, oauthlib, numpy, nodeenv, mypy-extensions, multidict, mdurl, markupsafe, lxml, lagom, jsonref, jmespath, isal, idna, humanfriendly, greenlet, future, fsspec, frozenlist, filelock, exceptiongroup, docutils, dnspython, defusedxml, decorator, cheetah3, charset-normalizer, certifi, bcrypt, backports-zoneinfo, babel, attmap, asynctest, aiofiles, a2wsgi, yarl, tzlocal, tuswsgi, tifffile, ruamel-yaml, rsa, routes, requests, python3-openid, python-dateutil, pyjwt, pydot, pydantic, promise, paste, oyaml, networkx, mrcfile, markdown-it-py, jinja2, isodate, importlib-resources, importlib-metadata, h5py, h11, graphql-core, galaxy-sequence-utils, fs, email-validator, ecdsa, dparse, deprecation, coloredlogs, circus, cffi, bx-python, bleach, async-timeout, apispec, anyio, amqp, aiosignal, aioitertools, aiodataloader, starlette, sqlalchemy, rich, requests-unixsocket, requests-toolbelt, requests-oauthlib, rdflib, python-jose, pynacl, pylibmagic, pykwalify, pyfaidx, pydantic-tes, pastedeploy, markdown, mako, kombu, isa-rwval, h5grove, gunicorn, graphql-relay, cryptography, conda-package-streaming, cloudbridge, click, cachecontrol, botocore, bagit-profile, attrs, argcomplete, uvicorn, starlette-context, social-auth-core, prov, paramiko, jsonschema, gravity, graphene, fastapi, click-repl, click-plugins, click-didyoumean, bdbag, alembic, aiohttp, adal, yacman, tuspy, starlette-graphene3, schema-salad, pulsar-galaxy-lib, msal, graphene-sqlalchemy, fastapi-utils, cloudauthz, celery, aiobotocore, s3fs, refgenconf, cwl-upgrader, bioblend, gxformat2, cwl-utils, galaxy2cwl, cwltool, rocrate +Successfully installed a2wsgi-1.7.0 adal-1.2.7 aiobotocore-2.4.2 aiodataloader-0.4.0 aiofiles-23.2.1 aiohttp-3.8.6 aioitertools-0.11.0 aiosignal-1.3.1 alembic-1.12.1 amqp-5.2.0 aniso8601-9.0.1 anyio-3.7.1 apispec-6.3.0 appdirs-1.4.4 arcp-0.2.1 argcomplete-3.1.2 async-timeout-4.0.3 asynctest-0.13.0 attmap-0.13.2 attrs-23.1.0 babel-2.13.1 backports-zoneinfo-0.2.1 bagit-1.8.1 bagit-profile-1.3.1 bcrypt-4.0.1 bdbag-1.7.1 beaker-1.12.1 billiard-3.6.4.0 bioblend-1.2.0 bleach-6.0.0 boltons-23.1.1 boto-2.49.0 botocore-1.27.59 bx-python-0.10.0 cachecontrol-0.13.1 cached-property-1.5.2 celery-5.2.7 certifi-2023.11.17 cffi-1.15.1 charset-normalizer-3.3.2 cheetah3-3.2.6.post1 circus-0.18.0 click-8.1.7 click-didyoumean-0.3.0 click-plugins-1.1.1 click-repl-0.3.0 cloudauthz-0.6.0 cloudbridge-3.2.0 coloredlogs-15.0.1 conda-package-streaming-0.9.0 cryptography-41.0.5 cwl-upgrader-1.2.8 cwl-utils-0.28 cwltool-3.1.20221109155812 decorator-5.1.1 defusedxml-0.7.1 deprecation-2.1.0 dictobj-0.4 dnspython-2.3.0 docopt-0.6.2 docutils-0.18.1 dparse-0.6.3 ecdsa-0.18.0 edam-ontology-1.25.2 email-validator-2.0.0.post2 exceptiongroup-1.2.0 fastapi-0.98.0 fastapi-utils-0.2.1 filelock-3.12.2 frozenlist-1.3.3 fs-2.4.16 fsspec-2023.1.0 future-0.18.3 galaxy-sequence-utils-1.1.5 galaxy2cwl-0.1.4 graphene-3.3 graphene-sqlalchemy-3.0.0b3 graphql-core-3.2.3 graphql-relay-3.2.0 gravity-1.0.4 greenlet-2.0.2 gunicorn-21.2.0 gxformat2-0.18.0 h11-0.14.0 h5grove-1.3.0 h5py-3.8.0 humanfriendly-10.0 idna-3.5 importlib-metadata-4.13.0 importlib-resources-5.12.0 isa-rwval-0.10.10 isal-1.3.0 isodate-0.6.1 jinja2-3.1.2 jmespath-1.0.1 jsonref-1.1.0 jsonschema-4.17.3 kombu-5.2.4 lagom-2.6.0 lxml-4.9.3 mako-1.2.4 markdown-3.4.4 markdown-it-py-2.2.0 markupsafe-2.1.3 mdurl-0.1.2 mercurial-6.6 mistune-2.0.5 mrcfile-1.4.3 msal-1.25.0 msgpack-1.0.5 multidict-6.0.4 mypy-extensions-1.0.0 networkx-2.5 nodeenv-1.8.0 numpy-1.21.6 oauthlib-3.2.2 orjson-3.9.7 oyaml-1.0 packaging-23.2 paramiko-3.3.1 parsley-1.3 paste-3.7.1 pastedeploy-3.1.0 pebble-5.0.4 pkgutil-resolve-name-1.3.10 promise-2.3 prompt-toolkit-3.0.41 prov-1.5.1 psutil-5.9.6 pulsar-galaxy-lib-0.15.5 pyasn1-0.5.1 pycparser-2.21 pycryptodome-3.19.0 pydantic-1.10.13 pydantic-tes-0.1.5 pydot-1.4.2 pyeventsystem-0.1.0 pyfaidx-0.7.2.2 pygments-2.17.2 pyjwt-2.8.0 pykwalify-1.8.0 pylibmagic-0.5.0 pynacl-1.5.0 pyparsing-3.0.9 pyrsistent-0.19.3 pysam-0.22.0 python-dateutil-2.8.2 python-jose-3.3.0 python-magic-0.4.27 python-multipart-0.0.7 python3-openid-3.2.0 pytz-2023.3.post1 pyyaml-6.0.1 pyzmq-25.1.1 rdflib-6.2.0 refgenconf-0.12.2 regex-2023.10.3 repoze-lru-0.7 requests-2.31.0 requests-oauthlib-1.3.1 requests-toolbelt-1.0.0 requests-unixsocket-0.3.0 rich-13.7.0 rocrate-0.9.0 routes-2.5.1 rsa-4.9 ruamel-yaml-0.17.21 ruamel-yaml-clib-0.2.8 s3fs-2023.1.0 schema-salad-8.4.20230808163024 setuptools-scm-5.0.2 shellescape-3.8.1 six-1.16.0 sniffio-1.3.0 social-auth-core-4.0.3 sortedcontainers-2.4.0 sqlalchemy-1.4.50 sqlitedict-2.1.0 sqlparse-0.4.4 starlette-0.27.0 starlette-context-0.3.5 starlette-graphene3-0.6.0 supervisor-4.2.5 svgwrite-1.4.3 tenacity-8.2.3 tifffile-2021.11.2 tinydb-4.8.0 tomli-2.0.1 tornado-6.2 tqdm-4.66.1 tuspy-1.0.1 tuswsgi-0.5.5 typing-extensions-4.7.1 tzlocal-5.1 ubiquerg-0.6.3 urllib3-1.26.18 uvicorn-0.22.0 uvloop-0.18.0 vine-5.1.0 wcwidth-0.2.12 webencodings-0.5.1 webob-1.8.7 whoosh-2.7.4 wrapt-1.16.0 yacman-0.9.2 yarl-1.9.3 zipp-3.15.0 zipstream-new-1.1.8 zstandard-0.21.0 + +[notice] A new release of pip is available: 23.3.2 -> 24.0 +[notice] To update, run: pip install --upgrade pip + +[notice] A new release of pip is available: 23.3.2 -> 24.0 +[notice] To update, run: pip install --upgrade pip +Looking in indexes: https://wheels.galaxyproject.org/simple, https://pypi.python.org/simple +Collecting watchdog (from -r /dev/stdin (line 1)) + Using cached watchdog-3.0.0-py3-none-manylinux2014_x86_64.whl.metadata (36 kB) +Using cached watchdog-3.0.0-py3-none-manylinux2014_x86_64.whl (82 kB) +Installing collected packages: watchdog +Successfully installed watchdog-3.0.0 + +[notice] A new release of pip is available: 23.3.2 -> 24.0 +[notice] To update, run: pip install --upgrade pip +Installing node into /scratch/rico/.planemo/gx_venv_3 with nodeenv. + * Install prebuilt node (18.12.1) ..... done. + * Appending data to /scratch/rico/.planemo/gx_venv_3/bin/activate + * Appending data to /scratch/rico/.planemo/gx_venv_3/bin/activate.fish +The Galaxy client build is up to date and will not be rebuilt at this time. +Activating virtualenv at /scratch/rico/.planemo/gx_venv_3 +Adding service gunicorn +supervisord is not running +Adding service celery +supervisord is not running +Adding service celery-beat +supervisord is not running +Executing: galaxy +2024-02-23 14:21:29,531 WARN No file matches via include "/tmp/tmpqrlh6ih1/gravity/supervisor/supervisord.conf.d/*.conf" +2024-02-23 14:21:29,531 INFO Included extra file "/tmp/tmpqrlh6ih1/gravity/supervisor/supervisord.conf.d/_default_.d/galaxy_celery-beat_celery-beat.conf" during parsing +2024-02-23 14:21:29,531 INFO Included extra file "/tmp/tmpqrlh6ih1/gravity/supervisor/supervisord.conf.d/_default_.d/galaxy_celery_celery.conf" during parsing +2024-02-23 14:21:29,531 INFO Included extra file "/tmp/tmpqrlh6ih1/gravity/supervisor/supervisord.conf.d/_default_.d/galaxy_gunicorn_gunicorn.conf" during parsing +2024-02-23 14:21:29,535 INFO RPC interface 'supervisor' initialized +2024-02-23 14:21:29,536 CRIT Server 'unix_http_server' running without any HTTP authentication checking +2024-02-23 14:21:29,536 INFO supervisord started with pid 78500 +2024-02-23 14:21:29,833 INFO spawned: 'celery' with pid 78503 +2024-02-23 14:21:29,836 INFO spawned: 'celery-beat' with pid 78504 +2024-02-23 14:21:29,839 INFO spawned: 'gunicorn' with pid 78505 +==> /tmp/tmpqrlh6ih1/gravity/log/gunicorn.log <== + +==> /tmp/tmpqrlh6ih1/gravity/log/celery.log <== + +==> /tmp/tmpqrlh6ih1/gravity/log/celery-beat.log <== +Working directory: /scratch/rico/galaxy +Executing: PYTHONPATH=lib GALAXY_CONFIG_FILE=/tmp/tmpqrlh6ih1/galaxy.yml celery --app galaxy.celery beat --loglevel DEBUG --schedule /tmp/tmpqrlh6ih1/gravity/celery-beat-schedule + +==> /tmp/tmpqrlh6ih1/gravity/log/celery.log <== +Working directory: /scratch/rico/galaxy +Executing: PYTHONPATH=lib GALAXY_CONFIG_FILE=/tmp/tmpqrlh6ih1/galaxy.yml celery --app galaxy.celery worker --concurrency 2 --loglevel DEBUG --pool threads --queues celery,galaxy.internal,galaxy.external + +==> /tmp/tmpqrlh6ih1/gravity/log/gunicorn.log <== +Working directory: /scratch/rico/galaxy +Executing: PYTHONPATH=lib GALAXY_CONFIG_FILE=/tmp/tmpqrlh6ih1/galaxy.yml gunicorn 'galaxy.webapps.galaxy.fast_factory:factory()' --timeout 300 --pythonpath lib -k galaxy.webapps.galaxy.workers.Worker -b localhost:9090 --workers=1 --config python:galaxy.web_stack.gunicorn_config --preload + +==> /tmp/tmpqrlh6ih1/gravity/log/celery.log <== +Option master_api_key has been deprecated in favor of bootstrap_admin_api_key +No corresponding location name exists for location code: . + +==> /tmp/tmpqrlh6ih1/gravity/log/celery-beat.log <== +Option master_api_key has been deprecated in favor of bootstrap_admin_api_key +No corresponding location name exists for location code: . + +==> /tmp/tmpqrlh6ih1/gravity/log/gunicorn.log <== +Option master_api_key has been deprecated in favor of bootstrap_admin_api_key +No corresponding location name exists for location code: . +DEBUG:yacman.yacman:Patching yaml loader +DEBUG:yacman.yacman1:Using yacman version 0.9.2 + +==> /tmp/tmpqrlh6ih1/gravity/log/celery.log <== +[2024-02-23 14:21:33,665: DEBUG/MainProcess] | Worker: Preparing bootsteps. +[2024-02-23 14:21:33,667: DEBUG/MainProcess] | Worker: Building graph... +[2024-02-23 14:21:33,668: DEBUG/MainProcess] | Worker: New boot order: {Timer, Hub, Pool, Autoscaler, StateDB, Beat, Consumer} +[2024-02-23 14:21:33,673: DEBUG/MainProcess] | Consumer: Preparing bootsteps. +[2024-02-23 14:21:33,673: DEBUG/MainProcess] | Consumer: Building graph... +[2024-02-23 14:21:33,689: DEBUG/MainProcess] | Consumer: New boot order: {Connection, Events, Mingle, Gossip, Tasks, Control, Agent, Heart, event loop} + + -------------- celery@laila v5.2.7 (dawn-chorus) +--- ***** ----- +-- ******* ---- Linux-4.19.0-26-amd64-x86_64-with-debian-10.13 2024-02-23 14:21:33 +- *** --- * --- +- ** ---------- [config] +- ** ---------- .> app: galaxy:0x7f9f17483748 +- ** ---------- .> transport: sqlalchemy+sqlite:////tmp/tmpqrlh6ih1/galaxy.sqlite +- ** ---------- .> results: disabled:// +- *** --- * --- .> concurrency: 2 (thread) +-- ******* ---- .> task events: OFF (enable -E to monitor tasks in this worker) +--- ***** ----- + -------------- [queues] + .> celery exchange=celery(direct) key=celery + .> galaxy.external exchange=galaxy.external(direct) key=galaxy.external + .> galaxy.internal exchange=galaxy.internal(direct) key=galaxy.internal + +[tasks] + . celery.accumulate + . celery.backend_cleanup + . celery.chain + . celery.chord + . celery.chord_unlock + . celery.chunks + . celery.group + . celery.map + . celery.starmap + . galaxy.change_datatype + . galaxy.clean_object_store_caches + . galaxy.cleanup_expired_notifications + . galaxy.cleanup_short_term_storage + . galaxy.compute_dataset_hash + . galaxy.export_history + . galaxy.fetch_data + . galaxy.finish_job + . galaxy.import_data_bundle + . galaxy.import_model_store + . galaxy.materialize + . galaxy.prepare_dataset_collection_download + . galaxy.prepare_history_content_download + . galaxy.prepare_history_download + . galaxy.prepare_invocation_download + . galaxy.prepare_pdf_download + . galaxy.prune_history_audit_table + . galaxy.purge_datasets + . galaxy.purge_hda + . galaxy.recalculate_user_disk_usage + . galaxy.set_job_metadata + . galaxy.set_metadata + . galaxy.setup_fetch_data + . galaxy.touch + . galaxy.write_history_content_to + . galaxy.write_history_to + . galaxy.write_invocation_to + +[2024-02-23 14:21:33,704: DEBUG/MainProcess] | Worker: Starting Pool +[2024-02-23 14:21:33,704: DEBUG/MainProcess] ^-- substep ok +[2024-02-23 14:21:33,704: DEBUG/MainProcess] | Worker: Starting Consumer +[2024-02-23 14:21:33,704: DEBUG/MainProcess] | Consumer: Starting Connection +[2024-02-23 14:21:33,711: INFO/MainProcess] Connected to sqlalchemy+sqlite:////tmp/tmpqrlh6ih1/galaxy.sqlite +[2024-02-23 14:21:33,712: DEBUG/MainProcess] ^-- substep ok +[2024-02-23 14:21:33,712: DEBUG/MainProcess] | Consumer: Starting Events +[2024-02-23 14:21:33,712: DEBUG/MainProcess] ^-- substep ok +[2024-02-23 14:21:33,712: DEBUG/MainProcess] | Consumer: Starting Tasks +[2024-02-23 14:21:33,762: DEBUG/MainProcess] ^-- substep ok +[2024-02-23 14:21:33,762: DEBUG/MainProcess] | Consumer: Starting Heart +[2024-02-23 14:21:33,762: DEBUG/MainProcess] ^-- substep ok +[2024-02-23 14:21:33,762: DEBUG/MainProcess] | Consumer: Starting event loop +[2024-02-23 14:21:33,762: INFO/MainProcess] celery@laila ready. + +==> /tmp/tmpqrlh6ih1/gravity/log/gunicorn.log <== +DEBUG:galaxy.app:python path is: /scratch/rico/galaxy, /scratch/rico/.planemo/gx_venv_3/bin, /scratch/rico/galaxy/lib, /usr/lib/python37.zip, /usr/lib/python3.7, /usr/lib/python3.7/lib-dynload, /scratch/rico/.planemo/gx_venv_3/lib/python3.7/site-packages +DEBUG:galaxy.config:Configuration directory is /tmp/tmpqrlh6ih1 +DEBUG:galaxy.config:Data directory is /scratch/rico/galaxy/database +DEBUG:galaxy.config:Managed config directory is /tmp/tmpqrlh6ih1 +WARNING:galaxy.config:Option master_api_key has been deprecated in favor of bootstrap_admin_api_key +DEBUG:galaxy.config:No extra version JSON file detected at /scratch/rico/galaxy/version.json +WARNING:galaxy.carbon_emissions:No corresponding location name exists for location code: . +INFO:galaxy.carbon_emissions:Using global default values for location name and carbon intensity... + +==> /tmp/tmpqrlh6ih1/gravity/log/celery-beat.log <== +[2024-02-23 14:21:34,069: DEBUG/MainProcess] Setting default socket timeout to 30 +[2024-02-23 14:21:34,069: INFO/MainProcess] beat: Starting... +[2024-02-23 14:21:34,090: DEBUG/MainProcess] Current schedule: +<ScheduleEntry: cleanup-expired-notifications galaxy.cleanup_expired_notifications() <freq: 1.00 day> +<ScheduleEntry: cleanup-short-term-storage galaxy.cleanup_short_term_storage() <freq: 1.00 hour> +<ScheduleEntry: clean-object-store-caches galaxy.clean_object_store_caches() <freq: 10.00 minutes> +<ScheduleEntry: prune-history-audit-table galaxy.prune_history_audit_table() <freq: 1.00 hour> +<ScheduleEntry: celery.backend_cleanup celery.backend_cleanup() <crontab: 0 4 * * * (m/h/d/dM/MY)> +[2024-02-23 14:21:34,090: DEBUG/MainProcess] beat: Ticking with max interval->5.00 minutes +[2024-02-23 14:21:34,090: DEBUG/MainProcess] beat: Waking up in 5.00 minutes. + +==> /tmp/tmpqrlh6ih1/gravity/log/gunicorn.log <== +INFO:alembic.runtime.migration:Context impl SQLiteImpl. +INFO:alembic.runtime.migration:Will assume non-transactional DDL. +INFO:alembic.runtime.migration:Running stamp_revision -> 8a19186a6ee7 +DEBUG:alembic.runtime.migration:new branch insert 8a19186a6ee7 +INFO:alembic.runtime.migration:Context impl SQLiteImpl. +INFO:alembic.runtime.migration:Will assume non-transactional DDL. +INFO:alembic.runtime.migration:Running stamp_revision -> d4a650f47a3c +DEBUG:alembic.runtime.migration:new branch insert d4a650f47a3c +INFO:galaxy.app:Install database targeting Galaxy's database configuration. +DEBUG:galaxy.web_stack:GunicornApplicationStack initialized +galaxy.jobs DEBUG 2024-02-23 14:21:34,770 [pN:main,p:78505,tN:MainThread] Loading job configuration from /scratch/rico/galaxytools/tools/ncbi_fcs_adaptor/planemo_job_conf.xml +galaxy.jobs DEBUG 2024-02-23 14:21:34,770 [pN:main,p:78505,tN:MainThread] Read job configuration from file: /scratch/rico/galaxytools/tools/ncbi_fcs_adaptor/planemo_job_conf.xml +galaxy.web_stack.handlers INFO 2024-02-23 14:21:34,781 [pN:main,p:78505,tN:MainThread] JobConfiguration: No job handler assignment method is set, defaulting to 'HANDLER_ASSIGNMENT_METHODS.DB_SKIP_LOCKED', set the `assign_with` attribute on <handlers> to override the default +galaxy.jobs INFO 2024-02-23 14:21:34,781 [pN:main,p:78505,tN:MainThread] Job handler assignment methods set to: db-skip-locked +galaxy.web_stack.handlers DEBUG 2024-02-23 14:21:34,781 [pN:main,p:78505,tN:MainThread] default set to child with id or tag 'docker_local' +galaxy.jobs DEBUG 2024-02-23 14:21:34,781 [pN:main,p:78505,tN:MainThread] Done loading job configuration +galaxy.security.vault WARNING 2024-02-23 14:21:34,965 [pN:main,p:78505,tN:MainThread] No vault configured. We recommend defining the vault_config_file setting in galaxy.yml +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,007 [pN:main,p:78505,tN:MainThread] Loading datatypes from /scratch/rico/galaxy/lib/galaxy/config/sample/datatypes_conf.xml.sample +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,008 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension source.h. +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,008 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension source.c. +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,008 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension source.cpp. +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,008 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension source.py. +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,009 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension source.go. +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,009 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension source.rs. +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,009 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension source.cs. +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,009 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:Binary from the datatype registry for extension hep.root. +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,009 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:JP2 from the datatype registry for extension jp2. +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,009 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:Ab1 from the datatype registry for extension ab1. +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,010 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.assembly:Amos from the datatype registry for extension afg. +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,010 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.goldenpath:GoldenPath from the datatype registry for extension agp. +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,011 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.anvio:AnvioComposite from the datatype registry for extension anvio_cog_profile. +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,011 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.anvio:AnvioComposite from the datatype registry for extension anvio_composite. +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,011 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:Data from the datatype registry for extension anvio_classifier. +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,011 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.anvio:AnvioContigsDB from the datatype registry for extension anvio_contigs_db. +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,012 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.anvio:AnvioDB from the datatype registry for extension anvio_db. +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,012 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.anvio:AnvioGenomesDB from the datatype registry for extension anvio_genomes_db. +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,012 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.anvio:AnvioPanDB from the datatype registry for extension anvio_pan_db. +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,012 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.anvio:AnvioComposite from the datatype registry for extension anvio_pfam_profile. +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,012 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.anvio:AnvioProfileDB from the datatype registry for extension anvio_profile_db. +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,012 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.anvio:AnvioSamplesDB from the datatype registry for extension anvio_samples_db. +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,012 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.text:Json from the datatype registry for extension anvio_state. +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,012 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.anvio:AnvioStructureDB from the datatype registry for extension anvio_structure_db. +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,012 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.tabular:TSV from the datatype registry for extension anvio_variability. +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,012 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.text:Arff from the datatype registry for extension arff. +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,013 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.text:Paf from the datatype registry for extension paf. +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,013 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.text:Gfa1 from the datatype registry for extension gfa1. +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,013 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.text:Gfa2 from the datatype registry for extension gfa2. +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,013 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:GenericAsn1 from the datatype registry for extension asn1. +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,013 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:GenericAsn1Binary from the datatype registry for extension asn1-binary. +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,013 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.sequence:Axt from the datatype registry for extension axt. +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,013 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.tabular:FeatureLocationIndex from the datatype registry for extension fli. +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,013 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:Bam from the datatype registry for extension bam. +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,013 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:Binary from the datatype registry for extension bai. +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,013 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:BamInputSorted from the datatype registry for extension qname_input_sorted.bam. +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,014 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:BamQuerynameSorted from the datatype registry for extension qname_sorted.bam. +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,014 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:BamNative from the datatype registry for extension unsorted.bam. +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,014 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:ProBam from the datatype registry for extension probam. +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,014 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:CRAM from the datatype registry for extension cram. +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,014 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.interval:Bed from the datatype registry for extension bed. +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,014 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.interval:BedGraph from the datatype registry for extension bedgraph. +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,014 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.interval:BedStrict from the datatype registry for extension bedstrict. +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,014 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.interval:Bed6 from the datatype registry for extension bed6. +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,014 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.interval:Bed12 from the datatype registry for extension bed12. +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,014 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.interval:ProBed from the datatype registry for extension probed. +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,015 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.chrominfo:ChromInfo from the datatype registry for extension len. +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,015 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:DAA from the datatype registry for extension daa. +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,015 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:RMA6 from the datatype registry for extension rma6. +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,015 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:DMND from the datatype registry for extension dmnd. +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,015 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:Parquet from the datatype registry for extension parquet. +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,015 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:Idat from the datatype registry for extension idat. +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,015 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:BigBed from the datatype registry for extension bigbed. +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,015 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:BigWig from the datatype registry for extension bigwig. +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,015 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:Binary from the datatype registry for extension cxb. +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,016 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.interval:ChromatinInteractions from the datatype registry for extension chrint. +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,016 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.tabular:CSV from the datatype registry for extension csv. +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,016 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.tabular:TSV from the datatype registry for extension tsv. +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,016 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.tabular:TSV from the datatype registry for extension intermine_tabular. +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,016 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.interval:CustomTrack from the datatype registry for extension customtrack. +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,016 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.ngsindex:BowtieColorIndex from the datatype registry for extension bowtie_color_index. +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,017 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.ngsindex:BowtieBaseIndex from the datatype registry for extension bowtie_base_index. +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,017 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.sequence:csFasta from the datatype registry for extension csfasta. +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,017 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:Data from the datatype registry for extension data. +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,017 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:Binary from the datatype registry for extension gz. +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,017 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:Binary from the datatype registry for extension binary. +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,017 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.text:Json from the datatype registry for extension d3_hierarchy. +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,017 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.text:ImgtJson from the datatype registry for extension imgt.json. +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,017 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.text:GeoJson from the datatype registry for extension geojson. +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,017 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.text:Json from the datatype registry for extension data_manager_json. +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,017 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.sequence:DotBracket from the datatype registry for extension dbn. +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,017 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.tabular:Tabular from the datatype registry for extension fai. +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,018 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.sequence:Fasta from the datatype registry for extension fasta. +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,018 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.sequence:Fastg from the datatype registry for extension fastg. +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,018 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.sequence:Fastq from the datatype registry for extension fastq. +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,018 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.sequence:FastqSanger from the datatype registry for extension fastqsanger. +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,018 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.sequence:FastqSolexa from the datatype registry for extension fastqsolexa. +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,019 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.sequence:FastqCSSanger from the datatype registry for extension fastqcssanger. +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,019 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.sequence:FastqIllumina from the datatype registry for extension fastqillumina. +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,019 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.sequence:SequenceSplitLocations from the datatype registry for extension fqtoc. +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,019 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.tabular:Eland from the datatype registry for extension eland. +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,019 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.tabular:ElandMulti from the datatype registry for extension elandmulti. +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,019 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.tracks:GeneTrack from the datatype registry for extension genetrack. +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,019 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.interval:Gff from the datatype registry for extension gff. +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,019 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.interval:Gff3 from the datatype registry for extension gff3. +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,020 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.images:Gif from the datatype registry for extension gif. +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,020 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.images:Gmaj from the datatype registry for extension gmaj.zip. +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,020 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension graph_dot. +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,020 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.interval:Gtf from the datatype registry for extension gtf. +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,020 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:Binary from the datatype registry for extension toolshed.gz. +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,020 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:Binary from the datatype registry for extension hdf4. +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,020 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:H5 from the datatype registry for extension h5. +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,020 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:H5 from the datatype registry for extension scool. +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,020 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:Grib from the datatype registry for extension grib. +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,021 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:Loom from the datatype registry for extension loom. +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,021 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:Anndata from the datatype registry for extension h5ad. +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,021 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:Visium from the datatype registry for extension visium.tar.gz. +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,021 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:H5 from the datatype registry for extension mz5. +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,021 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.text:Json from the datatype registry for extension hyphy_results.json. +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,021 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.text:Json from the datatype registry for extension hivtrace. +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,021 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:Cool from the datatype registry for extension cool. +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,021 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:MCool from the datatype registry for extension mcool. +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,021 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:H5MLM from the datatype registry for extension h5mlm. +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,021 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:LudwigModel from the datatype registry for extension ludwig_model. +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,021 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.text:Html from the datatype registry for extension html. +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,022 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.text:Html from the datatype registry for extension ludwig_report.html. +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,022 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.interval:Interval from the datatype registry for extension interval. +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,022 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:Binary from the datatype registry for extension jellyfish. +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,022 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:Binary from the datatype registry for extension ktab. +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,022 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:Binary from the datatype registry for extension hist. +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,022 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:Binary from the datatype registry for extension prof. +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,103 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.isa:IsaTab from the datatype registry for extension isa-tab. +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,103 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.isa:IsaJson from the datatype registry for extension isa-json. +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,103 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.tabular:Tabular from the datatype registry for extension picard_interval_list. +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,103 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension gatk_interval. +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,103 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension gatk_report. +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,104 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.tabular:Tabular from the datatype registry for extension gatk_dbsnp. +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,104 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.tabular:Tabular from the datatype registry for extension gatk_tranche. +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,104 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.tabular:Tabular from the datatype registry for extension gatk_recal. +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,104 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.tabular:Tabular from the datatype registry for extension cnn. +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,104 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.tabular:Tabular from the datatype registry for extension cns. +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,104 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.tabular:Tabular from the datatype registry for extension cnr. +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,104 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension hhr. +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,105 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.images:Jpg from the datatype registry for extension jpg. +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,105 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.images:Tiff from the datatype registry for extension tiff. +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,105 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.images:Tiff from the datatype registry for extension tf2. +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,105 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.images:Tiff from the datatype registry for extension tf8. +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,105 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.images:Tiff from the datatype registry for extension btf. +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,105 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.images:Tiff from the datatype registry for extension tif. +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,105 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.images:Tiff from the datatype registry for extension svs. +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,105 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.images:Tiff from the datatype registry for extension scn. +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,105 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.images:Tiff from the datatype registry for extension bif. +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,105 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.images:OMETiff from the datatype registry for extension ome.tiff. +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,106 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.images:Hamamatsu from the datatype registry for extension vms. +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,106 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.images:Hamamatsu from the datatype registry for extension vmu. +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,106 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.images:Hamamatsu from the datatype registry for extension ndpi. +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,106 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.images:Mirax from the datatype registry for extension mrxs. +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,106 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.images:Sakura from the datatype registry for extension svslide. +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,106 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.images:Bmp from the datatype registry for extension bmp. +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,106 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.images:Im from the datatype registry for extension im. +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,106 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.images:Pcd from the datatype registry for extension pcd. +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,106 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.images:Pcx from the datatype registry for extension pcx. +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,106 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.images:Ppm from the datatype registry for extension ppm. +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,106 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.images:Psd from the datatype registry for extension psd. +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,106 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.images:Xbm from the datatype registry for extension xbm. +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,106 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.images:Xpm from the datatype registry for extension xpm. +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,106 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.images:Rgb from the datatype registry for extension rgb. +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,107 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.images:Pbm from the datatype registry for extension pbm. +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,107 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.images:Pgm from the datatype registry for extension pgm. +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,107 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.images:Nrrd from the datatype registry for extension nrrd. +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,107 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.images:Nrrd from the datatype registry for extension nhdr. +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,107 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.sequence:RNADotPlotMatrix from the datatype registry for extension rna_eps. +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,108 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.qiime2:QIIME2Artifact from the datatype registry for extension qza. +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,108 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.qiime2:QIIME2Visualization from the datatype registry for extension qzv. +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,108 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.qiime2:QIIME2Metadata from the datatype registry for extension qiime2.tabular. +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,108 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:CompressedZipArchive from the datatype registry for extension zip. +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,108 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:CompressedZipArchive from the datatype registry for extension ncbi_genome_dataset.zip. +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,108 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:CompressedArchive from the datatype registry for extension tar. +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,108 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:Directory from the datatype registry for extension directory. +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,108 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.text:Yaml from the datatype registry for extension yaml. +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,109 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.tabular:Tabular from the datatype registry for extension mrm. +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,111 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.proteomics:Dta from the datatype registry for extension dta. +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,111 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.proteomics:Dta2d from the datatype registry for extension dta2d. +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,111 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.proteomics:Edta from the datatype registry for extension edta. +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,111 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.proteomics:PepXml from the datatype registry for extension pepxml. +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,111 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.proteomics:PepXml from the datatype registry for extension raw_pepxml. +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,111 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.proteomics:PepXml from the datatype registry for extension peptideprophet_pepxml. +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,111 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.proteomics:PepXml from the datatype registry for extension interprophet_pepxml. +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,111 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.proteomics:ProtXML from the datatype registry for extension protxml. +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,112 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.proteomics:ParamXml from the datatype registry for extension paramxml. +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,112 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.proteomics:Kroenik from the datatype registry for extension kroenik. +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,112 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.proteomics:PepList from the datatype registry for extension peplist. +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,112 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.proteomics:PSMS from the datatype registry for extension psms. +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,112 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.proteomics:PepXmlReport from the datatype registry for extension pepxml.tsv. +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,112 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.proteomics:ProtXmlReport from the datatype registry for extension protxml.tsv. +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,112 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.proteomics:MascotDat from the datatype registry for extension mascotdat. +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,112 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.proteomics:MzIdentML from the datatype registry for extension mzid. +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,112 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.proteomics:IdXML from the datatype registry for extension idxml. +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,112 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.proteomics:TandemXML from the datatype registry for extension tandem. +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,112 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension sirius.ms. +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,112 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.proteomics:ThermoRAW from the datatype registry for extension thermo.raw. +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,112 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:BafTar from the datatype registry for extension brukerbaf.d.tar. +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,113 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:YepTar from the datatype registry for extension agilentbrukeryep.d.tar. +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,113 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:TdfTar from the datatype registry for extension brukertdf.d.tar. +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,113 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:MassHunterTar from the datatype registry for extension agilentmasshunter.d.tar. +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,113 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:MassLynxTar from the datatype registry for extension watersmasslynx.raw.tar. +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,113 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:WiffTar from the datatype registry for extension wiff.tar. +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,113 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:Wiff2Tar from the datatype registry for extension wiff2.tar. +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,113 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.proteomics:MascotXML from the datatype registry for extension mascotxml. +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,113 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.proteomics:MzTab from the datatype registry for extension mztab. +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,113 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.proteomics:MzTab2 from the datatype registry for extension mztab2. +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,113 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.proteomics:MzML from the datatype registry for extension mzml. +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,113 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.proteomics:NmrML from the datatype registry for extension nmrml. +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,113 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:Meryldb from the datatype registry for extension meryldb. +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,113 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:Bref3 from the datatype registry for extension bref3. +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,114 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.proteomics:Mgf from the datatype registry for extension mgf. +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,114 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.proteomics:Wiff from the datatype registry for extension wiff. +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,114 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.proteomics:Wiff2 from the datatype registry for extension wiff2. +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,114 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.proteomics:MzXML from the datatype registry for extension mzxml. +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,114 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.proteomics:MzData from the datatype registry for extension mzdata. +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,114 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.proteomics:Ms2 from the datatype registry for extension ms2. +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,114 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.proteomics:MzQuantML from the datatype registry for extension mzq. +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,114 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:SQlite from the datatype registry for extension sqlite. +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,114 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:MzSQlite from the datatype registry for extension mz.sqlite. +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,114 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:OSW from the datatype registry for extension osw. +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,114 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:PQP from the datatype registry for extension pqp. +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,114 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.proteomics:TraML from the datatype registry for extension traml. +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,115 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.proteomics:TrafoXML from the datatype registry for extension trafoxml. +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,115 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.proteomics:FeatureXML from the datatype registry for extension featurexml. +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,115 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.proteomics:ConsensusXML from the datatype registry for extension consensusxml. +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,115 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.proteomics:UniProtXML from the datatype registry for extension uniprotxml. +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,115 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.proteomics:XquestXML from the datatype registry for extension xquest.xml. +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,115 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.proteomics:XquestSpecXML from the datatype registry for extension spec.xml. +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,115 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.proteomics:QCML from the datatype registry for extension qcml. +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,115 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.text:Json from the datatype registry for extension mzqc. +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,115 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.proteomics:Msp from the datatype registry for extension msp. +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,115 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.proteomics:SPLibNoIndex from the datatype registry for extension splib_noindex. +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,115 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.proteomics:SPLib from the datatype registry for extension splib. +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,115 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:BlibSQlite from the datatype registry for extension blib. +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,115 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:DlibSQlite from the datatype registry for extension dlib. +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,116 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:ElibSQlite from the datatype registry for extension elib. +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,116 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.proteomics:XHunterAslFormat from the datatype registry for extension hlf. +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,116 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:IdpDB from the datatype registry for extension idpdb. +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,116 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.proteomics:Sf3 from the datatype registry for extension sf3. +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,116 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:Binary from the datatype registry for extension cps. +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,116 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.tabular:ConnectivityTable from the datatype registry for extension ct. +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,116 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:PostgresqlArchive from the datatype registry for extension postgresql. +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,116 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:MongoDBArchive from the datatype registry for extension mongodb. +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,116 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:GeneNoteBook from the datatype registry for extension genenotebook. +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,116 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:SearchGuiArchive from the datatype registry for extension searchgui_archive. +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,116 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:Fast5Archive from the datatype registry for extension fast5.tar. +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,116 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:Fast5ArchiveGz from the datatype registry for extension fast5.tar.gz. +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,116 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:Fast5ArchiveBz2 from the datatype registry for extension fast5.tar.bz2. +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,117 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:CompressedArchive from the datatype registry for extension peptideshaker_archive. +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,117 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.tabular:Tabular from the datatype registry for extension percin. +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,117 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.xml:GenericXml from the datatype registry for extension percout. +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,117 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.tabular:Tabular from the datatype registry for extension hardklor. +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,117 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.tabular:Tabular from the datatype registry for extension kronik. +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,117 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.proteomics:ImzML from the datatype registry for extension imzml. +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,117 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.images:Analyze75 from the datatype registry for extension analyze75. +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,117 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.images:Nifti1 from the datatype registry for extension nii1. +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,117 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.images:Nifti2 from the datatype registry for extension nii2. +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,118 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.images:Gifti from the datatype registry for extension gii. +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,118 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.images:Tck from the datatype registry for extension tck. +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,118 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.images:Trk from the datatype registry for extension trk. +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,118 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.images:Mrc2014 from the datatype registry for extension mrc. +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,118 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.images:Star from the datatype registry for extension star. +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,118 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.proteomics:PEFF from the datatype registry for extension peff. +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,118 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension toml. +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,118 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.flow:FCS from the datatype registry for extension fcs. +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,119 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.tabular:Tabular from the datatype registry for extension flowtext. +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,119 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.tabular:Tabular from the datatype registry for extension flowclr. +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,119 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.tabular:Tabular from the datatype registry for extension flowmfi. +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,119 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.tabular:Tabular from the datatype registry for extension flowstat1. +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,119 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.tabular:Tabular from the datatype registry for extension flowstat2. +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,119 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.tabular:Tabular from the datatype registry for extension flowstat3. +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,119 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.tabular:Tabular from the datatype registry for extension flowscore. +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,120 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:RData from the datatype registry for extension flowframe. +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,120 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:RData from the datatype registry for extension fsom. +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,120 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:RData from the datatype registry for extension flowset. +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,120 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.tabular:Tabular from the datatype registry for extension metacyto_clr.txt. +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,120 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.metacyto:mSummary from the datatype registry for extension metacyto_summary.txt. +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,120 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.metacyto:mStats from the datatype registry for extension metacyto_stats.txt. +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,120 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:CompressedArchive from the datatype registry for extension deeptools_compute_matrix_archive. +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,121 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:CompressedArchive from the datatype registry for extension deeptools_coverage_matrix. +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,121 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:NetCDF from the datatype registry for extension netcdf. +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,121 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.images:Eps from the datatype registry for extension eps. +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,121 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.images:Rast from the datatype registry for extension rast. +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,121 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.images:Laj from the datatype registry for extension laj. +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,121 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.sequence:Lav from the datatype registry for extension lav. +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,121 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.sequence:Maf from the datatype registry for extension maf. +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,121 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.sequence:MafCustomTrack from the datatype registry for extension mafcustomtrack. +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,121 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.tabular:MatrixMarket from the datatype registry for extension mtx. +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,121 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.tabular:CMAP from the datatype registry for extension cmap. +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,121 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.interval:ENCODEPeak from the datatype registry for extension encodepeak. +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,122 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.images:Pdf from the datatype registry for extension pdf. +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,122 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.tabular:Pileup from the datatype registry for extension pileup. +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,122 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.tabular:Psl from the datatype registry for extension psl. +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,122 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.text:Obo from the datatype registry for extension obo. +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,122 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.xml:Owl from the datatype registry for extension owl. +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,122 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.images:Png from the datatype registry for extension png. +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,122 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.qualityscore:QualityScore from the datatype registry for extension qual. +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,122 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.qualityscore:QualityScoreSolexa from the datatype registry for extension qualsolexa. +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,122 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.qualityscore:QualityScoreIllumina from the datatype registry for extension qualillumina. +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,122 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.qualityscore:QualityScoreSOLiD from the datatype registry for extension qualsolid. +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,122 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.qualityscore:QualityScore454 from the datatype registry for extension qual454. +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,122 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.assembly:Roadmaps from the datatype registry for extension roadmaps. +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,122 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.tabular:Sam from the datatype registry for extension sam. +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,123 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:Scf from the datatype registry for extension scf. +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,123 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.assembly:Sequences from the datatype registry for extension sequences. +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,123 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.text:SnpEffDb from the datatype registry for extension snpeffdb. +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,123 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.text:SnpSiftDbNSFP from the datatype registry for extension snpsiftdbnsfp. +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,123 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.tabular:Tabular from the datatype registry for extension dbnsfp.tabular. +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,123 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:Sff from the datatype registry for extension sff. +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,123 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:Sra from the datatype registry for extension sra. +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,123 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.tabular:SraManifest from the datatype registry for extension sra_manifest.tabular. +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,123 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.xml:GenericXml from the datatype registry for extension svg. +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,123 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.tabular:Taxonomy from the datatype registry for extension taxonomy. +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,123 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.tabular:Tabular from the datatype registry for extension tabular. +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,124 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:TwoBit from the datatype registry for extension twobit. +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,124 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:SQmass from the datatype registry for extension sqmass. +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,124 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:GeminiSQLite from the datatype registry for extension gemini.sqlite. +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,124 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:ChiraSQLite from the datatype registry for extension chira.sqlite. +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,124 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:CuffDiffSQlite from the datatype registry for extension cuffdiff.sqlite. +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,124 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:GAFASQLite from the datatype registry for extension gafa.sqlite. +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,124 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:NcbiTaxonomySQlite from the datatype registry for extension ncbitaxonomy.sqlite. +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,124 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension txt. +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,124 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:LineCount from the datatype registry for extension linecount. +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,124 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.sequence:MemePsp from the datatype registry for extension memepsp. +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,124 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.xml:MEMEXml from the datatype registry for extension memexml. +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,124 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.xml:CisML from the datatype registry for extension cisml. +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,125 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.xml:GenericXml from the datatype registry for extension xml. +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,125 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.xml:GenericXml from the datatype registry for extension xsd. +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,125 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.xml:Dzi from the datatype registry for extension dzi. +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,125 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.tabular:Vcf from the datatype registry for extension vcf. +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,125 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:Bcf from the datatype registry for extension bcf. +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,125 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:Bcf from the datatype registry for extension bcf_bgzip. +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,126 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:BcfUncompressed from the datatype registry for extension bcf_uncompressed. +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,126 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.assembly:Velvet from the datatype registry for extension velvet. +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,126 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.interval:Wiggle from the datatype registry for extension wig. +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,126 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:Binary from the datatype registry for extension interval_index. +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,127 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:Binary from the datatype registry for extension odgi. +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,127 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:CompressedArchive from the datatype registry for extension vg. +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,127 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:Binary from the datatype registry for extension xg. +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,127 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:Binary from the datatype registry for extension protobuf2. +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,127 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:Binary from the datatype registry for extension protobuf3. +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,127 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:Binary from the datatype registry for extension onnx. +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,127 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:Binary from the datatype registry for extension tabix. +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,127 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.interval:IntervalTabix from the datatype registry for extension interval_tabix.gz. +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,127 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.interval:JuicerMediumTabix from the datatype registry for extension juicer_medium_tabix.gz. +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,127 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.interval:BedTabix from the datatype registry for extension bed_tabix.gz. +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,128 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.interval:GffTabix from the datatype registry for extension gff_tabix.gz. +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,128 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:Binary from the datatype registry for extension bgzip. +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,128 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.tabular:VcfGz from the datatype registry for extension vcf_bgzip. +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,128 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:Binary from the datatype registry for extension bus. +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,128 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:Binary from the datatype registry for extension kallisto.idx. +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,128 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.xml:Phyloxml from the datatype registry for extension phyloxml. +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,128 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:Newick from the datatype registry for extension newick. +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,128 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:Newick from the datatype registry for extension nhx. +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,128 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:Nexus from the datatype registry for extension nex. +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,128 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.text:IQTree from the datatype registry for extension iqtree. +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,130 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.mothur:SquareDistanceMatrix from the datatype registry for extension mldist. +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,132 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.genetics:Affybatch from the datatype registry for extension affybatch. +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,133 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.genetics:Eigenstratgeno from the datatype registry for extension eigenstratgeno. +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,133 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.genetics:Eigenstratpca from the datatype registry for extension eigenstratpca. +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,133 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.genetics:Eset from the datatype registry for extension eset. +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,133 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.genetics:Fped from the datatype registry for extension fped. +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,133 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.genetics:Fphe from the datatype registry for extension fphe. +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,133 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.genetics:GenomeGraphs from the datatype registry for extension gg. +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,133 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.genetics:ldIndep from the datatype registry for extension ldindep. +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,133 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.genetics:MAlist from the datatype registry for extension malist. +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,133 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.genetics:Lped from the datatype registry for extension lped. +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,133 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.genetics:Pbed from the datatype registry for extension pbed. +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,134 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.genetics:Pheno from the datatype registry for extension pheno. +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,134 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.genetics:Pphe from the datatype registry for extension pphe. +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,134 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.genetics:RexpBase from the datatype registry for extension rexpbase. +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,134 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.genetics:Rgenetics from the datatype registry for extension rgenetics. +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,134 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.genetics:Snptest from the datatype registry for extension snptest. +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,134 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.genetics:SNPMatrix from the datatype registry for extension snpmatrix. +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,134 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:ExcelXls from the datatype registry for extension xls. +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,134 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.text:Ipynb from the datatype registry for extension ipynb. +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,134 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.text:Json from the datatype registry for extension json. +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,134 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.text:ExpressionJson from the datatype registry for extension expression.json. +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,135 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.graph:Xgmml from the datatype registry for extension xgmml. +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,135 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.graph:Sif from the datatype registry for extension sif. +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,136 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.triples:Triples from the datatype registry for extension triples. +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,136 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.triples:HDT from the datatype registry for extension hdt. +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,136 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.triples:NTriples from the datatype registry for extension nt. +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,136 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.triples:N3 from the datatype registry for extension n3. +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,136 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.triples:Turtle from the datatype registry for extension ttl. +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,137 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.triples:Rdf from the datatype registry for extension rdf. +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,137 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.triples:Jsonld from the datatype registry for extension jsonld. +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,137 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:ExcelXls from the datatype registry for extension excel.xls. +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,137 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:Xlsx from the datatype registry for extension xlsx. +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,137 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:Binary from the datatype registry for extension docx. +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,137 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension btwisted. +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,137 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension cai. +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,137 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension cat_db. +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,137 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension charge. +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,138 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension checktrans. +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,138 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension chips. +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,138 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension codcmp. +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,138 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension coderet. +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,138 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension compseq. +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,138 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension cpgplot. +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,138 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension cpgreport. +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,138 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension cusp. +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,138 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension cut. +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,138 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension dan. +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,138 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension digest. +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,139 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension dreg. +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,139 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension einverted. +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,139 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension epestfind. +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,139 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension equicktandem. +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,139 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension est2genome. +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,139 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension etandem. +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,139 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension freak. +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,139 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension fuzznuc. +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,139 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension fuzzpro. +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,139 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension fuzztran. +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,139 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension garnier. +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,140 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension geecee. +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,140 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension helixturnhelix. +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,140 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension hmoment. +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,140 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension isochore. +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,140 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension match. +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,140 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension nametable. +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,140 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension needle. +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,140 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension newcpgreport. +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,140 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension newcpgseek. +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,140 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension noreturn. +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,140 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension palindrome. +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,141 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension pepcoil. +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,141 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension pepinfo. +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,141 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension pepstats. +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,141 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension polydot. +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,141 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension preg. +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,141 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension prettyseq. +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,141 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension primersearch. +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,141 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension showfeat. +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,141 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension showorf. +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,141 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension sixpack. +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,141 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension strider. +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,142 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension supermatcher. +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,142 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension syco. +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,142 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension textsearch. +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,142 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension vectorstrip. +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,142 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension wobble. +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,142 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension wordcount. +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,142 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension dbmotif. +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,142 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension diffseq. +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,142 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension excel. +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,142 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension feattable. +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,142 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension motif. +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,143 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension regions. +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,143 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension seqtable. +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,143 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension simple. +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,143 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension table. +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,143 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension tagseq. +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,143 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension acedb. +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,143 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension clustal. +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,143 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension codata. +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,143 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension embl. +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,143 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension fitch. +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,143 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension gcg. +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,144 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.sequence:Genbank from the datatype registry for extension genbank. +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,144 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension hennig86. +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,144 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension ig. +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,144 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension jackknifer. +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,144 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension jackknifernon. +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,144 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension mega. +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,144 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension meganon. +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,144 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension ncbi. +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,144 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension nexus. +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,144 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension nexusnon. +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,145 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.phylip:Phylip from the datatype registry for extension phylip. +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,145 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension phylipnon. +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,145 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension pir. +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,145 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension staden. +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,145 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension swiss. +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,146 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.msa:Msf from the datatype registry for extension msf. +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,146 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension markx0. +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,147 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension markx1. +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,147 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension markx10. +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,147 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension markx2. +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,147 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension markx3. +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,147 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension pair. +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,147 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension score. +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,147 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension srs. +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,147 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension srspair. +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,148 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.annotation:SnapHmm from the datatype registry for extension snaphmm. +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,148 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.annotation:Augustus from the datatype registry for extension augustus. +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,148 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:ICM from the datatype registry for extension icm. +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,148 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.msa:InfernalCM from the datatype registry for extension cm. +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,148 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.msa:Hmmer2 from the datatype registry for extension hmm2. +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,148 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.msa:Hmmer3 from the datatype registry for extension hmm3. +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,148 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.msa:Stockholm_1_0 from the datatype registry for extension stockholm. +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,148 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.msa:MauveXmfa from the datatype registry for extension xmfa. +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,149 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.microarrays:Cel from the datatype registry for extension cel. +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,149 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.microarrays:Gpr from the datatype registry for extension gpr. +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,149 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.microarrays:Gal from the datatype registry for extension gal. +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,149 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:RDS from the datatype registry for extension rds. +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,149 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:RDS from the datatype registry for extension phyloseq. +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,149 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:RData from the datatype registry for extension rdata. +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,149 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:RData from the datatype registry for extension rdata.sce. +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,149 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:RData from the datatype registry for extension rdata.xcms.raw. +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,150 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:RData from the datatype registry for extension rdata.msnbase.raw. +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,150 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:RData from the datatype registry for extension rdata.xcms.findchrompeaks. +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,150 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:RData from the datatype registry for extension rdata.xcms.group. +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,150 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:RData from the datatype registry for extension rdata.xcms.retcor. +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,150 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:RData from the datatype registry for extension rdata.xcms.fillpeaks. +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,150 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:RData from the datatype registry for extension rdata.camera.positive. +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,150 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:RData from the datatype registry for extension rdata.camera.negative. +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,150 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:RData from the datatype registry for extension rdata.camera.quick. +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,151 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.hdf5:HDF5SummarizedExperiment from the datatype registry for extension rdata.se. +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,151 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:Binary from the datatype registry for extension rdock_as. +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,151 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:OxliCountGraph from the datatype registry for extension oxlicg. +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,151 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:OxliNodeGraph from the datatype registry for extension oxling. +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,151 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:OxliTagSet from the datatype registry for extension oxlits. +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,151 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:OxliStopTags from the datatype registry for extension oxlist. +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,151 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:OxliSubset from the datatype registry for extension oxliss. +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,151 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:OxliGraphLabels from the datatype registry for extension oxligl. +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,152 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.constructive_solid_geometry:STL from the datatype registry for extension stl. +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,153 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.constructive_solid_geometry:PlyAscii from the datatype registry for extension plyascii. +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,153 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.constructive_solid_geometry:PlyBinary from the datatype registry for extension plybinary. +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,153 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.constructive_solid_geometry:VtkAscii from the datatype registry for extension vtkascii. +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,153 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.constructive_solid_geometry:VtkBinary from the datatype registry for extension vtkbinary. +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,153 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.text:Biom1 from the datatype registry for extension biom1. +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,153 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:Biom2 from the datatype registry for extension biom2. +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,153 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:MashSketch from the datatype registry for extension msh. +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,153 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.interval:ScIdx from the datatype registry for extension scidx. +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,155 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.molecules:SMILES from the datatype registry for extension smi. +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,155 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.molecules:SDF from the datatype registry for extension sdf. +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,155 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.molecules:InChI from the datatype registry for extension inchi. +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,155 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.molecules:MOL from the datatype registry for extension mol. +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,156 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.molecules:MOL2 from the datatype registry for extension mol2. +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,156 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.molecules:CML from the datatype registry for extension cml. +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,156 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.molecules:FPS from the datatype registry for extension fps. +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,156 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.molecules:OBFS from the datatype registry for extension obfs. +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,156 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.molecules:DRF from the datatype registry for extension drf. +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,156 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.molecules:PHAR from the datatype registry for extension phar. +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,156 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.molecules:PDB from the datatype registry for extension pdb. +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,156 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.molecules:PDBQT from the datatype registry for extension pdbqt. +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,156 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.molecules:PQR from the datatype registry for extension pqr. +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,156 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.molecules:Cell from the datatype registry for extension cell. +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,156 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.molecules:CIF from the datatype registry for extension cif. +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,157 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.molecules:XYZ from the datatype registry for extension xyz. +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,157 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.molecules:ExtendedXYZ from the datatype registry for extension extxyz. +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,157 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:Trr from the datatype registry for extension trr. +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,157 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:Dcd from the datatype registry for extension dcd. +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,157 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension top. +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,157 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension prmtop. +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,157 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension itp. +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,157 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension mdp. +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,157 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension ndx. +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,157 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension xvg. +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,157 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:Xtc from the datatype registry for extension xtc. +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,158 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:Cpt from the datatype registry for extension cpt. +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,158 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:Edr from the datatype registry for extension edr. +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,158 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:Binary from the datatype registry for extension tpr. +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,158 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.molecules:GRO from the datatype registry for extension gro. +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,158 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension inpcrd. +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,158 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:Vel from the datatype registry for extension vel. +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,158 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.molecules:grd from the datatype registry for extension grd. +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,158 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.molecules:grdtgz from the datatype registry for extension grd.tgz. +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,158 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.mothur:Otu from the datatype registry for extension mothur.otu. +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,158 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.mothur:Otu from the datatype registry for extension mothur.list. +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,159 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.mothur:Sabund from the datatype registry for extension mothur.sabund. +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,159 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.mothur:Sabund from the datatype registry for extension mothur.rabund. +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,159 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.mothur:GroupAbund from the datatype registry for extension mothur.shared. +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,159 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.mothur:GroupAbund from the datatype registry for extension mothur.relabund. +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,159 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.mothur:Names from the datatype registry for extension mothur.names. +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,159 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.mothur:Group from the datatype registry for extension mothur.design. +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,159 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.mothur:Summary from the datatype registry for extension mothur.summary. +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,159 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.mothur:Group from the datatype registry for extension mothur.groups. +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,159 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.mothur:Oligos from the datatype registry for extension mothur.oligos. +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,159 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.sequence:Fasta from the datatype registry for extension mothur.align. +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,159 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.mothur:AccNos from the datatype registry for extension mothur.accnos. +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,160 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.mothur:AccNos from the datatype registry for extension mothur.otulabels. +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,160 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.tabular:Tabular from the datatype registry for extension mothur.otu.corr. +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,160 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.mothur:SecondaryStructureMap from the datatype registry for extension mothur.map. +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,160 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.mothur:AlignCheck from the datatype registry for extension mothur.align.check. +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,160 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.mothur:AlignReport from the datatype registry for extension mothur.align.report. +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,160 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.mothur:LaneMask from the datatype registry for extension mothur.filter. +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,160 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.mothur:DistanceMatrix from the datatype registry for extension mothur.dist. +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,160 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension mothur.tre. +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,160 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.mothur:PairwiseDistanceMatrix from the datatype registry for extension mothur.pair.dist. +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,160 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.mothur:SquareDistanceMatrix from the datatype registry for extension mothur.square.dist. +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,160 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.mothur:LowerTriangleDistanceMatrix from the datatype registry for extension mothur.lower.dist. +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,160 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.mothur:RefTaxonomy from the datatype registry for extension mothur.ref.taxonomy. +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,161 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.mothur:RefTaxonomy from the datatype registry for extension mothur.seq.taxonomy. +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,161 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.mothur:RefTaxonomy from the datatype registry for extension mothur.rdp.taxonomy. +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,161 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.mothur:ConsensusTaxonomy from the datatype registry for extension mothur.cons.taxonomy. +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,161 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.mothur:TaxonomySummary from the datatype registry for extension mothur.tax.summary. +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,161 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.mothur:Frequency from the datatype registry for extension mothur.freq. +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,161 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.mothur:Quantile from the datatype registry for extension mothur.quan. +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,161 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.mothur:Quantile from the datatype registry for extension mothur.filtered.quan. +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,161 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.mothur:Quantile from the datatype registry for extension mothur.masked.quan. +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,161 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.mothur:Quantile from the datatype registry for extension mothur.filtered.masked.quan. +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,161 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.mothur:Axes from the datatype registry for extension mothur.axes. +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,162 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.mothur:SffFlow from the datatype registry for extension mothur.sff.flow. +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,162 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.mothur:CountTable from the datatype registry for extension mothur.count_table. +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,162 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.neo4j:Neo4jDB from the datatype registry for extension neostore. +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,162 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.neo4j:Neo4jDBzip from the datatype registry for extension neostore.zip. +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,162 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.tracks:UCSCTrackHub from the datatype registry for extension trackhub. +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,163 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.blast:BlastXml from the datatype registry for extension blastxml. +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,163 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.blast:BlastNucDb from the datatype registry for extension blastdbn. +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,163 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.blast:BlastProtDb from the datatype registry for extension blastdbp. +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,164 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.blast:BlastDomainDb from the datatype registry for extension blastdbd. +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,164 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.blast:LastDb from the datatype registry for extension lastdb. +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,164 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.blast:BlastNucDb5 from the datatype registry for extension blastdbn5. +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,164 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.blast:BlastProtDb5 from the datatype registry for extension blastdbp5. +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,164 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.blast:BlastDomainDb5 from the datatype registry for extension blastdbd5. +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,164 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:GenericAsn1 from the datatype registry for extension maskinfo-asn1. +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,164 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:GenericAsn1Binary from the datatype registry for extension maskinfo-asn1-binary. +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,164 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:GenericAsn1 from the datatype registry for extension pssm-asn1. +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,165 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.plant_tribes:PlantTribesKsComponents from the datatype registry for extension ptkscmp. +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,165 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.plant_tribes:Smat from the datatype registry for extension smat. +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,165 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.genetics:GenotypeMatrix from the datatype registry for extension alohomora_gts. +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,165 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.tabular:Tabular from the datatype registry for extension alohomora_map. +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,165 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.tabular:Tabular from the datatype registry for extension alohomora_maf. +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,165 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.tabular:Tabular from the datatype registry for extension alohomora_ped. +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,165 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.tabular:Tabular from the datatype registry for extension linkage_pedin. +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,166 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.genetics:DataIn from the datatype registry for extension linkage_datain. +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,166 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.genetics:MarkerMap from the datatype registry for extension linkage_map. +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,166 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.tabular:Tabular from the datatype registry for extension allegro_ihaplo. +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,166 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.tabular:Tabular from the datatype registry for extension allegro_descent. +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,166 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.genetics:AllegroLOD from the datatype registry for extension allegro_fparam. +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,166 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.genetics:IdeasPre from the datatype registry for extension ideaspre. +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,166 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.xml:Sbml from the datatype registry for extension sbml. +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,167 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.spaln:SpalnNuclDb from the datatype registry for extension spalndbnp. +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,168 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.spaln:SpalnProtDb from the datatype registry for extension spalndba. +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,168 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:RDS from the datatype registry for extension dada2_dada. +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,168 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:RDS from the datatype registry for extension dada2_errorrates. +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,168 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:RDS from the datatype registry for extension dada2_mergepairs. +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,168 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.tabular:Tabular from the datatype registry for extension dada2_sequencetable. +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,168 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.tabular:Tabular from the datatype registry for extension dada2_uniques. +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,168 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:RDS from the datatype registry for extension ampvis2. +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,169 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:Binary from the datatype registry for extension ckpt. +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,169 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:Binary from the datatype registry for extension tgz. +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,171 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.media:Wav from the datatype registry for extension wav. +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,171 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.media:Mp3 from the datatype registry for extension mp3. +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,172 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.media:Mkv from the datatype registry for extension mkv. +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,172 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.media:Mp4 from the datatype registry for extension mp4. +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,172 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.media:Flv from the datatype registry for extension flv. +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,172 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.media:Mpg from the datatype registry for extension mpg. +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,172 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.speech:TextGrid from the datatype registry for extension textgrid. +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,172 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.speech:BPF from the datatype registry for extension par. +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,172 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.tabular:Tabular from the datatype registry for extension ffindex. +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,172 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:Data from the datatype registry for extension ffdata. +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,173 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:Pretext from the datatype registry for extension pretext. +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,173 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.text:Html from the datatype registry for extension immuneml_receptors.html. +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,173 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:HexrdMaterials from the datatype registry for extension hexrd.materials.h5. +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,173 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:Npz from the datatype registry for extension npz. +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,173 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:HexrdImagesNpz from the datatype registry for extension hexrd.images.npz. +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,173 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:HexrdEtaOmeNpz from the datatype registry for extension hexrd.eta_ome.npz. +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,173 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:Npz from the datatype registry for extension hexrd.scored_orientations.npz. +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,173 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.tabular:Tabular from the datatype registry for extension hexrd.accepted_orientations. +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,173 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.text:Yaml from the datatype registry for extension hexrd.yml. +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,173 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.constructive_solid_geometry:NeperTess from the datatype registry for extension neper.tess. +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,174 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.constructive_solid_geometry:NeperTesr from the datatype registry for extension neper.tesr. +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,174 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.constructive_solid_geometry:NeperPoints from the datatype registry for extension neper.points. +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,174 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.constructive_solid_geometry:NeperPointsTabular from the datatype registry for extension neper.points.tsv. +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,174 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.constructive_solid_geometry:NeperMultiScaleCell from the datatype registry for extension neper.mscell. +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,174 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.constructive_solid_geometry:GmshMsh from the datatype registry for extension gmsh.msh. +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,174 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.constructive_solid_geometry:GmshGeo from the datatype registry for extension gmsh.geo. +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,174 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.constructive_solid_geometry:ZsetGeof from the datatype registry for extension zset.geof. +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,174 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:Binary from the datatype registry for extension stl. +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,174 [pN:main,p:78505,tN:MainThread] Overriding conflicting datatype with extension 'stl', using datatype from /scratch/rico/galaxy/lib/galaxy/config/sample/datatypes_conf.xml.sample. +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,174 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.text:Text from the datatype registry for extension pov. +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,174 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.text:PithyaResult from the datatype registry for extension pithya.result. +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,174 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.text:PithyaProperty from the datatype registry for extension pithya.property. +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,174 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.text:PithyaModel from the datatype registry for extension pithya.model. +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,175 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.text:BCSLts from the datatype registry for extension bcsl.ts. +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,175 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.text:BCSLmodel from the datatype registry for extension bcsl.model. +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,175 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.text:StormSample from the datatype registry for extension storm.sample. +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,175 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.text:StormCheck from the datatype registry for extension storm.check. +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,175 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.text:CTLresult from the datatype registry for extension ctl.result. +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,175 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.text:Castep from the datatype registry for extension castep. +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,175 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.text:Param from the datatype registry for extension param. +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,175 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.text:FormattedDensity from the datatype registry for extension den_fmt. +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,176 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.larch:AthenaProject from the datatype registry for extension prj. +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,176 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.larch:FEFFInput from the datatype registry for extension inp. +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,176 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.tabular:CSV from the datatype registry for extension sp. +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,176 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.tabular:CSV from the datatype registry for extension gds. +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,176 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.tabular:CSV from the datatype registry for extension feff. +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,176 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension feffit. +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,176 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:Binary from the datatype registry for extension bil. +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,176 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension hdr. +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,177 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.gis:Shapefile from the datatype registry for extension shp. +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,177 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:FITS from the datatype registry for extension fits. +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,177 [pN:main,p:78505,tN:MainThread] Retrieved datatype module galaxy.datatypes.chain:Chain from the datatype registry for extension chain. +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,177 [pN:main,p:78505,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.plant_tribes:PlantTribesKsComponents' +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,178 [pN:main,p:78505,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.plant_tribes:Smat' +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,178 [pN:main,p:78505,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.mothur:Sabund' +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,178 [pN:main,p:78505,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.mothur:Otu' +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,178 [pN:main,p:78505,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.mothur:GroupAbund' +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,178 [pN:main,p:78505,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.mothur:SecondaryStructureMap' +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,178 [pN:main,p:78505,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.mothur:LowerTriangleDistanceMatrix' +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,178 [pN:main,p:78505,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.mothur:SquareDistanceMatrix' +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,178 [pN:main,p:78505,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.mothur:PairwiseDistanceMatrix' +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,178 [pN:main,p:78505,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.mothur:Oligos' +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,178 [pN:main,p:78505,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.mothur:Quantile' +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,178 [pN:main,p:78505,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.mothur:Frequency' +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,178 [pN:main,p:78505,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.mothur:LaneMask' +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,178 [pN:main,p:78505,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.mothur:RefTaxonomy' +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,178 [pN:main,p:78505,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.mothur:Axes' +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,178 [pN:main,p:78505,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.constructive_solid_geometry:PlyAscii' +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,178 [pN:main,p:78505,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.constructive_solid_geometry:PlyBinary' +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,178 [pN:main,p:78505,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.constructive_solid_geometry:VtkAscii' +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,178 [pN:main,p:78505,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.constructive_solid_geometry:VtkBinary' +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,178 [pN:main,p:78505,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.constructive_solid_geometry:NeperTess' +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,178 [pN:main,p:78505,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.constructive_solid_geometry:NeperTesr' +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,178 [pN:main,p:78505,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.constructive_solid_geometry:GmshMsh' +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,178 [pN:main,p:78505,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.goldenpath:GoldenPath' +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,179 [pN:main,p:78505,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.interval:ScIdx' +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,179 [pN:main,p:78505,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.tabular:Vcf' +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,179 [pN:main,p:78505,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.binary:JP2' +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,179 [pN:main,p:78505,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.binary:TwoBit' +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,179 [pN:main,p:78505,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.binary:GeminiSQLite' +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,179 [pN:main,p:78505,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.binary:SQmass' +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,179 [pN:main,p:78505,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.binary:MzSQlite' +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,179 [pN:main,p:78505,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.binary:OSW' +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,179 [pN:main,p:78505,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.binary:PQP' +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,179 [pN:main,p:78505,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.binary:IdpDB' +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,179 [pN:main,p:78505,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.binary:ElibSQlite' +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,179 [pN:main,p:78505,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.binary:DlibSQlite' +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,179 [pN:main,p:78505,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.binary:BlibSQlite' +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,179 [pN:main,p:78505,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.binary:ChiraSQLite' +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,179 [pN:main,p:78505,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.binary:CuffDiffSQlite' +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,179 [pN:main,p:78505,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.binary:GAFASQLite' +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,179 [pN:main,p:78505,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.binary:NcbiTaxonomySQlite' +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,179 [pN:main,p:78505,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.binary:SQlite' +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,179 [pN:main,p:78505,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.binary:H5MLM' +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,179 [pN:main,p:78505,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.binary:Cool' +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,179 [pN:main,p:78505,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.binary:MCool' +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,179 [pN:main,p:78505,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.binary:Loom' +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,179 [pN:main,p:78505,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.binary:Anndata' +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,179 [pN:main,p:78505,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.binary:Biom2' +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,180 [pN:main,p:78505,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.binary:HexrdMaterials' +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,180 [pN:main,p:78505,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.binary:H5' +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,180 [pN:main,p:78505,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.binary:Grib' +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,180 [pN:main,p:78505,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.binary:HexrdImagesNpz' +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,180 [pN:main,p:78505,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.binary:HexrdEtaOmeNpz' +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,180 [pN:main,p:78505,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.binary:Npz' +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,180 [pN:main,p:78505,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.binary:Bam' +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,180 [pN:main,p:78505,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.binary:BamQuerynameSorted' +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,180 [pN:main,p:78505,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.binary:BamNative' +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,180 [pN:main,p:78505,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.binary:CRAM' +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,180 [pN:main,p:78505,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.binary:Sff' +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,180 [pN:main,p:78505,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.binary:Sra' +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,180 [pN:main,p:78505,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.binary:NetCDF' +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,180 [pN:main,p:78505,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.binary:DAA' +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,180 [pN:main,p:78505,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.binary:RMA6' +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,180 [pN:main,p:78505,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.binary:DMND' +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,180 [pN:main,p:78505,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.binary:Parquet' +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,180 [pN:main,p:78505,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.binary:BafTar' +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,180 [pN:main,p:78505,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.binary:TdfTar' +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,180 [pN:main,p:78505,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.binary:MassHunterTar' +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,180 [pN:main,p:78505,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.binary:MassLynxTar' +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,180 [pN:main,p:78505,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.binary:YepTar' +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,180 [pN:main,p:78505,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.binary:WiffTar' +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,180 [pN:main,p:78505,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.binary:Fast5ArchiveGz' +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,181 [pN:main,p:78505,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.binary:Fast5ArchiveBz2' +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,181 [pN:main,p:78505,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.binary:Fast5Archive' +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,181 [pN:main,p:78505,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.binary:Meryldb' +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,181 [pN:main,p:78505,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.binary:Bref3' +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,181 [pN:main,p:78505,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.binary:PostgresqlArchive' +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,181 [pN:main,p:78505,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.binary:ICM' +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,181 [pN:main,p:78505,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.binary:Idat' +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,181 [pN:main,p:78505,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.binary:Trr' +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,181 [pN:main,p:78505,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.binary:Dcd' +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,181 [pN:main,p:78505,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.binary:Xtc' +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,181 [pN:main,p:78505,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.binary:Cpt' +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,181 [pN:main,p:78505,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.binary:Edr' +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,181 [pN:main,p:78505,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.binary:Vel' +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,181 [pN:main,p:78505,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.binary:Xlsx' +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,181 [pN:main,p:78505,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.qiime2:QIIME2Metadata' +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,181 [pN:main,p:78505,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.qiime2:QIIME2Artifact' +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,181 [pN:main,p:78505,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.qiime2:QIIME2Visualization' +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,181 [pN:main,p:78505,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.binary:CompressedZipArchive' +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,181 [pN:main,p:78505,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.binary:Pretext' +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,181 [pN:main,p:78505,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.annotation:Augustus' +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,181 [pN:main,p:78505,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.xml:Owl' +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,182 [pN:main,p:78505,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.chain:Chain' +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,182 [pN:main,p:78505,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.triples:Rdf' +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,182 [pN:main,p:78505,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.blast:BlastXml' +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,182 [pN:main,p:78505,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.images:Gifti' +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,182 [pN:main,p:78505,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.xml:Phyloxml' +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,182 [pN:main,p:78505,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.xml:Dzi' +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,182 [pN:main,p:78505,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.xml:Sbml' +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,182 [pN:main,p:78505,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.proteomics:Dta2d' +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,182 [pN:main,p:78505,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.proteomics:Edta' +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,182 [pN:main,p:78505,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.proteomics:ConsensusXML' +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,182 [pN:main,p:78505,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.proteomics:IdXML' +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,182 [pN:main,p:78505,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.proteomics:FeatureXML' +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,182 [pN:main,p:78505,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.proteomics:MascotXML' +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,182 [pN:main,p:78505,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.proteomics:Mgf' +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,182 [pN:main,p:78505,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.proteomics:Ms2' +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,182 [pN:main,p:78505,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.proteomics:Msp' +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,182 [pN:main,p:78505,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.proteomics:MzData' +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,182 [pN:main,p:78505,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.proteomics:MzIdentML' +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,182 [pN:main,p:78505,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.proteomics:MzML' +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,182 [pN:main,p:78505,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.proteomics:MzQuantML' +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,182 [pN:main,p:78505,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.proteomics:MzTab' +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,183 [pN:main,p:78505,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.proteomics:MzTab2' +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,183 [pN:main,p:78505,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.proteomics:ParamXml' +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,183 [pN:main,p:78505,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.proteomics:MzXML' +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,183 [pN:main,p:78505,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.proteomics:NmrML' +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,183 [pN:main,p:78505,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.proteomics:Kroenik' +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,183 [pN:main,p:78505,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.proteomics:PepList' +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,183 [pN:main,p:78505,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.proteomics:PSMS' +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,183 [pN:main,p:78505,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.proteomics:PepXml' +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,183 [pN:main,p:78505,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.proteomics:ProtXML' +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,183 [pN:main,p:78505,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.proteomics:SPLib' +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,183 [pN:main,p:78505,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.proteomics:TandemXML' +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,183 [pN:main,p:78505,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.proteomics:ThermoRAW' +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,183 [pN:main,p:78505,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.proteomics:TraML' +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,183 [pN:main,p:78505,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.proteomics:TrafoXML' +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,183 [pN:main,p:78505,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.proteomics:UniProtXML' +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,183 [pN:main,p:78505,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.proteomics:XquestXML' +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,183 [pN:main,p:78505,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.proteomics:XquestSpecXML' +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,183 [pN:main,p:78505,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.proteomics:QCML' +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,183 [pN:main,p:78505,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.proteomics:Wiff' +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,183 [pN:main,p:78505,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.proteomics:PEFF' +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,184 [pN:main,p:78505,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.molecules:CML' +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,184 [pN:main,p:78505,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.xml:GenericXml' +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,184 [pN:main,p:78505,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.triples:HDT' +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,184 [pN:main,p:78505,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.triples:Turtle' +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,184 [pN:main,p:78505,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.triples:NTriples' +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,184 [pN:main,p:78505,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.triples:Jsonld' +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,184 [pN:main,p:78505,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.sequence:Maf' +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,184 [pN:main,p:78505,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.sequence:Lav' +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,184 [pN:main,p:78505,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.sequence:MemePsp' +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,184 [pN:main,p:78505,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.sequence:Fastg' +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,184 [pN:main,p:78505,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.sequence:csFasta' +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,184 [pN:main,p:78505,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.qualityscore:QualityScoreSOLiD' +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,184 [pN:main,p:78505,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.qualityscore:QualityScore454' +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,184 [pN:main,p:78505,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.molecules:SDF' +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,184 [pN:main,p:78505,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.molecules:PDB' +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,184 [pN:main,p:78505,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.molecules:Cell' +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,184 [pN:main,p:78505,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.molecules:CIF' +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,184 [pN:main,p:78505,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.molecules:ExtendedXYZ' +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,184 [pN:main,p:78505,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.molecules:XYZ' +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,185 [pN:main,p:78505,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.molecules:MOL2' +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,185 [pN:main,p:78505,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.molecules:InChI' +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,185 [pN:main,p:78505,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.molecules:FPS' +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,185 [pN:main,p:78505,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.molecules:PQR' +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,185 [pN:main,p:78505,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.molecules:GRO' +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,185 [pN:main,p:78505,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.phylip:Phylip' +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,185 [pN:main,p:78505,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.sequence:Fasta' +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,185 [pN:main,p:78505,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.sequence:FastqCSSanger' +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,185 [pN:main,p:78505,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.sequence:FastqSanger' +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,185 [pN:main,p:78505,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.sequence:Fastq' +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,185 [pN:main,p:78505,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.interval:Wiggle' +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,185 [pN:main,p:78505,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.text:Html' +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,185 [pN:main,p:78505,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.images:Pdf' +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,185 [pN:main,p:78505,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.sequence:Axt' +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,185 [pN:main,p:78505,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.sequence:Genbank' +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,185 [pN:main,p:78505,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.interval:Bed' +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,185 [pN:main,p:78505,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.interval:CustomTrack' +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,186 [pN:main,p:78505,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.interval:Gtf' +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,186 [pN:main,p:78505,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.interval:Gff' +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,186 [pN:main,p:78505,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.interval:Gff3' +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,186 [pN:main,p:78505,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.tabular:Pileup' +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,186 [pN:main,p:78505,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.tabular:Psl' +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,186 [pN:main,p:78505,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.text:Paf' +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,186 [pN:main,p:78505,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.interval:Interval' +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,186 [pN:main,p:78505,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.tabular:Sam' +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,186 [pN:main,p:78505,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.data:Newick' +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,186 [pN:main,p:78505,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.data:Nexus' +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,186 [pN:main,p:78505,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.text:IQTree' +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,186 [pN:main,p:78505,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.text:Obo' +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,186 [pN:main,p:78505,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.text:Arff' +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,186 [pN:main,p:78505,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.text:Ipynb' +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,186 [pN:main,p:78505,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.text:Biom1' +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,186 [pN:main,p:78505,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.text:ImgtJson' +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,187 [pN:main,p:78505,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.text:GeoJson' +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,187 [pN:main,p:78505,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.text:PithyaResult' +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,187 [pN:main,p:78505,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.text:BCSLts' +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,187 [pN:main,p:78505,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.text:Json' +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,187 [pN:main,p:78505,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.genetics:GenotypeMatrix' +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,187 [pN:main,p:78505,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.genetics:DataIn' +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,187 [pN:main,p:78505,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.genetics:MarkerMap' +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,187 [pN:main,p:78505,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.genetics:AllegroLOD' +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,187 [pN:main,p:78505,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.sequence:RNADotPlotMatrix' +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,187 [pN:main,p:78505,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.sequence:DotBracket' +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,187 [pN:main,p:78505,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.tabular:CMAP' +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,187 [pN:main,p:78505,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.tabular:ConnectivityTable' +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,187 [pN:main,p:78505,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.tabular:CSV' +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,187 [pN:main,p:78505,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.metacyto:mSummary' +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,187 [pN:main,p:78505,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.metacyto:mStats' +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,187 [pN:main,p:78505,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.tabular:TSV' +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,188 [pN:main,p:78505,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.tabular:MatrixMarket' +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,188 [pN:main,p:78505,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.msa:Hmmer2' +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,188 [pN:main,p:78505,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.msa:Hmmer3' +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,188 [pN:main,p:78505,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.msa:Stockholm_1_0' +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,188 [pN:main,p:78505,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.msa:MauveXmfa' +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,188 [pN:main,p:78505,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.msa:InfernalCM' +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,188 [pN:main,p:78505,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.annotation:SnapHmm' +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,188 [pN:main,p:78505,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.microarrays:Cel' +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,188 [pN:main,p:78505,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.microarrays:Gpr' +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,188 [pN:main,p:78505,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.microarrays:Gal' +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,188 [pN:main,p:78505,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.binary:RData' +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,188 [pN:main,p:78505,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.binary:RDS' +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,188 [pN:main,p:78505,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.images:Mrc2014' +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,188 [pN:main,p:78505,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.images:Jpg' +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,188 [pN:main,p:78505,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.images:Png' +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,188 [pN:main,p:78505,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.images:OMETiff' +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,189 [pN:main,p:78505,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.images:Tiff' +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,189 [pN:main,p:78505,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.images:Bmp' +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,189 [pN:main,p:78505,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.images:Gif' +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,189 [pN:main,p:78505,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.images:Im' +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,189 [pN:main,p:78505,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.images:Pcd' +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,189 [pN:main,p:78505,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.images:Pcx' +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,189 [pN:main,p:78505,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.images:Ppm' +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,189 [pN:main,p:78505,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.images:Psd' +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,189 [pN:main,p:78505,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.images:Xbm' +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,189 [pN:main,p:78505,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.images:Rgb' +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,189 [pN:main,p:78505,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.images:Pbm' +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,189 [pN:main,p:78505,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.images:Pgm' +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,189 [pN:main,p:78505,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.images:Xpm' +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,189 [pN:main,p:78505,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.images:Eps' +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,189 [pN:main,p:78505,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.images:Rast' +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,189 [pN:main,p:78505,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.images:Tck' +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,190 [pN:main,p:78505,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.images:Trk' +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,190 [pN:main,p:78505,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.images:Nifti1' +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,190 [pN:main,p:78505,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.images:Nifti2' +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,190 [pN:main,p:78505,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.images:Star' +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,190 [pN:main,p:78505,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.media:Wav' +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,190 [pN:main,p:78505,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.media:Mkv' +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,190 [pN:main,p:78505,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.media:Mp3' +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,190 [pN:main,p:78505,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.media:Mp4' +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,190 [pN:main,p:78505,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.media:Flv' +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,190 [pN:main,p:78505,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.media:Mpg' +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,190 [pN:main,p:78505,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.speech:TextGrid' +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,190 [pN:main,p:78505,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.speech:BPF' +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,190 [pN:main,p:78505,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.larch:FEFFInput' +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,190 [pN:main,p:78505,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.larch:AthenaProject' +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,190 [pN:main,p:78505,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.text:Castep' +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,191 [pN:main,p:78505,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.text:CTLresult' +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,191 [pN:main,p:78505,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.text:FormattedDensity' +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,191 [pN:main,p:78505,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.text:Param' +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,191 [pN:main,p:78505,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.text:Yaml' +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,191 [pN:main,p:78505,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.binary:OxliCountGraph' +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,191 [pN:main,p:78505,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.binary:OxliNodeGraph' +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,191 [pN:main,p:78505,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.binary:OxliTagSet' +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,191 [pN:main,p:78505,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.binary:OxliStopTags' +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,191 [pN:main,p:78505,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.binary:OxliSubset' +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,191 [pN:main,p:78505,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.binary:OxliGraphLabels' +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,191 [pN:main,p:78505,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.binary:FITS' +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,191 [pN:main,p:78505,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.neo4j:Neo4jDBzip' +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,191 [pN:main,p:78505,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.text:PithyaProperty' +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,191 [pN:main,p:78505,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.text:PithyaModel' +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,191 [pN:main,p:78505,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.text:BCSLmodel' +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,192 [pN:main,p:78505,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.text:StormSample' +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,192 [pN:main,p:78505,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.text:StormCheck' +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,196 [pN:main,p:78505,tN:MainThread] Build site file [tool-data/shared/ucsc/ucsc_build_sites.txt] not found using sample [tool-data/shared/ucsc/ucsc_build_sites.txt.sample]. +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,196 [pN:main,p:78505,tN:MainThread] Loaded build site 'ucsc': tool-data/shared/ucsc/ucsc_build_sites.txt.sample with display sites: ['main', 'test', 'archaea', 'ucla'] +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,197 [pN:main,p:78505,tN:MainThread] Loaded build site 'gbrowse': tool-data/shared/gbrowse/gbrowse_build_sites.txt with display sites: ['modencode', 'sgd_yeast', 'tair', 'wormbase', 'wormbase_ws120', 'wormbase_ws140', 'wormbase_ws170', 'wormbase_ws180', 'wormbase_ws190', 'wormbase_ws200', 'wormbase_ws204', 'wormbase_ws210', 'wormbase_ws220', 'wormbase_ws225'] +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,197 [pN:main,p:78505,tN:MainThread] Loaded build site 'ensembl': tool-data/shared/ensembl/ensembl_sites.txt +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,197 [pN:main,p:78505,tN:MainThread] Loaded build site 'ensembl_data_url': tool-data/shared/ensembl/ensembl_sites_data_URL.txt +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,197 [pN:main,p:78505,tN:MainThread] Build site file [tool-data/shared/igv/igv_build_sites.txt] not found using sample [tool-data/shared/igv/igv_build_sites.txt.sample]. +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,197 [pN:main,p:78505,tN:MainThread] Loaded build site 'igv': tool-data/shared/igv/igv_build_sites.txt.sample +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,197 [pN:main,p:78505,tN:MainThread] Build site file [tool-data/shared/rviewer/rviewer_build_sites.txt] not found using sample [tool-data/shared/rviewer/rviewer_build_sites.txt.sample]. +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,197 [pN:main,p:78505,tN:MainThread] Loaded build site 'rviewer': tool-data/shared/rviewer/rviewer_build_sites.txt.sample +galaxy.util.tool_shed.tool_shed_registry DEBUG 2024-02-23 14:21:35,198 [pN:main,p:78505,tN:MainThread] Loading references to tool sheds from /tmp/tmpqrlh6ih1/tool_sheds_conf.xml +galaxy.util.tool_shed.tool_shed_registry DEBUG 2024-02-23 14:21:35,198 [pN:main,p:78505,tN:MainThread] Loaded reference to tool shed: Target Shed +galaxy.queue_worker INFO 2024-02-23 14:21:35,198 [pN:main,p:78505,tN:MainThread] Initializing main Galaxy Queue Worker on sqlalchemy+sqlite:////tmp/tmpqrlh6ih1/galaxy.sqlite?isolation_level=IMMEDIATE +galaxy.visualization.genomes ERROR 2024-02-23 14:21:35,213 [pN:main,p:78505,tN:MainThread] Error reading twobit.loc +Traceback (most recent call last): + File "/scratch/rico/galaxy/lib/galaxy/visualization/genomes.py", line 220, in reload_genomes + with open(twobit_path) as f: +FileNotFoundError: [Errno 2] No such file or directory: '/scratch/rico/galaxy/tool-data/twobit.loc' +galaxy.util WARNING 2024-02-23 14:21:35,452 [pN:main,p:78505,tN:MainThread] directory not found: /scratch/rico/galaxy/lib/galaxy/util/../../../config/plugins/activities +galaxy.tools WARNING 2024-02-23 14:21:35,452 [pN:main,p:78505,tN:MainThread] The default shed tool config file (/tmp/tmpqrlh6ih1/shed_tool_conf.xml) has been added to the tool_config_file option, if this is not the desired behavior, please set shed_tool_config_file to your primary shed-enabled tool config file +galaxy.tool_util.toolbox.base INFO 2024-02-23 14:21:35,452 [pN:main,p:78505,tN:MainThread] Parsing the tool configuration /tmp/tmpqrlh6ih1/tool_conf.xml +galaxy.tool_util.toolbox.base DEBUG 2024-02-23 14:21:35,453 [pN:main,p:78505,tN:MainThread] Tool path for tool configuration /tmp/tmpqrlh6ih1/tool_conf.xml is None +galaxy.tool_util.toolbox.base DEBUG 2024-02-23 14:21:35,462 [pN:main,p:78505,tN:MainThread] Loaded tool id: upload1, version: 1.1.7 into tool panel.. +galaxy.tool_util.toolbox.base DEBUG 2024-02-23 14:21:35,465 [pN:main,p:78505,tN:MainThread] Loaded tool id: ncbi_fcs_adaptor, version: 0.5.0+galaxy0 into tool panel.. +galaxy.tools WARNING 2024-02-23 14:21:35,465 [pN:main,p:78505,tN:MainThread] The default shed tool config file (/tmp/tmpqrlh6ih1/shed_tool_conf.xml) has been added to the tool_config_file option, if this is not the desired behavior, please set shed_tool_config_file to your primary shed-enabled tool config file +galaxy.tool_util.toolbox.base INFO 2024-02-23 14:21:35,465 [pN:main,p:78505,tN:MainThread] Parsing the tool configuration /tmp/tmpqrlh6ih1/shed_tools_conf.xml +galaxy.tool_util.toolbox.base DEBUG 2024-02-23 14:21:35,465 [pN:main,p:78505,tN:MainThread] Tool path for shed tool configuration /tmp/tmpqrlh6ih1/shed_tools_conf.xml is /tmp/tmpqrlh6ih1/shed_tools +galaxy.tools WARNING 2024-02-23 14:21:35,465 [pN:main,p:78505,tN:MainThread] The default shed tool config file (/tmp/tmpqrlh6ih1/shed_tool_conf.xml) has been added to the tool_config_file option, if this is not the desired behavior, please set shed_tool_config_file to your primary shed-enabled tool config file +galaxy.tool_util.toolbox.base INFO 2024-02-23 14:21:35,466 [pN:main,p:78505,tN:MainThread] Parsing the tool configuration /tmp/tmpqrlh6ih1/empty_tool_conf.xml +galaxy.tool_util.toolbox.base DEBUG 2024-02-23 14:21:35,466 [pN:main,p:78505,tN:MainThread] Tool path for tool configuration /tmp/tmpqrlh6ih1/empty_tool_conf.xml is None +galaxy.tool_util.toolbox.base DEBUG 2024-02-23 14:21:35,466 [pN:main,p:78505,tN:MainThread] Reading tools from config files finished (13.784 ms) +galaxy.tool_util.toolbox.base DEBUG 2024-02-23 14:21:35,468 [pN:main,p:78505,tN:MainThread] Loaded tool id: upload1, version: 1.1.7 into tool panel.. +galaxy.tool_util.toolbox.views.edam DEBUG 2024-02-23 14:21:35,468 [pN:main,p:78505,tN:MainThread] Loading EDAM tool panel finished (1.469 ms) +galaxy.tool_util.toolbox.base DEBUG 2024-02-23 14:21:35,469 [pN:main,p:78505,tN:MainThread] Loaded tool id: upload1, version: 1.1.7 into tool panel.. +galaxy.tool_util.toolbox.views.edam DEBUG 2024-02-23 14:21:35,469 [pN:main,p:78505,tN:MainThread] Loading EDAM tool panel finished (1.281 ms) +galaxy.tool_util.toolbox.integrated_panel DEBUG 2024-02-23 14:21:35,469 [pN:main,p:78505,tN:MainThread] Writing integrated tool panel config file to '/tmp/tmpqrlh6ih1/integrated_tool_panel_conf.xml' +galaxy.util ERROR 2024-02-23 14:21:35,925 [pN:main,p:78505,tN:MainThread] Error parsing file /tmp/tmpqrlh6ih1 +Traceback (most recent call last): + File "/scratch/rico/galaxy/lib/galaxy/util/__init__.py", line 305, in parse_xml + tree = etree.parse(str(fname), parser=parser) + File "src/lxml/etree.pyx", line 3541, in lxml.etree.parse + File "src/lxml/parser.pxi", line 1879, in lxml.etree._parseDocument + File "src/lxml/parser.pxi", line 1905, in lxml.etree._parseDocumentFromURL + File "src/lxml/parser.pxi", line 1808, in lxml.etree._parseDocFromFile + File "src/lxml/parser.pxi", line 1180, in lxml.etree._BaseParser._parseDocFromFile + File "src/lxml/parser.pxi", line 618, in lxml.etree._ParserContext._handleParseResultDoc + File "src/lxml/parser.pxi", line 728, in lxml.etree._handleParseResult + File "src/lxml/parser.pxi", line 657, in lxml.etree._raiseParseError + File "/tmp/tmpqrlh6ih1", line 1 +lxml.etree.XMLSyntaxError: Document is empty, line 1, column 1 +galaxy.tools.data_manager.manager ERROR 2024-02-23 14:21:35,926 [pN:main,p:78505,tN:MainThread] There was an error parsing your Data Manager config file "/tmp/tmpqrlh6ih1": Document is empty, line 1, column 1 (tmpqrlh6ih1, line 1) +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,927 [pN:main,p:78505,tN:MainThread] Loaded display application 'ucsc_bam' for datatype 'bam', inherit=False. +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,928 [pN:main,p:78505,tN:MainThread] Loaded display application 'ensembl_bam' for datatype 'bam', inherit=False. +galaxy.datatypes.display_applications.application ERROR 2024-02-23 14:21:35,929 [pN:main,p:78505,tN:MainThread] Error loading a set of Dynamic Display Application links: Unable to find data table named "igv_broad_genomes". +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,930 [pN:main,p:78505,tN:MainThread] Loaded display application 'igv_bam' for datatype 'bam', inherit=False. +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,930 [pN:main,p:78505,tN:MainThread] Loaded display application 'igb_bam' for datatype 'bam', inherit=False. +galaxy.datatypes.display_applications.application ERROR 2024-02-23 14:21:35,930 [pN:main,p:78505,tN:MainThread] Error loading a set of Dynamic Display Application links: Unable to find data table named "bam_iobio". +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,930 [pN:main,p:78505,tN:MainThread] Loaded display application 'iobio_bam' for datatype 'bam', inherit=False. +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,931 [pN:main,p:78505,tN:MainThread] Loaded display application 'igb_bed' for datatype 'bed', inherit=False. +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,931 [pN:main,p:78505,tN:MainThread] Loaded display application 'igb_bedgraph' for datatype 'bedgraph', inherit=False. +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,932 [pN:main,p:78505,tN:MainThread] Loaded display application 'ucsc_bigbed' for datatype 'bigbed', inherit=False. +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,932 [pN:main,p:78505,tN:MainThread] Loaded display application 'igb_bb' for datatype 'bigbed', inherit=False. +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,932 [pN:main,p:78505,tN:MainThread] Loaded display application 'ucsc_bigwig' for datatype 'bigwig', inherit=False. +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,933 [pN:main,p:78505,tN:MainThread] Loaded display application 'igb_bigwig' for datatype 'bigwig', inherit=False. +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,933 [pN:main,p:78505,tN:MainThread] Loaded display application 'igv_bigwig' for datatype 'bigwig', inherit=False. +galaxy.datatypes.display_applications.application ERROR 2024-02-23 14:21:35,933 [pN:main,p:78505,tN:MainThread] Error loading a set of Dynamic Display Application links: Unable to find data table named "intermine_simple_display". +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,933 [pN:main,p:78505,tN:MainThread] Loaded display application 'intermine_simple' for datatype 'intermine_tabular', inherit=False. +galaxy.datatypes.display_applications.application ERROR 2024-02-23 14:21:35,934 [pN:main,p:78505,tN:MainThread] Error loading a set of Dynamic Display Application links: Unable to find data table named "igv_broad_genomes". +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,934 [pN:main,p:78505,tN:MainThread] Loaded display application 'igv_fasta' for datatype 'fasta', inherit=True. +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,935 [pN:main,p:78505,tN:MainThread] Loaded display application 'ensembl_gff' for datatype 'gff', inherit=True. +galaxy.datatypes.display_applications.application ERROR 2024-02-23 14:21:35,936 [pN:main,p:78505,tN:MainThread] Error loading a set of Dynamic Display Application links: Unable to find data table named "igv_broad_genomes". +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,936 [pN:main,p:78505,tN:MainThread] Loaded display application 'igv_gff' for datatype 'gff', inherit=True. +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,936 [pN:main,p:78505,tN:MainThread] Loaded display application 'igb_gtf' for datatype 'gtf', inherit=False. +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,937 [pN:main,p:78505,tN:MainThread] Loaded display application 'ensembl_interval' for datatype 'interval', inherit=True. +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,938 [pN:main,p:78505,tN:MainThread] Loaded display application 'gbrowse_interval_as_bed' for datatype 'interval', inherit=True. +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,939 [pN:main,p:78505,tN:MainThread] Loaded display application 'rviewer_interval' for datatype 'interval', inherit=True. +galaxy.datatypes.display_applications.application ERROR 2024-02-23 14:21:35,939 [pN:main,p:78505,tN:MainThread] Error loading a set of Dynamic Display Application links: Unable to find data table named "igv_broad_genomes". +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,939 [pN:main,p:78505,tN:MainThread] Loaded display application 'igv_interval_as_bed' for datatype 'interval', inherit=True. +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,939 [pN:main,p:78505,tN:MainThread] Loaded display application 'avivator' for datatype 'ome.tiff', inherit=False. +galaxy.datatypes.display_applications.application ERROR 2024-02-23 14:21:35,940 [pN:main,p:78505,tN:MainThread] Error loading a set of Dynamic Display Application links: Unable to find data table named "q2view_display". +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,940 [pN:main,p:78505,tN:MainThread] Loaded display application 'q2view' for datatype 'qza', inherit=False. +galaxy.datatypes.display_applications.application ERROR 2024-02-23 14:21:35,940 [pN:main,p:78505,tN:MainThread] Error loading a set of Dynamic Display Application links: Unable to find data table named "q2view_display". +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,940 [pN:main,p:78505,tN:MainThread] Loaded display application 'q2view' for datatype 'qzv', inherit=False. +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,940 [pN:main,p:78505,tN:MainThread] Loaded display application 'ucsc_maf_customtrack' for datatype 'mafcustomtrack', inherit=False. +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,941 [pN:main,p:78505,tN:MainThread] Loaded display application 'minerva_tabular' for datatype 'tabular', inherit=False. +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,941 [pN:main,p:78505,tN:MainThread] Loaded display application 'ucsc_vcf' for datatype 'vcf', inherit=False. +galaxy.datatypes.display_applications.application ERROR 2024-02-23 14:21:35,942 [pN:main,p:78505,tN:MainThread] Error loading a set of Dynamic Display Application links: Unable to find data table named "igv_broad_genomes". +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,942 [pN:main,p:78505,tN:MainThread] Loaded display application 'igv_vcf' for datatype 'vcf', inherit=False. +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,942 [pN:main,p:78505,tN:MainThread] Loaded display application 'rviewer_vcf' for datatype 'vcf', inherit=True. +galaxy.datatypes.display_applications.application ERROR 2024-02-23 14:21:35,942 [pN:main,p:78505,tN:MainThread] Error loading a set of Dynamic Display Application links: Unable to find data table named "vcf_iobio". +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,942 [pN:main,p:78505,tN:MainThread] Loaded display application 'iobio_vcf' for datatype 'vcf', inherit=False. +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,943 [pN:main,p:78505,tN:MainThread] Loaded display application 'igb_wig' for datatype 'wig', inherit=False. +galaxy.datatypes.display_applications.application ERROR 2024-02-23 14:21:35,943 [pN:main,p:78505,tN:MainThread] Error loading a set of Dynamic Display Application links: Unable to find data table named "igv_broad_genomes". +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,943 [pN:main,p:78505,tN:MainThread] Loaded display application 'igv_vcf' for datatype 'vcf_bgzip', inherit=False. +galaxy.datatypes.display_applications.application ERROR 2024-02-23 14:21:35,944 [pN:main,p:78505,tN:MainThread] Error loading a set of Dynamic Display Application links: Unable to find data table named "igv_broad_genomes". +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,944 [pN:main,p:78505,tN:MainThread] Loaded display application 'igv_genbank' for datatype 'genbank', inherit=False. +galaxy.datatypes.display_applications.application ERROR 2024-02-23 14:21:35,944 [pN:main,p:78505,tN:MainThread] Error loading a set of Dynamic Display Application links: Unable to find data table named "biom_simple_display". +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,944 [pN:main,p:78505,tN:MainThread] Loaded display application 'biom_simple' for datatype 'biom1', inherit=False. +galaxy.datatypes.display_applications.application ERROR 2024-02-23 14:21:35,944 [pN:main,p:78505,tN:MainThread] Error loading a set of Dynamic Display Application links: Unable to find data table named "icn3d_simple_display". +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,944 [pN:main,p:78505,tN:MainThread] Loaded display application 'icn3d_simple' for datatype 'sdf', inherit=False. +galaxy.datatypes.display_applications.application ERROR 2024-02-23 14:21:35,945 [pN:main,p:78505,tN:MainThread] Error loading a set of Dynamic Display Application links: Unable to find data table named "icn3d_simple_display". +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,945 [pN:main,p:78505,tN:MainThread] Loaded display application 'icn3d_simple' for datatype 'mol2', inherit=False. +galaxy.datatypes.display_applications.application ERROR 2024-02-23 14:21:35,945 [pN:main,p:78505,tN:MainThread] Error loading a set of Dynamic Display Application links: Unable to find data table named "icn3d_simple_display". +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,945 [pN:main,p:78505,tN:MainThread] Loaded display application 'icn3d_simple' for datatype 'pdb', inherit=False. +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,945 [pN:main,p:78505,tN:MainThread] Loaded display application 'ucsc_trackhub' for datatype 'trackhub', inherit=False. +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,945 [pN:main,p:78505,tN:MainThread] Adding inherited display application 'ensembl_interval' to datatype 'bed' +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,945 [pN:main,p:78505,tN:MainThread] Adding inherited display application 'gbrowse_interval_as_bed' to datatype 'bed' +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,945 [pN:main,p:78505,tN:MainThread] Adding inherited display application 'rviewer_interval' to datatype 'bed' +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,945 [pN:main,p:78505,tN:MainThread] Adding inherited display application 'igv_interval_as_bed' to datatype 'bed' +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,945 [pN:main,p:78505,tN:MainThread] Adding inherited display application 'ensembl_interval' to datatype 'bedgraph' +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,945 [pN:main,p:78505,tN:MainThread] Adding inherited display application 'gbrowse_interval_as_bed' to datatype 'bedgraph' +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,945 [pN:main,p:78505,tN:MainThread] Adding inherited display application 'rviewer_interval' to datatype 'bedgraph' +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,945 [pN:main,p:78505,tN:MainThread] Adding inherited display application 'igv_interval_as_bed' to datatype 'bedgraph' +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,945 [pN:main,p:78505,tN:MainThread] Adding inherited display application 'ensembl_interval' to datatype 'bedstrict' +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,946 [pN:main,p:78505,tN:MainThread] Adding inherited display application 'gbrowse_interval_as_bed' to datatype 'bedstrict' +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,946 [pN:main,p:78505,tN:MainThread] Adding inherited display application 'rviewer_interval' to datatype 'bedstrict' +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,946 [pN:main,p:78505,tN:MainThread] Adding inherited display application 'igv_interval_as_bed' to datatype 'bedstrict' +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,946 [pN:main,p:78505,tN:MainThread] Adding inherited display application 'ensembl_interval' to datatype 'bed6' +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,946 [pN:main,p:78505,tN:MainThread] Adding inherited display application 'gbrowse_interval_as_bed' to datatype 'bed6' +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,946 [pN:main,p:78505,tN:MainThread] Adding inherited display application 'rviewer_interval' to datatype 'bed6' +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,946 [pN:main,p:78505,tN:MainThread] Adding inherited display application 'igv_interval_as_bed' to datatype 'bed6' +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,946 [pN:main,p:78505,tN:MainThread] Adding inherited display application 'ensembl_interval' to datatype 'bed12' +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,946 [pN:main,p:78505,tN:MainThread] Adding inherited display application 'gbrowse_interval_as_bed' to datatype 'bed12' +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,946 [pN:main,p:78505,tN:MainThread] Adding inherited display application 'rviewer_interval' to datatype 'bed12' +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,946 [pN:main,p:78505,tN:MainThread] Adding inherited display application 'igv_interval_as_bed' to datatype 'bed12' +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,946 [pN:main,p:78505,tN:MainThread] Adding inherited display application 'ensembl_interval' to datatype 'probed' +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,946 [pN:main,p:78505,tN:MainThread] Adding inherited display application 'gbrowse_interval_as_bed' to datatype 'probed' +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,946 [pN:main,p:78505,tN:MainThread] Adding inherited display application 'rviewer_interval' to datatype 'probed' +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,946 [pN:main,p:78505,tN:MainThread] Adding inherited display application 'igv_interval_as_bed' to datatype 'probed' +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,946 [pN:main,p:78505,tN:MainThread] Adding inherited display application 'ensembl_interval' to datatype 'chrint' +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,946 [pN:main,p:78505,tN:MainThread] Adding inherited display application 'gbrowse_interval_as_bed' to datatype 'chrint' +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,946 [pN:main,p:78505,tN:MainThread] Adding inherited display application 'rviewer_interval' to datatype 'chrint' +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,946 [pN:main,p:78505,tN:MainThread] Adding inherited display application 'igv_interval_as_bed' to datatype 'chrint' +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,946 [pN:main,p:78505,tN:MainThread] Adding inherited display application 'igv_fasta' to datatype 'fasta.gz' +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,946 [pN:main,p:78505,tN:MainThread] Adding inherited display application 'ensembl_gff' to datatype 'gff3' +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,946 [pN:main,p:78505,tN:MainThread] Adding inherited display application 'igv_gff' to datatype 'gff3' +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,946 [pN:main,p:78505,tN:MainThread] Adding inherited display application 'ensembl_gff' to datatype 'gff3.gz' +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,946 [pN:main,p:78505,tN:MainThread] Adding inherited display application 'igv_gff' to datatype 'gff3.gz' +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,946 [pN:main,p:78505,tN:MainThread] Adding inherited display application 'ensembl_gff' to datatype 'gff3.bz2' +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,946 [pN:main,p:78505,tN:MainThread] Adding inherited display application 'igv_gff' to datatype 'gff3.bz2' +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,946 [pN:main,p:78505,tN:MainThread] Adding inherited display application 'ensembl_gff' to datatype 'gtf' +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,947 [pN:main,p:78505,tN:MainThread] Adding inherited display application 'igv_gff' to datatype 'gtf' +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,947 [pN:main,p:78505,tN:MainThread] Adding inherited display application 'ensembl_interval' to datatype 'encodepeak' +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,947 [pN:main,p:78505,tN:MainThread] Adding inherited display application 'gbrowse_interval_as_bed' to datatype 'encodepeak' +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,948 [pN:main,p:78505,tN:MainThread] Adding inherited display application 'rviewer_interval' to datatype 'encodepeak' +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,948 [pN:main,p:78505,tN:MainThread] Adding inherited display application 'igv_interval_as_bed' to datatype 'encodepeak' +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,948 [pN:main,p:78505,tN:MainThread] Adding inherited display application 'igv_fasta' to datatype 'sequences' +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,948 [pN:main,p:78505,tN:MainThread] Adding inherited display application 'ensembl_interval' to datatype 'interval_tabix.gz' +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,948 [pN:main,p:78505,tN:MainThread] Adding inherited display application 'gbrowse_interval_as_bed' to datatype 'interval_tabix.gz' +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,948 [pN:main,p:78505,tN:MainThread] Adding inherited display application 'rviewer_interval' to datatype 'interval_tabix.gz' +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,948 [pN:main,p:78505,tN:MainThread] Adding inherited display application 'igv_interval_as_bed' to datatype 'interval_tabix.gz' +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,948 [pN:main,p:78505,tN:MainThread] Adding inherited display application 'ensembl_interval' to datatype 'juicer_medium_tabix.gz' +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,948 [pN:main,p:78505,tN:MainThread] Adding inherited display application 'gbrowse_interval_as_bed' to datatype 'juicer_medium_tabix.gz' +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,948 [pN:main,p:78505,tN:MainThread] Adding inherited display application 'rviewer_interval' to datatype 'juicer_medium_tabix.gz' +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,948 [pN:main,p:78505,tN:MainThread] Adding inherited display application 'igv_interval_as_bed' to datatype 'juicer_medium_tabix.gz' +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,948 [pN:main,p:78505,tN:MainThread] Adding inherited display application 'ensembl_interval' to datatype 'bed_tabix.gz' +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,948 [pN:main,p:78505,tN:MainThread] Adding inherited display application 'gbrowse_interval_as_bed' to datatype 'bed_tabix.gz' +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,948 [pN:main,p:78505,tN:MainThread] Adding inherited display application 'rviewer_interval' to datatype 'bed_tabix.gz' +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,948 [pN:main,p:78505,tN:MainThread] Adding inherited display application 'igv_interval_as_bed' to datatype 'bed_tabix.gz' +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,948 [pN:main,p:78505,tN:MainThread] Adding inherited display application 'ensembl_interval' to datatype 'gff_tabix.gz' +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,948 [pN:main,p:78505,tN:MainThread] Adding inherited display application 'gbrowse_interval_as_bed' to datatype 'gff_tabix.gz' +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,948 [pN:main,p:78505,tN:MainThread] Adding inherited display application 'rviewer_interval' to datatype 'gff_tabix.gz' +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,948 [pN:main,p:78505,tN:MainThread] Adding inherited display application 'igv_interval_as_bed' to datatype 'gff_tabix.gz' +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,949 [pN:main,p:78505,tN:MainThread] Adding inherited display application 'igv_fasta' to datatype 'mothur.align' +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,952 [pN:main,p:78505,tN:MainThread] Loaded converter: CONVERTER_uncompressed_to_gz +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,953 [pN:main,p:78505,tN:MainThread] Loaded converter: CONVERTER_gz_to_uncompressed +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,954 [pN:main,p:78505,tN:MainThread] Loaded converter: CONVERTER_uncompressed_to_gz +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,955 [pN:main,p:78505,tN:MainThread] Loaded converter: CONVERTER_gz_to_uncompressed +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,957 [pN:main,p:78505,tN:MainThread] Loaded converter: CONVERTER_uncompressed_to_gz +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,958 [pN:main,p:78505,tN:MainThread] Loaded converter: CONVERTER_gz_to_uncompressed +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,959 [pN:main,p:78505,tN:MainThread] Loaded converter: CONVERTER_Bam_Bai_0 +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,960 [pN:main,p:78505,tN:MainThread] Loaded converter: CONVERTER_bam_to_bigwig_0 +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,961 [pN:main,p:78505,tN:MainThread] Loaded converter: CONVERTER_bam_to_qname_sorted_bam +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,962 [pN:main,p:78505,tN:MainThread] Loaded converter: CONVERTER_bam_to_bigwig_0 +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,963 [pN:main,p:78505,tN:MainThread] Loaded converter: CONVERTER_bam_to_coodinate_sorted_bam +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,964 [pN:main,p:78505,tN:MainThread] Loaded converter: CONVERTER_bam_to_qname_sorted_bam +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,965 [pN:main,p:78505,tN:MainThread] Loaded converter: CONVERTER_cram_to_bam_0 +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,966 [pN:main,p:78505,tN:MainThread] Loaded converter: CONVERTER_bed_to_gff_0 +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,968 [pN:main,p:78505,tN:MainThread] Loaded converter: CONVERTER_interval_to_bgzip_0 +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,970 [pN:main,p:78505,tN:MainThread] Loaded converter: CONVERTER_interval_to_tabix_0 +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,971 [pN:main,p:78505,tN:MainThread] Loaded converter: CONVERTER_bed_gff_or_vcf_to_bigwig_0 +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,972 [pN:main,p:78505,tN:MainThread] Loaded converter: CONVERTER_bed_to_fli_0 +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,973 [pN:main,p:78505,tN:MainThread] Loaded converter: CONVERTER_bedgraph_to_bigwig +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,974 [pN:main,p:78505,tN:MainThread] Loaded converter: CONVERTER_len_to_linecount +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,975 [pN:main,p:78505,tN:MainThread] Loaded converter: CONVERTER_parquet_to_csv +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,977 [pN:main,p:78505,tN:MainThread] Loaded converter: bigwigtowig +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,980 [pN:main,p:78505,tN:MainThread] Loaded converter: CONVERTER_interval_to_bgzip_0 +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,982 [pN:main,p:78505,tN:MainThread] Loaded converter: CONVERTER_interval_to_tabix_0 +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,983 [pN:main,p:78505,tN:MainThread] Loaded converter: CONVERTER_bed_gff_or_vcf_to_bigwig_0 +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,984 [pN:main,p:78505,tN:MainThread] Loaded converter: csv_to_tabular +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,985 [pN:main,p:78505,tN:MainThread] Loaded converter: tabular_to_csv +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,986 [pN:main,p:78505,tN:MainThread] Loaded converter: CONVERTER_fasta_to_tabular +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,987 [pN:main,p:78505,tN:MainThread] Loaded converter: CONVERTER_fasta_to_bowtie_base_index +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,988 [pN:main,p:78505,tN:MainThread] Loaded converter: CONVERTER_fasta_to_bowtie_color_index +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,989 [pN:main,p:78505,tN:MainThread] Loaded converter: CONVERTER_fasta_to_2bit +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,990 [pN:main,p:78505,tN:MainThread] Loaded converter: CONVERTER_fasta_to_len +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,991 [pN:main,p:78505,tN:MainThread] Loaded converter: CONVERTER_fasta_to_fai +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,992 [pN:main,p:78505,tN:MainThread] Loaded converter: CONVERTER_uncompressed_to_gz +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,993 [pN:main,p:78505,tN:MainThread] Loaded converter: CONVERTER_gz_to_uncompressed +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,994 [pN:main,p:78505,tN:MainThread] Loaded converter: CONVERTER_fastq_to_fqtoc0 +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,996 [pN:main,p:78505,tN:MainThread] Loaded converter: CONVERTER_uncompressed_to_gz +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,997 [pN:main,p:78505,tN:MainThread] Loaded converter: CONVERTER_gz_to_uncompressed +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,998 [pN:main,p:78505,tN:MainThread] Loaded converter: CONVERTER_bz2_to_uncompressed +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:35,999 [pN:main,p:78505,tN:MainThread] Loaded converter: CONVERTER_fastq_to_fqtoc0 +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:36,000 [pN:main,p:78505,tN:MainThread] Loaded converter: CONVERTER_uncompressed_to_gz +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:36,001 [pN:main,p:78505,tN:MainThread] Loaded converter: CONVERTER_gz_to_uncompressed +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:36,002 [pN:main,p:78505,tN:MainThread] Loaded converter: CONVERTER_bz2_to_uncompressed +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:36,003 [pN:main,p:78505,tN:MainThread] Loaded converter: CONVERTER_fastq_to_fqtoc0 +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:36,005 [pN:main,p:78505,tN:MainThread] Loaded converter: CONVERTER_uncompressed_to_gz +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:36,006 [pN:main,p:78505,tN:MainThread] Loaded converter: CONVERTER_gz_to_uncompressed +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:36,007 [pN:main,p:78505,tN:MainThread] Loaded converter: CONVERTER_bz2_to_uncompressed +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:36,008 [pN:main,p:78505,tN:MainThread] Loaded converter: CONVERTER_fastq_to_fqtoc0 +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:36,010 [pN:main,p:78505,tN:MainThread] Loaded converter: CONVERTER_uncompressed_to_gz +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:36,011 [pN:main,p:78505,tN:MainThread] Loaded converter: CONVERTER_gz_to_uncompressed +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:36,012 [pN:main,p:78505,tN:MainThread] Loaded converter: CONVERTER_bz2_to_uncompressed +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:36,013 [pN:main,p:78505,tN:MainThread] Loaded converter: CONVERTER_fastq_to_fqtoc0 +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:36,015 [pN:main,p:78505,tN:MainThread] Loaded converter: CONVERTER_uncompressed_to_gz +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:36,016 [pN:main,p:78505,tN:MainThread] Loaded converter: CONVERTER_gz_to_uncompressed +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:36,017 [pN:main,p:78505,tN:MainThread] Loaded converter: CONVERTER_bz2_to_uncompressed +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:36,018 [pN:main,p:78505,tN:MainThread] Loaded converter: CONVERTER_gff_to_bed_0 +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:36,019 [pN:main,p:78505,tN:MainThread] Loaded converter: CONVERTER_gff_to_interval_index_0 +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:36,020 [pN:main,p:78505,tN:MainThread] Loaded converter: CONVERTER_bed_gff_or_vcf_to_bigwig_0 +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:36,021 [pN:main,p:78505,tN:MainThread] Loaded converter: CONVERTER_gff_to_fli_0 +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:36,023 [pN:main,p:78505,tN:MainThread] Loaded converter: CONVERTER_interval_to_bgzip_0 +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:36,025 [pN:main,p:78505,tN:MainThread] Loaded converter: CONVERTER_interval_to_tabix_0 +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:36,026 [pN:main,p:78505,tN:MainThread] Loaded converter: CONVERTER_uncompressed_to_gz +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:36,027 [pN:main,p:78505,tN:MainThread] Loaded converter: CONVERTER_gz_to_uncompressed +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:36,029 [pN:main,p:78505,tN:MainThread] Loaded converter: CONVERTER_bz2_to_uncompressed +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:36,029 [pN:main,p:78505,tN:MainThread] Loaded converter: CONVERTER_gff_to_interval_index_0 +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:36,030 [pN:main,p:78505,tN:MainThread] Loaded converter: CONVERTER_bed_gff_or_vcf_to_bigwig_0 +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:36,031 [pN:main,p:78505,tN:MainThread] Loaded converter: CONVERTER_interval_to_bed_0 +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:36,032 [pN:main,p:78505,tN:MainThread] Loaded converter: CONVERTER_interval_to_bedstrict_0 +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:36,033 [pN:main,p:78505,tN:MainThread] Loaded converter: CONVERTER_interval_to_bed6_0 +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:36,034 [pN:main,p:78505,tN:MainThread] Loaded converter: CONVERTER_interval_to_bed12_0 +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:36,037 [pN:main,p:78505,tN:MainThread] Loaded converter: CONVERTER_interval_to_bgzip_0 +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:36,039 [pN:main,p:78505,tN:MainThread] Loaded converter: CONVERTER_interval_to_tabix_0 +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:36,040 [pN:main,p:78505,tN:MainThread] Loaded converter: CONVERTER_interval_to_bigwig_0 +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:36,041 [pN:main,p:78505,tN:MainThread] Loaded converter: CONVERTER_picard_interval_list_to_bed6 +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:36,042 [pN:main,p:78505,tN:MainThread] Loaded converter: CONVERTER_tar_to_directory +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:36,043 [pN:main,p:78505,tN:MainThread] Loaded converter: CONVERTER_uncompressed_to_gz +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:36,044 [pN:main,p:78505,tN:MainThread] Loaded converter: CONVERTER_gz_to_uncompressed +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:36,046 [pN:main,p:78505,tN:MainThread] Loaded converter: CONVERTER_uncompressed_to_gz +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:36,047 [pN:main,p:78505,tN:MainThread] Loaded converter: CONVERTER_gz_to_uncompressed +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:36,048 [pN:main,p:78505,tN:MainThread] Loaded converter: CONVERTER_uncompressed_to_gz +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:36,049 [pN:main,p:78505,tN:MainThread] Loaded converter: CONVERTER_gz_to_uncompressed +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:36,050 [pN:main,p:78505,tN:MainThread] Loaded converter: CONVERTER_maf_to_fasta_0 +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:36,051 [pN:main,p:78505,tN:MainThread] Loaded converter: CONVERTER_maf_to_interval_0 +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:36,053 [pN:main,p:78505,tN:MainThread] Loaded converter: CONVERTER_interval_to_tabix_0 +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:36,056 [pN:main,p:78505,tN:MainThread] Loaded converter: CONVERTER_interval_to_bgzip_0 +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:36,057 [pN:main,p:78505,tN:MainThread] Loaded converter: CONVERTER_bed_gff_or_vcf_to_bigwig_0 +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:36,059 [pN:main,p:78505,tN:MainThread] Loaded converter: CONVERTER_interval_to_bgzip_0 +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:36,061 [pN:main,p:78505,tN:MainThread] Loaded converter: CONVERTER_interval_to_tabix_0 +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:36,062 [pN:main,p:78505,tN:MainThread] Loaded converter: CONVERTER_sam_to_unsorted_bam +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:36,063 [pN:main,p:78505,tN:MainThread] Loaded converter: CONVERTER_bam_to_coodinate_sorted_bam +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:36,064 [pN:main,p:78505,tN:MainThread] Loaded converter: CONVERTER_bam_to_qname_sorted_bam +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:36,065 [pN:main,p:78505,tN:MainThread] Loaded converter: CONVERTER_sam_to_bigwig_0 +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:36,066 [pN:main,p:78505,tN:MainThread] Loaded converter: tabular_to_dbnsfp +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:36,067 [pN:main,p:78505,tN:MainThread] Loaded converter: tabular_to_csv +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:36,069 [pN:main,p:78505,tN:MainThread] Loaded converter: CONVERTER_uncompressed_to_gz +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:36,070 [pN:main,p:78505,tN:MainThread] Loaded converter: CONVERTER_gz_to_uncompressed +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:36,072 [pN:main,p:78505,tN:MainThread] Loaded converter: CONVERTER_interval_to_bgzip_0 +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:36,073 [pN:main,p:78505,tN:MainThread] Loaded converter: CONVERTER_vcf_to_vcf_bgzip_0 +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:36,075 [pN:main,p:78505,tN:MainThread] Loaded converter: CONVERTER_interval_to_tabix_0 +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:36,076 [pN:main,p:78505,tN:MainThread] Loaded converter: CONVERTER_bed_gff_or_vcf_to_bigwig_0 +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:36,078 [pN:main,p:78505,tN:MainThread] Loaded converter: CONVERTER_uncompressed_to_gz +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:36,079 [pN:main,p:78505,tN:MainThread] Loaded converter: CONVERTER_bcf_uncompressed_to_bcf +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:36,080 [pN:main,p:78505,tN:MainThread] Loaded converter: CONVERTER_bcf_uncompressed_to_bcf +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:36,081 [pN:main,p:78505,tN:MainThread] Loaded converter: CONVERTER_wig_to_bigwig +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:36,082 [pN:main,p:78505,tN:MainThread] Loaded converter: CONVERTER_wiggle_to_interval_0 +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:36,084 [pN:main,p:78505,tN:MainThread] Loaded converter: CONVERTER_vcf_bgzip_to_tabix_0 +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:36,085 [pN:main,p:78505,tN:MainThread] Loaded converter: CONVERTER_gz_to_uncompressed +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:36,085 [pN:main,p:78505,tN:MainThread] Loaded converter: lped2fpedconvert +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:36,086 [pN:main,p:78505,tN:MainThread] Loaded converter: lped2pbedconvert +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:36,087 [pN:main,p:78505,tN:MainThread] Loaded converter: pbed2lpedconvert +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:36,088 [pN:main,p:78505,tN:MainThread] Loaded converter: pbed2ldindepconvert +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:36,089 [pN:main,p:78505,tN:MainThread] Loaded converter: CONVERTER_uncompressed_to_gz +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:36,091 [pN:main,p:78505,tN:MainThread] Loaded converter: CONVERTER_gz_to_uncompressed +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:36,092 [pN:main,p:78505,tN:MainThread] Loaded converter: CONVERTER_biom +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:36,094 [pN:main,p:78505,tN:MainThread] Loaded converter: CONVERTER_biom +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:36,099 [pN:main,p:78505,tN:MainThread] Loaded converter: CONVERTER_molecules +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:36,104 [pN:main,p:78505,tN:MainThread] Loaded converter: CONVERTER_molecules +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:36,109 [pN:main,p:78505,tN:MainThread] Loaded converter: CONVERTER_molecules +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:36,110 [pN:main,p:78505,tN:MainThread] Loaded converter: CONVERTER_SMILES_to_MOL +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:36,115 [pN:main,p:78505,tN:MainThread] Loaded converter: CONVERTER_molecules +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:36,116 [pN:main,p:78505,tN:MainThread] Loaded converter: CONVERTER_smiles_to_smiles +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:36,121 [pN:main,p:78505,tN:MainThread] Loaded converter: CONVERTER_molecules +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:36,126 [pN:main,p:78505,tN:MainThread] Loaded converter: CONVERTER_molecules +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:36,131 [pN:main,p:78505,tN:MainThread] Loaded converter: CONVERTER_molecules +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:36,136 [pN:main,p:78505,tN:MainThread] Loaded converter: CONVERTER_molecules +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:36,141 [pN:main,p:78505,tN:MainThread] Loaded converter: CONVERTER_molecules +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:36,146 [pN:main,p:78505,tN:MainThread] Loaded converter: CONVERTER_molecules +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:36,147 [pN:main,p:78505,tN:MainThread] Loaded converter: CONVERTER_inchi_to_mol +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:36,152 [pN:main,p:78505,tN:MainThread] Loaded converter: CONVERTER_molecules +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:36,157 [pN:main,p:78505,tN:MainThread] Loaded converter: CONVERTER_molecules +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:36,163 [pN:main,p:78505,tN:MainThread] Loaded converter: CONVERTER_molecules +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:36,168 [pN:main,p:78505,tN:MainThread] Loaded converter: CONVERTER_molecules +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:36,173 [pN:main,p:78505,tN:MainThread] Loaded converter: CONVERTER_molecules +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:36,178 [pN:main,p:78505,tN:MainThread] Loaded converter: CONVERTER_molecules +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:36,183 [pN:main,p:78505,tN:MainThread] Loaded converter: CONVERTER_molecules +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:36,188 [pN:main,p:78505,tN:MainThread] Loaded converter: CONVERTER_molecules +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:36,193 [pN:main,p:78505,tN:MainThread] Loaded converter: CONVERTER_molecules +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:36,198 [pN:main,p:78505,tN:MainThread] Loaded converter: CONVERTER_molecules +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:36,199 [pN:main,p:78505,tN:MainThread] Loaded converter: CONVERTER_mol2_to_mol +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:36,204 [pN:main,p:78505,tN:MainThread] Loaded converter: CONVERTER_molecules +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:36,206 [pN:main,p:78505,tN:MainThread] Loaded converter: CONVERTER_cml_to_smiles +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:36,211 [pN:main,p:78505,tN:MainThread] Loaded converter: CONVERTER_molecules +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:36,216 [pN:main,p:78505,tN:MainThread] Loaded converter: CONVERTER_molecules +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:36,221 [pN:main,p:78505,tN:MainThread] Loaded converter: CONVERTER_molecules +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:36,223 [pN:main,p:78505,tN:MainThread] Loaded converter: CONVERTER_Pdb_to_Gro_0 +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:36,224 [pN:main,p:78505,tN:MainThread] Loaded converter: CONVERTER_mdconvert +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:36,226 [pN:main,p:78505,tN:MainThread] Loaded converter: CONVERTER_mdconvert +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:36,228 [pN:main,p:78505,tN:MainThread] Loaded converter: CONVERTER_mdconvert +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:36,231 [pN:main,p:78505,tN:MainThread] Loaded converter: CONVERTER_mdconvert +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:36,233 [pN:main,p:78505,tN:MainThread] Loaded converter: CONVERTER_mdconvert +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:36,235 [pN:main,p:78505,tN:MainThread] Loaded converter: CONVERTER_mdconvert +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:36,236 [pN:main,p:78505,tN:MainThread] Loaded converter: CONVERTER_Gro_to_Pdb_0 +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:36,237 [pN:main,p:78505,tN:MainThread] Loaded converter: CONVERTER_ref_to_seq_taxomony +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:36,238 [pN:main,p:78505,tN:MainThread] Loaded converter: CONVERTER_neostorezip_to_neostore +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:36,240 [pN:main,p:78505,tN:MainThread] Loaded external metadata tool: __SET_METADATA__ +galaxy.tools.special_tools DEBUG 2024-02-23 14:21:36,241 [pN:main,p:78505,tN:MainThread] Loaded history export tool: __EXPORT_HISTORY__ +galaxy.tools.special_tools DEBUG 2024-02-23 14:21:36,242 [pN:main,p:78505,tN:MainThread] Loaded history export to uri tool: __EXPORT_HISTORY_TO_URI__ +galaxy.tools.special_tools DEBUG 2024-02-23 14:21:36,243 [pN:main,p:78505,tN:MainThread] Loaded history import tool: __IMPORT_HISTORY__ +galaxy.tools.special_tools DEBUG 2024-02-23 14:21:36,244 [pN:main,p:78505,tN:MainThread] Loaded data fetch tool: __DATA_FETCH__ +galaxy.visualization.plugins.registry INFO 2024-02-23 14:21:36,245 [pN:main,p:78505,tN:MainThread] VisualizationsRegistry, loaded plugin: PCA_3Dplot +galaxy.visualization.plugins.registry INFO 2024-02-23 14:21:36,246 [pN:main,p:78505,tN:MainThread] VisualizationsRegistry, loaded plugin: aequatus +galaxy.visualization.plugins.registry INFO 2024-02-23 14:21:36,247 [pN:main,p:78505,tN:MainThread] VisualizationsRegistry, loaded plugin: annotate_image +galaxy.visualization.plugins.config_parser INFO 2024-02-23 14:21:36,248 [pN:main,p:78505,tN:MainThread] template syntax is deprecated: use entry_point instead +galaxy.visualization.plugins.registry INFO 2024-02-23 14:21:36,248 [pN:main,p:78505,tN:MainThread] VisualizationsRegistry, loaded plugin: chiraviz +galaxy.visualization.plugins.config_parser INFO 2024-02-23 14:21:36,249 [pN:main,p:78505,tN:MainThread] Visualizations plugin disabled: Circster. Skipping... +galaxy.visualization.plugins.config_parser INFO 2024-02-23 14:21:36,249 [pN:main,p:78505,tN:MainThread] template syntax is deprecated: use entry_point instead +galaxy.visualization.plugins.registry INFO 2024-02-23 14:21:36,249 [pN:main,p:78505,tN:MainThread] VisualizationsRegistry, loaded plugin: csg +galaxy.visualization.plugins.registry INFO 2024-02-23 14:21:36,250 [pN:main,p:78505,tN:MainThread] VisualizationsRegistry, loaded plugin: cytoscape +galaxy.visualization.plugins.registry INFO 2024-02-23 14:21:36,251 [pN:main,p:78505,tN:MainThread] VisualizationsRegistry, loaded plugin: drawrna +galaxy.visualization.plugins.registry INFO 2024-02-23 14:21:36,252 [pN:main,p:78505,tN:MainThread] VisualizationsRegistry, loaded plugin: editor +galaxy.visualization.plugins.registry INFO 2024-02-23 14:21:36,253 [pN:main,p:78505,tN:MainThread] VisualizationsRegistry, loaded plugin: example +galaxy.visualization.plugins.config_parser INFO 2024-02-23 14:21:36,254 [pN:main,p:78505,tN:MainThread] template syntax is deprecated: use entry_point instead +galaxy.visualization.plugins.registry INFO 2024-02-23 14:21:36,255 [pN:main,p:78505,tN:MainThread] VisualizationsRegistry, loaded plugin: fits_image_viewer +galaxy.visualization.plugins.config_parser INFO 2024-02-23 14:21:36,256 [pN:main,p:78505,tN:MainThread] template syntax is deprecated: use entry_point instead +galaxy.visualization.plugins.registry INFO 2024-02-23 14:21:36,256 [pN:main,p:78505,tN:MainThread] VisualizationsRegistry, loaded plugin: graphviz +galaxy.visualization.plugins.registry INFO 2024-02-23 14:21:36,256 [pN:main,p:78505,tN:MainThread] VisualizationsRegistry, loaded plugin: h5web +galaxy.visualization.plugins.registry INFO 2024-02-23 14:21:36,259 [pN:main,p:78505,tN:MainThread] VisualizationsRegistry, loaded plugin: heatmap_cluster +galaxy.visualization.plugins.registry INFO 2024-02-23 14:21:36,261 [pN:main,p:78505,tN:MainThread] VisualizationsRegistry, loaded plugin: heatmap_default +galaxy.visualization.plugins.config_parser INFO 2024-02-23 14:21:36,261 [pN:main,p:78505,tN:MainThread] template syntax is deprecated: use entry_point instead +galaxy.visualization.plugins.registry INFO 2024-02-23 14:21:36,261 [pN:main,p:78505,tN:MainThread] VisualizationsRegistry, loaded plugin: hivtrace +galaxy.visualization.plugins.config_parser INFO 2024-02-23 14:21:36,262 [pN:main,p:78505,tN:MainThread] template syntax is deprecated: use entry_point instead +galaxy.visualization.plugins.registry INFO 2024-02-23 14:21:36,262 [pN:main,p:78505,tN:MainThread] VisualizationsRegistry, loaded plugin: hyphyvision +galaxy.visualization.plugins.registry INFO 2024-02-23 14:21:36,264 [pN:main,p:78505,tN:MainThread] VisualizationsRegistry, loaded plugin: jqplot_bar +galaxy.visualization.plugins.registry INFO 2024-02-23 14:21:36,267 [pN:main,p:78505,tN:MainThread] VisualizationsRegistry, loaded plugin: jqplot_box +galaxy.visualization.plugins.registry INFO 2024-02-23 14:21:36,269 [pN:main,p:78505,tN:MainThread] VisualizationsRegistry, loaded plugin: jqplot_histogram +galaxy.visualization.plugins.registry INFO 2024-02-23 14:21:36,271 [pN:main,p:78505,tN:MainThread] VisualizationsRegistry, loaded plugin: jqplot_line +galaxy.visualization.plugins.registry INFO 2024-02-23 14:21:36,273 [pN:main,p:78505,tN:MainThread] VisualizationsRegistry, loaded plugin: jqplot_scatter +galaxy.visualization.plugins.config_parser INFO 2024-02-23 14:21:36,273 [pN:main,p:78505,tN:MainThread] template syntax is deprecated: use entry_point instead +galaxy.visualization.plugins.registry INFO 2024-02-23 14:21:36,273 [pN:main,p:78505,tN:MainThread] VisualizationsRegistry, loaded plugin: audio_player +galaxy.visualization.plugins.config_parser INFO 2024-02-23 14:21:36,274 [pN:main,p:78505,tN:MainThread] template syntax is deprecated: use entry_point instead +galaxy.visualization.plugins.registry INFO 2024-02-23 14:21:36,274 [pN:main,p:78505,tN:MainThread] VisualizationsRegistry, loaded plugin: video_player +galaxy.visualization.plugins.registry INFO 2024-02-23 14:21:36,274 [pN:main,p:78505,tN:MainThread] VisualizationsRegistry, loaded plugin: msa +galaxy.visualization.plugins.config_parser INFO 2024-02-23 14:21:36,275 [pN:main,p:78505,tN:MainThread] template syntax is deprecated: use entry_point instead +galaxy.visualization.plugins.registry INFO 2024-02-23 14:21:36,276 [pN:main,p:78505,tN:MainThread] VisualizationsRegistry, loaded plugin: mvpapp +galaxy.visualization.plugins.registry INFO 2024-02-23 14:21:36,277 [pN:main,p:78505,tN:MainThread] VisualizationsRegistry, loaded plugin: ngl +galaxy.visualization.plugins.registry INFO 2024-02-23 14:21:36,278 [pN:main,p:78505,tN:MainThread] VisualizationsRegistry, loaded plugin: nora +galaxy.visualization.plugins.registry INFO 2024-02-23 14:21:36,280 [pN:main,p:78505,tN:MainThread] VisualizationsRegistry, loaded plugin: nvd3_bar +galaxy.visualization.plugins.registry INFO 2024-02-23 14:21:36,282 [pN:main,p:78505,tN:MainThread] VisualizationsRegistry, loaded plugin: nvd3_bar_stacked +galaxy.visualization.plugins.registry INFO 2024-02-23 14:21:36,284 [pN:main,p:78505,tN:MainThread] VisualizationsRegistry, loaded plugin: nvd3_histogram +galaxy.visualization.plugins.registry INFO 2024-02-23 14:21:36,286 [pN:main,p:78505,tN:MainThread] VisualizationsRegistry, loaded plugin: nvd3_histogram_discrete +galaxy.visualization.plugins.registry INFO 2024-02-23 14:21:36,288 [pN:main,p:78505,tN:MainThread] VisualizationsRegistry, loaded plugin: nvd3_horizontal +galaxy.visualization.plugins.registry INFO 2024-02-23 14:21:36,290 [pN:main,p:78505,tN:MainThread] VisualizationsRegistry, loaded plugin: nvd3_horizontal_stacked +galaxy.visualization.plugins.registry INFO 2024-02-23 14:21:36,292 [pN:main,p:78505,tN:MainThread] VisualizationsRegistry, loaded plugin: nvd3_line +galaxy.visualization.plugins.registry INFO 2024-02-23 14:21:36,294 [pN:main,p:78505,tN:MainThread] VisualizationsRegistry, loaded plugin: nvd3_line_focus +galaxy.visualization.plugins.registry INFO 2024-02-23 14:21:36,296 [pN:main,p:78505,tN:MainThread] VisualizationsRegistry, loaded plugin: nvd3_pie +galaxy.visualization.plugins.registry INFO 2024-02-23 14:21:36,298 [pN:main,p:78505,tN:MainThread] VisualizationsRegistry, loaded plugin: nvd3_scatter +galaxy.visualization.plugins.registry INFO 2024-02-23 14:21:36,300 [pN:main,p:78505,tN:MainThread] VisualizationsRegistry, loaded plugin: nvd3_stackedarea +galaxy.visualization.plugins.registry INFO 2024-02-23 14:21:36,302 [pN:main,p:78505,tN:MainThread] VisualizationsRegistry, loaded plugin: nvd3_stackedarea_full +galaxy.visualization.plugins.registry INFO 2024-02-23 14:21:36,304 [pN:main,p:78505,tN:MainThread] VisualizationsRegistry, loaded plugin: nvd3_stackedarea_stream +galaxy.visualization.plugins.registry INFO 2024-02-23 14:21:36,305 [pN:main,p:78505,tN:MainThread] VisualizationsRegistry, loaded plugin: openlayers +galaxy.visualization.plugins.registry INFO 2024-02-23 14:21:36,306 [pN:main,p:78505,tN:MainThread] VisualizationsRegistry, loaded plugin: openseadragon +galaxy.visualization.plugins.registry INFO 2024-02-23 14:21:36,307 [pN:main,p:78505,tN:MainThread] VisualizationsRegistry, loaded plugin: phylocanvas +galaxy.visualization.plugins.registry INFO 2024-02-23 14:21:36,308 [pN:main,p:78505,tN:MainThread] VisualizationsRegistry, loaded plugin: phyloviz +galaxy.visualization.plugins.registry INFO 2024-02-23 14:21:36,309 [pN:main,p:78505,tN:MainThread] VisualizationsRegistry, loaded plugin: pv +galaxy.visualization.plugins.registry INFO 2024-02-23 14:21:36,310 [pN:main,p:78505,tN:MainThread] VisualizationsRegistry, loaded plugin: scatterplot +galaxy.visualization.plugins.config_parser INFO 2024-02-23 14:21:36,310 [pN:main,p:78505,tN:MainThread] Visualizations plugin disabled: Sweepster. Skipping... +galaxy.visualization.plugins.registry INFO 2024-02-23 14:21:36,311 [pN:main,p:78505,tN:MainThread] VisualizationsRegistry, loaded plugin: trackster +galaxy.visualization.plugins.registry INFO 2024-02-23 14:21:36,311 [pN:main,p:78505,tN:MainThread] VisualizationsRegistry, loaded plugin: ts_visjs +galaxy.visualization.plugins.config_parser INFO 2024-02-23 14:21:36,312 [pN:main,p:78505,tN:MainThread] template syntax is deprecated: use entry_point instead +galaxy.visualization.plugins.registry INFO 2024-02-23 14:21:36,312 [pN:main,p:78505,tN:MainThread] VisualizationsRegistry, loaded plugin: unipept +galaxy.visualization.plugins.registry INFO 2024-02-23 14:21:36,312 [pN:main,p:78505,tN:MainThread] VisualizationsRegistry, loaded plugin: venn +galaxy.tours._impl INFO 2024-02-23 14:21:36,337 [pN:main,p:78505,tN:MainThread] Loaded tour 'core.galaxy_ui' +galaxy.tours._impl INFO 2024-02-23 14:21:36,354 [pN:main,p:78505,tN:MainThread] Loaded tour 'core.deferred' +galaxy.tours._impl INFO 2024-02-23 14:21:36,366 [pN:main,p:78505,tN:MainThread] Loaded tour 'core.history' +galaxy.tours._impl INFO 2024-02-23 14:21:36,377 [pN:main,p:78505,tN:MainThread] Loaded tour 'core.windows' +galaxy.workflow.scheduling_manager INFO 2024-02-23 14:21:36,383 [pN:main,p:78505,tN:MainThread] No workflow schedulers plugin config file defined, using default scheduler. +galaxy.web_stack.handlers INFO 2024-02-23 14:21:36,383 [pN:main,p:78505,tN:MainThread] WorkflowSchedulingManager: No job handler assignment method is set, defaulting to 'HANDLER_ASSIGNMENT_METHODS.DB_SKIP_LOCKED', set the `assign_with` attribute on <handlers> to override the default +galaxy.workflow.scheduling_manager DEBUG 2024-02-23 14:21:36,384 [pN:main,p:78505,tN:MainThread] Starting workflow schedulers +galaxy.app INFO 2024-02-23 14:21:36,386 [pN:main,p:78505,tN:MainThread] Galaxy app startup finished (2552.949 ms) +galaxy.web.framework.base DEBUG 2024-02-23 14:21:36,413 [pN:main,p:78505,tN:MainThread] Enabling 'user' controller, class: User +galaxy.web.framework.base DEBUG 2024-02-23 14:21:36,414 [pN:main,p:78505,tN:MainThread] Enabling 'data_manager' controller, class: DataManager +galaxy.web.framework.base DEBUG 2024-02-23 14:21:36,415 [pN:main,p:78505,tN:MainThread] Enabling 'async' controller, class: ASync +galaxy.web.framework.base DEBUG 2024-02-23 14:21:36,415 [pN:main,p:78505,tN:MainThread] Enabling 'tag' controller, class: TagsController +galaxy.web.framework.base DEBUG 2024-02-23 14:21:36,420 [pN:main,p:78505,tN:MainThread] Enabling 'page' controller, class: PageController +galaxy.web.framework.base DEBUG 2024-02-23 14:21:36,421 [pN:main,p:78505,tN:MainThread] Enabling 'root' controller, class: RootController +galaxy.web.framework.base DEBUG 2024-02-23 14:21:36,421 [pN:main,p:78505,tN:MainThread] Enabling 'tool_runner' controller, class: ToolRunner +galaxy.web.framework.base DEBUG 2024-02-23 14:21:36,422 [pN:main,p:78505,tN:MainThread] Enabling 'error' controller, class: Error +galaxy.web.framework.base DEBUG 2024-02-23 14:21:36,423 [pN:main,p:78505,tN:MainThread] Enabling 'forms' controller, class: Forms +galaxy.web.framework.base DEBUG 2024-02-23 14:21:36,437 [pN:main,p:78505,tN:MainThread] Enabling 'admin_toolshed' controller, class: AdminGalaxy +galaxy.web.framework.base DEBUG 2024-02-23 14:21:36,438 [pN:main,p:78505,tN:MainThread] Enabling 'admin_toolshed' controller, class: AdminToolshed +galaxy.web.framework.base DEBUG 2024-02-23 14:21:36,439 [pN:main,p:78505,tN:MainThread] Enabling 'visualization' controller, class: VisualizationController +galaxy.web.framework.base DEBUG 2024-02-23 14:21:36,440 [pN:main,p:78505,tN:MainThread] Enabling 'shed_tool_static' controller, class: ShedToolStatic +galaxy.web.framework.base DEBUG 2024-02-23 14:21:36,440 [pN:main,p:78505,tN:MainThread] Enabling 'authnz' controller, class: JSAppLauncher +galaxy.web.framework.base DEBUG 2024-02-23 14:21:36,441 [pN:main,p:78505,tN:MainThread] Enabling 'authnz' controller, class: OIDC +galaxy.web.framework.base DEBUG 2024-02-23 14:21:36,442 [pN:main,p:78505,tN:MainThread] Enabling 'workflow' controller, class: WorkflowController +galaxy.web.framework.base DEBUG 2024-02-23 14:21:36,444 [pN:main,p:78505,tN:MainThread] Enabling 'history' controller, class: HistoryController +galaxy.web.framework.base DEBUG 2024-02-23 14:21:36,474 [pN:main,p:78505,tN:MainThread] Enabling 'dataset' controller, class: DatasetInterface +galaxy.web.framework.base DEBUG 2024-02-23 14:21:36,474 [pN:main,p:78505,tN:MainThread] Enabling 'admin' controller, class: AdminGalaxy +galaxy.web.framework.base DEBUG 2024-02-23 14:21:37,175 [pN:main,p:78505,tN:MainThread] Enabling 'library_datasets' API controller, class: LibraryDatasetsController +galaxy.web.framework.base DEBUG 2024-02-23 14:21:37,328 [pN:main,p:78505,tN:MainThread] Enabling 'jobs' API controller, class: JobController +galaxy.web.framework.base DEBUG 2024-02-23 14:21:37,448 [pN:main,p:78505,tN:MainThread] Enabling 'job_files' API controller, class: JobFilesAPIController +galaxy.web.framework.base DEBUG 2024-02-23 14:21:37,495 [pN:main,p:78505,tN:MainThread] Enabling 'toolshed' API controller, class: ToolShedController +galaxy.web.framework.base DEBUG 2024-02-23 14:21:37,511 [pN:main,p:78505,tN:MainThread] Enabling 'tools' API controller, class: ToolsController +galaxy.web.framework.base DEBUG 2024-02-23 14:21:37,632 [pN:main,p:78505,tN:MainThread] Enabling 'trs_consumer' API controller, class: TrsConsumeAPIController +galaxy.web.framework.base DEBUG 2024-02-23 14:21:37,633 [pN:main,p:78505,tN:MainThread] Enabling 'history_dataset_extended_metadata' API controller, class: HistoryDatasetExtendMetadataController +galaxy.web.framework.base DEBUG 2024-02-23 14:21:37,633 [pN:main,p:78505,tN:MainThread] Enabling 'library_dataset_extended_metadata' API controller, class: LibraryDatasetExtendMetadataController +galaxy.web.framework.base DEBUG 2024-02-23 14:21:37,634 [pN:main,p:78505,tN:MainThread] Enabling 'container_resolution' API controller, class: ContainerResolutionAPIController +galaxy.web.framework.base DEBUG 2024-02-23 14:21:37,634 [pN:main,p:78505,tN:MainThread] Enabling 'job_ports' API controller, class: JobPortsAPIController +galaxy.web.framework.base DEBUG 2024-02-23 14:21:37,635 [pN:main,p:78505,tN:MainThread] Enabling 'tool_dependencies' API controller, class: ToolDependenciesAPIController +galaxy.web.framework.base DEBUG 2024-02-23 14:21:37,775 [pN:main,p:78505,tN:MainThread] Enabling 'history_content_provenance' API controller, class: HDAProvenanceController +galaxy.web.framework.base DEBUG 2024-02-23 14:21:37,775 [pN:main,p:78505,tN:MainThread] Enabling 'ldda_provenance' API controller, class: LDDAProvenanceController +galaxy.web.framework.base DEBUG 2024-02-23 14:21:37,775 [pN:main,p:78505,tN:MainThread] Enabling 'tool_entry_points' API controller, class: ToolEntryPointsAPIController +galaxy.web.framework.base DEBUG 2024-02-23 14:21:37,909 [pN:main,p:78505,tN:MainThread] Enabling 'authenticate' API controller, class: AuthenticationController +galaxy.web.framework.base DEBUG 2024-02-23 14:21:38,315 [pN:main,p:78505,tN:MainThread] Enabling 'trs_search' API controller, class: TrsSearchAPIController +galaxy.web.framework.base DEBUG 2024-02-23 14:21:38,366 [pN:main,p:78505,tN:MainThread] Enabling 'tool_shed_repositories' API controller, class: ToolShedRepositoriesController +galaxy.web.framework.base DEBUG 2024-02-23 14:21:38,547 [pN:main,p:78505,tN:MainThread] Enabling 'forms' API controller, class: FormDefinitionAPIController +galaxy.web.framework.base DEBUG 2024-02-23 14:21:38,735 [pN:main,p:78505,tN:MainThread] Enabling 'workflows' API controller, class: WorkflowsAPIController +galaxy.web.framework.base DEBUG 2024-02-23 14:21:38,735 [pN:main,p:78505,tN:MainThread] Enabling 'uploads' API controller, class: UploadsAPIController +galaxy.web.framework.base DEBUG 2024-02-23 14:21:39,227 [pN:main,p:78505,tN:MainThread] Enabling 'history_annotations' API controller, class: HistoryAnnotationsController +galaxy.web.framework.base DEBUG 2024-02-23 14:21:39,227 [pN:main,p:78505,tN:MainThread] Enabling 'history_content_annotations' API controller, class: HistoryContentAnnotationsController +galaxy.web.framework.base DEBUG 2024-02-23 14:21:39,228 [pN:main,p:78505,tN:MainThread] Enabling 'workflow_annotations' API controller, class: WorkflowAnnotationsController +galaxy.web.framework.base DEBUG 2024-02-23 14:21:39,272 [pN:main,p:78505,tN:MainThread] Enabling 'visualizations' API controller, class: VisualizationsController +galaxy.web.framework.base DEBUG 2024-02-23 14:21:39,273 [pN:main,p:78505,tN:MainThread] Enabling 'sanitize_allow' API controller, class: SanitizeAllowController +galaxy.web.framework.base DEBUG 2024-02-23 14:21:39,273 [pN:main,p:78505,tN:MainThread] Enabling 'page_revisions' API controller, class: PageRevisionsController +galaxy.web.framework.base DEBUG 2024-02-23 14:21:39,345 [pN:main,p:78505,tN:MainThread] Enabling 'library_contents' API controller, class: LibraryContentsController +galaxy.web.framework.base DEBUG 2024-02-23 14:21:39,463 [pN:main,p:78505,tN:MainThread] Enabling 'users' API controller, class: UserAPIController +galaxy.web.framework.base DEBUG 2024-02-23 14:21:39,463 [pN:main,p:78505,tN:MainThread] Enabling 'cloudauthz' API controller, class: CloudAuthzController +galaxy.web.framework.base DEBUG 2024-02-23 14:21:39,464 [pN:main,p:78505,tN:MainThread] Enabling 'webhooks' API controller, class: WebhooksController +galaxy.web.framework.base DEBUG 2024-02-23 14:21:39,538 [pN:main,p:78505,tN:MainThread] Enabling 'plugins' API controller, class: PluginsController +galaxy.web.framework.base DEBUG 2024-02-23 14:21:39,573 [pN:main,p:78505,tN:MainThread] Enabling 'dynamic_tools' API controller, class: DynamicToolsController +2024-02-23 14:21:39,857 INFO success: celery entered RUNNING state, process has stayed up for > than 10 seconds (startsecs) +galaxy.webapps.util DEBUG 2024-02-23 14:21:39,857 [pN:main,p:78505,tN:MainThread] Enabling 'paste.httpexceptions' middleware +2024-02-23 14:21:39,858 INFO success: celery-beat entered RUNNING state, process has stayed up for > than 10 seconds (startsecs) +galaxy.webapps.util DEBUG 2024-02-23 14:21:39,857 [pN:main,p:78505,tN:MainThread] Enabling 'RemoteUser' middleware +galaxy.webapps.util DEBUG 2024-02-23 14:21:39,857 [pN:main,p:78505,tN:MainThread] Enabling 'ErrorMiddleware' middleware +galaxy.webapps.util DEBUG 2024-02-23 14:21:39,857 [pN:main,p:78505,tN:MainThread] Enabling 'TusMiddleware' middleware +galaxy.webapps.util DEBUG 2024-02-23 14:21:39,857 [pN:main,p:78505,tN:MainThread] Enabling 'XForwardedHostMiddleware' middleware +galaxy.webapps.util DEBUG 2024-02-23 14:21:39,857 [pN:main,p:78505,tN:MainThread] Enabling 'RequestIDMiddleware' middleware +galaxy.webapps.util DEBUG 2024-02-23 14:21:39,857 [pN:main,p:78505,tN:MainThread] Enabling 'build_url_map' middleware +galaxy.webapps.galaxy.buildapp DEBUG 2024-02-23 14:21:39,858 [pN:main,p:78505,tN:MainThread] Prior to webapp return, Galaxy thread <_MainThread(MainThread, started 139838623614784)> is alive. +/scratch/rico/galaxy/lib/galaxy/webapps/openapi/utils.py:463: UserWarning: Merging operation with id fetch_json_api_tools_fetch_post with operation with id fetch_form_api_tools_fetch_post. + warnings.warn(message) # noqa: B028 +[2024-02-23 14:21:41 -0500] [78505] [INFO] Starting gunicorn 21.2.0 +[2024-02-23 14:21:41 -0500] [78505] [INFO] Listening at: http://127.0.0.1:9090 (78505) +[2024-02-23 14:21:41 -0500] [78505] [INFO] Using worker: galaxy.webapps.galaxy.workers.Worker +[2024-02-23 14:21:41 -0500] [78709] [INFO] Booting worker with pid: 78709 +galaxy.web_stack DEBUG 2024-02-23 14:21:41,492 [pN:main.1,p:78709,tN:Thread-2] server_name set to: main.1 +galaxy.jobs.manager DEBUG 2024-02-23 14:21:41,493 [pN:main.1,p:78709,tN:Thread-2] Initializing job handler +galaxy.jobs INFO 2024-02-23 14:21:41,494 [pN:main.1,p:78709,tN:Thread-2] Handler 'main.1' will load all configured runner plugins +galaxy.jobs.runners.state_handler_factory DEBUG 2024-02-23 14:21:41,509 [pN:main.1,p:78709,tN:Thread-2] Loaded 'failure' state handler from module galaxy.jobs.runners.state_handlers.resubmit +galaxy.jobs DEBUG 2024-02-23 14:21:41,509 [pN:main.1,p:78709,tN:Thread-2] Loaded job runner 'galaxy.jobs.runners.local:LocalJobRunner' as 'local' +galaxy.jobs.handler DEBUG 2024-02-23 14:21:41,509 [pN:main.1,p:78709,tN:Thread-2] Loaded job runners plugins: local +galaxy.jobs.runners DEBUG 2024-02-23 14:21:41,510 [pN:main.1,p:78709,tN:Thread-2] Starting 4 LocalRunner workers +galaxy.jobs.handler DEBUG 2024-02-23 14:21:41,514 [pN:main.1,p:78709,tN:Thread-2] Handler queue starting for jobs assigned to handler: main.1 +galaxy.jobs.handler INFO 2024-02-23 14:21:41,546 [pN:main.1,p:78709,tN:JobHandlerQueue.monitor_thread] Handler job grabber initialized with 'HANDLER_ASSIGNMENT_METHODS.DB_SKIP_LOCKED' assignment method for handler 'main.1', tag(s): +galaxy.jobs.handler INFO 2024-02-23 14:21:41,546 [pN:main.1,p:78709,tN:Thread-2] job handler queue started +galaxy.jobs.handler INFO 2024-02-23 14:21:41,553 [pN:main.1,p:78709,tN:Thread-2] job handler stop queue started +galaxy.jobs.handler INFO 2024-02-23 14:21:41,556 [pN:main.1,p:78709,tN:WorkflowRequestMonitor.monitor_thread] Handler job grabber initialized with 'HANDLER_ASSIGNMENT_METHODS.DB_SKIP_LOCKED' assignment method for handler 'main.1', tag(s): None, _default_ +galaxy.queue_worker INFO 2024-02-23 14:21:41,575 [pN:main.1,p:78709,tN:Thread-2] Binding and starting galaxy control worker for main.1 +galaxy.queue_worker DEBUG 2024-02-23 14:21:41,587 [pN:main.1,p:78709,tN:Thread-2] Executing toolbox reload on 'main.1' +galaxy.util WARNING 2024-02-23 14:21:41,644 [pN:main.1,p:78709,tN:Thread-2] directory not found: /scratch/rico/galaxy/lib/galaxy/util/../../../config/plugins/activities +[2024-02-23 14:21:41 -0500] [78709] [INFO] Started server process [78709] +[2024-02-23 14:21:41 -0500] [78709] [INFO] Waiting for application startup. +[2024-02-23 14:21:41 -0500] [78709] [INFO] Application startup complete. +galaxy.tools WARNING 2024-02-23 14:21:41,668 [pN:main.1,p:78709,tN:Thread-2] The default shed tool config file (/tmp/tmpqrlh6ih1/shed_tool_conf.xml) has been added to the tool_config_file option, if this is not the desired behavior, please set shed_tool_config_file to your primary shed-enabled tool config file +galaxy.tool_util.toolbox.base INFO 2024-02-23 14:21:41,668 [pN:main.1,p:78709,tN:Thread-2] Parsing the tool configuration /tmp/tmpqrlh6ih1/tool_conf.xml +galaxy.tool_util.toolbox.base DEBUG 2024-02-23 14:21:41,669 [pN:main.1,p:78709,tN:Thread-2] Tool path for tool configuration /tmp/tmpqrlh6ih1/tool_conf.xml is None +galaxy.tools WARNING 2024-02-23 14:21:41,670 [pN:main.1,p:78709,tN:Thread-2] The default shed tool config file (/tmp/tmpqrlh6ih1/shed_tool_conf.xml) has been added to the tool_config_file option, if this is not the desired behavior, please set shed_tool_config_file to your primary shed-enabled tool config file +galaxy.tool_util.toolbox.base INFO 2024-02-23 14:21:41,670 [pN:main.1,p:78709,tN:Thread-2] Parsing the tool configuration /tmp/tmpqrlh6ih1/shed_tools_conf.xml +galaxy.model.database_heartbeat DEBUG 2024-02-23 14:21:41,678 [pN:main.1,p:78709,tN:database_heartbeart_main.1.thread] main.1 is config watcher +galaxy.tool_util.toolbox.base DEBUG 2024-02-23 14:21:41,679 [pN:main.1,p:78709,tN:Thread-2] Tool path for shed tool configuration /tmp/tmpqrlh6ih1/shed_tools_conf.xml is /tmp/tmpqrlh6ih1/shed_tools +galaxy.tools WARNING 2024-02-23 14:21:41,680 [pN:main.1,p:78709,tN:Thread-2] The default shed tool config file (/tmp/tmpqrlh6ih1/shed_tool_conf.xml) has been added to the tool_config_file option, if this is not the desired behavior, please set shed_tool_config_file to your primary shed-enabled tool config file +galaxy.tool_util.toolbox.base INFO 2024-02-23 14:21:41,680 [pN:main.1,p:78709,tN:Thread-2] Parsing the tool configuration /tmp/tmpqrlh6ih1/empty_tool_conf.xml +galaxy.tool_util.toolbox.base DEBUG 2024-02-23 14:21:41,683 [pN:main.1,p:78709,tN:Thread-2] Tool path for tool configuration /tmp/tmpqrlh6ih1/empty_tool_conf.xml is None +galaxy.tool_util.toolbox.base DEBUG 2024-02-23 14:21:41,684 [pN:main.1,p:78709,tN:Thread-2] Reading tools from config files finished (15.967 ms) +galaxy.tool_util.toolbox.base DEBUG 2024-02-23 14:21:41,684 [pN:main.1,p:78709,tN:Thread-2] Loaded tool id: upload1, version: 1.1.7 into tool panel.. +galaxy.tool_util.toolbox.base DEBUG 2024-02-23 14:21:41,684 [pN:main.1,p:78709,tN:Thread-2] Loading tool panel finished (0.472 ms) +galaxy.tool_util.toolbox.base DEBUG 2024-02-23 14:21:41,689 [pN:main.1,p:78709,tN:Thread-2] Loaded tool id: upload1, version: 1.1.7 into tool panel.. +galaxy.tool_util.toolbox.views.edam DEBUG 2024-02-23 14:21:41,690 [pN:main.1,p:78709,tN:Thread-2] Loading EDAM tool panel finished (5.481 ms) +galaxy.tool_util.toolbox.base DEBUG 2024-02-23 14:21:41,692 [pN:main.1,p:78709,tN:Thread-2] Loaded tool id: upload1, version: 1.1.7 into tool panel.. +galaxy.tool_util.toolbox.views.edam DEBUG 2024-02-23 14:21:41,692 [pN:main.1,p:78709,tN:Thread-2] Loading EDAM tool panel finished (1.670 ms) +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:41,692 [pN:main.1,p:78709,tN:Thread-2] Loaded converter: CONVERTER_uncompressed_to_gz +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:41,692 [pN:main.1,p:78709,tN:Thread-2] Loaded converter: CONVERTER_gz_to_uncompressed +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:41,693 [pN:main.1,p:78709,tN:Thread-2] Loaded converter: CONVERTER_uncompressed_to_gz +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:41,693 [pN:main.1,p:78709,tN:Thread-2] Loaded converter: CONVERTER_gz_to_uncompressed +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:41,693 [pN:main.1,p:78709,tN:Thread-2] Loaded converter: CONVERTER_uncompressed_to_gz +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:41,693 [pN:main.1,p:78709,tN:Thread-2] Loaded converter: CONVERTER_gz_to_uncompressed +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:41,693 [pN:main.1,p:78709,tN:Thread-2] Loaded converter: CONVERTER_Bam_Bai_0 +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:41,693 [pN:main.1,p:78709,tN:Thread-2] Loaded converter: CONVERTER_bam_to_bigwig_0 +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:41,693 [pN:main.1,p:78709,tN:Thread-2] Loaded converter: CONVERTER_bam_to_qname_sorted_bam +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:41,694 [pN:main.1,p:78709,tN:Thread-2] Loaded converter: CONVERTER_bam_to_bigwig_0 +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:41,694 [pN:main.1,p:78709,tN:Thread-2] Loaded converter: CONVERTER_bam_to_coodinate_sorted_bam +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:41,694 [pN:main.1,p:78709,tN:Thread-2] Loaded converter: CONVERTER_bam_to_qname_sorted_bam +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:41,694 [pN:main.1,p:78709,tN:Thread-2] Loaded converter: CONVERTER_cram_to_bam_0 +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:41,695 [pN:main.1,p:78709,tN:Thread-2] Loaded converter: CONVERTER_bed_to_gff_0 +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:41,695 [pN:main.1,p:78709,tN:Thread-2] Loaded converter: CONVERTER_interval_to_bgzip_0 +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:41,695 [pN:main.1,p:78709,tN:Thread-2] Loaded converter: CONVERTER_interval_to_tabix_0 +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:41,695 [pN:main.1,p:78709,tN:Thread-2] Loaded converter: CONVERTER_bed_gff_or_vcf_to_bigwig_0 +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:41,695 [pN:main.1,p:78709,tN:Thread-2] Loaded converter: CONVERTER_bed_to_fli_0 +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:41,696 [pN:main.1,p:78709,tN:Thread-2] Loaded converter: CONVERTER_bedgraph_to_bigwig +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:41,696 [pN:main.1,p:78709,tN:Thread-2] Loaded converter: CONVERTER_len_to_linecount +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:41,696 [pN:main.1,p:78709,tN:Thread-2] Loaded converter: CONVERTER_parquet_to_csv +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:41,696 [pN:main.1,p:78709,tN:Thread-2] Loaded converter: bigwigtowig +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:41,696 [pN:main.1,p:78709,tN:Thread-2] Loaded converter: CONVERTER_interval_to_bgzip_0 +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:41,696 [pN:main.1,p:78709,tN:Thread-2] Loaded converter: CONVERTER_interval_to_tabix_0 +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:41,706 [pN:main.1,p:78709,tN:Thread-2] Loaded converter: CONVERTER_bed_gff_or_vcf_to_bigwig_0 +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:41,706 [pN:main.1,p:78709,tN:Thread-2] Loaded converter: csv_to_tabular +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:41,707 [pN:main.1,p:78709,tN:Thread-2] Loaded converter: tabular_to_csv +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:41,707 [pN:main.1,p:78709,tN:Thread-2] Loaded converter: CONVERTER_fasta_to_tabular +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:41,707 [pN:main.1,p:78709,tN:Thread-2] Loaded converter: CONVERTER_fasta_to_bowtie_base_index +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:41,707 [pN:main.1,p:78709,tN:Thread-2] Loaded converter: CONVERTER_fasta_to_bowtie_color_index +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:41,707 [pN:main.1,p:78709,tN:Thread-2] Loaded converter: CONVERTER_fasta_to_2bit +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:41,707 [pN:main.1,p:78709,tN:Thread-2] Loaded converter: CONVERTER_fasta_to_len +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:41,707 [pN:main.1,p:78709,tN:Thread-2] Loaded converter: CONVERTER_fasta_to_fai +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:41,708 [pN:main.1,p:78709,tN:Thread-2] Loaded converter: CONVERTER_uncompressed_to_gz +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:41,708 [pN:main.1,p:78709,tN:Thread-2] Loaded converter: CONVERTER_gz_to_uncompressed +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:41,708 [pN:main.1,p:78709,tN:Thread-2] Loaded converter: CONVERTER_fastq_to_fqtoc0 +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:41,708 [pN:main.1,p:78709,tN:Thread-2] Loaded converter: CONVERTER_uncompressed_to_gz +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:41,708 [pN:main.1,p:78709,tN:Thread-2] Loaded converter: CONVERTER_gz_to_uncompressed +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:41,708 [pN:main.1,p:78709,tN:Thread-2] Loaded converter: CONVERTER_bz2_to_uncompressed +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:41,709 [pN:main.1,p:78709,tN:Thread-2] Loaded converter: CONVERTER_fastq_to_fqtoc0 +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:41,709 [pN:main.1,p:78709,tN:Thread-2] Loaded converter: CONVERTER_uncompressed_to_gz +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:41,709 [pN:main.1,p:78709,tN:Thread-2] Loaded converter: CONVERTER_gz_to_uncompressed +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:41,709 [pN:main.1,p:78709,tN:Thread-2] Loaded converter: CONVERTER_bz2_to_uncompressed +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:41,709 [pN:main.1,p:78709,tN:Thread-2] Loaded converter: CONVERTER_fastq_to_fqtoc0 +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:41,709 [pN:main.1,p:78709,tN:Thread-2] Loaded converter: CONVERTER_uncompressed_to_gz +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:41,709 [pN:main.1,p:78709,tN:Thread-2] Loaded converter: CONVERTER_gz_to_uncompressed +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:41,710 [pN:main.1,p:78709,tN:Thread-2] Loaded converter: CONVERTER_bz2_to_uncompressed +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:41,710 [pN:main.1,p:78709,tN:Thread-2] Loaded converter: CONVERTER_fastq_to_fqtoc0 +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:41,710 [pN:main.1,p:78709,tN:Thread-2] Loaded converter: CONVERTER_uncompressed_to_gz +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:41,710 [pN:main.1,p:78709,tN:Thread-2] Loaded converter: CONVERTER_gz_to_uncompressed +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:41,710 [pN:main.1,p:78709,tN:Thread-2] Loaded converter: CONVERTER_bz2_to_uncompressed +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:41,710 [pN:main.1,p:78709,tN:Thread-2] Loaded converter: CONVERTER_fastq_to_fqtoc0 +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:41,710 [pN:main.1,p:78709,tN:Thread-2] Loaded converter: CONVERTER_uncompressed_to_gz +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:41,710 [pN:main.1,p:78709,tN:Thread-2] Loaded converter: CONVERTER_gz_to_uncompressed +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:41,711 [pN:main.1,p:78709,tN:Thread-2] Loaded converter: CONVERTER_bz2_to_uncompressed +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:41,711 [pN:main.1,p:78709,tN:Thread-2] Loaded converter: CONVERTER_gff_to_bed_0 +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:41,711 [pN:main.1,p:78709,tN:Thread-2] Loaded converter: CONVERTER_gff_to_interval_index_0 +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:41,711 [pN:main.1,p:78709,tN:Thread-2] Loaded converter: CONVERTER_bed_gff_or_vcf_to_bigwig_0 +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:41,711 [pN:main.1,p:78709,tN:Thread-2] Loaded converter: CONVERTER_gff_to_fli_0 +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:41,712 [pN:main.1,p:78709,tN:Thread-2] Loaded converter: CONVERTER_interval_to_bgzip_0 +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:41,712 [pN:main.1,p:78709,tN:Thread-2] Loaded converter: CONVERTER_interval_to_tabix_0 +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:41,712 [pN:main.1,p:78709,tN:Thread-2] Loaded converter: CONVERTER_uncompressed_to_gz +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:41,712 [pN:main.1,p:78709,tN:Thread-2] Loaded converter: CONVERTER_gz_to_uncompressed +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:41,712 [pN:main.1,p:78709,tN:Thread-2] Loaded converter: CONVERTER_bz2_to_uncompressed +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:41,712 [pN:main.1,p:78709,tN:Thread-2] Loaded converter: CONVERTER_gff_to_interval_index_0 +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:41,713 [pN:main.1,p:78709,tN:Thread-2] Loaded converter: CONVERTER_bed_gff_or_vcf_to_bigwig_0 +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:41,713 [pN:main.1,p:78709,tN:Thread-2] Loaded converter: CONVERTER_interval_to_bed_0 +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:41,713 [pN:main.1,p:78709,tN:Thread-2] Loaded converter: CONVERTER_interval_to_bedstrict_0 +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:41,713 [pN:main.1,p:78709,tN:Thread-2] Loaded converter: CONVERTER_interval_to_bed6_0 +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:41,713 [pN:main.1,p:78709,tN:Thread-2] Loaded converter: CONVERTER_interval_to_bed12_0 +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:41,713 [pN:main.1,p:78709,tN:Thread-2] Loaded converter: CONVERTER_interval_to_bgzip_0 +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:41,713 [pN:main.1,p:78709,tN:Thread-2] Loaded converter: CONVERTER_interval_to_tabix_0 +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:41,713 [pN:main.1,p:78709,tN:Thread-2] Loaded converter: CONVERTER_interval_to_bigwig_0 +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:41,714 [pN:main.1,p:78709,tN:Thread-2] Loaded converter: CONVERTER_picard_interval_list_to_bed6 +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:41,714 [pN:main.1,p:78709,tN:Thread-2] Loaded converter: CONVERTER_tar_to_directory +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:41,714 [pN:main.1,p:78709,tN:Thread-2] Loaded converter: CONVERTER_uncompressed_to_gz +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:41,714 [pN:main.1,p:78709,tN:Thread-2] Loaded converter: CONVERTER_gz_to_uncompressed +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:41,714 [pN:main.1,p:78709,tN:Thread-2] Loaded converter: CONVERTER_uncompressed_to_gz +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:41,714 [pN:main.1,p:78709,tN:Thread-2] Loaded converter: CONVERTER_gz_to_uncompressed +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:41,714 [pN:main.1,p:78709,tN:Thread-2] Loaded converter: CONVERTER_uncompressed_to_gz +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:41,714 [pN:main.1,p:78709,tN:Thread-2] Loaded converter: CONVERTER_gz_to_uncompressed +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:41,715 [pN:main.1,p:78709,tN:Thread-2] Loaded converter: CONVERTER_maf_to_fasta_0 +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:41,715 [pN:main.1,p:78709,tN:Thread-2] Loaded converter: CONVERTER_maf_to_interval_0 +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:41,715 [pN:main.1,p:78709,tN:Thread-2] Loaded converter: CONVERTER_interval_to_tabix_0 +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:41,715 [pN:main.1,p:78709,tN:Thread-2] Loaded converter: CONVERTER_interval_to_bgzip_0 +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:41,715 [pN:main.1,p:78709,tN:Thread-2] Loaded converter: CONVERTER_bed_gff_or_vcf_to_bigwig_0 +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:41,716 [pN:main.1,p:78709,tN:Thread-2] Loaded converter: CONVERTER_interval_to_bgzip_0 +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:41,716 [pN:main.1,p:78709,tN:Thread-2] Loaded converter: CONVERTER_interval_to_tabix_0 +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:41,716 [pN:main.1,p:78709,tN:Thread-2] Loaded converter: CONVERTER_sam_to_unsorted_bam +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:41,716 [pN:main.1,p:78709,tN:Thread-2] Loaded converter: CONVERTER_bam_to_coodinate_sorted_bam +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:41,716 [pN:main.1,p:78709,tN:Thread-2] Loaded converter: CONVERTER_bam_to_qname_sorted_bam +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:41,716 [pN:main.1,p:78709,tN:Thread-2] Loaded converter: CONVERTER_sam_to_bigwig_0 +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:41,717 [pN:main.1,p:78709,tN:Thread-2] Loaded converter: tabular_to_dbnsfp +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:41,717 [pN:main.1,p:78709,tN:Thread-2] Loaded converter: tabular_to_csv +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:41,717 [pN:main.1,p:78709,tN:Thread-2] Loaded converter: CONVERTER_uncompressed_to_gz +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:41,717 [pN:main.1,p:78709,tN:Thread-2] Loaded converter: CONVERTER_gz_to_uncompressed +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:41,717 [pN:main.1,p:78709,tN:Thread-2] Loaded converter: CONVERTER_interval_to_bgzip_0 +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:41,717 [pN:main.1,p:78709,tN:Thread-2] Loaded converter: CONVERTER_vcf_to_vcf_bgzip_0 +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:41,718 [pN:main.1,p:78709,tN:Thread-2] Loaded converter: CONVERTER_interval_to_tabix_0 +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:41,718 [pN:main.1,p:78709,tN:Thread-2] Loaded converter: CONVERTER_bed_gff_or_vcf_to_bigwig_0 +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:41,718 [pN:main.1,p:78709,tN:Thread-2] Loaded converter: CONVERTER_uncompressed_to_gz +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:41,718 [pN:main.1,p:78709,tN:Thread-2] Loaded converter: CONVERTER_bcf_uncompressed_to_bcf +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:41,718 [pN:main.1,p:78709,tN:Thread-2] Loaded converter: CONVERTER_bcf_uncompressed_to_bcf +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:41,718 [pN:main.1,p:78709,tN:Thread-2] Loaded converter: CONVERTER_wig_to_bigwig +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:41,718 [pN:main.1,p:78709,tN:Thread-2] Loaded converter: CONVERTER_wiggle_to_interval_0 +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:41,718 [pN:main.1,p:78709,tN:Thread-2] Loaded converter: CONVERTER_vcf_bgzip_to_tabix_0 +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:41,719 [pN:main.1,p:78709,tN:Thread-2] Loaded converter: CONVERTER_gz_to_uncompressed +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:41,719 [pN:main.1,p:78709,tN:Thread-2] Loaded converter: lped2fpedconvert +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:41,719 [pN:main.1,p:78709,tN:Thread-2] Loaded converter: lped2pbedconvert +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:41,719 [pN:main.1,p:78709,tN:Thread-2] Loaded converter: pbed2lpedconvert +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:41,739 [pN:main.1,p:78709,tN:Thread-2] Loaded converter: pbed2ldindepconvert +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:41,739 [pN:main.1,p:78709,tN:Thread-2] Loaded converter: CONVERTER_uncompressed_to_gz +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:41,739 [pN:main.1,p:78709,tN:Thread-2] Loaded converter: CONVERTER_gz_to_uncompressed +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:41,739 [pN:main.1,p:78709,tN:Thread-2] Loaded converter: CONVERTER_biom +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:41,740 [pN:main.1,p:78709,tN:Thread-2] Loaded converter: CONVERTER_biom +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:41,740 [pN:main.1,p:78709,tN:Thread-2] Loaded converter: CONVERTER_molecules +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:41,740 [pN:main.1,p:78709,tN:Thread-2] Loaded converter: CONVERTER_molecules +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:41,740 [pN:main.1,p:78709,tN:Thread-2] Loaded converter: CONVERTER_molecules +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:41,740 [pN:main.1,p:78709,tN:Thread-2] Loaded converter: CONVERTER_SMILES_to_MOL +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:41,740 [pN:main.1,p:78709,tN:Thread-2] Loaded converter: CONVERTER_molecules +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:41,741 [pN:main.1,p:78709,tN:Thread-2] Loaded converter: CONVERTER_smiles_to_smiles +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:41,741 [pN:main.1,p:78709,tN:Thread-2] Loaded converter: CONVERTER_molecules +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:41,741 [pN:main.1,p:78709,tN:Thread-2] Loaded converter: CONVERTER_molecules +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:41,741 [pN:main.1,p:78709,tN:Thread-2] Loaded converter: CONVERTER_molecules +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:41,741 [pN:main.1,p:78709,tN:Thread-2] Loaded converter: CONVERTER_molecules +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:41,742 [pN:main.1,p:78709,tN:Thread-2] Loaded converter: CONVERTER_molecules +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:41,742 [pN:main.1,p:78709,tN:Thread-2] Loaded converter: CONVERTER_molecules +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:41,742 [pN:main.1,p:78709,tN:Thread-2] Loaded converter: CONVERTER_inchi_to_mol +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:41,742 [pN:main.1,p:78709,tN:Thread-2] Loaded converter: CONVERTER_molecules +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:41,742 [pN:main.1,p:78709,tN:Thread-2] Loaded converter: CONVERTER_molecules +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:41,742 [pN:main.1,p:78709,tN:Thread-2] Loaded converter: CONVERTER_molecules +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:41,743 [pN:main.1,p:78709,tN:Thread-2] Loaded converter: CONVERTER_molecules +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:41,743 [pN:main.1,p:78709,tN:Thread-2] Loaded converter: CONVERTER_molecules +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:41,743 [pN:main.1,p:78709,tN:Thread-2] Loaded converter: CONVERTER_molecules +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:41,743 [pN:main.1,p:78709,tN:Thread-2] Loaded converter: CONVERTER_molecules +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:41,743 [pN:main.1,p:78709,tN:Thread-2] Loaded converter: CONVERTER_molecules +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:41,743 [pN:main.1,p:78709,tN:Thread-2] Loaded converter: CONVERTER_molecules +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:41,744 [pN:main.1,p:78709,tN:Thread-2] Loaded converter: CONVERTER_molecules +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:41,744 [pN:main.1,p:78709,tN:Thread-2] Loaded converter: CONVERTER_mol2_to_mol +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:41,744 [pN:main.1,p:78709,tN:Thread-2] Loaded converter: CONVERTER_molecules +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:41,744 [pN:main.1,p:78709,tN:Thread-2] Loaded converter: CONVERTER_cml_to_smiles +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:41,744 [pN:main.1,p:78709,tN:Thread-2] Loaded converter: CONVERTER_molecules +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:41,744 [pN:main.1,p:78709,tN:Thread-2] Loaded converter: CONVERTER_molecules +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:41,745 [pN:main.1,p:78709,tN:Thread-2] Loaded converter: CONVERTER_molecules +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:41,745 [pN:main.1,p:78709,tN:Thread-2] Loaded converter: CONVERTER_Pdb_to_Gro_0 +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:41,745 [pN:main.1,p:78709,tN:Thread-2] Loaded converter: CONVERTER_mdconvert +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:41,745 [pN:main.1,p:78709,tN:Thread-2] Loaded converter: CONVERTER_mdconvert +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:41,745 [pN:main.1,p:78709,tN:Thread-2] Loaded converter: CONVERTER_mdconvert +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:41,745 [pN:main.1,p:78709,tN:Thread-2] Loaded converter: CONVERTER_mdconvert +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:41,746 [pN:main.1,p:78709,tN:Thread-2] Loaded converter: CONVERTER_mdconvert +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:41,746 [pN:main.1,p:78709,tN:Thread-2] Loaded converter: CONVERTER_mdconvert +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:41,746 [pN:main.1,p:78709,tN:Thread-2] Loaded converter: CONVERTER_Gro_to_Pdb_0 +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:41,746 [pN:main.1,p:78709,tN:Thread-2] Loaded converter: CONVERTER_ref_to_seq_taxomony +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:41,746 [pN:main.1,p:78709,tN:Thread-2] Loaded converter: CONVERTER_neostorezip_to_neostore +galaxy.datatypes.registry DEBUG 2024-02-23 14:21:41,751 [pN:main.1,p:78709,tN:Thread-2] Loaded external metadata tool: __SET_METADATA__ +galaxy.tools.special_tools DEBUG 2024-02-23 14:21:41,753 [pN:main.1,p:78709,tN:Thread-2] Loaded history export tool: __EXPORT_HISTORY__ +galaxy.tools.special_tools DEBUG 2024-02-23 14:21:41,755 [pN:main.1,p:78709,tN:Thread-2] Loaded history export to uri tool: __EXPORT_HISTORY_TO_URI__ +galaxy.tools.special_tools DEBUG 2024-02-23 14:21:41,757 [pN:main.1,p:78709,tN:Thread-2] Loaded history import tool: __IMPORT_HISTORY__ +galaxy.tools.special_tools DEBUG 2024-02-23 14:21:41,761 [pN:main.1,p:78709,tN:Thread-2] Loaded data fetch tool: __DATA_FETCH__ +galaxy.queue_worker INFO 2024-02-23 14:21:41,761 [pN:main.1,p:78709,tN:Thread-2] Queuing async task rebuild_toolbox_search_index for main.1. +galaxy.queue_worker DEBUG 2024-02-23 14:21:41,781 [pN:main.1,p:78709,tN:Thread-2] Toolbox reload (193.942 ms) +galaxy.queue_worker INFO 2024-02-23 14:21:41,781 [pN:main.1,p:78709,tN:Thread-2] Queuing async task rebuild_toolbox_search_index for main.1. +galaxy.web_stack INFO 2024-02-23 14:21:41,792 [pN:main.1,p:78709,tN:Thread-2] Galaxy server instance 'main.1' is running +[92m +Serving on http://127.0.0.1:9090 +[0m +galaxy.queue_worker INFO 2024-02-23 14:21:42,781 [pN:main.1,p:78709,tN:Thread-1] Instance 'main.1' received 'rebuild_toolbox_search_index' task, executing now. +galaxy.tools.search DEBUG 2024-02-23 14:21:42,782 [pN:main.1,p:78709,tN:Thread-1] Starting to build toolbox index of panel default. +galaxy.tools.search DEBUG 2024-02-23 14:21:42,791 [pN:main.1,p:78709,tN:Thread-1] Toolbox index of panel default finished (9.312 ms) +galaxy.tools.search DEBUG 2024-02-23 14:21:42,791 [pN:main.1,p:78709,tN:Thread-1] Starting to build toolbox index of panel ontology:edam_operations. +galaxy.tools.search DEBUG 2024-02-23 14:21:42,795 [pN:main.1,p:78709,tN:Thread-1] Toolbox index of panel ontology:edam_operations finished (3.894 ms) +galaxy.tools.search DEBUG 2024-02-23 14:21:42,796 [pN:main.1,p:78709,tN:Thread-1] Starting to build toolbox index of panel ontology:edam_topics. +galaxy.tools.search DEBUG 2024-02-23 14:21:42,799 [pN:main.1,p:78709,tN:Thread-1] Toolbox index of panel ontology:edam_topics finished (3.529 ms) +galaxy.queue_worker INFO 2024-02-23 14:21:42,808 [pN:main.1,p:78709,tN:Thread-1] Instance 'main.1' received 'rebuild_toolbox_search_index' task, executing now. +galaxy.tools.search DEBUG 2024-02-23 14:21:42,808 [pN:main.1,p:78709,tN:Thread-1] Starting to build toolbox index of panel default. +galaxy.tools.search DEBUG 2024-02-23 14:21:42,811 [pN:main.1,p:78709,tN:Thread-1] Toolbox index of panel default finished (3.266 ms) +galaxy.tools.search DEBUG 2024-02-23 14:21:42,811 [pN:main.1,p:78709,tN:Thread-1] Starting to build toolbox index of panel ontology:edam_operations. +galaxy.tools.search DEBUG 2024-02-23 14:21:42,815 [pN:main.1,p:78709,tN:Thread-1] Toolbox index of panel ontology:edam_operations finished (3.321 ms) +galaxy.tools.search DEBUG 2024-02-23 14:21:42,815 [pN:main.1,p:78709,tN:Thread-1] Starting to build toolbox index of panel ontology:edam_topics. +galaxy.tools.search DEBUG 2024-02-23 14:21:42,818 [pN:main.1,p:78709,tN:Thread-1] Toolbox index of panel ontology:edam_topics finished (3.186 ms) +2024-02-23 14:21:45,822 INFO success: gunicorn entered RUNNING state, process has stayed up for > than 15 seconds (startsecs) + +==> /tmp/tmpqrlh6ih1/gravity/log/celery-beat.log <== +[2024-02-23 14:26:34,191: DEBUG/MainProcess] beat: Synchronizing schedule... +[2024-02-23 14:26:34,192: DEBUG/MainProcess] beat: Waking up in 5.00 minutes. + +==> /tmp/tmpqrlh6ih1/gravity/log/gunicorn.log <== +galaxy.webapps.base.webapp DEBUG 2024-02-23 14:29:47,081 [pN:main.1,p:78709,tN:WSGI_0] Received invalid session key '{secure_id}', setting a new session key +/scratch/rico/galaxy/lib/galaxy/managers/users.py:854: SAWarning: Dialect sqlite+pysqlite does *not* support Decimal objects natively, and SQLAlchemy must convert from floating point - rounding errors and other issues may occur. Please consider storing Decimal numbers as strings or integers on this platform for lossless storage. + return session.scalars(stmt).first() +/scratch/rico/galaxy/lib/galaxy/webapps/base/webapp.py:349: SAWarning: Dialect sqlite+pysqlite does *not* support Decimal objects natively, and SQLAlchemy must convert from floating point - rounding errors and other issues may occur. Please consider storing Decimal numbers as strings or integers on this platform for lossless storage. + if config.use_remote_user and self.galaxy_session.user.deleted: +uvicorn.access INFO 2024-02-23 14:29:47,290 [pN:main.1,p:78709,tN:MainThread] 127.0.0.1:51344 - "GET / HTTP/1.1" 200 +uvicorn.access INFO 2024-02-23 14:29:47,318 [pN:main.1,p:78709,tN:MainThread] 127.0.0.1:51344 - "GET /static/dist/base.css?v=1707855697000 HTTP/1.1" 200 +uvicorn.access INFO 2024-02-23 14:29:47,321 [pN:main.1,p:78709,tN:MainThread] 127.0.0.1:51360 - "GET /static/dist/analysis.bundled.js?v=1707855697000 HTTP/1.1" 200 +uvicorn.access INFO 2024-02-23 14:29:47,324 [pN:main.1,p:78709,tN:MainThread] 127.0.0.1:51352 - "GET /static/dist/libs.bundled.js?v=1707855697000 HTTP/1.1" 200 +uvicorn.access INFO 2024-02-23 14:29:48,282 [pN:main.1,p:78709,tN:MainThread] 127.0.0.1:51360 - "GET /api/webhooks HTTP/1.1" 200 +/scratch/rico/galaxy/lib/galaxy/managers/interactivetool.py:249: SAWarning: Coercing Subquery object into a select() for use in IN(); please pass a select() construct explicitly + stmt = select(InteractiveToolEntryPoint).where(InteractiveToolEntryPoint.job_id.in_(build_subquery())) +uvicorn.access INFO 2024-02-23 14:29:48,307 [pN:main.1,p:78709,tN:MainThread] 127.0.0.1:51376 - "GET /api/entry_points?running=true HTTP/1.1" 200 +uvicorn.access INFO 2024-02-23 14:29:48,325 [pN:main.1,p:78709,tN:MainThread] 127.0.0.1:51344 - "GET /api/configuration HTTP/1.1" 200 +uvicorn.access INFO 2024-02-23 14:29:48,341 [pN:main.1,p:78709,tN:MainThread] 127.0.0.1:51352 - "GET /api/users/current HTTP/1.1" 200 +uvicorn.access INFO 2024-02-23 14:29:48,385 [pN:main.1,p:78709,tN:MainThread] 127.0.0.1:51344 - "GET /api/webhooks HTTP/1.1" 200 +uvicorn.access INFO 2024-02-23 14:29:48,392 [pN:main.1,p:78709,tN:MainThread] 127.0.0.1:51352 - "GET /welcome HTTP/1.1" 302 +uvicorn.access INFO 2024-02-23 14:29:48,412 [pN:main.1,p:78709,tN:MainThread] 127.0.0.1:51376 - "GET /api/tool_panels HTTP/1.1" 200 +uvicorn.access INFO 2024-02-23 14:29:48,470 [pN:main.1,p:78709,tN:MainThread] 127.0.0.1:51376 - "GET /static/dist/base.css HTTP/1.1" 200 +uvicorn.access INFO 2024-02-23 14:29:48,474 [pN:main.1,p:78709,tN:MainThread] 127.0.0.1:51384 - "GET /favicon.ico HTTP/1.1" 404 +uvicorn.access INFO 2024-02-23 14:29:48,511 [pN:main.1,p:78709,tN:MainThread] 127.0.0.1:51344 - "GET /api/tools?in_panel=False HTTP/1.1" 200 +uvicorn.access INFO 2024-02-23 14:29:48,538 [pN:main.1,p:78709,tN:MainThread] 127.0.0.1:51352 - "GET /api/histories/count HTTP/1.1" 200 +/scratch/rico/galaxy/lib/galaxy/model/__init__.py:3318: SAWarning: Dialect sqlite+pysqlite does *not* support Decimal objects natively, and SQLAlchemy must convert from floating point - rounding errors and other issues may occur. Please consider storing Decimal numbers as strings or integers on this platform for lossless storage. + return object_session(self).scalar(stmt) or 0 +uvicorn.access INFO 2024-02-23 14:29:48,554 [pN:main.1,p:78709,tN:MainThread] 127.0.0.1:51360 - "GET /history/current_history_json HTTP/1.1" 200 +uvicorn.access INFO 2024-02-23 14:29:48,580 [pN:main.1,p:78709,tN:MainThread] 127.0.0.1:51352 - "GET /history/current_history_json HTTP/1.1" 200 +uvicorn.access INFO 2024-02-23 14:29:48,613 [pN:main.1,p:78709,tN:MainThread] 127.0.0.1:51360 - "GET /api/tool_panels/default HTTP/1.1" 200 +/scratch/rico/galaxy/lib/galaxy/managers/history_contents.py:232: SAWarning: Dialect sqlite+pysqlite does *not* support Decimal objects natively, and SQLAlchemy must convert from floating point - rounding errors and other issues may occur. Please consider storing Decimal numbers as strings or integers on this platform for lossless storage. + contents_results = self._union_of_contents_query(container, **kwargs).all() +uvicorn.access INFO 2024-02-23 14:29:48,687 [pN:main.1,p:78709,tN:MainThread] 127.0.0.1:51352 - "GET /api/histories?view=summary&order=update_time&offset=0&limit=10 HTTP/1.1" 200 +uvicorn.access INFO 2024-02-23 14:29:48,690 [pN:main.1,p:78709,tN:MainThread] 127.0.0.1:51344 - "GET /api/histories/e94ef2b25ec88be9/contents?v=dev&limit=1000&q=update_time-ge&qv=2024-02-23T19:29:47.782Z HTTP/1.1" 200 +uvicorn.access INFO 2024-02-23 14:29:48,740 [pN:main.1,p:78709,tN:MainThread] 127.0.0.1:51376 - "GET /api/datatypes?extension_only=false HTTP/1.1" 200 +uvicorn.access INFO 2024-02-23 14:29:48,800 [pN:main.1,p:78709,tN:MainThread] 127.0.0.1:51352 - "GET /static/dist/libs.bundled.js HTTP/1.1" 200 +uvicorn.access INFO 2024-02-23 14:29:48,871 [pN:main.1,p:78709,tN:MainThread] 127.0.0.1:51384 - "GET /api/genomes HTTP/1.1" 200 +uvicorn.access INFO 2024-02-23 14:29:48,872 [pN:main.1,p:78709,tN:MainThread] 127.0.0.1:51360 - "GET /api/histories/e94ef2b25ec88be9/contents?v=dev&order=hid&offset=0&limit=100&q=deleted&qv=false&q=visible&qv=true HTTP/1.1" 200 +uvicorn.access INFO 2024-02-23 14:29:48,898 [pN:main.1,p:78709,tN:MainThread] 127.0.0.1:51376 - "GET /api/users/e94ef2b25ec88be9 HTTP/1.1" 200 +uvicorn.access INFO 2024-02-23 14:29:48,903 [pN:main.1,p:78709,tN:MainThread] 127.0.0.1:51344 - "GET /api/histories/count HTTP/1.1" 200 +uvicorn.access INFO 2024-02-23 14:29:51,792 [pN:main.1,p:78709,tN:MainThread] 127.0.0.1:51390 - "GET /history/current_history_json?since=2024-02-23T19:29:48.000464 HTTP/1.1" 200 +uvicorn.access INFO 2024-02-23 14:29:54,822 [pN:main.1,p:78709,tN:MainThread] 127.0.0.1:51392 - "GET /history/current_history_json?since=2024-02-23T19:29:48.000464 HTTP/1.1" 200 +uvicorn.access INFO 2024-02-23 14:29:57,851 [pN:main.1,p:78709,tN:MainThread] 127.0.0.1:50962 - "GET /history/current_history_json?since=2024-02-23T19:29:48.000464 HTTP/1.1" 200 +uvicorn.access INFO 2024-02-23 14:29:58,400 [pN:main.1,p:78709,tN:MainThread] 127.0.0.1:50962 - "GET /api/entry_points?running=true HTTP/1.1" 200 +uvicorn.access INFO 2024-02-23 14:30:01,476 [pN:main.1,p:78709,tN:MainThread] 127.0.0.1:50964 - "GET /history/current_history_json?since=2024-02-23T19:29:48.000464 HTTP/1.1" 200 +uvicorn.access INFO 2024-02-23 14:30:04,843 [pN:main.1,p:78709,tN:MainThread] 127.0.0.1:50978 - "GET /history/current_history_json?since=2024-02-23T19:29:48.000464 HTTP/1.1" 200 +uvicorn.access INFO 2024-02-23 14:30:07,873 [pN:main.1,p:78709,tN:MainThread] 127.0.0.1:36628 - "GET /history/current_history_json?since=2024-02-23T19:29:48.000464 HTTP/1.1" 200 +uvicorn.access INFO 2024-02-23 14:30:08,404 [pN:main.1,p:78709,tN:MainThread] 127.0.0.1:36628 - "GET /api/entry_points?running=true HTTP/1.1" 200 +uvicorn.access INFO 2024-02-23 14:30:10,903 [pN:main.1,p:78709,tN:MainThread] 127.0.0.1:36636 - "GET /history/current_history_json?since=2024-02-23T19:29:48.000464 HTTP/1.1" 200 +uvicorn.access INFO 2024-02-23 14:30:13,934 [pN:main.1,p:78709,tN:MainThread] 127.0.0.1:36652 - "GET /history/current_history_json?since=2024-02-23T19:29:48.000464 HTTP/1.1" 200 +uvicorn.access INFO 2024-02-23 14:30:16,966 [pN:main.1,p:78709,tN:MainThread] 127.0.0.1:58278 - "GET /history/current_history_json?since=2024-02-23T19:29:48.000464 HTTP/1.1" 200 +uvicorn.access INFO 2024-02-23 14:30:18,407 [pN:main.1,p:78709,tN:MainThread] 127.0.0.1:58278 - "GET /api/entry_points?running=true HTTP/1.1" 200 +uvicorn.access INFO 2024-02-23 14:30:19,994 [pN:main.1,p:78709,tN:MainThread] 127.0.0.1:58278 - "GET /history/current_history_json?since=2024-02-23T19:29:48.000464 HTTP/1.1" 200 +uvicorn.access INFO 2024-02-23 14:30:23,026 [pN:main.1,p:78709,tN:MainThread] 127.0.0.1:58280 - "GET /history/current_history_json?since=2024-02-23T19:29:48.000464 HTTP/1.1" 200 +uvicorn.access INFO 2024-02-23 14:30:26,058 [pN:main.1,p:78709,tN:MainThread] 127.0.0.1:35382 - "GET /history/current_history_json?since=2024-02-23T19:29:48.000464 HTTP/1.1" 200 +uvicorn.access INFO 2024-02-23 14:30:28,411 [pN:main.1,p:78709,tN:MainThread] 127.0.0.1:35392 - "GET /api/entry_points?running=true HTTP/1.1" 200 +uvicorn.access INFO 2024-02-23 14:30:29,087 [pN:main.1,p:78709,tN:MainThread] 127.0.0.1:35392 - "GET /history/current_history_json?since=2024-02-23T19:29:48.000464 HTTP/1.1" 200 +uvicorn.access INFO 2024-02-23 14:30:32,119 [pN:main.1,p:78709,tN:MainThread] 127.0.0.1:35406 - "GET /history/current_history_json?since=2024-02-23T19:29:48.000464 HTTP/1.1" 200 +uvicorn.access INFO 2024-02-23 14:30:35,147 [pN:main.1,p:78709,tN:MainThread] 127.0.0.1:35418 - "GET /history/current_history_json?since=2024-02-23T19:29:48.000464 HTTP/1.1" 200 +uvicorn.access INFO 2024-02-23 14:30:38,178 [pN:main.1,p:78709,tN:MainThread] 127.0.0.1:50712 - "GET /history/current_history_json?since=2024-02-23T19:29:48.000464 HTTP/1.1" 200 +uvicorn.access INFO 2024-02-23 14:30:38,410 [pN:main.1,p:78709,tN:MainThread] 127.0.0.1:50712 - "GET /api/entry_points?running=true HTTP/1.1" 200 +uvicorn.access INFO 2024-02-23 14:30:41,207 [pN:main.1,p:78709,tN:MainThread] 127.0.0.1:50722 - "GET /history/current_history_json?since=2024-02-23T19:29:48.000464 HTTP/1.1" 200 +uvicorn.access INFO 2024-02-23 14:30:44,239 [pN:main.1,p:78709,tN:MainThread] 127.0.0.1:50732 - "GET /history/current_history_json?since=2024-02-23T19:29:48.000464 HTTP/1.1" 200 +uvicorn.access INFO 2024-02-23 14:30:47,270 [pN:main.1,p:78709,tN:MainThread] 127.0.0.1:46500 - "GET /history/current_history_json?since=2024-02-23T19:29:48.000464 HTTP/1.1" 200 +uvicorn.access INFO 2024-02-23 14:30:48,415 [pN:main.1,p:78709,tN:MainThread] 127.0.0.1:46500 - "GET /api/entry_points?running=true HTTP/1.1" 200 +uvicorn.access INFO 2024-02-23 14:30:50,299 [pN:main.1,p:78709,tN:MainThread] 127.0.0.1:46500 - "GET /history/current_history_json?since=2024-02-23T19:29:48.000464 HTTP/1.1" 200 +uvicorn.access INFO 2024-02-23 14:30:53,329 [pN:main.1,p:78709,tN:MainThread] 127.0.0.1:46514 - "GET /history/current_history_json?since=2024-02-23T19:29:48.000464 HTTP/1.1" 200 +uvicorn.access INFO 2024-02-23 14:30:56,356 [pN:main.1,p:78709,tN:MainThread] 127.0.0.1:49334 - "GET /history/current_history_json?since=2024-02-23T19:29:48.000464 HTTP/1.1" 200 +uvicorn.access INFO 2024-02-23 14:30:57,485 [pN:main.1,p:78709,tN:MainThread] 127.0.0.1:49334 - "POST /api/upload/resumable_upload/ HTTP/1.1" 201 +uvicorn.access INFO 2024-02-23 14:30:57,537 [pN:main.1,p:78709,tN:MainThread] 127.0.0.1:49334 - "PATCH /api/upload/resumable_upload/4d30abe413ab43b280d920f7dea4f47e HTTP/1.1" 204 +galaxy.tools INFO 2024-02-23 14:30:57,574 [pN:main.1,p:78709,tN:MainThread] Validated and populated state for tool request (1.213 ms) +galaxy.tools.actions.upload DEBUG 2024-02-23 14:30:57,582 [pN:main.1,p:78709,tN:MainThread] Persisted uploads (0.058 ms) +galaxy.tools.actions.upload DEBUG 2024-02-23 14:30:57,655 [pN:main.1,p:78709,tN:MainThread] Created upload job (5.150 ms) +galaxy.tools.execute DEBUG 2024-02-23 14:30:57,655 [pN:main.1,p:78709,tN:MainThread] Tool __DATA_FETCH__ created job None (73.168 ms) +galaxy.web_stack.handlers INFO 2024-02-23 14:30:57,676 [pN:main.1,p:78709,tN:MainThread] (Job[id=1,tool_id=__DATA_FETCH__]) Handler '_default_' assigned using 'HANDLER_ASSIGNMENT_METHODS.DB_SKIP_LOCKED' assignment method +galaxy.tools.execute DEBUG 2024-02-23 14:30:57,680 [pN:main.1,p:78709,tN:MainThread] Created 1 job(s) for tool __DATA_FETCH__ request (106.727 ms) +uvicorn.access INFO 2024-02-23 14:30:57,694 [pN:main.1,p:78709,tN:MainThread] 127.0.0.1:49334 - "POST /api/tools/fetch HTTP/1.1" 200 +uvicorn.access INFO 2024-02-23 14:30:58,416 [pN:main.1,p:78709,tN:MainThread] 127.0.0.1:49334 - "GET /api/entry_points?running=true HTTP/1.1" 200 +galaxy.jobs.mapper DEBUG 2024-02-23 14:30:58,477 [pN:main.1,p:78709,tN:JobHandlerQueue.monitor_thread] (1) Mapped job to destination id: docker_local +galaxy.jobs.handler DEBUG 2024-02-23 14:30:58,492 [pN:main.1,p:78709,tN:JobHandlerQueue.monitor_thread] (1) Dispatching to local runner +galaxy.jobs DEBUG 2024-02-23 14:30:58,503 [pN:main.1,p:78709,tN:JobHandlerQueue.monitor_thread] (1) Persisting job destination (destination id: docker_local) +galaxy.jobs DEBUG 2024-02-23 14:30:58,530 [pN:main.1,p:78709,tN:JobHandlerQueue.monitor_thread] (1) Working directory for job is: /tmp/tmpqrlh6ih1/job_working_directory/000/1 +galaxy.jobs.runners DEBUG 2024-02-23 14:30:58,541 [pN:main.1,p:78709,tN:JobHandlerQueue.monitor_thread] Job [1] queued (48.588 ms) +galaxy.jobs.handler INFO 2024-02-23 14:30:58,552 [pN:main.1,p:78709,tN:JobHandlerQueue.monitor_thread] (1) Job dispatched +galaxy.jobs DEBUG 2024-02-23 14:30:58,674 [pN:main.1,p:78709,tN:LocalRunner.work_thread-3] Job wrapper for Job [1] prepared (102.072 ms) +galaxy.tool_util.deps.containers INFO 2024-02-23 14:30:58,675 [pN:main.1,p:78709,tN:LocalRunner.work_thread-3] Checking with container resolver [ExplicitContainerResolver[]] found description [None] +galaxy.tool_util.deps.containers INFO 2024-02-23 14:30:58,675 [pN:main.1,p:78709,tN:LocalRunner.work_thread-3] Checking with container resolver [CachedMulledDockerContainerResolver[namespace=biocontainers]] found description [None] +galaxy.tool_util.deps.containers INFO 2024-02-23 14:30:58,675 [pN:main.1,p:78709,tN:LocalRunner.work_thread-3] Checking with container resolver [CachedMulledDockerContainerResolver[namespace=local]] found description [None] +galaxy.tool_util.deps.containers INFO 2024-02-23 14:30:58,675 [pN:main.1,p:78709,tN:LocalRunner.work_thread-3] Checking with container resolver [MulledDockerContainerResolver[namespace=biocontainers]] found description [None] +galaxy.tool_util.deps.containers INFO 2024-02-23 14:30:58,675 [pN:main.1,p:78709,tN:LocalRunner.work_thread-3] Checking with container resolver [BuildDockerContainerResolver[namespace=local]] found description [None] +galaxy.jobs.command_factory INFO 2024-02-23 14:30:58,706 [pN:main.1,p:78709,tN:LocalRunner.work_thread-3] Built script [/tmp/tmpqrlh6ih1/job_working_directory/000/1/tool_script.sh] for tool command [python '/scratch/rico/galaxy/lib/galaxy/tools/data_fetch.py' --galaxy-root '/scratch/rico/galaxy' --datatypes-registry '/tmp/tmpqrlh6ih1/job_working_directory/000/1/registry.xml' --request-version '1' --request '/tmp/tmpqrlh6ih1/job_working_directory/000/1/configs/tmpnmy96xuh'] +galaxy.jobs.runners DEBUG 2024-02-23 14:30:58,757 [pN:main.1,p:78709,tN:LocalRunner.work_thread-3] (1) command is: mkdir -p working outputs configs +if [ -d _working ]; then + rm -rf working/ outputs/ configs/; cp -R _working working; cp -R _outputs outputs; cp -R _configs configs +else + cp -R working _working; cp -R outputs _outputs; cp -R configs _configs +fi +cd working; /bin/bash /tmp/tmpqrlh6ih1/job_working_directory/000/1/tool_script.sh > '../outputs/tool_stdout' 2> '../outputs/tool_stderr'; return_code=$?; echo $return_code > /tmp/tmpqrlh6ih1/job_working_directory/000/1/galaxy_1.ec; cd '/tmp/tmpqrlh6ih1/job_working_directory/000/1'; +[ "$GALAXY_VIRTUAL_ENV" = "None" ] && GALAXY_VIRTUAL_ENV="$_GALAXY_VIRTUAL_ENV"; _galaxy_setup_environment True; python metadata/set.py; sh -c "exit $return_code" +galaxy.jobs.runners.local DEBUG 2024-02-23 14:30:58,781 [pN:main.1,p:78709,tN:LocalRunner.work_thread-3] (1) executing job script: /tmp/tmpqrlh6ih1/job_working_directory/000/1/galaxy_1.sh +uvicorn.access INFO 2024-02-23 14:30:59,399 [pN:main.1,p:78709,tN:MainThread] 127.0.0.1:49334 - "GET /history/current_history_json?since=2024-02-23T19:29:48.000464 HTTP/1.1" 200 +uvicorn.access INFO 2024-02-23 14:30:59,459 [pN:main.1,p:78709,tN:MainThread] 127.0.0.1:49334 - "GET /api/histories/e94ef2b25ec88be9/contents?v=dev&limit=1000&q=update_time-ge&qv=2024-02-23T19:29:48.589Z HTTP/1.1" 200 +uvicorn.access INFO 2024-02-23 14:30:59,535 [pN:main.1,p:78709,tN:MainThread] 127.0.0.1:49334 - "GET /api/users/e94ef2b25ec88be9 HTTP/1.1" 200 +uvicorn.access INFO 2024-02-23 14:30:59,564 [pN:main.1,p:78709,tN:MainThread] 127.0.0.1:49344 - "GET /api/histories/e94ef2b25ec88be9/contents?v=dev&order=hid&offset=0&limit=100&q=deleted&qv=false&q=visible&qv=true HTTP/1.1" 200 +uvicorn.access INFO 2024-02-23 14:31:02,523 [pN:main.1,p:78709,tN:MainThread] 127.0.0.1:49346 - "GET /history/current_history_json?since=2024-02-23T19:30:58.000828 HTTP/1.1" 200 +galaxy.jobs.runners.util.process_groups DEBUG 2024-02-23 14:31:05,073 [pN:main.1,p:78709,tN:LocalRunner.work_thread-3] check_pg(): No process found in process group 78818 +galaxy.jobs.runners.local DEBUG 2024-02-23 14:31:05,073 [pN:main.1,p:78709,tN:LocalRunner.work_thread-3] execution finished: /tmp/tmpqrlh6ih1/job_working_directory/000/1/galaxy_1.sh +galaxy.jobs DEBUG 2024-02-23 14:31:05,098 [pN:main.1,p:78709,tN:LocalRunner.work_thread-3] finish(): Moved /tmp/tmpqrlh6ih1/job_working_directory/000/1/outputs/dataset_b25039b4-189c-4c5a-9380-009d996fbf23.dat to /tmp/tmpqrlh6ih1/files/b/2/5/dataset_b25039b4-189c-4c5a-9380-009d996fbf23.dat +galaxy.tool_util.provided_metadata DEBUG 2024-02-23 14:31:05,104 [pN:main.1,p:78709,tN:LocalRunner.work_thread-3] unnamed outputs [{'__unnamed_outputs': [{'destination': {'type': 'hdas'}, 'elements': [{'name': 'fcsadaptor_prok_test.fa.gz', 'dbkey': '?', 'ext': 'fasta.gz', 'link_data_only': False, 'sources': [], 'hashes': [], 'info': 'uploaded fasta.gz file', 'state': 'ok', 'filename': '/tmp/tmpqrlh6ih1/job_working_directory/000/1/working/gxupload_0', 'object_id': 1}]}]}] +galaxy.jobs DEBUG 2024-02-23 14:31:05,242 [pN:main.1,p:78709,tN:LocalRunner.work_thread-3] job_wrapper.finish for job 1 executed (150.364 ms) +uvicorn.access INFO 2024-02-23 14:31:05,558 [pN:main.1,p:78709,tN:MainThread] 127.0.0.1:49360 - "GET /history/current_history_json?since=2024-02-23T19:30:58.000828 HTTP/1.1" 200 +uvicorn.access INFO 2024-02-23 14:31:05,603 [pN:main.1,p:78709,tN:MainThread] 127.0.0.1:49360 - "GET /api/histories/e94ef2b25ec88be9/contents?v=dev&limit=1000&q=update_time-ge&qv=2024-02-23T19:30:59.408Z HTTP/1.1" 200 +uvicorn.access INFO 2024-02-23 14:31:05,655 [pN:main.1,p:78709,tN:MainThread] 127.0.0.1:49360 - "GET /api/users/e94ef2b25ec88be9 HTTP/1.1" 200 +uvicorn.access INFO 2024-02-23 14:31:05,682 [pN:main.1,p:78709,tN:MainThread] 127.0.0.1:49370 - "GET /api/histories/e94ef2b25ec88be9/contents?v=dev&order=hid&offset=0&limit=100&q=deleted&qv=false&q=visible&qv=true HTTP/1.1" 200 +uvicorn.access INFO 2024-02-23 14:31:08,420 [pN:main.1,p:78709,tN:MainThread] 127.0.0.1:54894 - "GET /api/entry_points?running=true HTTP/1.1" 200 +uvicorn.access INFO 2024-02-23 14:31:08,654 [pN:main.1,p:78709,tN:MainThread] 127.0.0.1:54894 - "GET /history/current_history_json?since=2024-02-23T19:31:05.000216 HTTP/1.1" 200 +uvicorn.access INFO 2024-02-23 14:31:11,688 [pN:main.1,p:78709,tN:MainThread] 127.0.0.1:54896 - "GET /history/current_history_json?since=2024-02-23T19:31:05.000216 HTTP/1.1" 200 +uvicorn.access INFO 2024-02-23 14:31:14,719 [pN:main.1,p:78709,tN:MainThread] 127.0.0.1:54910 - "GET /history/current_history_json?since=2024-02-23T19:31:05.000216 HTTP/1.1" 200 +uvicorn.access INFO 2024-02-23 14:31:17,748 [pN:main.1,p:78709,tN:MainThread] 127.0.0.1:34476 - "GET /history/current_history_json?since=2024-02-23T19:31:05.000216 HTTP/1.1" 200 +uvicorn.access INFO 2024-02-23 14:31:18,420 [pN:main.1,p:78709,tN:MainThread] 127.0.0.1:34476 - "GET /api/entry_points?running=true HTTP/1.1" 200 +uvicorn.access INFO 2024-02-23 14:31:20,799 [pN:main.1,p:78709,tN:MainThread] 127.0.0.1:34488 - "GET /history/current_history_json?since=2024-02-23T19:31:05.000216 HTTP/1.1" 200 +uvicorn.access INFO 2024-02-23 14:31:23,827 [pN:main.1,p:78709,tN:MainThread] 127.0.0.1:34494 - "GET /history/current_history_json?since=2024-02-23T19:31:05.000216 HTTP/1.1" 200 +uvicorn.access INFO 2024-02-23 14:31:26,858 [pN:main.1,p:78709,tN:MainThread] 127.0.0.1:33276 - "GET /history/current_history_json?since=2024-02-23T19:31:05.000216 HTTP/1.1" 200 +uvicorn.access INFO 2024-02-23 14:31:28,420 [pN:main.1,p:78709,tN:MainThread] 127.0.0.1:33276 - "GET /api/entry_points?running=true HTTP/1.1" 200 +uvicorn.access INFO 2024-02-23 14:31:29,887 [pN:main.1,p:78709,tN:MainThread] 127.0.0.1:33276 - "GET /history/current_history_json?since=2024-02-23T19:31:05.000216 HTTP/1.1" 200 +uvicorn.access INFO 2024-02-23 14:31:32,919 [pN:main.1,p:78709,tN:MainThread] 127.0.0.1:33290 - "GET /history/current_history_json?since=2024-02-23T19:31:05.000216 HTTP/1.1" 200 + +==> /tmp/tmpqrlh6ih1/gravity/log/celery-beat.log <== +[2024-02-23 14:31:34,086: DEBUG/MainProcess] beat: Synchronizing schedule... +[2024-02-23 14:31:34,099: INFO/MainProcess] Scheduler: Sending due task clean-object-store-caches (galaxy.clean_object_store_caches) +[2024-02-23 14:31:34,141: DEBUG/MainProcess] galaxy.clean_object_store_caches sent. id->0cd32a96-9d0e-4f4d-9772-212740dc8b8c +[2024-02-23 14:31:34,142: DEBUG/MainProcess] beat: Waking up in 5.00 minutes. + +==> /tmp/tmpqrlh6ih1/gravity/log/celery.log <== +[2024-02-23 14:31:35,137: INFO/MainProcess] Task galaxy.clean_object_store_caches[0cd32a96-9d0e-4f4d-9772-212740dc8b8c] received +[2024-02-23 14:31:35,137: DEBUG/MainProcess] TaskPool: Apply <function fast_trace_task at 0x7f9f1756ed90> (args:('galaxy.clean_object_store_caches', '0cd32a96-9d0e-4f4d-9772-212740dc8b8c', {'lang': 'py', 'task': 'galaxy.clean_object_store_caches', 'id': '0cd32a96-9d0e-4f4d-9772-212740dc8b8c', 'shadow': None, 'eta': None, 'expires': None, 'group': None, 'group_index': None, 'retries': 0, 'timelimit': [None, None], 'root_id': '0cd32a96-9d0e-4f4d-9772-212740dc8b8c', 'parent_id': None, 'argsrepr': '()', 'kwargsrepr': '{}', 'origin': 'gen78504@laila', 'ignore_result': False, 'properties': {'correlation_id': '0cd32a96-9d0e-4f4d-9772-212740dc8b8c', 'reply_to': 'a834fe8d-fc9c-31a2-9791-be846a6fc4af', 'delivery_mode': 2, 'delivery_info': {'exchange': '', 'routing_key': 'galaxy.internal'}, 'priority': 0, 'body_encoding': 'base64', 'delivery_tag': '00442f4c-cdc1-41fb-b9c9-cf8c0d8ac151'}, 'reply_to': 'a834fe8d-fc9c-31a2-9791-be846a6fc4af', 'correlation_id': '0cd32a96-9d0e-4f4d-9772-212740dc8b8c', 'hostname': 'celery@laila', 'delivery_info': {'exchange': '', 'routing_key': 'galaxy.internal', 'priority': 0, 'redelivered': None},... kwargs:{}) +[2024-02-23 14:31:35,529: DEBUG/MainProcess] python path is: /scratch/rico/.planemo/gx_venv_3/bin, /scratch/rico/galaxy/lib, /usr/lib/python37.zip, /usr/lib/python3.7, /usr/lib/python3.7/lib-dynload, /scratch/rico/.planemo/gx_venv_3/lib/python3.7/site-packages +[2024-02-23 14:31:35,530: DEBUG/MainProcess] Configuration directory is /tmp/tmpqrlh6ih1 +[2024-02-23 14:31:35,530: DEBUG/MainProcess] Data directory is /scratch/rico/galaxy/database +[2024-02-23 14:31:35,530: DEBUG/MainProcess] Managed config directory is /tmp/tmpqrlh6ih1 +[2024-02-23 14:31:35,559: WARNING/MainProcess] Option master_api_key has been deprecated in favor of bootstrap_admin_api_key +[2024-02-23 14:31:35,560: DEBUG/MainProcess] No extra version JSON file detected at /scratch/rico/galaxy/version.json +[2024-02-23 14:31:35,561: WARNING/MainProcess] No corresponding location name exists for location code: . +[2024-02-23 14:31:35,561: INFO/MainProcess] Using global default values for location name and carbon intensity... +[2024-02-23 14:31:35,563: INFO/MainProcess] Install database targeting Galaxy's database configuration. +[2024-02-23 14:31:35,566: DEBUG/main] WeblessApplicationStack initialized +[2024-02-23 14:31:35,570: DEBUG/main] Loading job configuration from /scratch/rico/galaxytools/tools/ncbi_fcs_adaptor/planemo_job_conf.xml +[2024-02-23 14:31:35,570: DEBUG/main] Read job configuration from file: /scratch/rico/galaxytools/tools/ncbi_fcs_adaptor/planemo_job_conf.xml +[2024-02-23 14:31:35,580: INFO/main] JobConfiguration: No job handler assignment method is set, defaulting to 'HANDLER_ASSIGNMENT_METHODS.DB_SKIP_LOCKED', set the `assign_with` attribute on <handlers> to override the default +[2024-02-23 14:31:35,580: INFO/main] Job handler assignment methods set to: db-skip-locked +[2024-02-23 14:31:35,581: DEBUG/main] default set to child with id or tag 'docker_local' +[2024-02-23 14:31:35,581: DEBUG/main] Done loading job configuration +[2024-02-23 14:31:35,770: WARNING/main] No vault configured. We recommend defining the vault_config_file setting in galaxy.yml + +==> /tmp/tmpqrlh6ih1/gravity/log/gunicorn.log <== +uvicorn.access INFO 2024-02-23 14:31:35,947 [pN:main.1,p:78709,tN:MainThread] 127.0.0.1:59038 - "GET /history/current_history_json?since=2024-02-23T19:31:05.000216 HTTP/1.1" 200 + +==> /tmp/tmpqrlh6ih1/gravity/log/celery.log <== +[2024-02-23 14:31:36,006: DEBUG/main] Loading datatypes from /scratch/rico/galaxy/lib/galaxy/config/sample/datatypes_conf.xml.sample +[2024-02-23 14:31:36,007: DEBUG/main] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension source.h. +[2024-02-23 14:31:36,007: DEBUG/main] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension source.c. +[2024-02-23 14:31:36,007: DEBUG/main] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension source.cpp. +[2024-02-23 14:31:36,007: DEBUG/main] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension source.py. +[2024-02-23 14:31:36,007: DEBUG/main] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension source.go. +[2024-02-23 14:31:36,007: DEBUG/main] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension source.rs. +[2024-02-23 14:31:36,008: DEBUG/main] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension source.cs. +[2024-02-23 14:31:36,008: DEBUG/main] Retrieved datatype module galaxy.datatypes.binary:Binary from the datatype registry for extension hep.root. +[2024-02-23 14:31:36,008: DEBUG/main] Retrieved datatype module galaxy.datatypes.binary:JP2 from the datatype registry for extension jp2. +[2024-02-23 14:31:36,008: DEBUG/main] Retrieved datatype module galaxy.datatypes.binary:Ab1 from the datatype registry for extension ab1. +[2024-02-23 14:31:36,009: DEBUG/main] Retrieved datatype module galaxy.datatypes.assembly:Amos from the datatype registry for extension afg. +[2024-02-23 14:31:36,009: DEBUG/main] Retrieved datatype module galaxy.datatypes.goldenpath:GoldenPath from the datatype registry for extension agp. +[2024-02-23 14:31:36,010: DEBUG/main] Retrieved datatype module galaxy.datatypes.anvio:AnvioComposite from the datatype registry for extension anvio_cog_profile. +[2024-02-23 14:31:36,010: DEBUG/main] Retrieved datatype module galaxy.datatypes.anvio:AnvioComposite from the datatype registry for extension anvio_composite. +[2024-02-23 14:31:36,010: DEBUG/main] Retrieved datatype module galaxy.datatypes.data:Data from the datatype registry for extension anvio_classifier. +[2024-02-23 14:31:36,011: DEBUG/main] Retrieved datatype module galaxy.datatypes.anvio:AnvioContigsDB from the datatype registry for extension anvio_contigs_db. +[2024-02-23 14:31:36,011: DEBUG/main] Retrieved datatype module galaxy.datatypes.anvio:AnvioDB from the datatype registry for extension anvio_db. +[2024-02-23 14:31:36,011: DEBUG/main] Retrieved datatype module galaxy.datatypes.anvio:AnvioGenomesDB from the datatype registry for extension anvio_genomes_db. +[2024-02-23 14:31:36,011: DEBUG/main] Retrieved datatype module galaxy.datatypes.anvio:AnvioPanDB from the datatype registry for extension anvio_pan_db. +[2024-02-23 14:31:36,011: DEBUG/main] Retrieved datatype module galaxy.datatypes.anvio:AnvioComposite from the datatype registry for extension anvio_pfam_profile. +[2024-02-23 14:31:36,011: DEBUG/main] Retrieved datatype module galaxy.datatypes.anvio:AnvioProfileDB from the datatype registry for extension anvio_profile_db. +[2024-02-23 14:31:36,011: DEBUG/main] Retrieved datatype module galaxy.datatypes.anvio:AnvioSamplesDB from the datatype registry for extension anvio_samples_db. +[2024-02-23 14:31:36,011: DEBUG/main] Retrieved datatype module galaxy.datatypes.text:Json from the datatype registry for extension anvio_state. +[2024-02-23 14:31:36,011: DEBUG/main] Retrieved datatype module galaxy.datatypes.anvio:AnvioStructureDB from the datatype registry for extension anvio_structure_db. +[2024-02-23 14:31:36,011: DEBUG/main] Retrieved datatype module galaxy.datatypes.tabular:TSV from the datatype registry for extension anvio_variability. +[2024-02-23 14:31:36,011: DEBUG/main] Retrieved datatype module galaxy.datatypes.text:Arff from the datatype registry for extension arff. +[2024-02-23 14:31:36,012: DEBUG/main] Retrieved datatype module galaxy.datatypes.text:Paf from the datatype registry for extension paf. +[2024-02-23 14:31:36,012: DEBUG/main] Retrieved datatype module galaxy.datatypes.text:Gfa1 from the datatype registry for extension gfa1. +[2024-02-23 14:31:36,012: DEBUG/main] Retrieved datatype module galaxy.datatypes.text:Gfa2 from the datatype registry for extension gfa2. +[2024-02-23 14:31:36,012: DEBUG/main] Retrieved datatype module galaxy.datatypes.data:GenericAsn1 from the datatype registry for extension asn1. +[2024-02-23 14:31:36,012: DEBUG/main] Retrieved datatype module galaxy.datatypes.binary:GenericAsn1Binary from the datatype registry for extension asn1-binary. +[2024-02-23 14:31:36,012: DEBUG/main] Retrieved datatype module galaxy.datatypes.sequence:Axt from the datatype registry for extension axt. +[2024-02-23 14:31:36,012: DEBUG/main] Retrieved datatype module galaxy.datatypes.tabular:FeatureLocationIndex from the datatype registry for extension fli. +[2024-02-23 14:31:36,012: DEBUG/main] Retrieved datatype module galaxy.datatypes.binary:Bam from the datatype registry for extension bam. +[2024-02-23 14:31:36,012: DEBUG/main] Retrieved datatype module galaxy.datatypes.binary:Binary from the datatype registry for extension bai. +[2024-02-23 14:31:36,012: DEBUG/main] Retrieved datatype module galaxy.datatypes.binary:BamInputSorted from the datatype registry for extension qname_input_sorted.bam. +[2024-02-23 14:31:36,013: DEBUG/main] Retrieved datatype module galaxy.datatypes.binary:BamQuerynameSorted from the datatype registry for extension qname_sorted.bam. +[2024-02-23 14:31:36,013: DEBUG/main] Retrieved datatype module galaxy.datatypes.binary:BamNative from the datatype registry for extension unsorted.bam. +[2024-02-23 14:31:36,013: DEBUG/main] Retrieved datatype module galaxy.datatypes.binary:ProBam from the datatype registry for extension probam. +[2024-02-23 14:31:36,013: DEBUG/main] Retrieved datatype module galaxy.datatypes.binary:CRAM from the datatype registry for extension cram. +[2024-02-23 14:31:36,013: DEBUG/main] Retrieved datatype module galaxy.datatypes.interval:Bed from the datatype registry for extension bed. +[2024-02-23 14:31:36,013: DEBUG/main] Retrieved datatype module galaxy.datatypes.interval:BedGraph from the datatype registry for extension bedgraph. +[2024-02-23 14:31:36,013: DEBUG/main] Retrieved datatype module galaxy.datatypes.interval:BedStrict from the datatype registry for extension bedstrict. +[2024-02-23 14:31:36,013: DEBUG/main] Retrieved datatype module galaxy.datatypes.interval:Bed6 from the datatype registry for extension bed6. +[2024-02-23 14:31:36,013: DEBUG/main] Retrieved datatype module galaxy.datatypes.interval:Bed12 from the datatype registry for extension bed12. +[2024-02-23 14:31:36,014: DEBUG/main] Retrieved datatype module galaxy.datatypes.interval:ProBed from the datatype registry for extension probed. +[2024-02-23 14:31:36,014: DEBUG/main] Retrieved datatype module galaxy.datatypes.chrominfo:ChromInfo from the datatype registry for extension len. +[2024-02-23 14:31:36,014: DEBUG/main] Retrieved datatype module galaxy.datatypes.binary:DAA from the datatype registry for extension daa. +[2024-02-23 14:31:36,014: DEBUG/main] Retrieved datatype module galaxy.datatypes.binary:RMA6 from the datatype registry for extension rma6. +[2024-02-23 14:31:36,014: DEBUG/main] Retrieved datatype module galaxy.datatypes.binary:DMND from the datatype registry for extension dmnd. +[2024-02-23 14:31:36,014: DEBUG/main] Retrieved datatype module galaxy.datatypes.binary:Parquet from the datatype registry for extension parquet. +[2024-02-23 14:31:36,014: DEBUG/main] Retrieved datatype module galaxy.datatypes.binary:Idat from the datatype registry for extension idat. +[2024-02-23 14:31:36,014: DEBUG/main] Retrieved datatype module galaxy.datatypes.binary:BigBed from the datatype registry for extension bigbed. +[2024-02-23 14:31:36,014: DEBUG/main] Retrieved datatype module galaxy.datatypes.binary:BigWig from the datatype registry for extension bigwig. +[2024-02-23 14:31:36,015: DEBUG/main] Retrieved datatype module galaxy.datatypes.binary:Binary from the datatype registry for extension cxb. +[2024-02-23 14:31:36,015: DEBUG/main] Retrieved datatype module galaxy.datatypes.interval:ChromatinInteractions from the datatype registry for extension chrint. +[2024-02-23 14:31:36,015: DEBUG/main] Retrieved datatype module galaxy.datatypes.tabular:CSV from the datatype registry for extension csv. +[2024-02-23 14:31:36,015: DEBUG/main] Retrieved datatype module galaxy.datatypes.tabular:TSV from the datatype registry for extension tsv. +[2024-02-23 14:31:36,015: DEBUG/main] Retrieved datatype module galaxy.datatypes.tabular:TSV from the datatype registry for extension intermine_tabular. +[2024-02-23 14:31:36,015: DEBUG/main] Retrieved datatype module galaxy.datatypes.interval:CustomTrack from the datatype registry for extension customtrack. +[2024-02-23 14:31:36,016: DEBUG/main] Retrieved datatype module galaxy.datatypes.ngsindex:BowtieColorIndex from the datatype registry for extension bowtie_color_index. +[2024-02-23 14:31:36,016: DEBUG/main] Retrieved datatype module galaxy.datatypes.ngsindex:BowtieBaseIndex from the datatype registry for extension bowtie_base_index. +[2024-02-23 14:31:36,016: DEBUG/main] Retrieved datatype module galaxy.datatypes.sequence:csFasta from the datatype registry for extension csfasta. +[2024-02-23 14:31:36,016: DEBUG/main] Retrieved datatype module galaxy.datatypes.data:Data from the datatype registry for extension data. +[2024-02-23 14:31:36,016: DEBUG/main] Retrieved datatype module galaxy.datatypes.binary:Binary from the datatype registry for extension gz. +[2024-02-23 14:31:36,016: DEBUG/main] Retrieved datatype module galaxy.datatypes.binary:Binary from the datatype registry for extension binary. +[2024-02-23 14:31:36,016: DEBUG/main] Retrieved datatype module galaxy.datatypes.text:Json from the datatype registry for extension d3_hierarchy. +[2024-02-23 14:31:36,016: DEBUG/main] Retrieved datatype module galaxy.datatypes.text:ImgtJson from the datatype registry for extension imgt.json. +[2024-02-23 14:31:36,016: DEBUG/main] Retrieved datatype module galaxy.datatypes.text:GeoJson from the datatype registry for extension geojson. +[2024-02-23 14:31:36,016: DEBUG/main] Retrieved datatype module galaxy.datatypes.text:Json from the datatype registry for extension data_manager_json. +[2024-02-23 14:31:36,016: DEBUG/main] Retrieved datatype module galaxy.datatypes.sequence:DotBracket from the datatype registry for extension dbn. +[2024-02-23 14:31:36,017: DEBUG/main] Retrieved datatype module galaxy.datatypes.tabular:Tabular from the datatype registry for extension fai. +[2024-02-23 14:31:36,017: DEBUG/main] Retrieved datatype module galaxy.datatypes.sequence:Fasta from the datatype registry for extension fasta. +[2024-02-23 14:31:36,017: DEBUG/main] Retrieved datatype module galaxy.datatypes.sequence:Fastg from the datatype registry for extension fastg. +[2024-02-23 14:31:36,017: DEBUG/main] Retrieved datatype module galaxy.datatypes.sequence:Fastq from the datatype registry for extension fastq. +[2024-02-23 14:31:36,017: DEBUG/main] Retrieved datatype module galaxy.datatypes.sequence:FastqSanger from the datatype registry for extension fastqsanger. +[2024-02-23 14:31:36,017: DEBUG/main] Retrieved datatype module galaxy.datatypes.sequence:FastqSolexa from the datatype registry for extension fastqsolexa. +[2024-02-23 14:31:36,018: DEBUG/main] Retrieved datatype module galaxy.datatypes.sequence:FastqCSSanger from the datatype registry for extension fastqcssanger. +[2024-02-23 14:31:36,018: DEBUG/main] Retrieved datatype module galaxy.datatypes.sequence:FastqIllumina from the datatype registry for extension fastqillumina. +[2024-02-23 14:31:36,018: DEBUG/main] Retrieved datatype module galaxy.datatypes.sequence:SequenceSplitLocations from the datatype registry for extension fqtoc. +[2024-02-23 14:31:36,018: DEBUG/main] Retrieved datatype module galaxy.datatypes.tabular:Eland from the datatype registry for extension eland. +[2024-02-23 14:31:36,018: DEBUG/main] Retrieved datatype module galaxy.datatypes.tabular:ElandMulti from the datatype registry for extension elandmulti. +[2024-02-23 14:31:36,018: DEBUG/main] Retrieved datatype module galaxy.datatypes.tracks:GeneTrack from the datatype registry for extension genetrack. +[2024-02-23 14:31:36,019: DEBUG/main] Retrieved datatype module galaxy.datatypes.interval:Gff from the datatype registry for extension gff. +[2024-02-23 14:31:36,019: DEBUG/main] Retrieved datatype module galaxy.datatypes.interval:Gff3 from the datatype registry for extension gff3. +[2024-02-23 14:31:36,019: DEBUG/main] Retrieved datatype module galaxy.datatypes.images:Gif from the datatype registry for extension gif. +[2024-02-23 14:31:36,019: DEBUG/main] Retrieved datatype module galaxy.datatypes.images:Gmaj from the datatype registry for extension gmaj.zip. +[2024-02-23 14:31:36,019: DEBUG/main] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension graph_dot. +[2024-02-23 14:31:36,019: DEBUG/main] Retrieved datatype module galaxy.datatypes.interval:Gtf from the datatype registry for extension gtf. +[2024-02-23 14:31:36,019: DEBUG/main] Retrieved datatype module galaxy.datatypes.binary:Binary from the datatype registry for extension toolshed.gz. +[2024-02-23 14:31:36,019: DEBUG/main] Retrieved datatype module galaxy.datatypes.binary:Binary from the datatype registry for extension hdf4. +[2024-02-23 14:31:36,020: DEBUG/main] Retrieved datatype module galaxy.datatypes.binary:H5 from the datatype registry for extension h5. +[2024-02-23 14:31:36,020: DEBUG/main] Retrieved datatype module galaxy.datatypes.binary:H5 from the datatype registry for extension scool. +[2024-02-23 14:31:36,020: DEBUG/main] Retrieved datatype module galaxy.datatypes.binary:Grib from the datatype registry for extension grib. +[2024-02-23 14:31:36,020: DEBUG/main] Retrieved datatype module galaxy.datatypes.binary:Loom from the datatype registry for extension loom. +[2024-02-23 14:31:36,020: DEBUG/main] Retrieved datatype module galaxy.datatypes.binary:Anndata from the datatype registry for extension h5ad. +[2024-02-23 14:31:36,020: DEBUG/main] Retrieved datatype module galaxy.datatypes.binary:Visium from the datatype registry for extension visium.tar.gz. +[2024-02-23 14:31:36,020: DEBUG/main] Retrieved datatype module galaxy.datatypes.binary:H5 from the datatype registry for extension mz5. +[2024-02-23 14:31:36,020: DEBUG/main] Retrieved datatype module galaxy.datatypes.text:Json from the datatype registry for extension hyphy_results.json. +[2024-02-23 14:31:36,020: DEBUG/main] Retrieved datatype module galaxy.datatypes.text:Json from the datatype registry for extension hivtrace. +[2024-02-23 14:31:36,020: DEBUG/main] Retrieved datatype module galaxy.datatypes.binary:Cool from the datatype registry for extension cool. +[2024-02-23 14:31:36,020: DEBUG/main] Retrieved datatype module galaxy.datatypes.binary:MCool from the datatype registry for extension mcool. +[2024-02-23 14:31:36,021: DEBUG/main] Retrieved datatype module galaxy.datatypes.binary:H5MLM from the datatype registry for extension h5mlm. +[2024-02-23 14:31:36,021: DEBUG/main] Retrieved datatype module galaxy.datatypes.binary:LudwigModel from the datatype registry for extension ludwig_model. +[2024-02-23 14:31:36,021: DEBUG/main] Retrieved datatype module galaxy.datatypes.text:Html from the datatype registry for extension html. +[2024-02-23 14:31:36,021: DEBUG/main] Retrieved datatype module galaxy.datatypes.text:Html from the datatype registry for extension ludwig_report.html. +[2024-02-23 14:31:36,021: DEBUG/main] Retrieved datatype module galaxy.datatypes.interval:Interval from the datatype registry for extension interval. +[2024-02-23 14:31:36,021: DEBUG/main] Retrieved datatype module galaxy.datatypes.binary:Binary from the datatype registry for extension jellyfish. +[2024-02-23 14:31:36,021: DEBUG/main] Retrieved datatype module galaxy.datatypes.binary:Binary from the datatype registry for extension ktab. +[2024-02-23 14:31:36,021: DEBUG/main] Retrieved datatype module galaxy.datatypes.binary:Binary from the datatype registry for extension hist. +[2024-02-23 14:31:36,021: DEBUG/main] Retrieved datatype module galaxy.datatypes.binary:Binary from the datatype registry for extension prof. +[2024-02-23 14:31:36,104: DEBUG/main] Retrieved datatype module galaxy.datatypes.isa:IsaTab from the datatype registry for extension isa-tab. +[2024-02-23 14:31:36,105: DEBUG/main] Retrieved datatype module galaxy.datatypes.isa:IsaJson from the datatype registry for extension isa-json. +[2024-02-23 14:31:36,105: DEBUG/main] Retrieved datatype module galaxy.datatypes.tabular:Tabular from the datatype registry for extension picard_interval_list. +[2024-02-23 14:31:36,105: DEBUG/main] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension gatk_interval. +[2024-02-23 14:31:36,105: DEBUG/main] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension gatk_report. +[2024-02-23 14:31:36,105: DEBUG/main] Retrieved datatype module galaxy.datatypes.tabular:Tabular from the datatype registry for extension gatk_dbsnp. +[2024-02-23 14:31:36,106: DEBUG/main] Retrieved datatype module galaxy.datatypes.tabular:Tabular from the datatype registry for extension gatk_tranche. +[2024-02-23 14:31:36,106: DEBUG/main] Retrieved datatype module galaxy.datatypes.tabular:Tabular from the datatype registry for extension gatk_recal. +[2024-02-23 14:31:36,106: DEBUG/main] Retrieved datatype module galaxy.datatypes.tabular:Tabular from the datatype registry for extension cnn. +[2024-02-23 14:31:36,106: DEBUG/main] Retrieved datatype module galaxy.datatypes.tabular:Tabular from the datatype registry for extension cns. +[2024-02-23 14:31:36,106: DEBUG/main] Retrieved datatype module galaxy.datatypes.tabular:Tabular from the datatype registry for extension cnr. +[2024-02-23 14:31:36,106: DEBUG/main] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension hhr. +[2024-02-23 14:31:36,106: DEBUG/main] Retrieved datatype module galaxy.datatypes.images:Jpg from the datatype registry for extension jpg. +[2024-02-23 14:31:36,106: DEBUG/main] Retrieved datatype module galaxy.datatypes.images:Tiff from the datatype registry for extension tiff. +[2024-02-23 14:31:36,106: DEBUG/main] Retrieved datatype module galaxy.datatypes.images:Tiff from the datatype registry for extension tf2. +[2024-02-23 14:31:36,107: DEBUG/main] Retrieved datatype module galaxy.datatypes.images:Tiff from the datatype registry for extension tf8. +[2024-02-23 14:31:36,107: DEBUG/main] Retrieved datatype module galaxy.datatypes.images:Tiff from the datatype registry for extension btf. +[2024-02-23 14:31:36,107: DEBUG/main] Retrieved datatype module galaxy.datatypes.images:Tiff from the datatype registry for extension tif. +[2024-02-23 14:31:36,107: DEBUG/main] Retrieved datatype module galaxy.datatypes.images:Tiff from the datatype registry for extension svs. +[2024-02-23 14:31:36,107: DEBUG/main] Retrieved datatype module galaxy.datatypes.images:Tiff from the datatype registry for extension scn. +[2024-02-23 14:31:36,107: DEBUG/main] Retrieved datatype module galaxy.datatypes.images:Tiff from the datatype registry for extension bif. +[2024-02-23 14:31:36,107: DEBUG/main] Retrieved datatype module galaxy.datatypes.images:OMETiff from the datatype registry for extension ome.tiff. +[2024-02-23 14:31:36,107: DEBUG/main] Retrieved datatype module galaxy.datatypes.images:Hamamatsu from the datatype registry for extension vms. +[2024-02-23 14:31:36,107: DEBUG/main] Retrieved datatype module galaxy.datatypes.images:Hamamatsu from the datatype registry for extension vmu. +[2024-02-23 14:31:36,107: DEBUG/main] Retrieved datatype module galaxy.datatypes.images:Hamamatsu from the datatype registry for extension ndpi. +[2024-02-23 14:31:36,107: DEBUG/main] Retrieved datatype module galaxy.datatypes.images:Mirax from the datatype registry for extension mrxs. +[2024-02-23 14:31:36,108: DEBUG/main] Retrieved datatype module galaxy.datatypes.images:Sakura from the datatype registry for extension svslide. +[2024-02-23 14:31:36,108: DEBUG/main] Retrieved datatype module galaxy.datatypes.images:Bmp from the datatype registry for extension bmp. +[2024-02-23 14:31:36,108: DEBUG/main] Retrieved datatype module galaxy.datatypes.images:Im from the datatype registry for extension im. +[2024-02-23 14:31:36,108: DEBUG/main] Retrieved datatype module galaxy.datatypes.images:Pcd from the datatype registry for extension pcd. +[2024-02-23 14:31:36,108: DEBUG/main] Retrieved datatype module galaxy.datatypes.images:Pcx from the datatype registry for extension pcx. +[2024-02-23 14:31:36,108: DEBUG/main] Retrieved datatype module galaxy.datatypes.images:Ppm from the datatype registry for extension ppm. +[2024-02-23 14:31:36,108: DEBUG/main] Retrieved datatype module galaxy.datatypes.images:Psd from the datatype registry for extension psd. +[2024-02-23 14:31:36,108: DEBUG/main] Retrieved datatype module galaxy.datatypes.images:Xbm from the datatype registry for extension xbm. +[2024-02-23 14:31:36,108: DEBUG/main] Retrieved datatype module galaxy.datatypes.images:Xpm from the datatype registry for extension xpm. +[2024-02-23 14:31:36,108: DEBUG/main] Retrieved datatype module galaxy.datatypes.images:Rgb from the datatype registry for extension rgb. +[2024-02-23 14:31:36,108: DEBUG/main] Retrieved datatype module galaxy.datatypes.images:Pbm from the datatype registry for extension pbm. +[2024-02-23 14:31:36,108: DEBUG/main] Retrieved datatype module galaxy.datatypes.images:Pgm from the datatype registry for extension pgm. +[2024-02-23 14:31:36,108: DEBUG/main] Retrieved datatype module galaxy.datatypes.images:Nrrd from the datatype registry for extension nrrd. +[2024-02-23 14:31:36,108: DEBUG/main] Retrieved datatype module galaxy.datatypes.images:Nrrd from the datatype registry for extension nhdr. +[2024-02-23 14:31:36,109: DEBUG/main] Retrieved datatype module galaxy.datatypes.sequence:RNADotPlotMatrix from the datatype registry for extension rna_eps. +[2024-02-23 14:31:36,110: DEBUG/main] Retrieved datatype module galaxy.datatypes.qiime2:QIIME2Artifact from the datatype registry for extension qza. +[2024-02-23 14:31:36,110: DEBUG/main] Retrieved datatype module galaxy.datatypes.qiime2:QIIME2Visualization from the datatype registry for extension qzv. +[2024-02-23 14:31:36,110: DEBUG/main] Retrieved datatype module galaxy.datatypes.qiime2:QIIME2Metadata from the datatype registry for extension qiime2.tabular. +[2024-02-23 14:31:36,110: DEBUG/main] Retrieved datatype module galaxy.datatypes.binary:CompressedZipArchive from the datatype registry for extension zip. +[2024-02-23 14:31:36,110: DEBUG/main] Retrieved datatype module galaxy.datatypes.binary:CompressedZipArchive from the datatype registry for extension ncbi_genome_dataset.zip. +[2024-02-23 14:31:36,110: DEBUG/main] Retrieved datatype module galaxy.datatypes.binary:CompressedArchive from the datatype registry for extension tar. +[2024-02-23 14:31:36,110: DEBUG/main] Retrieved datatype module galaxy.datatypes.data:Directory from the datatype registry for extension directory. +[2024-02-23 14:31:36,110: DEBUG/main] Retrieved datatype module galaxy.datatypes.text:Yaml from the datatype registry for extension yaml. +[2024-02-23 14:31:36,110: DEBUG/main] Retrieved datatype module galaxy.datatypes.tabular:Tabular from the datatype registry for extension mrm. +[2024-02-23 14:31:36,113: DEBUG/main] Retrieved datatype module galaxy.datatypes.proteomics:Dta from the datatype registry for extension dta. +[2024-02-23 14:31:36,113: DEBUG/main] Retrieved datatype module galaxy.datatypes.proteomics:Dta2d from the datatype registry for extension dta2d. +[2024-02-23 14:31:36,113: DEBUG/main] Retrieved datatype module galaxy.datatypes.proteomics:Edta from the datatype registry for extension edta. +[2024-02-23 14:31:36,113: DEBUG/main] Retrieved datatype module galaxy.datatypes.proteomics:PepXml from the datatype registry for extension pepxml. +[2024-02-23 14:31:36,113: DEBUG/main] Retrieved datatype module galaxy.datatypes.proteomics:PepXml from the datatype registry for extension raw_pepxml. +[2024-02-23 14:31:36,113: DEBUG/main] Retrieved datatype module galaxy.datatypes.proteomics:PepXml from the datatype registry for extension peptideprophet_pepxml. +[2024-02-23 14:31:36,113: DEBUG/main] Retrieved datatype module galaxy.datatypes.proteomics:PepXml from the datatype registry for extension interprophet_pepxml. +[2024-02-23 14:31:36,113: DEBUG/main] Retrieved datatype module galaxy.datatypes.proteomics:ProtXML from the datatype registry for extension protxml. +[2024-02-23 14:31:36,113: DEBUG/main] Retrieved datatype module galaxy.datatypes.proteomics:ParamXml from the datatype registry for extension paramxml. +[2024-02-23 14:31:36,114: DEBUG/main] Retrieved datatype module galaxy.datatypes.proteomics:Kroenik from the datatype registry for extension kroenik. +[2024-02-23 14:31:36,114: DEBUG/main] Retrieved datatype module galaxy.datatypes.proteomics:PepList from the datatype registry for extension peplist. +[2024-02-23 14:31:36,114: DEBUG/main] Retrieved datatype module galaxy.datatypes.proteomics:PSMS from the datatype registry for extension psms. +[2024-02-23 14:31:36,114: DEBUG/main] Retrieved datatype module galaxy.datatypes.proteomics:PepXmlReport from the datatype registry for extension pepxml.tsv. +[2024-02-23 14:31:36,114: DEBUG/main] Retrieved datatype module galaxy.datatypes.proteomics:ProtXmlReport from the datatype registry for extension protxml.tsv. +[2024-02-23 14:31:36,114: DEBUG/main] Retrieved datatype module galaxy.datatypes.proteomics:MascotDat from the datatype registry for extension mascotdat. +[2024-02-23 14:31:36,114: DEBUG/main] Retrieved datatype module galaxy.datatypes.proteomics:MzIdentML from the datatype registry for extension mzid. +[2024-02-23 14:31:36,114: DEBUG/main] Retrieved datatype module galaxy.datatypes.proteomics:IdXML from the datatype registry for extension idxml. +[2024-02-23 14:31:36,114: DEBUG/main] Retrieved datatype module galaxy.datatypes.proteomics:TandemXML from the datatype registry for extension tandem. +[2024-02-23 14:31:36,114: DEBUG/main] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension sirius.ms. +[2024-02-23 14:31:36,114: DEBUG/main] Retrieved datatype module galaxy.datatypes.proteomics:ThermoRAW from the datatype registry for extension thermo.raw. +[2024-02-23 14:31:36,114: DEBUG/main] Retrieved datatype module galaxy.datatypes.binary:BafTar from the datatype registry for extension brukerbaf.d.tar. +[2024-02-23 14:31:36,114: DEBUG/main] Retrieved datatype module galaxy.datatypes.binary:YepTar from the datatype registry for extension agilentbrukeryep.d.tar. +[2024-02-23 14:31:36,115: DEBUG/main] Retrieved datatype module galaxy.datatypes.binary:TdfTar from the datatype registry for extension brukertdf.d.tar. +[2024-02-23 14:31:36,115: DEBUG/main] Retrieved datatype module galaxy.datatypes.binary:MassHunterTar from the datatype registry for extension agilentmasshunter.d.tar. +[2024-02-23 14:31:36,115: DEBUG/main] Retrieved datatype module galaxy.datatypes.binary:MassLynxTar from the datatype registry for extension watersmasslynx.raw.tar. +[2024-02-23 14:31:36,115: DEBUG/main] Retrieved datatype module galaxy.datatypes.binary:WiffTar from the datatype registry for extension wiff.tar. +[2024-02-23 14:31:36,115: DEBUG/main] Retrieved datatype module galaxy.datatypes.binary:Wiff2Tar from the datatype registry for extension wiff2.tar. +[2024-02-23 14:31:36,115: DEBUG/main] Retrieved datatype module galaxy.datatypes.proteomics:MascotXML from the datatype registry for extension mascotxml. +[2024-02-23 14:31:36,115: DEBUG/main] Retrieved datatype module galaxy.datatypes.proteomics:MzTab from the datatype registry for extension mztab. +[2024-02-23 14:31:36,115: DEBUG/main] Retrieved datatype module galaxy.datatypes.proteomics:MzTab2 from the datatype registry for extension mztab2. +[2024-02-23 14:31:36,115: DEBUG/main] Retrieved datatype module galaxy.datatypes.proteomics:MzML from the datatype registry for extension mzml. +[2024-02-23 14:31:36,115: DEBUG/main] Retrieved datatype module galaxy.datatypes.proteomics:NmrML from the datatype registry for extension nmrml. +[2024-02-23 14:31:36,115: DEBUG/main] Retrieved datatype module galaxy.datatypes.binary:Meryldb from the datatype registry for extension meryldb. +[2024-02-23 14:31:36,116: DEBUG/main] Retrieved datatype module galaxy.datatypes.binary:Bref3 from the datatype registry for extension bref3. +[2024-02-23 14:31:36,116: DEBUG/main] Retrieved datatype module galaxy.datatypes.proteomics:Mgf from the datatype registry for extension mgf. +[2024-02-23 14:31:36,116: DEBUG/main] Retrieved datatype module galaxy.datatypes.proteomics:Wiff from the datatype registry for extension wiff. +[2024-02-23 14:31:36,116: DEBUG/main] Retrieved datatype module galaxy.datatypes.proteomics:Wiff2 from the datatype registry for extension wiff2. +[2024-02-23 14:31:36,116: DEBUG/main] Retrieved datatype module galaxy.datatypes.proteomics:MzXML from the datatype registry for extension mzxml. +[2024-02-23 14:31:36,116: DEBUG/main] Retrieved datatype module galaxy.datatypes.proteomics:MzData from the datatype registry for extension mzdata. +[2024-02-23 14:31:36,116: DEBUG/main] Retrieved datatype module galaxy.datatypes.proteomics:Ms2 from the datatype registry for extension ms2. +[2024-02-23 14:31:36,116: DEBUG/main] Retrieved datatype module galaxy.datatypes.proteomics:MzQuantML from the datatype registry for extension mzq. +[2024-02-23 14:31:36,116: DEBUG/main] Retrieved datatype module galaxy.datatypes.binary:SQlite from the datatype registry for extension sqlite. +[2024-02-23 14:31:36,116: DEBUG/main] Retrieved datatype module galaxy.datatypes.binary:MzSQlite from the datatype registry for extension mz.sqlite. +[2024-02-23 14:31:36,116: DEBUG/main] Retrieved datatype module galaxy.datatypes.binary:OSW from the datatype registry for extension osw. +[2024-02-23 14:31:36,116: DEBUG/main] Retrieved datatype module galaxy.datatypes.binary:PQP from the datatype registry for extension pqp. +[2024-02-23 14:31:36,116: DEBUG/main] Retrieved datatype module galaxy.datatypes.proteomics:TraML from the datatype registry for extension traml. +[2024-02-23 14:31:36,117: DEBUG/main] Retrieved datatype module galaxy.datatypes.proteomics:TrafoXML from the datatype registry for extension trafoxml. +[2024-02-23 14:31:36,117: DEBUG/main] Retrieved datatype module galaxy.datatypes.proteomics:FeatureXML from the datatype registry for extension featurexml. +[2024-02-23 14:31:36,117: DEBUG/main] Retrieved datatype module galaxy.datatypes.proteomics:ConsensusXML from the datatype registry for extension consensusxml. +[2024-02-23 14:31:36,117: DEBUG/main] Retrieved datatype module galaxy.datatypes.proteomics:UniProtXML from the datatype registry for extension uniprotxml. +[2024-02-23 14:31:36,117: DEBUG/main] Retrieved datatype module galaxy.datatypes.proteomics:XquestXML from the datatype registry for extension xquest.xml. +[2024-02-23 14:31:36,117: DEBUG/main] Retrieved datatype module galaxy.datatypes.proteomics:XquestSpecXML from the datatype registry for extension spec.xml. +[2024-02-23 14:31:36,117: DEBUG/main] Retrieved datatype module galaxy.datatypes.proteomics:QCML from the datatype registry for extension qcml. +[2024-02-23 14:31:36,117: DEBUG/main] Retrieved datatype module galaxy.datatypes.text:Json from the datatype registry for extension mzqc. +[2024-02-23 14:31:36,117: DEBUG/main] Retrieved datatype module galaxy.datatypes.proteomics:Msp from the datatype registry for extension msp. +[2024-02-23 14:31:36,117: DEBUG/main] Retrieved datatype module galaxy.datatypes.proteomics:SPLibNoIndex from the datatype registry for extension splib_noindex. +[2024-02-23 14:31:36,117: DEBUG/main] Retrieved datatype module galaxy.datatypes.proteomics:SPLib from the datatype registry for extension splib. +[2024-02-23 14:31:36,117: DEBUG/main] Retrieved datatype module galaxy.datatypes.binary:BlibSQlite from the datatype registry for extension blib. +[2024-02-23 14:31:36,117: DEBUG/main] Retrieved datatype module galaxy.datatypes.binary:DlibSQlite from the datatype registry for extension dlib. +[2024-02-23 14:31:36,118: DEBUG/main] Retrieved datatype module galaxy.datatypes.binary:ElibSQlite from the datatype registry for extension elib. +[2024-02-23 14:31:36,118: DEBUG/main] Retrieved datatype module galaxy.datatypes.proteomics:XHunterAslFormat from the datatype registry for extension hlf. +[2024-02-23 14:31:36,118: DEBUG/main] Retrieved datatype module galaxy.datatypes.binary:IdpDB from the datatype registry for extension idpdb. +[2024-02-23 14:31:36,118: DEBUG/main] Retrieved datatype module galaxy.datatypes.proteomics:Sf3 from the datatype registry for extension sf3. +[2024-02-23 14:31:36,118: DEBUG/main] Retrieved datatype module galaxy.datatypes.binary:Binary from the datatype registry for extension cps. +[2024-02-23 14:31:36,118: DEBUG/main] Retrieved datatype module galaxy.datatypes.tabular:ConnectivityTable from the datatype registry for extension ct. +[2024-02-23 14:31:36,118: DEBUG/main] Retrieved datatype module galaxy.datatypes.binary:PostgresqlArchive from the datatype registry for extension postgresql. +[2024-02-23 14:31:36,118: DEBUG/main] Retrieved datatype module galaxy.datatypes.binary:MongoDBArchive from the datatype registry for extension mongodb. +[2024-02-23 14:31:36,118: DEBUG/main] Retrieved datatype module galaxy.datatypes.binary:GeneNoteBook from the datatype registry for extension genenotebook. +[2024-02-23 14:31:36,118: DEBUG/main] Retrieved datatype module galaxy.datatypes.binary:SearchGuiArchive from the datatype registry for extension searchgui_archive. +[2024-02-23 14:31:36,118: DEBUG/main] Retrieved datatype module galaxy.datatypes.binary:Fast5Archive from the datatype registry for extension fast5.tar. +[2024-02-23 14:31:36,118: DEBUG/main] Retrieved datatype module galaxy.datatypes.binary:Fast5ArchiveGz from the datatype registry for extension fast5.tar.gz. +[2024-02-23 14:31:36,118: DEBUG/main] Retrieved datatype module galaxy.datatypes.binary:Fast5ArchiveBz2 from the datatype registry for extension fast5.tar.bz2. +[2024-02-23 14:31:36,119: DEBUG/main] Retrieved datatype module galaxy.datatypes.binary:CompressedArchive from the datatype registry for extension peptideshaker_archive. +[2024-02-23 14:31:36,119: DEBUG/main] Retrieved datatype module galaxy.datatypes.tabular:Tabular from the datatype registry for extension percin. +[2024-02-23 14:31:36,119: DEBUG/main] Retrieved datatype module galaxy.datatypes.xml:GenericXml from the datatype registry for extension percout. +[2024-02-23 14:31:36,119: DEBUG/main] Retrieved datatype module galaxy.datatypes.tabular:Tabular from the datatype registry for extension hardklor. +[2024-02-23 14:31:36,119: DEBUG/main] Retrieved datatype module galaxy.datatypes.tabular:Tabular from the datatype registry for extension kronik. +[2024-02-23 14:31:36,119: DEBUG/main] Retrieved datatype module galaxy.datatypes.proteomics:ImzML from the datatype registry for extension imzml. +[2024-02-23 14:31:36,119: DEBUG/main] Retrieved datatype module galaxy.datatypes.images:Analyze75 from the datatype registry for extension analyze75. +[2024-02-23 14:31:36,119: DEBUG/main] Retrieved datatype module galaxy.datatypes.images:Nifti1 from the datatype registry for extension nii1. +[2024-02-23 14:31:36,120: DEBUG/main] Retrieved datatype module galaxy.datatypes.images:Nifti2 from the datatype registry for extension nii2. +[2024-02-23 14:31:36,120: DEBUG/main] Retrieved datatype module galaxy.datatypes.images:Gifti from the datatype registry for extension gii. +[2024-02-23 14:31:36,120: DEBUG/main] Retrieved datatype module galaxy.datatypes.images:Tck from the datatype registry for extension tck. +[2024-02-23 14:31:36,120: DEBUG/main] Retrieved datatype module galaxy.datatypes.images:Trk from the datatype registry for extension trk. +[2024-02-23 14:31:36,120: DEBUG/main] Retrieved datatype module galaxy.datatypes.images:Mrc2014 from the datatype registry for extension mrc. +[2024-02-23 14:31:36,120: DEBUG/main] Retrieved datatype module galaxy.datatypes.images:Star from the datatype registry for extension star. +[2024-02-23 14:31:36,120: DEBUG/main] Retrieved datatype module galaxy.datatypes.proteomics:PEFF from the datatype registry for extension peff. +[2024-02-23 14:31:36,120: DEBUG/main] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension toml. +[2024-02-23 14:31:36,121: DEBUG/main] Retrieved datatype module galaxy.datatypes.flow:FCS from the datatype registry for extension fcs. +[2024-02-23 14:31:36,121: DEBUG/main] Retrieved datatype module galaxy.datatypes.tabular:Tabular from the datatype registry for extension flowtext. +[2024-02-23 14:31:36,121: DEBUG/main] Retrieved datatype module galaxy.datatypes.tabular:Tabular from the datatype registry for extension flowclr. +[2024-02-23 14:31:36,122: DEBUG/main] Retrieved datatype module galaxy.datatypes.tabular:Tabular from the datatype registry for extension flowmfi. +[2024-02-23 14:31:36,122: DEBUG/main] Retrieved datatype module galaxy.datatypes.tabular:Tabular from the datatype registry for extension flowstat1. +[2024-02-23 14:31:36,122: DEBUG/main] Retrieved datatype module galaxy.datatypes.tabular:Tabular from the datatype registry for extension flowstat2. +[2024-02-23 14:31:36,123: DEBUG/main] Retrieved datatype module galaxy.datatypes.tabular:Tabular from the datatype registry for extension flowstat3. +[2024-02-23 14:31:36,123: DEBUG/main] Retrieved datatype module galaxy.datatypes.tabular:Tabular from the datatype registry for extension flowscore. +[2024-02-23 14:31:36,123: DEBUG/main] Retrieved datatype module galaxy.datatypes.binary:RData from the datatype registry for extension flowframe. +[2024-02-23 14:31:36,123: DEBUG/main] Retrieved datatype module galaxy.datatypes.binary:RData from the datatype registry for extension fsom. +[2024-02-23 14:31:36,123: DEBUG/main] Retrieved datatype module galaxy.datatypes.binary:RData from the datatype registry for extension flowset. +[2024-02-23 14:31:36,123: DEBUG/main] Retrieved datatype module galaxy.datatypes.tabular:Tabular from the datatype registry for extension metacyto_clr.txt. +[2024-02-23 14:31:36,124: DEBUG/main] Retrieved datatype module galaxy.datatypes.metacyto:mSummary from the datatype registry for extension metacyto_summary.txt. +[2024-02-23 14:31:36,124: DEBUG/main] Retrieved datatype module galaxy.datatypes.metacyto:mStats from the datatype registry for extension metacyto_stats.txt. +[2024-02-23 14:31:36,124: DEBUG/main] Retrieved datatype module galaxy.datatypes.binary:CompressedArchive from the datatype registry for extension deeptools_compute_matrix_archive. +[2024-02-23 14:31:36,124: DEBUG/main] Retrieved datatype module galaxy.datatypes.binary:CompressedArchive from the datatype registry for extension deeptools_coverage_matrix. +[2024-02-23 14:31:36,124: DEBUG/main] Retrieved datatype module galaxy.datatypes.binary:NetCDF from the datatype registry for extension netcdf. +[2024-02-23 14:31:36,124: DEBUG/main] Retrieved datatype module galaxy.datatypes.images:Eps from the datatype registry for extension eps. +[2024-02-23 14:31:36,124: DEBUG/main] Retrieved datatype module galaxy.datatypes.images:Rast from the datatype registry for extension rast. +[2024-02-23 14:31:36,124: DEBUG/main] Retrieved datatype module galaxy.datatypes.images:Laj from the datatype registry for extension laj. +[2024-02-23 14:31:36,124: DEBUG/main] Retrieved datatype module galaxy.datatypes.sequence:Lav from the datatype registry for extension lav. +[2024-02-23 14:31:36,124: DEBUG/main] Retrieved datatype module galaxy.datatypes.sequence:Maf from the datatype registry for extension maf. +[2024-02-23 14:31:36,125: DEBUG/main] Retrieved datatype module galaxy.datatypes.sequence:MafCustomTrack from the datatype registry for extension mafcustomtrack. +[2024-02-23 14:31:36,125: DEBUG/main] Retrieved datatype module galaxy.datatypes.tabular:MatrixMarket from the datatype registry for extension mtx. +[2024-02-23 14:31:36,125: DEBUG/main] Retrieved datatype module galaxy.datatypes.tabular:CMAP from the datatype registry for extension cmap. +[2024-02-23 14:31:36,125: DEBUG/main] Retrieved datatype module galaxy.datatypes.interval:ENCODEPeak from the datatype registry for extension encodepeak. +[2024-02-23 14:31:36,125: DEBUG/main] Retrieved datatype module galaxy.datatypes.images:Pdf from the datatype registry for extension pdf. +[2024-02-23 14:31:36,125: DEBUG/main] Retrieved datatype module galaxy.datatypes.tabular:Pileup from the datatype registry for extension pileup. +[2024-02-23 14:31:36,125: DEBUG/main] Retrieved datatype module galaxy.datatypes.tabular:Psl from the datatype registry for extension psl. +[2024-02-23 14:31:36,125: DEBUG/main] Retrieved datatype module galaxy.datatypes.text:Obo from the datatype registry for extension obo. +[2024-02-23 14:31:36,125: DEBUG/main] Retrieved datatype module galaxy.datatypes.xml:Owl from the datatype registry for extension owl. +[2024-02-23 14:31:36,125: DEBUG/main] Retrieved datatype module galaxy.datatypes.images:Png from the datatype registry for extension png. +[2024-02-23 14:31:36,125: DEBUG/main] Retrieved datatype module galaxy.datatypes.qualityscore:QualityScore from the datatype registry for extension qual. +[2024-02-23 14:31:36,125: DEBUG/main] Retrieved datatype module galaxy.datatypes.qualityscore:QualityScoreSolexa from the datatype registry for extension qualsolexa. +[2024-02-23 14:31:36,126: DEBUG/main] Retrieved datatype module galaxy.datatypes.qualityscore:QualityScoreIllumina from the datatype registry for extension qualillumina. +[2024-02-23 14:31:36,126: DEBUG/main] Retrieved datatype module galaxy.datatypes.qualityscore:QualityScoreSOLiD from the datatype registry for extension qualsolid. +[2024-02-23 14:31:36,126: DEBUG/main] Retrieved datatype module galaxy.datatypes.qualityscore:QualityScore454 from the datatype registry for extension qual454. +[2024-02-23 14:31:36,126: DEBUG/main] Retrieved datatype module galaxy.datatypes.assembly:Roadmaps from the datatype registry for extension roadmaps. +[2024-02-23 14:31:36,126: DEBUG/main] Retrieved datatype module galaxy.datatypes.tabular:Sam from the datatype registry for extension sam. +[2024-02-23 14:31:36,126: DEBUG/main] Retrieved datatype module galaxy.datatypes.binary:Scf from the datatype registry for extension scf. +[2024-02-23 14:31:36,126: DEBUG/main] Retrieved datatype module galaxy.datatypes.assembly:Sequences from the datatype registry for extension sequences. +[2024-02-23 14:31:36,126: DEBUG/main] Retrieved datatype module galaxy.datatypes.text:SnpEffDb from the datatype registry for extension snpeffdb. +[2024-02-23 14:31:36,126: DEBUG/main] Retrieved datatype module galaxy.datatypes.text:SnpSiftDbNSFP from the datatype registry for extension snpsiftdbnsfp. +[2024-02-23 14:31:36,126: DEBUG/main] Retrieved datatype module galaxy.datatypes.tabular:Tabular from the datatype registry for extension dbnsfp.tabular. +[2024-02-23 14:31:36,126: DEBUG/main] Retrieved datatype module galaxy.datatypes.binary:Sff from the datatype registry for extension sff. +[2024-02-23 14:31:36,127: DEBUG/main] Retrieved datatype module galaxy.datatypes.binary:Sra from the datatype registry for extension sra. +[2024-02-23 14:31:36,127: DEBUG/main] Retrieved datatype module galaxy.datatypes.tabular:SraManifest from the datatype registry for extension sra_manifest.tabular. +[2024-02-23 14:31:36,127: DEBUG/main] Retrieved datatype module galaxy.datatypes.xml:GenericXml from the datatype registry for extension svg. +[2024-02-23 14:31:36,127: DEBUG/main] Retrieved datatype module galaxy.datatypes.tabular:Taxonomy from the datatype registry for extension taxonomy. +[2024-02-23 14:31:36,127: DEBUG/main] Retrieved datatype module galaxy.datatypes.tabular:Tabular from the datatype registry for extension tabular. +[2024-02-23 14:31:36,127: DEBUG/main] Retrieved datatype module galaxy.datatypes.binary:TwoBit from the datatype registry for extension twobit. +[2024-02-23 14:31:36,127: DEBUG/main] Retrieved datatype module galaxy.datatypes.binary:SQmass from the datatype registry for extension sqmass. +[2024-02-23 14:31:36,127: DEBUG/main] Retrieved datatype module galaxy.datatypes.binary:GeminiSQLite from the datatype registry for extension gemini.sqlite. +[2024-02-23 14:31:36,127: DEBUG/main] Retrieved datatype module galaxy.datatypes.binary:ChiraSQLite from the datatype registry for extension chira.sqlite. +[2024-02-23 14:31:36,127: DEBUG/main] Retrieved datatype module galaxy.datatypes.binary:CuffDiffSQlite from the datatype registry for extension cuffdiff.sqlite. +[2024-02-23 14:31:36,128: DEBUG/main] Retrieved datatype module galaxy.datatypes.binary:GAFASQLite from the datatype registry for extension gafa.sqlite. +[2024-02-23 14:31:36,128: DEBUG/main] Retrieved datatype module galaxy.datatypes.binary:NcbiTaxonomySQlite from the datatype registry for extension ncbitaxonomy.sqlite. +[2024-02-23 14:31:36,128: DEBUG/main] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension txt. +[2024-02-23 14:31:36,128: DEBUG/main] Retrieved datatype module galaxy.datatypes.data:LineCount from the datatype registry for extension linecount. +[2024-02-23 14:31:36,128: DEBUG/main] Retrieved datatype module galaxy.datatypes.sequence:MemePsp from the datatype registry for extension memepsp. +[2024-02-23 14:31:36,128: DEBUG/main] Retrieved datatype module galaxy.datatypes.xml:MEMEXml from the datatype registry for extension memexml. +[2024-02-23 14:31:36,128: DEBUG/main] Retrieved datatype module galaxy.datatypes.xml:CisML from the datatype registry for extension cisml. +[2024-02-23 14:31:36,128: DEBUG/main] Retrieved datatype module galaxy.datatypes.xml:GenericXml from the datatype registry for extension xml. +[2024-02-23 14:31:36,128: DEBUG/main] Retrieved datatype module galaxy.datatypes.xml:GenericXml from the datatype registry for extension xsd. +[2024-02-23 14:31:36,128: DEBUG/main] Retrieved datatype module galaxy.datatypes.xml:Dzi from the datatype registry for extension dzi. +[2024-02-23 14:31:36,128: DEBUG/main] Retrieved datatype module galaxy.datatypes.tabular:Vcf from the datatype registry for extension vcf. +[2024-02-23 14:31:36,128: DEBUG/main] Retrieved datatype module galaxy.datatypes.binary:Bcf from the datatype registry for extension bcf. +[2024-02-23 14:31:36,129: DEBUG/main] Retrieved datatype module galaxy.datatypes.binary:Bcf from the datatype registry for extension bcf_bgzip. +[2024-02-23 14:31:36,129: DEBUG/main] Retrieved datatype module galaxy.datatypes.binary:BcfUncompressed from the datatype registry for extension bcf_uncompressed. +[2024-02-23 14:31:36,129: DEBUG/main] Retrieved datatype module galaxy.datatypes.assembly:Velvet from the datatype registry for extension velvet. +[2024-02-23 14:31:36,129: DEBUG/main] Retrieved datatype module galaxy.datatypes.interval:Wiggle from the datatype registry for extension wig. +[2024-02-23 14:31:36,129: DEBUG/main] Retrieved datatype module galaxy.datatypes.binary:Binary from the datatype registry for extension interval_index. +[2024-02-23 14:31:36,129: DEBUG/main] Retrieved datatype module galaxy.datatypes.binary:Binary from the datatype registry for extension odgi. +[2024-02-23 14:31:36,129: DEBUG/main] Retrieved datatype module galaxy.datatypes.binary:CompressedArchive from the datatype registry for extension vg. +[2024-02-23 14:31:36,129: DEBUG/main] Retrieved datatype module galaxy.datatypes.binary:Binary from the datatype registry for extension xg. +[2024-02-23 14:31:36,129: DEBUG/main] Retrieved datatype module galaxy.datatypes.binary:Binary from the datatype registry for extension protobuf2. +[2024-02-23 14:31:36,130: DEBUG/main] Retrieved datatype module galaxy.datatypes.binary:Binary from the datatype registry for extension protobuf3. +[2024-02-23 14:31:36,130: DEBUG/main] Retrieved datatype module galaxy.datatypes.binary:Binary from the datatype registry for extension onnx. +[2024-02-23 14:31:36,130: DEBUG/main] Retrieved datatype module galaxy.datatypes.binary:Binary from the datatype registry for extension tabix. +[2024-02-23 14:31:36,130: DEBUG/main] Retrieved datatype module galaxy.datatypes.interval:IntervalTabix from the datatype registry for extension interval_tabix.gz. +[2024-02-23 14:31:36,130: DEBUG/main] Retrieved datatype module galaxy.datatypes.interval:JuicerMediumTabix from the datatype registry for extension juicer_medium_tabix.gz. +[2024-02-23 14:31:36,130: DEBUG/main] Retrieved datatype module galaxy.datatypes.interval:BedTabix from the datatype registry for extension bed_tabix.gz. +[2024-02-23 14:31:36,130: DEBUG/main] Retrieved datatype module galaxy.datatypes.interval:GffTabix from the datatype registry for extension gff_tabix.gz. +[2024-02-23 14:31:36,130: DEBUG/main] Retrieved datatype module galaxy.datatypes.binary:Binary from the datatype registry for extension bgzip. +[2024-02-23 14:31:36,130: DEBUG/main] Retrieved datatype module galaxy.datatypes.tabular:VcfGz from the datatype registry for extension vcf_bgzip. +[2024-02-23 14:31:36,130: DEBUG/main] Retrieved datatype module galaxy.datatypes.binary:Binary from the datatype registry for extension bus. +[2024-02-23 14:31:36,131: DEBUG/main] Retrieved datatype module galaxy.datatypes.binary:Binary from the datatype registry for extension kallisto.idx. +[2024-02-23 14:31:36,131: DEBUG/main] Retrieved datatype module galaxy.datatypes.xml:Phyloxml from the datatype registry for extension phyloxml. +[2024-02-23 14:31:36,131: DEBUG/main] Retrieved datatype module galaxy.datatypes.data:Newick from the datatype registry for extension newick. +[2024-02-23 14:31:36,131: DEBUG/main] Retrieved datatype module galaxy.datatypes.data:Newick from the datatype registry for extension nhx. +[2024-02-23 14:31:36,131: DEBUG/main] Retrieved datatype module galaxy.datatypes.data:Nexus from the datatype registry for extension nex. +[2024-02-23 14:31:36,131: DEBUG/main] Retrieved datatype module galaxy.datatypes.text:IQTree from the datatype registry for extension iqtree. +[2024-02-23 14:31:36,133: DEBUG/main] Retrieved datatype module galaxy.datatypes.mothur:SquareDistanceMatrix from the datatype registry for extension mldist. +[2024-02-23 14:31:36,135: DEBUG/main] Retrieved datatype module galaxy.datatypes.genetics:Affybatch from the datatype registry for extension affybatch. +[2024-02-23 14:31:36,135: DEBUG/main] Retrieved datatype module galaxy.datatypes.genetics:Eigenstratgeno from the datatype registry for extension eigenstratgeno. +[2024-02-23 14:31:36,136: DEBUG/main] Retrieved datatype module galaxy.datatypes.genetics:Eigenstratpca from the datatype registry for extension eigenstratpca. +[2024-02-23 14:31:36,136: DEBUG/main] Retrieved datatype module galaxy.datatypes.genetics:Eset from the datatype registry for extension eset. +[2024-02-23 14:31:36,136: DEBUG/main] Retrieved datatype module galaxy.datatypes.genetics:Fped from the datatype registry for extension fped. +[2024-02-23 14:31:36,136: DEBUG/main] Retrieved datatype module galaxy.datatypes.genetics:Fphe from the datatype registry for extension fphe. +[2024-02-23 14:31:36,136: DEBUG/main] Retrieved datatype module galaxy.datatypes.genetics:GenomeGraphs from the datatype registry for extension gg. +[2024-02-23 14:31:36,136: DEBUG/main] Retrieved datatype module galaxy.datatypes.genetics:ldIndep from the datatype registry for extension ldindep. +[2024-02-23 14:31:36,136: DEBUG/main] Retrieved datatype module galaxy.datatypes.genetics:MAlist from the datatype registry for extension malist. +[2024-02-23 14:31:36,136: DEBUG/main] Retrieved datatype module galaxy.datatypes.genetics:Lped from the datatype registry for extension lped. +[2024-02-23 14:31:36,136: DEBUG/main] Retrieved datatype module galaxy.datatypes.genetics:Pbed from the datatype registry for extension pbed. +[2024-02-23 14:31:36,136: DEBUG/main] Retrieved datatype module galaxy.datatypes.genetics:Pheno from the datatype registry for extension pheno. +[2024-02-23 14:31:36,136: DEBUG/main] Retrieved datatype module galaxy.datatypes.genetics:Pphe from the datatype registry for extension pphe. +[2024-02-23 14:31:36,137: DEBUG/main] Retrieved datatype module galaxy.datatypes.genetics:RexpBase from the datatype registry for extension rexpbase. +[2024-02-23 14:31:36,137: DEBUG/main] Retrieved datatype module galaxy.datatypes.genetics:Rgenetics from the datatype registry for extension rgenetics. +[2024-02-23 14:31:36,137: DEBUG/main] Retrieved datatype module galaxy.datatypes.genetics:Snptest from the datatype registry for extension snptest. +[2024-02-23 14:31:36,137: DEBUG/main] Retrieved datatype module galaxy.datatypes.genetics:SNPMatrix from the datatype registry for extension snpmatrix. +[2024-02-23 14:31:36,137: DEBUG/main] Retrieved datatype module galaxy.datatypes.binary:ExcelXls from the datatype registry for extension xls. +[2024-02-23 14:31:36,137: DEBUG/main] Retrieved datatype module galaxy.datatypes.text:Ipynb from the datatype registry for extension ipynb. +[2024-02-23 14:31:36,137: DEBUG/main] Retrieved datatype module galaxy.datatypes.text:Json from the datatype registry for extension json. +[2024-02-23 14:31:36,137: DEBUG/main] Retrieved datatype module galaxy.datatypes.text:ExpressionJson from the datatype registry for extension expression.json. +[2024-02-23 14:31:36,138: DEBUG/main] Retrieved datatype module galaxy.datatypes.graph:Xgmml from the datatype registry for extension xgmml. +[2024-02-23 14:31:36,138: DEBUG/main] Retrieved datatype module galaxy.datatypes.graph:Sif from the datatype registry for extension sif. +[2024-02-23 14:31:36,139: DEBUG/main] Retrieved datatype module galaxy.datatypes.triples:Triples from the datatype registry for extension triples. +[2024-02-23 14:31:36,139: DEBUG/main] Retrieved datatype module galaxy.datatypes.triples:HDT from the datatype registry for extension hdt. +[2024-02-23 14:31:36,140: DEBUG/main] Retrieved datatype module galaxy.datatypes.triples:NTriples from the datatype registry for extension nt. +[2024-02-23 14:31:36,140: DEBUG/main] Retrieved datatype module galaxy.datatypes.triples:N3 from the datatype registry for extension n3. +[2024-02-23 14:31:36,140: DEBUG/main] Retrieved datatype module galaxy.datatypes.triples:Turtle from the datatype registry for extension ttl. +[2024-02-23 14:31:36,140: DEBUG/main] Retrieved datatype module galaxy.datatypes.triples:Rdf from the datatype registry for extension rdf. +[2024-02-23 14:31:36,140: DEBUG/main] Retrieved datatype module galaxy.datatypes.triples:Jsonld from the datatype registry for extension jsonld. +[2024-02-23 14:31:36,140: DEBUG/main] Retrieved datatype module galaxy.datatypes.binary:ExcelXls from the datatype registry for extension excel.xls. +[2024-02-23 14:31:36,140: DEBUG/main] Retrieved datatype module galaxy.datatypes.binary:Xlsx from the datatype registry for extension xlsx. +[2024-02-23 14:31:36,140: DEBUG/main] Retrieved datatype module galaxy.datatypes.binary:Binary from the datatype registry for extension docx. +[2024-02-23 14:31:36,140: DEBUG/main] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension btwisted. +[2024-02-23 14:31:36,140: DEBUG/main] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension cai. +[2024-02-23 14:31:36,140: DEBUG/main] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension cat_db. +[2024-02-23 14:31:36,140: DEBUG/main] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension charge. +[2024-02-23 14:31:36,141: DEBUG/main] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension checktrans. +[2024-02-23 14:31:36,141: DEBUG/main] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension chips. +[2024-02-23 14:31:36,141: DEBUG/main] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension codcmp. +[2024-02-23 14:31:36,141: DEBUG/main] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension coderet. +[2024-02-23 14:31:36,141: DEBUG/main] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension compseq. +[2024-02-23 14:31:36,141: DEBUG/main] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension cpgplot. +[2024-02-23 14:31:36,141: DEBUG/main] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension cpgreport. +[2024-02-23 14:31:36,141: DEBUG/main] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension cusp. +[2024-02-23 14:31:36,141: DEBUG/main] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension cut. +[2024-02-23 14:31:36,141: DEBUG/main] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension dan. +[2024-02-23 14:31:36,141: DEBUG/main] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension digest. +[2024-02-23 14:31:36,142: DEBUG/main] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension dreg. +[2024-02-23 14:31:36,142: DEBUG/main] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension einverted. +[2024-02-23 14:31:36,142: DEBUG/main] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension epestfind. +[2024-02-23 14:31:36,142: DEBUG/main] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension equicktandem. +[2024-02-23 14:31:36,142: DEBUG/main] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension est2genome. +[2024-02-23 14:31:36,142: DEBUG/main] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension etandem. +[2024-02-23 14:31:36,142: DEBUG/main] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension freak. +[2024-02-23 14:31:36,142: DEBUG/main] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension fuzznuc. +[2024-02-23 14:31:36,142: DEBUG/main] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension fuzzpro. +[2024-02-23 14:31:36,142: DEBUG/main] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension fuzztran. +[2024-02-23 14:31:36,142: DEBUG/main] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension garnier. +[2024-02-23 14:31:36,143: DEBUG/main] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension geecee. +[2024-02-23 14:31:36,143: DEBUG/main] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension helixturnhelix. +[2024-02-23 14:31:36,143: DEBUG/main] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension hmoment. +[2024-02-23 14:31:36,143: DEBUG/main] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension isochore. +[2024-02-23 14:31:36,143: DEBUG/main] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension match. +[2024-02-23 14:31:36,143: DEBUG/main] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension nametable. +[2024-02-23 14:31:36,143: DEBUG/main] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension needle. +[2024-02-23 14:31:36,143: DEBUG/main] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension newcpgreport. +[2024-02-23 14:31:36,143: DEBUG/main] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension newcpgseek. +[2024-02-23 14:31:36,143: DEBUG/main] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension noreturn. +[2024-02-23 14:31:36,144: DEBUG/main] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension palindrome. +[2024-02-23 14:31:36,144: DEBUG/main] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension pepcoil. +[2024-02-23 14:31:36,144: DEBUG/main] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension pepinfo. +[2024-02-23 14:31:36,144: DEBUG/main] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension pepstats. +[2024-02-23 14:31:36,144: DEBUG/main] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension polydot. +[2024-02-23 14:31:36,144: DEBUG/main] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension preg. +[2024-02-23 14:31:36,144: DEBUG/main] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension prettyseq. +[2024-02-23 14:31:36,144: DEBUG/main] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension primersearch. +[2024-02-23 14:31:36,144: DEBUG/main] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension showfeat. +[2024-02-23 14:31:36,144: DEBUG/main] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension showorf. +[2024-02-23 14:31:36,144: DEBUG/main] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension sixpack. +[2024-02-23 14:31:36,145: DEBUG/main] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension strider. +[2024-02-23 14:31:36,145: DEBUG/main] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension supermatcher. +[2024-02-23 14:31:36,145: DEBUG/main] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension syco. +[2024-02-23 14:31:36,145: DEBUG/main] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension textsearch. +[2024-02-23 14:31:36,145: DEBUG/main] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension vectorstrip. +[2024-02-23 14:31:36,145: DEBUG/main] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension wobble. +[2024-02-23 14:31:36,145: DEBUG/main] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension wordcount. +[2024-02-23 14:31:36,145: DEBUG/main] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension dbmotif. +[2024-02-23 14:31:36,145: DEBUG/main] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension diffseq. +[2024-02-23 14:31:36,145: DEBUG/main] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension excel. +[2024-02-23 14:31:36,145: DEBUG/main] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension feattable. +[2024-02-23 14:31:36,146: DEBUG/main] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension motif. +[2024-02-23 14:31:36,146: DEBUG/main] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension regions. +[2024-02-23 14:31:36,146: DEBUG/main] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension seqtable. +[2024-02-23 14:31:36,146: DEBUG/main] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension simple. +[2024-02-23 14:31:36,146: DEBUG/main] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension table. +[2024-02-23 14:31:36,146: DEBUG/main] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension tagseq. +[2024-02-23 14:31:36,146: DEBUG/main] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension acedb. +[2024-02-23 14:31:36,146: DEBUG/main] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension clustal. +[2024-02-23 14:31:36,146: DEBUG/main] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension codata. +[2024-02-23 14:31:36,146: DEBUG/main] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension embl. +[2024-02-23 14:31:36,146: DEBUG/main] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension fitch. +[2024-02-23 14:31:36,147: DEBUG/main] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension gcg. +[2024-02-23 14:31:36,147: DEBUG/main] Retrieved datatype module galaxy.datatypes.sequence:Genbank from the datatype registry for extension genbank. +[2024-02-23 14:31:36,147: DEBUG/main] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension hennig86. +[2024-02-23 14:31:36,147: DEBUG/main] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension ig. +[2024-02-23 14:31:36,147: DEBUG/main] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension jackknifer. +[2024-02-23 14:31:36,147: DEBUG/main] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension jackknifernon. +[2024-02-23 14:31:36,147: DEBUG/main] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension mega. +[2024-02-23 14:31:36,147: DEBUG/main] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension meganon. +[2024-02-23 14:31:36,147: DEBUG/main] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension ncbi. +[2024-02-23 14:31:36,148: DEBUG/main] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension nexus. +[2024-02-23 14:31:36,148: DEBUG/main] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension nexusnon. +[2024-02-23 14:31:36,148: DEBUG/main] Retrieved datatype module galaxy.datatypes.phylip:Phylip from the datatype registry for extension phylip. +[2024-02-23 14:31:36,148: DEBUG/main] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension phylipnon. +[2024-02-23 14:31:36,148: DEBUG/main] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension pir. +[2024-02-23 14:31:36,148: DEBUG/main] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension staden. +[2024-02-23 14:31:36,149: DEBUG/main] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension swiss. +[2024-02-23 14:31:36,150: DEBUG/main] Retrieved datatype module galaxy.datatypes.msa:Msf from the datatype registry for extension msf. +[2024-02-23 14:31:36,150: DEBUG/main] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension markx0. +[2024-02-23 14:31:36,150: DEBUG/main] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension markx1. +[2024-02-23 14:31:36,150: DEBUG/main] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension markx10. +[2024-02-23 14:31:36,150: DEBUG/main] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension markx2. +[2024-02-23 14:31:36,150: DEBUG/main] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension markx3. +[2024-02-23 14:31:36,150: DEBUG/main] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension pair. +[2024-02-23 14:31:36,150: DEBUG/main] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension score. +[2024-02-23 14:31:36,150: DEBUG/main] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension srs. +[2024-02-23 14:31:36,151: DEBUG/main] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension srspair. +[2024-02-23 14:31:36,151: DEBUG/main] Retrieved datatype module galaxy.datatypes.annotation:SnapHmm from the datatype registry for extension snaphmm. +[2024-02-23 14:31:36,151: DEBUG/main] Retrieved datatype module galaxy.datatypes.annotation:Augustus from the datatype registry for extension augustus. +[2024-02-23 14:31:36,151: DEBUG/main] Retrieved datatype module galaxy.datatypes.binary:ICM from the datatype registry for extension icm. +[2024-02-23 14:31:36,151: DEBUG/main] Retrieved datatype module galaxy.datatypes.msa:InfernalCM from the datatype registry for extension cm. +[2024-02-23 14:31:36,151: DEBUG/main] Retrieved datatype module galaxy.datatypes.msa:Hmmer2 from the datatype registry for extension hmm2. +[2024-02-23 14:31:36,151: DEBUG/main] Retrieved datatype module galaxy.datatypes.msa:Hmmer3 from the datatype registry for extension hmm3. +[2024-02-23 14:31:36,151: DEBUG/main] Retrieved datatype module galaxy.datatypes.msa:Stockholm_1_0 from the datatype registry for extension stockholm. +[2024-02-23 14:31:36,152: DEBUG/main] Retrieved datatype module galaxy.datatypes.msa:MauveXmfa from the datatype registry for extension xmfa. +[2024-02-23 14:31:36,152: DEBUG/main] Retrieved datatype module galaxy.datatypes.microarrays:Cel from the datatype registry for extension cel. +[2024-02-23 14:31:36,152: DEBUG/main] Retrieved datatype module galaxy.datatypes.microarrays:Gpr from the datatype registry for extension gpr. +[2024-02-23 14:31:36,152: DEBUG/main] Retrieved datatype module galaxy.datatypes.microarrays:Gal from the datatype registry for extension gal. +[2024-02-23 14:31:36,152: DEBUG/main] Retrieved datatype module galaxy.datatypes.binary:RDS from the datatype registry for extension rds. +[2024-02-23 14:31:36,153: DEBUG/main] Retrieved datatype module galaxy.datatypes.binary:RDS from the datatype registry for extension phyloseq. +[2024-02-23 14:31:36,153: DEBUG/main] Retrieved datatype module galaxy.datatypes.binary:RData from the datatype registry for extension rdata. +[2024-02-23 14:31:36,153: DEBUG/main] Retrieved datatype module galaxy.datatypes.binary:RData from the datatype registry for extension rdata.sce. +[2024-02-23 14:31:36,153: DEBUG/main] Retrieved datatype module galaxy.datatypes.binary:RData from the datatype registry for extension rdata.xcms.raw. +[2024-02-23 14:31:36,153: DEBUG/main] Retrieved datatype module galaxy.datatypes.binary:RData from the datatype registry for extension rdata.msnbase.raw. +[2024-02-23 14:31:36,153: DEBUG/main] Retrieved datatype module galaxy.datatypes.binary:RData from the datatype registry for extension rdata.xcms.findchrompeaks. +[2024-02-23 14:31:36,153: DEBUG/main] Retrieved datatype module galaxy.datatypes.binary:RData from the datatype registry for extension rdata.xcms.group. +[2024-02-23 14:31:36,153: DEBUG/main] Retrieved datatype module galaxy.datatypes.binary:RData from the datatype registry for extension rdata.xcms.retcor. +[2024-02-23 14:31:36,153: DEBUG/main] Retrieved datatype module galaxy.datatypes.binary:RData from the datatype registry for extension rdata.xcms.fillpeaks. +[2024-02-23 14:31:36,153: DEBUG/main] Retrieved datatype module galaxy.datatypes.binary:RData from the datatype registry for extension rdata.camera.positive. +[2024-02-23 14:31:36,154: DEBUG/main] Retrieved datatype module galaxy.datatypes.binary:RData from the datatype registry for extension rdata.camera.negative. +[2024-02-23 14:31:36,154: DEBUG/main] Retrieved datatype module galaxy.datatypes.binary:RData from the datatype registry for extension rdata.camera.quick. +[2024-02-23 14:31:36,154: DEBUG/main] Retrieved datatype module galaxy.datatypes.hdf5:HDF5SummarizedExperiment from the datatype registry for extension rdata.se. +[2024-02-23 14:31:36,154: DEBUG/main] Retrieved datatype module galaxy.datatypes.binary:Binary from the datatype registry for extension rdock_as. +[2024-02-23 14:31:36,154: DEBUG/main] Retrieved datatype module galaxy.datatypes.binary:OxliCountGraph from the datatype registry for extension oxlicg. +[2024-02-23 14:31:36,154: DEBUG/main] Retrieved datatype module galaxy.datatypes.binary:OxliNodeGraph from the datatype registry for extension oxling. +[2024-02-23 14:31:36,154: DEBUG/main] Retrieved datatype module galaxy.datatypes.binary:OxliTagSet from the datatype registry for extension oxlits. +[2024-02-23 14:31:36,155: DEBUG/main] Retrieved datatype module galaxy.datatypes.binary:OxliStopTags from the datatype registry for extension oxlist. +[2024-02-23 14:31:36,155: DEBUG/main] Retrieved datatype module galaxy.datatypes.binary:OxliSubset from the datatype registry for extension oxliss. +[2024-02-23 14:31:36,155: DEBUG/main] Retrieved datatype module galaxy.datatypes.binary:OxliGraphLabels from the datatype registry for extension oxligl. +[2024-02-23 14:31:36,156: DEBUG/main] Retrieved datatype module galaxy.datatypes.constructive_solid_geometry:STL from the datatype registry for extension stl. +[2024-02-23 14:31:36,156: DEBUG/main] Retrieved datatype module galaxy.datatypes.constructive_solid_geometry:PlyAscii from the datatype registry for extension plyascii. +[2024-02-23 14:31:36,156: DEBUG/main] Retrieved datatype module galaxy.datatypes.constructive_solid_geometry:PlyBinary from the datatype registry for extension plybinary. +[2024-02-23 14:31:36,156: DEBUG/main] Retrieved datatype module galaxy.datatypes.constructive_solid_geometry:VtkAscii from the datatype registry for extension vtkascii. +[2024-02-23 14:31:36,156: DEBUG/main] Retrieved datatype module galaxy.datatypes.constructive_solid_geometry:VtkBinary from the datatype registry for extension vtkbinary. +[2024-02-23 14:31:36,157: DEBUG/main] Retrieved datatype module galaxy.datatypes.text:Biom1 from the datatype registry for extension biom1. +[2024-02-23 14:31:36,157: DEBUG/main] Retrieved datatype module galaxy.datatypes.binary:Biom2 from the datatype registry for extension biom2. +[2024-02-23 14:31:36,157: DEBUG/main] Retrieved datatype module galaxy.datatypes.binary:MashSketch from the datatype registry for extension msh. +[2024-02-23 14:31:36,157: DEBUG/main] Retrieved datatype module galaxy.datatypes.interval:ScIdx from the datatype registry for extension scidx. +[2024-02-23 14:31:36,164: DEBUG/main] Retrieved datatype module galaxy.datatypes.molecules:SMILES from the datatype registry for extension smi. +[2024-02-23 14:31:36,165: DEBUG/main] Retrieved datatype module galaxy.datatypes.molecules:SDF from the datatype registry for extension sdf. +[2024-02-23 14:31:36,165: DEBUG/main] Retrieved datatype module galaxy.datatypes.molecules:InChI from the datatype registry for extension inchi. +[2024-02-23 14:31:36,165: DEBUG/main] Retrieved datatype module galaxy.datatypes.molecules:MOL from the datatype registry for extension mol. +[2024-02-23 14:31:36,165: DEBUG/main] Retrieved datatype module galaxy.datatypes.molecules:MOL2 from the datatype registry for extension mol2. +[2024-02-23 14:31:36,165: DEBUG/main] Retrieved datatype module galaxy.datatypes.molecules:CML from the datatype registry for extension cml. +[2024-02-23 14:31:36,165: DEBUG/main] Retrieved datatype module galaxy.datatypes.molecules:FPS from the datatype registry for extension fps. +[2024-02-23 14:31:36,166: DEBUG/main] Retrieved datatype module galaxy.datatypes.molecules:OBFS from the datatype registry for extension obfs. +[2024-02-23 14:31:36,166: DEBUG/main] Retrieved datatype module galaxy.datatypes.molecules:DRF from the datatype registry for extension drf. +[2024-02-23 14:31:36,166: DEBUG/main] Retrieved datatype module galaxy.datatypes.molecules:PHAR from the datatype registry for extension phar. +[2024-02-23 14:31:36,166: DEBUG/main] Retrieved datatype module galaxy.datatypes.molecules:PDB from the datatype registry for extension pdb. +[2024-02-23 14:31:36,166: DEBUG/main] Retrieved datatype module galaxy.datatypes.molecules:PDBQT from the datatype registry for extension pdbqt. +[2024-02-23 14:31:36,166: DEBUG/main] Retrieved datatype module galaxy.datatypes.molecules:PQR from the datatype registry for extension pqr. +[2024-02-23 14:31:36,166: DEBUG/main] Retrieved datatype module galaxy.datatypes.molecules:Cell from the datatype registry for extension cell. +[2024-02-23 14:31:36,166: DEBUG/main] Retrieved datatype module galaxy.datatypes.molecules:CIF from the datatype registry for extension cif. +[2024-02-23 14:31:36,166: DEBUG/main] Retrieved datatype module galaxy.datatypes.molecules:XYZ from the datatype registry for extension xyz. +[2024-02-23 14:31:36,166: DEBUG/main] Retrieved datatype module galaxy.datatypes.molecules:ExtendedXYZ from the datatype registry for extension extxyz. +[2024-02-23 14:31:36,166: DEBUG/main] Retrieved datatype module galaxy.datatypes.binary:Trr from the datatype registry for extension trr. +[2024-02-23 14:31:36,167: DEBUG/main] Retrieved datatype module galaxy.datatypes.binary:Dcd from the datatype registry for extension dcd. +[2024-02-23 14:31:36,167: DEBUG/main] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension top. +[2024-02-23 14:31:36,167: DEBUG/main] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension prmtop. +[2024-02-23 14:31:36,167: DEBUG/main] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension itp. +[2024-02-23 14:31:36,167: DEBUG/main] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension mdp. +[2024-02-23 14:31:36,167: DEBUG/main] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension ndx. +[2024-02-23 14:31:36,167: DEBUG/main] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension xvg. +[2024-02-23 14:31:36,167: DEBUG/main] Retrieved datatype module galaxy.datatypes.binary:Xtc from the datatype registry for extension xtc. +[2024-02-23 14:31:36,167: DEBUG/main] Retrieved datatype module galaxy.datatypes.binary:Cpt from the datatype registry for extension cpt. +[2024-02-23 14:31:36,168: DEBUG/main] Retrieved datatype module galaxy.datatypes.binary:Edr from the datatype registry for extension edr. +[2024-02-23 14:31:36,168: DEBUG/main] Retrieved datatype module galaxy.datatypes.binary:Binary from the datatype registry for extension tpr. +[2024-02-23 14:31:36,168: DEBUG/main] Retrieved datatype module galaxy.datatypes.molecules:GRO from the datatype registry for extension gro. +[2024-02-23 14:31:36,168: DEBUG/main] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension inpcrd. +[2024-02-23 14:31:36,168: DEBUG/main] Retrieved datatype module galaxy.datatypes.binary:Vel from the datatype registry for extension vel. +[2024-02-23 14:31:36,168: DEBUG/main] Retrieved datatype module galaxy.datatypes.molecules:grd from the datatype registry for extension grd. +[2024-02-23 14:31:36,168: DEBUG/main] Retrieved datatype module galaxy.datatypes.molecules:grdtgz from the datatype registry for extension grd.tgz. +[2024-02-23 14:31:36,168: DEBUG/main] Retrieved datatype module galaxy.datatypes.mothur:Otu from the datatype registry for extension mothur.otu. +[2024-02-23 14:31:36,168: DEBUG/main] Retrieved datatype module galaxy.datatypes.mothur:Otu from the datatype registry for extension mothur.list. +[2024-02-23 14:31:36,169: DEBUG/main] Retrieved datatype module galaxy.datatypes.mothur:Sabund from the datatype registry for extension mothur.sabund. +[2024-02-23 14:31:36,169: DEBUG/main] Retrieved datatype module galaxy.datatypes.mothur:Sabund from the datatype registry for extension mothur.rabund. +[2024-02-23 14:31:36,169: DEBUG/main] Retrieved datatype module galaxy.datatypes.mothur:GroupAbund from the datatype registry for extension mothur.shared. +[2024-02-23 14:31:36,169: DEBUG/main] Retrieved datatype module galaxy.datatypes.mothur:GroupAbund from the datatype registry for extension mothur.relabund. +[2024-02-23 14:31:36,169: DEBUG/main] Retrieved datatype module galaxy.datatypes.mothur:Names from the datatype registry for extension mothur.names. +[2024-02-23 14:31:36,169: DEBUG/main] Retrieved datatype module galaxy.datatypes.mothur:Group from the datatype registry for extension mothur.design. +[2024-02-23 14:31:36,169: DEBUG/main] Retrieved datatype module galaxy.datatypes.mothur:Summary from the datatype registry for extension mothur.summary. +[2024-02-23 14:31:36,169: DEBUG/main] Retrieved datatype module galaxy.datatypes.mothur:Group from the datatype registry for extension mothur.groups. +[2024-02-23 14:31:36,169: DEBUG/main] Retrieved datatype module galaxy.datatypes.mothur:Oligos from the datatype registry for extension mothur.oligos. +[2024-02-23 14:31:36,170: DEBUG/main] Retrieved datatype module galaxy.datatypes.sequence:Fasta from the datatype registry for extension mothur.align. +[2024-02-23 14:31:36,170: DEBUG/main] Retrieved datatype module galaxy.datatypes.mothur:AccNos from the datatype registry for extension mothur.accnos. +[2024-02-23 14:31:36,170: DEBUG/main] Retrieved datatype module galaxy.datatypes.mothur:AccNos from the datatype registry for extension mothur.otulabels. +[2024-02-23 14:31:36,170: DEBUG/main] Retrieved datatype module galaxy.datatypes.tabular:Tabular from the datatype registry for extension mothur.otu.corr. +[2024-02-23 14:31:36,170: DEBUG/main] Retrieved datatype module galaxy.datatypes.mothur:SecondaryStructureMap from the datatype registry for extension mothur.map. +[2024-02-23 14:31:36,170: DEBUG/main] Retrieved datatype module galaxy.datatypes.mothur:AlignCheck from the datatype registry for extension mothur.align.check. +[2024-02-23 14:31:36,170: DEBUG/main] Retrieved datatype module galaxy.datatypes.mothur:AlignReport from the datatype registry for extension mothur.align.report. +[2024-02-23 14:31:36,170: DEBUG/main] Retrieved datatype module galaxy.datatypes.mothur:LaneMask from the datatype registry for extension mothur.filter. +[2024-02-23 14:31:36,170: DEBUG/main] Retrieved datatype module galaxy.datatypes.mothur:DistanceMatrix from the datatype registry for extension mothur.dist. +[2024-02-23 14:31:36,170: DEBUG/main] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension mothur.tre. +[2024-02-23 14:31:36,171: DEBUG/main] Retrieved datatype module galaxy.datatypes.mothur:PairwiseDistanceMatrix from the datatype registry for extension mothur.pair.dist. +[2024-02-23 14:31:36,171: DEBUG/main] Retrieved datatype module galaxy.datatypes.mothur:SquareDistanceMatrix from the datatype registry for extension mothur.square.dist. +[2024-02-23 14:31:36,171: DEBUG/main] Retrieved datatype module galaxy.datatypes.mothur:LowerTriangleDistanceMatrix from the datatype registry for extension mothur.lower.dist. +[2024-02-23 14:31:36,171: DEBUG/main] Retrieved datatype module galaxy.datatypes.mothur:RefTaxonomy from the datatype registry for extension mothur.ref.taxonomy. +[2024-02-23 14:31:36,171: DEBUG/main] Retrieved datatype module galaxy.datatypes.mothur:RefTaxonomy from the datatype registry for extension mothur.seq.taxonomy. +[2024-02-23 14:31:36,171: DEBUG/main] Retrieved datatype module galaxy.datatypes.mothur:RefTaxonomy from the datatype registry for extension mothur.rdp.taxonomy. +[2024-02-23 14:31:36,171: DEBUG/main] Retrieved datatype module galaxy.datatypes.mothur:ConsensusTaxonomy from the datatype registry for extension mothur.cons.taxonomy. +[2024-02-23 14:31:36,171: DEBUG/main] Retrieved datatype module galaxy.datatypes.mothur:TaxonomySummary from the datatype registry for extension mothur.tax.summary. +[2024-02-23 14:31:36,171: DEBUG/main] Retrieved datatype module galaxy.datatypes.mothur:Frequency from the datatype registry for extension mothur.freq. +[2024-02-23 14:31:36,171: DEBUG/main] Retrieved datatype module galaxy.datatypes.mothur:Quantile from the datatype registry for extension mothur.quan. +[2024-02-23 14:31:36,172: DEBUG/main] Retrieved datatype module galaxy.datatypes.mothur:Quantile from the datatype registry for extension mothur.filtered.quan. +[2024-02-23 14:31:36,172: DEBUG/main] Retrieved datatype module galaxy.datatypes.mothur:Quantile from the datatype registry for extension mothur.masked.quan. +[2024-02-23 14:31:36,172: DEBUG/main] Retrieved datatype module galaxy.datatypes.mothur:Quantile from the datatype registry for extension mothur.filtered.masked.quan. +[2024-02-23 14:31:36,172: DEBUG/main] Retrieved datatype module galaxy.datatypes.mothur:Axes from the datatype registry for extension mothur.axes. +[2024-02-23 14:31:36,172: DEBUG/main] Retrieved datatype module galaxy.datatypes.mothur:SffFlow from the datatype registry for extension mothur.sff.flow. +[2024-02-23 14:31:36,172: DEBUG/main] Retrieved datatype module galaxy.datatypes.mothur:CountTable from the datatype registry for extension mothur.count_table. +[2024-02-23 14:31:36,174: DEBUG/main] Retrieved datatype module galaxy.datatypes.neo4j:Neo4jDB from the datatype registry for extension neostore. +[2024-02-23 14:31:36,174: DEBUG/main] Retrieved datatype module galaxy.datatypes.neo4j:Neo4jDBzip from the datatype registry for extension neostore.zip. +[2024-02-23 14:31:36,175: DEBUG/main] Retrieved datatype module galaxy.datatypes.tracks:UCSCTrackHub from the datatype registry for extension trackhub. +[2024-02-23 14:31:36,175: DEBUG/main] Retrieved datatype module galaxy.datatypes.blast:BlastXml from the datatype registry for extension blastxml. +[2024-02-23 14:31:36,176: DEBUG/main] Retrieved datatype module galaxy.datatypes.blast:BlastNucDb from the datatype registry for extension blastdbn. +[2024-02-23 14:31:36,176: DEBUG/main] Retrieved datatype module galaxy.datatypes.blast:BlastProtDb from the datatype registry for extension blastdbp. +[2024-02-23 14:31:36,176: DEBUG/main] Retrieved datatype module galaxy.datatypes.blast:BlastDomainDb from the datatype registry for extension blastdbd. +[2024-02-23 14:31:36,176: DEBUG/main] Retrieved datatype module galaxy.datatypes.blast:LastDb from the datatype registry for extension lastdb. +[2024-02-23 14:31:36,176: DEBUG/main] Retrieved datatype module galaxy.datatypes.blast:BlastNucDb5 from the datatype registry for extension blastdbn5. +[2024-02-23 14:31:36,176: DEBUG/main] Retrieved datatype module galaxy.datatypes.blast:BlastProtDb5 from the datatype registry for extension blastdbp5. +[2024-02-23 14:31:36,176: DEBUG/main] Retrieved datatype module galaxy.datatypes.blast:BlastDomainDb5 from the datatype registry for extension blastdbd5. +[2024-02-23 14:31:36,176: DEBUG/main] Retrieved datatype module galaxy.datatypes.data:GenericAsn1 from the datatype registry for extension maskinfo-asn1. +[2024-02-23 14:31:36,177: DEBUG/main] Retrieved datatype module galaxy.datatypes.binary:GenericAsn1Binary from the datatype registry for extension maskinfo-asn1-binary. +[2024-02-23 14:31:36,177: DEBUG/main] Retrieved datatype module galaxy.datatypes.data:GenericAsn1 from the datatype registry for extension pssm-asn1. +[2024-02-23 14:31:36,177: DEBUG/main] Retrieved datatype module galaxy.datatypes.plant_tribes:PlantTribesKsComponents from the datatype registry for extension ptkscmp. +[2024-02-23 14:31:36,177: DEBUG/main] Retrieved datatype module galaxy.datatypes.plant_tribes:Smat from the datatype registry for extension smat. +[2024-02-23 14:31:36,177: DEBUG/main] Retrieved datatype module galaxy.datatypes.genetics:GenotypeMatrix from the datatype registry for extension alohomora_gts. +[2024-02-23 14:31:36,178: DEBUG/main] Retrieved datatype module galaxy.datatypes.tabular:Tabular from the datatype registry for extension alohomora_map. +[2024-02-23 14:31:36,178: DEBUG/main] Retrieved datatype module galaxy.datatypes.tabular:Tabular from the datatype registry for extension alohomora_maf. +[2024-02-23 14:31:36,178: DEBUG/main] Retrieved datatype module galaxy.datatypes.tabular:Tabular from the datatype registry for extension alohomora_ped. +[2024-02-23 14:31:36,178: DEBUG/main] Retrieved datatype module galaxy.datatypes.tabular:Tabular from the datatype registry for extension linkage_pedin. +[2024-02-23 14:31:36,178: DEBUG/main] Retrieved datatype module galaxy.datatypes.genetics:DataIn from the datatype registry for extension linkage_datain. +[2024-02-23 14:31:36,178: DEBUG/main] Retrieved datatype module galaxy.datatypes.genetics:MarkerMap from the datatype registry for extension linkage_map. +[2024-02-23 14:31:36,178: DEBUG/main] Retrieved datatype module galaxy.datatypes.tabular:Tabular from the datatype registry for extension allegro_ihaplo. +[2024-02-23 14:31:36,178: DEBUG/main] Retrieved datatype module galaxy.datatypes.tabular:Tabular from the datatype registry for extension allegro_descent. +[2024-02-23 14:31:36,179: DEBUG/main] Retrieved datatype module galaxy.datatypes.genetics:AllegroLOD from the datatype registry for extension allegro_fparam. +[2024-02-23 14:31:36,179: DEBUG/main] Retrieved datatype module galaxy.datatypes.genetics:IdeasPre from the datatype registry for extension ideaspre. +[2024-02-23 14:31:36,179: DEBUG/main] Retrieved datatype module galaxy.datatypes.xml:Sbml from the datatype registry for extension sbml. +[2024-02-23 14:31:36,179: DEBUG/main] Retrieved datatype module galaxy.datatypes.spaln:SpalnNuclDb from the datatype registry for extension spalndbnp. +[2024-02-23 14:31:36,179: DEBUG/main] Retrieved datatype module galaxy.datatypes.spaln:SpalnProtDb from the datatype registry for extension spalndba. +[2024-02-23 14:31:36,180: DEBUG/main] Retrieved datatype module galaxy.datatypes.binary:RDS from the datatype registry for extension dada2_dada. +[2024-02-23 14:31:36,180: DEBUG/main] Retrieved datatype module galaxy.datatypes.binary:RDS from the datatype registry for extension dada2_errorrates. +[2024-02-23 14:31:36,180: DEBUG/main] Retrieved datatype module galaxy.datatypes.binary:RDS from the datatype registry for extension dada2_mergepairs. +[2024-02-23 14:31:36,180: DEBUG/main] Retrieved datatype module galaxy.datatypes.tabular:Tabular from the datatype registry for extension dada2_sequencetable. +[2024-02-23 14:31:36,180: DEBUG/main] Retrieved datatype module galaxy.datatypes.tabular:Tabular from the datatype registry for extension dada2_uniques. +[2024-02-23 14:31:36,180: DEBUG/main] Retrieved datatype module galaxy.datatypes.binary:RDS from the datatype registry for extension ampvis2. +[2024-02-23 14:31:36,180: DEBUG/main] Retrieved datatype module galaxy.datatypes.binary:Binary from the datatype registry for extension ckpt. +[2024-02-23 14:31:36,180: DEBUG/main] Retrieved datatype module galaxy.datatypes.binary:Binary from the datatype registry for extension tgz. +[2024-02-23 14:31:36,192: DEBUG/main] Retrieved datatype module galaxy.datatypes.media:Wav from the datatype registry for extension wav. +[2024-02-23 14:31:36,192: DEBUG/main] Retrieved datatype module galaxy.datatypes.media:Mp3 from the datatype registry for extension mp3. +[2024-02-23 14:31:36,193: DEBUG/main] Retrieved datatype module galaxy.datatypes.media:Mkv from the datatype registry for extension mkv. +[2024-02-23 14:31:36,193: DEBUG/main] Retrieved datatype module galaxy.datatypes.media:Mp4 from the datatype registry for extension mp4. +[2024-02-23 14:31:36,193: DEBUG/main] Retrieved datatype module galaxy.datatypes.media:Flv from the datatype registry for extension flv. +[2024-02-23 14:31:36,193: DEBUG/main] Retrieved datatype module galaxy.datatypes.media:Mpg from the datatype registry for extension mpg. +[2024-02-23 14:31:36,195: DEBUG/main] Retrieved datatype module galaxy.datatypes.speech:TextGrid from the datatype registry for extension textgrid. +[2024-02-23 14:31:36,195: DEBUG/main] Retrieved datatype module galaxy.datatypes.speech:BPF from the datatype registry for extension par. +[2024-02-23 14:31:36,195: DEBUG/main] Retrieved datatype module galaxy.datatypes.tabular:Tabular from the datatype registry for extension ffindex. +[2024-02-23 14:31:36,196: DEBUG/main] Retrieved datatype module galaxy.datatypes.data:Data from the datatype registry for extension ffdata. +[2024-02-23 14:31:36,196: DEBUG/main] Retrieved datatype module galaxy.datatypes.binary:Pretext from the datatype registry for extension pretext. +[2024-02-23 14:31:36,196: DEBUG/main] Retrieved datatype module galaxy.datatypes.text:Html from the datatype registry for extension immuneml_receptors.html. +[2024-02-23 14:31:36,197: DEBUG/main] Retrieved datatype module galaxy.datatypes.binary:HexrdMaterials from the datatype registry for extension hexrd.materials.h5. +[2024-02-23 14:31:36,197: DEBUG/main] Retrieved datatype module galaxy.datatypes.binary:Npz from the datatype registry for extension npz. +[2024-02-23 14:31:36,197: DEBUG/main] Retrieved datatype module galaxy.datatypes.binary:HexrdImagesNpz from the datatype registry for extension hexrd.images.npz. +[2024-02-23 14:31:36,197: DEBUG/main] Retrieved datatype module galaxy.datatypes.binary:HexrdEtaOmeNpz from the datatype registry for extension hexrd.eta_ome.npz. +[2024-02-23 14:31:36,198: DEBUG/main] Retrieved datatype module galaxy.datatypes.binary:Npz from the datatype registry for extension hexrd.scored_orientations.npz. +[2024-02-23 14:31:36,198: DEBUG/main] Retrieved datatype module galaxy.datatypes.tabular:Tabular from the datatype registry for extension hexrd.accepted_orientations. +[2024-02-23 14:31:36,198: DEBUG/main] Retrieved datatype module galaxy.datatypes.text:Yaml from the datatype registry for extension hexrd.yml. +[2024-02-23 14:31:36,199: DEBUG/main] Retrieved datatype module galaxy.datatypes.constructive_solid_geometry:NeperTess from the datatype registry for extension neper.tess. +[2024-02-23 14:31:36,199: DEBUG/main] Retrieved datatype module galaxy.datatypes.constructive_solid_geometry:NeperTesr from the datatype registry for extension neper.tesr. +[2024-02-23 14:31:36,199: DEBUG/main] Retrieved datatype module galaxy.datatypes.constructive_solid_geometry:NeperPoints from the datatype registry for extension neper.points. +[2024-02-23 14:31:36,199: DEBUG/main] Retrieved datatype module galaxy.datatypes.constructive_solid_geometry:NeperPointsTabular from the datatype registry for extension neper.points.tsv. +[2024-02-23 14:31:36,199: DEBUG/main] Retrieved datatype module galaxy.datatypes.constructive_solid_geometry:NeperMultiScaleCell from the datatype registry for extension neper.mscell. +[2024-02-23 14:31:36,200: DEBUG/main] Retrieved datatype module galaxy.datatypes.constructive_solid_geometry:GmshMsh from the datatype registry for extension gmsh.msh. +[2024-02-23 14:31:36,200: DEBUG/main] Retrieved datatype module galaxy.datatypes.constructive_solid_geometry:GmshGeo from the datatype registry for extension gmsh.geo. +[2024-02-23 14:31:36,200: DEBUG/main] Retrieved datatype module galaxy.datatypes.constructive_solid_geometry:ZsetGeof from the datatype registry for extension zset.geof. +[2024-02-23 14:31:36,200: DEBUG/main] Retrieved datatype module galaxy.datatypes.binary:Binary from the datatype registry for extension stl. +[2024-02-23 14:31:36,200: DEBUG/main] Overriding conflicting datatype with extension 'stl', using datatype from /scratch/rico/galaxy/lib/galaxy/config/sample/datatypes_conf.xml.sample. +[2024-02-23 14:31:36,201: DEBUG/main] Retrieved datatype module galaxy.datatypes.text:Text from the datatype registry for extension pov. +[2024-02-23 14:31:36,201: DEBUG/main] Retrieved datatype module galaxy.datatypes.text:PithyaResult from the datatype registry for extension pithya.result. +[2024-02-23 14:31:36,201: DEBUG/main] Retrieved datatype module galaxy.datatypes.text:PithyaProperty from the datatype registry for extension pithya.property. +[2024-02-23 14:31:36,201: DEBUG/main] Retrieved datatype module galaxy.datatypes.text:PithyaModel from the datatype registry for extension pithya.model. +[2024-02-23 14:31:36,202: DEBUG/main] Retrieved datatype module galaxy.datatypes.text:BCSLts from the datatype registry for extension bcsl.ts. +[2024-02-23 14:31:36,202: DEBUG/main] Retrieved datatype module galaxy.datatypes.text:BCSLmodel from the datatype registry for extension bcsl.model. +[2024-02-23 14:31:36,202: DEBUG/main] Retrieved datatype module galaxy.datatypes.text:StormSample from the datatype registry for extension storm.sample. +[2024-02-23 14:31:36,202: DEBUG/main] Retrieved datatype module galaxy.datatypes.text:StormCheck from the datatype registry for extension storm.check. +[2024-02-23 14:31:36,202: DEBUG/main] Retrieved datatype module galaxy.datatypes.text:CTLresult from the datatype registry for extension ctl.result. +[2024-02-23 14:31:36,202: DEBUG/main] Retrieved datatype module galaxy.datatypes.text:Castep from the datatype registry for extension castep. +[2024-02-23 14:31:36,202: DEBUG/main] Retrieved datatype module galaxy.datatypes.text:Param from the datatype registry for extension param. +[2024-02-23 14:31:36,202: DEBUG/main] Retrieved datatype module galaxy.datatypes.text:FormattedDensity from the datatype registry for extension den_fmt. +[2024-02-23 14:31:36,203: DEBUG/main] Retrieved datatype module galaxy.datatypes.larch:AthenaProject from the datatype registry for extension prj. +[2024-02-23 14:31:36,203: DEBUG/main] Retrieved datatype module galaxy.datatypes.larch:FEFFInput from the datatype registry for extension inp. +[2024-02-23 14:31:36,203: DEBUG/main] Retrieved datatype module galaxy.datatypes.tabular:CSV from the datatype registry for extension sp. +[2024-02-23 14:31:36,203: DEBUG/main] Retrieved datatype module galaxy.datatypes.tabular:CSV from the datatype registry for extension gds. +[2024-02-23 14:31:36,203: DEBUG/main] Retrieved datatype module galaxy.datatypes.tabular:CSV from the datatype registry for extension feff. +[2024-02-23 14:31:36,203: DEBUG/main] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension feffit. +[2024-02-23 14:31:36,203: DEBUG/main] Retrieved datatype module galaxy.datatypes.binary:Binary from the datatype registry for extension bil. +[2024-02-23 14:31:36,204: DEBUG/main] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension hdr. +[2024-02-23 14:31:36,204: DEBUG/main] Retrieved datatype module galaxy.datatypes.gis:Shapefile from the datatype registry for extension shp. +[2024-02-23 14:31:36,204: DEBUG/main] Retrieved datatype module galaxy.datatypes.binary:FITS from the datatype registry for extension fits. +[2024-02-23 14:31:36,205: DEBUG/main] Retrieved datatype module galaxy.datatypes.chain:Chain from the datatype registry for extension chain. +[2024-02-23 14:31:36,205: DEBUG/main] Loaded sniffer for datatype 'galaxy.datatypes.plant_tribes:PlantTribesKsComponents' +[2024-02-23 14:31:36,205: DEBUG/main] Loaded sniffer for datatype 'galaxy.datatypes.plant_tribes:Smat' +[2024-02-23 14:31:36,205: DEBUG/main] Loaded sniffer for datatype 'galaxy.datatypes.mothur:Sabund' +[2024-02-23 14:31:36,205: DEBUG/main] Loaded sniffer for datatype 'galaxy.datatypes.mothur:Otu' +[2024-02-23 14:31:36,205: DEBUG/main] Loaded sniffer for datatype 'galaxy.datatypes.mothur:GroupAbund' +[2024-02-23 14:31:36,205: DEBUG/main] Loaded sniffer for datatype 'galaxy.datatypes.mothur:SecondaryStructureMap' +[2024-02-23 14:31:36,205: DEBUG/main] Loaded sniffer for datatype 'galaxy.datatypes.mothur:LowerTriangleDistanceMatrix' +[2024-02-23 14:31:36,205: DEBUG/main] Loaded sniffer for datatype 'galaxy.datatypes.mothur:SquareDistanceMatrix' +[2024-02-23 14:31:36,205: DEBUG/main] Loaded sniffer for datatype 'galaxy.datatypes.mothur:PairwiseDistanceMatrix' +[2024-02-23 14:31:36,205: DEBUG/main] Loaded sniffer for datatype 'galaxy.datatypes.mothur:Oligos' +[2024-02-23 14:31:36,205: DEBUG/main] Loaded sniffer for datatype 'galaxy.datatypes.mothur:Quantile' +[2024-02-23 14:31:36,206: DEBUG/main] Loaded sniffer for datatype 'galaxy.datatypes.mothur:Frequency' +[2024-02-23 14:31:36,206: DEBUG/main] Loaded sniffer for datatype 'galaxy.datatypes.mothur:LaneMask' +[2024-02-23 14:31:36,206: DEBUG/main] Loaded sniffer for datatype 'galaxy.datatypes.mothur:RefTaxonomy' +[2024-02-23 14:31:36,206: DEBUG/main] Loaded sniffer for datatype 'galaxy.datatypes.mothur:Axes' +[2024-02-23 14:31:36,206: DEBUG/main] Loaded sniffer for datatype 'galaxy.datatypes.constructive_solid_geometry:PlyAscii' +[2024-02-23 14:31:36,206: DEBUG/main] Loaded sniffer for datatype 'galaxy.datatypes.constructive_solid_geometry:PlyBinary' +[2024-02-23 14:31:36,206: DEBUG/main] Loaded sniffer for datatype 'galaxy.datatypes.constructive_solid_geometry:VtkAscii' +[2024-02-23 14:31:36,206: DEBUG/main] Loaded sniffer for datatype 'galaxy.datatypes.constructive_solid_geometry:VtkBinary' +[2024-02-23 14:31:36,206: DEBUG/main] Loaded sniffer for datatype 'galaxy.datatypes.constructive_solid_geometry:NeperTess' +[2024-02-23 14:31:36,206: DEBUG/main] Loaded sniffer for datatype 'galaxy.datatypes.constructive_solid_geometry:NeperTesr' +[2024-02-23 14:31:36,206: DEBUG/main] Loaded sniffer for datatype 'galaxy.datatypes.constructive_solid_geometry:GmshMsh' +[2024-02-23 14:31:36,206: DEBUG/main] Loaded sniffer for datatype 'galaxy.datatypes.goldenpath:GoldenPath' +[2024-02-23 14:31:36,206: DEBUG/main] Loaded sniffer for datatype 'galaxy.datatypes.interval:ScIdx' +[2024-02-23 14:31:36,206: DEBUG/main] Loaded sniffer for datatype 'galaxy.datatypes.tabular:Vcf' +[2024-02-23 14:31:36,206: DEBUG/main] Loaded sniffer for datatype 'galaxy.datatypes.binary:JP2' +[2024-02-23 14:31:36,206: DEBUG/main] Loaded sniffer for datatype 'galaxy.datatypes.binary:TwoBit' +[2024-02-23 14:31:36,206: DEBUG/main] Loaded sniffer for datatype 'galaxy.datatypes.binary:GeminiSQLite' +[2024-02-23 14:31:36,206: DEBUG/main] Loaded sniffer for datatype 'galaxy.datatypes.binary:SQmass' +[2024-02-23 14:31:36,206: DEBUG/main] Loaded sniffer for datatype 'galaxy.datatypes.binary:MzSQlite' +[2024-02-23 14:31:36,206: DEBUG/main] Loaded sniffer for datatype 'galaxy.datatypes.binary:OSW' +[2024-02-23 14:31:36,207: DEBUG/main] Loaded sniffer for datatype 'galaxy.datatypes.binary:PQP' +[2024-02-23 14:31:36,207: DEBUG/main] Loaded sniffer for datatype 'galaxy.datatypes.binary:IdpDB' +[2024-02-23 14:31:36,207: DEBUG/main] Loaded sniffer for datatype 'galaxy.datatypes.binary:ElibSQlite' +[2024-02-23 14:31:36,207: DEBUG/main] Loaded sniffer for datatype 'galaxy.datatypes.binary:DlibSQlite' +[2024-02-23 14:31:36,207: DEBUG/main] Loaded sniffer for datatype 'galaxy.datatypes.binary:BlibSQlite' +[2024-02-23 14:31:36,207: DEBUG/main] Loaded sniffer for datatype 'galaxy.datatypes.binary:ChiraSQLite' +[2024-02-23 14:31:36,207: DEBUG/main] Loaded sniffer for datatype 'galaxy.datatypes.binary:CuffDiffSQlite' +[2024-02-23 14:31:36,207: DEBUG/main] Loaded sniffer for datatype 'galaxy.datatypes.binary:GAFASQLite' +[2024-02-23 14:31:36,207: DEBUG/main] Loaded sniffer for datatype 'galaxy.datatypes.binary:NcbiTaxonomySQlite' +[2024-02-23 14:31:36,207: DEBUG/main] Loaded sniffer for datatype 'galaxy.datatypes.binary:SQlite' +[2024-02-23 14:31:36,207: DEBUG/main] Loaded sniffer for datatype 'galaxy.datatypes.binary:H5MLM' +[2024-02-23 14:31:36,207: DEBUG/main] Loaded sniffer for datatype 'galaxy.datatypes.binary:Cool' +[2024-02-23 14:31:36,207: DEBUG/main] Loaded sniffer for datatype 'galaxy.datatypes.binary:MCool' +[2024-02-23 14:31:36,207: DEBUG/main] Loaded sniffer for datatype 'galaxy.datatypes.binary:Loom' +[2024-02-23 14:31:36,207: DEBUG/main] Loaded sniffer for datatype 'galaxy.datatypes.binary:Anndata' +[2024-02-23 14:31:36,207: DEBUG/main] Loaded sniffer for datatype 'galaxy.datatypes.binary:Biom2' +[2024-02-23 14:31:36,207: DEBUG/main] Loaded sniffer for datatype 'galaxy.datatypes.binary:HexrdMaterials' +[2024-02-23 14:31:36,207: DEBUG/main] Loaded sniffer for datatype 'galaxy.datatypes.binary:H5' +[2024-02-23 14:31:36,207: DEBUG/main] Loaded sniffer for datatype 'galaxy.datatypes.binary:Grib' +[2024-02-23 14:31:36,207: DEBUG/main] Loaded sniffer for datatype 'galaxy.datatypes.binary:HexrdImagesNpz' +[2024-02-23 14:31:36,207: DEBUG/main] Loaded sniffer for datatype 'galaxy.datatypes.binary:HexrdEtaOmeNpz' +[2024-02-23 14:31:36,208: DEBUG/main] Loaded sniffer for datatype 'galaxy.datatypes.binary:Npz' +[2024-02-23 14:31:36,208: DEBUG/main] Loaded sniffer for datatype 'galaxy.datatypes.binary:Bam' +[2024-02-23 14:31:36,208: DEBUG/main] Loaded sniffer for datatype 'galaxy.datatypes.binary:BamQuerynameSorted' +[2024-02-23 14:31:36,208: DEBUG/main] Loaded sniffer for datatype 'galaxy.datatypes.binary:BamNative' +[2024-02-23 14:31:36,208: DEBUG/main] Loaded sniffer for datatype 'galaxy.datatypes.binary:CRAM' +[2024-02-23 14:31:36,208: DEBUG/main] Loaded sniffer for datatype 'galaxy.datatypes.binary:Sff' +[2024-02-23 14:31:36,208: DEBUG/main] Loaded sniffer for datatype 'galaxy.datatypes.binary:Sra' +[2024-02-23 14:31:36,208: DEBUG/main] Loaded sniffer for datatype 'galaxy.datatypes.binary:NetCDF' +[2024-02-23 14:31:36,208: DEBUG/main] Loaded sniffer for datatype 'galaxy.datatypes.binary:DAA' +[2024-02-23 14:31:36,208: DEBUG/main] Loaded sniffer for datatype 'galaxy.datatypes.binary:RMA6' +[2024-02-23 14:31:36,208: DEBUG/main] Loaded sniffer for datatype 'galaxy.datatypes.binary:DMND' +[2024-02-23 14:31:36,208: DEBUG/main] Loaded sniffer for datatype 'galaxy.datatypes.binary:Parquet' +[2024-02-23 14:31:36,208: DEBUG/main] Loaded sniffer for datatype 'galaxy.datatypes.binary:BafTar' +[2024-02-23 14:31:36,208: DEBUG/main] Loaded sniffer for datatype 'galaxy.datatypes.binary:TdfTar' +[2024-02-23 14:31:36,208: DEBUG/main] Loaded sniffer for datatype 'galaxy.datatypes.binary:MassHunterTar' +[2024-02-23 14:31:36,208: DEBUG/main] Loaded sniffer for datatype 'galaxy.datatypes.binary:MassLynxTar' +[2024-02-23 14:31:36,208: DEBUG/main] Loaded sniffer for datatype 'galaxy.datatypes.binary:YepTar' +[2024-02-23 14:31:36,208: DEBUG/main] Loaded sniffer for datatype 'galaxy.datatypes.binary:WiffTar' +[2024-02-23 14:31:36,208: DEBUG/main] Loaded sniffer for datatype 'galaxy.datatypes.binary:Fast5ArchiveGz' +[2024-02-23 14:31:36,208: DEBUG/main] Loaded sniffer for datatype 'galaxy.datatypes.binary:Fast5ArchiveBz2' +[2024-02-23 14:31:36,208: DEBUG/main] Loaded sniffer for datatype 'galaxy.datatypes.binary:Fast5Archive' +[2024-02-23 14:31:36,209: DEBUG/main] Loaded sniffer for datatype 'galaxy.datatypes.binary:Meryldb' +[2024-02-23 14:31:36,209: DEBUG/main] Loaded sniffer for datatype 'galaxy.datatypes.binary:Bref3' +[2024-02-23 14:31:36,209: DEBUG/main] Loaded sniffer for datatype 'galaxy.datatypes.binary:PostgresqlArchive' +[2024-02-23 14:31:36,209: DEBUG/main] Loaded sniffer for datatype 'galaxy.datatypes.binary:ICM' +[2024-02-23 14:31:36,209: DEBUG/main] Loaded sniffer for datatype 'galaxy.datatypes.binary:Idat' +[2024-02-23 14:31:36,209: DEBUG/main] Loaded sniffer for datatype 'galaxy.datatypes.binary:Trr' +[2024-02-23 14:31:36,209: DEBUG/main] Loaded sniffer for datatype 'galaxy.datatypes.binary:Dcd' +[2024-02-23 14:31:36,209: DEBUG/main] Loaded sniffer for datatype 'galaxy.datatypes.binary:Xtc' +[2024-02-23 14:31:36,209: DEBUG/main] Loaded sniffer for datatype 'galaxy.datatypes.binary:Cpt' +[2024-02-23 14:31:36,209: DEBUG/main] Loaded sniffer for datatype 'galaxy.datatypes.binary:Edr' +[2024-02-23 14:31:36,209: DEBUG/main] Loaded sniffer for datatype 'galaxy.datatypes.binary:Vel' +[2024-02-23 14:31:36,209: DEBUG/main] Loaded sniffer for datatype 'galaxy.datatypes.binary:Xlsx' +[2024-02-23 14:31:36,209: DEBUG/main] Loaded sniffer for datatype 'galaxy.datatypes.qiime2:QIIME2Metadata' +[2024-02-23 14:31:36,209: DEBUG/main] Loaded sniffer for datatype 'galaxy.datatypes.qiime2:QIIME2Artifact' +[2024-02-23 14:31:36,209: DEBUG/main] Loaded sniffer for datatype 'galaxy.datatypes.qiime2:QIIME2Visualization' +[2024-02-23 14:31:36,209: DEBUG/main] Loaded sniffer for datatype 'galaxy.datatypes.binary:CompressedZipArchive' +[2024-02-23 14:31:36,209: DEBUG/main] Loaded sniffer for datatype 'galaxy.datatypes.binary:Pretext' +[2024-02-23 14:31:36,210: DEBUG/main] Loaded sniffer for datatype 'galaxy.datatypes.annotation:Augustus' +[2024-02-23 14:31:36,210: DEBUG/main] Loaded sniffer for datatype 'galaxy.datatypes.xml:Owl' +[2024-02-23 14:31:36,210: DEBUG/main] Loaded sniffer for datatype 'galaxy.datatypes.chain:Chain' +[2024-02-23 14:31:36,210: DEBUG/main] Loaded sniffer for datatype 'galaxy.datatypes.triples:Rdf' +[2024-02-23 14:31:36,210: DEBUG/main] Loaded sniffer for datatype 'galaxy.datatypes.blast:BlastXml' +[2024-02-23 14:31:36,210: DEBUG/main] Loaded sniffer for datatype 'galaxy.datatypes.images:Gifti' +[2024-02-23 14:31:36,210: DEBUG/main] Loaded sniffer for datatype 'galaxy.datatypes.xml:Phyloxml' +[2024-02-23 14:31:36,210: DEBUG/main] Loaded sniffer for datatype 'galaxy.datatypes.xml:Dzi' +[2024-02-23 14:31:36,210: DEBUG/main] Loaded sniffer for datatype 'galaxy.datatypes.xml:Sbml' +[2024-02-23 14:31:36,210: DEBUG/main] Loaded sniffer for datatype 'galaxy.datatypes.proteomics:Dta2d' +[2024-02-23 14:31:36,210: DEBUG/main] Loaded sniffer for datatype 'galaxy.datatypes.proteomics:Edta' +[2024-02-23 14:31:36,210: DEBUG/main] Loaded sniffer for datatype 'galaxy.datatypes.proteomics:ConsensusXML' +[2024-02-23 14:31:36,210: DEBUG/main] Loaded sniffer for datatype 'galaxy.datatypes.proteomics:IdXML' +[2024-02-23 14:31:36,210: DEBUG/main] Loaded sniffer for datatype 'galaxy.datatypes.proteomics:FeatureXML' +[2024-02-23 14:31:36,210: DEBUG/main] Loaded sniffer for datatype 'galaxy.datatypes.proteomics:MascotXML' +[2024-02-23 14:31:36,210: DEBUG/main] Loaded sniffer for datatype 'galaxy.datatypes.proteomics:Mgf' +[2024-02-23 14:31:36,210: DEBUG/main] Loaded sniffer for datatype 'galaxy.datatypes.proteomics:Ms2' +[2024-02-23 14:31:36,210: DEBUG/main] Loaded sniffer for datatype 'galaxy.datatypes.proteomics:Msp' +[2024-02-23 14:31:36,211: DEBUG/main] Loaded sniffer for datatype 'galaxy.datatypes.proteomics:MzData' +[2024-02-23 14:31:36,211: DEBUG/main] Loaded sniffer for datatype 'galaxy.datatypes.proteomics:MzIdentML' +[2024-02-23 14:31:36,211: DEBUG/main] Loaded sniffer for datatype 'galaxy.datatypes.proteomics:MzML' +[2024-02-23 14:31:36,211: DEBUG/main] Loaded sniffer for datatype 'galaxy.datatypes.proteomics:MzQuantML' +[2024-02-23 14:31:36,211: DEBUG/main] Loaded sniffer for datatype 'galaxy.datatypes.proteomics:MzTab' +[2024-02-23 14:31:36,211: DEBUG/main] Loaded sniffer for datatype 'galaxy.datatypes.proteomics:MzTab2' +[2024-02-23 14:31:36,211: DEBUG/main] Loaded sniffer for datatype 'galaxy.datatypes.proteomics:ParamXml' +[2024-02-23 14:31:36,211: DEBUG/main] Loaded sniffer for datatype 'galaxy.datatypes.proteomics:MzXML' +[2024-02-23 14:31:36,211: DEBUG/main] Loaded sniffer for datatype 'galaxy.datatypes.proteomics:NmrML' +[2024-02-23 14:31:36,211: DEBUG/main] Loaded sniffer for datatype 'galaxy.datatypes.proteomics:Kroenik' +[2024-02-23 14:31:36,211: DEBUG/main] Loaded sniffer for datatype 'galaxy.datatypes.proteomics:PepList' +[2024-02-23 14:31:36,211: DEBUG/main] Loaded sniffer for datatype 'galaxy.datatypes.proteomics:PSMS' +[2024-02-23 14:31:36,211: DEBUG/main] Loaded sniffer for datatype 'galaxy.datatypes.proteomics:PepXml' +[2024-02-23 14:31:36,211: DEBUG/main] Loaded sniffer for datatype 'galaxy.datatypes.proteomics:ProtXML' +[2024-02-23 14:31:36,211: DEBUG/main] Loaded sniffer for datatype 'galaxy.datatypes.proteomics:SPLib' +[2024-02-23 14:31:36,211: DEBUG/main] Loaded sniffer for datatype 'galaxy.datatypes.proteomics:TandemXML' +[2024-02-23 14:31:36,211: DEBUG/main] Loaded sniffer for datatype 'galaxy.datatypes.proteomics:ThermoRAW' +[2024-02-23 14:31:36,212: DEBUG/main] Loaded sniffer for datatype 'galaxy.datatypes.proteomics:TraML' +[2024-02-23 14:31:36,212: DEBUG/main] Loaded sniffer for datatype 'galaxy.datatypes.proteomics:TrafoXML' +[2024-02-23 14:31:36,212: DEBUG/main] Loaded sniffer for datatype 'galaxy.datatypes.proteomics:UniProtXML' +[2024-02-23 14:31:36,212: DEBUG/main] Loaded sniffer for datatype 'galaxy.datatypes.proteomics:XquestXML' +[2024-02-23 14:31:36,212: DEBUG/main] Loaded sniffer for datatype 'galaxy.datatypes.proteomics:XquestSpecXML' +[2024-02-23 14:31:36,212: DEBUG/main] Loaded sniffer for datatype 'galaxy.datatypes.proteomics:QCML' +[2024-02-23 14:31:36,212: DEBUG/main] Loaded sniffer for datatype 'galaxy.datatypes.proteomics:Wiff' +[2024-02-23 14:31:36,212: DEBUG/main] Loaded sniffer for datatype 'galaxy.datatypes.proteomics:PEFF' +[2024-02-23 14:31:36,212: DEBUG/main] Loaded sniffer for datatype 'galaxy.datatypes.molecules:CML' +[2024-02-23 14:31:36,212: DEBUG/main] Loaded sniffer for datatype 'galaxy.datatypes.xml:GenericXml' +[2024-02-23 14:31:36,212: DEBUG/main] Loaded sniffer for datatype 'galaxy.datatypes.triples:HDT' +[2024-02-23 14:31:36,212: DEBUG/main] Loaded sniffer for datatype 'galaxy.datatypes.triples:Turtle' +[2024-02-23 14:31:36,212: DEBUG/main] Loaded sniffer for datatype 'galaxy.datatypes.triples:NTriples' +[2024-02-23 14:31:36,212: DEBUG/main] Loaded sniffer for datatype 'galaxy.datatypes.triples:Jsonld' +[2024-02-23 14:31:36,212: DEBUG/main] Loaded sniffer for datatype 'galaxy.datatypes.sequence:Maf' +[2024-02-23 14:31:36,212: DEBUG/main] Loaded sniffer for datatype 'galaxy.datatypes.sequence:Lav' +[2024-02-23 14:31:36,212: DEBUG/main] Loaded sniffer for datatype 'galaxy.datatypes.sequence:MemePsp' +[2024-02-23 14:31:36,212: DEBUG/main] Loaded sniffer for datatype 'galaxy.datatypes.sequence:Fastg' +[2024-02-23 14:31:36,213: DEBUG/main] Loaded sniffer for datatype 'galaxy.datatypes.sequence:csFasta' +[2024-02-23 14:31:36,213: DEBUG/main] Loaded sniffer for datatype 'galaxy.datatypes.qualityscore:QualityScoreSOLiD' +[2024-02-23 14:31:36,213: DEBUG/main] Loaded sniffer for datatype 'galaxy.datatypes.qualityscore:QualityScore454' +[2024-02-23 14:31:36,213: DEBUG/main] Loaded sniffer for datatype 'galaxy.datatypes.molecules:SDF' +[2024-02-23 14:31:36,213: DEBUG/main] Loaded sniffer for datatype 'galaxy.datatypes.molecules:PDB' +[2024-02-23 14:31:36,213: DEBUG/main] Loaded sniffer for datatype 'galaxy.datatypes.molecules:Cell' +[2024-02-23 14:31:36,213: DEBUG/main] Loaded sniffer for datatype 'galaxy.datatypes.molecules:CIF' +[2024-02-23 14:31:36,213: DEBUG/main] Loaded sniffer for datatype 'galaxy.datatypes.molecules:ExtendedXYZ' +[2024-02-23 14:31:36,213: DEBUG/main] Loaded sniffer for datatype 'galaxy.datatypes.molecules:XYZ' +[2024-02-23 14:31:36,213: DEBUG/main] Loaded sniffer for datatype 'galaxy.datatypes.molecules:MOL2' +[2024-02-23 14:31:36,213: DEBUG/main] Loaded sniffer for datatype 'galaxy.datatypes.molecules:InChI' +[2024-02-23 14:31:36,213: DEBUG/main] Loaded sniffer for datatype 'galaxy.datatypes.molecules:FPS' +[2024-02-23 14:31:36,213: DEBUG/main] Loaded sniffer for datatype 'galaxy.datatypes.molecules:PQR' +[2024-02-23 14:31:36,213: DEBUG/main] Loaded sniffer for datatype 'galaxy.datatypes.molecules:GRO' +[2024-02-23 14:31:36,213: DEBUG/main] Loaded sniffer for datatype 'galaxy.datatypes.phylip:Phylip' +[2024-02-23 14:31:36,213: DEBUG/main] Loaded sniffer for datatype 'galaxy.datatypes.sequence:Fasta' +[2024-02-23 14:31:36,214: DEBUG/main] Loaded sniffer for datatype 'galaxy.datatypes.sequence:FastqCSSanger' +[2024-02-23 14:31:36,214: DEBUG/main] Loaded sniffer for datatype 'galaxy.datatypes.sequence:FastqSanger' +[2024-02-23 14:31:36,214: DEBUG/main] Loaded sniffer for datatype 'galaxy.datatypes.sequence:Fastq' +[2024-02-23 14:31:36,214: DEBUG/main] Loaded sniffer for datatype 'galaxy.datatypes.interval:Wiggle' +[2024-02-23 14:31:36,214: DEBUG/main] Loaded sniffer for datatype 'galaxy.datatypes.text:Html' +[2024-02-23 14:31:36,214: DEBUG/main] Loaded sniffer for datatype 'galaxy.datatypes.images:Pdf' +[2024-02-23 14:31:36,214: DEBUG/main] Loaded sniffer for datatype 'galaxy.datatypes.sequence:Axt' +[2024-02-23 14:31:36,214: DEBUG/main] Loaded sniffer for datatype 'galaxy.datatypes.sequence:Genbank' +[2024-02-23 14:31:36,214: DEBUG/main] Loaded sniffer for datatype 'galaxy.datatypes.interval:Bed' +[2024-02-23 14:31:36,214: DEBUG/main] Loaded sniffer for datatype 'galaxy.datatypes.interval:CustomTrack' +[2024-02-23 14:31:36,214: DEBUG/main] Loaded sniffer for datatype 'galaxy.datatypes.interval:Gtf' +[2024-02-23 14:31:36,214: DEBUG/main] Loaded sniffer for datatype 'galaxy.datatypes.interval:Gff' +[2024-02-23 14:31:36,214: DEBUG/main] Loaded sniffer for datatype 'galaxy.datatypes.interval:Gff3' +[2024-02-23 14:31:36,214: DEBUG/main] Loaded sniffer for datatype 'galaxy.datatypes.tabular:Pileup' +[2024-02-23 14:31:36,215: DEBUG/main] Loaded sniffer for datatype 'galaxy.datatypes.tabular:Psl' +[2024-02-23 14:31:36,215: DEBUG/main] Loaded sniffer for datatype 'galaxy.datatypes.text:Paf' +[2024-02-23 14:31:36,215: DEBUG/main] Loaded sniffer for datatype 'galaxy.datatypes.interval:Interval' +[2024-02-23 14:31:36,215: DEBUG/main] Loaded sniffer for datatype 'galaxy.datatypes.tabular:Sam' +[2024-02-23 14:31:36,215: DEBUG/main] Loaded sniffer for datatype 'galaxy.datatypes.data:Newick' +[2024-02-23 14:31:36,215: DEBUG/main] Loaded sniffer for datatype 'galaxy.datatypes.data:Nexus' +[2024-02-23 14:31:36,215: DEBUG/main] Loaded sniffer for datatype 'galaxy.datatypes.text:IQTree' +[2024-02-23 14:31:36,215: DEBUG/main] Loaded sniffer for datatype 'galaxy.datatypes.text:Obo' +[2024-02-23 14:31:36,215: DEBUG/main] Loaded sniffer for datatype 'galaxy.datatypes.text:Arff' +[2024-02-23 14:31:36,215: DEBUG/main] Loaded sniffer for datatype 'galaxy.datatypes.text:Ipynb' +[2024-02-23 14:31:36,215: DEBUG/main] Loaded sniffer for datatype 'galaxy.datatypes.text:Biom1' +[2024-02-23 14:31:36,215: DEBUG/main] Loaded sniffer for datatype 'galaxy.datatypes.text:ImgtJson' +[2024-02-23 14:31:36,215: DEBUG/main] Loaded sniffer for datatype 'galaxy.datatypes.text:GeoJson' +[2024-02-23 14:31:36,215: DEBUG/main] Loaded sniffer for datatype 'galaxy.datatypes.text:PithyaResult' +[2024-02-23 14:31:36,216: DEBUG/main] Loaded sniffer for datatype 'galaxy.datatypes.text:BCSLts' +[2024-02-23 14:31:36,216: DEBUG/main] Loaded sniffer for datatype 'galaxy.datatypes.text:Json' +[2024-02-23 14:31:36,216: DEBUG/main] Loaded sniffer for datatype 'galaxy.datatypes.genetics:GenotypeMatrix' +[2024-02-23 14:31:36,216: DEBUG/main] Loaded sniffer for datatype 'galaxy.datatypes.genetics:DataIn' +[2024-02-23 14:31:36,216: DEBUG/main] Loaded sniffer for datatype 'galaxy.datatypes.genetics:MarkerMap' +[2024-02-23 14:31:36,216: DEBUG/main] Loaded sniffer for datatype 'galaxy.datatypes.genetics:AllegroLOD' +[2024-02-23 14:31:36,216: DEBUG/main] Loaded sniffer for datatype 'galaxy.datatypes.sequence:RNADotPlotMatrix' +[2024-02-23 14:31:36,216: DEBUG/main] Loaded sniffer for datatype 'galaxy.datatypes.sequence:DotBracket' +[2024-02-23 14:31:36,216: DEBUG/main] Loaded sniffer for datatype 'galaxy.datatypes.tabular:CMAP' +[2024-02-23 14:31:36,216: DEBUG/main] Loaded sniffer for datatype 'galaxy.datatypes.tabular:ConnectivityTable' +[2024-02-23 14:31:36,216: DEBUG/main] Loaded sniffer for datatype 'galaxy.datatypes.tabular:CSV' +[2024-02-23 14:31:36,216: DEBUG/main] Loaded sniffer for datatype 'galaxy.datatypes.metacyto:mSummary' +[2024-02-23 14:31:36,216: DEBUG/main] Loaded sniffer for datatype 'galaxy.datatypes.metacyto:mStats' +[2024-02-23 14:31:36,216: DEBUG/main] Loaded sniffer for datatype 'galaxy.datatypes.tabular:TSV' +[2024-02-23 14:31:36,216: DEBUG/main] Loaded sniffer for datatype 'galaxy.datatypes.tabular:MatrixMarket' +[2024-02-23 14:31:36,217: DEBUG/main] Loaded sniffer for datatype 'galaxy.datatypes.msa:Hmmer2' +[2024-02-23 14:31:36,217: DEBUG/main] Loaded sniffer for datatype 'galaxy.datatypes.msa:Hmmer3' +[2024-02-23 14:31:36,217: DEBUG/main] Loaded sniffer for datatype 'galaxy.datatypes.msa:Stockholm_1_0' +[2024-02-23 14:31:36,217: DEBUG/main] Loaded sniffer for datatype 'galaxy.datatypes.msa:MauveXmfa' +[2024-02-23 14:31:36,217: DEBUG/main] Loaded sniffer for datatype 'galaxy.datatypes.msa:InfernalCM' +[2024-02-23 14:31:36,217: DEBUG/main] Loaded sniffer for datatype 'galaxy.datatypes.annotation:SnapHmm' +[2024-02-23 14:31:36,217: DEBUG/main] Loaded sniffer for datatype 'galaxy.datatypes.microarrays:Cel' +[2024-02-23 14:31:36,217: DEBUG/main] Loaded sniffer for datatype 'galaxy.datatypes.microarrays:Gpr' +[2024-02-23 14:31:36,217: DEBUG/main] Loaded sniffer for datatype 'galaxy.datatypes.microarrays:Gal' +[2024-02-23 14:31:36,217: DEBUG/main] Loaded sniffer for datatype 'galaxy.datatypes.binary:RData' +[2024-02-23 14:31:36,217: DEBUG/main] Loaded sniffer for datatype 'galaxy.datatypes.binary:RDS' +[2024-02-23 14:31:36,217: DEBUG/main] Loaded sniffer for datatype 'galaxy.datatypes.images:Mrc2014' +[2024-02-23 14:31:36,217: DEBUG/main] Loaded sniffer for datatype 'galaxy.datatypes.images:Jpg' +[2024-02-23 14:31:36,217: DEBUG/main] Loaded sniffer for datatype 'galaxy.datatypes.images:Png' +[2024-02-23 14:31:36,218: DEBUG/main] Loaded sniffer for datatype 'galaxy.datatypes.images:OMETiff' +[2024-02-23 14:31:36,218: DEBUG/main] Loaded sniffer for datatype 'galaxy.datatypes.images:Tiff' +[2024-02-23 14:31:36,218: DEBUG/main] Loaded sniffer for datatype 'galaxy.datatypes.images:Bmp' +[2024-02-23 14:31:36,218: DEBUG/main] Loaded sniffer for datatype 'galaxy.datatypes.images:Gif' +[2024-02-23 14:31:36,218: DEBUG/main] Loaded sniffer for datatype 'galaxy.datatypes.images:Im' +[2024-02-23 14:31:36,218: DEBUG/main] Loaded sniffer for datatype 'galaxy.datatypes.images:Pcd' +[2024-02-23 14:31:36,218: DEBUG/main] Loaded sniffer for datatype 'galaxy.datatypes.images:Pcx' +[2024-02-23 14:31:36,218: DEBUG/main] Loaded sniffer for datatype 'galaxy.datatypes.images:Ppm' +[2024-02-23 14:31:36,218: DEBUG/main] Loaded sniffer for datatype 'galaxy.datatypes.images:Psd' +[2024-02-23 14:31:36,218: DEBUG/main] Loaded sniffer for datatype 'galaxy.datatypes.images:Xbm' +[2024-02-23 14:31:36,218: DEBUG/main] Loaded sniffer for datatype 'galaxy.datatypes.images:Rgb' +[2024-02-23 14:31:36,218: DEBUG/main] Loaded sniffer for datatype 'galaxy.datatypes.images:Pbm' +[2024-02-23 14:31:36,218: DEBUG/main] Loaded sniffer for datatype 'galaxy.datatypes.images:Pgm' +[2024-02-23 14:31:36,218: DEBUG/main] Loaded sniffer for datatype 'galaxy.datatypes.images:Xpm' +[2024-02-23 14:31:36,219: DEBUG/main] Loaded sniffer for datatype 'galaxy.datatypes.images:Eps' +[2024-02-23 14:31:36,219: DEBUG/main] Loaded sniffer for datatype 'galaxy.datatypes.images:Rast' +[2024-02-23 14:31:36,219: DEBUG/main] Loaded sniffer for datatype 'galaxy.datatypes.images:Tck' +[2024-02-23 14:31:36,219: DEBUG/main] Loaded sniffer for datatype 'galaxy.datatypes.images:Trk' +[2024-02-23 14:31:36,219: DEBUG/main] Loaded sniffer for datatype 'galaxy.datatypes.images:Nifti1' +[2024-02-23 14:31:36,219: DEBUG/main] Loaded sniffer for datatype 'galaxy.datatypes.images:Nifti2' +[2024-02-23 14:31:36,219: DEBUG/main] Loaded sniffer for datatype 'galaxy.datatypes.images:Star' +[2024-02-23 14:31:36,219: DEBUG/main] Loaded sniffer for datatype 'galaxy.datatypes.media:Wav' +[2024-02-23 14:31:36,219: DEBUG/main] Loaded sniffer for datatype 'galaxy.datatypes.media:Mkv' +[2024-02-23 14:31:36,219: DEBUG/main] Loaded sniffer for datatype 'galaxy.datatypes.media:Mp3' +[2024-02-23 14:31:36,219: DEBUG/main] Loaded sniffer for datatype 'galaxy.datatypes.media:Mp4' +[2024-02-23 14:31:36,219: DEBUG/main] Loaded sniffer for datatype 'galaxy.datatypes.media:Flv' +[2024-02-23 14:31:36,219: DEBUG/main] Loaded sniffer for datatype 'galaxy.datatypes.media:Mpg' +[2024-02-23 14:31:36,219: DEBUG/main] Loaded sniffer for datatype 'galaxy.datatypes.speech:TextGrid' +[2024-02-23 14:31:36,220: DEBUG/main] Loaded sniffer for datatype 'galaxy.datatypes.speech:BPF' +[2024-02-23 14:31:36,220: DEBUG/main] Loaded sniffer for datatype 'galaxy.datatypes.larch:FEFFInput' +[2024-02-23 14:31:36,220: DEBUG/main] Loaded sniffer for datatype 'galaxy.datatypes.larch:AthenaProject' +[2024-02-23 14:31:36,220: DEBUG/main] Loaded sniffer for datatype 'galaxy.datatypes.text:Castep' +[2024-02-23 14:31:36,220: DEBUG/main] Loaded sniffer for datatype 'galaxy.datatypes.text:CTLresult' +[2024-02-23 14:31:36,220: DEBUG/main] Loaded sniffer for datatype 'galaxy.datatypes.text:FormattedDensity' +[2024-02-23 14:31:36,220: DEBUG/main] Loaded sniffer for datatype 'galaxy.datatypes.text:Param' +[2024-02-23 14:31:36,220: DEBUG/main] Loaded sniffer for datatype 'galaxy.datatypes.text:Yaml' +[2024-02-23 14:31:36,220: DEBUG/main] Loaded sniffer for datatype 'galaxy.datatypes.binary:OxliCountGraph' +[2024-02-23 14:31:36,220: DEBUG/main] Loaded sniffer for datatype 'galaxy.datatypes.binary:OxliNodeGraph' +[2024-02-23 14:31:36,220: DEBUG/main] Loaded sniffer for datatype 'galaxy.datatypes.binary:OxliTagSet' +[2024-02-23 14:31:36,220: DEBUG/main] Loaded sniffer for datatype 'galaxy.datatypes.binary:OxliStopTags' +[2024-02-23 14:31:36,220: DEBUG/main] Loaded sniffer for datatype 'galaxy.datatypes.binary:OxliSubset' +[2024-02-23 14:31:36,220: DEBUG/main] Loaded sniffer for datatype 'galaxy.datatypes.binary:OxliGraphLabels' +[2024-02-23 14:31:36,221: DEBUG/main] Loaded sniffer for datatype 'galaxy.datatypes.binary:FITS' +[2024-02-23 14:31:36,221: DEBUG/main] Loaded sniffer for datatype 'galaxy.datatypes.neo4j:Neo4jDBzip' +[2024-02-23 14:31:36,221: DEBUG/main] Loaded sniffer for datatype 'galaxy.datatypes.text:PithyaProperty' +[2024-02-23 14:31:36,221: DEBUG/main] Loaded sniffer for datatype 'galaxy.datatypes.text:PithyaModel' +[2024-02-23 14:31:36,221: DEBUG/main] Loaded sniffer for datatype 'galaxy.datatypes.text:BCSLmodel' +[2024-02-23 14:31:36,221: DEBUG/main] Loaded sniffer for datatype 'galaxy.datatypes.text:StormSample' +[2024-02-23 14:31:36,221: DEBUG/main] Loaded sniffer for datatype 'galaxy.datatypes.text:StormCheck' +[2024-02-23 14:31:36,228: DEBUG/main] Build site file [tool-data/shared/ucsc/ucsc_build_sites.txt] not found using sample [tool-data/shared/ucsc/ucsc_build_sites.txt.sample]. +[2024-02-23 14:31:36,228: DEBUG/main] Loaded build site 'ucsc': tool-data/shared/ucsc/ucsc_build_sites.txt.sample with display sites: ['main', 'test', 'archaea', 'ucla'] +[2024-02-23 14:31:36,230: DEBUG/main] Loaded build site 'gbrowse': tool-data/shared/gbrowse/gbrowse_build_sites.txt with display sites: ['modencode', 'sgd_yeast', 'tair', 'wormbase', 'wormbase_ws120', 'wormbase_ws140', 'wormbase_ws170', 'wormbase_ws180', 'wormbase_ws190', 'wormbase_ws200', 'wormbase_ws204', 'wormbase_ws210', 'wormbase_ws220', 'wormbase_ws225'] +[2024-02-23 14:31:36,230: DEBUG/main] Loaded build site 'ensembl': tool-data/shared/ensembl/ensembl_sites.txt +[2024-02-23 14:31:36,231: DEBUG/main] Loaded build site 'ensembl_data_url': tool-data/shared/ensembl/ensembl_sites_data_URL.txt +[2024-02-23 14:31:36,231: DEBUG/main] Build site file [tool-data/shared/igv/igv_build_sites.txt] not found using sample [tool-data/shared/igv/igv_build_sites.txt.sample]. +[2024-02-23 14:31:36,231: DEBUG/main] Loaded build site 'igv': tool-data/shared/igv/igv_build_sites.txt.sample +[2024-02-23 14:31:36,231: DEBUG/main] Build site file [tool-data/shared/rviewer/rviewer_build_sites.txt] not found using sample [tool-data/shared/rviewer/rviewer_build_sites.txt.sample]. +[2024-02-23 14:31:36,231: DEBUG/main] Loaded build site 'rviewer': tool-data/shared/rviewer/rviewer_build_sites.txt.sample +[2024-02-23 14:31:36,235: DEBUG/main] Loading references to tool sheds from /tmp/tmpqrlh6ih1/tool_sheds_conf.xml +[2024-02-23 14:31:36,235: DEBUG/main] Loaded reference to tool shed: Target Shed +[2024-02-23 14:31:36,236: INFO/main] Successfully executed Celery task clean_object_store_caches to prune object store cache directories clean_object_store_caches to prune object store cache directories (0.416 ms) +[2024-02-23 14:31:36,258: INFO/main] Task galaxy.clean_object_store_caches[0cd32a96-9d0e-4f4d-9772-212740dc8b8c] succeeded in 1.1198743890272453s: None + +==> /tmp/tmpqrlh6ih1/gravity/log/gunicorn.log <== +uvicorn.access INFO 2024-02-23 14:31:39,245 [pN:main.1,p:78709,tN:MainThread] 127.0.0.1:59058 - "GET /history/current_history_json?since=2024-02-23T19:31:05.000216 HTTP/1.1" 200 +uvicorn.access INFO 2024-02-23 14:31:39,246 [pN:main.1,p:78709,tN:MainThread] 127.0.0.1:59042 - "GET /api/entry_points?running=true HTTP/1.1" 200 +uvicorn.access INFO 2024-02-23 14:31:41,884 [pN:main.1,p:78709,tN:MainThread] 127.0.0.1:59064 - "GET /history/current_history_json?since=2024-02-23T19:31:05.000216 HTTP/1.1" 200 +uvicorn.access INFO 2024-02-23 14:31:44,914 [pN:main.1,p:78709,tN:MainThread] 127.0.0.1:59080 - "GET /history/current_history_json?since=2024-02-23T19:31:05.000216 HTTP/1.1" 200 +uvicorn.access INFO 2024-02-23 14:31:47,947 [pN:main.1,p:78709,tN:MainThread] 127.0.0.1:58360 - "GET /history/current_history_json?since=2024-02-23T19:31:05.000216 HTTP/1.1" 200 +uvicorn.access INFO 2024-02-23 14:31:49,232 [pN:main.1,p:78709,tN:MainThread] 127.0.0.1:58360 - "GET /api/entry_points?running=true HTTP/1.1" 200 +uvicorn.access INFO 2024-02-23 14:31:50,978 [pN:main.1,p:78709,tN:MainThread] 127.0.0.1:58360 - "GET /history/current_history_json?since=2024-02-23T19:31:05.000216 HTTP/1.1" 200 +uvicorn.access INFO 2024-02-23 14:31:54,007 [pN:main.1,p:78709,tN:MainThread] 127.0.0.1:58364 - "GET /history/current_history_json?since=2024-02-23T19:31:05.000216 HTTP/1.1" 200 +uvicorn.access INFO 2024-02-23 14:31:57,035 [pN:main.1,p:78709,tN:MainThread] 127.0.0.1:33278 - "GET /history/current_history_json?since=2024-02-23T19:31:05.000216 HTTP/1.1" 200 +uvicorn.access INFO 2024-02-23 14:31:59,235 [pN:main.1,p:78709,tN:MainThread] 127.0.0.1:33288 - "GET /api/entry_points?running=true HTTP/1.1" 200 +uvicorn.access INFO 2024-02-23 14:32:00,061 [pN:main.1,p:78709,tN:MainThread] 127.0.0.1:33288 - "GET /history/current_history_json?since=2024-02-23T19:31:05.000216 HTTP/1.1" 200 +uvicorn.access INFO 2024-02-23 14:32:03,091 [pN:main.1,p:78709,tN:MainThread] 127.0.0.1:33290 - "GET /history/current_history_json?since=2024-02-23T19:31:05.000216 HTTP/1.1" 200 +uvicorn.access INFO 2024-02-23 14:32:06,121 [pN:main.1,p:78709,tN:MainThread] 127.0.0.1:51182 - "GET /history/current_history_json?since=2024-02-23T19:31:05.000216 HTTP/1.1" 200 +uvicorn.access INFO 2024-02-23 14:32:09,178 [pN:main.1,p:78709,tN:MainThread] 127.0.0.1:51190 - "GET /history/current_history_json?since=2024-02-23T19:31:05.000216 HTTP/1.1" 200 +uvicorn.access INFO 2024-02-23 14:32:09,235 [pN:main.1,p:78709,tN:MainThread] 127.0.0.1:51190 - "GET /api/entry_points?running=true HTTP/1.1" 200 +uvicorn.access INFO 2024-02-23 14:32:12,215 [pN:main.1,p:78709,tN:MainThread] 127.0.0.1:51200 - "GET /history/current_history_json?since=2024-02-23T19:31:05.000216 HTTP/1.1" 200 +uvicorn.access INFO 2024-02-23 14:32:15,244 [pN:main.1,p:78709,tN:MainThread] 127.0.0.1:51208 - "GET /history/current_history_json?since=2024-02-23T19:31:05.000216 HTTP/1.1" 200 +uvicorn.access INFO 2024-02-23 14:32:18,272 [pN:main.1,p:78709,tN:MainThread] 127.0.0.1:49292 - "GET /history/current_history_json?since=2024-02-23T19:31:05.000216 HTTP/1.1" 200 +uvicorn.access INFO 2024-02-23 14:32:19,237 [pN:main.1,p:78709,tN:MainThread] 127.0.0.1:49292 - "GET /api/entry_points?running=true HTTP/1.1" 200 +uvicorn.access INFO 2024-02-23 14:32:21,303 [pN:main.1,p:78709,tN:MainThread] 127.0.0.1:49304 - "GET /history/current_history_json?since=2024-02-23T19:31:05.000216 HTTP/1.1" 200 +uvicorn.access INFO 2024-02-23 14:32:24,334 [pN:main.1,p:78709,tN:MainThread] 127.0.0.1:49306 - "GET /history/current_history_json?since=2024-02-23T19:31:05.000216 HTTP/1.1" 200 +uvicorn.access INFO 2024-02-23 14:32:27,364 [pN:main.1,p:78709,tN:MainThread] 127.0.0.1:52516 - "GET /history/current_history_json?since=2024-02-23T19:31:05.000216 HTTP/1.1" 200 +uvicorn.access INFO 2024-02-23 14:32:29,237 [pN:main.1,p:78709,tN:MainThread] 127.0.0.1:52516 - "GET /api/entry_points?running=true HTTP/1.1" 200 +uvicorn.access INFO 2024-02-23 14:32:30,394 [pN:main.1,p:78709,tN:MainThread] 127.0.0.1:52516 - "GET /history/current_history_json?since=2024-02-23T19:31:05.000216 HTTP/1.1" 200 +uvicorn.access INFO 2024-02-23 14:32:34,227 [pN:main.1,p:78709,tN:MainThread] 127.0.0.1:52530 - "GET /history/current_history_json?since=2024-02-23T19:31:05.000216 HTTP/1.1" 200 +uvicorn.access INFO 2024-02-23 14:32:40,226 [pN:main.1,p:78709,tN:MainThread] 127.0.0.1:55960 - "GET /api/entry_points?running=true HTTP/1.1" 200 +uvicorn.access INFO 2024-02-23 14:32:50,229 [pN:main.1,p:78709,tN:MainThread] 127.0.0.1:47220 - "GET /api/entry_points?running=true HTTP/1.1" 200 +uvicorn.access INFO 2024-02-23 14:33:01,227 [pN:main.1,p:78709,tN:MainThread] 127.0.0.1:38834 - "GET /api/entry_points?running=true HTTP/1.1" 200 +uvicorn.access INFO 2024-02-23 14:33:11,237 [pN:main.1,p:78709,tN:MainThread] 127.0.0.1:54950 - "GET /api/entry_points?running=true HTTP/1.1" 200 +uvicorn.access INFO 2024-02-23 14:33:22,228 [pN:main.1,p:78709,tN:MainThread] 127.0.0.1:51772 - "GET /api/entry_points?running=true HTTP/1.1" 200 +uvicorn.access INFO 2024-02-23 14:33:35,225 [pN:main.1,p:78709,tN:MainThread] 127.0.0.1:39714 - "GET /history/current_history_json?since=2024-02-23T19:31:05.000216 HTTP/1.1" 200 +uvicorn.access INFO 2024-02-23 14:34:03,233 [pN:main.1,p:78709,tN:MainThread] 127.0.0.1:32804 - "GET /api/entry_points?running=true HTTP/1.1" 200 +uvicorn.access INFO 2024-02-23 14:34:36,223 [pN:main.1,p:78709,tN:MainThread] 127.0.0.1:43248 - "GET /history/current_history_json?since=2024-02-23T19:31:05.000216 HTTP/1.1" 200 +uvicorn.access INFO 2024-02-23 14:35:03,231 [pN:main.1,p:78709,tN:MainThread] 127.0.0.1:49414 - "GET /api/entry_points?running=true HTTP/1.1" 200 +uvicorn.access INFO 2024-02-23 14:35:37,224 [pN:main.1,p:78709,tN:MainThread] 127.0.0.1:54092 - "GET /history/current_history_json?since=2024-02-23T19:31:05.000216 HTTP/1.1" 200 +uvicorn.access INFO 2024-02-23 14:35:47,545 [pN:main.1,p:78709,tN:MainThread] 127.0.0.1:33818 - "GET /api/entry_points?running=true HTTP/1.1" 200 +uvicorn.access INFO 2024-02-23 14:35:47,547 [pN:main.1,p:78709,tN:MainThread] 127.0.0.1:33804 - "GET /history/current_history_json?since=2024-02-23T19:31:05.000216 HTTP/1.1" 200 +uvicorn.access INFO 2024-02-23 14:35:50,579 [pN:main.1,p:78709,tN:MainThread] 127.0.0.1:33828 - "GET /history/current_history_json?since=2024-02-23T19:31:05.000216 HTTP/1.1" 200 +uvicorn.access INFO 2024-02-23 14:35:53,609 [pN:main.1,p:78709,tN:MainThread] 127.0.0.1:33832 - "GET /history/current_history_json?since=2024-02-23T19:31:05.000216 HTTP/1.1" 200 +uvicorn.access INFO 2024-02-23 14:35:56,638 [pN:main.1,p:78709,tN:MainThread] 127.0.0.1:48808 - "GET /history/current_history_json?since=2024-02-23T19:31:05.000216 HTTP/1.1" 200 +uvicorn.access INFO 2024-02-23 14:35:57,528 [pN:main.1,p:78709,tN:MainThread] 127.0.0.1:48808 - "GET /api/entry_points?running=true HTTP/1.1" 200 +uvicorn.access INFO 2024-02-23 14:35:59,667 [pN:main.1,p:78709,tN:MainThread] 127.0.0.1:48810 - "GET /history/current_history_json?since=2024-02-23T19:31:05.000216 HTTP/1.1" 200 +uvicorn.access INFO 2024-02-23 14:36:02,692 [pN:main.1,p:78709,tN:MainThread] 127.0.0.1:48822 - "GET /history/current_history_json?since=2024-02-23T19:31:05.000216 HTTP/1.1" 200 +uvicorn.access INFO 2024-02-23 14:36:05,722 [pN:main.1,p:78709,tN:MainThread] 127.0.0.1:40204 - "GET /history/current_history_json?since=2024-02-23T19:31:05.000216 HTTP/1.1" 200 +uvicorn.access INFO 2024-02-23 14:36:07,532 [pN:main.1,p:78709,tN:MainThread] 127.0.0.1:40204 - "GET /api/entry_points?running=true HTTP/1.1" 200 +uvicorn.access INFO 2024-02-23 14:36:08,754 [pN:main.1,p:78709,tN:MainThread] 127.0.0.1:40204 - "GET /history/current_history_json?since=2024-02-23T19:31:05.000216 HTTP/1.1" 200 +uvicorn.access INFO 2024-02-23 14:36:11,784 [pN:main.1,p:78709,tN:MainThread] 127.0.0.1:40210 - "GET /history/current_history_json?since=2024-02-23T19:31:05.000216 HTTP/1.1" 200 +uvicorn.access INFO 2024-02-23 14:36:14,812 [pN:main.1,p:78709,tN:MainThread] 127.0.0.1:40220 - "GET /history/current_history_json?since=2024-02-23T19:31:05.000216 HTTP/1.1" 200 +uvicorn.access INFO 2024-02-23 14:36:17,532 [pN:main.1,p:78709,tN:MainThread] 127.0.0.1:46790 - "GET /api/entry_points?running=true HTTP/1.1" 200 +uvicorn.access INFO 2024-02-23 14:36:17,840 [pN:main.1,p:78709,tN:MainThread] 127.0.0.1:46790 - "GET /history/current_history_json?since=2024-02-23T19:31:05.000216 HTTP/1.1" 200 +uvicorn.access INFO 2024-02-23 14:36:20,868 [pN:main.1,p:78709,tN:MainThread] 127.0.0.1:46792 - "GET /history/current_history_json?since=2024-02-23T19:31:05.000216 HTTP/1.1" 200 +uvicorn.access INFO 2024-02-23 14:36:23,898 [pN:main.1,p:78709,tN:MainThread] 127.0.0.1:46796 - "GET /history/current_history_json?since=2024-02-23T19:31:05.000216 HTTP/1.1" 200 +uvicorn.access INFO 2024-02-23 14:36:26,927 [pN:main.1,p:78709,tN:MainThread] 127.0.0.1:44190 - "GET /history/current_history_json?since=2024-02-23T19:31:05.000216 HTTP/1.1" 200 +uvicorn.access INFO 2024-02-23 14:36:27,535 [pN:main.1,p:78709,tN:MainThread] 127.0.0.1:44190 - "GET /api/entry_points?running=true HTTP/1.1" 200 +uvicorn.access INFO 2024-02-23 14:36:29,958 [pN:main.1,p:78709,tN:MainThread] 127.0.0.1:44196 - "GET /history/current_history_json?since=2024-02-23T19:31:05.000216 HTTP/1.1" 200 +uvicorn.access INFO 2024-02-23 14:36:32,986 [pN:main.1,p:78709,tN:MainThread] 127.0.0.1:44202 - "GET /history/current_history_json?since=2024-02-23T19:31:05.000216 HTTP/1.1" 200 + +==> /tmp/tmpqrlh6ih1/gravity/log/celery-beat.log <== +[2024-02-23 14:36:34,242: DEBUG/MainProcess] beat: Synchronizing schedule... +[2024-02-23 14:36:34,243: DEBUG/MainProcess] beat: Waking up in 5.00 minutes. + +==> /tmp/tmpqrlh6ih1/gravity/log/gunicorn.log <== +uvicorn.access INFO 2024-02-23 14:36:36,013 [pN:main.1,p:78709,tN:MainThread] 127.0.0.1:47172 - "GET /history/current_history_json?since=2024-02-23T19:31:05.000216 HTTP/1.1" 200 +uvicorn.access INFO 2024-02-23 14:36:37,534 [pN:main.1,p:78709,tN:MainThread] 127.0.0.1:47172 - "GET /api/entry_points?running=true HTTP/1.1" 200 +uvicorn.access INFO 2024-02-23 14:36:39,042 [pN:main.1,p:78709,tN:MainThread] 127.0.0.1:47172 - "GET /history/current_history_json?since=2024-02-23T19:31:05.000216 HTTP/1.1" 200 +uvicorn.access INFO 2024-02-23 14:36:42,077 [pN:main.1,p:78709,tN:MainThread] 127.0.0.1:47182 - "GET /history/current_history_json?since=2024-02-23T19:31:05.000216 HTTP/1.1" 200 +uvicorn.access INFO 2024-02-23 14:36:45,106 [pN:main.1,p:78709,tN:MainThread] 127.0.0.1:47188 - "GET /history/current_history_json?since=2024-02-23T19:31:05.000216 HTTP/1.1" 200 +uvicorn.access INFO 2024-02-23 14:36:47,538 [pN:main.1,p:78709,tN:MainThread] 127.0.0.1:51220 - "GET /api/entry_points?running=true HTTP/1.1" 200 +uvicorn.access INFO 2024-02-23 14:36:48,135 [pN:main.1,p:78709,tN:MainThread] 127.0.0.1:51220 - "GET /history/current_history_json?since=2024-02-23T19:31:05.000216 HTTP/1.1" 200 +uvicorn.access INFO 2024-02-23 14:36:51,166 [pN:main.1,p:78709,tN:MainThread] 127.0.0.1:51236 - "GET /history/current_history_json?since=2024-02-23T19:31:05.000216 HTTP/1.1" 200 +uvicorn.access INFO 2024-02-23 14:36:54,194 [pN:main.1,p:78709,tN:MainThread] 127.0.0.1:51252 - "GET /history/current_history_json?since=2024-02-23T19:31:05.000216 HTTP/1.1" 200 +uvicorn.access INFO 2024-02-23 14:36:57,223 [pN:main.1,p:78709,tN:MainThread] 127.0.0.1:59054 - "GET /history/current_history_json?since=2024-02-23T19:31:05.000216 HTTP/1.1" 200 +uvicorn.access INFO 2024-02-23 14:36:57,539 [pN:main.1,p:78709,tN:MainThread] 127.0.0.1:59054 - "GET /api/entry_points?running=true HTTP/1.1" 200 +uvicorn.access INFO 2024-02-23 14:37:00,252 [pN:main.1,p:78709,tN:MainThread] 127.0.0.1:59056 - "GET /history/current_history_json?since=2024-02-23T19:31:05.000216 HTTP/1.1" 200 +uvicorn.access INFO 2024-02-23 14:37:03,283 [pN:main.1,p:78709,tN:MainThread] 127.0.0.1:59058 - "GET /history/current_history_json?since=2024-02-23T19:31:05.000216 HTTP/1.1" 200 +uvicorn.access INFO 2024-02-23 14:37:06,312 [pN:main.1,p:78709,tN:MainThread] 127.0.0.1:40442 - "GET /history/current_history_json?since=2024-02-23T19:31:05.000216 HTTP/1.1" 200 +uvicorn.access INFO 2024-02-23 14:37:07,540 [pN:main.1,p:78709,tN:MainThread] 127.0.0.1:40442 - "GET /api/entry_points?running=true HTTP/1.1" 200 +uvicorn.access INFO 2024-02-23 14:37:09,340 [pN:main.1,p:78709,tN:MainThread] 127.0.0.1:40442 - "GET /history/current_history_json?since=2024-02-23T19:31:05.000216 HTTP/1.1" 200 +uvicorn.access INFO 2024-02-23 14:37:12,369 [pN:main.1,p:78709,tN:MainThread] 127.0.0.1:40452 - "GET /history/current_history_json?since=2024-02-23T19:31:05.000216 HTTP/1.1" 200 +uvicorn.access INFO 2024-02-23 14:37:15,399 [pN:main.1,p:78709,tN:MainThread] 127.0.0.1:40466 - "GET /history/current_history_json?since=2024-02-23T19:31:05.000216 HTTP/1.1" 200 +uvicorn.access INFO 2024-02-23 14:37:17,540 [pN:main.1,p:78709,tN:MainThread] 127.0.0.1:33438 - "GET /api/entry_points?running=true HTTP/1.1" 200 +uvicorn.access INFO 2024-02-23 14:37:18,427 [pN:main.1,p:78709,tN:MainThread] 127.0.0.1:33438 - "GET /history/current_history_json?since=2024-02-23T19:31:05.000216 HTTP/1.1" 200 +uvicorn.access INFO 2024-02-23 14:37:21,460 [pN:main.1,p:78709,tN:MainThread] 127.0.0.1:33454 - "GET /history/current_history_json?since=2024-02-23T19:31:05.000216 HTTP/1.1" 200 +uvicorn.access INFO 2024-02-23 14:37:24,489 [pN:main.1,p:78709,tN:MainThread] 127.0.0.1:33460 - "GET /history/current_history_json?since=2024-02-23T19:31:05.000216 HTTP/1.1" 200 +uvicorn.access INFO 2024-02-23 14:37:27,518 [pN:main.1,p:78709,tN:MainThread] 127.0.0.1:35406 - "GET /history/current_history_json?since=2024-02-23T19:31:05.000216 HTTP/1.1" 200 +uvicorn.access INFO 2024-02-23 14:37:27,540 [pN:main.1,p:78709,tN:MainThread] 127.0.0.1:35420 - "GET /api/entry_points?running=true HTTP/1.1" 200 +uvicorn.access INFO 2024-02-23 14:37:30,550 [pN:main.1,p:78709,tN:MainThread] 127.0.0.1:35436 - "GET /history/current_history_json?since=2024-02-23T19:31:05.000216 HTTP/1.1" 200 +uvicorn.access INFO 2024-02-23 14:37:33,583 [pN:main.1,p:78709,tN:MainThread] 127.0.0.1:35442 - "GET /history/current_history_json?since=2024-02-23T19:31:05.000216 HTTP/1.1" 200 +uvicorn.access INFO 2024-02-23 14:37:36,611 [pN:main.1,p:78709,tN:MainThread] 127.0.0.1:48378 - "GET /history/current_history_json?since=2024-02-23T19:31:05.000216 HTTP/1.1" 200 +uvicorn.access INFO 2024-02-23 14:37:37,543 [pN:main.1,p:78709,tN:MainThread] 127.0.0.1:48378 - "GET /api/entry_points?running=true HTTP/1.1" 200 +uvicorn.access INFO 2024-02-23 14:37:39,651 [pN:main.1,p:78709,tN:MainThread] 127.0.0.1:48384 - "GET /history/current_history_json?since=2024-02-23T19:31:05.000216 HTTP/1.1" 200 +uvicorn.access INFO 2024-02-23 14:37:42,682 [pN:main.1,p:78709,tN:MainThread] 127.0.0.1:48392 - "GET /history/current_history_json?since=2024-02-23T19:31:05.000216 HTTP/1.1" 200 +uvicorn.access INFO 2024-02-23 14:37:45,764 [pN:main.1,p:78709,tN:MainThread] 127.0.0.1:42318 - "GET /history/current_history_json?since=2024-02-23T19:31:05.000216 HTTP/1.1" 200 +uvicorn.access INFO 2024-02-23 14:37:47,545 [pN:main.1,p:78709,tN:MainThread] 127.0.0.1:42318 - "GET /api/entry_points?running=true HTTP/1.1" 200 +uvicorn.access INFO 2024-02-23 14:37:48,830 [pN:main.1,p:78709,tN:MainThread] 127.0.0.1:42318 - "GET /history/current_history_json?since=2024-02-23T19:31:05.000216 HTTP/1.1" 200 +uvicorn.access INFO 2024-02-23 14:37:51,858 [pN:main.1,p:78709,tN:MainThread] 127.0.0.1:42334 - "GET /history/current_history_json?since=2024-02-23T19:31:05.000216 HTTP/1.1" 200 +uvicorn.access INFO 2024-02-23 14:37:54,890 [pN:main.1,p:78709,tN:MainThread] 127.0.0.1:42350 - "GET /history/current_history_json?since=2024-02-23T19:31:05.000216 HTTP/1.1" 200 +uvicorn.access INFO 2024-02-23 14:37:57,545 [pN:main.1,p:78709,tN:MainThread] 127.0.0.1:58970 - "GET /api/entry_points?running=true HTTP/1.1" 200 +uvicorn.access INFO 2024-02-23 14:37:57,918 [pN:main.1,p:78709,tN:MainThread] 127.0.0.1:58970 - "GET /history/current_history_json?since=2024-02-23T19:31:05.000216 HTTP/1.1" 200 +uvicorn.access INFO 2024-02-23 14:38:01,223 [pN:main.1,p:78709,tN:MainThread] 127.0.0.1:58972 - "GET /history/current_history_json?since=2024-02-23T19:31:05.000216 HTTP/1.1" 200 +uvicorn.access INFO 2024-02-23 14:38:05,315 [pN:main.1,p:78709,tN:MainThread] 127.0.0.1:58982 - "GET /history/current_history_json?since=2024-02-23T19:31:05.000216 HTTP/1.1" 200 +uvicorn.access INFO 2024-02-23 14:38:07,464 [pN:main.1,p:78709,tN:MainThread] 127.0.0.1:38296 - "GET /api/tools/ncbi_fcs_adaptor/build?version=latest&tool_version=latest HTTP/1.1" 200 +uvicorn.access INFO 2024-02-23 14:38:07,569 [pN:main.1,p:78709,tN:MainThread] 127.0.0.1:38296 - "POST /api/tools/ncbi_fcs_adaptor/build HTTP/1.1" 200 +uvicorn.access INFO 2024-02-23 14:38:07,598 [pN:main.1,p:78709,tN:MainThread] 127.0.0.1:38312 - "GET /api/entry_points?running=true HTTP/1.1" 200 +uvicorn.access INFO 2024-02-23 14:38:08,342 [pN:main.1,p:78709,tN:MainThread] 127.0.0.1:38312 - "GET /history/current_history_json?since=2024-02-23T19:31:05.000216 HTTP/1.1" 200 +uvicorn.access INFO 2024-02-23 14:38:11,372 [pN:main.1,p:78709,tN:MainThread] 127.0.0.1:38318 - "GET /history/current_history_json?since=2024-02-23T19:31:05.000216 HTTP/1.1" 200 +uvicorn.access INFO 2024-02-23 14:38:14,401 [pN:main.1,p:78709,tN:MainThread] 127.0.0.1:38326 - "GET /history/current_history_json?since=2024-02-23T19:31:05.000216 HTTP/1.1" 200 +uvicorn.access INFO 2024-02-23 14:38:17,430 [pN:main.1,p:78709,tN:MainThread] 127.0.0.1:40108 - "GET /history/current_history_json?since=2024-02-23T19:31:05.000216 HTTP/1.1" 200 +uvicorn.access INFO 2024-02-23 14:38:17,588 [pN:main.1,p:78709,tN:MainThread] 127.0.0.1:40108 - "GET /api/entry_points?running=true HTTP/1.1" 200 +galaxy.tools INFO 2024-02-23 14:38:19,507 [pN:main.1,p:78709,tN:WSGI_7] Validated and populated state for tool request (4.275 ms) +galaxy.tools.actions INFO 2024-02-23 14:38:19,523 [pN:main.1,p:78709,tN:WSGI_7] Handled output named output1 for tool CONVERTER_gz_to_uncompressed (1.515 ms) +galaxy.tools.actions INFO 2024-02-23 14:38:19,523 [pN:main.1,p:78709,tN:WSGI_7] Added output datasets to history (0.330 ms) +galaxy.tools.actions INFO 2024-02-23 14:38:19,525 [pN:main.1,p:78709,tN:WSGI_7] Setup for job Job[unflushed,tool_id=CONVERTER_gz_to_uncompressed] complete, ready to be enqueued (1.727 ms) +galaxy.tools.actions INFO 2024-02-23 14:38:19,553 [pN:main.1,p:78709,tN:WSGI_7] Flushed transaction for job Job[id=2,tool_id=CONVERTER_gz_to_uncompressed] (27.383 ms) +galaxy.web_stack.handlers INFO 2024-02-23 14:38:19,562 [pN:main.1,p:78709,tN:WSGI_7] Flushed transaction for Job[id=2,tool_id=CONVERTER_gz_to_uncompressed] (8.918 ms) +galaxy.web_stack.handlers INFO 2024-02-23 14:38:19,562 [pN:main.1,p:78709,tN:WSGI_7] (Job[id=2,tool_id=CONVERTER_gz_to_uncompressed]) Handler '_default_' assigned using 'HANDLER_ASSIGNMENT_METHODS.DB_SKIP_LOCKED' assignment method +galaxy.tools.actions INFO 2024-02-23 14:38:19,600 [pN:main.1,p:78709,tN:WSGI_7] Handled output named adaptor_report for tool ncbi_fcs_adaptor (4.755 ms) +galaxy.tools.actions INFO 2024-02-23 14:38:19,603 [pN:main.1,p:78709,tN:WSGI_7] Handled output named clean_fasta for tool ncbi_fcs_adaptor (2.600 ms) +galaxy.tools.actions INFO 2024-02-23 14:38:19,611 [pN:main.1,p:78709,tN:WSGI_7] Added output datasets to history (7.890 ms) +galaxy.tools.actions INFO 2024-02-23 14:38:19,612 [pN:main.1,p:78709,tN:WSGI_7] Setup for job Job[unflushed,tool_id=ncbi_fcs_adaptor] complete, ready to be enqueued (1.323 ms) +galaxy.tools.execute DEBUG 2024-02-23 14:38:19,613 [pN:main.1,p:78709,tN:WSGI_7] Tool ncbi_fcs_adaptor created job None (102.802 ms) +galaxy.web_stack.handlers INFO 2024-02-23 14:38:19,632 [pN:main.1,p:78709,tN:WSGI_7] (Job[id=3,tool_id=ncbi_fcs_adaptor]) Handler '_default_' assigned using 'HANDLER_ASSIGNMENT_METHODS.DB_SKIP_LOCKED' assignment method +galaxy.tools.execute DEBUG 2024-02-23 14:38:19,636 [pN:main.1,p:78709,tN:WSGI_7] Created 1 job(s) for tool ncbi_fcs_adaptor request (128.259 ms) +uvicorn.access INFO 2024-02-23 14:38:19,648 [pN:main.1,p:78709,tN:MainThread] 127.0.0.1:40108 - "POST /api/tools HTTP/1.1" 200 +uvicorn.access INFO 2024-02-23 14:38:19,678 [pN:main.1,p:78709,tN:MainThread] 127.0.0.1:40108 - "GET /history/current_history_json?since=2024-02-23T19:31:05.000216 HTTP/1.1" 200 +uvicorn.access INFO 2024-02-23 14:38:19,732 [pN:main.1,p:78709,tN:MainThread] 127.0.0.1:40108 - "GET /api/histories/e94ef2b25ec88be9/contents?v=dev&limit=1000&q=update_time-ge&qv=2024-02-23T19:31:05.566Z HTTP/1.1" 200 +galaxy.jobs.mapper DEBUG 2024-02-23 14:38:19,766 [pN:main.1,p:78709,tN:JobHandlerQueue.monitor_thread] (2) Mapped job to destination id: docker_local +galaxy.jobs.handler DEBUG 2024-02-23 14:38:19,773 [pN:main.1,p:78709,tN:JobHandlerQueue.monitor_thread] (2) Dispatching to local runner +galaxy.jobs DEBUG 2024-02-23 14:38:19,800 [pN:main.1,p:78709,tN:JobHandlerQueue.monitor_thread] (2) Persisting job destination (destination id: docker_local) +uvicorn.access INFO 2024-02-23 14:38:19,828 [pN:main.1,p:78709,tN:MainThread] 127.0.0.1:40108 - "GET /api/users/e94ef2b25ec88be9 HTTP/1.1" 200 +uvicorn.access INFO 2024-02-23 14:38:19,856 [pN:main.1,p:78709,tN:MainThread] 127.0.0.1:40112 - "GET /api/histories/e94ef2b25ec88be9/contents?v=dev&order=hid&offset=0&limit=100&q=deleted&qv=false&q=visible&qv=true HTTP/1.1" 200 +galaxy.jobs DEBUG 2024-02-23 14:38:19,858 [pN:main.1,p:78709,tN:JobHandlerQueue.monitor_thread] (2) Working directory for job is: /tmp/tmpqrlh6ih1/job_working_directory/000/2 +galaxy.jobs.runners DEBUG 2024-02-23 14:38:19,870 [pN:main.1,p:78709,tN:JobHandlerQueue.monitor_thread] Job [2] queued (96.880 ms) +galaxy.jobs.handler INFO 2024-02-23 14:38:19,884 [pN:main.1,p:78709,tN:JobHandlerQueue.monitor_thread] (2) Job dispatched +galaxy.jobs DEBUG 2024-02-23 14:38:19,938 [pN:main.1,p:78709,tN:LocalRunner.work_thread-3] Job wrapper for Job [2] prepared (47.790 ms) +galaxy.tool_util.deps.containers INFO 2024-02-23 14:38:19,939 [pN:main.1,p:78709,tN:LocalRunner.work_thread-3] Checking with container resolver [ExplicitContainerResolver[]] found description [None] +galaxy.tool_util.deps.container_resolvers.mulled DEBUG 2024-02-23 14:38:19,939 [pN:main.1,p:78709,tN:LocalRunner.work_thread-3] Image name for tool CONVERTER_gz_to_uncompressed: no targets +galaxy.tool_util.deps.containers INFO 2024-02-23 14:38:19,939 [pN:main.1,p:78709,tN:LocalRunner.work_thread-3] Checking with container resolver [CachedMulledDockerContainerResolver[namespace=biocontainers]] found description [None] +galaxy.tool_util.deps.container_resolvers.mulled DEBUG 2024-02-23 14:38:19,939 [pN:main.1,p:78709,tN:LocalRunner.work_thread-3] Image name for tool CONVERTER_gz_to_uncompressed: no targets +galaxy.tool_util.deps.containers INFO 2024-02-23 14:38:19,939 [pN:main.1,p:78709,tN:LocalRunner.work_thread-3] Checking with container resolver [CachedMulledDockerContainerResolver[namespace=local]] found description [None] +galaxy.tool_util.deps.container_resolvers.mulled DEBUG 2024-02-23 14:38:19,939 [pN:main.1,p:78709,tN:LocalRunner.work_thread-3] Image name for tool CONVERTER_gz_to_uncompressed: no targets +galaxy.tool_util.deps.containers INFO 2024-02-23 14:38:19,939 [pN:main.1,p:78709,tN:LocalRunner.work_thread-3] Checking with container resolver [MulledDockerContainerResolver[namespace=biocontainers]] found description [None] +galaxy.tool_util.deps.container_resolvers.mulled DEBUG 2024-02-23 14:38:19,939 [pN:main.1,p:78709,tN:LocalRunner.work_thread-3] Image name for tool CONVERTER_gz_to_uncompressed: no targets +galaxy.tool_util.deps.containers INFO 2024-02-23 14:38:19,939 [pN:main.1,p:78709,tN:LocalRunner.work_thread-3] Checking with container resolver [BuildDockerContainerResolver[namespace=local]] found description [None] +galaxy.jobs.command_factory INFO 2024-02-23 14:38:19,971 [pN:main.1,p:78709,tN:LocalRunner.work_thread-3] Built script [/tmp/tmpqrlh6ih1/job_working_directory/000/2/tool_script.sh] for tool command [cp '/tmp/tmpqrlh6ih1/job_working_directory/000/2/configs/tmputamy64b' 'galaxy.json' && gzip -dcf '/tmp/tmpqrlh6ih1/files/b/2/5/dataset_b25039b4-189c-4c5a-9380-009d996fbf23.dat' > '/tmp/tmpqrlh6ih1/job_working_directory/000/2/outputs/dataset_9eacd1c3-39c4-4284-879f-5d377c761f3e.dat'] +galaxy.jobs.runners DEBUG 2024-02-23 14:38:20,010 [pN:main.1,p:78709,tN:LocalRunner.work_thread-3] (2) command is: mkdir -p working outputs configs +if [ -d _working ]; then + rm -rf working/ outputs/ configs/; cp -R _working working; cp -R _outputs outputs; cp -R _configs configs +else + cp -R working _working; cp -R outputs _outputs; cp -R configs _configs +fi +cd working; /bin/bash /tmp/tmpqrlh6ih1/job_working_directory/000/2/tool_script.sh > '../outputs/tool_stdout' 2> '../outputs/tool_stderr'; return_code=$?; echo $return_code > /tmp/tmpqrlh6ih1/job_working_directory/000/2/galaxy_2.ec; cd '/tmp/tmpqrlh6ih1/job_working_directory/000/2'; +[ "$GALAXY_VIRTUAL_ENV" = "None" ] && GALAXY_VIRTUAL_ENV="$_GALAXY_VIRTUAL_ENV"; _galaxy_setup_environment True; python metadata/set.py; sh -c "exit $return_code" +galaxy.jobs.runners.local DEBUG 2024-02-23 14:38:20,036 [pN:main.1,p:78709,tN:LocalRunner.work_thread-3] (2) executing job script: /tmp/tmpqrlh6ih1/job_working_directory/000/2/galaxy_2.sh +uvicorn.access INFO 2024-02-23 14:38:22,837 [pN:main.1,p:78709,tN:MainThread] 127.0.0.1:40116 - "GET /history/current_history_json?since=2024-02-23T19:38:19.000622 HTTP/1.1" 200 +uvicorn.access INFO 2024-02-23 14:38:22,871 [pN:main.1,p:78709,tN:MainThread] 127.0.0.1:40116 - "GET /api/histories/e94ef2b25ec88be9/contents?v=dev&limit=1000&q=update_time-ge&qv=2024-02-23T19:38:19.686Z HTTP/1.1" 200 +uvicorn.access INFO 2024-02-23 14:38:22,921 [pN:main.1,p:78709,tN:MainThread] 127.0.0.1:40116 - "GET /api/users/e94ef2b25ec88be9 HTTP/1.1" 200 +uvicorn.access INFO 2024-02-23 14:38:22,946 [pN:main.1,p:78709,tN:MainThread] 127.0.0.1:40118 - "GET /api/histories/e94ef2b25ec88be9/contents?v=dev&order=hid&offset=0&limit=100&q=deleted&qv=false&q=visible&qv=true HTTP/1.1" 200 +galaxy.jobs.runners.util.process_groups DEBUG 2024-02-23 14:38:23,760 [pN:main.1,p:78709,tN:LocalRunner.work_thread-3] check_pg(): No process found in process group 79031 +galaxy.jobs.runners.local DEBUG 2024-02-23 14:38:23,761 [pN:main.1,p:78709,tN:LocalRunner.work_thread-3] execution finished: /tmp/tmpqrlh6ih1/job_working_directory/000/2/galaxy_2.sh +galaxy.jobs DEBUG 2024-02-23 14:38:23,783 [pN:main.1,p:78709,tN:LocalRunner.work_thread-3] finish(): Moved /tmp/tmpqrlh6ih1/job_working_directory/000/2/outputs/dataset_9eacd1c3-39c4-4284-879f-5d377c761f3e.dat to /tmp/tmpqrlh6ih1/files/9/e/a/dataset_9eacd1c3-39c4-4284-879f-5d377c761f3e.dat +galaxy.tool_util.provided_metadata DEBUG 2024-02-23 14:38:23,790 [pN:main.1,p:78709,tN:LocalRunner.work_thread-3] unnamed outputs [{'output1': {'name': 'fcsadaptor_prok_test.fa uncompressed', 'ext': 'fasta'}}] +galaxy.model.metadata DEBUG 2024-02-23 14:38:23,795 [pN:main.1,p:78709,tN:LocalRunner.work_thread-3] loading metadata from file for: HistoryDatasetAssociation 2 +galaxy.jobs DEBUG 2024-02-23 14:38:23,823 [pN:main.1,p:78709,tN:LocalRunner.work_thread-3] job_wrapper.finish for job 2 executed (45.391 ms) +galaxy.jobs.mapper DEBUG 2024-02-23 14:38:23,983 [pN:main.1,p:78709,tN:JobHandlerQueue.monitor_thread] (3) Mapped job to destination id: docker_local +galaxy.jobs.handler DEBUG 2024-02-23 14:38:23,986 [pN:main.1,p:78709,tN:JobHandlerQueue.monitor_thread] (3) Dispatching to local runner +galaxy.jobs DEBUG 2024-02-23 14:38:23,991 [pN:main.1,p:78709,tN:JobHandlerQueue.monitor_thread] (3) Persisting job destination (destination id: docker_local) +galaxy.jobs DEBUG 2024-02-23 14:38:23,996 [pN:main.1,p:78709,tN:JobHandlerQueue.monitor_thread] (3) Working directory for job is: /tmp/tmpqrlh6ih1/job_working_directory/000/3 +galaxy.jobs.runners DEBUG 2024-02-23 14:38:24,002 [pN:main.1,p:78709,tN:JobHandlerQueue.monitor_thread] Job [3] queued (15.947 ms) +galaxy.jobs.handler INFO 2024-02-23 14:38:24,010 [pN:main.1,p:78709,tN:JobHandlerQueue.monitor_thread] (3) Job dispatched +galaxy.security.object_wrapper WARNING 2024-02-23 14:38:24,049 [pN:main.1,p:78709,tN:LocalRunner.work_thread-2] Unable to create dynamic subclass SafeStringWrapper__galaxy.model.none_like.None__NoneType__NotImplementedType__Number__SafeStringWrapper__ToolParameterValueWrapper__bool__bytearray__ellipsis for <class 'galaxy.model.none_like.NoneDataset'>, None: type() doesn't support MRO entry resolution; use types.new_class() +galaxy.jobs DEBUG 2024-02-23 14:38:24,062 [pN:main.1,p:78709,tN:LocalRunner.work_thread-2] Job wrapper for Job [3] prepared (43.024 ms) +galaxy.tool_util.deps.containers INFO 2024-02-23 14:38:24,062 [pN:main.1,p:78709,tN:LocalRunner.work_thread-2] Checking with container resolver [ExplicitContainerResolver[]] found description [ContainerDescription[identifier=ncbi/fcs-adaptor:0.5.0,type=docker]] +galaxy.jobs.command_factory INFO 2024-02-23 14:38:24,104 [pN:main.1,p:78709,tN:LocalRunner.work_thread-2] Built script [/tmp/tmpqrlh6ih1/job_working_directory/000/3/tool_script.sh] for tool command [/app/fcs/bin/av_screen_x -o "$(pwd)" '--prok' '/tmp/tmpqrlh6ih1/files/9/e/a/dataset_9eacd1c3-39c4-4284-879f-5d377c761f3e.dat'] +galaxy.jobs.runners DEBUG 2024-02-23 14:38:24,149 [pN:main.1,p:78709,tN:LocalRunner.work_thread-2] (3) command is: mkdir -p working outputs configs +if [ -d _working ]; then + rm -rf working/ outputs/ configs/; cp -R _working working; cp -R _outputs outputs; cp -R _configs configs +else + cp -R working _working; cp -R outputs _outputs; cp -R configs _configs +fi +cd working; +_on_exit() { + docker kill ddbfcc5b6a8b487cbddefc4091d43dcb &> /dev/null +} +trap _on_exit EXIT +docker inspect ncbi/fcs-adaptor:0.5.0 > /dev/null 2>&1 +[ $? -ne 0 ] && docker pull ncbi/fcs-adaptor:0.5.0 > /dev/null 2>&1 + +docker run -e "GALAXY_SLOTS=$GALAXY_SLOTS" -e "GALAXY_MEMORY_MB=$GALAXY_MEMORY_MB" -e "GALAXY_MEMORY_MB_PER_SLOT=$GALAXY_MEMORY_MB_PER_SLOT" -e "HOME=$HOME" -e "_GALAXY_JOB_HOME_DIR=$_GALAXY_JOB_HOME_DIR" -e "_GALAXY_JOB_TMP_DIR=$_GALAXY_JOB_TMP_DIR" -e "TMPDIR=$TMPDIR" -e "TMP=$TMP" -e "TEMP=$TEMP" --name ddbfcc5b6a8b487cbddefc4091d43dcb -v "$_GALAXY_JOB_TMP_DIR:$_GALAXY_JOB_TMP_DIR:rw" -v "$TMPDIR:$TMPDIR:rw" -v "$TMP:$TMP:rw" -v "$TEMP:$TEMP:rw" -v /scratch/rico/galaxy:/scratch/rico/galaxy:ro -v /scratch/rico/galaxytools/tools/ncbi_fcs_adaptor:/scratch/rico/galaxytools/tools/ncbi_fcs_adaptor:ro -v /tmp/tmpqrlh6ih1/job_working_directory/000/3:/tmp/tmpqrlh6ih1/job_working_directory/000/3:ro -v /tmp/tmpqrlh6ih1/job_working_directory/000/3/outputs:/tmp/tmpqrlh6ih1/job_working_directory/000/3/outputs:rw -v "$_GALAXY_JOB_HOME_DIR:$_GALAXY_JOB_HOME_DIR:rw" -v /tmp/tmpqrlh6ih1/job_working_directory/000/3/working:/tmp/tmpqrlh6ih1/job_working_directory/000/3/working:rw -v /tmp/tmpqrlh6ih1/files:/tmp/tmpqrlh6ih1/files:ro -v /scratch/rico/galaxy/tool-data:/scratch/rico/galaxy/tool-data:ro --cpus ${GALAXY_SLOTS:-1} -w /tmp/tmpqrlh6ih1/job_working_directory/000/3/working --rm --user 1028:1028 ncbi/fcs-adaptor:0.5.0 /bin/sh /tmp/tmpqrlh6ih1/job_working_directory/000/3/tool_script.sh > '../outputs/tool_stdout' 2> '../outputs/tool_stderr'; return_code=$?; echo $return_code > /tmp/tmpqrlh6ih1/job_working_directory/000/3/galaxy_3.ec; +if [ -f "/tmp/tmpqrlh6ih1/job_working_directory/000/3/working/fcs_adaptor_report.txt" ] ; then cp "/tmp/tmpqrlh6ih1/job_working_directory/000/3/working/fcs_adaptor_report.txt" "/tmp/tmpqrlh6ih1/job_working_directory/000/3/outputs/dataset_baab9cb3-daf7-4634-b244-35ef4dfc423e.dat" ; fi; +if [ -f "/tmp/tmpqrlh6ih1/job_working_directory/000/3/working/cleaned_sequences/"*".dat" ] ; then cp "/tmp/tmpqrlh6ih1/job_working_directory/000/3/working/cleaned_sequences/"*".dat" "/tmp/tmpqrlh6ih1/job_working_directory/000/3/outputs/dataset_6151fe42-edab-4c01-b97a-3428cd1f28b4.dat" ; fi; cd '/tmp/tmpqrlh6ih1/job_working_directory/000/3'; +[ "$GALAXY_VIRTUAL_ENV" = "None" ] && GALAXY_VIRTUAL_ENV="$_GALAXY_VIRTUAL_ENV"; _galaxy_setup_environment True; python metadata/set.py; sh -c "exit $return_code" +galaxy.jobs.runners.local DEBUG 2024-02-23 14:38:24,173 [pN:main.1,p:78709,tN:LocalRunner.work_thread-2] (3) executing job script: /tmp/tmpqrlh6ih1/job_working_directory/000/3/galaxy_3.sh +uvicorn.access INFO 2024-02-23 14:38:25,943 [pN:main.1,p:78709,tN:MainThread] 127.0.0.1:33910 - "GET /history/current_history_json?since=2024-02-23T19:38:20.000081 HTTP/1.1" 200 +uvicorn.access INFO 2024-02-23 14:38:26,002 [pN:main.1,p:78709,tN:MainThread] 127.0.0.1:33910 - "GET /api/histories/e94ef2b25ec88be9/contents?v=dev&limit=1000&q=update_time-ge&qv=2024-02-23T19:38:22.844Z HTTP/1.1" 200 +uvicorn.access INFO 2024-02-23 14:38:26,102 [pN:main.1,p:78709,tN:MainThread] 127.0.0.1:33910 - "GET /api/users/e94ef2b25ec88be9 HTTP/1.1" 200 +uvicorn.access INFO 2024-02-23 14:38:26,133 [pN:main.1,p:78709,tN:MainThread] 127.0.0.1:33920 - "GET /api/histories/e94ef2b25ec88be9/contents?v=dev&order=hid&offset=0&limit=100&q=deleted&qv=false&q=visible&qv=true HTTP/1.1" 200 +uvicorn.access INFO 2024-02-23 14:38:27,588 [pN:main.1,p:78709,tN:MainThread] 127.0.0.1:33920 - "GET /api/entry_points?running=true HTTP/1.1" 200 +uvicorn.access INFO 2024-02-23 14:38:29,108 [pN:main.1,p:78709,tN:MainThread] 127.0.0.1:33922 - "GET /history/current_history_json?since=2024-02-23T19:38:24.000221 HTTP/1.1" 200 +uvicorn.access INFO 2024-02-23 14:38:29,128 [pN:main.1,p:78709,tN:MainThread] 127.0.0.1:33920 - "GET /api/datasets/b35bb5a57277f2b7?view=detailed HTTP/1.1" 200 +uvicorn.access INFO 2024-02-23 14:38:30,842 [pN:main.1,p:78709,tN:MainThread] 127.0.0.1:33920 - "GET /api/jobs/b35bb5a57277f2b7/build_for_rerun HTTP/1.1" 200 +uvicorn.access INFO 2024-02-23 14:38:30,927 [pN:main.1,p:78709,tN:MainThread] 127.0.0.1:33920 - "POST /api/tools/ncbi_fcs_adaptor/build HTTP/1.1" 200 +uvicorn.access INFO 2024-02-23 14:38:32,135 [pN:main.1,p:78709,tN:MainThread] 127.0.0.1:33920 - "GET /history/current_history_json?since=2024-02-23T19:38:24.000221 HTTP/1.1" 200 +galaxy.tools INFO 2024-02-23 14:38:34,946 [pN:main.1,p:78709,tN:WSGI_8] Validated and populated state for tool request (4.404 ms) +galaxy.tools.actions INFO 2024-02-23 14:38:34,953 [pN:main.1,p:78709,tN:WSGI_8] Handled output named adaptor_report for tool ncbi_fcs_adaptor (0.981 ms) +galaxy.tools.actions INFO 2024-02-23 14:38:34,953 [pN:main.1,p:78709,tN:WSGI_8] Handled output named clean_fasta for tool ncbi_fcs_adaptor (0.660 ms) +galaxy.tools.actions DEBUG 2024-02-23 14:38:34,953 [pN:main.1,p:78709,tN:WSGI_8] Tool ncbi_fcs_adaptor output adaptor_log: dataset output filter (advanced['optional_log'] is not None and 'adaptor_log' in advanced['optional_log'].split(',')) failed: 'list' object has no attribute 'split' +galaxy.tools.actions INFO 2024-02-23 14:38:34,956 [pN:main.1,p:78709,tN:WSGI_8] Handled output named adaptor_log for tool ncbi_fcs_adaptor (2.348 ms) +galaxy.tools.actions DEBUG 2024-02-23 14:38:34,956 [pN:main.1,p:78709,tN:WSGI_8] Tool ncbi_fcs_adaptor output validate_fasta_log: dataset output filter (advanced['optional_log'] is not None and 'validate_fasta_log' in advanced['optional_log'].split(',')) failed: 'list' object has no attribute 'split' +galaxy.tools.actions INFO 2024-02-23 14:38:34,958 [pN:main.1,p:78709,tN:WSGI_8] Handled output named validate_fasta_log for tool ncbi_fcs_adaptor (2.229 ms) +galaxy.tools.actions INFO 2024-02-23 14:38:34,966 [pN:main.1,p:78709,tN:WSGI_8] Added output datasets to history (7.143 ms) +galaxy.tools.actions INFO 2024-02-23 14:38:34,968 [pN:main.1,p:78709,tN:WSGI_8] Setup for job Job[unflushed,tool_id=ncbi_fcs_adaptor] complete, ready to be enqueued (1.981 ms) +galaxy.tools.execute DEBUG 2024-02-23 14:38:34,968 [pN:main.1,p:78709,tN:WSGI_8] Tool ncbi_fcs_adaptor created job None (19.954 ms) +galaxy.web_stack.handlers INFO 2024-02-23 14:38:34,988 [pN:main.1,p:78709,tN:WSGI_8] (Job[id=4,tool_id=ncbi_fcs_adaptor]) Handler '_default_' assigned using 'HANDLER_ASSIGNMENT_METHODS.DB_SKIP_LOCKED' assignment method +galaxy.tools.execute DEBUG 2024-02-23 14:38:34,991 [pN:main.1,p:78709,tN:WSGI_8] Created 1 job(s) for tool ncbi_fcs_adaptor request (45.036 ms) +uvicorn.access INFO 2024-02-23 14:38:35,007 [pN:main.1,p:78709,tN:MainThread] 127.0.0.1:33928 - "POST /api/tools HTTP/1.1" 200 +uvicorn.access INFO 2024-02-23 14:38:35,036 [pN:main.1,p:78709,tN:MainThread] 127.0.0.1:33928 - "GET /history/current_history_json?since=2024-02-23T19:38:24.000221 HTTP/1.1" 200 +uvicorn.access INFO 2024-02-23 14:38:35,092 [pN:main.1,p:78709,tN:MainThread] 127.0.0.1:33928 - "GET /api/histories/e94ef2b25ec88be9/contents?v=dev&limit=1000&q=update_time-ge&qv=2024-02-23T19:38:25.956Z&details=b35bb5a57277f2b7 HTTP/1.1" 200 +uvicorn.access INFO 2024-02-23 14:38:35,135 [pN:main.1,p:78709,tN:MainThread] 127.0.0.1:33928 - "GET /api/users/e94ef2b25ec88be9 HTTP/1.1" 200 +uvicorn.access INFO 2024-02-23 14:38:35,156 [pN:main.1,p:78709,tN:MainThread] 127.0.0.1:33940 - "GET /api/histories/e94ef2b25ec88be9/contents?v=dev&order=hid&offset=0&limit=100&q=deleted&qv=false&q=visible&qv=true HTTP/1.1" 200 +galaxy.jobs.mapper DEBUG 2024-02-23 14:38:35,297 [pN:main.1,p:78709,tN:JobHandlerQueue.monitor_thread] (4) Mapped job to destination id: docker_local +galaxy.jobs.handler DEBUG 2024-02-23 14:38:35,300 [pN:main.1,p:78709,tN:JobHandlerQueue.monitor_thread] (4) Dispatching to local runner +galaxy.jobs DEBUG 2024-02-23 14:38:35,305 [pN:main.1,p:78709,tN:JobHandlerQueue.monitor_thread] (4) Persisting job destination (destination id: docker_local) +galaxy.jobs DEBUG 2024-02-23 14:38:35,310 [pN:main.1,p:78709,tN:JobHandlerQueue.monitor_thread] (4) Working directory for job is: /tmp/tmpqrlh6ih1/job_working_directory/000/4 +galaxy.jobs.runners DEBUG 2024-02-23 14:38:35,316 [pN:main.1,p:78709,tN:JobHandlerQueue.monitor_thread] Job [4] queued (15.787 ms) +galaxy.jobs.handler INFO 2024-02-23 14:38:35,323 [pN:main.1,p:78709,tN:JobHandlerQueue.monitor_thread] (4) Job dispatched +galaxy.jobs DEBUG 2024-02-23 14:38:35,369 [pN:main.1,p:78709,tN:LocalRunner.work_thread-0] Job wrapper for Job [4] prepared (36.045 ms) +galaxy.tool_util.deps.containers INFO 2024-02-23 14:38:35,369 [pN:main.1,p:78709,tN:LocalRunner.work_thread-0] Checking with container resolver [ExplicitContainerResolver[]] found description [ContainerDescription[identifier=ncbi/fcs-adaptor:0.5.0,type=docker]] +galaxy.jobs.command_factory INFO 2024-02-23 14:38:35,400 [pN:main.1,p:78709,tN:LocalRunner.work_thread-0] Built script [/tmp/tmpqrlh6ih1/job_working_directory/000/4/tool_script.sh] for tool command [/app/fcs/bin/av_screen_x -o "$(pwd)" '--prok' '/tmp/tmpqrlh6ih1/files/9/e/a/dataset_9eacd1c3-39c4-4284-879f-5d377c761f3e.dat'] +galaxy.jobs.runners DEBUG 2024-02-23 14:38:35,453 [pN:main.1,p:78709,tN:LocalRunner.work_thread-0] (4) command is: mkdir -p working outputs configs +if [ -d _working ]; then + rm -rf working/ outputs/ configs/; cp -R _working working; cp -R _outputs outputs; cp -R _configs configs +else + cp -R working _working; cp -R outputs _outputs; cp -R configs _configs +fi +cd working; +_on_exit() { + docker kill 0ed49ce4b7a6495fb6c27a5f2b8c6565 &> /dev/null +} +trap _on_exit EXIT +docker inspect ncbi/fcs-adaptor:0.5.0 > /dev/null 2>&1 +[ $? -ne 0 ] && docker pull ncbi/fcs-adaptor:0.5.0 > /dev/null 2>&1 + +docker run -e "GALAXY_SLOTS=$GALAXY_SLOTS" -e "GALAXY_MEMORY_MB=$GALAXY_MEMORY_MB" -e "GALAXY_MEMORY_MB_PER_SLOT=$GALAXY_MEMORY_MB_PER_SLOT" -e "HOME=$HOME" -e "_GALAXY_JOB_HOME_DIR=$_GALAXY_JOB_HOME_DIR" -e "_GALAXY_JOB_TMP_DIR=$_GALAXY_JOB_TMP_DIR" -e "TMPDIR=$TMPDIR" -e "TMP=$TMP" -e "TEMP=$TEMP" --name 0ed49ce4b7a6495fb6c27a5f2b8c6565 -v "$_GALAXY_JOB_TMP_DIR:$_GALAXY_JOB_TMP_DIR:rw" -v "$TMPDIR:$TMPDIR:rw" -v "$TMP:$TMP:rw" -v "$TEMP:$TEMP:rw" -v /scratch/rico/galaxy:/scratch/rico/galaxy:ro -v /scratch/rico/galaxytools/tools/ncbi_fcs_adaptor:/scratch/rico/galaxytools/tools/ncbi_fcs_adaptor:ro -v /tmp/tmpqrlh6ih1/job_working_directory/000/4:/tmp/tmpqrlh6ih1/job_working_directory/000/4:ro -v /tmp/tmpqrlh6ih1/job_working_directory/000/4/outputs:/tmp/tmpqrlh6ih1/job_working_directory/000/4/outputs:rw -v "$_GALAXY_JOB_HOME_DIR:$_GALAXY_JOB_HOME_DIR:rw" -v /tmp/tmpqrlh6ih1/job_working_directory/000/4/working:/tmp/tmpqrlh6ih1/job_working_directory/000/4/working:rw -v /tmp/tmpqrlh6ih1/files:/tmp/tmpqrlh6ih1/files:ro -v /scratch/rico/galaxy/tool-data:/scratch/rico/galaxy/tool-data:ro --cpus ${GALAXY_SLOTS:-1} -w /tmp/tmpqrlh6ih1/job_working_directory/000/4/working --rm --user 1028:1028 ncbi/fcs-adaptor:0.5.0 /bin/sh /tmp/tmpqrlh6ih1/job_working_directory/000/4/tool_script.sh > '../outputs/tool_stdout' 2> '../outputs/tool_stderr'; return_code=$?; echo $return_code > /tmp/tmpqrlh6ih1/job_working_directory/000/4/galaxy_4.ec; +if [ -f "/tmp/tmpqrlh6ih1/job_working_directory/000/4/working/fcs_adaptor_report.txt" ] ; then cp "/tmp/tmpqrlh6ih1/job_working_directory/000/4/working/fcs_adaptor_report.txt" "/tmp/tmpqrlh6ih1/job_working_directory/000/4/outputs/dataset_41844168-8b86-45ce-a8b8-c8552139307c.dat" ; fi; +if [ -f "/tmp/tmpqrlh6ih1/job_working_directory/000/4/working/cleaned_sequences/"*".dat" ] ; then cp "/tmp/tmpqrlh6ih1/job_working_directory/000/4/working/cleaned_sequences/"*".dat" "/tmp/tmpqrlh6ih1/job_working_directory/000/4/outputs/dataset_41da1090-710e-4c25-9a3d-97472671c387.dat" ; fi; +if [ -f "/tmp/tmpqrlh6ih1/job_working_directory/000/4/working/fcs_adaptor.log" ] ; then cp "/tmp/tmpqrlh6ih1/job_working_directory/000/4/working/fcs_adaptor.log" "/tmp/tmpqrlh6ih1/job_working_directory/000/4/outputs/dataset_5c65272e-4fbd-4386-af7d-d8cbdd90242a.dat" ; fi; +if [ -f "/tmp/tmpqrlh6ih1/job_working_directory/000/4/working/validate_fasta.txt" ] ; then cp "/tmp/tmpqrlh6ih1/job_working_directory/000/4/working/validate_fasta.txt" "/tmp/tmpqrlh6ih1/job_working_directory/000/4/outputs/dataset_92e5dc26-302e-4dbd-bd15-8050babfdff4.dat" ; fi; cd '/tmp/tmpqrlh6ih1/job_working_directory/000/4'; +[ "$GALAXY_VIRTUAL_ENV" = "None" ] && GALAXY_VIRTUAL_ENV="$_GALAXY_VIRTUAL_ENV"; _galaxy_setup_environment True; python metadata/set.py; sh -c "exit $return_code" +galaxy.jobs.runners.local DEBUG 2024-02-23 14:38:35,474 [pN:main.1,p:78709,tN:LocalRunner.work_thread-0] (4) executing job script: /tmp/tmpqrlh6ih1/job_working_directory/000/4/galaxy_4.sh +uvicorn.access INFO 2024-02-23 14:38:37,597 [pN:main.1,p:78709,tN:MainThread] 127.0.0.1:40730 - "GET /api/entry_points?running=true HTTP/1.1" 200 +uvicorn.access INFO 2024-02-23 14:38:38,198 [pN:main.1,p:78709,tN:MainThread] 127.0.0.1:40730 - "GET /history/current_history_json?since=2024-02-23T19:38:34.000978 HTTP/1.1" 200 +uvicorn.access INFO 2024-02-23 14:38:38,234 [pN:main.1,p:78709,tN:MainThread] 127.0.0.1:40730 - "GET /api/histories/e94ef2b25ec88be9/contents?v=dev&limit=1000&q=update_time-ge&qv=2024-02-23T19:38:35.061Z&details=b35bb5a57277f2b7 HTTP/1.1" 200 +uvicorn.access INFO 2024-02-23 14:38:38,279 [pN:main.1,p:78709,tN:MainThread] 127.0.0.1:40730 - "GET /api/users/e94ef2b25ec88be9 HTTP/1.1" 200 +uvicorn.access INFO 2024-02-23 14:38:38,301 [pN:main.1,p:78709,tN:MainThread] 127.0.0.1:40740 - "GET /api/histories/e94ef2b25ec88be9/contents?v=dev&order=hid&offset=0&limit=100&q=deleted&qv=false&q=visible&qv=true HTTP/1.1" 200 +uvicorn.access INFO 2024-02-23 14:38:41,295 [pN:main.1,p:78709,tN:MainThread] 127.0.0.1:40750 - "GET /history/current_history_json?since=2024-02-23T19:38:35.000518 HTTP/1.1" 200 +uvicorn.access INFO 2024-02-23 14:38:44,323 [pN:main.1,p:78709,tN:MainThread] 127.0.0.1:40762 - "GET /history/current_history_json?since=2024-02-23T19:38:35.000518 HTTP/1.1" 200 +uvicorn.access INFO 2024-02-23 14:38:47,347 [pN:main.1,p:78709,tN:MainThread] 127.0.0.1:47208 - "GET /history/current_history_json?since=2024-02-23T19:38:35.000518 HTTP/1.1" 200 +uvicorn.access INFO 2024-02-23 14:38:47,597 [pN:main.1,p:78709,tN:MainThread] 127.0.0.1:47208 - "GET /api/entry_points?running=true HTTP/1.1" 200 +uvicorn.access INFO 2024-02-23 14:38:50,375 [pN:main.1,p:78709,tN:MainThread] 127.0.0.1:47224 - "GET /history/current_history_json?since=2024-02-23T19:38:35.000518 HTTP/1.1" 200 +uvicorn.access INFO 2024-02-23 14:38:53,406 [pN:main.1,p:78709,tN:MainThread] 127.0.0.1:47236 - "GET /history/current_history_json?since=2024-02-23T19:38:35.000518 HTTP/1.1" 200 +uvicorn.access INFO 2024-02-23 14:38:56,435 [pN:main.1,p:78709,tN:MainThread] 127.0.0.1:55260 - "GET /history/current_history_json?since=2024-02-23T19:38:35.000518 HTTP/1.1" 200 +uvicorn.access INFO 2024-02-23 14:38:57,596 [pN:main.1,p:78709,tN:MainThread] 127.0.0.1:55260 - "GET /api/entry_points?running=true HTTP/1.1" 200 +uvicorn.access INFO 2024-02-23 14:38:59,466 [pN:main.1,p:78709,tN:MainThread] 127.0.0.1:55260 - "GET /history/current_history_json?since=2024-02-23T19:38:35.000518 HTTP/1.1" 200 +uvicorn.access INFO 2024-02-23 14:39:02,494 [pN:main.1,p:78709,tN:MainThread] 127.0.0.1:55264 - "GET /history/current_history_json?since=2024-02-23T19:38:35.000518 HTTP/1.1" 200 +uvicorn.access INFO 2024-02-23 14:39:05,526 [pN:main.1,p:78709,tN:MainThread] 127.0.0.1:55266 - "GET /history/current_history_json?since=2024-02-23T19:38:35.000518 HTTP/1.1" 200 +uvicorn.access INFO 2024-02-23 14:39:07,597 [pN:main.1,p:78709,tN:MainThread] 127.0.0.1:37544 - "GET /api/entry_points?running=true HTTP/1.1" 200 +uvicorn.access INFO 2024-02-23 14:39:08,555 [pN:main.1,p:78709,tN:MainThread] 127.0.0.1:37544 - "GET /history/current_history_json?since=2024-02-23T19:38:35.000518 HTTP/1.1" 200 +uvicorn.access INFO 2024-02-23 14:39:11,592 [pN:main.1,p:78709,tN:MainThread] 127.0.0.1:37560 - "GET /history/current_history_json?since=2024-02-23T19:38:35.000518 HTTP/1.1" 200 +uvicorn.access INFO 2024-02-23 14:39:14,624 [pN:main.1,p:78709,tN:MainThread] 127.0.0.1:37564 - "GET /history/current_history_json?since=2024-02-23T19:38:35.000518 HTTP/1.1" 200 +galaxy.jobs.runners.util.process_groups DEBUG 2024-02-23 14:39:15,076 [pN:main.1,p:78709,tN:LocalRunner.work_thread-2] check_pg(): No process found in process group 79120 +galaxy.jobs.runners.local DEBUG 2024-02-23 14:39:15,077 [pN:main.1,p:78709,tN:LocalRunner.work_thread-2] execution finished: /tmp/tmpqrlh6ih1/job_working_directory/000/3/galaxy_3.sh +galaxy.jobs DEBUG 2024-02-23 14:39:15,102 [pN:main.1,p:78709,tN:LocalRunner.work_thread-2] finish(): Moved /tmp/tmpqrlh6ih1/job_working_directory/000/3/outputs/dataset_baab9cb3-daf7-4634-b244-35ef4dfc423e.dat to /tmp/tmpqrlh6ih1/files/b/a/a/dataset_baab9cb3-daf7-4634-b244-35ef4dfc423e.dat +galaxy.jobs DEBUG 2024-02-23 14:39:15,102 [pN:main.1,p:78709,tN:LocalRunner.work_thread-2] finish(): Moved /tmp/tmpqrlh6ih1/job_working_directory/000/3/outputs/dataset_6151fe42-edab-4c01-b97a-3428cd1f28b4.dat to /tmp/tmpqrlh6ih1/files/6/1/5/dataset_6151fe42-edab-4c01-b97a-3428cd1f28b4.dat +galaxy.model.metadata DEBUG 2024-02-23 14:39:15,113 [pN:main.1,p:78709,tN:LocalRunner.work_thread-2] loading metadata from file for: HistoryDatasetAssociation 3 +galaxy.model.metadata DEBUG 2024-02-23 14:39:15,119 [pN:main.1,p:78709,tN:LocalRunner.work_thread-2] loading metadata from file for: HistoryDatasetAssociation 4 +galaxy.jobs DEBUG 2024-02-23 14:39:15,151 [pN:main.1,p:78709,tN:LocalRunner.work_thread-2] job_wrapper.finish for job 3 executed (54.675 ms) +uvicorn.access INFO 2024-02-23 14:39:17,599 [pN:main.1,p:78709,tN:MainThread] 127.0.0.1:46768 - "GET /api/entry_points?running=true HTTP/1.1" 200 +uvicorn.access INFO 2024-02-23 14:39:17,658 [pN:main.1,p:78709,tN:MainThread] 127.0.0.1:46768 - "GET /history/current_history_json?since=2024-02-23T19:38:35.000518 HTTP/1.1" 200 +uvicorn.access INFO 2024-02-23 14:39:17,696 [pN:main.1,p:78709,tN:MainThread] 127.0.0.1:46768 - "GET /api/histories/e94ef2b25ec88be9/contents?v=dev&limit=1000&q=update_time-ge&qv=2024-02-23T19:38:38.206Z HTTP/1.1" 200 +uvicorn.access INFO 2024-02-23 14:39:17,760 [pN:main.1,p:78709,tN:MainThread] 127.0.0.1:46768 - "GET /api/users/e94ef2b25ec88be9 HTTP/1.1" 200 +uvicorn.access INFO 2024-02-23 14:39:17,793 [pN:main.1,p:78709,tN:MainThread] 127.0.0.1:46772 - "GET /api/histories/e94ef2b25ec88be9/contents?v=dev&order=hid&offset=0&limit=100&q=deleted&qv=false&q=visible&qv=true HTTP/1.1" 200 +uvicorn.access INFO 2024-02-23 14:39:20,763 [pN:main.1,p:78709,tN:MainThread] 127.0.0.1:46780 - "GET /history/current_history_json?since=2024-02-23T19:39:15.000128 HTTP/1.1" 200 +uvicorn.access INFO 2024-02-23 14:39:22,402 [pN:main.1,p:78709,tN:MainThread] 127.0.0.1:46780 - "GET /api/datasets/b35bb5a57277f2b7?view=detailed HTTP/1.1" 200 +uvicorn.access INFO 2024-02-23 14:39:23,795 [pN:main.1,p:78709,tN:MainThread] 127.0.0.1:46780 - "GET /history/current_history_json?since=2024-02-23T19:39:15.000128 HTTP/1.1" 200 +uvicorn.access INFO 2024-02-23 14:39:26,829 [pN:main.1,p:78709,tN:MainThread] 127.0.0.1:58672 - "GET /history/current_history_json?since=2024-02-23T19:39:15.000128 HTTP/1.1" 200 +uvicorn.access INFO 2024-02-23 14:39:27,597 [pN:main.1,p:78709,tN:MainThread] 127.0.0.1:58672 - "GET /api/entry_points?running=true HTTP/1.1" 200 +galaxy.jobs.runners.util.process_groups DEBUG 2024-02-23 14:39:28,194 [pN:main.1,p:78709,tN:LocalRunner.work_thread-0] check_pg(): No process found in process group 79227 +galaxy.jobs.runners.local DEBUG 2024-02-23 14:39:28,195 [pN:main.1,p:78709,tN:LocalRunner.work_thread-0] execution finished: /tmp/tmpqrlh6ih1/job_working_directory/000/4/galaxy_4.sh +galaxy.jobs DEBUG 2024-02-23 14:39:28,221 [pN:main.1,p:78709,tN:LocalRunner.work_thread-0] finish(): Moved /tmp/tmpqrlh6ih1/job_working_directory/000/4/outputs/dataset_41844168-8b86-45ce-a8b8-c8552139307c.dat to /tmp/tmpqrlh6ih1/files/4/1/8/dataset_41844168-8b86-45ce-a8b8-c8552139307c.dat +galaxy.jobs DEBUG 2024-02-23 14:39:28,221 [pN:main.1,p:78709,tN:LocalRunner.work_thread-0] finish(): Moved /tmp/tmpqrlh6ih1/job_working_directory/000/4/outputs/dataset_41da1090-710e-4c25-9a3d-97472671c387.dat to /tmp/tmpqrlh6ih1/files/4/1/d/dataset_41da1090-710e-4c25-9a3d-97472671c387.dat +galaxy.jobs DEBUG 2024-02-23 14:39:28,221 [pN:main.1,p:78709,tN:LocalRunner.work_thread-0] finish(): Moved /tmp/tmpqrlh6ih1/job_working_directory/000/4/outputs/dataset_5c65272e-4fbd-4386-af7d-d8cbdd90242a.dat to /tmp/tmpqrlh6ih1/files/5/c/6/dataset_5c65272e-4fbd-4386-af7d-d8cbdd90242a.dat +galaxy.jobs DEBUG 2024-02-23 14:39:28,221 [pN:main.1,p:78709,tN:LocalRunner.work_thread-0] finish(): Moved /tmp/tmpqrlh6ih1/job_working_directory/000/4/outputs/dataset_92e5dc26-302e-4dbd-bd15-8050babfdff4.dat to /tmp/tmpqrlh6ih1/files/9/2/e/dataset_92e5dc26-302e-4dbd-bd15-8050babfdff4.dat +galaxy.model.metadata DEBUG 2024-02-23 14:39:28,232 [pN:main.1,p:78709,tN:LocalRunner.work_thread-0] loading metadata from file for: HistoryDatasetAssociation 5 +galaxy.model.metadata DEBUG 2024-02-23 14:39:28,236 [pN:main.1,p:78709,tN:LocalRunner.work_thread-0] loading metadata from file for: HistoryDatasetAssociation 6 +galaxy.model.metadata DEBUG 2024-02-23 14:39:28,239 [pN:main.1,p:78709,tN:LocalRunner.work_thread-0] loading metadata from file for: HistoryDatasetAssociation 7 +galaxy.model.metadata DEBUG 2024-02-23 14:39:28,263 [pN:main.1,p:78709,tN:LocalRunner.work_thread-0] loading metadata from file for: HistoryDatasetAssociation 8 +galaxy.jobs DEBUG 2024-02-23 14:39:28,325 [pN:main.1,p:78709,tN:LocalRunner.work_thread-0] job_wrapper.finish for job 4 executed (110.502 ms) +uvicorn.access INFO 2024-02-23 14:39:29,867 [pN:main.1,p:78709,tN:MainThread] 127.0.0.1:58686 - "GET /history/current_history_json?since=2024-02-23T19:39:15.000128 HTTP/1.1" 200 +uvicorn.access INFO 2024-02-23 14:39:29,913 [pN:main.1,p:78709,tN:MainThread] 127.0.0.1:58686 - "GET /api/histories/e94ef2b25ec88be9/contents?v=dev&limit=1000&q=update_time-ge&qv=2024-02-23T19:39:17.665Z&details=b35bb5a57277f2b7 HTTP/1.1" 200 +uvicorn.access INFO 2024-02-23 14:39:29,971 [pN:main.1,p:78709,tN:MainThread] 127.0.0.1:58686 - "GET /api/users/e94ef2b25ec88be9 HTTP/1.1" 200 +uvicorn.access INFO 2024-02-23 14:39:29,997 [pN:main.1,p:78709,tN:MainThread] 127.0.0.1:58700 - "GET /api/histories/e94ef2b25ec88be9/contents?v=dev&order=hid&offset=0&limit=100&q=deleted&qv=false&q=visible&qv=true HTTP/1.1" 200 +uvicorn.access INFO 2024-02-23 14:39:31,162 [pN:main.1,p:78709,tN:MainThread] 127.0.0.1:58700 - "GET /datasets/b35bb5a57277f2b7/display/?preview=True HTTP/1.1" 200 +uvicorn.access INFO 2024-02-23 14:39:31,188 [pN:main.1,p:78709,tN:MainThread] 127.0.0.1:58700 - "GET /static/dist/generic.bundled.js?v=1707855697000 HTTP/1.1" 200 +uvicorn.access INFO 2024-02-23 14:39:32,982 [pN:main.1,p:78709,tN:MainThread] 127.0.0.1:58700 - "GET /history/current_history_json?since=2024-02-23T19:39:28.000303 HTTP/1.1" 200 +uvicorn.access INFO 2024-02-23 14:39:36,015 [pN:main.1,p:78709,tN:MainThread] 127.0.0.1:44964 - "GET /history/current_history_json?since=2024-02-23T19:39:28.000303 HTTP/1.1" 200 +uvicorn.access INFO 2024-02-23 14:39:37,599 [pN:main.1,p:78709,tN:MainThread] 127.0.0.1:44964 - "GET /api/entry_points?running=true HTTP/1.1" 200 +uvicorn.access INFO 2024-02-23 14:39:39,044 [pN:main.1,p:78709,tN:MainThread] 127.0.0.1:44964 - "GET /history/current_history_json?since=2024-02-23T19:39:28.000303 HTTP/1.1" 200 +uvicorn.access INFO 2024-02-23 14:39:41,064 [pN:main.1,p:78709,tN:MainThread] 127.0.0.1:44964 - "GET /datasets/d6674a497e11acb0/display/?preview=True HTTP/1.1" 200 +uvicorn.access INFO 2024-02-23 14:39:42,071 [pN:main.1,p:78709,tN:MainThread] 127.0.0.1:44964 - "GET /history/current_history_json?since=2024-02-23T19:39:28.000303 HTTP/1.1" 200 +uvicorn.access INFO 2024-02-23 14:39:45,103 [pN:main.1,p:78709,tN:MainThread] 127.0.0.1:44972 - "GET /history/current_history_json?since=2024-02-23T19:39:28.000303 HTTP/1.1" 200 +uvicorn.access INFO 2024-02-23 14:39:47,604 [pN:main.1,p:78709,tN:MainThread] 127.0.0.1:45866 - "GET /api/entry_points?running=true HTTP/1.1" 200 +uvicorn.access INFO 2024-02-23 14:39:48,131 [pN:main.1,p:78709,tN:MainThread] 127.0.0.1:45866 - "GET /history/current_history_json?since=2024-02-23T19:39:28.000303 HTTP/1.1" 200 +uvicorn.access INFO 2024-02-23 14:39:51,163 [pN:main.1,p:78709,tN:MainThread] 127.0.0.1:45876 - "GET /history/current_history_json?since=2024-02-23T19:39:28.000303 HTTP/1.1" 200 +uvicorn.access INFO 2024-02-23 14:39:53,838 [pN:main.1,p:78709,tN:MainThread] 127.0.0.1:45888 - "GET /api/datasets/b35bb5a57277f2b7?view=detailed HTTP/1.1" 200 +/scratch/rico/galaxy/lib/galaxy/model/__init__.py:494: SAWarning: Dialect sqlite+pysqlite does *not* support Decimal objects natively, and SQLAlchemy must convert from floating point - rounding errors and other issues may occur. Please consider storing Decimal numbers as strings or integers on this platform for lossless storage. + return self.text_metrics + self.numeric_metrics +uvicorn.access INFO 2024-02-23 14:39:53,877 [pN:main.1,p:78709,tN:MainThread] 127.0.0.1:45888 - "GET /api/jobs/b35bb5a57277f2b7?full=True HTTP/1.1" 200 +uvicorn.access INFO 2024-02-23 14:39:54,036 [pN:main.1,p:78709,tN:MainThread] 127.0.0.1:45902 - "GET /api/datasets/b35bb5a57277f2b7/storage HTTP/1.1" 200 +uvicorn.access INFO 2024-02-23 14:39:54,048 [pN:main.1,p:78709,tN:MainThread] 127.0.0.1:45912 - "GET /api/datasets/b35bb5a57277f2b7/inheritance_chain HTTP/1.1" 200 +uvicorn.access INFO 2024-02-23 14:39:54,095 [pN:main.1,p:78709,tN:MainThread] 127.0.0.1:45940 - "GET /api/jobs/b35bb5a57277f2b7/destination_params HTTP/1.1" 200 +uvicorn.access INFO 2024-02-23 14:39:54,110 [pN:main.1,p:78709,tN:MainThread] 127.0.0.1:45924 - "GET /api/datasets/b35bb5a57277f2b7/metrics?hda_ldda=hda HTTP/1.1" 200 +uvicorn.access INFO 2024-02-23 14:39:54,133 [pN:main.1,p:78709,tN:MainThread] 127.0.0.1:45888 - "GET /api/datasets/b35bb5a57277f2b7/parameters_display?hda_ldda=hda HTTP/1.1" 200 +uvicorn.access INFO 2024-02-23 14:39:54,188 [pN:main.1,p:78709,tN:MainThread] 127.0.0.1:45912 - "GET /api/users/current/usage/__null__ HTTP/1.1" 200 +uvicorn.access INFO 2024-02-23 14:39:54,204 [pN:main.1,p:78709,tN:MainThread] 127.0.0.1:45952 - "GET /api/datasets/b35bb5a57277f2b7?view=detailed HTTP/1.1" 200 +uvicorn.access INFO 2024-02-23 14:39:54,229 [pN:main.1,p:78709,tN:MainThread] 127.0.0.1:45940 - "GET /history/current_history_json?since=2024-02-23T19:39:28.000303 HTTP/1.1" 200 +uvicorn.access INFO 2024-02-23 14:39:54,268 [pN:main.1,p:78709,tN:MainThread] 127.0.0.1:45902 - "GET /api/jobs/b35bb5a57277f2b7?full=True HTTP/1.1" 200 +uvicorn.access INFO 2024-02-23 14:39:54,315 [pN:main.1,p:78709,tN:MainThread] 127.0.0.1:45888 - "GET /api/datasets/a8266ce1f5b52ae6?view=detailed HTTP/1.1" 200 +uvicorn.access INFO 2024-02-23 14:39:54,324 [pN:main.1,p:78709,tN:MainThread] 127.0.0.1:45912 - "GET /api/configuration/decode/b35bb5a57277f2b7 HTTP/1.1" 200 +uvicorn.access INFO 2024-02-23 14:39:54,351 [pN:main.1,p:78709,tN:MainThread] 127.0.0.1:45940 - "GET /api/configuration/decode/e94ef2b25ec88be9 HTTP/1.1" 200 +uvicorn.access INFO 2024-02-23 14:39:54,358 [pN:main.1,p:78709,tN:MainThread] 127.0.0.1:45924 - "GET /api/datasets/d6674a497e11acb0?view=detailed HTTP/1.1" 200 +uvicorn.access INFO 2024-02-23 14:39:54,378 [pN:main.1,p:78709,tN:MainThread] 127.0.0.1:45952 - "GET /api/datasets/b35bb5a57277f2b7?view=detailed HTTP/1.1" 200 +uvicorn.access INFO 2024-02-23 14:39:54,381 [pN:main.1,p:78709,tN:MainThread] 127.0.0.1:45912 - "GET /api/configuration/decode/b35bb5a57277f2b7 HTTP/1.1" 200 +uvicorn.access INFO 2024-02-23 14:39:57,260 [pN:main.1,p:78709,tN:MainThread] 127.0.0.1:57798 - "GET /history/current_history_json?since=2024-02-23T19:39:28.000303 HTTP/1.1" 200 +uvicorn.access INFO 2024-02-23 14:39:57,600 [pN:main.1,p:78709,tN:MainThread] 127.0.0.1:57798 - "GET /api/entry_points?running=true HTTP/1.1" 200 +uvicorn.access INFO 2024-02-23 14:40:00,295 [pN:main.1,p:78709,tN:MainThread] 127.0.0.1:57804 - "GET /history/current_history_json?since=2024-02-23T19:39:28.000303 HTTP/1.1" 200 +uvicorn.access INFO 2024-02-23 14:40:03,324 [pN:main.1,p:78709,tN:MainThread] 127.0.0.1:57812 - "GET /history/current_history_json?since=2024-02-23T19:39:28.000303 HTTP/1.1" 200 +uvicorn.access INFO 2024-02-23 14:40:06,356 [pN:main.1,p:78709,tN:MainThread] 127.0.0.1:57264 - "GET /history/current_history_json?since=2024-02-23T19:39:28.000303 HTTP/1.1" 200 +uvicorn.access INFO 2024-02-23 14:40:07,601 [pN:main.1,p:78709,tN:MainThread] 127.0.0.1:57264 - "GET /api/entry_points?running=true HTTP/1.1" 200 +uvicorn.access INFO 2024-02-23 14:40:09,387 [pN:main.1,p:78709,tN:MainThread] 127.0.0.1:57264 - "GET /history/current_history_json?since=2024-02-23T19:39:28.000303 HTTP/1.1" 200 +uvicorn.access INFO 2024-02-23 14:40:10,214 [pN:main.1,p:78709,tN:MainThread] 127.0.0.1:57264 - "GET /api/datasets/d6674a497e11acb0?view=detailed HTTP/1.1" 200 +uvicorn.access INFO 2024-02-23 14:40:11,651 [pN:main.1,p:78709,tN:MainThread] 127.0.0.1:57264 - "GET /api/datasets/d6674a497e11acb0?view=detailed HTTP/1.1" 200 +uvicorn.access INFO 2024-02-23 14:40:11,722 [pN:main.1,p:78709,tN:MainThread] 127.0.0.1:57264 - "GET /api/jobs/b35bb5a57277f2b7?full=True HTTP/1.1" 200 +uvicorn.access INFO 2024-02-23 14:40:11,808 [pN:main.1,p:78709,tN:MainThread] 127.0.0.1:57286 - "GET /api/datasets/d6674a497e11acb0?view=detailed HTTP/1.1" 200 +uvicorn.access INFO 2024-02-23 14:40:11,849 [pN:main.1,p:78709,tN:MainThread] 127.0.0.1:57276 - "GET /api/datasets/d6674a497e11acb0/inheritance_chain HTTP/1.1" 200 +uvicorn.access INFO 2024-02-23 14:40:11,873 [pN:main.1,p:78709,tN:MainThread] 127.0.0.1:57268 - "GET /api/datasets/d6674a497e11acb0/storage HTTP/1.1" 200 +uvicorn.access INFO 2024-02-23 14:40:11,906 [pN:main.1,p:78709,tN:MainThread] 127.0.0.1:57302 - "GET /api/jobs/b35bb5a57277f2b7?full=True HTTP/1.1" 200 +uvicorn.access INFO 2024-02-23 14:40:11,921 [pN:main.1,p:78709,tN:MainThread] 127.0.0.1:57284 - "GET /api/datasets/d6674a497e11acb0/metrics?hda_ldda=hda HTTP/1.1" 200 +uvicorn.access INFO 2024-02-23 14:40:11,930 [pN:main.1,p:78709,tN:MainThread] 127.0.0.1:57286 - "GET /api/configuration/decode/d6674a497e11acb0 HTTP/1.1" 200 +uvicorn.access INFO 2024-02-23 14:40:11,934 [pN:main.1,p:78709,tN:MainThread] 127.0.0.1:57264 - "GET /api/datasets/d6674a497e11acb0/parameters_display?hda_ldda=hda HTTP/1.1" 200 +uvicorn.access INFO 2024-02-23 14:40:11,949 [pN:main.1,p:78709,tN:MainThread] 127.0.0.1:57276 - "GET /api/configuration/decode/e94ef2b25ec88be9 HTTP/1.1" 200 +uvicorn.access INFO 2024-02-23 14:40:11,985 [pN:main.1,p:78709,tN:MainThread] 127.0.0.1:57268 - "GET /api/users/current/usage/__null__ HTTP/1.1" 200 +uvicorn.access INFO 2024-02-23 14:40:11,986 [pN:main.1,p:78709,tN:MainThread] 127.0.0.1:57302 - "GET /api/configuration/decode/b35bb5a57277f2b7 HTTP/1.1" 200 +uvicorn.access INFO 2024-02-23 14:40:12,024 [pN:main.1,p:78709,tN:MainThread] 127.0.0.1:57284 - "GET /api/datasets/d6674a497e11acb0?view=detailed HTTP/1.1" 200 +uvicorn.access INFO 2024-02-23 14:40:12,056 [pN:main.1,p:78709,tN:MainThread] 127.0.0.1:57286 - "GET /api/datasets/b35bb5a57277f2b7?view=detailed HTTP/1.1" 200 +uvicorn.access INFO 2024-02-23 14:40:12,068 [pN:main.1,p:78709,tN:MainThread] 127.0.0.1:57264 - "GET /api/datasets/a8266ce1f5b52ae6?view=detailed HTTP/1.1" 200 +uvicorn.access INFO 2024-02-23 14:40:12,415 [pN:main.1,p:78709,tN:MainThread] 127.0.0.1:57264 - "GET /history/current_history_json?since=2024-02-23T19:39:28.000303 HTTP/1.1" 200 +uvicorn.access INFO 2024-02-23 14:40:15,446 [pN:main.1,p:78709,tN:MainThread] 127.0.0.1:57310 - "GET /history/current_history_json?since=2024-02-23T19:39:28.000303 HTTP/1.1" 200 +uvicorn.access INFO 2024-02-23 14:40:17,604 [pN:main.1,p:78709,tN:MainThread] 127.0.0.1:32830 - "GET /api/entry_points?running=true HTTP/1.1" 200 +uvicorn.access INFO 2024-02-23 14:40:18,476 [pN:main.1,p:78709,tN:MainThread] 127.0.0.1:32830 - "GET /history/current_history_json?since=2024-02-23T19:39:28.000303 HTTP/1.1" 200 +uvicorn.access INFO 2024-02-23 14:40:21,506 [pN:main.1,p:78709,tN:MainThread] 127.0.0.1:32842 - "GET /history/current_history_json?since=2024-02-23T19:39:28.000303 HTTP/1.1" 200 +uvicorn.access INFO 2024-02-23 14:40:24,543 [pN:main.1,p:78709,tN:MainThread] 127.0.0.1:32854 - "GET /history/current_history_json?since=2024-02-23T19:39:28.000303 HTTP/1.1" 200 +uvicorn.access INFO 2024-02-23 14:40:27,578 [pN:main.1,p:78709,tN:MainThread] 127.0.0.1:53704 - "GET /history/current_history_json?since=2024-02-23T19:39:28.000303 HTTP/1.1" 200 +uvicorn.access INFO 2024-02-23 14:40:27,607 [pN:main.1,p:78709,tN:MainThread] 127.0.0.1:53704 - "GET /api/entry_points?running=true HTTP/1.1" 200 +uvicorn.access INFO 2024-02-23 14:40:30,608 [pN:main.1,p:78709,tN:MainThread] 127.0.0.1:53716 - "GET /history/current_history_json?since=2024-02-23T19:39:28.000303 HTTP/1.1" 200 +uvicorn.access INFO 2024-02-23 14:40:31,252 [pN:main.1,p:78709,tN:MainThread] 127.0.0.1:53716 - "GET /api/tools/ncbi_fcs_adaptor/build?version=latest&tool_version=latest HTTP/1.1" 200 +uvicorn.access INFO 2024-02-23 14:40:31,362 [pN:main.1,p:78709,tN:MainThread] 127.0.0.1:53716 - "POST /api/tools/ncbi_fcs_adaptor/build HTTP/1.1" 200 +uvicorn.access INFO 2024-02-23 14:40:33,640 [pN:main.1,p:78709,tN:MainThread] 127.0.0.1:53728 - "GET /history/current_history_json?since=2024-02-23T19:39:28.000303 HTTP/1.1" 200 +uvicorn.access INFO 2024-02-23 14:40:36,669 [pN:main.1,p:78709,tN:MainThread] 127.0.0.1:59536 - "GET /history/current_history_json?since=2024-02-23T19:39:28.000303 HTTP/1.1" 200 +uvicorn.access INFO 2024-02-23 14:40:37,609 [pN:main.1,p:78709,tN:MainThread] 127.0.0.1:59536 - "GET /api/entry_points?running=true HTTP/1.1" 200 +uvicorn.access INFO 2024-02-23 14:40:37,724 [pN:main.1,p:78709,tN:MainThread] 127.0.0.1:59536 - "POST /api/tools/ncbi_fcs_adaptor/build HTTP/1.1" 200 +uvicorn.access INFO 2024-02-23 14:40:39,699 [pN:main.1,p:78709,tN:MainThread] 127.0.0.1:59536 - "GET /history/current_history_json?since=2024-02-23T19:39:28.000303 HTTP/1.1" 200 +uvicorn.access INFO 2024-02-23 14:40:42,730 [pN:main.1,p:78709,tN:MainThread] 127.0.0.1:59542 - "GET /history/current_history_json?since=2024-02-23T19:39:28.000303 HTTP/1.1" 200 +uvicorn.access INFO 2024-02-23 14:40:45,762 [pN:main.1,p:78709,tN:MainThread] 127.0.0.1:59192 - "GET /history/current_history_json?since=2024-02-23T19:39:28.000303 HTTP/1.1" 200 +uvicorn.access INFO 2024-02-23 14:40:47,611 [pN:main.1,p:78709,tN:MainThread] 127.0.0.1:59192 - "GET /api/entry_points?running=true HTTP/1.1" 200 +uvicorn.access INFO 2024-02-23 14:40:48,791 [pN:main.1,p:78709,tN:MainThread] 127.0.0.1:59192 - "GET /history/current_history_json?since=2024-02-23T19:39:28.000303 HTTP/1.1" 200 +uvicorn.access INFO 2024-02-23 14:40:51,823 [pN:main.1,p:78709,tN:MainThread] 127.0.0.1:59208 - "GET /history/current_history_json?since=2024-02-23T19:39:28.000303 HTTP/1.1" 200 +uvicorn.access INFO 2024-02-23 14:40:54,824 [pN:main.1,p:78709,tN:MainThread] 127.0.0.1:59214 - "GET /datasets/4aa1fa05efd4b363/display/?preview=True HTTP/1.1" 200 +uvicorn.access INFO 2024-02-23 14:40:54,850 [pN:main.1,p:78709,tN:MainThread] 127.0.0.1:59214 - "GET /history/current_history_json?since=2024-02-23T19:39:28.000303 HTTP/1.1" 200 +uvicorn.access INFO 2024-02-23 14:40:57,213 [pN:main.1,p:78709,tN:MainThread] 127.0.0.1:49028 - "GET /datasets/9d64888131bc67e9/display/?preview=True HTTP/1.1" 200 +uvicorn.access INFO 2024-02-23 14:40:57,732 [pN:main.1,p:78709,tN:MainThread] 127.0.0.1:49028 - "GET /api/entry_points?running=true HTTP/1.1" 200 +uvicorn.access INFO 2024-02-23 14:40:57,924 [pN:main.1,p:78709,tN:MainThread] 127.0.0.1:49028 - "GET /history/current_history_json?since=2024-02-23T19:39:28.000303 HTTP/1.1" 200 +uvicorn.access INFO 2024-02-23 14:41:00,329 [pN:main.1,p:78709,tN:MainThread] 127.0.0.1:49040 - "GET /datasets/e331579530f91b88/display/?preview=True HTTP/1.1" 200 +uvicorn.access INFO 2024-02-23 14:41:00,952 [pN:main.1,p:78709,tN:MainThread] 127.0.0.1:49040 - "GET /history/current_history_json?since=2024-02-23T19:39:28.000303 HTTP/1.1" 200 +uvicorn.access INFO 2024-02-23 14:41:03,981 [pN:main.1,p:78709,tN:MainThread] 127.0.0.1:49054 - "GET /history/current_history_json?since=2024-02-23T19:39:28.000303 HTTP/1.1" 200 +uvicorn.access INFO 2024-02-23 14:41:05,964 [pN:main.1,p:78709,tN:MainThread] 127.0.0.1:49054 - "GET /api/datasets/9a32e5e3a6abd4e7?view=detailed HTTP/1.1" 200 +uvicorn.access INFO 2024-02-23 14:41:07,016 [pN:main.1,p:78709,tN:MainThread] 127.0.0.1:49054 - "GET /history/current_history_json?since=2024-02-23T19:39:28.000303 HTTP/1.1" 200 +uvicorn.access INFO 2024-02-23 14:41:07,728 [pN:main.1,p:78709,tN:MainThread] 127.0.0.1:49054 - "GET /api/entry_points?running=true HTTP/1.1" 200 +uvicorn.access INFO 2024-02-23 14:41:08,614 [pN:main.1,p:78709,tN:MainThread] 127.0.0.1:49054 - "GET /datasets/9a32e5e3a6abd4e7/display/?preview=True HTTP/1.1" 200 +uvicorn.access INFO 2024-02-23 14:41:10,059 [pN:main.1,p:78709,tN:MainThread] 127.0.0.1:49054 - "GET /history/current_history_json?since=2024-02-23T19:39:28.000303 HTTP/1.1" 200 +uvicorn.access INFO 2024-02-23 14:41:11,938 [pN:main.1,p:78709,tN:MainThread] 127.0.0.1:49054 - "GET /api/datasets/9a32e5e3a6abd4e7?view=detailed HTTP/1.1" 200 +uvicorn.access INFO 2024-02-23 14:41:11,976 [pN:main.1,p:78709,tN:MainThread] 127.0.0.1:49054 - "GET /api/jobs/d6674a497e11acb0?full=True HTTP/1.1" 200 +uvicorn.access INFO 2024-02-23 14:41:12,059 [pN:main.1,p:78709,tN:MainThread] 127.0.0.1:49054 - "GET /api/datasets/9a32e5e3a6abd4e7/parameters_display?hda_ldda=hda HTTP/1.1" 200 +uvicorn.access INFO 2024-02-23 14:41:12,119 [pN:main.1,p:78709,tN:MainThread] 127.0.0.1:59504 - "GET /api/datasets/9a32e5e3a6abd4e7/metrics?hda_ldda=hda HTTP/1.1" 200 +uvicorn.access INFO 2024-02-23 14:41:12,132 [pN:main.1,p:78709,tN:MainThread] 127.0.0.1:59496 - "GET /api/datasets/9a32e5e3a6abd4e7/inheritance_chain HTTP/1.1" 200 +uvicorn.access INFO 2024-02-23 14:41:12,146 [pN:main.1,p:78709,tN:MainThread] 127.0.0.1:59492 - "GET /api/datasets/9a32e5e3a6abd4e7/storage HTTP/1.1" 200 +uvicorn.access INFO 2024-02-23 14:41:12,166 [pN:main.1,p:78709,tN:MainThread] 127.0.0.1:59514 - "GET /api/jobs/d6674a497e11acb0/destination_params HTTP/1.1" 200 +uvicorn.access INFO 2024-02-23 14:41:12,244 [pN:main.1,p:78709,tN:MainThread] 127.0.0.1:59516 - "GET /api/datasets/9a32e5e3a6abd4e7?view=detailed HTTP/1.1" 200 +uvicorn.access INFO 2024-02-23 14:41:12,269 [pN:main.1,p:78709,tN:MainThread] 127.0.0.1:49054 - "GET /api/jobs/d6674a497e11acb0?full=True HTTP/1.1" 200 +uvicorn.access INFO 2024-02-23 14:41:12,363 [pN:main.1,p:78709,tN:MainThread] 127.0.0.1:59504 - "GET /api/datasets/a8266ce1f5b52ae6?view=detailed HTTP/1.1" 200 +uvicorn.access INFO 2024-02-23 14:41:12,389 [pN:main.1,p:78709,tN:MainThread] 127.0.0.1:59516 - "GET /api/users/current/usage/__null__ HTTP/1.1" 200 +uvicorn.access INFO 2024-02-23 14:41:12,401 [pN:main.1,p:78709,tN:MainThread] 127.0.0.1:59496 - "GET /api/datasets/4aa1fa05efd4b363?view=detailed HTTP/1.1" 200 +uvicorn.access INFO 2024-02-23 14:41:12,418 [pN:main.1,p:78709,tN:MainThread] 127.0.0.1:59514 - "GET /api/datasets/e331579530f91b88?view=detailed HTTP/1.1" 200 +uvicorn.access INFO 2024-02-23 14:41:12,419 [pN:main.1,p:78709,tN:MainThread] 127.0.0.1:59492 - "GET /api/datasets/9d64888131bc67e9?view=detailed HTTP/1.1" 200 +uvicorn.access INFO 2024-02-23 14:41:12,465 [pN:main.1,p:78709,tN:MainThread] 127.0.0.1:49054 - "GET /api/datasets/9a32e5e3a6abd4e7?view=detailed HTTP/1.1" 200 +uvicorn.access INFO 2024-02-23 14:41:12,474 [pN:main.1,p:78709,tN:MainThread] 127.0.0.1:59504 - "GET /api/configuration/decode/9a32e5e3a6abd4e7 HTTP/1.1" 200 +uvicorn.access INFO 2024-02-23 14:41:12,483 [pN:main.1,p:78709,tN:MainThread] 127.0.0.1:59516 - "GET /api/configuration/decode/e94ef2b25ec88be9 HTTP/1.1" 200 +uvicorn.access INFO 2024-02-23 14:41:12,486 [pN:main.1,p:78709,tN:MainThread] 127.0.0.1:59496 - "GET /api/configuration/decode/d6674a497e11acb0 HTTP/1.1" 200 +uvicorn.access INFO 2024-02-23 14:41:13,090 [pN:main.1,p:78709,tN:MainThread] 127.0.0.1:59496 - "GET /history/current_history_json?since=2024-02-23T19:39:28.000303 HTTP/1.1" 200 +uvicorn.access INFO 2024-02-23 14:41:16,123 [pN:main.1,p:78709,tN:MainThread] 127.0.0.1:53300 - "GET /history/current_history_json?since=2024-02-23T19:39:28.000303 HTTP/1.1" 200 +uvicorn.access INFO 2024-02-23 14:41:17,732 [pN:main.1,p:78709,tN:MainThread] 127.0.0.1:53300 - "GET /api/entry_points?running=true HTTP/1.1" 200 +uvicorn.access INFO 2024-02-23 14:41:19,153 [pN:main.1,p:78709,tN:MainThread] 127.0.0.1:53300 - "GET /history/current_history_json?since=2024-02-23T19:39:28.000303 HTTP/1.1" 200 +uvicorn.access INFO 2024-02-23 14:41:19,907 [pN:main.1,p:78709,tN:MainThread] 127.0.0.1:53300 - "GET /datasets/9a32e5e3a6abd4e7/display/?preview=True HTTP/1.1" 200 +uvicorn.access INFO 2024-02-23 14:41:22,005 [pN:main.1,p:78709,tN:MainThread] 127.0.0.1:53304 - "GET /api/datasets/9a32e5e3a6abd4e7?view=detailed HTTP/1.1" 200 +uvicorn.access INFO 2024-02-23 14:41:22,037 [pN:main.1,p:78709,tN:MainThread] 127.0.0.1:53304 - "GET /api/jobs/d6674a497e11acb0?full=True HTTP/1.1" 200 +uvicorn.access INFO 2024-02-23 14:41:22,141 [pN:main.1,p:78709,tN:MainThread] 127.0.0.1:53304 - "GET /api/datasets/9a32e5e3a6abd4e7/parameters_display?hda_ldda=hda HTTP/1.1" 200 +uvicorn.access INFO 2024-02-23 14:41:22,162 [pN:main.1,p:78709,tN:MainThread] 127.0.0.1:53318 - "GET /api/datasets/9a32e5e3a6abd4e7/inheritance_chain HTTP/1.1" 200 +uvicorn.access INFO 2024-02-23 14:41:22,168 [pN:main.1,p:78709,tN:MainThread] 127.0.0.1:53306 - "GET /api/datasets/9a32e5e3a6abd4e7/storage HTTP/1.1" 200 +uvicorn.access INFO 2024-02-23 14:41:22,200 [pN:main.1,p:78709,tN:MainThread] 127.0.0.1:53332 - "GET /api/jobs/d6674a497e11acb0?full=True HTTP/1.1" 200 +uvicorn.access INFO 2024-02-23 14:41:22,233 [pN:main.1,p:78709,tN:MainThread] 127.0.0.1:53324 - "GET /api/datasets/9a32e5e3a6abd4e7?view=detailed HTTP/1.1" 200 +uvicorn.access INFO 2024-02-23 14:41:22,250 [pN:main.1,p:78709,tN:MainThread] 127.0.0.1:53332 - "GET /history/current_history_json?since=2024-02-23T19:39:28.000303 HTTP/1.1" 200 +uvicorn.access INFO 2024-02-23 14:41:22,324 [pN:main.1,p:78709,tN:MainThread] 127.0.0.1:53306 - "GET /api/datasets/e331579530f91b88?view=detailed HTTP/1.1" 200 +uvicorn.access INFO 2024-02-23 14:41:22,358 [pN:main.1,p:78709,tN:MainThread] 127.0.0.1:53324 - "GET /api/users/current/usage/__null__ HTTP/1.1" 200 +uvicorn.access INFO 2024-02-23 14:41:22,377 [pN:main.1,p:78709,tN:MainThread] 127.0.0.1:53332 - "GET /api/configuration/decode/d6674a497e11acb0 HTTP/1.1" 200 +uvicorn.access INFO 2024-02-23 14:41:22,397 [pN:main.1,p:78709,tN:MainThread] 127.0.0.1:53348 - "GET /api/datasets/4aa1fa05efd4b363?view=detailed HTTP/1.1" 200 +uvicorn.access INFO 2024-02-23 14:41:22,410 [pN:main.1,p:78709,tN:MainThread] 127.0.0.1:53318 - "GET /api/datasets/9d64888131bc67e9?view=detailed HTTP/1.1" 200 +uvicorn.access INFO 2024-02-23 14:41:22,424 [pN:main.1,p:78709,tN:MainThread] 127.0.0.1:53304 - "GET /api/datasets/a8266ce1f5b52ae6?view=detailed HTTP/1.1" 200 +uvicorn.access INFO 2024-02-23 14:41:22,456 [pN:main.1,p:78709,tN:MainThread] 127.0.0.1:53332 - "GET /api/configuration/decode/e94ef2b25ec88be9 HTTP/1.1" 200 +uvicorn.access INFO 2024-02-23 14:41:22,462 [pN:main.1,p:78709,tN:MainThread] 127.0.0.1:53324 - "GET /api/configuration/decode/9a32e5e3a6abd4e7 HTTP/1.1" 200 +uvicorn.access INFO 2024-02-23 14:41:22,468 [pN:main.1,p:78709,tN:MainThread] 127.0.0.1:53306 - "GET /api/datasets/9a32e5e3a6abd4e7?view=detailed HTTP/1.1" 200 +uvicorn.access INFO 2024-02-23 14:41:25,288 [pN:main.1,p:78709,tN:MainThread] 127.0.0.1:53356 - "GET /history/current_history_json?since=2024-02-23T19:39:28.000303 HTTP/1.1" 200 +uvicorn.access INFO 2024-02-23 14:41:27,733 [pN:main.1,p:78709,tN:MainThread] 127.0.0.1:58944 - "GET /api/entry_points?running=true HTTP/1.1" 200 +uvicorn.access INFO 2024-02-23 14:41:28,315 [pN:main.1,p:78709,tN:MainThread] 127.0.0.1:58944 - "GET /history/current_history_json?since=2024-02-23T19:39:28.000303 HTTP/1.1" 200 +uvicorn.access INFO 2024-02-23 14:41:32,216 [pN:main.1,p:78709,tN:MainThread] 127.0.0.1:58948 - "GET /history/current_history_json?since=2024-02-23T19:39:28.000303 HTTP/1.1" 200 + +==> /tmp/tmpqrlh6ih1/gravity/log/celery-beat.log <== +[2024-02-23 14:41:34,178: DEBUG/MainProcess] beat: Synchronizing schedule... +[2024-02-23 14:41:34,179: INFO/MainProcess] Scheduler: Sending due task clean-object-store-caches (galaxy.clean_object_store_caches) +[2024-02-23 14:41:34,195: DEBUG/MainProcess] galaxy.clean_object_store_caches sent. id->f5e83b64-c60a-4621-bc5d-a6516ea91ec9 +[2024-02-23 14:41:34,196: DEBUG/MainProcess] beat: Waking up in 5.00 minutes. + +==> /tmp/tmpqrlh6ih1/gravity/log/celery.log <== +[2024-02-23 14:41:35,030: INFO/main] Task galaxy.clean_object_store_caches[f5e83b64-c60a-4621-bc5d-a6516ea91ec9] received +[2024-02-23 14:41:35,031: DEBUG/main] TaskPool: Apply <function fast_trace_task at 0x7f9f1756ed90> (args:('galaxy.clean_object_store_caches', 'f5e83b64-c60a-4621-bc5d-a6516ea91ec9', {'lang': 'py', 'task': 'galaxy.clean_object_store_caches', 'id': 'f5e83b64-c60a-4621-bc5d-a6516ea91ec9', 'shadow': None, 'eta': None, 'expires': None, 'group': None, 'group_index': None, 'retries': 0, 'timelimit': [None, None], 'root_id': 'f5e83b64-c60a-4621-bc5d-a6516ea91ec9', 'parent_id': None, 'argsrepr': '()', 'kwargsrepr': '{}', 'origin': 'gen78504@laila', 'ignore_result': False, 'properties': {'correlation_id': 'f5e83b64-c60a-4621-bc5d-a6516ea91ec9', 'reply_to': 'a834fe8d-fc9c-31a2-9791-be846a6fc4af', 'delivery_mode': 2, 'delivery_info': {'exchange': '', 'routing_key': 'galaxy.internal'}, 'priority': 0, 'body_encoding': 'base64', 'delivery_tag': '52a407fc-3529-4119-bd33-a501e38607aa'}, 'reply_to': 'a834fe8d-fc9c-31a2-9791-be846a6fc4af', 'correlation_id': 'f5e83b64-c60a-4621-bc5d-a6516ea91ec9', 'hostname': 'celery@laila', 'delivery_info': {'exchange': '', 'routing_key': 'galaxy.internal', 'priority': 0, 'redelivered': None},... kwargs:{}) +[2024-02-23 14:41:35,033: INFO/main] Successfully executed Celery task clean_object_store_caches to prune object store cache directories clean_object_store_caches to prune object store cache directories (0.532 ms) +[2024-02-23 14:41:35,034: INFO/main] Task galaxy.clean_object_store_caches[f5e83b64-c60a-4621-bc5d-a6516ea91ec9] succeeded in 0.0018830089829862118s: None + +==> /tmp/tmpqrlh6ih1/gravity/log/gunicorn.log <== +uvicorn.access INFO 2024-02-23 14:41:38,212 [pN:main.1,p:78709,tN:MainThread] 127.0.0.1:54156 - "GET /api/entry_points?running=true HTTP/1.1" 200 +uvicorn.access INFO 2024-02-23 14:41:48,216 [pN:main.1,p:78709,tN:MainThread] 127.0.0.1:53112 - "GET /api/entry_points?running=true HTTP/1.1" 200 +uvicorn.access INFO 2024-02-23 14:41:59,218 [pN:main.1,p:78709,tN:MainThread] 127.0.0.1:47208 - "GET /api/entry_points?running=true HTTP/1.1" 200 +uvicorn.access INFO 2024-02-23 14:42:07,092 [pN:main.1,p:78709,tN:MainThread] 127.0.0.1:38240 - "GET /history/current_history_json?since=2024-02-23T19:39:28.000303 HTTP/1.1" 200 +uvicorn.access INFO 2024-02-23 14:42:09,213 [pN:main.1,p:78709,tN:MainThread] 127.0.0.1:38256 - "GET /api/entry_points?running=true HTTP/1.1" 200 +uvicorn.access INFO 2024-02-23 14:42:10,121 [pN:main.1,p:78709,tN:MainThread] 127.0.0.1:38256 - "GET /history/current_history_json?since=2024-02-23T19:39:28.000303 HTTP/1.1" 200 +uvicorn.access INFO 2024-02-23 14:42:11,819 [pN:main.1,p:78709,tN:MainThread] 127.0.0.1:38256 - "GET /api/tools/ncbi_fcs_adaptor/build?version=latest&tool_version=latest HTTP/1.1" 200 +uvicorn.access INFO 2024-02-23 14:42:11,910 [pN:main.1,p:78709,tN:MainThread] 127.0.0.1:38256 - "POST /api/tools/ncbi_fcs_adaptor/build HTTP/1.1" 200 +uvicorn.access INFO 2024-02-23 14:42:13,151 [pN:main.1,p:78709,tN:MainThread] 127.0.0.1:38256 - "GET /history/current_history_json?since=2024-02-23T19:39:28.000303 HTTP/1.1" 200 +uvicorn.access INFO 2024-02-23 14:42:16,179 [pN:main.1,p:78709,tN:MainThread] 127.0.0.1:40396 - "GET /history/current_history_json?since=2024-02-23T19:39:28.000303 HTTP/1.1" 200 +uvicorn.access INFO 2024-02-23 14:42:19,211 [pN:main.1,p:78709,tN:MainThread] 127.0.0.1:40404 - "GET /history/current_history_json?since=2024-02-23T19:39:28.000303 HTTP/1.1" 200 +uvicorn.access INFO 2024-02-23 14:42:19,221 [pN:main.1,p:78709,tN:MainThread] 127.0.0.1:40416 - "GET /api/entry_points?running=true HTTP/1.1" 200 +uvicorn.access INFO 2024-02-23 14:42:21,206 [pN:main.1,p:78709,tN:MainThread] 127.0.0.1:40416 - "POST /api/tools/ncbi_fcs_adaptor/build HTTP/1.1" 200 +uvicorn.access INFO 2024-02-23 14:42:22,239 [pN:main.1,p:78709,tN:MainThread] 127.0.0.1:40416 - "GET /history/current_history_json?since=2024-02-23T19:39:28.000303 HTTP/1.1" 200 +uvicorn.access INFO 2024-02-23 14:42:25,268 [pN:main.1,p:78709,tN:MainThread] 127.0.0.1:40428 - "GET /history/current_history_json?since=2024-02-23T19:39:28.000303 HTTP/1.1" 200 +uvicorn.access INFO 2024-02-23 14:42:28,299 [pN:main.1,p:78709,tN:MainThread] 127.0.0.1:54006 - "GET /history/current_history_json?since=2024-02-23T19:39:28.000303 HTTP/1.1" 200 +uvicorn.access INFO 2024-02-23 14:42:29,216 [pN:main.1,p:78709,tN:MainThread] 127.0.0.1:54006 - "GET /api/entry_points?running=true HTTP/1.1" 200 +uvicorn.access INFO 2024-02-23 14:42:31,328 [pN:main.1,p:78709,tN:MainThread] 127.0.0.1:54008 - "GET /history/current_history_json?since=2024-02-23T19:39:28.000303 HTTP/1.1" 200 +uvicorn.access INFO 2024-02-23 14:42:34,358 [pN:main.1,p:78709,tN:MainThread] 127.0.0.1:54024 - "GET /history/current_history_json?since=2024-02-23T19:39:28.000303 HTTP/1.1" 200 +uvicorn.access INFO 2024-02-23 14:42:37,390 [pN:main.1,p:78709,tN:MainThread] 127.0.0.1:60548 - "GET /history/current_history_json?since=2024-02-23T19:39:28.000303 HTTP/1.1" 200 +uvicorn.access INFO 2024-02-23 14:42:39,218 [pN:main.1,p:78709,tN:MainThread] 127.0.0.1:60548 - "GET /api/entry_points?running=true HTTP/1.1" 200 +uvicorn.access INFO 2024-02-23 14:42:40,419 [pN:main.1,p:78709,tN:MainThread] 127.0.0.1:60548 - "GET /history/current_history_json?since=2024-02-23T19:39:28.000303 HTTP/1.1" 200 +uvicorn.access INFO 2024-02-23 14:42:43,450 [pN:main.1,p:78709,tN:MainThread] 127.0.0.1:60564 - "GET /history/current_history_json?since=2024-02-23T19:39:28.000303 HTTP/1.1" 200 +uvicorn.access INFO 2024-02-23 14:42:46,483 [pN:main.1,p:78709,tN:MainThread] 127.0.0.1:59152 - "GET /history/current_history_json?since=2024-02-23T19:39:28.000303 HTTP/1.1" 200 +uvicorn.access INFO 2024-02-23 14:42:50,223 [pN:main.1,p:78709,tN:MainThread] 127.0.0.1:59156 - "GET /api/entry_points?running=true HTTP/1.1" 200 +uvicorn.access INFO 2024-02-23 14:42:50,226 [pN:main.1,p:78709,tN:MainThread] 127.0.0.1:59160 - "GET /history/current_history_json?since=2024-02-23T19:39:28.000303 HTTP/1.1" 200 +uvicorn.access INFO 2024-02-23 14:43:00,219 [pN:main.1,p:78709,tN:MainThread] 127.0.0.1:35248 - "GET /api/entry_points?running=true HTTP/1.1" 200 +uvicorn.access INFO 2024-02-23 14:43:10,212 [pN:main.1,p:78709,tN:MainThread] 127.0.0.1:51892 - "GET /api/entry_points?running=true HTTP/1.1" 200 +uvicorn.access INFO 2024-02-23 14:43:21,208 [pN:main.1,p:78709,tN:MainThread] 127.0.0.1:47266 - "GET /api/entry_points?running=true HTTP/1.1" 200 +uvicorn.access INFO 2024-02-23 14:43:31,217 [pN:main.1,p:78709,tN:MainThread] 127.0.0.1:56258 - "GET /api/entry_points?running=true HTTP/1.1" 200 +uvicorn.access INFO 2024-02-23 14:43:41,211 [pN:main.1,p:78709,tN:MainThread] 127.0.0.1:45128 - "GET /api/entry_points?running=true HTTP/1.1" 200 +uvicorn.access INFO 2024-02-23 14:43:51,208 [pN:main.1,p:78709,tN:MainThread] 127.0.0.1:53190 - "GET /history/current_history_json?since=2024-02-23T19:39:28.000303 HTTP/1.1" 200 +uvicorn.access INFO 2024-02-23 14:44:03,211 [pN:main.1,p:78709,tN:MainThread] 127.0.0.1:44558 - "GET /api/entry_points?running=true HTTP/1.1" 200 +uvicorn.access INFO 2024-02-23 14:44:21,108 [pN:main.1,p:78709,tN:MainThread] 127.0.0.1:35914 - "GET /history/current_history_json?since=2024-02-23T19:39:28.000303 HTTP/1.1" 200 +uvicorn.access INFO 2024-02-23 14:44:21,111 [pN:main.1,p:78709,tN:MainThread] 127.0.0.1:35922 - "GET /api/entry_points?running=true HTTP/1.1" 200 +uvicorn.access INFO 2024-02-23 14:44:24,142 [pN:main.1,p:78709,tN:MainThread] 127.0.0.1:35934 - "GET /history/current_history_json?since=2024-02-23T19:39:28.000303 HTTP/1.1" 200 +uvicorn.access INFO 2024-02-23 14:44:27,170 [pN:main.1,p:78709,tN:MainThread] 127.0.0.1:46974 - "GET /history/current_history_json?since=2024-02-23T19:39:28.000303 HTTP/1.1" 200 +uvicorn.access INFO 2024-02-23 14:44:30,199 [pN:main.1,p:78709,tN:MainThread] 127.0.0.1:46978 - "GET /history/current_history_json?since=2024-02-23T19:39:28.000303 HTTP/1.1" 200 +uvicorn.access INFO 2024-02-23 14:44:31,076 [pN:main.1,p:78709,tN:MainThread] 127.0.0.1:46978 - "GET /api/entry_points?running=true HTTP/1.1" 200 +uvicorn.access INFO 2024-02-23 14:44:33,228 [pN:main.1,p:78709,tN:MainThread] 127.0.0.1:46980 - "GET /history/current_history_json?since=2024-02-23T19:39:28.000303 HTTP/1.1" 200 +uvicorn.access INFO 2024-02-23 14:44:36,257 [pN:main.1,p:78709,tN:MainThread] 127.0.0.1:59440 - "GET /history/current_history_json?since=2024-02-23T19:39:28.000303 HTTP/1.1" 200 +uvicorn.access INFO 2024-02-23 14:44:39,287 [pN:main.1,p:78709,tN:MainThread] 127.0.0.1:59442 - "GET /history/current_history_json?since=2024-02-23T19:39:28.000303 HTTP/1.1" 200 +uvicorn.access INFO 2024-02-23 14:44:41,080 [pN:main.1,p:78709,tN:MainThread] 127.0.0.1:59442 - "GET /api/entry_points?running=true HTTP/1.1" 200 +uvicorn.access INFO 2024-02-23 14:44:42,325 [pN:main.1,p:78709,tN:MainThread] 127.0.0.1:59442 - "GET /history/current_history_json?since=2024-02-23T19:39:28.000303 HTTP/1.1" 200 +uvicorn.access INFO 2024-02-23 14:44:45,358 [pN:main.1,p:78709,tN:MainThread] 127.0.0.1:59446 - "GET /history/current_history_json?since=2024-02-23T19:39:28.000303 HTTP/1.1" 200 +uvicorn.access INFO 2024-02-23 14:44:48,387 [pN:main.1,p:78709,tN:MainThread] 127.0.0.1:33128 - "GET /history/current_history_json?since=2024-02-23T19:39:28.000303 HTTP/1.1" 200 +uvicorn.access INFO 2024-02-23 14:44:51,081 [pN:main.1,p:78709,tN:MainThread] 127.0.0.1:33136 - "GET /api/entry_points?running=true HTTP/1.1" 200 +uvicorn.access INFO 2024-02-23 14:44:51,415 [pN:main.1,p:78709,tN:MainThread] 127.0.0.1:33136 - "GET /history/current_history_json?since=2024-02-23T19:39:28.000303 HTTP/1.1" 200 +uvicorn.access INFO 2024-02-23 14:44:54,446 [pN:main.1,p:78709,tN:MainThread] 127.0.0.1:33146 - "GET /history/current_history_json?since=2024-02-23T19:39:28.000303 HTTP/1.1" 200 +uvicorn.access INFO 2024-02-23 14:44:57,476 [pN:main.1,p:78709,tN:MainThread] 127.0.0.1:59288 - "GET /history/current_history_json?since=2024-02-23T19:39:28.000303 HTTP/1.1" 200 +uvicorn.access INFO 2024-02-23 14:45:00,507 [pN:main.1,p:78709,tN:MainThread] 127.0.0.1:59292 - "GET /history/current_history_json?since=2024-02-23T19:39:28.000303 HTTP/1.1" 200 +uvicorn.access INFO 2024-02-23 14:45:01,083 [pN:main.1,p:78709,tN:MainThread] 127.0.0.1:59292 - "GET /api/entry_points?running=true HTTP/1.1" 200 +uvicorn.access INFO 2024-02-23 14:45:03,547 [pN:main.1,p:78709,tN:MainThread] 127.0.0.1:59304 - "GET /history/current_history_json?since=2024-02-23T19:39:28.000303 HTTP/1.1" 200 +uvicorn.access INFO 2024-02-23 14:45:06,581 [pN:main.1,p:78709,tN:MainThread] 127.0.0.1:50814 - "GET /history/current_history_json?since=2024-02-23T19:39:28.000303 HTTP/1.1" 200 +uvicorn.access INFO 2024-02-23 14:45:09,611 [pN:main.1,p:78709,tN:MainThread] 127.0.0.1:50820 - "GET /history/current_history_json?since=2024-02-23T19:39:28.000303 HTTP/1.1" 200 +uvicorn.access INFO 2024-02-23 14:45:11,084 [pN:main.1,p:78709,tN:MainThread] 127.0.0.1:50820 - "GET /api/entry_points?running=true HTTP/1.1" 200 +uvicorn.access INFO 2024-02-23 14:45:12,643 [pN:main.1,p:78709,tN:MainThread] 127.0.0.1:50820 - "GET /history/current_history_json?since=2024-02-23T19:39:28.000303 HTTP/1.1" 200 +uvicorn.access INFO 2024-02-23 14:45:15,672 [pN:main.1,p:78709,tN:MainThread] 127.0.0.1:55644 - "GET /history/current_history_json?since=2024-02-23T19:39:28.000303 HTTP/1.1" 200 +uvicorn.access INFO 2024-02-23 14:45:18,702 [pN:main.1,p:78709,tN:MainThread] 127.0.0.1:55654 - "GET /history/current_history_json?since=2024-02-23T19:39:28.000303 HTTP/1.1" 200 +uvicorn.access INFO 2024-02-23 14:45:21,086 [pN:main.1,p:78709,tN:MainThread] 127.0.0.1:55666 - "GET /api/entry_points?running=true HTTP/1.1" 200 +uvicorn.access INFO 2024-02-23 14:45:21,730 [pN:main.1,p:78709,tN:MainThread] 127.0.0.1:55666 - "GET /history/current_history_json?since=2024-02-23T19:39:28.000303 HTTP/1.1" 200 +uvicorn.access INFO 2024-02-23 14:45:25,210 [pN:main.1,p:78709,tN:MainThread] 127.0.0.1:55680 - "GET /history/current_history_json?since=2024-02-23T19:39:28.000303 HTTP/1.1" 200 +uvicorn.access INFO 2024-02-23 14:45:26,488 [pN:main.1,p:78709,tN:MainThread] 127.0.0.1:55680 - "GET /history/current_history_json?since=2024-02-23T19:39:28.000303 HTTP/1.1" 200 +uvicorn.access INFO 2024-02-23 14:45:29,524 [pN:main.1,p:78709,tN:MainThread] 127.0.0.1:43894 - "GET /history/current_history_json?since=2024-02-23T19:39:28.000303 HTTP/1.1" 200 +uvicorn.access INFO 2024-02-23 14:45:31,088 [pN:main.1,p:78709,tN:MainThread] 127.0.0.1:43894 - "GET /api/entry_points?running=true HTTP/1.1" 200 +uvicorn.access INFO 2024-02-23 14:45:32,554 [pN:main.1,p:78709,tN:MainThread] 127.0.0.1:43894 - "GET /history/current_history_json?since=2024-02-23T19:39:28.000303 HTTP/1.1" 200 +uvicorn.access INFO 2024-02-23 14:45:35,586 [pN:main.1,p:78709,tN:MainThread] 127.0.0.1:43896 - "GET /history/current_history_json?since=2024-02-23T19:39:28.000303 HTTP/1.1" 200 +uvicorn.access INFO 2024-02-23 14:45:38,615 [pN:main.1,p:78709,tN:MainThread] 127.0.0.1:60812 - "GET /history/current_history_json?since=2024-02-23T19:39:28.000303 HTTP/1.1" 200 +uvicorn.access INFO 2024-02-23 14:45:41,108 [pN:main.1,p:78709,tN:MainThread] 127.0.0.1:60828 - "GET /api/entry_points?running=true HTTP/1.1" 200 +uvicorn.access INFO 2024-02-23 14:45:41,646 [pN:main.1,p:78709,tN:MainThread] 127.0.0.1:60828 - "GET /history/current_history_json?since=2024-02-23T19:39:28.000303 HTTP/1.1" 200 +uvicorn.access INFO 2024-02-23 14:45:44,678 [pN:main.1,p:78709,tN:MainThread] 127.0.0.1:60840 - "GET /history/current_history_json?since=2024-02-23T19:39:28.000303 HTTP/1.1" 200 +uvicorn.access INFO 2024-02-23 14:45:47,716 [pN:main.1,p:78709,tN:MainThread] 127.0.0.1:34606 - "GET /history/current_history_json?since=2024-02-23T19:39:28.000303 HTTP/1.1" 200 +uvicorn.access INFO 2024-02-23 14:45:50,747 [pN:main.1,p:78709,tN:MainThread] 127.0.0.1:34620 - "GET /history/current_history_json?since=2024-02-23T19:39:28.000303 HTTP/1.1" 200 +uvicorn.access INFO 2024-02-23 14:45:51,092 [pN:main.1,p:78709,tN:MainThread] 127.0.0.1:34620 - "GET /api/entry_points?running=true HTTP/1.1" 200 +uvicorn.access INFO 2024-02-23 14:45:53,780 [pN:main.1,p:78709,tN:MainThread] 127.0.0.1:34624 - "GET /history/current_history_json?since=2024-02-23T19:39:28.000303 HTTP/1.1" 200 +uvicorn.access INFO 2024-02-23 14:45:56,810 [pN:main.1,p:78709,tN:MainThread] 127.0.0.1:43404 - "GET /history/current_history_json?since=2024-02-23T19:39:28.000303 HTTP/1.1" 200 +uvicorn.access INFO 2024-02-23 14:45:59,843 [pN:main.1,p:78709,tN:MainThread] 127.0.0.1:43406 - "GET /history/current_history_json?since=2024-02-23T19:39:28.000303 HTTP/1.1" 200 +uvicorn.access INFO 2024-02-23 14:46:01,093 [pN:main.1,p:78709,tN:MainThread] 127.0.0.1:43406 - "GET /api/entry_points?running=true HTTP/1.1" 200 +uvicorn.access INFO 2024-02-23 14:46:02,885 [pN:main.1,p:78709,tN:MainThread] 127.0.0.1:43406 - "GET /history/current_history_json?since=2024-02-23T19:39:28.000303 HTTP/1.1" 200 +uvicorn.access INFO 2024-02-23 14:46:05,916 [pN:main.1,p:78709,tN:MainThread] 127.0.0.1:55884 - "GET /history/current_history_json?since=2024-02-23T19:39:28.000303 HTTP/1.1" 200 +uvicorn.access INFO 2024-02-23 14:46:08,951 [pN:main.1,p:78709,tN:MainThread] 127.0.0.1:55896 - "GET /history/current_history_json?since=2024-02-23T19:39:28.000303 HTTP/1.1" 200 +uvicorn.access INFO 2024-02-23 14:46:11,095 [pN:main.1,p:78709,tN:MainThread] 127.0.0.1:55910 - "GET /api/entry_points?running=true HTTP/1.1" 200 +uvicorn.access INFO 2024-02-23 14:46:11,983 [pN:main.1,p:78709,tN:MainThread] 127.0.0.1:55910 - "GET /history/current_history_json?since=2024-02-23T19:39:28.000303 HTTP/1.1" 200 +uvicorn.access INFO 2024-02-23 14:46:15,013 [pN:main.1,p:78709,tN:MainThread] 127.0.0.1:55920 - "GET /history/current_history_json?since=2024-02-23T19:39:28.000303 HTTP/1.1" 200 +uvicorn.access INFO 2024-02-23 14:46:18,043 [pN:main.1,p:78709,tN:MainThread] 127.0.0.1:42768 - "GET /history/current_history_json?since=2024-02-23T19:39:28.000303 HTTP/1.1" 200 +uvicorn.access INFO 2024-02-23 14:46:21,074 [pN:main.1,p:78709,tN:MainThread] 127.0.0.1:42780 - "GET /history/current_history_json?since=2024-02-23T19:39:28.000303 HTTP/1.1" 200 +uvicorn.access INFO 2024-02-23 14:46:21,095 [pN:main.1,p:78709,tN:MainThread] 127.0.0.1:42794 - "GET /api/entry_points?running=true HTTP/1.1" 200 +uvicorn.access INFO 2024-02-23 14:46:24,116 [pN:main.1,p:78709,tN:MainThread] 127.0.0.1:42804 - "GET /history/current_history_json?since=2024-02-23T19:39:28.000303 HTTP/1.1" 200 +uvicorn.access INFO 2024-02-23 14:46:27,147 [pN:main.1,p:78709,tN:MainThread] 127.0.0.1:45726 - "GET /history/current_history_json?since=2024-02-23T19:39:28.000303 HTTP/1.1" 200 +uvicorn.access INFO 2024-02-23 14:46:30,176 [pN:main.1,p:78709,tN:MainThread] 127.0.0.1:45730 - "GET /history/current_history_json?since=2024-02-23T19:39:28.000303 HTTP/1.1" 200 +uvicorn.access INFO 2024-02-23 14:46:31,096 [pN:main.1,p:78709,tN:MainThread] 127.0.0.1:45730 - "GET /api/entry_points?running=true HTTP/1.1" 200 +uvicorn.access INFO 2024-02-23 14:46:33,207 [pN:main.1,p:78709,tN:MainThread] 127.0.0.1:45732 - "GET /history/current_history_json?since=2024-02-23T19:39:28.000303 HTTP/1.1" 200 + +==> /tmp/tmpqrlh6ih1/gravity/log/celery-beat.log <== +[2024-02-23 14:46:34,296: DEBUG/MainProcess] beat: Synchronizing schedule... +[2024-02-23 14:46:34,297: DEBUG/MainProcess] beat: Waking up in 5.00 minutes. + +==> /tmp/tmpqrlh6ih1/gravity/log/gunicorn.log <== +uvicorn.access INFO 2024-02-23 14:46:36,235 [pN:main.1,p:78709,tN:MainThread] 127.0.0.1:48966 - "GET /history/current_history_json?since=2024-02-23T19:39:28.000303 HTTP/1.1" 200 +uvicorn.access INFO 2024-02-23 14:46:39,266 [pN:main.1,p:78709,tN:MainThread] 127.0.0.1:48982 - "GET /history/current_history_json?since=2024-02-23T19:39:28.000303 HTTP/1.1" 200 +uvicorn.access INFO 2024-02-23 14:46:41,098 [pN:main.1,p:78709,tN:MainThread] 127.0.0.1:48982 - "GET /api/entry_points?running=true HTTP/1.1" 200 +uvicorn.access INFO 2024-02-23 14:46:42,295 [pN:main.1,p:78709,tN:MainThread] 127.0.0.1:48982 - "GET /history/current_history_json?since=2024-02-23T19:39:28.000303 HTTP/1.1" 200 +uvicorn.access INFO 2024-02-23 14:46:45,325 [pN:main.1,p:78709,tN:MainThread] 127.0.0.1:48996 - "GET /history/current_history_json?since=2024-02-23T19:39:28.000303 HTTP/1.1" 200 +uvicorn.access INFO 2024-02-23 14:46:48,356 [pN:main.1,p:78709,tN:MainThread] 127.0.0.1:37342 - "GET /history/current_history_json?since=2024-02-23T19:39:28.000303 HTTP/1.1" 200 +uvicorn.access INFO 2024-02-23 14:46:51,108 [pN:main.1,p:78709,tN:MainThread] 127.0.0.1:37354 - "GET /api/entry_points?running=true HTTP/1.1" 200 +uvicorn.access INFO 2024-02-23 14:46:51,384 [pN:main.1,p:78709,tN:MainThread] 127.0.0.1:37354 - "GET /history/current_history_json?since=2024-02-23T19:39:28.000303 HTTP/1.1" 200 +uvicorn.access INFO 2024-02-23 14:46:54,415 [pN:main.1,p:78709,tN:MainThread] 127.0.0.1:37356 - "GET /history/current_history_json?since=2024-02-23T19:39:28.000303 HTTP/1.1" 200 +uvicorn.access INFO 2024-02-23 14:46:57,446 [pN:main.1,p:78709,tN:MainThread] 127.0.0.1:59558 - "GET /history/current_history_json?since=2024-02-23T19:39:28.000303 HTTP/1.1" 200 +uvicorn.access INFO 2024-02-23 14:47:00,478 [pN:main.1,p:78709,tN:MainThread] 127.0.0.1:59572 - "GET /history/current_history_json?since=2024-02-23T19:39:28.000303 HTTP/1.1" 200 +uvicorn.access INFO 2024-02-23 14:47:01,102 [pN:main.1,p:78709,tN:MainThread] 127.0.0.1:59572 - "GET /api/entry_points?running=true HTTP/1.1" 200 +uvicorn.access INFO 2024-02-23 14:47:03,507 [pN:main.1,p:78709,tN:MainThread] 127.0.0.1:59582 - "GET /history/current_history_json?since=2024-02-23T19:39:28.000303 HTTP/1.1" 200 +uvicorn.access INFO 2024-02-23 14:47:06,538 [pN:main.1,p:78709,tN:MainThread] 127.0.0.1:48358 - "GET /history/current_history_json?since=2024-02-23T19:39:28.000303 HTTP/1.1" 200 +uvicorn.access INFO 2024-02-23 14:47:09,566 [pN:main.1,p:78709,tN:MainThread] 127.0.0.1:48370 - "GET /history/current_history_json?since=2024-02-23T19:39:28.000303 HTTP/1.1" 200 +uvicorn.access INFO 2024-02-23 14:47:11,103 [pN:main.1,p:78709,tN:MainThread] 127.0.0.1:48370 - "GET /api/entry_points?running=true HTTP/1.1" 200 +uvicorn.access INFO 2024-02-23 14:47:12,592 [pN:main.1,p:78709,tN:MainThread] 127.0.0.1:48370 - "GET /history/current_history_json?since=2024-02-23T19:39:28.000303 HTTP/1.1" 200 +uvicorn.access INFO 2024-02-23 14:47:15,621 [pN:main.1,p:78709,tN:MainThread] 127.0.0.1:48386 - "GET /history/current_history_json?since=2024-02-23T19:39:28.000303 HTTP/1.1" 200 +uvicorn.access INFO 2024-02-23 14:47:18,657 [pN:main.1,p:78709,tN:MainThread] 127.0.0.1:50644 - "GET /history/current_history_json?since=2024-02-23T19:39:28.000303 HTTP/1.1" 200 +uvicorn.access INFO 2024-02-23 14:47:21,107 [pN:main.1,p:78709,tN:MainThread] 127.0.0.1:50650 - "GET /api/entry_points?running=true HTTP/1.1" 200 +uvicorn.access INFO 2024-02-23 14:47:21,686 [pN:main.1,p:78709,tN:MainThread] 127.0.0.1:50650 - "GET /history/current_history_json?since=2024-02-23T19:39:28.000303 HTTP/1.1" 200 +uvicorn.access INFO 2024-02-23 14:47:24,717 [pN:main.1,p:78709,tN:MainThread] 127.0.0.1:50664 - "GET /history/current_history_json?since=2024-02-23T19:39:28.000303 HTTP/1.1" 200 +uvicorn.access INFO 2024-02-23 14:47:27,747 [pN:main.1,p:78709,tN:MainThread] 127.0.0.1:42422 - "GET /history/current_history_json?since=2024-02-23T19:39:28.000303 HTTP/1.1" 200 +uvicorn.access INFO 2024-02-23 14:47:30,777 [pN:main.1,p:78709,tN:MainThread] 127.0.0.1:42436 - "GET /history/current_history_json?since=2024-02-23T19:39:28.000303 HTTP/1.1" 200 +uvicorn.access INFO 2024-02-23 14:47:31,107 [pN:main.1,p:78709,tN:MainThread] 127.0.0.1:42436 - "GET /api/entry_points?running=true HTTP/1.1" 200 +uvicorn.access INFO 2024-02-23 14:47:33,807 [pN:main.1,p:78709,tN:MainThread] 127.0.0.1:42440 - "GET /history/current_history_json?since=2024-02-23T19:39:28.000303 HTTP/1.1" 200 +uvicorn.access INFO 2024-02-23 14:47:36,836 [pN:main.1,p:78709,tN:MainThread] 127.0.0.1:46004 - "GET /history/current_history_json?since=2024-02-23T19:39:28.000303 HTTP/1.1" 200 +uvicorn.access INFO 2024-02-23 14:47:39,863 [pN:main.1,p:78709,tN:MainThread] 127.0.0.1:46018 - "GET /history/current_history_json?since=2024-02-23T19:39:28.000303 HTTP/1.1" 200 +uvicorn.access INFO 2024-02-23 14:47:41,108 [pN:main.1,p:78709,tN:MainThread] 127.0.0.1:46018 - "GET /api/entry_points?running=true HTTP/1.1" 200 +uvicorn.access INFO 2024-02-23 14:47:42,892 [pN:main.1,p:78709,tN:MainThread] 127.0.0.1:46018 - "GET /history/current_history_json?since=2024-02-23T19:39:28.000303 HTTP/1.1" 200 +uvicorn.access INFO 2024-02-23 14:47:45,921 [pN:main.1,p:78709,tN:MainThread] 127.0.0.1:57628 - "GET /history/current_history_json?since=2024-02-23T19:39:28.000303 HTTP/1.1" 200 +uvicorn.access INFO 2024-02-23 14:47:48,951 [pN:main.1,p:78709,tN:MainThread] 127.0.0.1:57632 - "GET /history/current_history_json?since=2024-02-23T19:39:28.000303 HTTP/1.1" 200 +uvicorn.access INFO 2024-02-23 14:47:51,111 [pN:main.1,p:78709,tN:MainThread] 127.0.0.1:57644 - "GET /api/entry_points?running=true HTTP/1.1" 200 +uvicorn.access INFO 2024-02-23 14:47:51,978 [pN:main.1,p:78709,tN:MainThread] 127.0.0.1:57644 - "GET /history/current_history_json?since=2024-02-23T19:39:28.000303 HTTP/1.1" 200 +uvicorn.access INFO 2024-02-23 14:47:55,007 [pN:main.1,p:78709,tN:MainThread] 127.0.0.1:57660 - "GET /history/current_history_json?since=2024-02-23T19:39:28.000303 HTTP/1.1" 200 +uvicorn.access INFO 2024-02-23 14:47:58,036 [pN:main.1,p:78709,tN:MainThread] 127.0.0.1:49826 - "GET /history/current_history_json?since=2024-02-23T19:39:28.000303 HTTP/1.1" 200 +uvicorn.access INFO 2024-02-23 14:48:01,065 [pN:main.1,p:78709,tN:MainThread] 127.0.0.1:49842 - "GET /history/current_history_json?since=2024-02-23T19:39:28.000303 HTTP/1.1" 200 +uvicorn.access INFO 2024-02-23 14:48:01,109 [pN:main.1,p:78709,tN:MainThread] 127.0.0.1:49842 - "GET /api/entry_points?running=true HTTP/1.1" 200 +uvicorn.access INFO 2024-02-23 14:48:04,207 [pN:main.1,p:78709,tN:MainThread] 127.0.0.1:49856 - "GET /history/current_history_json?since=2024-02-23T19:39:28.000303 HTTP/1.1" 200 +uvicorn.access INFO 2024-02-23 14:48:11,204 [pN:main.1,p:78709,tN:MainThread] 127.0.0.1:43370 - "GET /api/entry_points?running=true HTTP/1.1" 200 +uvicorn.access INFO 2024-02-23 14:48:22,200 [pN:main.1,p:78709,tN:MainThread] 127.0.0.1:56118 - "GET /api/entry_points?running=true HTTP/1.1" 200 +uvicorn.access INFO 2024-02-23 14:48:32,203 [pN:main.1,p:78709,tN:MainThread] 127.0.0.1:46388 - "GET /api/entry_points?running=true HTTP/1.1" 200 +uvicorn.access INFO 2024-02-23 14:48:43,205 [pN:main.1,p:78709,tN:MainThread] 127.0.0.1:44136 - "GET /api/entry_points?running=true HTTP/1.1" 200 +uvicorn.access INFO 2024-02-23 14:48:53,213 [pN:main.1,p:78709,tN:MainThread] 127.0.0.1:51218 - "GET /api/entry_points?running=true HTTP/1.1" 200 +uvicorn.access INFO 2024-02-23 14:49:05,199 [pN:main.1,p:78709,tN:MainThread] 127.0.0.1:59494 - "GET /history/current_history_json?since=2024-02-23T19:39:28.000303 HTTP/1.1" 200 +uvicorn.access INFO 2024-02-23 14:50:03,199 [pN:main.1,p:78709,tN:MainThread] 127.0.0.1:58916 - "GET /api/entry_points?running=true HTTP/1.1" 200 +uvicorn.access INFO 2024-02-23 14:50:06,195 [pN:main.1,p:78709,tN:MainThread] 127.0.0.1:56064 - "GET /history/current_history_json?since=2024-02-23T19:39:28.000303 HTTP/1.1" 200 +uvicorn.access INFO 2024-02-23 14:51:03,204 [pN:main.1,p:78709,tN:MainThread] 127.0.0.1:46606 - "GET /api/entry_points?running=true HTTP/1.1" 200 +uvicorn.access INFO 2024-02-23 14:51:07,197 [pN:main.1,p:78709,tN:MainThread] 127.0.0.1:58106 - "GET /history/current_history_json?since=2024-02-23T19:39:28.000303 HTTP/1.1" 200 + +==> /tmp/tmpqrlh6ih1/gravity/log/celery-beat.log <== +[2024-02-23 14:51:34,270: DEBUG/MainProcess] beat: Synchronizing schedule... +[2024-02-23 14:51:34,271: INFO/MainProcess] Scheduler: Sending due task clean-object-store-caches (galaxy.clean_object_store_caches) +[2024-02-23 14:51:34,287: DEBUG/MainProcess] galaxy.clean_object_store_caches sent. id->2e7725dc-31d4-4d56-8afd-8dae5ec0815c +[2024-02-23 14:51:34,288: DEBUG/MainProcess] beat: Waking up in 5.00 minutes. + +==> /tmp/tmpqrlh6ih1/gravity/log/celery.log <== +[2024-02-23 14:51:35,170: INFO/main] Task galaxy.clean_object_store_caches[2e7725dc-31d4-4d56-8afd-8dae5ec0815c] received +[2024-02-23 14:51:35,171: DEBUG/main] TaskPool: Apply <function fast_trace_task at 0x7f9f1756ed90> (args:('galaxy.clean_object_store_caches', '2e7725dc-31d4-4d56-8afd-8dae5ec0815c', {'lang': 'py', 'task': 'galaxy.clean_object_store_caches', 'id': '2e7725dc-31d4-4d56-8afd-8dae5ec0815c', 'shadow': None, 'eta': None, 'expires': None, 'group': None, 'group_index': None, 'retries': 0, 'timelimit': [None, None], 'root_id': '2e7725dc-31d4-4d56-8afd-8dae5ec0815c', 'parent_id': None, 'argsrepr': '()', 'kwargsrepr': '{}', 'origin': 'gen78504@laila', 'ignore_result': False, 'properties': {'correlation_id': '2e7725dc-31d4-4d56-8afd-8dae5ec0815c', 'reply_to': 'a834fe8d-fc9c-31a2-9791-be846a6fc4af', 'delivery_mode': 2, 'delivery_info': {'exchange': '', 'routing_key': 'galaxy.internal'}, 'priority': 0, 'body_encoding': 'base64', 'delivery_tag': '3b2497f6-7230-41ee-afbb-d68e1f75fbfd'}, 'reply_to': 'a834fe8d-fc9c-31a2-9791-be846a6fc4af', 'correlation_id': '2e7725dc-31d4-4d56-8afd-8dae5ec0815c', 'hostname': 'celery@laila', 'delivery_info': {'exchange': '', 'routing_key': 'galaxy.internal', 'priority': 0, 'redelivered': None},... kwargs:{}) +[2024-02-23 14:51:35,174: INFO/main] Successfully executed Celery task clean_object_store_caches to prune object store cache directories clean_object_store_caches to prune object store cache directories (0.612 ms) +[2024-02-23 14:51:35,174: INFO/main] Task galaxy.clean_object_store_caches[2e7725dc-31d4-4d56-8afd-8dae5ec0815c] succeeded in 0.0025258829118683934s: None + +==> /tmp/tmpqrlh6ih1/gravity/log/gunicorn.log <== +uvicorn.access INFO 2024-02-23 14:52:03,197 [pN:main.1,p:78709,tN:MainThread] 127.0.0.1:34074 - "GET /api/entry_points?running=true HTTP/1.1" 200 +uvicorn.access INFO 2024-02-23 14:52:08,198 [pN:main.1,p:78709,tN:MainThread] 127.0.0.1:46298 - "GET /history/current_history_json?since=2024-02-23T19:39:28.000303 HTTP/1.1" 200 +uvicorn.access INFO 2024-02-23 14:53:03,199 [pN:main.1,p:78709,tN:MainThread] 127.0.0.1:52976 - "GET /api/entry_points?running=true HTTP/1.1" 200 +uvicorn.access INFO 2024-02-23 14:53:04,797 [pN:main.1,p:78709,tN:MainThread] 127.0.0.1:52976 - "GET /history/current_history_json?since=2024-02-23T19:39:28.000303 HTTP/1.1" 200 +uvicorn.access INFO 2024-02-23 14:53:08,199 [pN:main.1,p:78709,tN:MainThread] 127.0.0.1:56382 - "GET /history/current_history_json?since=2024-02-23T19:39:28.000303 HTTP/1.1" 200 +uvicorn.access INFO 2024-02-23 14:53:14,193 [pN:main.1,p:78709,tN:MainThread] 127.0.0.1:56384 - "GET /api/entry_points?running=true HTTP/1.1" 200 +uvicorn.access INFO 2024-02-23 14:53:24,195 [pN:main.1,p:78709,tN:MainThread] 127.0.0.1:57160 - "GET /api/entry_points?running=true HTTP/1.1" 200 +uvicorn.access INFO 2024-02-23 14:53:35,193 [pN:main.1,p:78709,tN:MainThread] 127.0.0.1:37546 - "GET /api/entry_points?running=true HTTP/1.1" 200 +uvicorn.access INFO 2024-02-23 14:53:45,192 [pN:main.1,p:78709,tN:MainThread] 127.0.0.1:47560 - "GET /api/entry_points?running=true HTTP/1.1" 200 +uvicorn.access INFO 2024-02-23 14:53:55,194 [pN:main.1,p:78709,tN:MainThread] 127.0.0.1:53882 - "GET /api/entry_points?running=true HTTP/1.1" 200 +uvicorn.access INFO 2024-02-23 14:54:09,190 [pN:main.1,p:78709,tN:MainThread] 127.0.0.1:52604 - "GET /history/current_history_json?since=2024-02-23T19:39:28.000303 HTTP/1.1" 200 +uvicorn.access INFO 2024-02-23 14:54:19,613 [pN:main.1,p:78709,tN:MainThread] 127.0.0.1:42472 - "GET /history/current_history_json?since=2024-02-23T19:39:28.000303 HTTP/1.1" 200 +uvicorn.access INFO 2024-02-23 14:54:19,616 [pN:main.1,p:78709,tN:MainThread] 127.0.0.1:42476 - "GET /api/entry_points?running=true HTTP/1.1" 200 +uvicorn.access INFO 2024-02-23 14:54:22,643 [pN:main.1,p:78709,tN:MainThread] 127.0.0.1:42492 - "GET /history/current_history_json?since=2024-02-23T19:39:28.000303 HTTP/1.1" 200 +uvicorn.access INFO 2024-02-23 14:54:25,672 [pN:main.1,p:78709,tN:MainThread] 127.0.0.1:44058 - "GET /history/current_history_json?since=2024-02-23T19:39:28.000303 HTTP/1.1" 200 +uvicorn.access INFO 2024-02-23 14:54:28,700 [pN:main.1,p:78709,tN:MainThread] 127.0.0.1:44072 - "GET /history/current_history_json?since=2024-02-23T19:39:28.000303 HTTP/1.1" 200 +uvicorn.access INFO 2024-02-23 14:54:29,595 [pN:main.1,p:78709,tN:MainThread] 127.0.0.1:44072 - "GET /api/entry_points?running=true HTTP/1.1" 200 +uvicorn.access INFO 2024-02-23 14:54:31,729 [pN:main.1,p:78709,tN:MainThread] 127.0.0.1:44088 - "GET /history/current_history_json?since=2024-02-23T19:39:28.000303 HTTP/1.1" 200 +uvicorn.access INFO 2024-02-23 14:54:34,768 [pN:main.1,p:78709,tN:MainThread] 127.0.0.1:44090 - "GET /history/current_history_json?since=2024-02-23T19:39:28.000303 HTTP/1.1" 200 +uvicorn.access INFO 2024-02-23 14:54:37,802 [pN:main.1,p:78709,tN:MainThread] 127.0.0.1:60124 - "GET /history/current_history_json?since=2024-02-23T19:39:28.000303 HTTP/1.1" 200 +uvicorn.access INFO 2024-02-23 14:54:39,595 [pN:main.1,p:78709,tN:MainThread] 127.0.0.1:60124 - "GET /api/entry_points?running=true HTTP/1.1" 200 +uvicorn.access INFO 2024-02-23 14:54:40,835 [pN:main.1,p:78709,tN:MainThread] 127.0.0.1:60124 - "GET /history/current_history_json?since=2024-02-23T19:39:28.000303 HTTP/1.1" 200 +uvicorn.access INFO 2024-02-23 14:54:43,874 [pN:main.1,p:78709,tN:MainThread] 127.0.0.1:60140 - "GET /history/current_history_json?since=2024-02-23T19:39:28.000303 HTTP/1.1" 200 +uvicorn.access INFO 2024-02-23 14:54:46,903 [pN:main.1,p:78709,tN:MainThread] 127.0.0.1:45230 - "GET /history/current_history_json?since=2024-02-23T19:39:28.000303 HTTP/1.1" 200 +uvicorn.access INFO 2024-02-23 14:54:49,596 [pN:main.1,p:78709,tN:MainThread] 127.0.0.1:45246 - "GET /api/entry_points?running=true HTTP/1.1" 200 +uvicorn.access INFO 2024-02-23 14:54:49,934 [pN:main.1,p:78709,tN:MainThread] 127.0.0.1:45246 - "GET /history/current_history_json?since=2024-02-23T19:39:28.000303 HTTP/1.1" 200 +uvicorn.access INFO 2024-02-23 14:54:52,972 [pN:main.1,p:78709,tN:MainThread] 127.0.0.1:45260 - "GET /history/current_history_json?since=2024-02-23T19:39:28.000303 HTTP/1.1" 200 +uvicorn.access INFO 2024-02-23 14:54:56,003 [pN:main.1,p:78709,tN:MainThread] 127.0.0.1:50512 - "GET /history/current_history_json?since=2024-02-23T19:39:28.000303 HTTP/1.1" 200 +uvicorn.access INFO 2024-02-23 14:54:59,031 [pN:main.1,p:78709,tN:MainThread] 127.0.0.1:50520 - "GET /history/current_history_json?since=2024-02-23T19:39:28.000303 HTTP/1.1" 200 +uvicorn.access INFO 2024-02-23 14:54:59,599 [pN:main.1,p:78709,tN:MainThread] 127.0.0.1:50520 - "GET /api/entry_points?running=true HTTP/1.1" 200 +uvicorn.access INFO 2024-02-23 14:55:02,064 [pN:main.1,p:78709,tN:MainThread] 127.0.0.1:50532 - "GET /history/current_history_json?since=2024-02-23T19:39:28.000303 HTTP/1.1" 200 +uvicorn.access INFO 2024-02-23 14:55:05,104 [pN:main.1,p:78709,tN:MainThread] 127.0.0.1:50546 - "GET /history/current_history_json?since=2024-02-23T19:39:28.000303 HTTP/1.1" 200 +uvicorn.access INFO 2024-02-23 14:55:08,135 [pN:main.1,p:78709,tN:MainThread] 127.0.0.1:54120 - "GET /history/current_history_json?since=2024-02-23T19:39:28.000303 HTTP/1.1" 200 +uvicorn.access INFO 2024-02-23 14:55:09,600 [pN:main.1,p:78709,tN:MainThread] 127.0.0.1:54120 - "GET /api/entry_points?running=true HTTP/1.1" 200 +uvicorn.access INFO 2024-02-23 14:55:11,164 [pN:main.1,p:78709,tN:MainThread] 127.0.0.1:54120 - "GET /history/current_history_json?since=2024-02-23T19:39:28.000303 HTTP/1.1" 200 +uvicorn.access INFO 2024-02-23 14:55:14,192 [pN:main.1,p:78709,tN:MainThread] 127.0.0.1:54122 - "GET /history/current_history_json?since=2024-02-23T19:39:28.000303 HTTP/1.1" 200 +uvicorn.access INFO 2024-02-23 14:55:17,223 [pN:main.1,p:78709,tN:MainThread] 127.0.0.1:44288 - "GET /history/current_history_json?since=2024-02-23T19:39:28.000303 HTTP/1.1" 200 +uvicorn.access INFO 2024-02-23 14:55:19,605 [pN:main.1,p:78709,tN:MainThread] 127.0.0.1:44296 - "GET /api/entry_points?running=true HTTP/1.1" 200 +uvicorn.access INFO 2024-02-23 14:55:20,251 [pN:main.1,p:78709,tN:MainThread] 127.0.0.1:44296 - "GET /history/current_history_json?since=2024-02-23T19:39:28.000303 HTTP/1.1" 200 +uvicorn.access INFO 2024-02-23 14:55:23,280 [pN:main.1,p:78709,tN:MainThread] 127.0.0.1:44312 - "GET /history/current_history_json?since=2024-02-23T19:39:28.000303 HTTP/1.1" 200 +uvicorn.access INFO 2024-02-23 14:55:26,311 [pN:main.1,p:78709,tN:MainThread] 127.0.0.1:39666 - "GET /history/current_history_json?since=2024-02-23T19:39:28.000303 HTTP/1.1" 200 +uvicorn.access INFO 2024-02-23 14:55:29,341 [pN:main.1,p:78709,tN:MainThread] 127.0.0.1:39682 - "GET /history/current_history_json?since=2024-02-23T19:39:28.000303 HTTP/1.1" 200 +uvicorn.access INFO 2024-02-23 14:55:29,603 [pN:main.1,p:78709,tN:MainThread] 127.0.0.1:39682 - "GET /api/entry_points?running=true HTTP/1.1" 200 +uvicorn.access INFO 2024-02-23 14:55:32,371 [pN:main.1,p:78709,tN:MainThread] 127.0.0.1:39686 - "GET /history/current_history_json?since=2024-02-23T19:39:28.000303 HTTP/1.1" 200 +uvicorn.access INFO 2024-02-23 14:55:35,401 [pN:main.1,p:78709,tN:MainThread] 127.0.0.1:39696 - "GET /history/current_history_json?since=2024-02-23T19:39:28.000303 HTTP/1.1" 200 +uvicorn.access INFO 2024-02-23 14:55:38,427 [pN:main.1,p:78709,tN:MainThread] 127.0.0.1:55476 - "GET /history/current_history_json?since=2024-02-23T19:39:28.000303 HTTP/1.1" 200 +uvicorn.access INFO 2024-02-23 14:55:39,604 [pN:main.1,p:78709,tN:MainThread] 127.0.0.1:55476 - "GET /api/entry_points?running=true HTTP/1.1" 200 +uvicorn.access INFO 2024-02-23 14:55:41,455 [pN:main.1,p:78709,tN:MainThread] 127.0.0.1:55476 - "GET /history/current_history_json?since=2024-02-23T19:39:28.000303 HTTP/1.1" 200 +uvicorn.access INFO 2024-02-23 14:55:44,482 [pN:main.1,p:78709,tN:MainThread] 127.0.0.1:55490 - "GET /history/current_history_json?since=2024-02-23T19:39:28.000303 HTTP/1.1" 200 +uvicorn.access INFO 2024-02-23 14:55:47,511 [pN:main.1,p:78709,tN:MainThread] 127.0.0.1:38200 - "GET /history/current_history_json?since=2024-02-23T19:39:28.000303 HTTP/1.1" 200 +uvicorn.access INFO 2024-02-23 14:55:49,607 [pN:main.1,p:78709,tN:MainThread] 127.0.0.1:38202 - "GET /api/entry_points?running=true HTTP/1.1" 200 +uvicorn.access INFO 2024-02-23 14:55:50,551 [pN:main.1,p:78709,tN:MainThread] 127.0.0.1:38202 - "GET /history/current_history_json?since=2024-02-23T19:39:28.000303 HTTP/1.1" 200 +uvicorn.access INFO 2024-02-23 14:55:53,580 [pN:main.1,p:78709,tN:MainThread] 127.0.0.1:38218 - "GET /history/current_history_json?since=2024-02-23T19:39:28.000303 HTTP/1.1" 200 +uvicorn.access INFO 2024-02-23 14:55:56,609 [pN:main.1,p:78709,tN:MainThread] 127.0.0.1:40354 - "GET /history/current_history_json?since=2024-02-23T19:39:28.000303 HTTP/1.1" 200 + +==> /tmp/tmpqrlh6ih1/gravity/log/celery-beat.log <== +[2024-02-23 14:56:34,388: DEBUG/MainProcess] beat: Synchronizing schedule... +[2024-02-23 14:56:34,389: DEBUG/MainProcess] beat: Waking up in 5.00 minutes. +[2024-02-23 15:01:34,361: DEBUG/MainProcess] beat: Synchronizing schedule... +[2024-02-23 15:01:34,363: INFO/MainProcess] Scheduler: Sending due task clean-object-store-caches (galaxy.clean_object_store_caches) +[2024-02-23 15:01:34,379: DEBUG/MainProcess] galaxy.clean_object_store_caches sent. id->535f1714-1353-40ac-acee-799c6b05d637 +[2024-02-23 15:01:34,380: DEBUG/MainProcess] beat: Waking up in 5.00 minutes. + +==> /tmp/tmpqrlh6ih1/gravity/log/celery.log <== +[2024-02-23 15:01:35,002: INFO/main] Task galaxy.clean_object_store_caches[535f1714-1353-40ac-acee-799c6b05d637] received +[2024-02-23 15:01:35,002: DEBUG/main] TaskPool: Apply <function fast_trace_task at 0x7f9f1756ed90> (args:('galaxy.clean_object_store_caches', '535f1714-1353-40ac-acee-799c6b05d637', {'lang': 'py', 'task': 'galaxy.clean_object_store_caches', 'id': '535f1714-1353-40ac-acee-799c6b05d637', 'shadow': None, 'eta': None, 'expires': None, 'group': None, 'group_index': None, 'retries': 0, 'timelimit': [None, None], 'root_id': '535f1714-1353-40ac-acee-799c6b05d637', 'parent_id': None, 'argsrepr': '()', 'kwargsrepr': '{}', 'origin': 'gen78504@laila', 'ignore_result': False, 'properties': {'correlation_id': '535f1714-1353-40ac-acee-799c6b05d637', 'reply_to': 'a834fe8d-fc9c-31a2-9791-be846a6fc4af', 'delivery_mode': 2, 'delivery_info': {'exchange': '', 'routing_key': 'galaxy.internal'}, 'priority': 0, 'body_encoding': 'base64', 'delivery_tag': '02332643-0c8b-4178-9919-02885eee82d3'}, 'reply_to': 'a834fe8d-fc9c-31a2-9791-be846a6fc4af', 'correlation_id': '535f1714-1353-40ac-acee-799c6b05d637', 'hostname': 'celery@laila', 'delivery_info': {'exchange': '', 'routing_key': 'galaxy.internal', 'priority': 0, 'redelivered': None},... kwargs:{}) +[2024-02-23 15:01:35,005: INFO/main] Successfully executed Celery task clean_object_store_caches to prune object store cache directories clean_object_store_caches to prune object store cache directories (0.552 ms) +[2024-02-23 15:01:35,040: INFO/main] Task galaxy.clean_object_store_caches[535f1714-1353-40ac-acee-799c6b05d637] succeeded in 0.03627739998046309s: None + +==> /tmp/tmpqrlh6ih1/gravity/log/celery-beat.log <== +[2024-02-23 15:06:34,480: DEBUG/MainProcess] beat: Synchronizing schedule... +[2024-02-23 15:06:34,482: DEBUG/MainProcess] beat: Waking up in 5.00 minutes. +[2024-02-23 15:11:34,383: DEBUG/MainProcess] beat: Synchronizing schedule... +[2024-02-23 15:11:34,384: INFO/MainProcess] Scheduler: Sending due task clean-object-store-caches (galaxy.clean_object_store_caches) +[2024-02-23 15:11:34,400: DEBUG/MainProcess] galaxy.clean_object_store_caches sent. id->6eb22bfa-2bec-4d16-ba81-b677c429938a +[2024-02-23 15:11:34,400: DEBUG/MainProcess] beat: Waking up in 5.00 minutes. + +==> /tmp/tmpqrlh6ih1/gravity/log/celery.log <== +[2024-02-23 15:11:35,103: INFO/main] Task galaxy.clean_object_store_caches[6eb22bfa-2bec-4d16-ba81-b677c429938a] received +[2024-02-23 15:11:35,104: DEBUG/main] TaskPool: Apply <function fast_trace_task at 0x7f9f1756ed90> (args:('galaxy.clean_object_store_caches', '6eb22bfa-2bec-4d16-ba81-b677c429938a', {'lang': 'py', 'task': 'galaxy.clean_object_store_caches', 'id': '6eb22bfa-2bec-4d16-ba81-b677c429938a', 'shadow': None, 'eta': None, 'expires': None, 'group': None, 'group_index': None, 'retries': 0, 'timelimit': [None, None], 'root_id': '6eb22bfa-2bec-4d16-ba81-b677c429938a', 'parent_id': None, 'argsrepr': '()', 'kwargsrepr': '{}', 'origin': 'gen78504@laila', 'ignore_result': False, 'properties': {'correlation_id': '6eb22bfa-2bec-4d16-ba81-b677c429938a', 'reply_to': 'a834fe8d-fc9c-31a2-9791-be846a6fc4af', 'delivery_mode': 2, 'delivery_info': {'exchange': '', 'routing_key': 'galaxy.internal'}, 'priority': 0, 'body_encoding': 'base64', 'delivery_tag': 'f8974f4e-d12f-44c5-8432-dd8db2f74b43'}, 'reply_to': 'a834fe8d-fc9c-31a2-9791-be846a6fc4af', 'correlation_id': '6eb22bfa-2bec-4d16-ba81-b677c429938a', 'hostname': 'celery@laila', 'delivery_info': {'exchange': '', 'routing_key': 'galaxy.internal', 'priority': 0, 'redelivered': None},... kwargs:{}) +[2024-02-23 15:11:35,107: INFO/main] Successfully executed Celery task clean_object_store_caches to prune object store cache directories clean_object_store_caches to prune object store cache directories (0.548 ms) +[2024-02-23 15:11:35,107: INFO/main] Task galaxy.clean_object_store_caches[6eb22bfa-2bec-4d16-ba81-b677c429938a] succeeded in 0.0018642700742930174s: None
--- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/test-data/adaptor_report.tab Fri Mar 01 18:26:57 2024 +0000 @@ -0,0 +1,5 @@ +#accession length action range name +KPN158_ctg010 251170 ACTION_TRIM 1..27 CONTAMINATION_SOURCE_TYPE_ADAPTOR:NGB01113.1:Illumina TruSeq UD/CD Adapter Trimming Read 1 +KPN158_ctg041 1411 ACTION_TRIM 81..150 CONTAMINATION_SOURCE_TYPE_ADAPTOR:NGB00753.1:Illumina TruSeq DNA HT and RNA HT i5 index D507 adapter (Oligonucleotide sequence copyright 2007-2012 Illumina, Inc. All rights reserved.) +KPN158_ctg047 1099 ACTION_TRIM 1047..1099 CONTAMINATION_SOURCE_TYPE_ADAPTOR:NGB01092.1:Rubicon Genomics ThruPLEX DNA-seq dual-index D504 +KPN158_ctg049 1061 ACTION_TRIM 1..67 CONTAMINATION_SOURCE_TYPE_ADAPTOR:NGB00753.1:Illumina TruSeq DNA HT and RNA HT i5 index D507 adapter (Oligonucleotide sequence copyright 2007-2012 Illumina, Inc. All rights reserved.)
--- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/test.log Fri Mar 01 18:26:57 2024 +0000 @@ -0,0 +1,13578 @@ +Created directory for Galaxy configuration [/tmp/tmpu7x63f_i] +Writing dependency_resolvers_config_file to path /tmp/tmpu7x63f_i/resolvers_conf.xml with contents [<dependency_resolvers> + <tool_shed_packages /> + <conda auto_init="True" auto_install="True" ensure_channels="conda-forge,bioconda,defaults" prefix="/afs/bx.psu.edu/home/rico/miniconda3" condarc_override="/scratch/rico/.planemo/condarc" /> + <conda versionless="true" auto_init="True" auto_install="True" ensure_channels="conda-forge,bioconda,defaults" prefix="/afs/bx.psu.edu/home/rico/miniconda3" condarc_override="/scratch/rico/.planemo/condarc" /> +</dependency_resolvers> +] +Writing tool_conf to path /tmp/tmpu7x63f_i/tool_conf.xml with contents [<toolbox> + <tool file="data_source/upload.xml" /> + <tool file="/scratch/rico/galaxytools/tools/ncbi_fcs_adaptor/ncbi_fcs_adaptor.xml" /> +</toolbox> +] +Starting Galaxy with command [cd /scratch/rico/galaxy && if [ -d .venv ]; then GALAXY_VIRTUAL_ENV=.venv; else GALAXY_VIRTUAL_ENV=/scratch/rico/.planemo/gx_venv_3; fi && export GALAXY_VIRTUAL_ENV && echo "Set \$GALAXY_VIRTUAL_ENV to $GALAXY_VIRTUAL_ENV" && if [ -e "$GALAXY_VIRTUAL_ENV" ]; then echo "Virtual environment directory exists."; else echo "Virtual environment directory does not exist."; fi && if [ ! -e "$GALAXY_VIRTUAL_ENV" ]; then /scratch/rico/.venv/bin/virtualenv $GALAXY_VIRTUAL_ENV -p /scratch/rico/.venv/bin/python3; echo "Created virtualenv"; fi && echo "Set \$GALAXY_VIRTUAL_ENV to $GALAXY_VIRTUAL_ENV" && if [ -e "$GALAXY_VIRTUAL_ENV" ]; then echo "Virtual environment directory exists."; else echo "Virtual environment directory does not exist."; fi && if [ -e "$GALAXY_VIRTUAL_ENV" ]; then . "$GALAXY_VIRTUAL_ENV"/bin/activate; echo "Activated a virtualenv for Galaxy"; echo "$VIRTUAL_ENV"; else echo "Failed to activate virtualenv."; fi && bash -c 'pwd' && bash -c 'which python' && bash -c 'which pip' && bash -c 'echo $GALAXY_VIRTUAL_ENV' && bash -c 'echo $VIRTUAL_ENV' && bash -c 'ls -a' && /scratch/rico/galaxy/run.sh $COMMON_STARTUP_ARGS --daemon] +With environment variables: +============================ +GALAXY_CONFIG_OVERRIDE_MASTER_API_KEY="test_key" +GALAXY_CONFIG_OVERRIDE_ADMIN_USERS="planemo@galaxyproject.org,test@bx.psu.edu" +GALAXY_CONFIG_OVERRIDE_EXPOSE_DATASET_PATH="True" +GALAXY_CONFIG_OVERRIDE_COLLECT_OUTPUTS_FROM="job_working_directory" +GALAXY_CONFIG_OVERRIDE_ALLOW_PATH_PASTE="True" +GALAXY_CONFIG_OVERRIDE_CHECK_MIGRATE_TOOLS="False" +GALAXY_CONFIG_OVERRIDE_USE_CACHED_DEPENDENCY_MANAGER="True" +GALAXY_CONFIG_OVERRIDE_BRAND="Configured by Planemo" +GALAXY_CONFIG_OVERRIDE_STRICT_CWL_VALIDATION="True" +GALAXY_CONFIG_OVERRIDE_CLEANUP_JOB="never" +GALAXY_CONFIG_OVERRIDE_SINGLE_USER="planemo@galaxyproject.org" +GALAXY_CONFIG_OVERRIDE_SERVER_NAME="main" +GALAXY_CONFIG_OVERRIDE_FTP_UPLOAD_DIR_TEMPLATE="${ftp_upload_dir}" +GALAXY_CONFIG_OVERRIDE_FTP_UPLOAD_PURGE="False" +GALAXY_CONFIG_OVERRIDE_FTP_UPLOAD_DIR="/scratch/rico/galaxytools/tools/ncbi_fcs_adaptor/test-data" +GALAXY_CONFIG_OVERRIDE_FTP_UPLOAD_SITE="Test Data" +GALAXY_CONFIG_OVERRIDE_CHECK_UPLOAD_CONTENT="False" +GALAXY_CONFIG_OVERRIDE_TOOL_DEPENDENCY_DIR="/tmp/tmpu7x63f_i/deps" +GALAXY_CONFIG_OVERRIDE_FILE_PATH="/tmp/tmpu7x63f_i/files" +GALAXY_CONFIG_OVERRIDE_NEW_FILE_PATH="/tmp/tmpu7x63f_i/tmp" +GALAXY_CONFIG_OVERRIDE_TOOL_CONFIG_FILE="/tmp/tmpu7x63f_i/tool_conf.xml,/tmp/tmpu7x63f_i/shed_tools_conf.xml" +GALAXY_CONFIG_OVERRIDE_TOOL_SHEDS_CONFIG_FILE="/tmp/tmpu7x63f_i/tool_sheds_conf.xml" +GALAXY_CONFIG_OVERRIDE_MANAGE_DEPENDENCY_RELATIONSHIPS="False" +GALAXY_CONFIG_OVERRIDE_JOB_WORKING_DIRECTORY="/tmp/tmpu7x63f_i/job_working_directory" +GALAXY_CONFIG_OVERRIDE_TEMPLATE_CACHE_PATH="/tmp/tmpu7x63f_i/compiled_templates" +GALAXY_CONFIG_OVERRIDE_CITATION_CACHE_TYPE="file" +GALAXY_CONFIG_OVERRIDE_CITATION_CACHE_DATA_DIR="/tmp/tmpu7x63f_i/citations/data" +GALAXY_CONFIG_OVERRIDE_CITATION_CACHE_LOCK_DIR="/tmp/tmpu7x63f_i/citations/lock" +GALAXY_CONFIG_OVERRIDE_DATABASE_AUTO_MIGRATE="True" +GALAXY_CONFIG_OVERRIDE_ENABLE_BETA_TOOL_FORMATS="True" +GALAXY_CONFIG_OVERRIDE_ID_SECRET="c438e0e1bc688bbd3d5883de201f31df" +GALAXY_CONFIG_OVERRIDE_LOG_LEVEL="DEBUG" +GALAXY_CONFIG_OVERRIDE_DEBUG="true" +GALAXY_CONFIG_OVERRIDE_WATCH_TOOLS="auto" +GALAXY_CONFIG_OVERRIDE_DEFAULT_JOB_SHELL="/bin/bash" +GALAXY_CONFIG_OVERRIDE_TOOL_DATA_TABLE_CONFIG_PATH="/scratch/rico/galaxytools/tools/ncbi_fcs_adaptor/tool_data_table_conf.xml.test" +GALAXY_CONFIG_OVERRIDE_INTEGRATED_TOOL_PANEL_CONFIG="/tmp/tmpu7x63f_i/integrated_tool_panel_conf.xml" +GALAXY_CONFIG_OVERRIDE_MIGRATED_TOOLS_CONFIG="/tmp/tmpu7x63f_i/empty_tool_conf.xml" +GALAXY_CONFIG_OVERRIDE_TEST_DATA_DIR="/scratch/rico/galaxytools/tools/ncbi_fcs_adaptor/test-data" +GALAXY_CONFIG_OVERRIDE_SHED_DATA_MANAGER_CONFIG_FILE="/tmp/tmpu7x63f_i/shed_data_manager_conf.xml" +GALAXY_CONFIG_OVERRIDE_OUTPUTS_TO_WORKING_DIRECTORY="True" +GALAXY_CONFIG_OVERRIDE_OBJECT_STORE_STORE_BY="uuid" +GALAXY_CONFIG_OVERRIDE_DATABASE_CONNECTION="sqlite:////tmp/tmpu7x63f_i/galaxy.sqlite?isolation_level=IMMEDIATE" +GALAXY_CONFIG_OVERRIDE_JOB_CONFIG_FILE="/scratch/rico/galaxytools/tools/ncbi_fcs_adaptor/planemo_job_conf.xml" +GALAXY_CONFIG_OVERRIDE_JOB_METRICS_CONFIG_FILE="/tmp/tmpu7x63f_i/job_metrics_conf.xml" +GALAXY_CONFIG_OVERRIDE_DEPENDENCY_RESOLVERS_CONFIG_FILE="/tmp/tmpu7x63f_i/resolvers_conf.xml" +GALAXY_SKIP_CLIENT_BUILD="1" +GALAXY_DEVELOPMENT_ENVIRONMENT="1" +GALAXY_LOG="main.log" +GALAXY_PID="main.pid" +GALAXY_CONFIG_FILE="/tmp/tmpu7x63f_i/galaxy.yml" +GRAVITY_STATE_DIR="/tmp/tmpu7x63f_i/gravity" +SUPERVISORD_SOCKET="/tmp/tmp2cd4yyct.sock" +============================ +galaxy.util.commands WARNING 2024-02-23 13:23:05,939: Passing program arguments as a string may be a security hazard if combined with untrusted input +Set $GALAXY_VIRTUAL_ENV to /scratch/rico/.planemo/gx_venv_3 +Virtual environment directory does not exist. +created virtual environment CPython3.7.3.final.0-64 in 822ms + creator CPython3Posix(dest=/scratch/rico/.planemo/gx_venv_3, clear=False, no_vcs_ignore=False, global=False) + seeder FromAppData(download=False, pip=bundle, setuptools=bundle, wheel=bundle, via=copy, app_data_dir=/afs/bx.psu.edu/home/rico/.local/share/virtualenv) + added seed packages: pip==23.3.2, setuptools==68.0.0, wheel==0.42.0 + activators BashActivator,CShellActivator,FishActivator,NushellActivator,PowerShellActivator,PythonActivator +Created virtualenv +Set $GALAXY_VIRTUAL_ENV to /scratch/rico/.planemo/gx_venv_3 +Virtual environment directory exists. +Activated a virtualenv for Galaxy +/scratch/rico/.planemo/gx_venv_3 +/scratch/rico/galaxy +/scratch/rico/.planemo/gx_venv_3/bin/python +/scratch/rico/.planemo/gx_venv_3/bin/pip +/scratch/rico/.planemo/gx_venv_3 +/scratch/rico/.planemo/gx_venv_3 +. +.. +check_model.sh +.ci +.circleci +CITATION +client +CODE_OF_CONDUCT.md +config +contrib +CONTRIBUTING.md +CONTRIBUTORS.md +.coveragerc +cron +database +doc +.dockerignore +extract_dataset_parts.sh +.flake8 +.git +.gitattributes +.git-blame-ignore-revs +.github +.gitignore +.gitpod.yml +hooks +.isort.cfg +.k8s_ci.Dockerfile +lib +LICENSE.txt +main.log +Makefile +manage_db.sh +manage_toolshed_db.sh +mypy.ini +package.json +packages +.pre-commit-config.yaml.sample +pyproject.toml +pytest.ini +README.rst +.redocly.lint-ignore.yaml +.redocly.yaml +requirements.txt +rolling_restart.sh +run_reports.sh +run.sh +run_tests.sh +run_tool_shed.sh +scripts +SECURITY.md +static +templates +test +test-data +tool-data +tools +tox.ini +tsconfig.json +.vscode +Activating virtualenv at /scratch/rico/.planemo/gx_venv_3 +Requirement already satisfied: pip>=20.3 in /scratch/rico/.planemo/gx_venv_3/lib/python3.7/site-packages (23.3.2) +Requirement already satisfied: wheel in /scratch/rico/.planemo/gx_venv_3/lib/python3.7/site-packages (0.42.0) + +[notice] A new release of pip is available: 23.3.2 -> 24.0 +[notice] To update, run: pip install --upgrade pip +Looking in indexes: https://wheels.galaxyproject.org/simple, https://pypi.python.org/simple +Ignoring billiard: markers 'python_version >= "3.8" and python_version < "3.12"' don't match your environment +Ignoring celery: markers 'python_version >= "3.8" and python_version < "3.12"' don't match your environment +Ignoring colorama: markers 'python_version >= "3.7" and python_version < "3.12" and platform_system == "Windows"' don't match your environment +Ignoring kombu: markers 'python_version >= "3.8" and python_version < "3.12"' don't match your environment +Ignoring numpy: markers 'python_version >= "3.8" and python_version < "3.9"' don't match your environment +Ignoring numpy: markers 'python_version >= "3.9" and python_version < "3.12"' don't match your environment +Ignoring pyreadline3: markers 'sys_platform == "win32" and python_version >= "3.8" and python_version < "3.12"' don't match your environment +Ignoring pyreadline: markers 'sys_platform == "win32" and python_version < "3.8" and python_version >= "3.7"' don't match your environment +Ignoring tzdata: markers 'python_version >= "3.7" and python_version < "3.12" and platform_system == "Windows"' don't match your environment +Collecting a2wsgi==1.7.0 (from -r requirements.txt (line 1)) + Using cached a2wsgi-1.7.0-py3-none-any.whl.metadata (1.6 kB) +Collecting adal==1.2.7 (from -r requirements.txt (line 2)) + Using cached adal-1.2.7-py2.py3-none-any.whl (55 kB) +Collecting aiobotocore==2.4.2 (from -r requirements.txt (line 3)) + Using cached aiobotocore-2.4.2-py3-none-any.whl.metadata (19 kB) +Collecting aiodataloader==0.4.0 (from -r requirements.txt (line 4)) + Using 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gunicorn-21.2.0-py3-none-any.whl.metadata (4.1 kB) +Collecting gxformat2==0.18.0 (from -r requirements.txt (line 86)) + Using cached gxformat2-0.18.0-py2.py3-none-any.whl.metadata (11 kB) +Collecting h11==0.14.0 (from -r requirements.txt (line 87)) + Using cached h11-0.14.0-py3-none-any.whl.metadata (8.2 kB) +Collecting h5grove==1.3.0 (from -r requirements.txt (line 88)) + Using cached h5grove-1.3.0-py3-none-any.whl.metadata (3.4 kB) +Collecting h5py==3.8.0 (from -r requirements.txt (line 89)) + Using cached h5py-3.8.0-cp37-cp37m-manylinux_2_17_x86_64.manylinux2014_x86_64.whl.metadata (2.5 kB) +Collecting humanfriendly==10.0 (from -r requirements.txt (line 90)) + Using cached humanfriendly-10.0-py2.py3-none-any.whl (86 kB) +Collecting idna==3.5 (from -r requirements.txt (line 91)) + Using cached idna-3.5-py3-none-any.whl.metadata (9.9 kB) +Collecting importlib-metadata==4.13.0 (from -r requirements.txt (line 92)) + Using cached importlib_metadata-4.13.0-py3-none-any.whl.metadata (4.9 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+Using cached tinydb-4.8.0-py3-none-any.whl (24 kB) +Using cached tomli-2.0.1-py3-none-any.whl (12 kB) +Using cached tornado-6.2-cp37-abi3-manylinux_2_5_x86_64.manylinux1_x86_64.manylinux_2_17_x86_64.manylinux2014_x86_64.whl (423 kB) +Using cached tqdm-4.66.1-py3-none-any.whl (78 kB) +Using cached tuspy-1.0.1-py3-none-any.whl (14 kB) +Using cached tuswsgi-0.5.5-py2.py3-none-any.whl (6.9 kB) +Using cached typing_extensions-4.7.1-py3-none-any.whl (33 kB) +Using cached tzlocal-5.1-py3-none-any.whl (21 kB) +Using cached ubiquerg-0.6.3-py2.py3-none-any.whl (13 kB) +Using cached urllib3-1.26.18-py2.py3-none-any.whl (143 kB) +Using cached uvicorn-0.22.0-py3-none-any.whl (58 kB) +Using cached uvloop-0.18.0-cp37-cp37m-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (4.3 MB) +Using cached vine-5.1.0-py3-none-any.whl (9.6 kB) +Using cached wcwidth-0.2.12-py2.py3-none-any.whl (34 kB) +Using cached wrapt-1.16.0-cp37-cp37m-manylinux_2_5_x86_64.manylinux1_x86_64.manylinux_2_17_x86_64.manylinux2014_x86_64.whl (77 kB) +Using cached yacman-0.9.2-py3-none-any.whl (18 kB) +Using cached yarl-1.9.3-cp37-cp37m-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (288 kB) +Using cached zipp-3.15.0-py3-none-any.whl (6.8 kB) +Using cached zstandard-0.21.0-cp37-cp37m-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (2.7 MB) +Installing collected packages: zipstream-new, whoosh, webencodings, wcwidth, ubiquerg, sqlitedict, sortedcontainers, shellescape, repoze-lru, pytz, pyeventsystem, parsley, msgpack, mistune, mercurial, edam-ontology, docopt, dictobj, cached-property, boto, boltons, billiard, beaker, bagit, arcp, appdirs, aniso8601, zstandard, zipp, wrapt, webob, vine, uvloop, urllib3, typing-extensions, tqdm, tornado, tomli, tinydb, tenacity, svgwrite, supervisor, sqlparse, sniffio, six, setuptools-scm, ruamel-yaml-clib, regex, pyzmq, pyyaml, python-multipart, python-magic, pysam, pyrsistent, pyparsing, pygments, pycryptodome, pycparser, pyasn1, psutil, prompt-toolkit, pkgutil-resolve-name, pebble, packaging, orjson, oauthlib, numpy, nodeenv, mypy-extensions, multidict, mdurl, markupsafe, lxml, lagom, jsonref, jmespath, isal, idna, humanfriendly, greenlet, future, fsspec, frozenlist, filelock, exceptiongroup, docutils, dnspython, defusedxml, decorator, cheetah3, charset-normalizer, certifi, bcrypt, backports-zoneinfo, babel, attmap, asynctest, aiofiles, a2wsgi, yarl, tzlocal, tuswsgi, tifffile, ruamel-yaml, rsa, routes, requests, python3-openid, python-dateutil, pyjwt, pydot, pydantic, promise, paste, oyaml, networkx, mrcfile, markdown-it-py, jinja2, isodate, importlib-resources, importlib-metadata, h5py, h11, graphql-core, galaxy-sequence-utils, fs, email-validator, ecdsa, dparse, deprecation, coloredlogs, circus, cffi, bx-python, bleach, async-timeout, apispec, anyio, amqp, aiosignal, aioitertools, aiodataloader, starlette, sqlalchemy, rich, requests-unixsocket, requests-toolbelt, requests-oauthlib, rdflib, python-jose, pynacl, pylibmagic, pykwalify, pyfaidx, pydantic-tes, pastedeploy, markdown, mako, kombu, isa-rwval, h5grove, gunicorn, graphql-relay, cryptography, conda-package-streaming, cloudbridge, click, cachecontrol, botocore, bagit-profile, attrs, argcomplete, uvicorn, starlette-context, social-auth-core, prov, paramiko, jsonschema, gravity, graphene, fastapi, click-repl, click-plugins, click-didyoumean, bdbag, alembic, aiohttp, adal, yacman, tuspy, starlette-graphene3, schema-salad, pulsar-galaxy-lib, msal, graphene-sqlalchemy, fastapi-utils, cloudauthz, celery, aiobotocore, s3fs, refgenconf, cwl-upgrader, bioblend, gxformat2, cwl-utils, galaxy2cwl, cwltool, rocrate +Successfully installed a2wsgi-1.7.0 adal-1.2.7 aiobotocore-2.4.2 aiodataloader-0.4.0 aiofiles-23.2.1 aiohttp-3.8.6 aioitertools-0.11.0 aiosignal-1.3.1 alembic-1.12.1 amqp-5.2.0 aniso8601-9.0.1 anyio-3.7.1 apispec-6.3.0 appdirs-1.4.4 arcp-0.2.1 argcomplete-3.1.2 async-timeout-4.0.3 asynctest-0.13.0 attmap-0.13.2 attrs-23.1.0 babel-2.13.1 backports-zoneinfo-0.2.1 bagit-1.8.1 bagit-profile-1.3.1 bcrypt-4.0.1 bdbag-1.7.1 beaker-1.12.1 billiard-3.6.4.0 bioblend-1.2.0 bleach-6.0.0 boltons-23.1.1 boto-2.49.0 botocore-1.27.59 bx-python-0.10.0 cachecontrol-0.13.1 cached-property-1.5.2 celery-5.2.7 certifi-2023.11.17 cffi-1.15.1 charset-normalizer-3.3.2 cheetah3-3.2.6.post1 circus-0.18.0 click-8.1.7 click-didyoumean-0.3.0 click-plugins-1.1.1 click-repl-0.3.0 cloudauthz-0.6.0 cloudbridge-3.2.0 coloredlogs-15.0.1 conda-package-streaming-0.9.0 cryptography-41.0.5 cwl-upgrader-1.2.8 cwl-utils-0.28 cwltool-3.1.20221109155812 decorator-5.1.1 defusedxml-0.7.1 deprecation-2.1.0 dictobj-0.4 dnspython-2.3.0 docopt-0.6.2 docutils-0.18.1 dparse-0.6.3 ecdsa-0.18.0 edam-ontology-1.25.2 email-validator-2.0.0.post2 exceptiongroup-1.2.0 fastapi-0.98.0 fastapi-utils-0.2.1 filelock-3.12.2 frozenlist-1.3.3 fs-2.4.16 fsspec-2023.1.0 future-0.18.3 galaxy-sequence-utils-1.1.5 galaxy2cwl-0.1.4 graphene-3.3 graphene-sqlalchemy-3.0.0b3 graphql-core-3.2.3 graphql-relay-3.2.0 gravity-1.0.4 greenlet-2.0.2 gunicorn-21.2.0 gxformat2-0.18.0 h11-0.14.0 h5grove-1.3.0 h5py-3.8.0 humanfriendly-10.0 idna-3.5 importlib-metadata-4.13.0 importlib-resources-5.12.0 isa-rwval-0.10.10 isal-1.3.0 isodate-0.6.1 jinja2-3.1.2 jmespath-1.0.1 jsonref-1.1.0 jsonschema-4.17.3 kombu-5.2.4 lagom-2.6.0 lxml-4.9.3 mako-1.2.4 markdown-3.4.4 markdown-it-py-2.2.0 markupsafe-2.1.3 mdurl-0.1.2 mercurial-6.6 mistune-2.0.5 mrcfile-1.4.3 msal-1.25.0 msgpack-1.0.5 multidict-6.0.4 mypy-extensions-1.0.0 networkx-2.5 nodeenv-1.8.0 numpy-1.21.6 oauthlib-3.2.2 orjson-3.9.7 oyaml-1.0 packaging-23.2 paramiko-3.3.1 parsley-1.3 paste-3.7.1 pastedeploy-3.1.0 pebble-5.0.4 pkgutil-resolve-name-1.3.10 promise-2.3 prompt-toolkit-3.0.41 prov-1.5.1 psutil-5.9.6 pulsar-galaxy-lib-0.15.5 pyasn1-0.5.1 pycparser-2.21 pycryptodome-3.19.0 pydantic-1.10.13 pydantic-tes-0.1.5 pydot-1.4.2 pyeventsystem-0.1.0 pyfaidx-0.7.2.2 pygments-2.17.2 pyjwt-2.8.0 pykwalify-1.8.0 pylibmagic-0.5.0 pynacl-1.5.0 pyparsing-3.0.9 pyrsistent-0.19.3 pysam-0.22.0 python-dateutil-2.8.2 python-jose-3.3.0 python-magic-0.4.27 python-multipart-0.0.7 python3-openid-3.2.0 pytz-2023.3.post1 pyyaml-6.0.1 pyzmq-25.1.1 rdflib-6.2.0 refgenconf-0.12.2 regex-2023.10.3 repoze-lru-0.7 requests-2.31.0 requests-oauthlib-1.3.1 requests-toolbelt-1.0.0 requests-unixsocket-0.3.0 rich-13.7.0 rocrate-0.9.0 routes-2.5.1 rsa-4.9 ruamel-yaml-0.17.21 ruamel-yaml-clib-0.2.8 s3fs-2023.1.0 schema-salad-8.4.20230808163024 setuptools-scm-5.0.2 shellescape-3.8.1 six-1.16.0 sniffio-1.3.0 social-auth-core-4.0.3 sortedcontainers-2.4.0 sqlalchemy-1.4.50 sqlitedict-2.1.0 sqlparse-0.4.4 starlette-0.27.0 starlette-context-0.3.5 starlette-graphene3-0.6.0 supervisor-4.2.5 svgwrite-1.4.3 tenacity-8.2.3 tifffile-2021.11.2 tinydb-4.8.0 tomli-2.0.1 tornado-6.2 tqdm-4.66.1 tuspy-1.0.1 tuswsgi-0.5.5 typing-extensions-4.7.1 tzlocal-5.1 ubiquerg-0.6.3 urllib3-1.26.18 uvicorn-0.22.0 uvloop-0.18.0 vine-5.1.0 wcwidth-0.2.12 webencodings-0.5.1 webob-1.8.7 whoosh-2.7.4 wrapt-1.16.0 yacman-0.9.2 yarl-1.9.3 zipp-3.15.0 zipstream-new-1.1.8 zstandard-0.21.0 + +[notice] A new release of pip is available: 23.3.2 -> 24.0 +[notice] To update, run: pip install --upgrade pip + +[notice] A new release of pip is available: 23.3.2 -> 24.0 +[notice] To update, run: pip install --upgrade pip +Looking in indexes: https://wheels.galaxyproject.org/simple, https://pypi.python.org/simple +Collecting watchdog (from -r /dev/stdin (line 1)) + Using cached watchdog-3.0.0-py3-none-manylinux2014_x86_64.whl.metadata (36 kB) +Using cached watchdog-3.0.0-py3-none-manylinux2014_x86_64.whl (82 kB) +Installing collected packages: watchdog +Successfully installed watchdog-3.0.0 + +[notice] A new release of pip is available: 23.3.2 -> 24.0 +[notice] To update, run: pip install --upgrade pip +Installing node into /scratch/rico/.planemo/gx_venv_3 with nodeenv. + * Install prebuilt node (18.12.1) ..... done. + * Appending data to /scratch/rico/.planemo/gx_venv_3/bin/activate + * Appending data to /scratch/rico/.planemo/gx_venv_3/bin/activate.fish +The Galaxy client build is being skipped due to the SKIP_CLIENT_BUILD environment variable. +Activating virtualenv at /scratch/rico/.planemo/gx_venv_3 +Executing: galaxyctl start +Adding service gunicorn +supervisord is not running +Adding service celery +supervisord is not running +Adding service celery-beat +supervisord is not running +celery STARTING +celery-beat STARTING +gunicorn STARTING +Log files are in /tmp/tmpu7x63f_i/gravity/log +run command exited with return code 0 +urllib3.connectionpool DEBUG 2024-02-23 13:24:38,213: Starting new HTTP connection (1): 127.0.0.1:39427 +[00] Galaxy not up yet... HTTPConnectionPool(host='127.0.0.1', port=39427): Max retries exceeded with url: /api/version (Cause +urllib3.connectionpool DEBUG 2024-02-23 13:24:39,218: Starting new HTTP connection (1): 127.0.0.1:39427 +[01] Galaxy not up yet... HTTPConnectionPool(host='127.0.0.1', port=39427): Max retries exceeded with url: /api/version (Cause +urllib3.connectionpool DEBUG 2024-02-23 13:24:40,221: Starting new HTTP connection (1): 127.0.0.1:39427 +[02] Galaxy not up yet... HTTPConnectionPool(host='127.0.0.1', port=39427): Max retries exceeded with url: /api/version (Cause +urllib3.connectionpool DEBUG 2024-02-23 13:24:41,226: Starting new HTTP connection (1): 127.0.0.1:39427 +[03] Galaxy not up yet... HTTPConnectionPool(host='127.0.0.1', port=39427): Max retries exceeded with url: /api/version (Cause +urllib3.connectionpool DEBUG 2024-02-23 13:24:42,231: Starting new HTTP connection (1): 127.0.0.1:39427 +[04] Galaxy not up yet... HTTPConnectionPool(host='127.0.0.1', port=39427): Max retries exceeded with url: /api/version (Cause +urllib3.connectionpool DEBUG 2024-02-23 13:24:43,236: Starting new HTTP connection (1): 127.0.0.1:39427 +[05] Galaxy not up yet... HTTPConnectionPool(host='127.0.0.1', port=39427): Max retries exceeded with url: /api/version (Cause +galaxy.jobs DEBUG 2024-02-23 13:24:43,065 [pN:main,p:76107,tN:MainThread] Loading job configuration from /scratch/rico/galaxytools/tools/ncbi_fcs_adaptor/planemo_job_conf.xml +galaxy.jobs DEBUG 2024-02-23 13:24:43,065 [pN:main,p:76107,tN:MainThread] Read job configuration from file: /scratch/rico/galaxytools/tools/ncbi_fcs_adaptor/planemo_job_conf.xml +galaxy.web_stack.handlers INFO 2024-02-23 13:24:43,073 [pN:main,p:76107,tN:MainThread] JobConfiguration: No job handler assignment method is set, defaulting to 'HANDLER_ASSIGNMENT_METHODS.DB_SKIP_LOCKED', set the `assign_with` attribute on <handlers> to override the default +galaxy.jobs INFO 2024-02-23 13:24:43,073 [pN:main,p:76107,tN:MainThread] Job handler assignment methods set to: db-skip-locked +galaxy.web_stack.handlers DEBUG 2024-02-23 13:24:43,074 [pN:main,p:76107,tN:MainThread] default set to child with id or tag 'docker_local' +galaxy.jobs DEBUG 2024-02-23 13:24:43,074 [pN:main,p:76107,tN:MainThread] Done loading job configuration +galaxy.security.vault WARNING 2024-02-23 13:24:43,193 [pN:main,p:76107,tN:MainThread] No vault configured. We recommend defining the vault_config_file setting in galaxy.yml +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,221 [pN:main,p:76107,tN:MainThread] Loading datatypes from /scratch/rico/galaxy/lib/galaxy/config/sample/datatypes_conf.xml.sample +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,221 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension source.h. +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,221 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension source.c. +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,221 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension source.cpp. +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,221 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension source.py. +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,221 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension source.go. +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,222 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension source.rs. +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,222 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension source.cs. +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,222 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:Binary from the datatype registry for extension hep.root. +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,222 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:JP2 from the datatype registry for extension jp2. +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,222 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:Ab1 from the datatype registry for extension ab1. +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,222 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.assembly:Amos from the datatype registry for extension afg. +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,223 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.goldenpath:GoldenPath from the datatype registry for extension agp. +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,223 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.anvio:AnvioComposite from the datatype registry for extension anvio_cog_profile. +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,223 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.anvio:AnvioComposite from the datatype registry for extension anvio_composite. +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,223 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:Data from the datatype registry for extension anvio_classifier. +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,223 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.anvio:AnvioContigsDB from the datatype registry for extension anvio_contigs_db. +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,223 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.anvio:AnvioDB from the datatype registry for extension anvio_db. +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,224 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.anvio:AnvioGenomesDB from the datatype registry for extension anvio_genomes_db. +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,224 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.anvio:AnvioPanDB from the datatype registry for extension anvio_pan_db. +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,224 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.anvio:AnvioComposite from the datatype registry for extension anvio_pfam_profile. +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,224 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.anvio:AnvioProfileDB from the datatype registry for extension anvio_profile_db. +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,224 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.anvio:AnvioSamplesDB from the datatype registry for extension anvio_samples_db. +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,224 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.text:Json from the datatype registry for extension anvio_state. +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,224 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.anvio:AnvioStructureDB from the datatype registry for extension anvio_structure_db. +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,224 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.tabular:TSV from the datatype registry for extension anvio_variability. +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,224 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.text:Arff from the datatype registry for extension arff. +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,224 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.text:Paf from the datatype registry for extension paf. +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,224 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.text:Gfa1 from the datatype registry for extension gfa1. +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,224 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.text:Gfa2 from the datatype registry for extension gfa2. +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,224 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:GenericAsn1 from the datatype registry for extension asn1. +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,225 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:GenericAsn1Binary from the datatype registry for extension asn1-binary. +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,225 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.sequence:Axt from the datatype registry for extension axt. +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,225 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.tabular:FeatureLocationIndex from the datatype registry for extension fli. +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,225 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:Bam from the datatype registry for extension bam. +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,225 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:Binary from the datatype registry for extension bai. +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,225 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:BamInputSorted from the datatype registry for extension qname_input_sorted.bam. +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,225 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:BamQuerynameSorted from the datatype registry for extension qname_sorted.bam. +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,225 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:BamNative from the datatype registry for extension unsorted.bam. +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,225 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:ProBam from the datatype registry for extension probam. +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,225 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:CRAM from the datatype registry for extension cram. +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,225 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.interval:Bed from the datatype registry for extension bed. +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,225 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.interval:BedGraph from the datatype registry for extension bedgraph. +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,225 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.interval:BedStrict from the datatype registry for extension bedstrict. +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,225 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.interval:Bed6 from the datatype registry for extension bed6. +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,225 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.interval:Bed12 from the datatype registry for extension bed12. +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,226 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.interval:ProBed from the datatype registry for extension probed. +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,226 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.chrominfo:ChromInfo from the datatype registry for extension len. +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,226 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:DAA from the datatype registry for extension daa. +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,226 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:RMA6 from the datatype registry for extension rma6. +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,226 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:DMND from the datatype registry for extension dmnd. +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,226 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:Parquet from the datatype registry for extension parquet. +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,226 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:Idat from the datatype registry for extension idat. +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,226 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:BigBed from the datatype registry for extension bigbed. +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,226 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:BigWig from the datatype registry for extension bigwig. +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,226 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:Binary from the datatype registry for extension cxb. +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,226 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.interval:ChromatinInteractions from the datatype registry for extension chrint. +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,227 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.tabular:CSV from the datatype registry for extension csv. +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,227 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.tabular:TSV from the datatype registry for extension tsv. +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,227 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.tabular:TSV from the datatype registry for extension intermine_tabular. +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,227 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.interval:CustomTrack from the datatype registry for extension customtrack. +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,227 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.ngsindex:BowtieColorIndex from the datatype registry for extension bowtie_color_index. +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,227 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.ngsindex:BowtieBaseIndex from the datatype registry for extension bowtie_base_index. +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,227 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.sequence:csFasta from the datatype registry for extension csfasta. +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,227 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:Data from the datatype registry for extension data. +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,227 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:Binary from the datatype registry for extension gz. +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,227 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:Binary from the datatype registry for extension binary. +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,227 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.text:Json from the datatype registry for extension d3_hierarchy. +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,228 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.text:ImgtJson from the datatype registry for extension imgt.json. +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,228 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.text:GeoJson from the datatype registry for extension geojson. +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,228 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.text:Json from the datatype registry for extension data_manager_json. +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,228 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.sequence:DotBracket from the datatype registry for extension dbn. +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,228 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.tabular:Tabular from the datatype registry for extension fai. +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,228 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.sequence:Fasta from the datatype registry for extension fasta. +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,228 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.sequence:Fastg from the datatype registry for extension fastg. +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,228 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.sequence:Fastq from the datatype registry for extension fastq. +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,228 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.sequence:FastqSanger from the datatype registry for extension fastqsanger. +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,228 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.sequence:FastqSolexa from the datatype registry for extension fastqsolexa. +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,229 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.sequence:FastqCSSanger from the datatype registry for extension fastqcssanger. +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,229 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.sequence:FastqIllumina from the datatype registry for extension fastqillumina. +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,229 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.sequence:SequenceSplitLocations from the datatype registry for extension fqtoc. +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,229 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.tabular:Eland from the datatype registry for extension eland. +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,229 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.tabular:ElandMulti from the datatype registry for extension elandmulti. +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,229 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.tracks:GeneTrack from the datatype registry for extension genetrack. +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,229 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.interval:Gff from the datatype registry for extension gff. +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,229 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.interval:Gff3 from the datatype registry for extension gff3. +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,229 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.images:Gif from the datatype registry for extension gif. +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,230 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.images:Gmaj from the datatype registry for extension gmaj.zip. +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,230 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension graph_dot. +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,230 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.interval:Gtf from the datatype registry for extension gtf. +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,230 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:Binary from the datatype registry for extension toolshed.gz. +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,230 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:Binary from the datatype registry for extension hdf4. +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,230 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:H5 from the datatype registry for extension h5. +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,230 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:H5 from the datatype registry for extension scool. +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,230 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:Grib from the datatype registry for extension grib. +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,230 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:Loom from the datatype registry for extension loom. +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,230 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:Anndata from the datatype registry for extension h5ad. +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,230 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:Visium from the datatype registry for extension visium.tar.gz. +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,230 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:H5 from the datatype registry for extension mz5. +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,230 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.text:Json from the datatype registry for extension hyphy_results.json. +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,230 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.text:Json from the datatype registry for extension hivtrace. +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,231 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:Cool from the datatype registry for extension cool. +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,231 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:MCool from the datatype registry for extension mcool. +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,231 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:H5MLM from the datatype registry for extension h5mlm. +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,231 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:LudwigModel from the datatype registry for extension ludwig_model. +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,231 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.text:Html from the datatype registry for extension html. +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,231 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.text:Html from the datatype registry for extension ludwig_report.html. +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,231 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.interval:Interval from the datatype registry for extension interval. +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,231 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:Binary from the datatype registry for extension jellyfish. +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,231 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:Binary from the datatype registry for extension ktab. +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,231 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:Binary from the datatype registry for extension hist. +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,231 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:Binary from the datatype registry for extension prof. +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,282 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.isa:IsaTab from the datatype registry for extension isa-tab. +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,282 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.isa:IsaJson from the datatype registry for extension isa-json. +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,282 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.tabular:Tabular from the datatype registry for extension picard_interval_list. +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,282 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension gatk_interval. +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,283 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension gatk_report. +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,283 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.tabular:Tabular from the datatype registry for extension gatk_dbsnp. +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,283 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.tabular:Tabular from the datatype registry for extension gatk_tranche. +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,283 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.tabular:Tabular from the datatype registry for extension gatk_recal. +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,283 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.tabular:Tabular from the datatype registry for extension cnn. +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,283 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.tabular:Tabular from the datatype registry for extension cns. +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,283 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.tabular:Tabular from the datatype registry for extension cnr. +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,283 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension hhr. +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,283 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.images:Jpg from the datatype registry for extension jpg. +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,283 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.images:Tiff from the datatype registry for extension tiff. +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,283 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.images:Tiff from the datatype registry for extension tf2. +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,284 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.images:Tiff from the datatype registry for extension tf8. +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,284 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.images:Tiff from the datatype registry for extension btf. +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,284 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.images:Tiff from the datatype registry for extension tif. +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,284 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.images:Tiff from the datatype registry for extension svs. +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,284 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.images:Tiff from the datatype registry for extension scn. +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,284 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.images:Tiff from the datatype registry for extension bif. +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,284 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.images:OMETiff from the datatype registry for extension ome.tiff. +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,284 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.images:Hamamatsu from the datatype registry for extension vms. +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,284 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.images:Hamamatsu from the datatype registry for extension vmu. +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,284 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.images:Hamamatsu from the datatype registry for extension ndpi. +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,284 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.images:Mirax from the datatype registry for extension mrxs. +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,284 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.images:Sakura from the datatype registry for extension svslide. +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,284 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.images:Bmp from the datatype registry for extension bmp. +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,284 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.images:Im from the datatype registry for extension im. +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,284 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.images:Pcd from the datatype registry for extension pcd. +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,285 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.images:Pcx from the datatype registry for extension pcx. +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,285 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.images:Ppm from the datatype registry for extension ppm. +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,285 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.images:Psd from the datatype registry for extension psd. +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,285 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.images:Xbm from the datatype registry for extension xbm. +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,285 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.images:Xpm from the datatype registry for extension xpm. +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,285 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.images:Rgb from the datatype registry for extension rgb. +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,285 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.images:Pbm from the datatype registry for extension pbm. +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,285 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.images:Pgm from the datatype registry for extension pgm. +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,285 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.images:Nrrd from the datatype registry for extension nrrd. +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,285 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.images:Nrrd from the datatype registry for extension nhdr. +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,285 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.sequence:RNADotPlotMatrix from the datatype registry for extension rna_eps. +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,286 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.qiime2:QIIME2Artifact from the datatype registry for extension qza. +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,286 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.qiime2:QIIME2Visualization from the datatype registry for extension qzv. +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,286 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.qiime2:QIIME2Metadata from the datatype registry for extension qiime2.tabular. +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,286 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:CompressedZipArchive from the datatype registry for extension zip. +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,286 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:CompressedZipArchive from the datatype registry for extension ncbi_genome_dataset.zip. +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,286 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:CompressedArchive from the datatype registry for extension tar. +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,286 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:Directory from the datatype registry for extension directory. +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,286 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.text:Yaml from the datatype registry for extension yaml. +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,286 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.tabular:Tabular from the datatype registry for extension mrm. +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,288 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.proteomics:Dta from the datatype registry for extension dta. +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,288 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.proteomics:Dta2d from the datatype registry for extension dta2d. +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,288 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.proteomics:Edta from the datatype registry for extension edta. +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,288 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.proteomics:PepXml from the datatype registry for extension pepxml. +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,288 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.proteomics:PepXml from the datatype registry for extension raw_pepxml. +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,288 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.proteomics:PepXml from the datatype registry for extension peptideprophet_pepxml. +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,288 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.proteomics:PepXml from the datatype registry for extension interprophet_pepxml. +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,288 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.proteomics:ProtXML from the datatype registry for extension protxml. +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,288 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.proteomics:ParamXml from the datatype registry for extension paramxml. +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,288 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.proteomics:Kroenik from the datatype registry for extension kroenik. +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,288 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.proteomics:PepList from the datatype registry for extension peplist. +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,288 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.proteomics:PSMS from the datatype registry for extension psms. +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,288 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.proteomics:PepXmlReport from the datatype registry for extension pepxml.tsv. +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,289 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.proteomics:ProtXmlReport from the datatype registry for extension protxml.tsv. +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,289 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.proteomics:MascotDat from the datatype registry for extension mascotdat. +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,289 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.proteomics:MzIdentML from the datatype registry for extension mzid. +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,289 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.proteomics:IdXML from the datatype registry for extension idxml. +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,289 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.proteomics:TandemXML from the datatype registry for extension tandem. +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,289 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension sirius.ms. +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,289 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.proteomics:ThermoRAW from the datatype registry for extension thermo.raw. +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,289 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:BafTar from the datatype registry for extension brukerbaf.d.tar. +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,289 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:YepTar from the datatype registry for extension agilentbrukeryep.d.tar. +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,289 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:TdfTar from the datatype registry for extension brukertdf.d.tar. +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,289 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:MassHunterTar from the datatype registry for extension agilentmasshunter.d.tar. +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,289 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:MassLynxTar from the datatype registry for extension watersmasslynx.raw.tar. +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,289 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:WiffTar from the datatype registry for extension wiff.tar. +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,289 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:Wiff2Tar from the datatype registry for extension wiff2.tar. +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,289 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.proteomics:MascotXML from the datatype registry for extension mascotxml. +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,289 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.proteomics:MzTab from the datatype registry for extension mztab. +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,289 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.proteomics:MzTab2 from the datatype registry for extension mztab2. +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,290 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.proteomics:MzML from the datatype registry for extension mzml. +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,290 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.proteomics:NmrML from the datatype registry for extension nmrml. +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,290 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:Meryldb from the datatype registry for extension meryldb. +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,290 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:Bref3 from the datatype registry for extension bref3. +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,290 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.proteomics:Mgf from the datatype registry for extension mgf. +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,290 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.proteomics:Wiff from the datatype registry for extension wiff. +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,290 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.proteomics:Wiff2 from the datatype registry for extension wiff2. +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,290 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.proteomics:MzXML from the datatype registry for extension mzxml. +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,290 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.proteomics:MzData from the datatype registry for extension mzdata. +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,290 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.proteomics:Ms2 from the datatype registry for extension ms2. +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,290 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.proteomics:MzQuantML from the datatype registry for extension mzq. +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,290 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:SQlite from the datatype registry for extension sqlite. +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,290 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:MzSQlite from the datatype registry for extension mz.sqlite. +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,290 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:OSW from the datatype registry for extension osw. +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,290 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:PQP from the datatype registry for extension pqp. +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,291 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.proteomics:TraML from the datatype registry for extension traml. +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,291 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.proteomics:TrafoXML from the datatype registry for extension trafoxml. +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,291 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.proteomics:FeatureXML from the datatype registry for extension featurexml. +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,291 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.proteomics:ConsensusXML from the datatype registry for extension consensusxml. +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,291 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.proteomics:UniProtXML from the datatype registry for extension uniprotxml. +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,291 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.proteomics:XquestXML from the datatype registry for extension xquest.xml. +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,291 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.proteomics:XquestSpecXML from the datatype registry for extension spec.xml. +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,291 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.proteomics:QCML from the datatype registry for extension qcml. +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,291 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.text:Json from the datatype registry for extension mzqc. +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,291 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.proteomics:Msp from the datatype registry for extension msp. +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,291 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.proteomics:SPLibNoIndex from the datatype registry for extension splib_noindex. +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,291 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.proteomics:SPLib from the datatype registry for extension splib. +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,291 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:BlibSQlite from the datatype registry for extension blib. +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,291 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:DlibSQlite from the datatype registry for extension dlib. +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,291 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:ElibSQlite from the datatype registry for extension elib. +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,291 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.proteomics:XHunterAslFormat from the datatype registry for extension hlf. +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,292 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:IdpDB from the datatype registry for extension idpdb. +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,292 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.proteomics:Sf3 from the datatype registry for extension sf3. +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,292 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:Binary from the datatype registry for extension cps. +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,292 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.tabular:ConnectivityTable from the datatype registry for extension ct. +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,292 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:PostgresqlArchive from the datatype registry for extension postgresql. +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,292 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:MongoDBArchive from the datatype registry for extension mongodb. +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,292 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:GeneNoteBook from the datatype registry for extension genenotebook. +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,292 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:SearchGuiArchive from the datatype registry for extension searchgui_archive. +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,292 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:Fast5Archive from the datatype registry for extension fast5.tar. +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,292 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:Fast5ArchiveGz from the datatype registry for extension fast5.tar.gz. +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,292 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:Fast5ArchiveBz2 from the datatype registry for extension fast5.tar.bz2. +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,292 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:CompressedArchive from the datatype registry for extension peptideshaker_archive. +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,292 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.tabular:Tabular from the datatype registry for extension percin. +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,292 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.xml:GenericXml from the datatype registry for extension percout. +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,292 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.tabular:Tabular from the datatype registry for extension hardklor. +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,293 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.tabular:Tabular from the datatype registry for extension kronik. +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,293 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.proteomics:ImzML from the datatype registry for extension imzml. +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,293 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.images:Analyze75 from the datatype registry for extension analyze75. +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,293 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.images:Nifti1 from the datatype registry for extension nii1. +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,293 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.images:Nifti2 from the datatype registry for extension nii2. +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,293 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.images:Gifti from the datatype registry for extension gii. +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,293 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.images:Tck from the datatype registry for extension tck. +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,293 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.images:Trk from the datatype registry for extension trk. +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,293 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.images:Mrc2014 from the datatype registry for extension mrc. +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,293 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.images:Star from the datatype registry for extension star. +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,293 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.proteomics:PEFF from the datatype registry for extension peff. +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,293 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension toml. +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,294 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.flow:FCS from the datatype registry for extension fcs. +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,294 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.tabular:Tabular from the datatype registry for extension flowtext. +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,294 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.tabular:Tabular from the datatype registry for extension flowclr. +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,294 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.tabular:Tabular from the datatype registry for extension flowmfi. +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,294 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.tabular:Tabular from the datatype registry for extension flowstat1. +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,294 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.tabular:Tabular from the datatype registry for extension flowstat2. +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,294 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.tabular:Tabular from the datatype registry for extension flowstat3. +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,294 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.tabular:Tabular from the datatype registry for extension flowscore. +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,294 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:RData from the datatype registry for extension flowframe. +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,294 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:RData from the datatype registry for extension fsom. +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,295 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:RData from the datatype registry for extension flowset. +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,295 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.tabular:Tabular from the datatype registry for extension metacyto_clr.txt. +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,295 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.metacyto:mSummary from the datatype registry for extension metacyto_summary.txt. +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,295 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.metacyto:mStats from the datatype registry for extension metacyto_stats.txt. +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,295 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:CompressedArchive from the datatype registry for extension deeptools_compute_matrix_archive. +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,295 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:CompressedArchive from the datatype registry for extension deeptools_coverage_matrix. +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,295 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:NetCDF from the datatype registry for extension netcdf. +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,295 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.images:Eps from the datatype registry for extension eps. +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,295 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.images:Rast from the datatype registry for extension rast. +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,295 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.images:Laj from the datatype registry for extension laj. +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,295 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.sequence:Lav from the datatype registry for extension lav. +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,296 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.sequence:Maf from the datatype registry for extension maf. +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,296 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.sequence:MafCustomTrack from the datatype registry for extension mafcustomtrack. +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,296 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.tabular:MatrixMarket from the datatype registry for extension mtx. +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,296 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.tabular:CMAP from the datatype registry for extension cmap. +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,296 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.interval:ENCODEPeak from the datatype registry for extension encodepeak. +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,296 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.images:Pdf from the datatype registry for extension pdf. +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,296 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.tabular:Pileup from the datatype registry for extension pileup. +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,296 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.tabular:Psl from the datatype registry for extension psl. +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,296 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.text:Obo from the datatype registry for extension obo. +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,296 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.xml:Owl from the datatype registry for extension owl. +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,296 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.images:Png from the datatype registry for extension png. +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,296 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.qualityscore:QualityScore from the datatype registry for extension qual. +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,296 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.qualityscore:QualityScoreSolexa from the datatype registry for extension qualsolexa. +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,296 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.qualityscore:QualityScoreIllumina from the datatype registry for extension qualillumina. +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,296 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.qualityscore:QualityScoreSOLiD from the datatype registry for extension qualsolid. +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,296 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.qualityscore:QualityScore454 from the datatype registry for extension qual454. +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,297 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.assembly:Roadmaps from the datatype registry for extension roadmaps. +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,297 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.tabular:Sam from the datatype registry for extension sam. +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,297 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:Scf from the datatype registry for extension scf. +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,297 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.assembly:Sequences from the datatype registry for extension sequences. +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,297 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.text:SnpEffDb from the datatype registry for extension snpeffdb. +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,297 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.text:SnpSiftDbNSFP from the datatype registry for extension snpsiftdbnsfp. +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,297 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.tabular:Tabular from the datatype registry for extension dbnsfp.tabular. +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,297 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:Sff from the datatype registry for extension sff. +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,297 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:Sra from the datatype registry for extension sra. +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,297 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.tabular:SraManifest from the datatype registry for extension sra_manifest.tabular. +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,297 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.xml:GenericXml from the datatype registry for extension svg. +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,297 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.tabular:Taxonomy from the datatype registry for extension taxonomy. +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,297 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.tabular:Tabular from the datatype registry for extension tabular. +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,298 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:TwoBit from the datatype registry for extension twobit. +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,298 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:SQmass from the datatype registry for extension sqmass. +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,298 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:GeminiSQLite from the datatype registry for extension gemini.sqlite. +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,298 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:ChiraSQLite from the datatype registry for extension chira.sqlite. +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,298 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:CuffDiffSQlite from the datatype registry for extension cuffdiff.sqlite. +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,298 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:GAFASQLite from the datatype registry for extension gafa.sqlite. +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,298 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:NcbiTaxonomySQlite from the datatype registry for extension ncbitaxonomy.sqlite. +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,298 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension txt. +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,298 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:LineCount from the datatype registry for extension linecount. +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,298 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.sequence:MemePsp from the datatype registry for extension memepsp. +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,298 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.xml:MEMEXml from the datatype registry for extension memexml. +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,298 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.xml:CisML from the datatype registry for extension cisml. +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,298 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.xml:GenericXml from the datatype registry for extension xml. +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,298 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.xml:GenericXml from the datatype registry for extension xsd. +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,298 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.xml:Dzi from the datatype registry for extension dzi. +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,298 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.tabular:Vcf from the datatype registry for extension vcf. +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,299 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:Bcf from the datatype registry for extension bcf. +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,299 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:Bcf from the datatype registry for extension bcf_bgzip. +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,299 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:BcfUncompressed from the datatype registry for extension bcf_uncompressed. +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,299 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.assembly:Velvet from the datatype registry for extension velvet. +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,299 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.interval:Wiggle from the datatype registry for extension wig. +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,300 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:Binary from the datatype registry for extension interval_index. +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,300 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:Binary from the datatype registry for extension odgi. +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,300 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:CompressedArchive from the datatype registry for extension vg. +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,300 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:Binary from the datatype registry for extension xg. +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,300 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:Binary from the datatype registry for extension protobuf2. +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,300 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:Binary from the datatype registry for extension protobuf3. +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,300 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:Binary from the datatype registry for extension onnx. +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,300 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:Binary from the datatype registry for extension tabix. +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,300 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.interval:IntervalTabix from the datatype registry for extension interval_tabix.gz. +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,300 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.interval:JuicerMediumTabix from the datatype registry for extension juicer_medium_tabix.gz. +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,300 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.interval:BedTabix from the datatype registry for extension bed_tabix.gz. +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,300 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.interval:GffTabix from the datatype registry for extension gff_tabix.gz. +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,300 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:Binary from the datatype registry for extension bgzip. +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,301 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.tabular:VcfGz from the datatype registry for extension vcf_bgzip. +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,301 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:Binary from the datatype registry for extension bus. +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,301 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:Binary from the datatype registry for extension kallisto.idx. +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,301 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.xml:Phyloxml from the datatype registry for extension phyloxml. +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,301 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:Newick from the datatype registry for extension newick. +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,301 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:Newick from the datatype registry for extension nhx. +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,301 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:Nexus from the datatype registry for extension nex. +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,301 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.text:IQTree from the datatype registry for extension iqtree. +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,302 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.mothur:SquareDistanceMatrix from the datatype registry for extension mldist. +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,304 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.genetics:Affybatch from the datatype registry for extension affybatch. +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,304 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.genetics:Eigenstratgeno from the datatype registry for extension eigenstratgeno. +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,304 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.genetics:Eigenstratpca from the datatype registry for extension eigenstratpca. +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,304 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.genetics:Eset from the datatype registry for extension eset. +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,304 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.genetics:Fped from the datatype registry for extension fped. +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,304 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.genetics:Fphe from the datatype registry for extension fphe. +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,304 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.genetics:GenomeGraphs from the datatype registry for extension gg. +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,304 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.genetics:ldIndep from the datatype registry for extension ldindep. +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,304 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.genetics:MAlist from the datatype registry for extension malist. +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,304 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.genetics:Lped from the datatype registry for extension lped. +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,304 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.genetics:Pbed from the datatype registry for extension pbed. +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,304 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.genetics:Pheno from the datatype registry for extension pheno. +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,305 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.genetics:Pphe from the datatype registry for extension pphe. +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,305 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.genetics:RexpBase from the datatype registry for extension rexpbase. +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,305 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.genetics:Rgenetics from the datatype registry for extension rgenetics. +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,305 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.genetics:Snptest from the datatype registry for extension snptest. +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,305 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.genetics:SNPMatrix from the datatype registry for extension snpmatrix. +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,305 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:ExcelXls from the datatype registry for extension xls. +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,305 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.text:Ipynb from the datatype registry for extension ipynb. +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,305 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.text:Json from the datatype registry for extension json. +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,305 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.text:ExpressionJson from the datatype registry for extension expression.json. +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,306 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.graph:Xgmml from the datatype registry for extension xgmml. +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,306 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.graph:Sif from the datatype registry for extension sif. +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,306 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.triples:Triples from the datatype registry for extension triples. +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,306 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.triples:HDT from the datatype registry for extension hdt. +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,306 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.triples:NTriples from the datatype registry for extension nt. +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,306 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.triples:N3 from the datatype registry for extension n3. +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,307 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.triples:Turtle from the datatype registry for extension ttl. +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,307 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.triples:Rdf from the datatype registry for extension rdf. +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,307 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.triples:Jsonld from the datatype registry for extension jsonld. +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,307 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:ExcelXls from the datatype registry for extension excel.xls. +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,307 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:Xlsx from the datatype registry for extension xlsx. +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,307 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:Binary from the datatype registry for extension docx. +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,307 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension btwisted. +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,307 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension cai. +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,307 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension cat_db. +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,307 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension charge. +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,307 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension checktrans. +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,307 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension chips. +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,307 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension codcmp. +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,308 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension coderet. +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,308 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension compseq. +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,308 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension cpgplot. +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,308 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension cpgreport. +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,308 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension cusp. +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,308 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension cut. +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,308 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension dan. +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,308 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension digest. +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,308 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension dreg. +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,308 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension einverted. +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,308 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension epestfind. +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,308 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension equicktandem. +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,308 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension est2genome. +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,308 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension etandem. +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,309 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension freak. +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,309 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension fuzznuc. +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,309 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension fuzzpro. +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,309 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension fuzztran. +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,309 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension garnier. +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,309 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension geecee. +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,309 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension helixturnhelix. +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,309 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension hmoment. +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,309 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension isochore. +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,309 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension match. +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,309 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension nametable. +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,309 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension needle. +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,309 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension newcpgreport. +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,309 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension newcpgseek. +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,310 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension noreturn. +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,310 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension palindrome. +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,310 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension pepcoil. +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,310 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension pepinfo. +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,310 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension pepstats. +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,310 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension polydot. +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,310 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension preg. +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,310 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension prettyseq. +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,310 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension primersearch. +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,310 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension showfeat. +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,310 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension showorf. +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,310 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension sixpack. +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,310 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension strider. +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,310 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension supermatcher. +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,311 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension syco. +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,311 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension textsearch. +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,311 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension vectorstrip. +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,311 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension wobble. +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,311 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension wordcount. +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,311 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension dbmotif. +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,311 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension diffseq. +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,311 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension excel. +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,311 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension feattable. +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,311 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension motif. +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,311 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension regions. +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,311 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension seqtable. +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,311 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension simple. +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,311 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension table. +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,312 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension tagseq. +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,312 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension acedb. +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,312 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension clustal. +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,312 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension codata. +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,312 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension embl. +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,312 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension fitch. +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,312 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension gcg. +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,312 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.sequence:Genbank from the datatype registry for extension genbank. +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,312 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension hennig86. +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,312 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension ig. +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,312 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension jackknifer. +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,312 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension jackknifernon. +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,312 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension mega. +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,313 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension meganon. +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,313 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension ncbi. +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,313 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension nexus. +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,313 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension nexusnon. +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,313 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.phylip:Phylip from the datatype registry for extension phylip. +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,313 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension phylipnon. +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,313 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension pir. +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,313 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension staden. +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,313 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension swiss. +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,314 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.msa:Msf from the datatype registry for extension msf. +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,314 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension markx0. +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,314 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension markx1. +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,314 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension markx10. +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,314 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension markx2. +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,314 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension markx3. +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,314 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension pair. +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,315 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension score. +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,315 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension srs. +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,315 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension srspair. +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,315 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.annotation:SnapHmm from the datatype registry for extension snaphmm. +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,315 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.annotation:Augustus from the datatype registry for extension augustus. +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,315 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:ICM from the datatype registry for extension icm. +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,315 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.msa:InfernalCM from the datatype registry for extension cm. +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,315 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.msa:Hmmer2 from the datatype registry for extension hmm2. +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,315 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.msa:Hmmer3 from the datatype registry for extension hmm3. +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,315 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.msa:Stockholm_1_0 from the datatype registry for extension stockholm. +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,315 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.msa:MauveXmfa from the datatype registry for extension xmfa. +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,316 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.microarrays:Cel from the datatype registry for extension cel. +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,316 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.microarrays:Gpr from the datatype registry for extension gpr. +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,316 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.microarrays:Gal from the datatype registry for extension gal. +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,316 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:RDS from the datatype registry for extension rds. +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,316 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:RDS from the datatype registry for extension phyloseq. +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,316 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:RData from the datatype registry for extension rdata. +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,316 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:RData from the datatype registry for extension rdata.sce. +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,316 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:RData from the datatype registry for extension rdata.xcms.raw. +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,316 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:RData from the datatype registry for extension rdata.msnbase.raw. +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,316 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:RData from the datatype registry for extension rdata.xcms.findchrompeaks. +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,317 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:RData from the datatype registry for extension rdata.xcms.group. +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,317 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:RData from the datatype registry for extension rdata.xcms.retcor. +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,317 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:RData from the datatype registry for extension rdata.xcms.fillpeaks. +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,317 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:RData from the datatype registry for extension rdata.camera.positive. +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,317 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:RData from the datatype registry for extension rdata.camera.negative. +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,317 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:RData from the datatype registry for extension rdata.camera.quick. +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,317 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.hdf5:HDF5SummarizedExperiment from the datatype registry for extension rdata.se. +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,317 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:Binary from the datatype registry for extension rdock_as. +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,317 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:OxliCountGraph from the datatype registry for extension oxlicg. +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,317 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:OxliNodeGraph from the datatype registry for extension oxling. +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,317 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:OxliTagSet from the datatype registry for extension oxlits. +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,318 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:OxliStopTags from the datatype registry for extension oxlist. +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,318 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:OxliSubset from the datatype registry for extension oxliss. +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,318 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:OxliGraphLabels from the datatype registry for extension oxligl. +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,318 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.constructive_solid_geometry:STL from the datatype registry for extension stl. +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,319 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.constructive_solid_geometry:PlyAscii from the datatype registry for extension plyascii. +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,319 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.constructive_solid_geometry:PlyBinary from the datatype registry for extension plybinary. +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,319 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.constructive_solid_geometry:VtkAscii from the datatype registry for extension vtkascii. +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,319 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.constructive_solid_geometry:VtkBinary from the datatype registry for extension vtkbinary. +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,319 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.text:Biom1 from the datatype registry for extension biom1. +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,319 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:Biom2 from the datatype registry for extension biom2. +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,319 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:MashSketch from the datatype registry for extension msh. +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,319 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.interval:ScIdx from the datatype registry for extension scidx. +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,320 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.molecules:SMILES from the datatype registry for extension smi. +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,320 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.molecules:SDF from the datatype registry for extension sdf. +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,320 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.molecules:InChI from the datatype registry for extension inchi. +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,320 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.molecules:MOL from the datatype registry for extension mol. +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,321 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.molecules:MOL2 from the datatype registry for extension mol2. +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,321 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.molecules:CML from the datatype registry for extension cml. +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,321 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.molecules:FPS from the datatype registry for extension fps. +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,321 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.molecules:OBFS from the datatype registry for extension obfs. +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,321 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.molecules:DRF from the datatype registry for extension drf. +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,321 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.molecules:PHAR from the datatype registry for extension phar. +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,321 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.molecules:PDB from the datatype registry for extension pdb. +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,321 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.molecules:PDBQT from the datatype registry for extension pdbqt. +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,321 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.molecules:PQR from the datatype registry for extension pqr. +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,321 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.molecules:Cell from the datatype registry for extension cell. +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,321 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.molecules:CIF from the datatype registry for extension cif. +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,321 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.molecules:XYZ from the datatype registry for extension xyz. +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,321 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.molecules:ExtendedXYZ from the datatype registry for extension extxyz. +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,321 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:Trr from the datatype registry for extension trr. +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,321 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:Dcd from the datatype registry for extension dcd. +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,321 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension top. +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,322 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension prmtop. +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,322 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension itp. +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,322 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension mdp. +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,322 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension ndx. +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,322 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension xvg. +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,322 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:Xtc from the datatype registry for extension xtc. +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,322 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:Cpt from the datatype registry for extension cpt. +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,322 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:Edr from the datatype registry for extension edr. +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,322 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:Binary from the datatype registry for extension tpr. +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,322 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.molecules:GRO from the datatype registry for extension gro. +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,322 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension inpcrd. +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,322 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:Vel from the datatype registry for extension vel. +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,322 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.molecules:grd from the datatype registry for extension grd. +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,322 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.molecules:grdtgz from the datatype registry for extension grd.tgz. +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,323 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.mothur:Otu from the datatype registry for extension mothur.otu. +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,323 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.mothur:Otu from the datatype registry for extension mothur.list. +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,323 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.mothur:Sabund from the datatype registry for extension mothur.sabund. +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,323 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.mothur:Sabund from the datatype registry for extension mothur.rabund. +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,323 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.mothur:GroupAbund from the datatype registry for extension mothur.shared. +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,323 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.mothur:GroupAbund from the datatype registry for extension mothur.relabund. +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,323 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.mothur:Names from the datatype registry for extension mothur.names. +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,323 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.mothur:Group from the datatype registry for extension mothur.design. +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,323 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.mothur:Summary from the datatype registry for extension mothur.summary. +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,323 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.mothur:Group from the datatype registry for extension mothur.groups. +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,323 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.mothur:Oligos from the datatype registry for extension mothur.oligos. +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,323 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.sequence:Fasta from the datatype registry for extension mothur.align. +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,323 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.mothur:AccNos from the datatype registry for extension mothur.accnos. +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,323 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.mothur:AccNos from the datatype registry for extension mothur.otulabels. +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,324 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.tabular:Tabular from the datatype registry for extension mothur.otu.corr. +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,324 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.mothur:SecondaryStructureMap from the datatype registry for extension mothur.map. +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,324 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.mothur:AlignCheck from the datatype registry for extension mothur.align.check. +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,324 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.mothur:AlignReport from the datatype registry for extension mothur.align.report. +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,324 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.mothur:LaneMask from the datatype registry for extension mothur.filter. +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,324 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.mothur:DistanceMatrix from the datatype registry for extension mothur.dist. +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,324 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension mothur.tre. +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,324 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.mothur:PairwiseDistanceMatrix from the datatype registry for extension mothur.pair.dist. +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,324 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.mothur:SquareDistanceMatrix from the datatype registry for extension mothur.square.dist. +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,324 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.mothur:LowerTriangleDistanceMatrix from the datatype registry for extension mothur.lower.dist. +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,324 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.mothur:RefTaxonomy from the datatype registry for extension mothur.ref.taxonomy. +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,324 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.mothur:RefTaxonomy from the datatype registry for extension mothur.seq.taxonomy. +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,324 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.mothur:RefTaxonomy from the datatype registry for extension mothur.rdp.taxonomy. +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,324 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.mothur:ConsensusTaxonomy from the datatype registry for extension mothur.cons.taxonomy. +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,325 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.mothur:TaxonomySummary from the datatype registry for extension mothur.tax.summary. +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,325 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.mothur:Frequency from the datatype registry for extension mothur.freq. +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,325 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.mothur:Quantile from the datatype registry for extension mothur.quan. +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,325 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.mothur:Quantile from the datatype registry for extension mothur.filtered.quan. +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,325 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.mothur:Quantile from the datatype registry for extension mothur.masked.quan. +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,325 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.mothur:Quantile from the datatype registry for extension mothur.filtered.masked.quan. +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,325 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.mothur:Axes from the datatype registry for extension mothur.axes. +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,325 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.mothur:SffFlow from the datatype registry for extension mothur.sff.flow. +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,325 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.mothur:CountTable from the datatype registry for extension mothur.count_table. +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,325 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.neo4j:Neo4jDB from the datatype registry for extension neostore. +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,326 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.neo4j:Neo4jDBzip from the datatype registry for extension neostore.zip. +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,326 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.tracks:UCSCTrackHub from the datatype registry for extension trackhub. +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,326 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.blast:BlastXml from the datatype registry for extension blastxml. +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,326 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.blast:BlastNucDb from the datatype registry for extension blastdbn. +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,326 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.blast:BlastProtDb from the datatype registry for extension blastdbp. +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,326 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.blast:BlastDomainDb from the datatype registry for extension blastdbd. +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,327 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.blast:LastDb from the datatype registry for extension lastdb. +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,327 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.blast:BlastNucDb5 from the datatype registry for extension blastdbn5. +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,327 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.blast:BlastProtDb5 from the datatype registry for extension blastdbp5. +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,327 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.blast:BlastDomainDb5 from the datatype registry for extension blastdbd5. +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,327 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:GenericAsn1 from the datatype registry for extension maskinfo-asn1. +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,327 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:GenericAsn1Binary from the datatype registry for extension maskinfo-asn1-binary. +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,327 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:GenericAsn1 from the datatype registry for extension pssm-asn1. +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,327 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.plant_tribes:PlantTribesKsComponents from the datatype registry for extension ptkscmp. +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,327 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.plant_tribes:Smat from the datatype registry for extension smat. +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,328 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.genetics:GenotypeMatrix from the datatype registry for extension alohomora_gts. +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,328 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.tabular:Tabular from the datatype registry for extension alohomora_map. +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,328 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.tabular:Tabular from the datatype registry for extension alohomora_maf. +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,328 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.tabular:Tabular from the datatype registry for extension alohomora_ped. +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,328 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.tabular:Tabular from the datatype registry for extension linkage_pedin. +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,328 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.genetics:DataIn from the datatype registry for extension linkage_datain. +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,328 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.genetics:MarkerMap from the datatype registry for extension linkage_map. +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,328 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.tabular:Tabular from the datatype registry for extension allegro_ihaplo. +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,328 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.tabular:Tabular from the datatype registry for extension allegro_descent. +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,328 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.genetics:AllegroLOD from the datatype registry for extension allegro_fparam. +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,328 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.genetics:IdeasPre from the datatype registry for extension ideaspre. +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,328 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.xml:Sbml from the datatype registry for extension sbml. +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,329 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.spaln:SpalnNuclDb from the datatype registry for extension spalndbnp. +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,329 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.spaln:SpalnProtDb from the datatype registry for extension spalndba. +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,329 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:RDS from the datatype registry for extension dada2_dada. +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,329 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:RDS from the datatype registry for extension dada2_errorrates. +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,330 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:RDS from the datatype registry for extension dada2_mergepairs. +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,330 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.tabular:Tabular from the datatype registry for extension dada2_sequencetable. +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,330 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.tabular:Tabular from the datatype registry for extension dada2_uniques. +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,330 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:RDS from the datatype registry for extension ampvis2. +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,330 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:Binary from the datatype registry for extension ckpt. +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,330 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:Binary from the datatype registry for extension tgz. +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,331 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.media:Wav from the datatype registry for extension wav. +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,332 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.media:Mp3 from the datatype registry for extension mp3. +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,332 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.media:Mkv from the datatype registry for extension mkv. +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,332 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.media:Mp4 from the datatype registry for extension mp4. +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,332 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.media:Flv from the datatype registry for extension flv. +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,332 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.media:Mpg from the datatype registry for extension mpg. +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,332 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.speech:TextGrid from the datatype registry for extension textgrid. +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,332 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.speech:BPF from the datatype registry for extension par. +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,332 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.tabular:Tabular from the datatype registry for extension ffindex. +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,332 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:Data from the datatype registry for extension ffdata. +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,332 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:Pretext from the datatype registry for extension pretext. +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,332 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.text:Html from the datatype registry for extension immuneml_receptors.html. +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,332 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:HexrdMaterials from the datatype registry for extension hexrd.materials.h5. +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,333 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:Npz from the datatype registry for extension npz. +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,333 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:HexrdImagesNpz from the datatype registry for extension hexrd.images.npz. +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,333 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:HexrdEtaOmeNpz from the datatype registry for extension hexrd.eta_ome.npz. +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,333 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:Npz from the datatype registry for extension hexrd.scored_orientations.npz. +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,333 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.tabular:Tabular from the datatype registry for extension hexrd.accepted_orientations. +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,333 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.text:Yaml from the datatype registry for extension hexrd.yml. +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,333 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.constructive_solid_geometry:NeperTess from the datatype registry for extension neper.tess. +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,333 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.constructive_solid_geometry:NeperTesr from the datatype registry for extension neper.tesr. +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,333 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.constructive_solid_geometry:NeperPoints from the datatype registry for extension neper.points. +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,333 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.constructive_solid_geometry:NeperPointsTabular from the datatype registry for extension neper.points.tsv. +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,333 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.constructive_solid_geometry:NeperMultiScaleCell from the datatype registry for extension neper.mscell. +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,333 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.constructive_solid_geometry:GmshMsh from the datatype registry for extension gmsh.msh. +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,333 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.constructive_solid_geometry:GmshGeo from the datatype registry for extension gmsh.geo. +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,333 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.constructive_solid_geometry:ZsetGeof from the datatype registry for extension zset.geof. +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,334 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:Binary from the datatype registry for extension stl. +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,334 [pN:main,p:76107,tN:MainThread] Overriding conflicting datatype with extension 'stl', using datatype from /scratch/rico/galaxy/lib/galaxy/config/sample/datatypes_conf.xml.sample. +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,334 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.text:Text from the datatype registry for extension pov. +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,334 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.text:PithyaResult from the datatype registry for extension pithya.result. +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,334 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.text:PithyaProperty from the datatype registry for extension pithya.property. +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,334 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.text:PithyaModel from the datatype registry for extension pithya.model. +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,334 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.text:BCSLts from the datatype registry for extension bcsl.ts. +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,334 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.text:BCSLmodel from the datatype registry for extension bcsl.model. +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,334 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.text:StormSample from the datatype registry for extension storm.sample. +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,334 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.text:StormCheck from the datatype registry for extension storm.check. +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,334 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.text:CTLresult from the datatype registry for extension ctl.result. +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,334 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.text:Castep from the datatype registry for extension castep. +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,334 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.text:Param from the datatype registry for extension param. +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,334 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.text:FormattedDensity from the datatype registry for extension den_fmt. +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,335 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.larch:AthenaProject from the datatype registry for extension prj. +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,335 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.larch:FEFFInput from the datatype registry for extension inp. +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,335 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.tabular:CSV from the datatype registry for extension sp. +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,335 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.tabular:CSV from the datatype registry for extension gds. +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,335 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.tabular:CSV from the datatype registry for extension feff. +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,335 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension feffit. +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,335 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:Binary from the datatype registry for extension bil. +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,335 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension hdr. +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,335 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.gis:Shapefile from the datatype registry for extension shp. +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,336 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:FITS from the datatype registry for extension fits. +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,336 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.chain:Chain from the datatype registry for extension chain. +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,336 [pN:main,p:76107,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.plant_tribes:PlantTribesKsComponents' +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,336 [pN:main,p:76107,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.plant_tribes:Smat' +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,336 [pN:main,p:76107,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.mothur:Sabund' +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,336 [pN:main,p:76107,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.mothur:Otu' +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,336 [pN:main,p:76107,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.mothur:GroupAbund' +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,336 [pN:main,p:76107,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.mothur:SecondaryStructureMap' +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,336 [pN:main,p:76107,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.mothur:LowerTriangleDistanceMatrix' +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,336 [pN:main,p:76107,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.mothur:SquareDistanceMatrix' +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,336 [pN:main,p:76107,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.mothur:PairwiseDistanceMatrix' +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,336 [pN:main,p:76107,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.mothur:Oligos' +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,336 [pN:main,p:76107,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.mothur:Quantile' +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,336 [pN:main,p:76107,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.mothur:Frequency' +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,336 [pN:main,p:76107,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.mothur:LaneMask' +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,337 [pN:main,p:76107,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.mothur:RefTaxonomy' +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,337 [pN:main,p:76107,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.mothur:Axes' +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,337 [pN:main,p:76107,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.constructive_solid_geometry:PlyAscii' +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,337 [pN:main,p:76107,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.constructive_solid_geometry:PlyBinary' +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,337 [pN:main,p:76107,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.constructive_solid_geometry:VtkAscii' +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,337 [pN:main,p:76107,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.constructive_solid_geometry:VtkBinary' +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,337 [pN:main,p:76107,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.constructive_solid_geometry:NeperTess' +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,337 [pN:main,p:76107,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.constructive_solid_geometry:NeperTesr' +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,337 [pN:main,p:76107,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.constructive_solid_geometry:GmshMsh' +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,337 [pN:main,p:76107,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.goldenpath:GoldenPath' +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,337 [pN:main,p:76107,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.interval:ScIdx' +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,337 [pN:main,p:76107,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.tabular:Vcf' +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,337 [pN:main,p:76107,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.binary:JP2' +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,337 [pN:main,p:76107,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.binary:TwoBit' +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,337 [pN:main,p:76107,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.binary:GeminiSQLite' +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,337 [pN:main,p:76107,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.binary:SQmass' +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,337 [pN:main,p:76107,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.binary:MzSQlite' +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,337 [pN:main,p:76107,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.binary:OSW' +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,337 [pN:main,p:76107,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.binary:PQP' +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,337 [pN:main,p:76107,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.binary:IdpDB' +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,337 [pN:main,p:76107,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.binary:ElibSQlite' +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,337 [pN:main,p:76107,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.binary:DlibSQlite' +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,337 [pN:main,p:76107,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.binary:BlibSQlite' +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,337 [pN:main,p:76107,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.binary:ChiraSQLite' +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,337 [pN:main,p:76107,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.binary:CuffDiffSQlite' +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,337 [pN:main,p:76107,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.binary:GAFASQLite' +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,337 [pN:main,p:76107,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.binary:NcbiTaxonomySQlite' +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,338 [pN:main,p:76107,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.binary:SQlite' +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,338 [pN:main,p:76107,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.binary:H5MLM' +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,338 [pN:main,p:76107,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.binary:Cool' +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,338 [pN:main,p:76107,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.binary:MCool' +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,338 [pN:main,p:76107,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.binary:Loom' +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,338 [pN:main,p:76107,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.binary:Anndata' +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,338 [pN:main,p:76107,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.binary:Biom2' +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,338 [pN:main,p:76107,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.binary:HexrdMaterials' +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,338 [pN:main,p:76107,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.binary:H5' +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,338 [pN:main,p:76107,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.binary:Grib' +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,338 [pN:main,p:76107,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.binary:HexrdImagesNpz' +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,338 [pN:main,p:76107,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.binary:HexrdEtaOmeNpz' +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,338 [pN:main,p:76107,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.binary:Npz' +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,338 [pN:main,p:76107,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.binary:Bam' +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,338 [pN:main,p:76107,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.binary:BamQuerynameSorted' +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,338 [pN:main,p:76107,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.binary:BamNative' +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,338 [pN:main,p:76107,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.binary:CRAM' +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,338 [pN:main,p:76107,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.binary:Sff' +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,338 [pN:main,p:76107,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.binary:Sra' +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,338 [pN:main,p:76107,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.binary:NetCDF' +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,338 [pN:main,p:76107,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.binary:DAA' +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,338 [pN:main,p:76107,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.binary:RMA6' +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,338 [pN:main,p:76107,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.binary:DMND' +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,338 [pN:main,p:76107,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.binary:Parquet' +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,338 [pN:main,p:76107,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.binary:BafTar' +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,338 [pN:main,p:76107,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.binary:TdfTar' +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,338 [pN:main,p:76107,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.binary:MassHunterTar' +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,339 [pN:main,p:76107,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.binary:MassLynxTar' +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,339 [pN:main,p:76107,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.binary:YepTar' +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,339 [pN:main,p:76107,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.binary:WiffTar' +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,339 [pN:main,p:76107,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.binary:Fast5ArchiveGz' +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,339 [pN:main,p:76107,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.binary:Fast5ArchiveBz2' +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,339 [pN:main,p:76107,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.binary:Fast5Archive' +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,339 [pN:main,p:76107,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.binary:Meryldb' +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,339 [pN:main,p:76107,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.binary:Bref3' +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,339 [pN:main,p:76107,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.binary:PostgresqlArchive' +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,339 [pN:main,p:76107,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.binary:ICM' +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,339 [pN:main,p:76107,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.binary:Idat' +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,339 [pN:main,p:76107,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.binary:Trr' +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,339 [pN:main,p:76107,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.binary:Dcd' +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,339 [pN:main,p:76107,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.binary:Xtc' +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,339 [pN:main,p:76107,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.binary:Cpt' +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,339 [pN:main,p:76107,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.binary:Edr' +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,339 [pN:main,p:76107,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.binary:Vel' +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,339 [pN:main,p:76107,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.binary:Xlsx' +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,339 [pN:main,p:76107,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.qiime2:QIIME2Metadata' +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,339 [pN:main,p:76107,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.qiime2:QIIME2Artifact' +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,339 [pN:main,p:76107,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.qiime2:QIIME2Visualization' +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,339 [pN:main,p:76107,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.binary:CompressedZipArchive' +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,339 [pN:main,p:76107,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.binary:Pretext' +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,339 [pN:main,p:76107,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.annotation:Augustus' +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,339 [pN:main,p:76107,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.xml:Owl' +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,340 [pN:main,p:76107,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.chain:Chain' +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,340 [pN:main,p:76107,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.triples:Rdf' +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,340 [pN:main,p:76107,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.blast:BlastXml' +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,340 [pN:main,p:76107,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.images:Gifti' +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,340 [pN:main,p:76107,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.xml:Phyloxml' +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,340 [pN:main,p:76107,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.xml:Dzi' +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,340 [pN:main,p:76107,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.xml:Sbml' +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,340 [pN:main,p:76107,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.proteomics:Dta2d' +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,340 [pN:main,p:76107,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.proteomics:Edta' +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,340 [pN:main,p:76107,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.proteomics:ConsensusXML' +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,340 [pN:main,p:76107,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.proteomics:IdXML' +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,340 [pN:main,p:76107,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.proteomics:FeatureXML' +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,340 [pN:main,p:76107,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.proteomics:MascotXML' +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,340 [pN:main,p:76107,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.proteomics:Mgf' +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,340 [pN:main,p:76107,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.proteomics:Ms2' +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,340 [pN:main,p:76107,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.proteomics:Msp' +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,340 [pN:main,p:76107,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.proteomics:MzData' +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,340 [pN:main,p:76107,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.proteomics:MzIdentML' +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,340 [pN:main,p:76107,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.proteomics:MzML' +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,340 [pN:main,p:76107,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.proteomics:MzQuantML' +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,340 [pN:main,p:76107,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.proteomics:MzTab' +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,340 [pN:main,p:76107,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.proteomics:MzTab2' +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,340 [pN:main,p:76107,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.proteomics:ParamXml' +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,340 [pN:main,p:76107,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.proteomics:MzXML' +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,341 [pN:main,p:76107,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.proteomics:NmrML' +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,341 [pN:main,p:76107,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.proteomics:Kroenik' +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,341 [pN:main,p:76107,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.proteomics:PepList' +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,341 [pN:main,p:76107,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.proteomics:PSMS' +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,341 [pN:main,p:76107,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.proteomics:PepXml' +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,341 [pN:main,p:76107,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.proteomics:ProtXML' +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,341 [pN:main,p:76107,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.proteomics:SPLib' +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,341 [pN:main,p:76107,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.proteomics:TandemXML' +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,341 [pN:main,p:76107,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.proteomics:ThermoRAW' +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,341 [pN:main,p:76107,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.proteomics:TraML' +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,341 [pN:main,p:76107,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.proteomics:TrafoXML' +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,341 [pN:main,p:76107,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.proteomics:UniProtXML' +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,341 [pN:main,p:76107,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.proteomics:XquestXML' +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,341 [pN:main,p:76107,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.proteomics:XquestSpecXML' +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,341 [pN:main,p:76107,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.proteomics:QCML' +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,341 [pN:main,p:76107,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.proteomics:Wiff' +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,341 [pN:main,p:76107,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.proteomics:PEFF' +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,341 [pN:main,p:76107,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.molecules:CML' +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,341 [pN:main,p:76107,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.xml:GenericXml' +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,341 [pN:main,p:76107,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.triples:HDT' +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,341 [pN:main,p:76107,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.triples:Turtle' +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,341 [pN:main,p:76107,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.triples:NTriples' +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,342 [pN:main,p:76107,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.triples:Jsonld' +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,342 [pN:main,p:76107,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.sequence:Maf' +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,342 [pN:main,p:76107,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.sequence:Lav' +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,342 [pN:main,p:76107,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.sequence:MemePsp' +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,342 [pN:main,p:76107,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.sequence:Fastg' +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,342 [pN:main,p:76107,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.sequence:csFasta' +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,342 [pN:main,p:76107,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.qualityscore:QualityScoreSOLiD' +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,342 [pN:main,p:76107,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.qualityscore:QualityScore454' +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,342 [pN:main,p:76107,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.molecules:SDF' +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,342 [pN:main,p:76107,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.molecules:PDB' +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,342 [pN:main,p:76107,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.molecules:Cell' +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,342 [pN:main,p:76107,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.molecules:CIF' +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,342 [pN:main,p:76107,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.molecules:ExtendedXYZ' +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,342 [pN:main,p:76107,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.molecules:XYZ' +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,342 [pN:main,p:76107,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.molecules:MOL2' +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,342 [pN:main,p:76107,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.molecules:InChI' +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,342 [pN:main,p:76107,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.molecules:FPS' +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,342 [pN:main,p:76107,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.molecules:PQR' +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,342 [pN:main,p:76107,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.molecules:GRO' +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,342 [pN:main,p:76107,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.phylip:Phylip' +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,342 [pN:main,p:76107,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.sequence:Fasta' +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,342 [pN:main,p:76107,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.sequence:FastqCSSanger' +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,343 [pN:main,p:76107,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.sequence:FastqSanger' +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,343 [pN:main,p:76107,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.sequence:Fastq' +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,343 [pN:main,p:76107,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.interval:Wiggle' +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,343 [pN:main,p:76107,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.text:Html' +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,343 [pN:main,p:76107,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.images:Pdf' +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,343 [pN:main,p:76107,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.sequence:Axt' +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,343 [pN:main,p:76107,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.sequence:Genbank' +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,343 [pN:main,p:76107,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.interval:Bed' +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,343 [pN:main,p:76107,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.interval:CustomTrack' +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,343 [pN:main,p:76107,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.interval:Gtf' +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,343 [pN:main,p:76107,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.interval:Gff' +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,343 [pN:main,p:76107,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.interval:Gff3' +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,343 [pN:main,p:76107,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.tabular:Pileup' +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,343 [pN:main,p:76107,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.tabular:Psl' +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,343 [pN:main,p:76107,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.text:Paf' +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,343 [pN:main,p:76107,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.interval:Interval' +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,343 [pN:main,p:76107,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.tabular:Sam' +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,343 [pN:main,p:76107,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.data:Newick' +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,343 [pN:main,p:76107,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.data:Nexus' +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,343 [pN:main,p:76107,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.text:IQTree' +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,344 [pN:main,p:76107,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.text:Obo' +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,344 [pN:main,p:76107,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.text:Arff' +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,344 [pN:main,p:76107,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.text:Ipynb' +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,344 [pN:main,p:76107,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.text:Biom1' +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,344 [pN:main,p:76107,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.text:ImgtJson' +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,344 [pN:main,p:76107,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.text:GeoJson' +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,344 [pN:main,p:76107,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.text:PithyaResult' +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,344 [pN:main,p:76107,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.text:BCSLts' +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,344 [pN:main,p:76107,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.text:Json' +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,344 [pN:main,p:76107,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.genetics:GenotypeMatrix' +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,344 [pN:main,p:76107,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.genetics:DataIn' +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,344 [pN:main,p:76107,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.genetics:MarkerMap' +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,344 [pN:main,p:76107,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.genetics:AllegroLOD' +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,344 [pN:main,p:76107,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.sequence:RNADotPlotMatrix' +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,344 [pN:main,p:76107,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.sequence:DotBracket' +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,344 [pN:main,p:76107,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.tabular:CMAP' +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,344 [pN:main,p:76107,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.tabular:ConnectivityTable' +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,344 [pN:main,p:76107,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.tabular:CSV' +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,344 [pN:main,p:76107,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.metacyto:mSummary' +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,344 [pN:main,p:76107,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.metacyto:mStats' +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,344 [pN:main,p:76107,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.tabular:TSV' +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,345 [pN:main,p:76107,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.tabular:MatrixMarket' +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,345 [pN:main,p:76107,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.msa:Hmmer2' +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,345 [pN:main,p:76107,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.msa:Hmmer3' +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,345 [pN:main,p:76107,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.msa:Stockholm_1_0' +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,345 [pN:main,p:76107,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.msa:MauveXmfa' +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,345 [pN:main,p:76107,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.msa:InfernalCM' +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,345 [pN:main,p:76107,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.annotation:SnapHmm' +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,345 [pN:main,p:76107,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.microarrays:Cel' +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,345 [pN:main,p:76107,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.microarrays:Gpr' +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,345 [pN:main,p:76107,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.microarrays:Gal' +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,345 [pN:main,p:76107,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.binary:RData' +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,345 [pN:main,p:76107,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.binary:RDS' +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,345 [pN:main,p:76107,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.images:Mrc2014' +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,345 [pN:main,p:76107,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.images:Jpg' +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,345 [pN:main,p:76107,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.images:Png' +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,345 [pN:main,p:76107,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.images:OMETiff' +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,345 [pN:main,p:76107,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.images:Tiff' +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,345 [pN:main,p:76107,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.images:Bmp' +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,345 [pN:main,p:76107,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.images:Gif' +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,345 [pN:main,p:76107,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.images:Im' +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,346 [pN:main,p:76107,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.images:Pcd' +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,346 [pN:main,p:76107,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.images:Pcx' +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,346 [pN:main,p:76107,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.images:Ppm' +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,346 [pN:main,p:76107,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.images:Psd' +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,346 [pN:main,p:76107,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.images:Xbm' +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,346 [pN:main,p:76107,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.images:Rgb' +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,346 [pN:main,p:76107,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.images:Pbm' +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,346 [pN:main,p:76107,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.images:Pgm' +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,346 [pN:main,p:76107,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.images:Xpm' +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,346 [pN:main,p:76107,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.images:Eps' +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,346 [pN:main,p:76107,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.images:Rast' +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,346 [pN:main,p:76107,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.images:Tck' +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,346 [pN:main,p:76107,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.images:Trk' +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,346 [pN:main,p:76107,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.images:Nifti1' +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,346 [pN:main,p:76107,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.images:Nifti2' +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,346 [pN:main,p:76107,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.images:Star' +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,346 [pN:main,p:76107,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.media:Wav' +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,346 [pN:main,p:76107,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.media:Mkv' +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,346 [pN:main,p:76107,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.media:Mp3' +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,347 [pN:main,p:76107,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.media:Mp4' +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,347 [pN:main,p:76107,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.media:Flv' +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,347 [pN:main,p:76107,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.media:Mpg' +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,347 [pN:main,p:76107,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.speech:TextGrid' +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,347 [pN:main,p:76107,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.speech:BPF' +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,347 [pN:main,p:76107,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.larch:FEFFInput' +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,347 [pN:main,p:76107,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.larch:AthenaProject' +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,347 [pN:main,p:76107,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.text:Castep' +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,347 [pN:main,p:76107,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.text:CTLresult' +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,347 [pN:main,p:76107,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.text:FormattedDensity' +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,347 [pN:main,p:76107,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.text:Param' +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,347 [pN:main,p:76107,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.text:Yaml' +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,347 [pN:main,p:76107,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.binary:OxliCountGraph' +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,347 [pN:main,p:76107,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.binary:OxliNodeGraph' +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,347 [pN:main,p:76107,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.binary:OxliTagSet' +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,347 [pN:main,p:76107,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.binary:OxliStopTags' +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,347 [pN:main,p:76107,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.binary:OxliSubset' +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,347 [pN:main,p:76107,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.binary:OxliGraphLabels' +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,348 [pN:main,p:76107,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.binary:FITS' +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,348 [pN:main,p:76107,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.neo4j:Neo4jDBzip' +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,348 [pN:main,p:76107,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.text:PithyaProperty' +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,348 [pN:main,p:76107,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.text:PithyaModel' +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,348 [pN:main,p:76107,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.text:BCSLmodel' +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,348 [pN:main,p:76107,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.text:StormSample' +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,348 [pN:main,p:76107,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.text:StormCheck' +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,351 [pN:main,p:76107,tN:MainThread] Build site file [tool-data/shared/ucsc/ucsc_build_sites.txt] not found using sample [tool-data/shared/ucsc/ucsc_build_sites.txt.sample]. +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,351 [pN:main,p:76107,tN:MainThread] Loaded build site 'ucsc': tool-data/shared/ucsc/ucsc_build_sites.txt.sample with display sites: ['main', 'test', 'archaea', 'ucla'] +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,351 [pN:main,p:76107,tN:MainThread] Loaded build site 'gbrowse': tool-data/shared/gbrowse/gbrowse_build_sites.txt with display sites: ['modencode', 'sgd_yeast', 'tair', 'wormbase', 'wormbase_ws120', 'wormbase_ws140', 'wormbase_ws170', 'wormbase_ws180', 'wormbase_ws190', 'wormbase_ws200', 'wormbase_ws204', 'wormbase_ws210', 'wormbase_ws220', 'wormbase_ws225'] +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,351 [pN:main,p:76107,tN:MainThread] Loaded build site 'ensembl': tool-data/shared/ensembl/ensembl_sites.txt +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,351 [pN:main,p:76107,tN:MainThread] Loaded build site 'ensembl_data_url': tool-data/shared/ensembl/ensembl_sites_data_URL.txt +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,351 [pN:main,p:76107,tN:MainThread] Build site file [tool-data/shared/igv/igv_build_sites.txt] not found using sample [tool-data/shared/igv/igv_build_sites.txt.sample]. +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,351 [pN:main,p:76107,tN:MainThread] Loaded build site 'igv': tool-data/shared/igv/igv_build_sites.txt.sample +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,351 [pN:main,p:76107,tN:MainThread] Build site file [tool-data/shared/rviewer/rviewer_build_sites.txt] not found using sample [tool-data/shared/rviewer/rviewer_build_sites.txt.sample]. +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,351 [pN:main,p:76107,tN:MainThread] Loaded build site 'rviewer': tool-data/shared/rviewer/rviewer_build_sites.txt.sample +galaxy.util.tool_shed.tool_shed_registry DEBUG 2024-02-23 13:24:43,352 [pN:main,p:76107,tN:MainThread] Loading references to tool sheds from /tmp/tmpu7x63f_i/tool_sheds_conf.xml +galaxy.util.tool_shed.tool_shed_registry DEBUG 2024-02-23 13:24:43,352 [pN:main,p:76107,tN:MainThread] Loaded reference to tool shed: Target Shed +galaxy.queue_worker INFO 2024-02-23 13:24:43,352 [pN:main,p:76107,tN:MainThread] Initializing main Galaxy Queue Worker on sqlalchemy+sqlite:////tmp/tmpu7x63f_i/galaxy.sqlite?isolation_level=IMMEDIATE +galaxy.tool_util.data WARNING 2024-02-23 13:24:43,359 [pN:main,p:76107,tN:MainThread] Cannot find index file '/scratch/rico/galaxytools/tools/ncbi_fcs_adaptor/test-data/ncbi_fcs_adaptor_config.tsv' for tool data table 'ncbi_fcs_adaptor_config' +galaxy.tool_util.data DEBUG 2024-02-23 13:24:43,359 [pN:main,p:76107,tN:MainThread] Loaded tool data table 'ncbi_fcs_adaptor_config' from file '/scratch/rico/galaxytools/tools/ncbi_fcs_adaptor/tool_data_table_conf.xml.test' +galaxy.tool_util.data WARNING 2024-02-23 13:24:43,359 [pN:main,p:76107,tN:MainThread] Cannot find index file '/scratch/rico/galaxytools/tools/ncbi_fcs_adaptor/test-data/ncbi_fcs_adaptor_databases.loc' for tool data table 'ncbi_fcs_adaptor_databases' +galaxy.tool_util.data DEBUG 2024-02-23 13:24:43,359 [pN:main,p:76107,tN:MainThread] Loaded tool data table 'ncbi_fcs_adaptor_databases' from file '/scratch/rico/galaxytools/tools/ncbi_fcs_adaptor/tool_data_table_conf.xml.test' +galaxy.tool_util.data WARNING 2024-02-23 13:24:43,359 [pN:main,p:76107,tN:MainThread] Cannot find index file '/scratch/rico/galaxytools/tools/ncbi_fcs_adaptor/test-data/ncbi_fcs_adaptor_divisions.tsv' for tool data table 'ncbi_fcs_adaptor_divisions' +galaxy.tool_util.data DEBUG 2024-02-23 13:24:43,359 [pN:main,p:76107,tN:MainThread] Loaded tool data table 'ncbi_fcs_adaptor_divisions' from file '/scratch/rico/galaxytools/tools/ncbi_fcs_adaptor/tool_data_table_conf.xml.test' +galaxy.visualization.genomes ERROR 2024-02-23 13:24:43,362 [pN:main,p:76107,tN:MainThread] Error reading twobit.loc +Traceback (most recent call last): + File "/scratch/rico/galaxy/lib/galaxy/visualization/genomes.py", line 220, in reload_genomes + with open(twobit_path) as f: +FileNotFoundError: [Errno 2] No such file or directory: '/scratch/rico/galaxy/tool-data/twobit.loc' +galaxy.util WARNING 2024-02-23 13:24:43,502 [pN:main,p:76107,tN:MainThread] directory not found: /scratch/rico/galaxy/lib/galaxy/util/../../../config/plugins/activities +galaxy.tools WARNING 2024-02-23 13:24:43,503 [pN:main,p:76107,tN:MainThread] The default shed tool config file (/tmp/tmpu7x63f_i/shed_tool_conf.xml) has been added to the tool_config_file option, if this is not the desired behavior, please set shed_tool_config_file to your primary shed-enabled tool config file +galaxy.tool_util.toolbox.base INFO 2024-02-23 13:24:43,503 [pN:main,p:76107,tN:MainThread] Parsing the tool configuration /tmp/tmpu7x63f_i/tool_conf.xml +galaxy.tool_util.toolbox.base DEBUG 2024-02-23 13:24:43,503 [pN:main,p:76107,tN:MainThread] Tool path for tool configuration /tmp/tmpu7x63f_i/tool_conf.xml is None +galaxy.tool_util.toolbox.base DEBUG 2024-02-23 13:24:43,509 [pN:main,p:76107,tN:MainThread] Loaded tool id: upload1, version: 1.1.7 into tool panel.. +galaxy.tool_util.toolbox.base DEBUG 2024-02-23 13:24:43,511 [pN:main,p:76107,tN:MainThread] Loaded tool id: ncbi_fcs_adaptor, version: 0.5.0+galaxy0 into tool panel.. +galaxy.tools WARNING 2024-02-23 13:24:43,511 [pN:main,p:76107,tN:MainThread] The default shed tool config file (/tmp/tmpu7x63f_i/shed_tool_conf.xml) has been added to the tool_config_file option, if this is not the desired behavior, please set shed_tool_config_file to your primary shed-enabled tool config file +galaxy.tool_util.toolbox.base INFO 2024-02-23 13:24:43,511 [pN:main,p:76107,tN:MainThread] Parsing the tool configuration /tmp/tmpu7x63f_i/shed_tools_conf.xml +galaxy.tool_util.toolbox.base DEBUG 2024-02-23 13:24:43,511 [pN:main,p:76107,tN:MainThread] Tool path for shed tool configuration /tmp/tmpu7x63f_i/shed_tools_conf.xml is /tmp/tmpu7x63f_i/shed_tools +galaxy.tools WARNING 2024-02-23 13:24:43,511 [pN:main,p:76107,tN:MainThread] The default shed tool config file (/tmp/tmpu7x63f_i/shed_tool_conf.xml) has been added to the tool_config_file option, if this is not the desired behavior, please set shed_tool_config_file to your primary shed-enabled tool config file +galaxy.tool_util.toolbox.base INFO 2024-02-23 13:24:43,511 [pN:main,p:76107,tN:MainThread] Parsing the tool configuration /tmp/tmpu7x63f_i/empty_tool_conf.xml +galaxy.tool_util.toolbox.base DEBUG 2024-02-23 13:24:43,511 [pN:main,p:76107,tN:MainThread] Tool path for tool configuration /tmp/tmpu7x63f_i/empty_tool_conf.xml is None +galaxy.tool_util.toolbox.base DEBUG 2024-02-23 13:24:43,511 [pN:main,p:76107,tN:MainThread] Reading tools from config files finished (8.676 ms) +galaxy.tool_util.toolbox.base DEBUG 2024-02-23 13:24:43,512 [pN:main,p:76107,tN:MainThread] Loaded tool id: upload1, version: 1.1.7 into tool panel.. +galaxy.tool_util.toolbox.views.edam DEBUG 2024-02-23 13:24:43,512 [pN:main,p:76107,tN:MainThread] Loading EDAM tool panel finished (0.926 ms) +galaxy.tool_util.toolbox.base DEBUG 2024-02-23 13:24:43,513 [pN:main,p:76107,tN:MainThread] Loaded tool id: upload1, version: 1.1.7 into tool panel.. +galaxy.tool_util.toolbox.views.edam DEBUG 2024-02-23 13:24:43,513 [pN:main,p:76107,tN:MainThread] Loading EDAM tool panel finished (0.804 ms) +galaxy.tool_util.toolbox.integrated_panel DEBUG 2024-02-23 13:24:43,513 [pN:main,p:76107,tN:MainThread] Writing integrated tool panel config file to '/tmp/tmpu7x63f_i/integrated_tool_panel_conf.xml' + +urllib3.connectionpool DEBUG 2024-02-23 13:24:44,240: Starting new HTTP connection (1): 127.0.0.1:39427 +[06] Galaxy not up yet... HTTPConnectionPool(host='127.0.0.1', port=39427): Max retries exceeded with url: /api/version (Cause +galaxy.util ERROR 2024-02-23 13:24:43,973 [pN:main,p:76107,tN:MainThread] Error parsing file /tmp/tmpu7x63f_i +Traceback (most recent call last): + File "/scratch/rico/galaxy/lib/galaxy/util/__init__.py", line 305, in parse_xml + tree = etree.parse(str(fname), parser=parser) + File "src/lxml/etree.pyx", line 3541, in lxml.etree.parse + File "src/lxml/parser.pxi", line 1879, in lxml.etree._parseDocument + File "src/lxml/parser.pxi", line 1905, in lxml.etree._parseDocumentFromURL + File "src/lxml/parser.pxi", line 1808, in lxml.etree._parseDocFromFile + File "src/lxml/parser.pxi", line 1180, in lxml.etree._BaseParser._parseDocFromFile + File "src/lxml/parser.pxi", line 618, in lxml.etree._ParserContext._handleParseResultDoc + File "src/lxml/parser.pxi", line 728, in lxml.etree._handleParseResult + File "src/lxml/parser.pxi", line 657, in lxml.etree._raiseParseError + File "/tmp/tmpu7x63f_i", line 1 +lxml.etree.XMLSyntaxError: Document is empty, line 1, column 1 +galaxy.tools.data_manager.manager ERROR 2024-02-23 13:24:43,974 [pN:main,p:76107,tN:MainThread] There was an error parsing your Data Manager config file "/tmp/tmpu7x63f_i": Document is empty, line 1, column 1 (tmpu7x63f_i, line 1) +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,975 [pN:main,p:76107,tN:MainThread] Loaded display application 'ucsc_bam' for datatype 'bam', inherit=False. +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,975 [pN:main,p:76107,tN:MainThread] Loaded display application 'ensembl_bam' for datatype 'bam', inherit=False. +galaxy.datatypes.display_applications.application ERROR 2024-02-23 13:24:43,976 [pN:main,p:76107,tN:MainThread] Error loading a set of Dynamic Display Application links: Unable to find data table named "igv_broad_genomes". +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,977 [pN:main,p:76107,tN:MainThread] Loaded display application 'igv_bam' for datatype 'bam', inherit=False. +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,977 [pN:main,p:76107,tN:MainThread] Loaded display application 'igb_bam' for datatype 'bam', inherit=False. +galaxy.datatypes.display_applications.application ERROR 2024-02-23 13:24:43,977 [pN:main,p:76107,tN:MainThread] Error loading a set of Dynamic Display Application links: Unable to find data table named "bam_iobio". +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,977 [pN:main,p:76107,tN:MainThread] Loaded display application 'iobio_bam' for datatype 'bam', inherit=False. +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,978 [pN:main,p:76107,tN:MainThread] Loaded display application 'igb_bed' for datatype 'bed', inherit=False. +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,978 [pN:main,p:76107,tN:MainThread] Loaded display application 'igb_bedgraph' for datatype 'bedgraph', inherit=False. +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,978 [pN:main,p:76107,tN:MainThread] Loaded display application 'ucsc_bigbed' for datatype 'bigbed', inherit=False. +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,979 [pN:main,p:76107,tN:MainThread] Loaded display application 'igb_bb' for datatype 'bigbed', inherit=False. +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,979 [pN:main,p:76107,tN:MainThread] Loaded display application 'ucsc_bigwig' for datatype 'bigwig', inherit=False. +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,979 [pN:main,p:76107,tN:MainThread] Loaded display application 'igb_bigwig' for datatype 'bigwig', inherit=False. +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,980 [pN:main,p:76107,tN:MainThread] Loaded display application 'igv_bigwig' for datatype 'bigwig', inherit=False. +galaxy.datatypes.display_applications.application ERROR 2024-02-23 13:24:43,980 [pN:main,p:76107,tN:MainThread] Error loading a set of Dynamic Display Application links: Unable to find data table named "intermine_simple_display". +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,980 [pN:main,p:76107,tN:MainThread] Loaded display application 'intermine_simple' for datatype 'intermine_tabular', inherit=False. +galaxy.datatypes.display_applications.application ERROR 2024-02-23 13:24:43,980 [pN:main,p:76107,tN:MainThread] Error loading a set of Dynamic Display Application links: Unable to find data table named "igv_broad_genomes". +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,980 [pN:main,p:76107,tN:MainThread] Loaded display application 'igv_fasta' for datatype 'fasta', inherit=True. +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,981 [pN:main,p:76107,tN:MainThread] Loaded display application 'ensembl_gff' for datatype 'gff', inherit=True. +galaxy.datatypes.display_applications.application ERROR 2024-02-23 13:24:43,982 [pN:main,p:76107,tN:MainThread] Error loading a set of Dynamic Display Application links: Unable to find data table named "igv_broad_genomes". +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,982 [pN:main,p:76107,tN:MainThread] Loaded display application 'igv_gff' for datatype 'gff', inherit=True. +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,982 [pN:main,p:76107,tN:MainThread] Loaded display application 'igb_gtf' for datatype 'gtf', inherit=False. +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,983 [pN:main,p:76107,tN:MainThread] Loaded display application 'ensembl_interval' for datatype 'interval', inherit=True. +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,984 [pN:main,p:76107,tN:MainThread] Loaded display application 'gbrowse_interval_as_bed' for datatype 'interval', inherit=True. +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,984 [pN:main,p:76107,tN:MainThread] Loaded display application 'rviewer_interval' for datatype 'interval', inherit=True. +galaxy.datatypes.display_applications.application ERROR 2024-02-23 13:24:43,984 [pN:main,p:76107,tN:MainThread] Error loading a set of Dynamic Display Application links: Unable to find data table named "igv_broad_genomes". +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,984 [pN:main,p:76107,tN:MainThread] Loaded display application 'igv_interval_as_bed' for datatype 'interval', inherit=True. +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,984 [pN:main,p:76107,tN:MainThread] Loaded display application 'avivator' for datatype 'ome.tiff', inherit=False. +galaxy.datatypes.display_applications.application ERROR 2024-02-23 13:24:43,985 [pN:main,p:76107,tN:MainThread] Error loading a set of Dynamic Display Application links: Unable to find data table named "q2view_display". +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,985 [pN:main,p:76107,tN:MainThread] Loaded display application 'q2view' for datatype 'qza', inherit=False. +galaxy.datatypes.display_applications.application ERROR 2024-02-23 13:24:43,985 [pN:main,p:76107,tN:MainThread] Error loading a set of Dynamic Display Application links: Unable to find data table named "q2view_display". +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,985 [pN:main,p:76107,tN:MainThread] Loaded display application 'q2view' for datatype 'qzv', inherit=False. +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,985 [pN:main,p:76107,tN:MainThread] Loaded display application 'ucsc_maf_customtrack' for datatype 'mafcustomtrack', inherit=False. +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,985 [pN:main,p:76107,tN:MainThread] Loaded display application 'minerva_tabular' for datatype 'tabular', inherit=False. +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,986 [pN:main,p:76107,tN:MainThread] Loaded display application 'ucsc_vcf' for datatype 'vcf', inherit=False. +galaxy.datatypes.display_applications.application ERROR 2024-02-23 13:24:43,986 [pN:main,p:76107,tN:MainThread] Error loading a set of Dynamic Display Application links: Unable to find data table named "igv_broad_genomes". +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,986 [pN:main,p:76107,tN:MainThread] Loaded display application 'igv_vcf' for datatype 'vcf', inherit=False. +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,987 [pN:main,p:76107,tN:MainThread] Loaded display application 'rviewer_vcf' for datatype 'vcf', inherit=True. +galaxy.datatypes.display_applications.application ERROR 2024-02-23 13:24:43,987 [pN:main,p:76107,tN:MainThread] Error loading a set of Dynamic Display Application links: Unable to find data table named "vcf_iobio". +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,987 [pN:main,p:76107,tN:MainThread] Loaded display application 'iobio_vcf' for datatype 'vcf', inherit=False. +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,987 [pN:main,p:76107,tN:MainThread] Loaded display application 'igb_wig' for datatype 'wig', inherit=False. +galaxy.datatypes.display_applications.application ERROR 2024-02-23 13:24:43,988 [pN:main,p:76107,tN:MainThread] Error loading a set of Dynamic Display Application links: Unable to find data table named "igv_broad_genomes". +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,988 [pN:main,p:76107,tN:MainThread] Loaded display application 'igv_vcf' for datatype 'vcf_bgzip', inherit=False. +galaxy.datatypes.display_applications.application ERROR 2024-02-23 13:24:43,988 [pN:main,p:76107,tN:MainThread] Error loading a set of Dynamic Display Application links: Unable to find data table named "igv_broad_genomes". +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,988 [pN:main,p:76107,tN:MainThread] Loaded display application 'igv_genbank' for datatype 'genbank', inherit=False. +galaxy.datatypes.display_applications.application ERROR 2024-02-23 13:24:43,988 [pN:main,p:76107,tN:MainThread] Error loading a set of Dynamic Display Application links: Unable to find data table named "biom_simple_display". +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,988 [pN:main,p:76107,tN:MainThread] Loaded display application 'biom_simple' for datatype 'biom1', inherit=False. +galaxy.datatypes.display_applications.application ERROR 2024-02-23 13:24:43,988 [pN:main,p:76107,tN:MainThread] Error loading a set of Dynamic Display Application links: Unable to find data table named "icn3d_simple_display". +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,988 [pN:main,p:76107,tN:MainThread] Loaded display application 'icn3d_simple' for datatype 'sdf', inherit=False. +galaxy.datatypes.display_applications.application ERROR 2024-02-23 13:24:43,989 [pN:main,p:76107,tN:MainThread] Error loading a set of Dynamic Display Application links: Unable to find data table named "icn3d_simple_display". +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,989 [pN:main,p:76107,tN:MainThread] Loaded display application 'icn3d_simple' for datatype 'mol2', inherit=False. +galaxy.datatypes.display_applications.application ERROR 2024-02-23 13:24:43,989 [pN:main,p:76107,tN:MainThread] Error loading a set of Dynamic Display Application links: Unable to find data table named "icn3d_simple_display". +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,989 [pN:main,p:76107,tN:MainThread] Loaded display application 'icn3d_simple' for datatype 'pdb', inherit=False. +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,989 [pN:main,p:76107,tN:MainThread] Loaded display application 'ucsc_trackhub' for datatype 'trackhub', inherit=False. +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,989 [pN:main,p:76107,tN:MainThread] Adding inherited display application 'ensembl_interval' to datatype 'bed' +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,989 [pN:main,p:76107,tN:MainThread] Adding inherited display application 'gbrowse_interval_as_bed' to datatype 'bed' +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,989 [pN:main,p:76107,tN:MainThread] Adding inherited display application 'rviewer_interval' to datatype 'bed' +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,989 [pN:main,p:76107,tN:MainThread] Adding inherited display application 'igv_interval_as_bed' to datatype 'bed' +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,989 [pN:main,p:76107,tN:MainThread] Adding inherited display application 'ensembl_interval' to datatype 'bedgraph' +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,989 [pN:main,p:76107,tN:MainThread] Adding inherited display application 'gbrowse_interval_as_bed' to datatype 'bedgraph' +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,989 [pN:main,p:76107,tN:MainThread] Adding inherited display application 'rviewer_interval' to datatype 'bedgraph' +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,989 [pN:main,p:76107,tN:MainThread] Adding inherited display application 'igv_interval_as_bed' to datatype 'bedgraph' +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,989 [pN:main,p:76107,tN:MainThread] Adding inherited display application 'ensembl_interval' to datatype 'bedstrict' +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,989 [pN:main,p:76107,tN:MainThread] Adding inherited display application 'gbrowse_interval_as_bed' to datatype 'bedstrict' +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,989 [pN:main,p:76107,tN:MainThread] Adding inherited display application 'rviewer_interval' to datatype 'bedstrict' +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,989 [pN:main,p:76107,tN:MainThread] Adding inherited display application 'igv_interval_as_bed' to datatype 'bedstrict' +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,989 [pN:main,p:76107,tN:MainThread] Adding inherited display application 'ensembl_interval' to datatype 'bed6' +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,989 [pN:main,p:76107,tN:MainThread] Adding inherited display application 'gbrowse_interval_as_bed' to datatype 'bed6' +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,989 [pN:main,p:76107,tN:MainThread] Adding inherited display application 'rviewer_interval' to datatype 'bed6' +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,989 [pN:main,p:76107,tN:MainThread] Adding inherited display application 'igv_interval_as_bed' to datatype 'bed6' +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,990 [pN:main,p:76107,tN:MainThread] Adding inherited display application 'ensembl_interval' to datatype 'bed12' +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,990 [pN:main,p:76107,tN:MainThread] Adding inherited display application 'gbrowse_interval_as_bed' to datatype 'bed12' +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,990 [pN:main,p:76107,tN:MainThread] Adding inherited display application 'rviewer_interval' to datatype 'bed12' +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,990 [pN:main,p:76107,tN:MainThread] Adding inherited display application 'igv_interval_as_bed' to datatype 'bed12' +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,990 [pN:main,p:76107,tN:MainThread] Adding inherited display application 'ensembl_interval' to datatype 'probed' +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,990 [pN:main,p:76107,tN:MainThread] Adding inherited display application 'gbrowse_interval_as_bed' to datatype 'probed' +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,990 [pN:main,p:76107,tN:MainThread] Adding inherited display application 'rviewer_interval' to datatype 'probed' +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,990 [pN:main,p:76107,tN:MainThread] Adding inherited display application 'igv_interval_as_bed' to datatype 'probed' +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,990 [pN:main,p:76107,tN:MainThread] Adding inherited display application 'ensembl_interval' to datatype 'chrint' +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,990 [pN:main,p:76107,tN:MainThread] Adding inherited display application 'gbrowse_interval_as_bed' to datatype 'chrint' +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,990 [pN:main,p:76107,tN:MainThread] Adding inherited display application 'rviewer_interval' to datatype 'chrint' +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,990 [pN:main,p:76107,tN:MainThread] Adding inherited display application 'igv_interval_as_bed' to datatype 'chrint' +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,990 [pN:main,p:76107,tN:MainThread] Adding inherited display application 'igv_fasta' to datatype 'fasta.gz' +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,990 [pN:main,p:76107,tN:MainThread] Adding inherited display application 'ensembl_gff' to datatype 'gff3' +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,990 [pN:main,p:76107,tN:MainThread] Adding inherited display application 'igv_gff' to datatype 'gff3' +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,990 [pN:main,p:76107,tN:MainThread] Adding inherited display application 'ensembl_gff' to datatype 'gff3.gz' +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,990 [pN:main,p:76107,tN:MainThread] Adding inherited display application 'igv_gff' to datatype 'gff3.gz' +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,990 [pN:main,p:76107,tN:MainThread] Adding inherited display application 'ensembl_gff' to datatype 'gff3.bz2' +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,990 [pN:main,p:76107,tN:MainThread] Adding inherited display application 'igv_gff' to datatype 'gff3.bz2' +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,990 [pN:main,p:76107,tN:MainThread] Adding inherited display application 'ensembl_gff' to datatype 'gtf' +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,990 [pN:main,p:76107,tN:MainThread] Adding inherited display application 'igv_gff' to datatype 'gtf' +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,991 [pN:main,p:76107,tN:MainThread] Adding inherited display application 'ensembl_interval' to datatype 'encodepeak' +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,991 [pN:main,p:76107,tN:MainThread] Adding inherited display application 'gbrowse_interval_as_bed' to datatype 'encodepeak' +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,991 [pN:main,p:76107,tN:MainThread] Adding inherited display application 'rviewer_interval' to datatype 'encodepeak' +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,991 [pN:main,p:76107,tN:MainThread] Adding inherited display application 'igv_interval_as_bed' to datatype 'encodepeak' +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,991 [pN:main,p:76107,tN:MainThread] Adding inherited display application 'igv_fasta' to datatype 'sequences' +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,991 [pN:main,p:76107,tN:MainThread] Adding inherited display application 'ensembl_interval' to datatype 'interval_tabix.gz' +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,991 [pN:main,p:76107,tN:MainThread] Adding inherited display application 'gbrowse_interval_as_bed' to datatype 'interval_tabix.gz' +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,991 [pN:main,p:76107,tN:MainThread] Adding inherited display application 'rviewer_interval' to datatype 'interval_tabix.gz' +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,991 [pN:main,p:76107,tN:MainThread] Adding inherited display application 'igv_interval_as_bed' to datatype 'interval_tabix.gz' +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,992 [pN:main,p:76107,tN:MainThread] Adding inherited display application 'ensembl_interval' to datatype 'juicer_medium_tabix.gz' +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,992 [pN:main,p:76107,tN:MainThread] Adding inherited display application 'gbrowse_interval_as_bed' to datatype 'juicer_medium_tabix.gz' +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,992 [pN:main,p:76107,tN:MainThread] Adding inherited display application 'rviewer_interval' to datatype 'juicer_medium_tabix.gz' +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,992 [pN:main,p:76107,tN:MainThread] Adding inherited display application 'igv_interval_as_bed' to datatype 'juicer_medium_tabix.gz' +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,992 [pN:main,p:76107,tN:MainThread] Adding inherited display application 'ensembl_interval' to datatype 'bed_tabix.gz' +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,992 [pN:main,p:76107,tN:MainThread] Adding inherited display application 'gbrowse_interval_as_bed' to datatype 'bed_tabix.gz' +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,992 [pN:main,p:76107,tN:MainThread] Adding inherited display application 'rviewer_interval' to datatype 'bed_tabix.gz' +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,992 [pN:main,p:76107,tN:MainThread] Adding inherited display application 'igv_interval_as_bed' to datatype 'bed_tabix.gz' +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,992 [pN:main,p:76107,tN:MainThread] Adding inherited display application 'ensembl_interval' to datatype 'gff_tabix.gz' +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,992 [pN:main,p:76107,tN:MainThread] Adding inherited display application 'gbrowse_interval_as_bed' to datatype 'gff_tabix.gz' +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,992 [pN:main,p:76107,tN:MainThread] Adding inherited display application 'rviewer_interval' to datatype 'gff_tabix.gz' +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,992 [pN:main,p:76107,tN:MainThread] Adding inherited display application 'igv_interval_as_bed' to datatype 'gff_tabix.gz' +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,993 [pN:main,p:76107,tN:MainThread] Adding inherited display application 'igv_fasta' to datatype 'mothur.align' +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,995 [pN:main,p:76107,tN:MainThread] Loaded converter: CONVERTER_uncompressed_to_gz +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,995 [pN:main,p:76107,tN:MainThread] Loaded converter: CONVERTER_gz_to_uncompressed +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,997 [pN:main,p:76107,tN:MainThread] Loaded converter: CONVERTER_uncompressed_to_gz +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,997 [pN:main,p:76107,tN:MainThread] Loaded converter: CONVERTER_gz_to_uncompressed +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,999 [pN:main,p:76107,tN:MainThread] Loaded converter: CONVERTER_uncompressed_to_gz +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,999 [pN:main,p:76107,tN:MainThread] Loaded converter: CONVERTER_gz_to_uncompressed +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:44,000 [pN:main,p:76107,tN:MainThread] Loaded converter: CONVERTER_Bam_Bai_0 +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:44,001 [pN:main,p:76107,tN:MainThread] Loaded converter: CONVERTER_bam_to_bigwig_0 +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:44,002 [pN:main,p:76107,tN:MainThread] Loaded converter: CONVERTER_bam_to_qname_sorted_bam +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:44,003 [pN:main,p:76107,tN:MainThread] Loaded converter: CONVERTER_bam_to_bigwig_0 +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:44,003 [pN:main,p:76107,tN:MainThread] Loaded converter: CONVERTER_bam_to_coodinate_sorted_bam +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:44,004 [pN:main,p:76107,tN:MainThread] Loaded converter: CONVERTER_bam_to_qname_sorted_bam +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:44,005 [pN:main,p:76107,tN:MainThread] Loaded converter: CONVERTER_cram_to_bam_0 +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:44,006 [pN:main,p:76107,tN:MainThread] Loaded converter: CONVERTER_bed_to_gff_0 +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:44,007 [pN:main,p:76107,tN:MainThread] Loaded converter: CONVERTER_interval_to_bgzip_0 +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:44,009 [pN:main,p:76107,tN:MainThread] Loaded converter: CONVERTER_interval_to_tabix_0 +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:44,010 [pN:main,p:76107,tN:MainThread] Loaded converter: CONVERTER_bed_gff_or_vcf_to_bigwig_0 +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:44,010 [pN:main,p:76107,tN:MainThread] Loaded converter: CONVERTER_bed_to_fli_0 +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:44,011 [pN:main,p:76107,tN:MainThread] Loaded converter: CONVERTER_bedgraph_to_bigwig +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:44,012 [pN:main,p:76107,tN:MainThread] Loaded converter: CONVERTER_len_to_linecount +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:44,012 [pN:main,p:76107,tN:MainThread] Loaded converter: CONVERTER_parquet_to_csv +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:44,014 [pN:main,p:76107,tN:MainThread] Loaded converter: bigwigtowig +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:44,016 [pN:main,p:76107,tN:MainThread] Loaded converter: CONVERTER_interval_to_bgzip_0 +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:44,017 [pN:main,p:76107,tN:MainThread] Loaded converter: CONVERTER_interval_to_tabix_0 +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:44,018 [pN:main,p:76107,tN:MainThread] Loaded converter: CONVERTER_bed_gff_or_vcf_to_bigwig_0 +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:44,019 [pN:main,p:76107,tN:MainThread] Loaded converter: csv_to_tabular +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:44,019 [pN:main,p:76107,tN:MainThread] Loaded converter: tabular_to_csv +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:44,020 [pN:main,p:76107,tN:MainThread] Loaded converter: CONVERTER_fasta_to_tabular +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:44,021 [pN:main,p:76107,tN:MainThread] Loaded converter: CONVERTER_fasta_to_bowtie_base_index +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:44,021 [pN:main,p:76107,tN:MainThread] Loaded converter: CONVERTER_fasta_to_bowtie_color_index +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:44,022 [pN:main,p:76107,tN:MainThread] Loaded converter: CONVERTER_fasta_to_2bit +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:44,023 [pN:main,p:76107,tN:MainThread] Loaded converter: CONVERTER_fasta_to_len +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:44,024 [pN:main,p:76107,tN:MainThread] Loaded converter: CONVERTER_fasta_to_fai +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:44,025 [pN:main,p:76107,tN:MainThread] Loaded converter: CONVERTER_uncompressed_to_gz +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:44,025 [pN:main,p:76107,tN:MainThread] Loaded converter: CONVERTER_gz_to_uncompressed +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:44,026 [pN:main,p:76107,tN:MainThread] Loaded converter: CONVERTER_fastq_to_fqtoc0 +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:44,027 [pN:main,p:76107,tN:MainThread] Loaded converter: CONVERTER_uncompressed_to_gz +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:44,028 [pN:main,p:76107,tN:MainThread] Loaded converter: CONVERTER_gz_to_uncompressed +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:44,029 [pN:main,p:76107,tN:MainThread] Loaded converter: CONVERTER_bz2_to_uncompressed +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:44,029 [pN:main,p:76107,tN:MainThread] Loaded converter: CONVERTER_fastq_to_fqtoc0 +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:44,030 [pN:main,p:76107,tN:MainThread] Loaded converter: CONVERTER_uncompressed_to_gz +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:44,031 [pN:main,p:76107,tN:MainThread] Loaded converter: CONVERTER_gz_to_uncompressed +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:44,032 [pN:main,p:76107,tN:MainThread] Loaded converter: CONVERTER_bz2_to_uncompressed +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:44,033 [pN:main,p:76107,tN:MainThread] Loaded converter: CONVERTER_fastq_to_fqtoc0 +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:44,034 [pN:main,p:76107,tN:MainThread] Loaded converter: CONVERTER_uncompressed_to_gz +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:44,034 [pN:main,p:76107,tN:MainThread] Loaded converter: CONVERTER_gz_to_uncompressed +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:44,035 [pN:main,p:76107,tN:MainThread] Loaded converter: CONVERTER_bz2_to_uncompressed +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:44,036 [pN:main,p:76107,tN:MainThread] Loaded converter: CONVERTER_fastq_to_fqtoc0 +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:44,037 [pN:main,p:76107,tN:MainThread] Loaded converter: CONVERTER_uncompressed_to_gz +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:44,038 [pN:main,p:76107,tN:MainThread] Loaded converter: CONVERTER_gz_to_uncompressed +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:44,039 [pN:main,p:76107,tN:MainThread] Loaded converter: CONVERTER_bz2_to_uncompressed +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:44,040 [pN:main,p:76107,tN:MainThread] Loaded converter: CONVERTER_fastq_to_fqtoc0 +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:44,041 [pN:main,p:76107,tN:MainThread] Loaded converter: CONVERTER_uncompressed_to_gz +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:44,042 [pN:main,p:76107,tN:MainThread] Loaded converter: CONVERTER_gz_to_uncompressed +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:44,042 [pN:main,p:76107,tN:MainThread] Loaded converter: CONVERTER_bz2_to_uncompressed +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:44,043 [pN:main,p:76107,tN:MainThread] Loaded converter: CONVERTER_gff_to_bed_0 +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:44,044 [pN:main,p:76107,tN:MainThread] Loaded converter: CONVERTER_gff_to_interval_index_0 +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:44,044 [pN:main,p:76107,tN:MainThread] Loaded converter: CONVERTER_bed_gff_or_vcf_to_bigwig_0 +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:44,045 [pN:main,p:76107,tN:MainThread] Loaded converter: CONVERTER_gff_to_fli_0 +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:44,047 [pN:main,p:76107,tN:MainThread] Loaded converter: CONVERTER_interval_to_bgzip_0 +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:44,048 [pN:main,p:76107,tN:MainThread] Loaded converter: CONVERTER_interval_to_tabix_0 +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:44,049 [pN:main,p:76107,tN:MainThread] Loaded converter: CONVERTER_uncompressed_to_gz +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:44,050 [pN:main,p:76107,tN:MainThread] Loaded converter: CONVERTER_gz_to_uncompressed +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:44,051 [pN:main,p:76107,tN:MainThread] Loaded converter: CONVERTER_bz2_to_uncompressed +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:44,051 [pN:main,p:76107,tN:MainThread] Loaded converter: CONVERTER_gff_to_interval_index_0 +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:44,052 [pN:main,p:76107,tN:MainThread] Loaded converter: CONVERTER_bed_gff_or_vcf_to_bigwig_0 +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:44,053 [pN:main,p:76107,tN:MainThread] Loaded converter: CONVERTER_interval_to_bed_0 +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:44,053 [pN:main,p:76107,tN:MainThread] Loaded converter: CONVERTER_interval_to_bedstrict_0 +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:44,054 [pN:main,p:76107,tN:MainThread] Loaded converter: CONVERTER_interval_to_bed6_0 +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:44,055 [pN:main,p:76107,tN:MainThread] Loaded converter: CONVERTER_interval_to_bed12_0 +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:44,056 [pN:main,p:76107,tN:MainThread] Loaded converter: CONVERTER_interval_to_bgzip_0 +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:44,058 [pN:main,p:76107,tN:MainThread] Loaded converter: CONVERTER_interval_to_tabix_0 +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:44,058 [pN:main,p:76107,tN:MainThread] Loaded converter: CONVERTER_interval_to_bigwig_0 +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:44,059 [pN:main,p:76107,tN:MainThread] Loaded converter: CONVERTER_picard_interval_list_to_bed6 +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:44,060 [pN:main,p:76107,tN:MainThread] Loaded converter: CONVERTER_tar_to_directory +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:44,061 [pN:main,p:76107,tN:MainThread] Loaded converter: CONVERTER_uncompressed_to_gz +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:44,062 [pN:main,p:76107,tN:MainThread] Loaded converter: CONVERTER_gz_to_uncompressed +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:44,063 [pN:main,p:76107,tN:MainThread] Loaded converter: CONVERTER_uncompressed_to_gz +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:44,063 [pN:main,p:76107,tN:MainThread] Loaded converter: CONVERTER_gz_to_uncompressed +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:44,064 [pN:main,p:76107,tN:MainThread] Loaded converter: CONVERTER_uncompressed_to_gz +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:44,065 [pN:main,p:76107,tN:MainThread] Loaded converter: CONVERTER_gz_to_uncompressed +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:44,066 [pN:main,p:76107,tN:MainThread] Loaded converter: CONVERTER_maf_to_fasta_0 +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:44,066 [pN:main,p:76107,tN:MainThread] Loaded converter: CONVERTER_maf_to_interval_0 +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:44,068 [pN:main,p:76107,tN:MainThread] Loaded converter: CONVERTER_interval_to_tabix_0 +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:44,069 [pN:main,p:76107,tN:MainThread] Loaded converter: CONVERTER_interval_to_bgzip_0 +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:44,070 [pN:main,p:76107,tN:MainThread] Loaded converter: CONVERTER_bed_gff_or_vcf_to_bigwig_0 +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:44,072 [pN:main,p:76107,tN:MainThread] Loaded converter: CONVERTER_interval_to_bgzip_0 +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:44,073 [pN:main,p:76107,tN:MainThread] Loaded converter: CONVERTER_interval_to_tabix_0 +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:44,074 [pN:main,p:76107,tN:MainThread] Loaded converter: CONVERTER_sam_to_unsorted_bam +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:44,075 [pN:main,p:76107,tN:MainThread] Loaded converter: CONVERTER_bam_to_coodinate_sorted_bam +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:44,075 [pN:main,p:76107,tN:MainThread] Loaded converter: CONVERTER_bam_to_qname_sorted_bam +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:44,076 [pN:main,p:76107,tN:MainThread] Loaded converter: CONVERTER_sam_to_bigwig_0 +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:44,077 [pN:main,p:76107,tN:MainThread] Loaded converter: tabular_to_dbnsfp +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:44,077 [pN:main,p:76107,tN:MainThread] Loaded converter: tabular_to_csv +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:44,078 [pN:main,p:76107,tN:MainThread] Loaded converter: CONVERTER_uncompressed_to_gz +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:44,079 [pN:main,p:76107,tN:MainThread] Loaded converter: CONVERTER_gz_to_uncompressed +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:44,081 [pN:main,p:76107,tN:MainThread] Loaded converter: CONVERTER_interval_to_bgzip_0 +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:44,081 [pN:main,p:76107,tN:MainThread] Loaded converter: CONVERTER_vcf_to_vcf_bgzip_0 +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:44,083 [pN:main,p:76107,tN:MainThread] Loaded converter: CONVERTER_interval_to_tabix_0 +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:44,083 [pN:main,p:76107,tN:MainThread] Loaded converter: CONVERTER_bed_gff_or_vcf_to_bigwig_0 +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:44,084 [pN:main,p:76107,tN:MainThread] Loaded converter: CONVERTER_uncompressed_to_gz +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:44,085 [pN:main,p:76107,tN:MainThread] Loaded converter: CONVERTER_bcf_uncompressed_to_bcf +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:44,086 [pN:main,p:76107,tN:MainThread] Loaded converter: CONVERTER_bcf_uncompressed_to_bcf +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:44,087 [pN:main,p:76107,tN:MainThread] Loaded converter: CONVERTER_wig_to_bigwig +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:44,087 [pN:main,p:76107,tN:MainThread] Loaded converter: CONVERTER_wiggle_to_interval_0 +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:44,088 [pN:main,p:76107,tN:MainThread] Loaded converter: CONVERTER_vcf_bgzip_to_tabix_0 +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:44,089 [pN:main,p:76107,tN:MainThread] Loaded converter: CONVERTER_gz_to_uncompressed +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:44,089 [pN:main,p:76107,tN:MainThread] Loaded converter: lped2fpedconvert +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:44,090 [pN:main,p:76107,tN:MainThread] Loaded converter: lped2pbedconvert +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:44,091 [pN:main,p:76107,tN:MainThread] Loaded converter: pbed2lpedconvert +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:44,091 [pN:main,p:76107,tN:MainThread] Loaded converter: pbed2ldindepconvert +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:44,092 [pN:main,p:76107,tN:MainThread] Loaded converter: CONVERTER_uncompressed_to_gz +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:44,093 [pN:main,p:76107,tN:MainThread] Loaded converter: CONVERTER_gz_to_uncompressed +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:44,094 [pN:main,p:76107,tN:MainThread] Loaded converter: CONVERTER_biom +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:44,095 [pN:main,p:76107,tN:MainThread] Loaded converter: CONVERTER_biom +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:44,098 [pN:main,p:76107,tN:MainThread] Loaded converter: CONVERTER_molecules +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:44,102 [pN:main,p:76107,tN:MainThread] Loaded converter: CONVERTER_molecules +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:44,105 [pN:main,p:76107,tN:MainThread] Loaded converter: CONVERTER_molecules +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:44,105 [pN:main,p:76107,tN:MainThread] Loaded converter: CONVERTER_SMILES_to_MOL +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:44,109 [pN:main,p:76107,tN:MainThread] Loaded converter: CONVERTER_molecules +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:44,110 [pN:main,p:76107,tN:MainThread] Loaded converter: CONVERTER_smiles_to_smiles +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:44,113 [pN:main,p:76107,tN:MainThread] Loaded converter: CONVERTER_molecules +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:44,116 [pN:main,p:76107,tN:MainThread] Loaded converter: CONVERTER_molecules +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:44,119 [pN:main,p:76107,tN:MainThread] Loaded converter: CONVERTER_molecules +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:44,122 [pN:main,p:76107,tN:MainThread] Loaded converter: CONVERTER_molecules +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:44,125 [pN:main,p:76107,tN:MainThread] Loaded converter: CONVERTER_molecules +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:44,128 [pN:main,p:76107,tN:MainThread] Loaded converter: CONVERTER_molecules +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:44,129 [pN:main,p:76107,tN:MainThread] Loaded converter: CONVERTER_inchi_to_mol +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:44,132 [pN:main,p:76107,tN:MainThread] Loaded converter: CONVERTER_molecules +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:44,136 [pN:main,p:76107,tN:MainThread] Loaded converter: CONVERTER_molecules +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:44,139 [pN:main,p:76107,tN:MainThread] Loaded converter: CONVERTER_molecules +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:44,142 [pN:main,p:76107,tN:MainThread] Loaded converter: CONVERTER_molecules +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:44,145 [pN:main,p:76107,tN:MainThread] Loaded converter: CONVERTER_molecules +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:44,148 [pN:main,p:76107,tN:MainThread] Loaded converter: CONVERTER_molecules +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:44,151 [pN:main,p:76107,tN:MainThread] Loaded converter: CONVERTER_molecules +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:44,155 [pN:main,p:76107,tN:MainThread] Loaded converter: CONVERTER_molecules +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:44,158 [pN:main,p:76107,tN:MainThread] Loaded converter: CONVERTER_molecules +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:44,161 [pN:main,p:76107,tN:MainThread] Loaded converter: CONVERTER_molecules +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:44,162 [pN:main,p:76107,tN:MainThread] Loaded converter: CONVERTER_mol2_to_mol +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:44,165 [pN:main,p:76107,tN:MainThread] Loaded converter: CONVERTER_molecules +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:44,166 [pN:main,p:76107,tN:MainThread] Loaded converter: CONVERTER_cml_to_smiles +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:44,169 [pN:main,p:76107,tN:MainThread] Loaded converter: CONVERTER_molecules +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:44,172 [pN:main,p:76107,tN:MainThread] Loaded converter: CONVERTER_molecules +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:44,175 [pN:main,p:76107,tN:MainThread] Loaded converter: CONVERTER_molecules +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:44,176 [pN:main,p:76107,tN:MainThread] Loaded converter: CONVERTER_Pdb_to_Gro_0 +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:44,177 [pN:main,p:76107,tN:MainThread] Loaded converter: CONVERTER_mdconvert +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:44,178 [pN:main,p:76107,tN:MainThread] Loaded converter: CONVERTER_mdconvert +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:44,180 [pN:main,p:76107,tN:MainThread] Loaded converter: CONVERTER_mdconvert +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:44,181 [pN:main,p:76107,tN:MainThread] Loaded converter: CONVERTER_mdconvert +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:44,182 [pN:main,p:76107,tN:MainThread] Loaded converter: CONVERTER_mdconvert +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:44,183 [pN:main,p:76107,tN:MainThread] Loaded converter: CONVERTER_mdconvert +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:44,184 [pN:main,p:76107,tN:MainThread] Loaded converter: CONVERTER_Gro_to_Pdb_0 +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:44,185 [pN:main,p:76107,tN:MainThread] Loaded converter: CONVERTER_ref_to_seq_taxomony +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:44,185 [pN:main,p:76107,tN:MainThread] Loaded converter: CONVERTER_neostorezip_to_neostore +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:44,186 [pN:main,p:76107,tN:MainThread] Loaded external metadata tool: __SET_METADATA__ +galaxy.tools.special_tools DEBUG 2024-02-23 13:24:44,187 [pN:main,p:76107,tN:MainThread] Loaded history export tool: __EXPORT_HISTORY__ +galaxy.tools.special_tools DEBUG 2024-02-23 13:24:44,188 [pN:main,p:76107,tN:MainThread] Loaded history export to uri tool: __EXPORT_HISTORY_TO_URI__ +galaxy.tools.special_tools DEBUG 2024-02-23 13:24:44,188 [pN:main,p:76107,tN:MainThread] Loaded history import tool: __IMPORT_HISTORY__ +galaxy.tools.special_tools DEBUG 2024-02-23 13:24:44,189 [pN:main,p:76107,tN:MainThread] Loaded data fetch tool: __DATA_FETCH__ +galaxy.visualization.plugins.registry INFO 2024-02-23 13:24:44,190 [pN:main,p:76107,tN:MainThread] VisualizationsRegistry, loaded plugin: PCA_3Dplot +galaxy.visualization.plugins.registry INFO 2024-02-23 13:24:44,190 [pN:main,p:76107,tN:MainThread] VisualizationsRegistry, loaded plugin: aequatus +galaxy.visualization.plugins.registry INFO 2024-02-23 13:24:44,190 [pN:main,p:76107,tN:MainThread] VisualizationsRegistry, loaded plugin: annotate_image +galaxy.visualization.plugins.config_parser INFO 2024-02-23 13:24:44,191 [pN:main,p:76107,tN:MainThread] template syntax is deprecated: use entry_point instead +galaxy.visualization.plugins.registry INFO 2024-02-23 13:24:44,191 [pN:main,p:76107,tN:MainThread] VisualizationsRegistry, loaded plugin: chiraviz +galaxy.visualization.plugins.config_parser INFO 2024-02-23 13:24:44,192 [pN:main,p:76107,tN:MainThread] Visualizations plugin disabled: Circster. Skipping... +galaxy.visualization.plugins.config_parser INFO 2024-02-23 13:24:44,192 [pN:main,p:76107,tN:MainThread] template syntax is deprecated: use entry_point instead +galaxy.visualization.plugins.registry INFO 2024-02-23 13:24:44,192 [pN:main,p:76107,tN:MainThread] VisualizationsRegistry, loaded plugin: csg +galaxy.visualization.plugins.registry INFO 2024-02-23 13:24:44,193 [pN:main,p:76107,tN:MainThread] VisualizationsRegistry, loaded plugin: cytoscape +galaxy.visualization.plugins.registry INFO 2024-02-23 13:24:44,193 [pN:main,p:76107,tN:MainThread] VisualizationsRegistry, loaded plugin: drawrna +galaxy.visualization.plugins.registry INFO 2024-02-23 13:24:44,194 [pN:main,p:76107,tN:MainThread] VisualizationsRegistry, loaded plugin: editor +galaxy.visualization.plugins.registry INFO 2024-02-23 13:24:44,195 [pN:main,p:76107,tN:MainThread] VisualizationsRegistry, loaded plugin: example +galaxy.visualization.plugins.config_parser INFO 2024-02-23 13:24:44,195 [pN:main,p:76107,tN:MainThread] template syntax is deprecated: use entry_point instead +galaxy.visualization.plugins.registry INFO 2024-02-23 13:24:44,196 [pN:main,p:76107,tN:MainThread] VisualizationsRegistry, loaded plugin: fits_image_viewer +galaxy.visualization.plugins.config_parser INFO 2024-02-23 13:24:44,196 [pN:main,p:76107,tN:MainThread] template syntax is deprecated: use entry_point instead +galaxy.visualization.plugins.registry INFO 2024-02-23 13:24:44,196 [pN:main,p:76107,tN:MainThread] VisualizationsRegistry, loaded plugin: graphviz +galaxy.visualization.plugins.registry INFO 2024-02-23 13:24:44,197 [pN:main,p:76107,tN:MainThread] VisualizationsRegistry, loaded plugin: h5web +galaxy.visualization.plugins.registry INFO 2024-02-23 13:24:44,198 [pN:main,p:76107,tN:MainThread] VisualizationsRegistry, loaded plugin: heatmap_cluster +galaxy.visualization.plugins.registry INFO 2024-02-23 13:24:44,200 [pN:main,p:76107,tN:MainThread] VisualizationsRegistry, loaded plugin: heatmap_default +galaxy.visualization.plugins.config_parser INFO 2024-02-23 13:24:44,200 [pN:main,p:76107,tN:MainThread] template syntax is deprecated: use entry_point instead +galaxy.visualization.plugins.registry INFO 2024-02-23 13:24:44,200 [pN:main,p:76107,tN:MainThread] VisualizationsRegistry, loaded plugin: hivtrace +galaxy.visualization.plugins.config_parser INFO 2024-02-23 13:24:44,200 [pN:main,p:76107,tN:MainThread] template syntax is deprecated: use entry_point instead +galaxy.visualization.plugins.registry INFO 2024-02-23 13:24:44,200 [pN:main,p:76107,tN:MainThread] VisualizationsRegistry, loaded plugin: hyphyvision +galaxy.visualization.plugins.registry INFO 2024-02-23 13:24:44,202 [pN:main,p:76107,tN:MainThread] VisualizationsRegistry, loaded plugin: jqplot_bar +galaxy.visualization.plugins.registry INFO 2024-02-23 13:24:44,203 [pN:main,p:76107,tN:MainThread] VisualizationsRegistry, loaded plugin: jqplot_box +galaxy.visualization.plugins.registry INFO 2024-02-23 13:24:44,204 [pN:main,p:76107,tN:MainThread] VisualizationsRegistry, loaded plugin: jqplot_histogram +galaxy.visualization.plugins.registry INFO 2024-02-23 13:24:44,205 [pN:main,p:76107,tN:MainThread] VisualizationsRegistry, loaded plugin: jqplot_line +galaxy.visualization.plugins.registry INFO 2024-02-23 13:24:44,207 [pN:main,p:76107,tN:MainThread] VisualizationsRegistry, loaded plugin: jqplot_scatter +galaxy.visualization.plugins.config_parser INFO 2024-02-23 13:24:44,207 [pN:main,p:76107,tN:MainThread] template syntax is deprecated: use entry_point instead +galaxy.visualization.plugins.registry INFO 2024-02-23 13:24:44,207 [pN:main,p:76107,tN:MainThread] VisualizationsRegistry, loaded plugin: audio_player +galaxy.visualization.plugins.config_parser INFO 2024-02-23 13:24:44,207 [pN:main,p:76107,tN:MainThread] template syntax is deprecated: use entry_point instead +galaxy.visualization.plugins.registry INFO 2024-02-23 13:24:44,208 [pN:main,p:76107,tN:MainThread] VisualizationsRegistry, loaded plugin: video_player +galaxy.visualization.plugins.registry INFO 2024-02-23 13:24:44,208 [pN:main,p:76107,tN:MainThread] VisualizationsRegistry, loaded plugin: msa +galaxy.visualization.plugins.config_parser INFO 2024-02-23 13:24:44,209 [pN:main,p:76107,tN:MainThread] template syntax is deprecated: use entry_point instead +galaxy.visualization.plugins.registry INFO 2024-02-23 13:24:44,209 [pN:main,p:76107,tN:MainThread] VisualizationsRegistry, loaded plugin: mvpapp +galaxy.visualization.plugins.registry INFO 2024-02-23 13:24:44,209 [pN:main,p:76107,tN:MainThread] VisualizationsRegistry, loaded plugin: ngl +galaxy.visualization.plugins.registry INFO 2024-02-23 13:24:44,210 [pN:main,p:76107,tN:MainThread] VisualizationsRegistry, loaded plugin: nora +galaxy.visualization.plugins.registry INFO 2024-02-23 13:24:44,212 [pN:main,p:76107,tN:MainThread] VisualizationsRegistry, loaded plugin: nvd3_bar +galaxy.visualization.plugins.registry INFO 2024-02-23 13:24:44,213 [pN:main,p:76107,tN:MainThread] VisualizationsRegistry, loaded plugin: nvd3_bar_stacked +galaxy.visualization.plugins.registry INFO 2024-02-23 13:24:44,214 [pN:main,p:76107,tN:MainThread] VisualizationsRegistry, loaded plugin: nvd3_histogram +galaxy.visualization.plugins.registry INFO 2024-02-23 13:24:44,215 [pN:main,p:76107,tN:MainThread] VisualizationsRegistry, loaded plugin: nvd3_histogram_discrete +galaxy.visualization.plugins.registry INFO 2024-02-23 13:24:44,217 [pN:main,p:76107,tN:MainThread] VisualizationsRegistry, loaded plugin: nvd3_horizontal +galaxy.visualization.plugins.registry INFO 2024-02-23 13:24:44,218 [pN:main,p:76107,tN:MainThread] VisualizationsRegistry, loaded plugin: nvd3_horizontal_stacked +galaxy.visualization.plugins.registry INFO 2024-02-23 13:24:44,219 [pN:main,p:76107,tN:MainThread] VisualizationsRegistry, loaded plugin: nvd3_line +galaxy.visualization.plugins.registry INFO 2024-02-23 13:24:44,221 [pN:main,p:76107,tN:MainThread] VisualizationsRegistry, loaded plugin: nvd3_line_focus +galaxy.visualization.plugins.registry INFO 2024-02-23 13:24:44,223 [pN:main,p:76107,tN:MainThread] VisualizationsRegistry, loaded plugin: nvd3_pie +galaxy.visualization.plugins.registry INFO 2024-02-23 13:24:44,226 [pN:main,p:76107,tN:MainThread] VisualizationsRegistry, loaded plugin: nvd3_scatter +galaxy.visualization.plugins.registry INFO 2024-02-23 13:24:44,231 [pN:main,p:76107,tN:MainThread] VisualizationsRegistry, loaded plugin: nvd3_stackedarea +galaxy.visualization.plugins.registry INFO 2024-02-23 13:24:44,234 [pN:main,p:76107,tN:MainThread] VisualizationsRegistry, loaded plugin: nvd3_stackedarea_full +galaxy.visualization.plugins.registry INFO 2024-02-23 13:24:44,235 [pN:main,p:76107,tN:MainThread] VisualizationsRegistry, loaded plugin: nvd3_stackedarea_stream +galaxy.visualization.plugins.registry INFO 2024-02-23 13:24:44,236 [pN:main,p:76107,tN:MainThread] VisualizationsRegistry, loaded plugin: openlayers +galaxy.visualization.plugins.registry INFO 2024-02-23 13:24:44,237 [pN:main,p:76107,tN:MainThread] VisualizationsRegistry, loaded plugin: openseadragon +galaxy.visualization.plugins.registry INFO 2024-02-23 13:24:44,237 [pN:main,p:76107,tN:MainThread] VisualizationsRegistry, loaded plugin: phylocanvas +galaxy.visualization.plugins.registry INFO 2024-02-23 13:24:44,240 [pN:main,p:76107,tN:MainThread] VisualizationsRegistry, loaded plugin: phyloviz +galaxy.visualization.plugins.registry INFO 2024-02-23 13:24:44,240 [pN:main,p:76107,tN:MainThread] VisualizationsRegistry, loaded plugin: pv +galaxy.visualization.plugins.registry INFO 2024-02-23 13:24:44,241 [pN:main,p:76107,tN:MainThread] VisualizationsRegistry, loaded plugin: scatterplot +galaxy.visualization.plugins.config_parser INFO 2024-02-23 13:24:44,241 [pN:main,p:76107,tN:MainThread] Visualizations plugin disabled: Sweepster. Skipping... +galaxy.visualization.plugins.registry INFO 2024-02-23 13:24:44,241 [pN:main,p:76107,tN:MainThread] VisualizationsRegistry, loaded plugin: trackster +galaxy.visualization.plugins.registry INFO 2024-02-23 13:24:44,242 [pN:main,p:76107,tN:MainThread] VisualizationsRegistry, loaded plugin: ts_visjs +galaxy.visualization.plugins.config_parser INFO 2024-02-23 13:24:44,242 [pN:main,p:76107,tN:MainThread] template syntax is deprecated: use entry_point instead +galaxy.visualization.plugins.registry INFO 2024-02-23 13:24:44,242 [pN:main,p:76107,tN:MainThread] VisualizationsRegistry, loaded plugin: unipept +galaxy.visualization.plugins.registry INFO 2024-02-23 13:24:44,242 [pN:main,p:76107,tN:MainThread] VisualizationsRegistry, loaded plugin: venn +galaxy.tours._impl INFO 2024-02-23 13:24:44,258 [pN:main,p:76107,tN:MainThread] Loaded tour 'core.galaxy_ui' +galaxy.tours._impl INFO 2024-02-23 13:24:44,269 [pN:main,p:76107,tN:MainThread] Loaded tour 'core.deferred' +galaxy.tours._impl INFO 2024-02-23 13:24:44,277 [pN:main,p:76107,tN:MainThread] Loaded tour 'core.history' +galaxy.tours._impl INFO 2024-02-23 13:24:44,284 [pN:main,p:76107,tN:MainThread] Loaded tour 'core.windows' +galaxy.workflow.scheduling_manager INFO 2024-02-23 13:24:44,287 [pN:main,p:76107,tN:MainThread] No workflow schedulers plugin config file defined, using default scheduler. +galaxy.web_stack.handlers INFO 2024-02-23 13:24:44,287 [pN:main,p:76107,tN:MainThread] WorkflowSchedulingManager: No job handler assignment method is set, defaulting to 'HANDLER_ASSIGNMENT_METHODS.DB_SKIP_LOCKED', set the `assign_with` attribute on <handlers> to override the default +galaxy.workflow.scheduling_manager DEBUG 2024-02-23 13:24:44,288 [pN:main,p:76107,tN:MainThread] Starting workflow schedulers +galaxy.app INFO 2024-02-23 13:24:44,289 [pN:main,p:76107,tN:MainThread] Galaxy app startup finished (2168.414 ms) +galaxy.web.framework.base DEBUG 2024-02-23 13:24:44,306 [pN:main,p:76107,tN:MainThread] Enabling 'user' controller, class: User +galaxy.web.framework.base DEBUG 2024-02-23 13:24:44,306 [pN:main,p:76107,tN:MainThread] Enabling 'data_manager' controller, class: DataManager +galaxy.web.framework.base DEBUG 2024-02-23 13:24:44,306 [pN:main,p:76107,tN:MainThread] Enabling 'async' controller, class: ASync +galaxy.web.framework.base DEBUG 2024-02-23 13:24:44,307 [pN:main,p:76107,tN:MainThread] Enabling 'tag' controller, class: TagsController +galaxy.web.framework.base DEBUG 2024-02-23 13:24:44,310 [pN:main,p:76107,tN:MainThread] Enabling 'page' controller, class: PageController +galaxy.web.framework.base DEBUG 2024-02-23 13:24:44,310 [pN:main,p:76107,tN:MainThread] Enabling 'root' controller, class: RootController +galaxy.web.framework.base DEBUG 2024-02-23 13:24:44,310 [pN:main,p:76107,tN:MainThread] Enabling 'tool_runner' controller, class: ToolRunner +galaxy.web.framework.base DEBUG 2024-02-23 13:24:44,311 [pN:main,p:76107,tN:MainThread] Enabling 'error' controller, class: Error +galaxy.web.framework.base DEBUG 2024-02-23 13:24:44,311 [pN:main,p:76107,tN:MainThread] Enabling 'forms' controller, class: Forms +galaxy.web.framework.base DEBUG 2024-02-23 13:24:44,320 [pN:main,p:76107,tN:MainThread] Enabling 'admin_toolshed' controller, class: AdminGalaxy +galaxy.web.framework.base DEBUG 2024-02-23 13:24:44,320 [pN:main,p:76107,tN:MainThread] Enabling 'admin_toolshed' controller, class: AdminToolshed +galaxy.web.framework.base DEBUG 2024-02-23 13:24:44,321 [pN:main,p:76107,tN:MainThread] Enabling 'visualization' controller, class: VisualizationController +galaxy.web.framework.base DEBUG 2024-02-23 13:24:44,321 [pN:main,p:76107,tN:MainThread] Enabling 'shed_tool_static' controller, class: ShedToolStatic +galaxy.web.framework.base DEBUG 2024-02-23 13:24:44,322 [pN:main,p:76107,tN:MainThread] Enabling 'authnz' controller, class: JSAppLauncher +galaxy.web.framework.base DEBUG 2024-02-23 13:24:44,322 [pN:main,p:76107,tN:MainThread] Enabling 'authnz' controller, class: OIDC +galaxy.web.framework.base DEBUG 2024-02-23 13:24:44,323 [pN:main,p:76107,tN:MainThread] Enabling 'workflow' controller, class: WorkflowController +galaxy.web.framework.base DEBUG 2024-02-23 13:24:44,324 [pN:main,p:76107,tN:MainThread] Enabling 'history' controller, class: HistoryController +galaxy.web.framework.base DEBUG 2024-02-23 13:24:44,342 [pN:main,p:76107,tN:MainThread] Enabling 'dataset' controller, class: DatasetInterface +galaxy.web.framework.base DEBUG 2024-02-23 13:24:44,342 [pN:main,p:76107,tN:MainThread] Enabling 'admin' controller, class: AdminGalaxy +galaxy.web.framework.base DEBUG 2024-02-23 13:24:44,776 [pN:main,p:76107,tN:MainThread] Enabling 'library_datasets' API controller, class: LibraryDatasetsController +galaxy.web.framework.base DEBUG 2024-02-23 13:24:44,872 [pN:main,p:76107,tN:MainThread] Enabling 'jobs' API controller, class: JobController +galaxy.web.framework.base DEBUG 2024-02-23 13:24:44,946 [pN:main,p:76107,tN:MainThread] Enabling 'job_files' API controller, class: JobFilesAPIController + +urllib3.connectionpool DEBUG 2024-02-23 13:24:45,245: Starting new HTTP connection (1): 127.0.0.1:39427 +[07] Galaxy not up yet... HTTPConnectionPool(host='127.0.0.1', port=39427): Max retries exceeded with url: /api/version (Cause +galaxy.web.framework.base DEBUG 2024-02-23 13:24:44,976 [pN:main,p:76107,tN:MainThread] Enabling 'toolshed' API controller, class: ToolShedController +galaxy.web.framework.base DEBUG 2024-02-23 13:24:44,986 [pN:main,p:76107,tN:MainThread] Enabling 'tools' API controller, class: ToolsController +galaxy.web.framework.base DEBUG 2024-02-23 13:24:45,062 [pN:main,p:76107,tN:MainThread] Enabling 'trs_consumer' API controller, class: TrsConsumeAPIController +galaxy.web.framework.base DEBUG 2024-02-23 13:24:45,063 [pN:main,p:76107,tN:MainThread] Enabling 'history_dataset_extended_metadata' API controller, class: HistoryDatasetExtendMetadataController +galaxy.web.framework.base DEBUG 2024-02-23 13:24:45,063 [pN:main,p:76107,tN:MainThread] Enabling 'library_dataset_extended_metadata' API controller, class: LibraryDatasetExtendMetadataController +galaxy.web.framework.base DEBUG 2024-02-23 13:24:45,063 [pN:main,p:76107,tN:MainThread] Enabling 'container_resolution' API controller, class: ContainerResolutionAPIController +galaxy.web.framework.base DEBUG 2024-02-23 13:24:45,064 [pN:main,p:76107,tN:MainThread] Enabling 'job_ports' API controller, class: JobPortsAPIController +galaxy.web.framework.base DEBUG 2024-02-23 13:24:45,064 [pN:main,p:76107,tN:MainThread] Enabling 'tool_dependencies' API controller, class: ToolDependenciesAPIController +galaxy.web.framework.base DEBUG 2024-02-23 13:24:45,152 [pN:main,p:76107,tN:MainThread] Enabling 'history_content_provenance' API controller, class: HDAProvenanceController +galaxy.web.framework.base DEBUG 2024-02-23 13:24:45,152 [pN:main,p:76107,tN:MainThread] Enabling 'ldda_provenance' API controller, class: LDDAProvenanceController +galaxy.web.framework.base DEBUG 2024-02-23 13:24:45,152 [pN:main,p:76107,tN:MainThread] Enabling 'tool_entry_points' API controller, class: ToolEntryPointsAPIController +galaxy.web.framework.base DEBUG 2024-02-23 13:24:45,236 [pN:main,p:76107,tN:MainThread] Enabling 'authenticate' API controller, class: AuthenticationController +galaxy.web.framework.base DEBUG 2024-02-23 13:24:45,497 [pN:main,p:76107,tN:MainThread] Enabling 'trs_search' API controller, class: TrsSearchAPIController +galaxy.web.framework.base DEBUG 2024-02-23 13:24:45,530 [pN:main,p:76107,tN:MainThread] Enabling 'tool_shed_repositories' API controller, class: ToolShedRepositoriesController +galaxy.web.framework.base DEBUG 2024-02-23 13:24:45,646 [pN:main,p:76107,tN:MainThread] Enabling 'forms' API controller, class: FormDefinitionAPIController +galaxy.web.framework.base DEBUG 2024-02-23 13:24:45,819 [pN:main,p:76107,tN:MainThread] Enabling 'workflows' API controller, class: WorkflowsAPIController +galaxy.web.framework.base DEBUG 2024-02-23 13:24:45,819 [pN:main,p:76107,tN:MainThread] Enabling 'uploads' API controller, class: UploadsAPIController + +urllib3.connectionpool DEBUG 2024-02-23 13:24:46,250: Starting new HTTP connection (1): 127.0.0.1:39427 +[08] Galaxy not up yet... HTTPConnectionPool(host='127.0.0.1', port=39427): Max retries exceeded with url: /api/version (Cause +galaxy.web.framework.base DEBUG 2024-02-23 13:24:46,315 [pN:main,p:76107,tN:MainThread] Enabling 'history_annotations' API controller, class: HistoryAnnotationsController +galaxy.web.framework.base DEBUG 2024-02-23 13:24:46,315 [pN:main,p:76107,tN:MainThread] Enabling 'history_content_annotations' API controller, class: HistoryContentAnnotationsController +galaxy.web.framework.base DEBUG 2024-02-23 13:24:46,315 [pN:main,p:76107,tN:MainThread] Enabling 'workflow_annotations' API controller, class: WorkflowAnnotationsController +galaxy.web.framework.base DEBUG 2024-02-23 13:24:46,360 [pN:main,p:76107,tN:MainThread] Enabling 'visualizations' API controller, class: VisualizationsController +galaxy.web.framework.base DEBUG 2024-02-23 13:24:46,361 [pN:main,p:76107,tN:MainThread] Enabling 'sanitize_allow' API controller, class: SanitizeAllowController +galaxy.web.framework.base DEBUG 2024-02-23 13:24:46,361 [pN:main,p:76107,tN:MainThread] Enabling 'page_revisions' API controller, class: PageRevisionsController +galaxy.web.framework.base DEBUG 2024-02-23 13:24:46,432 [pN:main,p:76107,tN:MainThread] Enabling 'library_contents' API controller, class: LibraryContentsController +galaxy.web.framework.base DEBUG 2024-02-23 13:24:46,551 [pN:main,p:76107,tN:MainThread] Enabling 'users' API controller, class: UserAPIController +galaxy.web.framework.base DEBUG 2024-02-23 13:24:46,552 [pN:main,p:76107,tN:MainThread] Enabling 'cloudauthz' API controller, class: CloudAuthzController +galaxy.web.framework.base DEBUG 2024-02-23 13:24:46,552 [pN:main,p:76107,tN:MainThread] Enabling 'webhooks' API controller, class: WebhooksController +galaxy.web.framework.base DEBUG 2024-02-23 13:24:46,626 [pN:main,p:76107,tN:MainThread] Enabling 'plugins' API controller, class: PluginsController +galaxy.web.framework.base DEBUG 2024-02-23 13:24:46,662 [pN:main,p:76107,tN:MainThread] Enabling 'dynamic_tools' API controller, class: DynamicToolsController +galaxy.webapps.util DEBUG 2024-02-23 13:24:46,945 [pN:main,p:76107,tN:MainThread] Enabling 'paste.httpexceptions' middleware +galaxy.webapps.util DEBUG 2024-02-23 13:24:46,946 [pN:main,p:76107,tN:MainThread] Enabling 'RemoteUser' middleware +galaxy.webapps.util DEBUG 2024-02-23 13:24:46,946 [pN:main,p:76107,tN:MainThread] Enabling 'ErrorMiddleware' middleware +galaxy.webapps.util DEBUG 2024-02-23 13:24:46,946 [pN:main,p:76107,tN:MainThread] Enabling 'TusMiddleware' middleware +galaxy.webapps.util DEBUG 2024-02-23 13:24:46,946 [pN:main,p:76107,tN:MainThread] Enabling 'XForwardedHostMiddleware' middleware +galaxy.webapps.util DEBUG 2024-02-23 13:24:46,946 [pN:main,p:76107,tN:MainThread] Enabling 'RequestIDMiddleware' middleware +galaxy.webapps.util DEBUG 2024-02-23 13:24:46,946 [pN:main,p:76107,tN:MainThread] Enabling 'build_url_map' middleware +galaxy.webapps.galaxy.buildapp DEBUG 2024-02-23 13:24:46,946 [pN:main,p:76107,tN:MainThread] Prior to webapp return, Galaxy thread <_MainThread(MainThread, started 139763045857088)> is alive. + +urllib3.connectionpool DEBUG 2024-02-23 13:24:47,254: Starting new HTTP connection (1): 127.0.0.1:39427 +[09] Galaxy not up yet... HTTPConnectionPool(host='127.0.0.1', port=39427): Max retries exceeded with url: /api/version (Cause +urllib3.connectionpool DEBUG 2024-02-23 13:24:48,259: Starting new HTTP connection (1): 127.0.0.1:39427 +[10] Galaxy not up yet... HTTPConnectionPool(host='127.0.0.1', port=39427): Max retries exceeded with url: /api/version (Cause +galaxy.web_stack DEBUG 2024-02-23 13:24:48,550 [pN:main.1,p:76310,tN:Thread-2] server_name set to: main.1 +galaxy.jobs.manager DEBUG 2024-02-23 13:24:48,552 [pN:main.1,p:76310,tN:Thread-2] Initializing job handler +galaxy.jobs INFO 2024-02-23 13:24:48,552 [pN:main.1,p:76310,tN:Thread-2] Handler 'main.1' will load all configured runner plugins +galaxy.jobs.runners.state_handler_factory DEBUG 2024-02-23 13:24:48,561 [pN:main.1,p:76310,tN:Thread-2] Loaded 'failure' state handler from module galaxy.jobs.runners.state_handlers.resubmit +galaxy.jobs DEBUG 2024-02-23 13:24:48,562 [pN:main.1,p:76310,tN:Thread-2] Loaded job runner 'galaxy.jobs.runners.local:LocalJobRunner' as 'local' +galaxy.jobs.handler DEBUG 2024-02-23 13:24:48,562 [pN:main.1,p:76310,tN:Thread-2] Loaded job runners plugins: local +galaxy.jobs.runners DEBUG 2024-02-23 13:24:48,562 [pN:main.1,p:76310,tN:Thread-2] Starting 4 LocalRunner workers +galaxy.jobs.handler DEBUG 2024-02-23 13:24:48,577 [pN:main.1,p:76310,tN:Thread-2] Handler queue starting for jobs assigned to handler: main.1 +galaxy.jobs.handler INFO 2024-02-23 13:24:48,615 [pN:main.1,p:76310,tN:JobHandlerQueue.monitor_thread] Handler job grabber initialized with 'HANDLER_ASSIGNMENT_METHODS.DB_SKIP_LOCKED' assignment method for handler 'main.1', tag(s): +galaxy.jobs.handler INFO 2024-02-23 13:24:48,617 [pN:main.1,p:76310,tN:Thread-2] job handler queue started +galaxy.jobs.handler INFO 2024-02-23 13:24:48,623 [pN:main.1,p:76310,tN:Thread-2] job handler stop queue started +galaxy.jobs.handler INFO 2024-02-23 13:24:48,626 [pN:main.1,p:76310,tN:WorkflowRequestMonitor.monitor_thread] Handler job grabber initialized with 'HANDLER_ASSIGNMENT_METHODS.DB_SKIP_LOCKED' assignment method for handler 'main.1', tag(s): _default_, None +galaxy.queue_worker INFO 2024-02-23 13:24:48,633 [pN:main.1,p:76310,tN:Thread-2] Binding and starting galaxy control worker for main.1 +galaxy.queue_worker DEBUG 2024-02-23 13:24:48,648 [pN:main.1,p:76310,tN:Thread-2] Executing toolbox reload on 'main.1' +galaxy.util WARNING 2024-02-23 13:24:48,716 [pN:main.1,p:76310,tN:Thread-2] directory not found: /scratch/rico/galaxy/lib/galaxy/util/../../../config/plugins/activities +galaxy.tools WARNING 2024-02-23 13:24:48,730 [pN:main.1,p:76310,tN:Thread-2] The default shed tool config file (/tmp/tmpu7x63f_i/shed_tool_conf.xml) has been added to the tool_config_file option, if this is not the desired behavior, please set shed_tool_config_file to your primary shed-enabled tool config file +galaxy.tool_util.toolbox.base INFO 2024-02-23 13:24:48,730 [pN:main.1,p:76310,tN:Thread-2] Parsing the tool configuration /tmp/tmpu7x63f_i/tool_conf.xml +galaxy.tool_util.toolbox.base DEBUG 2024-02-23 13:24:48,731 [pN:main.1,p:76310,tN:Thread-2] Tool path for tool configuration /tmp/tmpu7x63f_i/tool_conf.xml is None +galaxy.tools WARNING 2024-02-23 13:24:48,731 [pN:main.1,p:76310,tN:Thread-2] The default shed tool config file (/tmp/tmpu7x63f_i/shed_tool_conf.xml) has been added to the tool_config_file option, if this is not the desired behavior, please set shed_tool_config_file to your primary shed-enabled tool config file +galaxy.tool_util.toolbox.base INFO 2024-02-23 13:24:48,731 [pN:main.1,p:76310,tN:Thread-2] Parsing the tool configuration /tmp/tmpu7x63f_i/shed_tools_conf.xml +galaxy.tool_util.toolbox.base DEBUG 2024-02-23 13:24:48,732 [pN:main.1,p:76310,tN:Thread-2] Tool path for shed tool configuration /tmp/tmpu7x63f_i/shed_tools_conf.xml is /tmp/tmpu7x63f_i/shed_tools +galaxy.tools WARNING 2024-02-23 13:24:48,732 [pN:main.1,p:76310,tN:Thread-2] The default shed tool config file (/tmp/tmpu7x63f_i/shed_tool_conf.xml) has been added to the tool_config_file option, if this is not the desired behavior, please set shed_tool_config_file to your primary shed-enabled tool config file +galaxy.tool_util.toolbox.base INFO 2024-02-23 13:24:48,732 [pN:main.1,p:76310,tN:Thread-2] Parsing the tool configuration /tmp/tmpu7x63f_i/empty_tool_conf.xml +galaxy.tool_util.toolbox.base DEBUG 2024-02-23 13:24:48,732 [pN:main.1,p:76310,tN:Thread-2] Tool path for tool configuration /tmp/tmpu7x63f_i/empty_tool_conf.xml is None +galaxy.tool_util.toolbox.base DEBUG 2024-02-23 13:24:48,732 [pN:main.1,p:76310,tN:Thread-2] Reading tools from config files finished (2.373 ms) +galaxy.tool_util.toolbox.base DEBUG 2024-02-23 13:24:48,733 [pN:main.1,p:76310,tN:Thread-2] Loaded tool id: upload1, version: 1.1.7 into tool panel.. +galaxy.tool_util.toolbox.base DEBUG 2024-02-23 13:24:48,733 [pN:main.1,p:76310,tN:Thread-2] Loading tool panel finished (0.504 ms) +galaxy.tool_util.toolbox.base DEBUG 2024-02-23 13:24:48,737 [pN:main.1,p:76310,tN:Thread-2] Loaded tool id: upload1, version: 1.1.7 into tool panel.. +galaxy.tool_util.toolbox.views.edam DEBUG 2024-02-23 13:24:48,737 [pN:main.1,p:76310,tN:Thread-2] Loading EDAM tool panel finished (4.084 ms) +galaxy.tool_util.toolbox.base DEBUG 2024-02-23 13:24:48,739 [pN:main.1,p:76310,tN:Thread-2] Loaded tool id: upload1, version: 1.1.7 into tool panel.. +galaxy.tool_util.toolbox.views.edam DEBUG 2024-02-23 13:24:48,739 [pN:main.1,p:76310,tN:Thread-2] Loading EDAM tool panel finished (1.589 ms) +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:48,740 [pN:main.1,p:76310,tN:Thread-2] Loaded converter: CONVERTER_uncompressed_to_gz +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:48,740 [pN:main.1,p:76310,tN:Thread-2] Loaded converter: CONVERTER_gz_to_uncompressed +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:48,741 [pN:main.1,p:76310,tN:Thread-2] Loaded converter: CONVERTER_uncompressed_to_gz +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:48,741 [pN:main.1,p:76310,tN:Thread-2] Loaded converter: CONVERTER_gz_to_uncompressed +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:48,741 [pN:main.1,p:76310,tN:Thread-2] Loaded converter: CONVERTER_uncompressed_to_gz +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:48,742 [pN:main.1,p:76310,tN:Thread-2] Loaded converter: CONVERTER_gz_to_uncompressed +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:48,742 [pN:main.1,p:76310,tN:Thread-2] Loaded converter: CONVERTER_Bam_Bai_0 +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:48,743 [pN:main.1,p:76310,tN:Thread-2] Loaded converter: CONVERTER_bam_to_bigwig_0 +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:48,745 [pN:main.1,p:76310,tN:Thread-2] Loaded converter: CONVERTER_bam_to_qname_sorted_bam +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:48,746 [pN:main.1,p:76310,tN:Thread-2] Loaded converter: CONVERTER_bam_to_bigwig_0 +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:48,746 [pN:main.1,p:76310,tN:Thread-2] Loaded converter: CONVERTER_bam_to_coodinate_sorted_bam +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:48,746 [pN:main.1,p:76310,tN:Thread-2] Loaded converter: CONVERTER_bam_to_qname_sorted_bam +galaxy.model.database_heartbeat DEBUG 2024-02-23 13:24:48,746 [pN:main.1,p:76310,tN:database_heartbeart_main.1.thread] main.1 is config watcher +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:48,748 [pN:main.1,p:76310,tN:Thread-2] Loaded converter: CONVERTER_cram_to_bam_0 +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:48,750 [pN:main.1,p:76310,tN:Thread-2] Loaded converter: CONVERTER_bed_to_gff_0 +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:48,751 [pN:main.1,p:76310,tN:Thread-2] Loaded converter: CONVERTER_interval_to_bgzip_0 +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:48,752 [pN:main.1,p:76310,tN:Thread-2] Loaded converter: CONVERTER_interval_to_tabix_0 +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:48,752 [pN:main.1,p:76310,tN:Thread-2] Loaded converter: CONVERTER_bed_gff_or_vcf_to_bigwig_0 +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:48,753 [pN:main.1,p:76310,tN:Thread-2] Loaded converter: CONVERTER_bed_to_fli_0 +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:48,753 [pN:main.1,p:76310,tN:Thread-2] Loaded converter: CONVERTER_bedgraph_to_bigwig +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:48,753 [pN:main.1,p:76310,tN:Thread-2] Loaded converter: CONVERTER_len_to_linecount +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:48,753 [pN:main.1,p:76310,tN:Thread-2] Loaded converter: CONVERTER_parquet_to_csv +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:48,753 [pN:main.1,p:76310,tN:Thread-2] Loaded converter: bigwigtowig +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:48,753 [pN:main.1,p:76310,tN:Thread-2] Loaded converter: CONVERTER_interval_to_bgzip_0 +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:48,753 [pN:main.1,p:76310,tN:Thread-2] Loaded converter: CONVERTER_interval_to_tabix_0 +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:48,754 [pN:main.1,p:76310,tN:Thread-2] Loaded converter: CONVERTER_bed_gff_or_vcf_to_bigwig_0 +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:48,754 [pN:main.1,p:76310,tN:Thread-2] Loaded converter: csv_to_tabular +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:48,754 [pN:main.1,p:76310,tN:Thread-2] Loaded converter: tabular_to_csv +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:48,754 [pN:main.1,p:76310,tN:Thread-2] Loaded converter: CONVERTER_fasta_to_tabular +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:48,755 [pN:main.1,p:76310,tN:Thread-2] Loaded converter: CONVERTER_fasta_to_bowtie_base_index +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:48,755 [pN:main.1,p:76310,tN:Thread-2] Loaded converter: CONVERTER_fasta_to_bowtie_color_index +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:48,755 [pN:main.1,p:76310,tN:Thread-2] Loaded converter: CONVERTER_fasta_to_2bit +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:48,756 [pN:main.1,p:76310,tN:Thread-2] Loaded converter: CONVERTER_fasta_to_len +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:48,756 [pN:main.1,p:76310,tN:Thread-2] Loaded converter: CONVERTER_fasta_to_fai +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:48,757 [pN:main.1,p:76310,tN:Thread-2] Loaded converter: CONVERTER_uncompressed_to_gz +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:48,757 [pN:main.1,p:76310,tN:Thread-2] Loaded converter: CONVERTER_gz_to_uncompressed +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:48,757 [pN:main.1,p:76310,tN:Thread-2] Loaded converter: CONVERTER_fastq_to_fqtoc0 +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:48,765 [pN:main.1,p:76310,tN:Thread-2] Loaded converter: CONVERTER_uncompressed_to_gz +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:48,766 [pN:main.1,p:76310,tN:Thread-2] Loaded converter: CONVERTER_gz_to_uncompressed +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:48,766 [pN:main.1,p:76310,tN:Thread-2] Loaded converter: CONVERTER_bz2_to_uncompressed +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:48,766 [pN:main.1,p:76310,tN:Thread-2] Loaded converter: CONVERTER_fastq_to_fqtoc0 +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:48,766 [pN:main.1,p:76310,tN:Thread-2] Loaded converter: CONVERTER_uncompressed_to_gz +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:48,766 [pN:main.1,p:76310,tN:Thread-2] Loaded converter: CONVERTER_gz_to_uncompressed +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:48,766 [pN:main.1,p:76310,tN:Thread-2] Loaded converter: CONVERTER_bz2_to_uncompressed +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:48,767 [pN:main.1,p:76310,tN:Thread-2] Loaded converter: CONVERTER_fastq_to_fqtoc0 +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:48,767 [pN:main.1,p:76310,tN:Thread-2] Loaded converter: CONVERTER_uncompressed_to_gz +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:48,767 [pN:main.1,p:76310,tN:Thread-2] Loaded converter: CONVERTER_gz_to_uncompressed +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:48,767 [pN:main.1,p:76310,tN:Thread-2] Loaded converter: CONVERTER_bz2_to_uncompressed +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:48,767 [pN:main.1,p:76310,tN:Thread-2] Loaded converter: CONVERTER_fastq_to_fqtoc0 +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:48,768 [pN:main.1,p:76310,tN:Thread-2] Loaded converter: CONVERTER_uncompressed_to_gz +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:48,768 [pN:main.1,p:76310,tN:Thread-2] Loaded converter: CONVERTER_gz_to_uncompressed +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:48,768 [pN:main.1,p:76310,tN:Thread-2] Loaded converter: CONVERTER_bz2_to_uncompressed +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:48,768 [pN:main.1,p:76310,tN:Thread-2] Loaded converter: CONVERTER_fastq_to_fqtoc0 +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:48,769 [pN:main.1,p:76310,tN:Thread-2] Loaded converter: CONVERTER_uncompressed_to_gz +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:48,769 [pN:main.1,p:76310,tN:Thread-2] Loaded converter: CONVERTER_gz_to_uncompressed +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:48,769 [pN:main.1,p:76310,tN:Thread-2] Loaded converter: CONVERTER_bz2_to_uncompressed +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:48,769 [pN:main.1,p:76310,tN:Thread-2] Loaded converter: CONVERTER_gff_to_bed_0 +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:48,770 [pN:main.1,p:76310,tN:Thread-2] Loaded converter: CONVERTER_gff_to_interval_index_0 +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:48,770 [pN:main.1,p:76310,tN:Thread-2] Loaded converter: CONVERTER_bed_gff_or_vcf_to_bigwig_0 +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:48,770 [pN:main.1,p:76310,tN:Thread-2] Loaded converter: CONVERTER_gff_to_fli_0 +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:48,770 [pN:main.1,p:76310,tN:Thread-2] Loaded converter: CONVERTER_interval_to_bgzip_0 +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:48,771 [pN:main.1,p:76310,tN:Thread-2] Loaded converter: CONVERTER_interval_to_tabix_0 +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:48,771 [pN:main.1,p:76310,tN:Thread-2] Loaded converter: CONVERTER_uncompressed_to_gz +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:48,771 [pN:main.1,p:76310,tN:Thread-2] Loaded converter: CONVERTER_gz_to_uncompressed +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:48,771 [pN:main.1,p:76310,tN:Thread-2] Loaded converter: CONVERTER_bz2_to_uncompressed +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:48,771 [pN:main.1,p:76310,tN:Thread-2] Loaded converter: CONVERTER_gff_to_interval_index_0 +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:48,772 [pN:main.1,p:76310,tN:Thread-2] Loaded converter: CONVERTER_bed_gff_or_vcf_to_bigwig_0 +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:48,772 [pN:main.1,p:76310,tN:Thread-2] Loaded converter: CONVERTER_interval_to_bed_0 +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:48,772 [pN:main.1,p:76310,tN:Thread-2] Loaded converter: CONVERTER_interval_to_bedstrict_0 +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:48,773 [pN:main.1,p:76310,tN:Thread-2] Loaded converter: CONVERTER_interval_to_bed6_0 +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:48,773 [pN:main.1,p:76310,tN:Thread-2] Loaded converter: CONVERTER_interval_to_bed12_0 +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:48,773 [pN:main.1,p:76310,tN:Thread-2] Loaded converter: CONVERTER_interval_to_bgzip_0 +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:48,774 [pN:main.1,p:76310,tN:Thread-2] Loaded converter: CONVERTER_interval_to_tabix_0 +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:48,774 [pN:main.1,p:76310,tN:Thread-2] Loaded converter: CONVERTER_interval_to_bigwig_0 +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:48,774 [pN:main.1,p:76310,tN:Thread-2] Loaded converter: CONVERTER_picard_interval_list_to_bed6 +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:48,774 [pN:main.1,p:76310,tN:Thread-2] Loaded converter: CONVERTER_tar_to_directory +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:48,775 [pN:main.1,p:76310,tN:Thread-2] Loaded converter: CONVERTER_uncompressed_to_gz +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:48,775 [pN:main.1,p:76310,tN:Thread-2] Loaded converter: CONVERTER_gz_to_uncompressed +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:48,775 [pN:main.1,p:76310,tN:Thread-2] Loaded converter: CONVERTER_uncompressed_to_gz +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:48,775 [pN:main.1,p:76310,tN:Thread-2] Loaded converter: CONVERTER_gz_to_uncompressed +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:48,776 [pN:main.1,p:76310,tN:Thread-2] Loaded converter: CONVERTER_uncompressed_to_gz +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:48,776 [pN:main.1,p:76310,tN:Thread-2] Loaded converter: CONVERTER_gz_to_uncompressed +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:48,776 [pN:main.1,p:76310,tN:Thread-2] Loaded converter: CONVERTER_maf_to_fasta_0 +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:48,776 [pN:main.1,p:76310,tN:Thread-2] Loaded converter: CONVERTER_maf_to_interval_0 +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:48,776 [pN:main.1,p:76310,tN:Thread-2] Loaded converter: CONVERTER_interval_to_tabix_0 +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:48,776 [pN:main.1,p:76310,tN:Thread-2] Loaded converter: CONVERTER_interval_to_bgzip_0 +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:48,777 [pN:main.1,p:76310,tN:Thread-2] Loaded converter: CONVERTER_bed_gff_or_vcf_to_bigwig_0 +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:48,777 [pN:main.1,p:76310,tN:Thread-2] Loaded converter: CONVERTER_interval_to_bgzip_0 +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:48,777 [pN:main.1,p:76310,tN:Thread-2] Loaded converter: CONVERTER_interval_to_tabix_0 +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:48,777 [pN:main.1,p:76310,tN:Thread-2] Loaded converter: CONVERTER_sam_to_unsorted_bam +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:48,778 [pN:main.1,p:76310,tN:Thread-2] Loaded converter: CONVERTER_bam_to_coodinate_sorted_bam +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:48,778 [pN:main.1,p:76310,tN:Thread-2] Loaded converter: CONVERTER_bam_to_qname_sorted_bam +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:48,778 [pN:main.1,p:76310,tN:Thread-2] Loaded converter: CONVERTER_sam_to_bigwig_0 +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:48,778 [pN:main.1,p:76310,tN:Thread-2] Loaded converter: tabular_to_dbnsfp +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:48,778 [pN:main.1,p:76310,tN:Thread-2] Loaded converter: tabular_to_csv +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:48,779 [pN:main.1,p:76310,tN:Thread-2] Loaded converter: CONVERTER_uncompressed_to_gz +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:48,779 [pN:main.1,p:76310,tN:Thread-2] Loaded converter: CONVERTER_gz_to_uncompressed +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:48,779 [pN:main.1,p:76310,tN:Thread-2] Loaded converter: CONVERTER_interval_to_bgzip_0 +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:48,779 [pN:main.1,p:76310,tN:Thread-2] Loaded converter: CONVERTER_vcf_to_vcf_bgzip_0 +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:48,780 [pN:main.1,p:76310,tN:Thread-2] Loaded converter: CONVERTER_interval_to_tabix_0 +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:48,780 [pN:main.1,p:76310,tN:Thread-2] Loaded converter: CONVERTER_bed_gff_or_vcf_to_bigwig_0 +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:48,780 [pN:main.1,p:76310,tN:Thread-2] Loaded converter: CONVERTER_uncompressed_to_gz +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:48,781 [pN:main.1,p:76310,tN:Thread-2] Loaded converter: CONVERTER_bcf_uncompressed_to_bcf +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:48,781 [pN:main.1,p:76310,tN:Thread-2] Loaded converter: CONVERTER_bcf_uncompressed_to_bcf +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:48,781 [pN:main.1,p:76310,tN:Thread-2] Loaded converter: CONVERTER_wig_to_bigwig +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:48,781 [pN:main.1,p:76310,tN:Thread-2] Loaded converter: CONVERTER_wiggle_to_interval_0 +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:48,781 [pN:main.1,p:76310,tN:Thread-2] Loaded converter: CONVERTER_vcf_bgzip_to_tabix_0 +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:48,782 [pN:main.1,p:76310,tN:Thread-2] Loaded converter: CONVERTER_gz_to_uncompressed +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:48,782 [pN:main.1,p:76310,tN:Thread-2] Loaded converter: lped2fpedconvert +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:48,782 [pN:main.1,p:76310,tN:Thread-2] Loaded converter: lped2pbedconvert +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:48,782 [pN:main.1,p:76310,tN:Thread-2] Loaded converter: pbed2lpedconvert +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:48,782 [pN:main.1,p:76310,tN:Thread-2] Loaded converter: pbed2ldindepconvert +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:48,783 [pN:main.1,p:76310,tN:Thread-2] Loaded converter: CONVERTER_uncompressed_to_gz +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:48,783 [pN:main.1,p:76310,tN:Thread-2] Loaded converter: CONVERTER_gz_to_uncompressed +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:48,783 [pN:main.1,p:76310,tN:Thread-2] Loaded converter: CONVERTER_biom +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:48,783 [pN:main.1,p:76310,tN:Thread-2] Loaded converter: CONVERTER_biom +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:48,783 [pN:main.1,p:76310,tN:Thread-2] Loaded converter: CONVERTER_molecules +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:48,784 [pN:main.1,p:76310,tN:Thread-2] Loaded converter: CONVERTER_molecules +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:48,784 [pN:main.1,p:76310,tN:Thread-2] Loaded converter: CONVERTER_molecules +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:48,784 [pN:main.1,p:76310,tN:Thread-2] Loaded converter: CONVERTER_SMILES_to_MOL +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:48,784 [pN:main.1,p:76310,tN:Thread-2] Loaded converter: CONVERTER_molecules +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:48,784 [pN:main.1,p:76310,tN:Thread-2] Loaded converter: CONVERTER_smiles_to_smiles +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:48,785 [pN:main.1,p:76310,tN:Thread-2] Loaded converter: CONVERTER_molecules +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:48,785 [pN:main.1,p:76310,tN:Thread-2] Loaded converter: CONVERTER_molecules +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:48,785 [pN:main.1,p:76310,tN:Thread-2] Loaded converter: CONVERTER_molecules +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:48,785 [pN:main.1,p:76310,tN:Thread-2] Loaded converter: CONVERTER_molecules +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:48,785 [pN:main.1,p:76310,tN:Thread-2] Loaded converter: CONVERTER_molecules +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:48,786 [pN:main.1,p:76310,tN:Thread-2] Loaded converter: CONVERTER_molecules +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:48,786 [pN:main.1,p:76310,tN:Thread-2] Loaded converter: CONVERTER_inchi_to_mol +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:48,787 [pN:main.1,p:76310,tN:Thread-2] Loaded converter: CONVERTER_molecules +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:48,787 [pN:main.1,p:76310,tN:Thread-2] Loaded converter: CONVERTER_molecules +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:48,787 [pN:main.1,p:76310,tN:Thread-2] Loaded converter: CONVERTER_molecules +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:48,787 [pN:main.1,p:76310,tN:Thread-2] Loaded converter: CONVERTER_molecules +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:48,787 [pN:main.1,p:76310,tN:Thread-2] Loaded converter: CONVERTER_molecules +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:48,799 [pN:main.1,p:76310,tN:Thread-2] Loaded converter: CONVERTER_molecules +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:48,799 [pN:main.1,p:76310,tN:Thread-2] Loaded converter: CONVERTER_molecules +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:48,800 [pN:main.1,p:76310,tN:Thread-2] Loaded converter: CONVERTER_molecules +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:48,800 [pN:main.1,p:76310,tN:Thread-2] Loaded converter: CONVERTER_molecules +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:48,800 [pN:main.1,p:76310,tN:Thread-2] Loaded converter: CONVERTER_molecules +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:48,800 [pN:main.1,p:76310,tN:Thread-2] Loaded converter: CONVERTER_mol2_to_mol +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:48,802 [pN:main.1,p:76310,tN:Thread-2] Loaded converter: CONVERTER_molecules +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:48,802 [pN:main.1,p:76310,tN:Thread-2] Loaded converter: CONVERTER_cml_to_smiles +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:48,802 [pN:main.1,p:76310,tN:Thread-2] Loaded converter: CONVERTER_molecules +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:48,802 [pN:main.1,p:76310,tN:Thread-2] Loaded converter: CONVERTER_molecules +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:48,803 [pN:main.1,p:76310,tN:Thread-2] Loaded converter: CONVERTER_molecules +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:48,803 [pN:main.1,p:76310,tN:Thread-2] Loaded converter: CONVERTER_Pdb_to_Gro_0 +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:48,803 [pN:main.1,p:76310,tN:Thread-2] Loaded converter: CONVERTER_mdconvert +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:48,803 [pN:main.1,p:76310,tN:Thread-2] Loaded converter: CONVERTER_mdconvert +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:48,803 [pN:main.1,p:76310,tN:Thread-2] Loaded converter: CONVERTER_mdconvert +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:48,803 [pN:main.1,p:76310,tN:Thread-2] Loaded converter: CONVERTER_mdconvert +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:48,804 [pN:main.1,p:76310,tN:Thread-2] Loaded converter: CONVERTER_mdconvert +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:48,804 [pN:main.1,p:76310,tN:Thread-2] Loaded converter: CONVERTER_mdconvert +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:48,804 [pN:main.1,p:76310,tN:Thread-2] Loaded converter: CONVERTER_Gro_to_Pdb_0 +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:48,806 [pN:main.1,p:76310,tN:Thread-2] Loaded converter: CONVERTER_ref_to_seq_taxomony +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:48,806 [pN:main.1,p:76310,tN:Thread-2] Loaded converter: CONVERTER_neostorezip_to_neostore +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:48,810 [pN:main.1,p:76310,tN:Thread-2] Loaded external metadata tool: __SET_METADATA__ +galaxy.tools.special_tools DEBUG 2024-02-23 13:24:48,812 [pN:main.1,p:76310,tN:Thread-2] Loaded history export tool: __EXPORT_HISTORY__ +galaxy.tools.special_tools DEBUG 2024-02-23 13:24:48,816 [pN:main.1,p:76310,tN:Thread-2] Loaded history export to uri tool: __EXPORT_HISTORY_TO_URI__ +galaxy.tools.special_tools DEBUG 2024-02-23 13:24:48,817 [pN:main.1,p:76310,tN:Thread-2] Loaded history import tool: __IMPORT_HISTORY__ +galaxy.tools.special_tools DEBUG 2024-02-23 13:24:48,820 [pN:main.1,p:76310,tN:Thread-2] Loaded data fetch tool: __DATA_FETCH__ +galaxy.queue_worker INFO 2024-02-23 13:24:48,820 [pN:main.1,p:76310,tN:Thread-2] Queuing async task rebuild_toolbox_search_index for main.1. +galaxy.queue_worker DEBUG 2024-02-23 13:24:48,835 [pN:main.1,p:76310,tN:Thread-2] Toolbox reload (188.007 ms) +galaxy.queue_worker INFO 2024-02-23 13:24:48,836 [pN:main.1,p:76310,tN:Thread-2] Queuing async task rebuild_toolbox_search_index for main.1. +galaxy.web_stack INFO 2024-02-23 13:24:48,844 [pN:main.1,p:76310,tN:Thread-2] Galaxy server instance 'main.1' is running + +Serving on http://127.0.0.1:39427 + + +urllib3.connectionpool DEBUG 2024-02-23 13:24:49,264: Starting new HTTP connection (1): 127.0.0.1:39427 +urllib3.connectionpool DEBUG 2024-02-23 13:24:49,287: http://127.0.0.1:39427 "GET /api/version HTTP/1.1" 200 49 +Galaxy Version: 23.2 +bioblend DEBUG 2024-02-23 13:24:49,289: GET - attempts left: 10; retry delay: 10.0 +urllib3.connectionpool DEBUG 2024-02-23 13:24:49,291: Starting new HTTP connection (1): localhost:39427 +urllib3.connectionpool DEBUG 2024-02-23 13:24:49,317: http://localhost:39427 "GET /api/users HTTP/1.1" 200 2 +bioblend DEBUG 2024-02-23 13:24:49,318: GET - attempts left: 10; retry delay: 10.0 +urllib3.connectionpool DEBUG 2024-02-23 13:24:49,321: Starting new HTTP connection (1): localhost:39427 +urllib3.connectionpool DEBUG 2024-02-23 13:24:49,335: http://localhost:39427 "GET /api/configuration HTTP/1.1" 200 5121 +urllib3.connectionpool DEBUG 2024-02-23 13:24:49,337: Starting new HTTP connection (1): localhost:39427 +urllib3.connectionpool DEBUG 2024-02-23 13:24:49,450: http://localhost:39427 "POST /api/users HTTP/1.1" 200 276 +urllib3.connectionpool DEBUG 2024-02-23 13:24:49,454: Starting new HTTP connection (1): localhost:39427 +urllib3.connectionpool DEBUG 2024-02-23 13:24:49,489: http://localhost:39427 "POST /api/users/d18be19a19c462e2/api_key HTTP/1.1" 200 34 +urllib3.connectionpool DEBUG 2024-02-23 13:24:49,492: Starting new HTTP connection (1): localhost:39427 +urllib3.connectionpool DEBUG 2024-02-23 13:24:49,523: http://localhost:39427 "GET /api/tools/ncbi_fcs_adaptor/test_data?tool_version=0.5.0%2Bgalaxy0 HTTP/1.1" 200 None +urllib3.connectionpool DEBUG 2024-02-23 13:24:49,527: Starting new HTTP connection (1): localhost:39427 +urllib3.connectionpool DEBUG 2024-02-23 13:24:49,614: http://localhost:39427 "POST /api/histories HTTP/1.1" 200 1000 +urllib3.connectionpool DEBUG 2024-02-23 13:24:49,618: Starting new HTTP connection (1): localhost:39427 +urllib3.connectionpool DEBUG 2024-02-23 13:24:49,627: http://localhost:39427 "GET /api/tools/ncbi_fcs_adaptor/test_data_path?filename=fcsadaptor_prok_test.fa.gz&tool_version=0.5.0+galaxy0 HTTP/1.1" 200 None +urllib3.connectionpool DEBUG 2024-02-23 13:24:49,630: Starting new HTTP connection (1): localhost:39427 +urllib3.connectionpool DEBUG 2024-02-23 13:24:49,636: http://localhost:39427 "GET /api/version HTTP/1.1" 200 49 +urllib3.connectionpool DEBUG 2024-02-23 13:24:49,639: Starting new HTTP connection (1): localhost:39427 +urllib3.connectionpool DEBUG 2024-02-23 13:24:49,662: http://localhost:39427 "GET /api/tools/ncbi_fcs_adaptor/test_data_download?filename=fcsadaptor_prok_test.fa.gz&tool_version=0.5.0+galaxy0 HTTP/1.1" 200 None +urllib3.connectionpool DEBUG 2024-02-23 13:24:49,667: Starting new HTTP connection (1): localhost:39427 +urllib3.connectionpool DEBUG 2024-02-23 13:24:49,884: http://localhost:39427 "POST /api/tools HTTP/1.1" 200 None +urllib3.connectionpool DEBUG 2024-02-23 13:24:49,888: Starting new HTTP connection (1): localhost:39427 +multipart.multipart DEBUG 2024-02-23 13:24:49,532 [pN:main.1,p:76310,tN:MainThread] Calling on_field_start with no data +multipart.multipart DEBUG 2024-02-23 13:24:49,532 [pN:main.1,p:76310,tN:MainThread] Calling on_field_name with data[0:4] +multipart.multipart DEBUG 2024-02-23 13:24:49,532 [pN:main.1,p:76310,tN:MainThread] Calling on_field_data with data[5:63] +multipart.multipart DEBUG 2024-02-23 13:24:49,532 [pN:main.1,p:76310,tN:MainThread] Calling on_field_end with no data +multipart.multipart DEBUG 2024-02-23 13:24:49,532 [pN:main.1,p:76310,tN:MainThread] Calling on_end with no data +galaxy.tools INFO 2024-02-23 13:24:49,706 [pN:main.1,p:76310,tN:WSGI_0] Validated and populated state for tool request (11.250 ms) +galaxy.tools.actions.upload DEBUG 2024-02-23 13:24:49,712 [pN:main.1,p:76310,tN:WSGI_0] Persisted uploads (0.123 ms) +galaxy.tools.actions.upload DEBUG 2024-02-23 13:24:49,791 [pN:main.1,p:76310,tN:WSGI_0] Checked uploads (78.653 ms) +galaxy.tools.actions.upload DEBUG 2024-02-23 13:24:49,794 [pN:main.1,p:76310,tN:WSGI_0] Created upload job (3.491 ms) +galaxy.tools.execute DEBUG 2024-02-23 13:24:49,795 [pN:main.1,p:76310,tN:WSGI_0] Tool upload1 created job None (83.248 ms) +galaxy.web_stack.handlers INFO 2024-02-23 13:24:49,831 [pN:main.1,p:76310,tN:WSGI_0] (Job[id=1,tool_id=upload1]) Handler '_default_' assigned using 'HANDLER_ASSIGNMENT_METHODS.DB_SKIP_LOCKED' assignment method +galaxy.tools.execute DEBUG 2024-02-23 13:24:49,844 [pN:main.1,p:76310,tN:WSGI_0] Created 1 job(s) for tool upload1 request (137.341 ms) +galaxy.queue_worker INFO 2024-02-23 13:24:49,860 [pN:main.1,p:76310,tN:Thread-1] Instance 'main.1' received 'rebuild_toolbox_search_index' task, executing now. +galaxy.tools.search DEBUG 2024-02-23 13:24:49,860 [pN:main.1,p:76310,tN:Thread-1] Starting to build toolbox index of panel default. +galaxy.tools.search DEBUG 2024-02-23 13:24:49,888 [pN:main.1,p:76310,tN:Thread-1] Toolbox index of panel default finished (27.744 ms) +galaxy.tools.search DEBUG 2024-02-23 13:24:49,888 [pN:main.1,p:76310,tN:Thread-1] Starting to build toolbox index of panel ontology:edam_operations. +galaxy.tools.search DEBUG 2024-02-23 13:24:49,906 [pN:main.1,p:76310,tN:Thread-1] Toolbox index of panel ontology:edam_operations finished (17.556 ms) +galaxy.tools.search DEBUG 2024-02-23 13:24:49,906 [pN:main.1,p:76310,tN:Thread-1] Starting to build toolbox index of panel ontology:edam_topics. +galaxy.tools.search DEBUG 2024-02-23 13:24:49,911 [pN:main.1,p:76310,tN:Thread-1] Toolbox index of panel ontology:edam_topics finished (4.644 ms) +galaxy.queue_worker INFO 2024-02-23 13:24:49,933 [pN:main.1,p:76310,tN:Thread-1] Instance 'main.1' received 'rebuild_toolbox_search_index' task, executing now. +galaxy.tools.search DEBUG 2024-02-23 13:24:49,933 [pN:main.1,p:76310,tN:Thread-1] Starting to build toolbox index of panel default. + +urllib3.connectionpool DEBUG 2024-02-23 13:24:49,980: http://localhost:39427 "GET /api/jobs/d18be19a19c462e2 HTTP/1.1" 200 1043 +urllib3.connectionpool DEBUG 2024-02-23 13:24:50,234: Starting new HTTP connection (1): localhost:39427 +urllib3.connectionpool DEBUG 2024-02-23 13:24:50,269: http://localhost:39427 "GET /api/jobs/d18be19a19c462e2 HTTP/1.1" 200 1043 +urllib3.connectionpool DEBUG 2024-02-23 13:24:50,523: Starting new HTTP connection (1): localhost:39427 +urllib3.connectionpool DEBUG 2024-02-23 13:24:50,555: http://localhost:39427 "GET /api/jobs/d18be19a19c462e2 HTTP/1.1" 200 1043 +urllib3.connectionpool DEBUG 2024-02-23 13:24:50,809: Starting new HTTP connection (1): localhost:39427 +urllib3.connectionpool DEBUG 2024-02-23 13:24:50,882: http://localhost:39427 "GET /api/jobs/d18be19a19c462e2 HTTP/1.1" 200 1043 +galaxy.tools.search DEBUG 2024-02-23 13:24:49,983 [pN:main.1,p:76310,tN:Thread-1] Toolbox index of panel default finished (48.967 ms) +galaxy.tools.search DEBUG 2024-02-23 13:24:49,983 [pN:main.1,p:76310,tN:Thread-1] Starting to build toolbox index of panel ontology:edam_operations. +galaxy.tools.search DEBUG 2024-02-23 13:24:49,988 [pN:main.1,p:76310,tN:Thread-1] Toolbox index of panel ontology:edam_operations finished (5.496 ms) +galaxy.tools.search DEBUG 2024-02-23 13:24:49,989 [pN:main.1,p:76310,tN:Thread-1] Starting to build toolbox index of panel ontology:edam_topics. +galaxy.tools.search DEBUG 2024-02-23 13:24:49,993 [pN:main.1,p:76310,tN:Thread-1] Toolbox index of panel ontology:edam_topics finished (4.199 ms) +galaxy.jobs.mapper DEBUG 2024-02-23 13:24:50,870 [pN:main.1,p:76310,tN:JobHandlerQueue.monitor_thread] (1) Mapped job to destination id: docker_local +galaxy.jobs.handler DEBUG 2024-02-23 13:24:50,885 [pN:main.1,p:76310,tN:JobHandlerQueue.monitor_thread] (1) Dispatching to local runner +galaxy.jobs DEBUG 2024-02-23 13:24:50,899 [pN:main.1,p:76310,tN:JobHandlerQueue.monitor_thread] (1) Persisting job destination (destination id: docker_local) +galaxy.jobs DEBUG 2024-02-23 13:24:50,910 [pN:main.1,p:76310,tN:JobHandlerQueue.monitor_thread] (1) Working directory for job is: /tmp/tmpu7x63f_i/job_working_directory/000/1 +galaxy.jobs.runners DEBUG 2024-02-23 13:24:50,917 [pN:main.1,p:76310,tN:JobHandlerQueue.monitor_thread] Job [1] queued (30.885 ms) +galaxy.jobs.handler INFO 2024-02-23 13:24:50,928 [pN:main.1,p:76310,tN:JobHandlerQueue.monitor_thread] (1) Job dispatched + +urllib3.connectionpool DEBUG 2024-02-23 13:24:51,136: Starting new HTTP connection (1): localhost:39427 +urllib3.connectionpool DEBUG 2024-02-23 13:24:51,201: http://localhost:39427 "GET /api/jobs/d18be19a19c462e2 HTTP/1.1" 200 1460 +urllib3.connectionpool DEBUG 2024-02-23 13:24:51,455: Starting new HTTP connection (1): localhost:39427 +urllib3.connectionpool DEBUG 2024-02-23 13:24:51,485: http://localhost:39427 "GET /api/jobs/d18be19a19c462e2 HTTP/1.1" 200 1464 +urllib3.connectionpool DEBUG 2024-02-23 13:24:51,739: Starting new HTTP connection (1): localhost:39427 +urllib3.connectionpool DEBUG 2024-02-23 13:24:51,770: http://localhost:39427 "GET /api/jobs/d18be19a19c462e2 HTTP/1.1" 200 1464 +galaxy.jobs DEBUG 2024-02-23 13:24:51,023 [pN:main.1,p:76310,tN:LocalRunner.work_thread-0] Job wrapper for Job [1] prepared (87.577 ms) +galaxy.tool_util.deps.containers INFO 2024-02-23 13:24:51,024 [pN:main.1,p:76310,tN:LocalRunner.work_thread-0] Checking with container resolver [ExplicitContainerResolver[]] found description [None] +galaxy.tool_util.deps.containers INFO 2024-02-23 13:24:51,024 [pN:main.1,p:76310,tN:LocalRunner.work_thread-0] Checking with container resolver [CachedMulledDockerContainerResolver[namespace=biocontainers]] found description [None] +galaxy.tool_util.deps.containers INFO 2024-02-23 13:24:51,024 [pN:main.1,p:76310,tN:LocalRunner.work_thread-0] Checking with container resolver [CachedMulledDockerContainerResolver[namespace=local]] found description [None] +galaxy.tool_util.deps.containers INFO 2024-02-23 13:24:51,024 [pN:main.1,p:76310,tN:LocalRunner.work_thread-0] Checking with container resolver [MulledDockerContainerResolver[namespace=biocontainers]] found description [None] +galaxy.tool_util.deps.containers INFO 2024-02-23 13:24:51,024 [pN:main.1,p:76310,tN:LocalRunner.work_thread-0] Checking with container resolver [BuildDockerContainerResolver[namespace=local]] found description [None] +galaxy.jobs.command_factory INFO 2024-02-23 13:24:51,052 [pN:main.1,p:76310,tN:LocalRunner.work_thread-0] Built script [/tmp/tmpu7x63f_i/job_working_directory/000/1/tool_script.sh] for tool command [python '/scratch/rico/galaxy/tools/data_source/upload.py' '/scratch/rico/galaxy' '/tmp/tmpu7x63f_i/job_working_directory/000/1/registry.xml' '/tmp/tmpu7x63f_i/job_working_directory/000/1/upload_params.json' '1:/tmp/tmpu7x63f_i/job_working_directory/000/1/outputs/dataset_eec98b5f-f9be-4dc5-96b4-503ed9063d81_files:/tmp/tmpu7x63f_i/job_working_directory/000/1/outputs/dataset_eec98b5f-f9be-4dc5-96b4-503ed9063d81.dat'] +galaxy.jobs.runners DEBUG 2024-02-23 13:24:51,107 [pN:main.1,p:76310,tN:LocalRunner.work_thread-0] (1) command is: mkdir -p working outputs configs +if [ -d _working ]; then + rm -rf working/ outputs/ configs/; cp -R _working working; cp -R _outputs outputs; cp -R _configs configs +else + cp -R working _working; cp -R outputs _outputs; cp -R configs _configs +fi +cd working; /bin/bash /tmp/tmpu7x63f_i/job_working_directory/000/1/tool_script.sh > '../outputs/tool_stdout' 2> '../outputs/tool_stderr'; return_code=$?; echo $return_code > /tmp/tmpu7x63f_i/job_working_directory/000/1/galaxy_1.ec; cd '/tmp/tmpu7x63f_i/job_working_directory/000/1'; +[ "$GALAXY_VIRTUAL_ENV" = "None" ] && GALAXY_VIRTUAL_ENV="$_GALAXY_VIRTUAL_ENV"; _galaxy_setup_environment True; python metadata/set.py; sh -c "exit $return_code" +galaxy.jobs.runners.local DEBUG 2024-02-23 13:24:51,129 [pN:main.1,p:76310,tN:LocalRunner.work_thread-0] (1) executing job script: /tmp/tmpu7x63f_i/job_working_directory/000/1/galaxy_1.sh + +urllib3.connectionpool DEBUG 2024-02-23 13:24:52,024: Starting new HTTP connection (1): localhost:39427 +urllib3.connectionpool DEBUG 2024-02-23 13:24:52,053: http://localhost:39427 "GET /api/jobs/d18be19a19c462e2 HTTP/1.1" 200 1464 +urllib3.connectionpool DEBUG 2024-02-23 13:24:52,307: Starting new HTTP connection (1): localhost:39427 +urllib3.connectionpool DEBUG 2024-02-23 13:24:52,335: http://localhost:39427 "GET /api/jobs/d18be19a19c462e2 HTTP/1.1" 200 1464 +urllib3.connectionpool DEBUG 2024-02-23 13:24:52,589: Starting new HTTP connection (1): localhost:39427 +urllib3.connectionpool DEBUG 2024-02-23 13:24:52,612: http://localhost:39427 "GET /api/jobs/d18be19a19c462e2 HTTP/1.1" 200 1464 +urllib3.connectionpool DEBUG 2024-02-23 13:24:52,866: Starting new HTTP connection (1): localhost:39427 +urllib3.connectionpool DEBUG 2024-02-23 13:24:52,897: http://localhost:39427 "GET /api/jobs/d18be19a19c462e2 HTTP/1.1" 200 1464 +urllib3.connectionpool DEBUG 2024-02-23 13:24:53,151: Starting new HTTP connection (1): localhost:39427 +urllib3.connectionpool DEBUG 2024-02-23 13:24:53,179: http://localhost:39427 "GET /api/jobs/d18be19a19c462e2 HTTP/1.1" 200 1464 +urllib3.connectionpool DEBUG 2024-02-23 13:24:53,433: Starting new HTTP connection (1): localhost:39427 +urllib3.connectionpool DEBUG 2024-02-23 13:24:53,459: http://localhost:39427 "GET /api/jobs/d18be19a19c462e2 HTTP/1.1" 200 1464 +urllib3.connectionpool DEBUG 2024-02-23 13:24:53,714: Starting new HTTP connection (1): localhost:39427 +urllib3.connectionpool DEBUG 2024-02-23 13:24:53,745: http://localhost:39427 "GET /api/jobs/d18be19a19c462e2 HTTP/1.1" 200 1464 +urllib3.connectionpool DEBUG 2024-02-23 13:24:53,999: Starting new HTTP connection (1): localhost:39427 +urllib3.connectionpool DEBUG 2024-02-23 13:24:54,022: http://localhost:39427 "GET /api/jobs/d18be19a19c462e2 HTTP/1.1" 200 1464 +urllib3.connectionpool DEBUG 2024-02-23 13:24:54,276: Starting new HTTP connection (1): localhost:39427 +urllib3.connectionpool DEBUG 2024-02-23 13:24:54,307: http://localhost:39427 "GET /api/jobs/d18be19a19c462e2 HTTP/1.1" 200 1464 +urllib3.connectionpool DEBUG 2024-02-23 13:24:54,560: Starting new HTTP connection (1): localhost:39427 +urllib3.connectionpool DEBUG 2024-02-23 13:24:54,593: http://localhost:39427 "GET /api/jobs/d18be19a19c462e2 HTTP/1.1" 200 1464 +urllib3.connectionpool DEBUG 2024-02-23 13:24:54,847: Starting new HTTP connection (1): localhost:39427 +urllib3.connectionpool DEBUG 2024-02-23 13:24:54,878: http://localhost:39427 "GET /api/jobs/d18be19a19c462e2 HTTP/1.1" 200 1464 +urllib3.connectionpool DEBUG 2024-02-23 13:24:55,132: Starting new HTTP connection (1): localhost:39427 +urllib3.connectionpool DEBUG 2024-02-23 13:24:55,165: http://localhost:39427 "GET /api/jobs/d18be19a19c462e2 HTTP/1.1" 200 1464 +urllib3.connectionpool DEBUG 2024-02-23 13:24:55,419: Starting new HTTP connection (1): localhost:39427 +urllib3.connectionpool DEBUG 2024-02-23 13:24:55,444: http://localhost:39427 "GET /api/jobs/d18be19a19c462e2 HTTP/1.1" 200 1464 +urllib3.connectionpool DEBUG 2024-02-23 13:24:55,698: Starting new HTTP connection (1): localhost:39427 +urllib3.connectionpool DEBUG 2024-02-23 13:24:55,723: http://localhost:39427 "GET /api/jobs/d18be19a19c462e2 HTTP/1.1" 200 1464 +urllib3.connectionpool DEBUG 2024-02-23 13:24:55,977: Starting new HTTP connection (1): localhost:39427 +urllib3.connectionpool DEBUG 2024-02-23 13:24:56,004: http://localhost:39427 "GET /api/jobs/d18be19a19c462e2 HTTP/1.1" 200 1464 +urllib3.connectionpool DEBUG 2024-02-23 13:24:56,257: Starting new HTTP connection (1): localhost:39427 +urllib3.connectionpool DEBUG 2024-02-23 13:24:56,284: http://localhost:39427 "GET /api/jobs/d18be19a19c462e2 HTTP/1.1" 200 1464 +urllib3.connectionpool DEBUG 2024-02-23 13:24:56,537: Starting new HTTP connection (1): localhost:39427 +urllib3.connectionpool DEBUG 2024-02-23 13:24:56,563: http://localhost:39427 "GET /api/jobs/d18be19a19c462e2 HTTP/1.1" 200 1464 +urllib3.connectionpool DEBUG 2024-02-23 13:24:56,817: Starting new HTTP connection (1): localhost:39427 +urllib3.connectionpool DEBUG 2024-02-23 13:24:56,888: http://localhost:39427 "GET /api/jobs/d18be19a19c462e2 HTTP/1.1" 200 1464 +galaxy.jobs.runners.util.process_groups DEBUG 2024-02-23 13:24:56,804 [pN:main.1,p:76310,tN:LocalRunner.work_thread-0] check_pg(): No process found in process group 76332 +galaxy.jobs.runners.local DEBUG 2024-02-23 13:24:56,805 [pN:main.1,p:76310,tN:LocalRunner.work_thread-0] execution finished: /tmp/tmpu7x63f_i/job_working_directory/000/1/galaxy_1.sh +galaxy.jobs DEBUG 2024-02-23 13:24:56,843 [pN:main.1,p:76310,tN:LocalRunner.work_thread-0] finish(): Moved /tmp/tmpu7x63f_i/job_working_directory/000/1/outputs/dataset_eec98b5f-f9be-4dc5-96b4-503ed9063d81.dat to /tmp/tmpu7x63f_i/files/e/e/c/dataset_eec98b5f-f9be-4dc5-96b4-503ed9063d81.dat +galaxy.model.metadata DEBUG 2024-02-23 13:24:56,857 [pN:main.1,p:76310,tN:LocalRunner.work_thread-0] loading metadata from file for: HistoryDatasetAssociation 1 +galaxy.jobs DEBUG 2024-02-23 13:24:56,909 [pN:main.1,p:76310,tN:LocalRunner.work_thread-0] job_wrapper.finish for job 1 executed (79.553 ms) + +urllib3.connectionpool DEBUG 2024-02-23 13:24:57,142: Starting new HTTP connection (1): localhost:39427 +urllib3.connectionpool DEBUG 2024-02-23 13:24:57,174: http://localhost:39427 "GET /api/jobs/d18be19a19c462e2 HTTP/1.1" 200 1454 +urllib3.connectionpool DEBUG 2024-02-23 13:24:57,176: Starting new HTTP connection (1): localhost:39427 +urllib3.connectionpool DEBUG 2024-02-23 13:24:57,302: http://localhost:39427 "POST /api/tools HTTP/1.1" 200 None +urllib3.connectionpool DEBUG 2024-02-23 13:24:57,307: Starting new HTTP connection (1): localhost:39427 +urllib3.connectionpool DEBUG 2024-02-23 13:24:57,339: http://localhost:39427 "GET /api/jobs/f7b3fc53f9a1cdab HTTP/1.1" 200 873 +urllib3.connectionpool DEBUG 2024-02-23 13:24:57,593: Starting new HTTP connection (1): localhost:39427 +urllib3.connectionpool DEBUG 2024-02-23 13:24:57,625: http://localhost:39427 "GET /api/jobs/f7b3fc53f9a1cdab HTTP/1.1" 200 873 +urllib3.connectionpool DEBUG 2024-02-23 13:24:57,878: Starting new HTTP connection (1): localhost:39427 +urllib3.connectionpool DEBUG 2024-02-23 13:24:57,909: http://localhost:39427 "GET /api/jobs/f7b3fc53f9a1cdab HTTP/1.1" 200 873 +galaxy.tools INFO 2024-02-23 13:24:57,214 [pN:main.1,p:76310,tN:WSGI_2] Validated and populated state for tool request (12.825 ms) +galaxy.tools.actions INFO 2024-02-23 13:24:57,221 [pN:main.1,p:76310,tN:WSGI_2] Handled output named adaptor_report for tool ncbi_fcs_adaptor (3.467 ms) +galaxy.tools.actions INFO 2024-02-23 13:24:57,223 [pN:main.1,p:76310,tN:WSGI_2] Handled output named clean_fasta for tool ncbi_fcs_adaptor (2.550 ms) +galaxy.tools.actions INFO 2024-02-23 13:24:57,240 [pN:main.1,p:76310,tN:WSGI_2] Added output datasets to history (16.898 ms) +galaxy.tools.actions INFO 2024-02-23 13:24:57,242 [pN:main.1,p:76310,tN:WSGI_2] Setup for job Job[unflushed,tool_id=ncbi_fcs_adaptor] complete, ready to be enqueued (1.769 ms) +galaxy.tools.execute DEBUG 2024-02-23 13:24:57,242 [pN:main.1,p:76310,tN:WSGI_2] Tool ncbi_fcs_adaptor created job None (26.970 ms) +galaxy.web_stack.handlers INFO 2024-02-23 13:24:57,270 [pN:main.1,p:76310,tN:WSGI_2] (Job[id=2,tool_id=ncbi_fcs_adaptor]) Handler '_default_' assigned using 'HANDLER_ASSIGNMENT_METHODS.DB_SKIP_LOCKED' assignment method +galaxy.tools.execute DEBUG 2024-02-23 13:24:57,279 [pN:main.1,p:76310,tN:WSGI_2] Created 1 job(s) for tool ncbi_fcs_adaptor request (64.987 ms) + +urllib3.connectionpool DEBUG 2024-02-23 13:24:58,161: Starting new HTTP connection (1): localhost:39427 +urllib3.connectionpool DEBUG 2024-02-23 13:24:58,240: http://localhost:39427 "GET /api/jobs/f7b3fc53f9a1cdab HTTP/1.1" 200 1001 +urllib3.connectionpool DEBUG 2024-02-23 13:24:58,494: Starting new HTTP connection (1): localhost:39427 +urllib3.connectionpool DEBUG 2024-02-23 13:24:58,534: http://localhost:39427 "GET /api/jobs/f7b3fc53f9a1cdab HTTP/1.1" 200 1005 +urllib3.connectionpool DEBUG 2024-02-23 13:24:58,788: Starting new HTTP connection (1): localhost:39427 +urllib3.connectionpool DEBUG 2024-02-23 13:24:58,819: http://localhost:39427 "GET /api/jobs/f7b3fc53f9a1cdab HTTP/1.1" 200 1005 +galaxy.jobs.mapper DEBUG 2024-02-23 13:24:58,083 [pN:main.1,p:76310,tN:JobHandlerQueue.monitor_thread] (2) Mapped job to destination id: docker_local +galaxy.jobs.handler DEBUG 2024-02-23 13:24:58,085 [pN:main.1,p:76310,tN:JobHandlerQueue.monitor_thread] (2) Dispatching to local runner +galaxy.jobs DEBUG 2024-02-23 13:24:58,091 [pN:main.1,p:76310,tN:JobHandlerQueue.monitor_thread] (2) Persisting job destination (destination id: docker_local) +galaxy.jobs DEBUG 2024-02-23 13:24:58,096 [pN:main.1,p:76310,tN:JobHandlerQueue.monitor_thread] (2) Working directory for job is: /tmp/tmpu7x63f_i/job_working_directory/000/2 +galaxy.jobs.runners DEBUG 2024-02-23 13:24:58,104 [pN:main.1,p:76310,tN:JobHandlerQueue.monitor_thread] Job [2] queued (17.918 ms) +galaxy.jobs.handler INFO 2024-02-23 13:24:58,113 [pN:main.1,p:76310,tN:JobHandlerQueue.monitor_thread] (2) Job dispatched +galaxy.security.object_wrapper WARNING 2024-02-23 13:24:58,154 [pN:main.1,p:76310,tN:LocalRunner.work_thread-1] Unable to create dynamic subclass SafeStringWrapper__galaxy.model.none_like.None__NoneType__NotImplementedType__Number__SafeStringWrapper__ToolParameterValueWrapper__bool__bytearray__ellipsis for <class 'galaxy.model.none_like.NoneDataset'>, None: type() doesn't support MRO entry resolution; use types.new_class() +galaxy.jobs DEBUG 2024-02-23 13:24:58,171 [pN:main.1,p:76310,tN:LocalRunner.work_thread-1] Job wrapper for Job [2] prepared (48.293 ms) +galaxy.tool_util.deps.containers INFO 2024-02-23 13:24:58,171 [pN:main.1,p:76310,tN:LocalRunner.work_thread-1] Checking with container resolver [ExplicitContainerResolver[]] found description [ContainerDescription[identifier=ncbi/fcs-adaptor:0.5.0,type=docker]] +galaxy.jobs.command_factory INFO 2024-02-23 13:24:58,228 [pN:main.1,p:76310,tN:LocalRunner.work_thread-1] Built script [/tmp/tmpu7x63f_i/job_working_directory/000/2/tool_script.sh] for tool command [/app/fcs/bin/av_screen_x -o "$(pwd)" '--prok' '/tmp/tmpu7x63f_i/files/e/e/c/dataset_eec98b5f-f9be-4dc5-96b4-503ed9063d81.dat'] +galaxy.jobs.runners DEBUG 2024-02-23 13:24:58,271 [pN:main.1,p:76310,tN:LocalRunner.work_thread-1] (2) command is: mkdir -p working outputs configs +if [ -d _working ]; then + rm -rf working/ outputs/ configs/; cp -R _working working; cp -R _outputs outputs; cp -R _configs configs +else + cp -R working _working; cp -R outputs _outputs; cp -R configs _configs +fi +cd working; +_on_exit() { + docker kill f71ddf064bc8471290726ff32293b0f0 &> /dev/null +} +trap _on_exit EXIT +docker inspect ncbi/fcs-adaptor:0.5.0 > /dev/null 2>&1 +[ $? -ne 0 ] && docker pull ncbi/fcs-adaptor:0.5.0 > /dev/null 2>&1 + +docker run -e "GALAXY_SLOTS=$GALAXY_SLOTS" -e "GALAXY_MEMORY_MB=$GALAXY_MEMORY_MB" -e "GALAXY_MEMORY_MB_PER_SLOT=$GALAXY_MEMORY_MB_PER_SLOT" -e "HOME=$HOME" -e "_GALAXY_JOB_HOME_DIR=$_GALAXY_JOB_HOME_DIR" -e "_GALAXY_JOB_TMP_DIR=$_GALAXY_JOB_TMP_DIR" -e "TMPDIR=$TMPDIR" -e "TMP=$TMP" -e "TEMP=$TEMP" --name f71ddf064bc8471290726ff32293b0f0 -v "$_GALAXY_JOB_TMP_DIR:$_GALAXY_JOB_TMP_DIR:rw" -v "$TMPDIR:$TMPDIR:rw" -v "$TMP:$TMP:rw" -v "$TEMP:$TEMP:rw" -v /scratch/rico/galaxy:/scratch/rico/galaxy:ro -v /scratch/rico/galaxytools/tools/ncbi_fcs_adaptor:/scratch/rico/galaxytools/tools/ncbi_fcs_adaptor:ro -v /tmp/tmpu7x63f_i/job_working_directory/000/2:/tmp/tmpu7x63f_i/job_working_directory/000/2:ro -v /tmp/tmpu7x63f_i/job_working_directory/000/2/outputs:/tmp/tmpu7x63f_i/job_working_directory/000/2/outputs:rw -v "$_GALAXY_JOB_HOME_DIR:$_GALAXY_JOB_HOME_DIR:rw" -v /tmp/tmpu7x63f_i/job_working_directory/000/2/working:/tmp/tmpu7x63f_i/job_working_directory/000/2/working:rw -v /tmp/tmpu7x63f_i/files:/tmp/tmpu7x63f_i/files:ro -v /scratch/rico/galaxy/tool-data:/scratch/rico/galaxy/tool-data:ro --cpus ${GALAXY_SLOTS:-1} -w /tmp/tmpu7x63f_i/job_working_directory/000/2/working --rm --user 1028:1028 ncbi/fcs-adaptor:0.5.0 /bin/sh /tmp/tmpu7x63f_i/job_working_directory/000/2/tool_script.sh > '../outputs/tool_stdout' 2> '../outputs/tool_stderr'; return_code=$?; echo $return_code > /tmp/tmpu7x63f_i/job_working_directory/000/2/galaxy_2.ec; +if [ -f "/tmp/tmpu7x63f_i/job_working_directory/000/2/working/fcs_adaptor_report.txt" ] ; then cp "/tmp/tmpu7x63f_i/job_working_directory/000/2/working/fcs_adaptor_report.txt" "/tmp/tmpu7x63f_i/job_working_directory/000/2/outputs/dataset_1a2ea823-d7e6-495f-a31e-e8d6621f705c.dat" ; fi; +if [ -f "/tmp/tmpu7x63f_i/job_working_directory/000/2/working/cleaned_sequences/"*".dat" ] ; then cp "/tmp/tmpu7x63f_i/job_working_directory/000/2/working/cleaned_sequences/"*".dat" "/tmp/tmpu7x63f_i/job_working_directory/000/2/outputs/dataset_4e39d590-f2e3-4821-87bc-68df5a7106cb.dat" ; fi; cd '/tmp/tmpu7x63f_i/job_working_directory/000/2'; +[ "$GALAXY_VIRTUAL_ENV" = "None" ] && GALAXY_VIRTUAL_ENV="$_GALAXY_VIRTUAL_ENV"; _galaxy_setup_environment True; python metadata/set.py; sh -c "exit $return_code" +galaxy.jobs.runners.local DEBUG 2024-02-23 13:24:58,294 [pN:main.1,p:76310,tN:LocalRunner.work_thread-1] (2) executing job script: /tmp/tmpu7x63f_i/job_working_directory/000/2/galaxy_2.sh + +urllib3.connectionpool DEBUG 2024-02-23 13:24:59,072: Starting new HTTP connection (1): localhost:39427 +urllib3.connectionpool DEBUG 2024-02-23 13:24:59,102: http://localhost:39427 "GET /api/jobs/f7b3fc53f9a1cdab HTTP/1.1" 200 1005 +urllib3.connectionpool DEBUG 2024-02-23 13:24:59,355: Starting new HTTP connection (1): localhost:39427 +urllib3.connectionpool DEBUG 2024-02-23 13:24:59,390: http://localhost:39427 "GET /api/jobs/f7b3fc53f9a1cdab HTTP/1.1" 200 1005 +urllib3.connectionpool DEBUG 2024-02-23 13:24:59,643: Starting new HTTP connection (1): localhost:39427 +urllib3.connectionpool DEBUG 2024-02-23 13:24:59,683: http://localhost:39427 "GET /api/jobs/f7b3fc53f9a1cdab HTTP/1.1" 200 1005 +urllib3.connectionpool DEBUG 2024-02-23 13:24:59,936: Starting new HTTP connection (1): localhost:39427 +urllib3.connectionpool DEBUG 2024-02-23 13:24:59,967: http://localhost:39427 "GET /api/jobs/f7b3fc53f9a1cdab HTTP/1.1" 200 1005 +urllib3.connectionpool DEBUG 2024-02-23 13:25:00,221: Starting new HTTP connection (1): localhost:39427 +urllib3.connectionpool DEBUG 2024-02-23 13:25:00,249: http://localhost:39427 "GET /api/jobs/f7b3fc53f9a1cdab HTTP/1.1" 200 1005 +urllib3.connectionpool DEBUG 2024-02-23 13:25:00,502: Starting new HTTP connection (1): localhost:39427 +urllib3.connectionpool DEBUG 2024-02-23 13:25:00,531: http://localhost:39427 "GET /api/jobs/f7b3fc53f9a1cdab HTTP/1.1" 200 1005 +urllib3.connectionpool DEBUG 2024-02-23 13:25:00,785: Starting new HTTP connection (1): localhost:39427 +urllib3.connectionpool DEBUG 2024-02-23 13:25:00,815: http://localhost:39427 "GET /api/jobs/f7b3fc53f9a1cdab HTTP/1.1" 200 1005 +urllib3.connectionpool DEBUG 2024-02-23 13:25:01,068: Starting new HTTP connection (1): localhost:39427 +urllib3.connectionpool DEBUG 2024-02-23 13:25:01,100: http://localhost:39427 "GET /api/jobs/f7b3fc53f9a1cdab HTTP/1.1" 200 1005 +urllib3.connectionpool DEBUG 2024-02-23 13:25:01,353: Starting new HTTP connection (1): localhost:39427 +urllib3.connectionpool DEBUG 2024-02-23 13:25:01,383: http://localhost:39427 "GET /api/jobs/f7b3fc53f9a1cdab HTTP/1.1" 200 1005 +urllib3.connectionpool DEBUG 2024-02-23 13:25:01,636: Starting new HTTP connection (1): localhost:39427 +urllib3.connectionpool DEBUG 2024-02-23 13:25:01,667: http://localhost:39427 "GET /api/jobs/f7b3fc53f9a1cdab HTTP/1.1" 200 1005 +urllib3.connectionpool DEBUG 2024-02-23 13:25:01,920: Starting new HTTP connection (1): localhost:39427 +urllib3.connectionpool DEBUG 2024-02-23 13:25:01,949: http://localhost:39427 "GET /api/jobs/f7b3fc53f9a1cdab HTTP/1.1" 200 1005 +urllib3.connectionpool DEBUG 2024-02-23 13:25:02,202: Starting new HTTP connection (1): localhost:39427 +urllib3.connectionpool DEBUG 2024-02-23 13:25:02,228: http://localhost:39427 "GET /api/jobs/f7b3fc53f9a1cdab HTTP/1.1" 200 1005 +urllib3.connectionpool DEBUG 2024-02-23 13:25:02,482: Starting new HTTP connection (1): localhost:39427 +urllib3.connectionpool DEBUG 2024-02-23 13:25:02,521: http://localhost:39427 "GET /api/jobs/f7b3fc53f9a1cdab HTTP/1.1" 200 1005 +urllib3.connectionpool DEBUG 2024-02-23 13:25:02,775: Starting new HTTP connection (1): localhost:39427 +urllib3.connectionpool DEBUG 2024-02-23 13:25:02,802: http://localhost:39427 "GET /api/jobs/f7b3fc53f9a1cdab HTTP/1.1" 200 1005 +urllib3.connectionpool DEBUG 2024-02-23 13:25:03,056: Starting new HTTP connection (1): localhost:39427 +urllib3.connectionpool DEBUG 2024-02-23 13:25:03,087: http://localhost:39427 "GET /api/jobs/f7b3fc53f9a1cdab HTTP/1.1" 200 1005 +urllib3.connectionpool DEBUG 2024-02-23 13:25:03,341: Starting new HTTP connection (1): localhost:39427 +urllib3.connectionpool DEBUG 2024-02-23 13:25:03,372: http://localhost:39427 "GET /api/jobs/f7b3fc53f9a1cdab HTTP/1.1" 200 1005 +urllib3.connectionpool DEBUG 2024-02-23 13:25:03,626: Starting new HTTP connection (1): localhost:39427 +urllib3.connectionpool DEBUG 2024-02-23 13:25:03,650: http://localhost:39427 "GET /api/jobs/f7b3fc53f9a1cdab HTTP/1.1" 200 1005 +urllib3.connectionpool DEBUG 2024-02-23 13:25:03,904: Starting new HTTP connection (1): localhost:39427 +urllib3.connectionpool DEBUG 2024-02-23 13:25:03,930: http://localhost:39427 "GET /api/jobs/f7b3fc53f9a1cdab HTTP/1.1" 200 1005 +urllib3.connectionpool DEBUG 2024-02-23 13:25:04,184: Starting new HTTP connection (1): localhost:39427 +urllib3.connectionpool DEBUG 2024-02-23 13:25:04,215: http://localhost:39427 "GET /api/jobs/f7b3fc53f9a1cdab HTTP/1.1" 200 1005 +urllib3.connectionpool DEBUG 2024-02-23 13:25:04,469: Starting new HTTP connection (1): localhost:39427 +urllib3.connectionpool DEBUG 2024-02-23 13:25:04,501: http://localhost:39427 "GET /api/jobs/f7b3fc53f9a1cdab HTTP/1.1" 200 1005 +urllib3.connectionpool DEBUG 2024-02-23 13:25:04,755: Starting new HTTP connection (1): localhost:39427 +urllib3.connectionpool DEBUG 2024-02-23 13:25:04,782: http://localhost:39427 "GET /api/jobs/f7b3fc53f9a1cdab HTTP/1.1" 200 1005 +urllib3.connectionpool DEBUG 2024-02-23 13:25:05,036: Starting new HTTP connection (1): localhost:39427 +urllib3.connectionpool DEBUG 2024-02-23 13:25:05,066: http://localhost:39427 "GET /api/jobs/f7b3fc53f9a1cdab HTTP/1.1" 200 1005 +urllib3.connectionpool DEBUG 2024-02-23 13:25:05,319: Starting new HTTP connection (1): localhost:39427 +urllib3.connectionpool DEBUG 2024-02-23 13:25:05,349: http://localhost:39427 "GET /api/jobs/f7b3fc53f9a1cdab HTTP/1.1" 200 1005 +urllib3.connectionpool DEBUG 2024-02-23 13:25:05,602: Starting new HTTP connection (1): localhost:39427 +urllib3.connectionpool DEBUG 2024-02-23 13:25:05,629: http://localhost:39427 "GET /api/jobs/f7b3fc53f9a1cdab HTTP/1.1" 200 1005 +urllib3.connectionpool DEBUG 2024-02-23 13:25:05,883: Starting new HTTP connection (1): localhost:39427 +urllib3.connectionpool DEBUG 2024-02-23 13:25:05,910: http://localhost:39427 "GET /api/jobs/f7b3fc53f9a1cdab HTTP/1.1" 200 1005 +urllib3.connectionpool DEBUG 2024-02-23 13:25:06,163: Starting new HTTP connection (1): localhost:39427 +urllib3.connectionpool DEBUG 2024-02-23 13:25:06,195: http://localhost:39427 "GET /api/jobs/f7b3fc53f9a1cdab HTTP/1.1" 200 1005 +urllib3.connectionpool DEBUG 2024-02-23 13:25:06,449: Starting new HTTP connection (1): localhost:39427 +urllib3.connectionpool DEBUG 2024-02-23 13:25:06,480: http://localhost:39427 "GET /api/jobs/f7b3fc53f9a1cdab HTTP/1.1" 200 1005 +urllib3.connectionpool DEBUG 2024-02-23 13:25:06,733: Starting new HTTP connection (1): localhost:39427 +urllib3.connectionpool DEBUG 2024-02-23 13:25:06,770: http://localhost:39427 "GET /api/jobs/f7b3fc53f9a1cdab HTTP/1.1" 200 1005 +urllib3.connectionpool DEBUG 2024-02-23 13:25:07,024: Starting new HTTP connection (1): localhost:39427 +urllib3.connectionpool DEBUG 2024-02-23 13:25:07,054: http://localhost:39427 "GET /api/jobs/f7b3fc53f9a1cdab HTTP/1.1" 200 1005 +urllib3.connectionpool DEBUG 2024-02-23 13:25:07,308: Starting new HTTP connection (1): localhost:39427 +urllib3.connectionpool DEBUG 2024-02-23 13:25:07,340: http://localhost:39427 "GET /api/jobs/f7b3fc53f9a1cdab HTTP/1.1" 200 1005 +urllib3.connectionpool DEBUG 2024-02-23 13:25:07,594: Starting new HTTP connection (1): localhost:39427 +urllib3.connectionpool DEBUG 2024-02-23 13:25:07,624: http://localhost:39427 "GET /api/jobs/f7b3fc53f9a1cdab HTTP/1.1" 200 1005 +urllib3.connectionpool DEBUG 2024-02-23 13:25:07,878: Starting new HTTP connection (1): localhost:39427 +urllib3.connectionpool DEBUG 2024-02-23 13:25:07,909: http://localhost:39427 "GET /api/jobs/f7b3fc53f9a1cdab HTTP/1.1" 200 1005 +urllib3.connectionpool DEBUG 2024-02-23 13:25:08,163: Starting new HTTP connection (1): localhost:39427 +urllib3.connectionpool DEBUG 2024-02-23 13:25:08,193: http://localhost:39427 "GET /api/jobs/f7b3fc53f9a1cdab HTTP/1.1" 200 1005 +urllib3.connectionpool DEBUG 2024-02-23 13:25:08,447: Starting new HTTP connection (1): localhost:39427 +urllib3.connectionpool DEBUG 2024-02-23 13:25:08,478: http://localhost:39427 "GET /api/jobs/f7b3fc53f9a1cdab HTTP/1.1" 200 1005 +urllib3.connectionpool DEBUG 2024-02-23 13:25:08,732: Starting new HTTP connection (1): localhost:39427 +urllib3.connectionpool DEBUG 2024-02-23 13:25:08,757: http://localhost:39427 "GET /api/jobs/f7b3fc53f9a1cdab HTTP/1.1" 200 1005 +urllib3.connectionpool DEBUG 2024-02-23 13:25:09,011: Starting new HTTP connection (1): localhost:39427 +urllib3.connectionpool DEBUG 2024-02-23 13:25:09,043: http://localhost:39427 "GET /api/jobs/f7b3fc53f9a1cdab HTTP/1.1" 200 1005 +urllib3.connectionpool DEBUG 2024-02-23 13:25:09,297: Starting new HTTP connection (1): localhost:39427 +urllib3.connectionpool DEBUG 2024-02-23 13:25:09,332: http://localhost:39427 "GET /api/jobs/f7b3fc53f9a1cdab HTTP/1.1" 200 1005 +urllib3.connectionpool DEBUG 2024-02-23 13:25:09,586: Starting new HTTP connection (1): localhost:39427 +urllib3.connectionpool DEBUG 2024-02-23 13:25:09,617: http://localhost:39427 "GET /api/jobs/f7b3fc53f9a1cdab HTTP/1.1" 200 1005 +urllib3.connectionpool DEBUG 2024-02-23 13:25:09,871: Starting new HTTP connection (1): localhost:39427 +urllib3.connectionpool DEBUG 2024-02-23 13:25:09,905: http://localhost:39427 "GET /api/jobs/f7b3fc53f9a1cdab HTTP/1.1" 200 1005 +urllib3.connectionpool DEBUG 2024-02-23 13:25:10,159: Starting new HTTP connection (1): localhost:39427 +urllib3.connectionpool DEBUG 2024-02-23 13:25:10,191: http://localhost:39427 "GET /api/jobs/f7b3fc53f9a1cdab HTTP/1.1" 200 1005 +urllib3.connectionpool DEBUG 2024-02-23 13:25:10,444: Starting new HTTP connection (1): localhost:39427 +urllib3.connectionpool DEBUG 2024-02-23 13:25:10,476: http://localhost:39427 "GET /api/jobs/f7b3fc53f9a1cdab HTTP/1.1" 200 1005 +urllib3.connectionpool DEBUG 2024-02-23 13:25:10,730: Starting new HTTP connection (1): localhost:39427 +urllib3.connectionpool DEBUG 2024-02-23 13:25:10,770: http://localhost:39427 "GET /api/jobs/f7b3fc53f9a1cdab HTTP/1.1" 200 1005 +urllib3.connectionpool DEBUG 2024-02-23 13:25:11,024: Starting new HTTP connection (1): localhost:39427 +urllib3.connectionpool DEBUG 2024-02-23 13:25:11,054: http://localhost:39427 "GET /api/jobs/f7b3fc53f9a1cdab HTTP/1.1" 200 1005 +urllib3.connectionpool DEBUG 2024-02-23 13:25:11,308: Starting new HTTP connection (1): localhost:39427 +urllib3.connectionpool DEBUG 2024-02-23 13:25:11,340: http://localhost:39427 "GET /api/jobs/f7b3fc53f9a1cdab HTTP/1.1" 200 1005 +urllib3.connectionpool DEBUG 2024-02-23 13:25:11,594: Starting new HTTP connection (1): localhost:39427 +urllib3.connectionpool DEBUG 2024-02-23 13:25:11,620: http://localhost:39427 "GET /api/jobs/f7b3fc53f9a1cdab HTTP/1.1" 200 1005 +urllib3.connectionpool DEBUG 2024-02-23 13:25:11,874: Starting new HTTP connection (1): localhost:39427 +urllib3.connectionpool DEBUG 2024-02-23 13:25:11,901: http://localhost:39427 "GET /api/jobs/f7b3fc53f9a1cdab HTTP/1.1" 200 1005 +urllib3.connectionpool DEBUG 2024-02-23 13:25:12,155: Starting new HTTP connection (1): localhost:39427 +urllib3.connectionpool DEBUG 2024-02-23 13:25:12,190: http://localhost:39427 "GET /api/jobs/f7b3fc53f9a1cdab HTTP/1.1" 200 1005 +urllib3.connectionpool DEBUG 2024-02-23 13:25:12,444: Starting new HTTP connection (1): localhost:39427 +urllib3.connectionpool DEBUG 2024-02-23 13:25:12,471: http://localhost:39427 "GET /api/jobs/f7b3fc53f9a1cdab HTTP/1.1" 200 1005 +urllib3.connectionpool DEBUG 2024-02-23 13:25:12,724: Starting new HTTP connection (1): localhost:39427 +urllib3.connectionpool DEBUG 2024-02-23 13:25:12,751: http://localhost:39427 "GET /api/jobs/f7b3fc53f9a1cdab HTTP/1.1" 200 1005 +urllib3.connectionpool DEBUG 2024-02-23 13:25:13,004: Starting new HTTP connection (1): localhost:39427 +urllib3.connectionpool DEBUG 2024-02-23 13:25:13,031: http://localhost:39427 "GET /api/jobs/f7b3fc53f9a1cdab HTTP/1.1" 200 1005 +urllib3.connectionpool DEBUG 2024-02-23 13:25:13,285: Starting new HTTP connection (1): localhost:39427 +urllib3.connectionpool DEBUG 2024-02-23 13:25:13,310: http://localhost:39427 "GET /api/jobs/f7b3fc53f9a1cdab HTTP/1.1" 200 1005 +urllib3.connectionpool DEBUG 2024-02-23 13:25:13,564: Starting new HTTP connection (1): localhost:39427 +urllib3.connectionpool DEBUG 2024-02-23 13:25:13,590: http://localhost:39427 "GET /api/jobs/f7b3fc53f9a1cdab HTTP/1.1" 200 1005 +urllib3.connectionpool DEBUG 2024-02-23 13:25:13,844: Starting new HTTP connection (1): localhost:39427 +urllib3.connectionpool DEBUG 2024-02-23 13:25:13,876: http://localhost:39427 "GET /api/jobs/f7b3fc53f9a1cdab HTTP/1.1" 200 1005 +urllib3.connectionpool DEBUG 2024-02-23 13:25:14,130: Starting new HTTP connection (1): localhost:39427 +urllib3.connectionpool DEBUG 2024-02-23 13:25:14,155: http://localhost:39427 "GET /api/jobs/f7b3fc53f9a1cdab HTTP/1.1" 200 1005 +urllib3.connectionpool DEBUG 2024-02-23 13:25:14,409: Starting new HTTP connection (1): localhost:39427 +urllib3.connectionpool DEBUG 2024-02-23 13:25:14,448: http://localhost:39427 "GET /api/jobs/f7b3fc53f9a1cdab HTTP/1.1" 200 1005 +urllib3.connectionpool DEBUG 2024-02-23 13:25:14,701: Starting new HTTP connection (1): localhost:39427 +urllib3.connectionpool DEBUG 2024-02-23 13:25:14,729: http://localhost:39427 "GET /api/jobs/f7b3fc53f9a1cdab HTTP/1.1" 200 1005 +urllib3.connectionpool DEBUG 2024-02-23 13:25:14,982: Starting new HTTP connection (1): localhost:39427 +urllib3.connectionpool DEBUG 2024-02-23 13:25:15,012: http://localhost:39427 "GET /api/jobs/f7b3fc53f9a1cdab HTTP/1.1" 200 1005 +urllib3.connectionpool DEBUG 2024-02-23 13:25:15,265: Starting new HTTP connection (1): localhost:39427 +urllib3.connectionpool DEBUG 2024-02-23 13:25:15,290: http://localhost:39427 "GET /api/jobs/f7b3fc53f9a1cdab HTTP/1.1" 200 1005 +urllib3.connectionpool DEBUG 2024-02-23 13:25:15,544: Starting new HTTP connection (1): localhost:39427 +urllib3.connectionpool DEBUG 2024-02-23 13:25:15,570: http://localhost:39427 "GET /api/jobs/f7b3fc53f9a1cdab HTTP/1.1" 200 1005 +urllib3.connectionpool DEBUG 2024-02-23 13:25:15,824: Starting new HTTP connection (1): localhost:39427 +urllib3.connectionpool DEBUG 2024-02-23 13:25:15,848: http://localhost:39427 "GET /api/jobs/f7b3fc53f9a1cdab HTTP/1.1" 200 1005 +urllib3.connectionpool DEBUG 2024-02-23 13:25:16,102: Starting new HTTP connection (1): localhost:39427 +urllib3.connectionpool DEBUG 2024-02-23 13:25:16,128: http://localhost:39427 "GET /api/jobs/f7b3fc53f9a1cdab HTTP/1.1" 200 1005 +urllib3.connectionpool DEBUG 2024-02-23 13:25:16,382: Starting new HTTP connection (1): localhost:39427 +urllib3.connectionpool DEBUG 2024-02-23 13:25:16,407: http://localhost:39427 "GET /api/jobs/f7b3fc53f9a1cdab HTTP/1.1" 200 1005 +urllib3.connectionpool DEBUG 2024-02-23 13:25:16,660: Starting new HTTP connection (1): localhost:39427 +urllib3.connectionpool DEBUG 2024-02-23 13:25:16,685: http://localhost:39427 "GET /api/jobs/f7b3fc53f9a1cdab HTTP/1.1" 200 1005 +urllib3.connectionpool DEBUG 2024-02-23 13:25:16,939: Starting new HTTP connection (1): localhost:39427 +urllib3.connectionpool DEBUG 2024-02-23 13:25:16,965: http://localhost:39427 "GET /api/jobs/f7b3fc53f9a1cdab HTTP/1.1" 200 1005 +urllib3.connectionpool DEBUG 2024-02-23 13:25:17,219: Starting new HTTP connection (1): localhost:39427 +urllib3.connectionpool DEBUG 2024-02-23 13:25:17,247: http://localhost:39427 "GET /api/jobs/f7b3fc53f9a1cdab HTTP/1.1" 200 1005 +urllib3.connectionpool DEBUG 2024-02-23 13:25:17,499: Starting new HTTP connection (1): localhost:39427 +urllib3.connectionpool DEBUG 2024-02-23 13:25:17,522: http://localhost:39427 "GET /api/jobs/f7b3fc53f9a1cdab HTTP/1.1" 200 1005 +urllib3.connectionpool DEBUG 2024-02-23 13:25:17,775: Starting new HTTP connection (1): localhost:39427 +urllib3.connectionpool DEBUG 2024-02-23 13:25:17,804: http://localhost:39427 "GET /api/jobs/f7b3fc53f9a1cdab HTTP/1.1" 200 1005 +urllib3.connectionpool DEBUG 2024-02-23 13:25:18,057: Starting new HTTP connection (1): localhost:39427 +urllib3.connectionpool DEBUG 2024-02-23 13:25:18,087: http://localhost:39427 "GET /api/jobs/f7b3fc53f9a1cdab HTTP/1.1" 200 1005 +urllib3.connectionpool DEBUG 2024-02-23 13:25:18,340: Starting new HTTP connection (1): localhost:39427 +urllib3.connectionpool DEBUG 2024-02-23 13:25:18,367: http://localhost:39427 "GET /api/jobs/f7b3fc53f9a1cdab HTTP/1.1" 200 1005 +urllib3.connectionpool DEBUG 2024-02-23 13:25:18,621: Starting new HTTP connection (1): localhost:39427 +urllib3.connectionpool DEBUG 2024-02-23 13:25:18,650: http://localhost:39427 "GET /api/jobs/f7b3fc53f9a1cdab HTTP/1.1" 200 1005 +urllib3.connectionpool DEBUG 2024-02-23 13:25:18,903: Starting new HTTP connection (1): localhost:39427 +urllib3.connectionpool DEBUG 2024-02-23 13:25:18,932: http://localhost:39427 "GET /api/jobs/f7b3fc53f9a1cdab HTTP/1.1" 200 1005 +urllib3.connectionpool DEBUG 2024-02-23 13:25:19,185: Starting new HTTP connection (1): localhost:39427 +urllib3.connectionpool DEBUG 2024-02-23 13:25:19,222: http://localhost:39427 "GET /api/jobs/f7b3fc53f9a1cdab HTTP/1.1" 200 1005 +urllib3.connectionpool DEBUG 2024-02-23 13:25:19,475: Starting new HTTP connection (1): localhost:39427 +urllib3.connectionpool DEBUG 2024-02-23 13:25:19,504: http://localhost:39427 "GET /api/jobs/f7b3fc53f9a1cdab HTTP/1.1" 200 1005 +urllib3.connectionpool DEBUG 2024-02-23 13:25:19,758: Starting new HTTP connection (1): localhost:39427 +urllib3.connectionpool DEBUG 2024-02-23 13:25:19,788: http://localhost:39427 "GET /api/jobs/f7b3fc53f9a1cdab HTTP/1.1" 200 1005 +urllib3.connectionpool DEBUG 2024-02-23 13:25:20,041: Starting new HTTP connection (1): localhost:39427 +urllib3.connectionpool DEBUG 2024-02-23 13:25:20,068: http://localhost:39427 "GET /api/jobs/f7b3fc53f9a1cdab HTTP/1.1" 200 1005 +urllib3.connectionpool DEBUG 2024-02-23 13:25:20,322: Starting new HTTP connection (1): localhost:39427 +urllib3.connectionpool DEBUG 2024-02-23 13:25:20,352: http://localhost:39427 "GET /api/jobs/f7b3fc53f9a1cdab HTTP/1.1" 200 1005 +urllib3.connectionpool DEBUG 2024-02-23 13:25:20,605: Starting new HTTP connection (1): localhost:39427 +urllib3.connectionpool DEBUG 2024-02-23 13:25:20,636: http://localhost:39427 "GET /api/jobs/f7b3fc53f9a1cdab HTTP/1.1" 200 1005 +urllib3.connectionpool DEBUG 2024-02-23 13:25:20,889: Starting new HTTP connection (1): localhost:39427 +urllib3.connectionpool DEBUG 2024-02-23 13:25:20,921: http://localhost:39427 "GET /api/jobs/f7b3fc53f9a1cdab HTTP/1.1" 200 1005 +urllib3.connectionpool DEBUG 2024-02-23 13:25:21,174: Starting new HTTP connection (1): localhost:39427 +urllib3.connectionpool DEBUG 2024-02-23 13:25:21,203: http://localhost:39427 "GET /api/jobs/f7b3fc53f9a1cdab HTTP/1.1" 200 1005 +urllib3.connectionpool DEBUG 2024-02-23 13:25:21,456: Starting new HTTP connection (1): localhost:39427 +urllib3.connectionpool DEBUG 2024-02-23 13:25:21,486: http://localhost:39427 "GET /api/jobs/f7b3fc53f9a1cdab HTTP/1.1" 200 1005 +urllib3.connectionpool DEBUG 2024-02-23 13:25:21,739: Starting new HTTP connection (1): localhost:39427 +urllib3.connectionpool DEBUG 2024-02-23 13:25:21,768: http://localhost:39427 "GET /api/jobs/f7b3fc53f9a1cdab HTTP/1.1" 200 1005 +urllib3.connectionpool DEBUG 2024-02-23 13:25:22,020: Starting new HTTP connection (1): localhost:39427 +urllib3.connectionpool DEBUG 2024-02-23 13:25:22,048: http://localhost:39427 "GET /api/jobs/f7b3fc53f9a1cdab HTTP/1.1" 200 1005 +urllib3.connectionpool DEBUG 2024-02-23 13:25:22,302: Starting new HTTP connection (1): localhost:39427 +urllib3.connectionpool DEBUG 2024-02-23 13:25:22,332: http://localhost:39427 "GET /api/jobs/f7b3fc53f9a1cdab HTTP/1.1" 200 1005 +urllib3.connectionpool DEBUG 2024-02-23 13:25:22,585: Starting new HTTP connection (1): localhost:39427 +urllib3.connectionpool DEBUG 2024-02-23 13:25:22,626: http://localhost:39427 "GET /api/jobs/f7b3fc53f9a1cdab HTTP/1.1" 200 1005 +urllib3.connectionpool DEBUG 2024-02-23 13:25:22,879: Starting new HTTP connection (1): localhost:39427 +urllib3.connectionpool DEBUG 2024-02-23 13:25:22,911: http://localhost:39427 "GET /api/jobs/f7b3fc53f9a1cdab HTTP/1.1" 200 1005 +urllib3.connectionpool DEBUG 2024-02-23 13:25:23,163: Starting new HTTP connection (1): localhost:39427 +urllib3.connectionpool DEBUG 2024-02-23 13:25:23,191: http://localhost:39427 "GET /api/jobs/f7b3fc53f9a1cdab HTTP/1.1" 200 1005 +urllib3.connectionpool DEBUG 2024-02-23 13:25:23,444: Starting new HTTP connection (1): localhost:39427 +urllib3.connectionpool DEBUG 2024-02-23 13:25:23,472: http://localhost:39427 "GET /api/jobs/f7b3fc53f9a1cdab HTTP/1.1" 200 1005 +urllib3.connectionpool DEBUG 2024-02-23 13:25:23,726: Starting new HTTP connection (1): localhost:39427 +urllib3.connectionpool DEBUG 2024-02-23 13:25:23,755: http://localhost:39427 "GET /api/jobs/f7b3fc53f9a1cdab HTTP/1.1" 200 1005 +urllib3.connectionpool DEBUG 2024-02-23 13:25:24,009: Starting new HTTP connection (1): localhost:39427 +urllib3.connectionpool DEBUG 2024-02-23 13:25:24,037: http://localhost:39427 "GET /api/jobs/f7b3fc53f9a1cdab HTTP/1.1" 200 1005 +urllib3.connectionpool DEBUG 2024-02-23 13:25:24,290: Starting new HTTP connection (1): localhost:39427 +urllib3.connectionpool DEBUG 2024-02-23 13:25:24,320: http://localhost:39427 "GET /api/jobs/f7b3fc53f9a1cdab HTTP/1.1" 200 1005 +urllib3.connectionpool DEBUG 2024-02-23 13:25:24,573: Starting new HTTP connection (1): localhost:39427 +urllib3.connectionpool DEBUG 2024-02-23 13:25:24,604: http://localhost:39427 "GET /api/jobs/f7b3fc53f9a1cdab HTTP/1.1" 200 1005 +urllib3.connectionpool DEBUG 2024-02-23 13:25:24,857: Starting new HTTP connection (1): localhost:39427 +urllib3.connectionpool DEBUG 2024-02-23 13:25:24,886: http://localhost:39427 "GET /api/jobs/f7b3fc53f9a1cdab HTTP/1.1" 200 1005 +urllib3.connectionpool DEBUG 2024-02-23 13:25:25,139: Starting new HTTP connection (1): localhost:39427 +urllib3.connectionpool DEBUG 2024-02-23 13:25:25,179: http://localhost:39427 "GET /api/jobs/f7b3fc53f9a1cdab HTTP/1.1" 200 1005 +urllib3.connectionpool DEBUG 2024-02-23 13:25:25,433: Starting new HTTP connection (1): localhost:39427 +urllib3.connectionpool DEBUG 2024-02-23 13:25:25,461: http://localhost:39427 "GET /api/jobs/f7b3fc53f9a1cdab HTTP/1.1" 200 1005 +urllib3.connectionpool DEBUG 2024-02-23 13:25:25,714: Starting new HTTP connection (1): localhost:39427 +urllib3.connectionpool DEBUG 2024-02-23 13:25:25,743: http://localhost:39427 "GET /api/jobs/f7b3fc53f9a1cdab HTTP/1.1" 200 1005 +urllib3.connectionpool DEBUG 2024-02-23 13:25:25,996: Starting new HTTP connection (1): localhost:39427 +urllib3.connectionpool DEBUG 2024-02-23 13:25:26,026: http://localhost:39427 "GET /api/jobs/f7b3fc53f9a1cdab HTTP/1.1" 200 1005 +urllib3.connectionpool DEBUG 2024-02-23 13:25:26,280: Starting new HTTP connection (1): localhost:39427 +urllib3.connectionpool DEBUG 2024-02-23 13:25:26,309: http://localhost:39427 "GET /api/jobs/f7b3fc53f9a1cdab HTTP/1.1" 200 1005 +urllib3.connectionpool DEBUG 2024-02-23 13:25:26,563: Starting new HTTP connection (1): localhost:39427 +urllib3.connectionpool DEBUG 2024-02-23 13:25:26,593: http://localhost:39427 "GET /api/jobs/f7b3fc53f9a1cdab HTTP/1.1" 200 1005 +urllib3.connectionpool DEBUG 2024-02-23 13:25:26,846: Starting new HTTP connection (1): localhost:39427 +urllib3.connectionpool DEBUG 2024-02-23 13:25:26,877: http://localhost:39427 "GET /api/jobs/f7b3fc53f9a1cdab HTTP/1.1" 200 1005 +urllib3.connectionpool DEBUG 2024-02-23 13:25:27,135: Starting new HTTP connection (1): localhost:39427 +urllib3.connectionpool DEBUG 2024-02-23 13:25:27,163: http://localhost:39427 "GET /api/jobs/f7b3fc53f9a1cdab HTTP/1.1" 200 1005 +urllib3.connectionpool DEBUG 2024-02-23 13:25:27,416: Starting new HTTP connection (1): localhost:39427 +urllib3.connectionpool DEBUG 2024-02-23 13:25:27,446: http://localhost:39427 "GET /api/jobs/f7b3fc53f9a1cdab HTTP/1.1" 200 1005 +urllib3.connectionpool DEBUG 2024-02-23 13:25:27,700: Starting new HTTP connection (1): localhost:39427 +urllib3.connectionpool DEBUG 2024-02-23 13:25:27,740: http://localhost:39427 "GET /api/jobs/f7b3fc53f9a1cdab HTTP/1.1" 200 1005 +urllib3.connectionpool DEBUG 2024-02-23 13:25:27,993: Starting new HTTP connection (1): localhost:39427 +urllib3.connectionpool DEBUG 2024-02-23 13:25:28,027: http://localhost:39427 "GET /api/jobs/f7b3fc53f9a1cdab HTTP/1.1" 200 1005 +urllib3.connectionpool DEBUG 2024-02-23 13:25:28,280: Starting new HTTP connection (1): localhost:39427 +urllib3.connectionpool DEBUG 2024-02-23 13:25:28,309: http://localhost:39427 "GET /api/jobs/f7b3fc53f9a1cdab HTTP/1.1" 200 1005 +urllib3.connectionpool DEBUG 2024-02-23 13:25:28,562: Starting new HTTP connection (1): localhost:39427 +urllib3.connectionpool DEBUG 2024-02-23 13:25:28,591: http://localhost:39427 "GET /api/jobs/f7b3fc53f9a1cdab HTTP/1.1" 200 1005 +urllib3.connectionpool DEBUG 2024-02-23 13:25:28,845: Starting new HTTP connection (1): localhost:39427 +urllib3.connectionpool DEBUG 2024-02-23 13:25:28,875: http://localhost:39427 "GET /api/jobs/f7b3fc53f9a1cdab HTTP/1.1" 200 1005 +urllib3.connectionpool DEBUG 2024-02-23 13:25:29,128: Starting new HTTP connection (1): localhost:39427 +urllib3.connectionpool DEBUG 2024-02-23 13:25:29,161: http://localhost:39427 "GET /api/jobs/f7b3fc53f9a1cdab HTTP/1.1" 200 1005 +urllib3.connectionpool DEBUG 2024-02-23 13:25:29,415: Starting new HTTP connection (1): localhost:39427 +urllib3.connectionpool DEBUG 2024-02-23 13:25:29,447: http://localhost:39427 "GET /api/jobs/f7b3fc53f9a1cdab HTTP/1.1" 200 1005 +urllib3.connectionpool DEBUG 2024-02-23 13:25:29,700: Starting new HTTP connection (1): localhost:39427 +urllib3.connectionpool DEBUG 2024-02-23 13:25:29,730: http://localhost:39427 "GET /api/jobs/f7b3fc53f9a1cdab HTTP/1.1" 200 1005 +urllib3.connectionpool DEBUG 2024-02-23 13:25:29,984: Starting new HTTP connection (1): localhost:39427 +urllib3.connectionpool DEBUG 2024-02-23 13:25:30,015: http://localhost:39427 "GET /api/jobs/f7b3fc53f9a1cdab HTTP/1.1" 200 1005 +urllib3.connectionpool DEBUG 2024-02-23 13:25:30,268: Starting new HTTP connection (1): localhost:39427 +urllib3.connectionpool DEBUG 2024-02-23 13:25:30,301: http://localhost:39427 "GET /api/jobs/f7b3fc53f9a1cdab HTTP/1.1" 200 1005 +urllib3.connectionpool DEBUG 2024-02-23 13:25:30,555: Starting new HTTP connection (1): localhost:39427 +urllib3.connectionpool DEBUG 2024-02-23 13:25:30,588: http://localhost:39427 "GET /api/jobs/f7b3fc53f9a1cdab HTTP/1.1" 200 1005 +urllib3.connectionpool DEBUG 2024-02-23 13:25:30,842: Starting new HTTP connection (1): localhost:39427 +urllib3.connectionpool DEBUG 2024-02-23 13:25:30,874: http://localhost:39427 "GET /api/jobs/f7b3fc53f9a1cdab HTTP/1.1" 200 1005 +urllib3.connectionpool DEBUG 2024-02-23 13:25:31,127: Starting new HTTP connection (1): localhost:39427 +urllib3.connectionpool DEBUG 2024-02-23 13:25:31,158: http://localhost:39427 "GET /api/jobs/f7b3fc53f9a1cdab HTTP/1.1" 200 1005 +urllib3.connectionpool DEBUG 2024-02-23 13:25:31,412: Starting new HTTP connection (1): localhost:39427 +urllib3.connectionpool DEBUG 2024-02-23 13:25:31,445: http://localhost:39427 "GET /api/jobs/f7b3fc53f9a1cdab HTTP/1.1" 200 1005 +urllib3.connectionpool DEBUG 2024-02-23 13:25:31,698: Starting new HTTP connection (1): localhost:39427 +urllib3.connectionpool DEBUG 2024-02-23 13:25:31,730: http://localhost:39427 "GET /api/jobs/f7b3fc53f9a1cdab HTTP/1.1" 200 1005 +urllib3.connectionpool DEBUG 2024-02-23 13:25:31,984: Starting new HTTP connection (1): localhost:39427 +urllib3.connectionpool DEBUG 2024-02-23 13:25:32,016: http://localhost:39427 "GET /api/jobs/f7b3fc53f9a1cdab HTTP/1.1" 200 1005 +urllib3.connectionpool DEBUG 2024-02-23 13:25:32,270: Starting new HTTP connection (1): localhost:39427 +urllib3.connectionpool DEBUG 2024-02-23 13:25:32,300: http://localhost:39427 "GET /api/jobs/f7b3fc53f9a1cdab HTTP/1.1" 200 1005 +urllib3.connectionpool DEBUG 2024-02-23 13:25:32,554: Starting new HTTP connection (1): localhost:39427 +urllib3.connectionpool DEBUG 2024-02-23 13:25:32,585: http://localhost:39427 "GET /api/jobs/f7b3fc53f9a1cdab HTTP/1.1" 200 1005 +urllib3.connectionpool DEBUG 2024-02-23 13:25:32,838: Starting new HTTP connection (1): localhost:39427 +urllib3.connectionpool DEBUG 2024-02-23 13:25:32,869: http://localhost:39427 "GET /api/jobs/f7b3fc53f9a1cdab HTTP/1.1" 200 1005 +urllib3.connectionpool DEBUG 2024-02-23 13:25:33,123: Starting new HTTP connection (1): localhost:39427 +urllib3.connectionpool DEBUG 2024-02-23 13:25:33,153: http://localhost:39427 "GET /api/jobs/f7b3fc53f9a1cdab HTTP/1.1" 200 1005 +urllib3.connectionpool DEBUG 2024-02-23 13:25:33,407: Starting new HTTP connection (1): localhost:39427 +urllib3.connectionpool DEBUG 2024-02-23 13:25:33,458: http://localhost:39427 "GET /api/jobs/f7b3fc53f9a1cdab HTTP/1.1" 200 1005 +urllib3.connectionpool DEBUG 2024-02-23 13:25:33,712: Starting new HTTP connection (1): localhost:39427 +urllib3.connectionpool DEBUG 2024-02-23 13:25:33,744: http://localhost:39427 "GET /api/jobs/f7b3fc53f9a1cdab HTTP/1.1" 200 1005 +urllib3.connectionpool DEBUG 2024-02-23 13:25:33,998: Starting new HTTP connection (1): localhost:39427 +urllib3.connectionpool DEBUG 2024-02-23 13:25:34,029: http://localhost:39427 "GET /api/jobs/f7b3fc53f9a1cdab HTTP/1.1" 200 1005 +urllib3.connectionpool DEBUG 2024-02-23 13:25:34,282: Starting new HTTP connection (1): localhost:39427 +urllib3.connectionpool DEBUG 2024-02-23 13:25:34,313: http://localhost:39427 "GET /api/jobs/f7b3fc53f9a1cdab HTTP/1.1" 200 1005 +urllib3.connectionpool DEBUG 2024-02-23 13:25:34,567: Starting new HTTP connection (1): localhost:39427 +urllib3.connectionpool DEBUG 2024-02-23 13:25:34,602: http://localhost:39427 "GET /api/jobs/f7b3fc53f9a1cdab HTTP/1.1" 200 1005 +urllib3.connectionpool DEBUG 2024-02-23 13:25:34,855: Starting new HTTP connection (1): localhost:39427 +urllib3.connectionpool DEBUG 2024-02-23 13:25:34,900: http://localhost:39427 "GET /api/jobs/f7b3fc53f9a1cdab HTTP/1.1" 200 1005 +urllib3.connectionpool DEBUG 2024-02-23 13:25:35,153: Starting new HTTP connection (1): localhost:39427 +urllib3.connectionpool DEBUG 2024-02-23 13:25:35,185: http://localhost:39427 "GET /api/jobs/f7b3fc53f9a1cdab HTTP/1.1" 200 1005 +urllib3.connectionpool DEBUG 2024-02-23 13:25:35,438: Starting new HTTP connection (1): localhost:39427 +urllib3.connectionpool DEBUG 2024-02-23 13:25:35,471: http://localhost:39427 "GET /api/jobs/f7b3fc53f9a1cdab HTTP/1.1" 200 1005 +urllib3.connectionpool DEBUG 2024-02-23 13:25:35,724: Starting new HTTP connection (1): localhost:39427 +urllib3.connectionpool DEBUG 2024-02-23 13:25:35,762: http://localhost:39427 "GET /api/jobs/f7b3fc53f9a1cdab HTTP/1.1" 200 1005 +urllib3.connectionpool DEBUG 2024-02-23 13:25:36,015: Starting new HTTP connection (1): localhost:39427 +urllib3.connectionpool DEBUG 2024-02-23 13:25:36,050: http://localhost:39427 "GET /api/jobs/f7b3fc53f9a1cdab HTTP/1.1" 200 1005 +urllib3.connectionpool DEBUG 2024-02-23 13:25:36,303: Starting new HTTP connection (1): localhost:39427 +urllib3.connectionpool DEBUG 2024-02-23 13:25:36,336: http://localhost:39427 "GET /api/jobs/f7b3fc53f9a1cdab HTTP/1.1" 200 1005 +urllib3.connectionpool DEBUG 2024-02-23 13:25:36,589: Starting new HTTP connection (1): localhost:39427 +urllib3.connectionpool DEBUG 2024-02-23 13:25:36,631: http://localhost:39427 "GET /api/jobs/f7b3fc53f9a1cdab HTTP/1.1" 200 1005 +urllib3.connectionpool DEBUG 2024-02-23 13:25:36,884: Starting new HTTP connection (1): localhost:39427 +urllib3.connectionpool DEBUG 2024-02-23 13:25:36,918: http://localhost:39427 "GET /api/jobs/f7b3fc53f9a1cdab HTTP/1.1" 200 1005 +urllib3.connectionpool DEBUG 2024-02-23 13:25:37,172: Starting new HTTP connection (1): localhost:39427 +urllib3.connectionpool DEBUG 2024-02-23 13:25:37,204: http://localhost:39427 "GET /api/jobs/f7b3fc53f9a1cdab HTTP/1.1" 200 1005 +urllib3.connectionpool DEBUG 2024-02-23 13:25:37,463: Starting new HTTP connection (1): localhost:39427 +urllib3.connectionpool DEBUG 2024-02-23 13:25:37,492: http://localhost:39427 "GET /api/jobs/f7b3fc53f9a1cdab HTTP/1.1" 200 1005 +urllib3.connectionpool DEBUG 2024-02-23 13:25:37,746: Starting new HTTP connection (1): localhost:39427 +urllib3.connectionpool DEBUG 2024-02-23 13:25:37,783: http://localhost:39427 "GET /api/jobs/f7b3fc53f9a1cdab HTTP/1.1" 200 1005 +urllib3.connectionpool DEBUG 2024-02-23 13:25:38,037: Starting new HTTP connection (1): localhost:39427 +urllib3.connectionpool DEBUG 2024-02-23 13:25:38,068: http://localhost:39427 "GET /api/jobs/f7b3fc53f9a1cdab HTTP/1.1" 200 1005 +urllib3.connectionpool DEBUG 2024-02-23 13:25:38,321: Starting new HTTP connection (1): localhost:39427 +urllib3.connectionpool DEBUG 2024-02-23 13:25:38,353: http://localhost:39427 "GET /api/jobs/f7b3fc53f9a1cdab HTTP/1.1" 200 1005 +urllib3.connectionpool DEBUG 2024-02-23 13:25:38,606: Starting new HTTP connection (1): localhost:39427 +urllib3.connectionpool DEBUG 2024-02-23 13:25:38,639: http://localhost:39427 "GET /api/jobs/f7b3fc53f9a1cdab HTTP/1.1" 200 1005 +urllib3.connectionpool DEBUG 2024-02-23 13:25:38,893: Starting new HTTP connection (1): localhost:39427 +urllib3.connectionpool DEBUG 2024-02-23 13:25:38,927: http://localhost:39427 "GET /api/jobs/f7b3fc53f9a1cdab HTTP/1.1" 200 1005 +urllib3.connectionpool DEBUG 2024-02-23 13:25:39,181: Starting new HTTP connection (1): localhost:39427 +urllib3.connectionpool DEBUG 2024-02-23 13:25:39,212: http://localhost:39427 "GET /api/jobs/f7b3fc53f9a1cdab HTTP/1.1" 200 1005 +urllib3.connectionpool DEBUG 2024-02-23 13:25:39,466: Starting new HTTP connection (1): localhost:39427 +urllib3.connectionpool DEBUG 2024-02-23 13:25:39,499: http://localhost:39427 "GET /api/jobs/f7b3fc53f9a1cdab HTTP/1.1" 200 1005 +urllib3.connectionpool DEBUG 2024-02-23 13:25:39,752: Starting new HTTP connection (1): localhost:39427 +urllib3.connectionpool DEBUG 2024-02-23 13:25:39,787: http://localhost:39427 "GET /api/jobs/f7b3fc53f9a1cdab HTTP/1.1" 200 1005 +urllib3.connectionpool DEBUG 2024-02-23 13:25:40,041: Starting new HTTP connection (1): localhost:39427 +urllib3.connectionpool DEBUG 2024-02-23 13:25:40,075: http://localhost:39427 "GET /api/jobs/f7b3fc53f9a1cdab HTTP/1.1" 200 1005 +urllib3.connectionpool DEBUG 2024-02-23 13:25:40,328: Starting new HTTP connection (1): localhost:39427 +urllib3.connectionpool DEBUG 2024-02-23 13:25:40,361: http://localhost:39427 "GET /api/jobs/f7b3fc53f9a1cdab HTTP/1.1" 200 1005 +urllib3.connectionpool DEBUG 2024-02-23 13:25:40,615: Starting new HTTP connection (1): localhost:39427 +urllib3.connectionpool DEBUG 2024-02-23 13:25:40,648: http://localhost:39427 "GET /api/jobs/f7b3fc53f9a1cdab HTTP/1.1" 200 1005 +urllib3.connectionpool DEBUG 2024-02-23 13:25:40,902: Starting new HTTP connection (1): localhost:39427 +urllib3.connectionpool DEBUG 2024-02-23 13:25:40,935: http://localhost:39427 "GET /api/jobs/f7b3fc53f9a1cdab HTTP/1.1" 200 1005 +urllib3.connectionpool DEBUG 2024-02-23 13:25:41,189: Starting new HTTP connection (1): localhost:39427 +urllib3.connectionpool DEBUG 2024-02-23 13:25:41,220: http://localhost:39427 "GET /api/jobs/f7b3fc53f9a1cdab HTTP/1.1" 200 1005 +urllib3.connectionpool DEBUG 2024-02-23 13:25:41,474: Starting new HTTP connection (1): localhost:39427 +urllib3.connectionpool DEBUG 2024-02-23 13:25:41,506: http://localhost:39427 "GET /api/jobs/f7b3fc53f9a1cdab HTTP/1.1" 200 1005 +urllib3.connectionpool DEBUG 2024-02-23 13:25:41,760: Starting new HTTP connection (1): localhost:39427 +urllib3.connectionpool DEBUG 2024-02-23 13:25:41,789: http://localhost:39427 "GET /api/jobs/f7b3fc53f9a1cdab HTTP/1.1" 200 1005 +urllib3.connectionpool DEBUG 2024-02-23 13:25:42,042: Starting new HTTP connection (1): localhost:39427 +urllib3.connectionpool DEBUG 2024-02-23 13:25:42,095: http://localhost:39427 "GET /api/jobs/f7b3fc53f9a1cdab HTTP/1.1" 200 1005 +urllib3.connectionpool DEBUG 2024-02-23 13:25:42,349: Starting new HTTP connection (1): localhost:39427 +urllib3.connectionpool DEBUG 2024-02-23 13:25:42,383: http://localhost:39427 "GET /api/jobs/f7b3fc53f9a1cdab HTTP/1.1" 200 1005 +urllib3.connectionpool DEBUG 2024-02-23 13:25:42,637: Starting new HTTP connection (1): localhost:39427 +urllib3.connectionpool DEBUG 2024-02-23 13:25:42,668: http://localhost:39427 "GET /api/jobs/f7b3fc53f9a1cdab HTTP/1.1" 200 1005 +urllib3.connectionpool DEBUG 2024-02-23 13:25:42,922: Starting new HTTP connection (1): localhost:39427 +urllib3.connectionpool DEBUG 2024-02-23 13:25:42,954: http://localhost:39427 "GET /api/jobs/f7b3fc53f9a1cdab HTTP/1.1" 200 1005 +urllib3.connectionpool DEBUG 2024-02-23 13:25:43,208: Starting new HTTP connection (1): localhost:39427 +urllib3.connectionpool DEBUG 2024-02-23 13:25:43,240: http://localhost:39427 "GET /api/jobs/f7b3fc53f9a1cdab HTTP/1.1" 200 1005 +urllib3.connectionpool DEBUG 2024-02-23 13:25:43,494: Starting new HTTP connection (1): localhost:39427 +urllib3.connectionpool DEBUG 2024-02-23 13:25:43,526: http://localhost:39427 "GET /api/jobs/f7b3fc53f9a1cdab HTTP/1.1" 200 1005 +urllib3.connectionpool DEBUG 2024-02-23 13:25:43,779: Starting new HTTP connection (1): localhost:39427 +urllib3.connectionpool DEBUG 2024-02-23 13:25:43,831: http://localhost:39427 "GET /api/jobs/f7b3fc53f9a1cdab HTTP/1.1" 200 1005 +urllib3.connectionpool DEBUG 2024-02-23 13:25:44,085: Starting new HTTP connection (1): localhost:39427 +urllib3.connectionpool DEBUG 2024-02-23 13:25:44,120: http://localhost:39427 "GET /api/jobs/f7b3fc53f9a1cdab HTTP/1.1" 200 1005 +urllib3.connectionpool DEBUG 2024-02-23 13:25:44,374: Starting new HTTP connection (1): localhost:39427 +urllib3.connectionpool DEBUG 2024-02-23 13:25:44,407: http://localhost:39427 "GET /api/jobs/f7b3fc53f9a1cdab HTTP/1.1" 200 1005 +urllib3.connectionpool DEBUG 2024-02-23 13:25:44,661: Starting new HTTP connection (1): localhost:39427 +urllib3.connectionpool DEBUG 2024-02-23 13:25:44,692: http://localhost:39427 "GET /api/jobs/f7b3fc53f9a1cdab HTTP/1.1" 200 1005 +urllib3.connectionpool DEBUG 2024-02-23 13:25:44,946: Starting new HTTP connection (1): localhost:39427 +urllib3.connectionpool DEBUG 2024-02-23 13:25:44,977: http://localhost:39427 "GET /api/jobs/f7b3fc53f9a1cdab HTTP/1.1" 200 1005 +urllib3.connectionpool DEBUG 2024-02-23 13:25:45,230: Starting new HTTP connection (1): localhost:39427 +urllib3.connectionpool DEBUG 2024-02-23 13:25:45,261: http://localhost:39427 "GET /api/jobs/f7b3fc53f9a1cdab HTTP/1.1" 200 1005 +urllib3.connectionpool DEBUG 2024-02-23 13:25:45,515: Starting new HTTP connection (1): localhost:39427 +urllib3.connectionpool DEBUG 2024-02-23 13:25:45,546: http://localhost:39427 "GET /api/jobs/f7b3fc53f9a1cdab HTTP/1.1" 200 1005 +urllib3.connectionpool DEBUG 2024-02-23 13:25:45,799: Starting new HTTP connection (1): localhost:39427 +urllib3.connectionpool DEBUG 2024-02-23 13:25:45,832: http://localhost:39427 "GET /api/jobs/f7b3fc53f9a1cdab HTTP/1.1" 200 1005 +urllib3.connectionpool DEBUG 2024-02-23 13:25:46,085: Starting new HTTP connection (1): localhost:39427 +urllib3.connectionpool DEBUG 2024-02-23 13:25:46,127: http://localhost:39427 "GET /api/jobs/f7b3fc53f9a1cdab HTTP/1.1" 200 1005 +urllib3.connectionpool DEBUG 2024-02-23 13:25:46,381: Starting new HTTP connection (1): localhost:39427 +urllib3.connectionpool DEBUG 2024-02-23 13:25:46,412: http://localhost:39427 "GET /api/jobs/f7b3fc53f9a1cdab HTTP/1.1" 200 1005 +urllib3.connectionpool DEBUG 2024-02-23 13:25:46,666: Starting new HTTP connection (1): localhost:39427 +urllib3.connectionpool DEBUG 2024-02-23 13:25:46,697: http://localhost:39427 "GET /api/jobs/f7b3fc53f9a1cdab HTTP/1.1" 200 1005 +urllib3.connectionpool DEBUG 2024-02-23 13:25:46,950: Starting new HTTP connection (1): localhost:39427 +urllib3.connectionpool DEBUG 2024-02-23 13:25:46,979: http://localhost:39427 "GET /api/jobs/f7b3fc53f9a1cdab HTTP/1.1" 200 1005 +urllib3.connectionpool DEBUG 2024-02-23 13:25:47,233: Starting new HTTP connection (1): localhost:39427 +urllib3.connectionpool DEBUG 2024-02-23 13:25:47,270: http://localhost:39427 "GET /api/jobs/f7b3fc53f9a1cdab HTTP/1.1" 200 1005 +urllib3.connectionpool DEBUG 2024-02-23 13:25:47,524: Starting new HTTP connection (1): localhost:39427 +urllib3.connectionpool DEBUG 2024-02-23 13:25:47,560: http://localhost:39427 "GET /api/jobs/f7b3fc53f9a1cdab HTTP/1.1" 200 1005 +urllib3.connectionpool DEBUG 2024-02-23 13:25:47,814: Starting new HTTP connection (1): localhost:39427 +urllib3.connectionpool DEBUG 2024-02-23 13:25:47,849: http://localhost:39427 "GET /api/jobs/f7b3fc53f9a1cdab HTTP/1.1" 200 1005 +urllib3.connectionpool DEBUG 2024-02-23 13:25:48,104: Starting new HTTP connection (1): localhost:39427 +urllib3.connectionpool DEBUG 2024-02-23 13:25:48,135: http://localhost:39427 "GET /api/jobs/f7b3fc53f9a1cdab HTTP/1.1" 200 1005 +urllib3.connectionpool DEBUG 2024-02-23 13:25:48,389: Starting new HTTP connection (1): localhost:39427 +urllib3.connectionpool DEBUG 2024-02-23 13:25:48,419: http://localhost:39427 "GET /api/jobs/f7b3fc53f9a1cdab HTTP/1.1" 200 1005 +urllib3.connectionpool DEBUG 2024-02-23 13:25:48,673: Starting new HTTP connection (1): localhost:39427 +urllib3.connectionpool DEBUG 2024-02-23 13:25:48,703: http://localhost:39427 "GET /api/jobs/f7b3fc53f9a1cdab HTTP/1.1" 200 1005 +urllib3.connectionpool DEBUG 2024-02-23 13:25:48,957: Starting new HTTP connection (1): localhost:39427 +urllib3.connectionpool DEBUG 2024-02-23 13:25:48,982: http://localhost:39427 "GET /api/jobs/f7b3fc53f9a1cdab HTTP/1.1" 200 1005 +urllib3.connectionpool DEBUG 2024-02-23 13:25:49,236: Starting new HTTP connection (1): localhost:39427 +urllib3.connectionpool DEBUG 2024-02-23 13:25:49,275: http://localhost:39427 "GET /api/jobs/f7b3fc53f9a1cdab HTTP/1.1" 200 1005 +urllib3.connectionpool DEBUG 2024-02-23 13:25:49,529: Starting new HTTP connection (1): localhost:39427 +urllib3.connectionpool DEBUG 2024-02-23 13:25:49,560: http://localhost:39427 "GET /api/jobs/f7b3fc53f9a1cdab HTTP/1.1" 200 1005 +urllib3.connectionpool DEBUG 2024-02-23 13:25:49,814: Starting new HTTP connection (1): localhost:39427 +urllib3.connectionpool DEBUG 2024-02-23 13:25:49,845: http://localhost:39427 "GET /api/jobs/f7b3fc53f9a1cdab HTTP/1.1" 200 1005 +galaxy.jobs.runners.util.process_groups DEBUG 2024-02-23 13:25:49,969 [pN:main.1,p:76310,tN:LocalRunner.work_thread-1] check_pg(): No process found in process group 76490 +galaxy.jobs.runners.local DEBUG 2024-02-23 13:25:49,970 [pN:main.1,p:76310,tN:LocalRunner.work_thread-1] execution finished: /tmp/tmpu7x63f_i/job_working_directory/000/2/galaxy_2.sh + +urllib3.connectionpool DEBUG 2024-02-23 13:25:50,100: Starting new HTTP connection (1): localhost:39427 +urllib3.connectionpool DEBUG 2024-02-23 13:25:50,130: http://localhost:39427 "GET /api/jobs/f7b3fc53f9a1cdab HTTP/1.1" 200 995 +urllib3.connectionpool DEBUG 2024-02-23 13:25:50,134: Starting new HTTP connection (1): localhost:39427 +urllib3.connectionpool DEBUG 2024-02-23 13:25:50,173: http://localhost:39427 "GET /api/jobs/f7b3fc53f9a1cdab?full=true HTTP/1.1" 200 23769 +urllib3.connectionpool DEBUG 2024-02-23 13:25:50,177: Starting new HTTP connection (1): localhost:39427 +urllib3.connectionpool DEBUG 2024-02-23 13:25:50,208: http://localhost:39427 "GET /api/jobs/f7b3fc53f9a1cdab HTTP/1.1" 200 995 +urllib3.connectionpool DEBUG 2024-02-23 13:25:50,212: Starting new HTTP connection (1): localhost:39427 +urllib3.connectionpool DEBUG 2024-02-23 13:25:50,246: http://localhost:39427 "GET /api/histories/d18be19a19c462e2/contents/f7b3fc53f9a1cdab/display?raw=true HTTP/1.1" 200 747 +urllib3.connectionpool DEBUG 2024-02-23 13:25:50,251: Starting new HTTP connection (1): localhost:39427 +urllib3.connectionpool DEBUG 2024-02-23 13:25:50,292: http://localhost:39427 "GET /api/tools/ncbi_fcs_adaptor/test_data_download?filename=adaptor_report.tab&tool_version=0.5.0+galaxy0 HTTP/1.1" 200 None +urllib3.connectionpool DEBUG 2024-02-23 13:25:50,299: Starting new HTTP connection (1): localhost:39427 +urllib3.connectionpool DEBUG 2024-02-23 13:25:50,355: http://localhost:39427 "GET /api/histories/d18be19a19c462e2/contents/f7b3fc53f9a1cdab HTTP/1.1" 200 2910 +urllib3.connectionpool DEBUG 2024-02-23 13:25:50,358: Starting new HTTP connection (1): localhost:39427 +urllib3.connectionpool DEBUG 2024-02-23 13:25:50,385: http://localhost:39427 "GET /api/histories/d18be19a19c462e2/contents/f7b3fc53f9a1cdab/provenance HTTP/1.1" 200 None +urllib3.connectionpool DEBUG 2024-02-23 13:25:50,389: Starting new HTTP connection (1): localhost:39427 +urllib3.connectionpool DEBUG 2024-02-23 13:25:50,412: http://localhost:39427 "GET /api/jobs/f7b3fc53f9a1cdab/outputs HTTP/1.1" 200 146 +urllib3.connectionpool DEBUG 2024-02-23 13:25:50,416: Starting new HTTP connection (1): localhost:39427 +urllib3.connectionpool DEBUG 2024-02-23 13:25:50,446: http://localhost:39427 "GET /api/jobs/f7b3fc53f9a1cdab HTTP/1.1" 200 995 +urllib3.connectionpool DEBUG 2024-02-23 13:25:50,450: Starting new HTTP connection (1): localhost:39427 +urllib3.connectionpool DEBUG 2024-02-23 13:25:50,473: http://localhost:39427 "GET /api/histories/d18be19a19c462e2/contents/e83007cfd86577e9/display?raw=true HTTP/1.1" 200 516117 +urllib3.connectionpool DEBUG 2024-02-23 13:25:50,485: Starting new HTTP connection (1): localhost:39427 +urllib3.connectionpool DEBUG 2024-02-23 13:25:50,506: http://localhost:39427 "GET /api/tools/ncbi_fcs_adaptor/test_data_download?filename=clean_fasta.fa.gz&tool_version=0.5.0+galaxy0 HTTP/1.1" 200 None +urllib3.connectionpool DEBUG 2024-02-23 13:25:50,604: Starting new HTTP connection (1): localhost:39427 +urllib3.connectionpool DEBUG 2024-02-23 13:25:50,659: http://localhost:39427 "GET /api/histories/d18be19a19c462e2/contents/e83007cfd86577e9 HTTP/1.1" 200 2257 +urllib3.connectionpool DEBUG 2024-02-23 13:25:50,663: Starting new HTTP connection (1): localhost:39427 +urllib3.connectionpool DEBUG 2024-02-23 13:25:50,691: http://localhost:39427 "GET /api/histories/d18be19a19c462e2/contents/e83007cfd86577e9/provenance HTTP/1.1" 200 None +urllib3.connectionpool DEBUG 2024-02-23 13:25:50,695: Starting new HTTP connection (1): localhost:39427 +urllib3.connectionpool DEBUG 2024-02-23 13:25:50,719: http://localhost:39427 "GET /api/jobs/f7b3fc53f9a1cdab/outputs HTTP/1.1" 200 146 +urllib3.connectionpool DEBUG 2024-02-23 13:25:50,722: Starting new HTTP connection (1): localhost:39427 +urllib3.connectionpool DEBUG 2024-02-23 13:25:50,770: http://localhost:39427 "DELETE /api/histories/d18be19a19c462e2 HTTP/1.1" 200 1061 +urllib3.connectionpool DEBUG 2024-02-23 13:25:50,774: Starting new HTTP connection (1): localhost:39427 +urllib3.connectionpool DEBUG 2024-02-23 13:25:50,797: http://localhost:39427 "GET /api/tools/ncbi_fcs_adaptor/test_data?tool_version=0.5.0%2Bgalaxy0 HTTP/1.1" 200 None +urllib3.connectionpool DEBUG 2024-02-23 13:25:50,801: Starting new HTTP connection (1): localhost:39427 +urllib3.connectionpool DEBUG 2024-02-23 13:25:50,863: http://localhost:39427 "POST /api/histories HTTP/1.1" 200 1000 +urllib3.connectionpool DEBUG 2024-02-23 13:25:50,867: Starting new HTTP connection (1): localhost:39427 +urllib3.connectionpool DEBUG 2024-02-23 13:25:50,876: http://localhost:39427 "GET /api/tools/ncbi_fcs_adaptor/test_data_path?filename=fcsadaptor_prok_test.fa.gz&tool_version=0.5.0+galaxy0 HTTP/1.1" 200 None +urllib3.connectionpool DEBUG 2024-02-23 13:25:50,879: Starting new HTTP connection (1): localhost:39427 +urllib3.connectionpool DEBUG 2024-02-23 13:25:50,884: http://localhost:39427 "GET /api/version HTTP/1.1" 200 49 +urllib3.connectionpool DEBUG 2024-02-23 13:25:50,887: Starting new HTTP connection (1): localhost:39427 +urllib3.connectionpool DEBUG 2024-02-23 13:25:50,909: http://localhost:39427 "GET /api/tools/ncbi_fcs_adaptor/test_data_download?filename=fcsadaptor_prok_test.fa.gz&tool_version=0.5.0+galaxy0 HTTP/1.1" 200 None +urllib3.connectionpool DEBUG 2024-02-23 13:25:50,914: Starting new HTTP connection (1): localhost:39427 +galaxy.jobs DEBUG 2024-02-23 13:25:49,995 [pN:main.1,p:76310,tN:LocalRunner.work_thread-1] finish(): Moved /tmp/tmpu7x63f_i/job_working_directory/000/2/outputs/dataset_1a2ea823-d7e6-495f-a31e-e8d6621f705c.dat to /tmp/tmpu7x63f_i/files/1/a/2/dataset_1a2ea823-d7e6-495f-a31e-e8d6621f705c.dat +galaxy.jobs DEBUG 2024-02-23 13:25:49,995 [pN:main.1,p:76310,tN:LocalRunner.work_thread-1] finish(): Moved /tmp/tmpu7x63f_i/job_working_directory/000/2/outputs/dataset_4e39d590-f2e3-4821-87bc-68df5a7106cb.dat to /tmp/tmpu7x63f_i/files/4/e/3/dataset_4e39d590-f2e3-4821-87bc-68df5a7106cb.dat +galaxy.model.metadata DEBUG 2024-02-23 13:25:50,004 [pN:main.1,p:76310,tN:LocalRunner.work_thread-1] loading metadata from file for: HistoryDatasetAssociation 2 +galaxy.model.metadata DEBUG 2024-02-23 13:25:50,011 [pN:main.1,p:76310,tN:LocalRunner.work_thread-1] loading metadata from file for: HistoryDatasetAssociation 3 +galaxy.jobs DEBUG 2024-02-23 13:25:50,081 [pN:main.1,p:76310,tN:LocalRunner.work_thread-1] job_wrapper.finish for job 2 executed (91.685 ms) +multipart.multipart DEBUG 2024-02-23 13:25:50,805 [pN:main.1,p:76310,tN:MainThread] Calling on_field_start with no data +multipart.multipart DEBUG 2024-02-23 13:25:50,805 [pN:main.1,p:76310,tN:MainThread] Calling on_field_name with data[0:4] +multipart.multipart DEBUG 2024-02-23 13:25:50,805 [pN:main.1,p:76310,tN:MainThread] Calling on_field_data with data[5:63] +multipart.multipart DEBUG 2024-02-23 13:25:50,805 [pN:main.1,p:76310,tN:MainThread] Calling on_field_end with no data +multipart.multipart DEBUG 2024-02-23 13:25:50,805 [pN:main.1,p:76310,tN:MainThread] Calling on_end with no data +galaxy.tools INFO 2024-02-23 13:25:50,949 [pN:main.1,p:76310,tN:WSGI_8] Validated and populated state for tool request (7.807 ms) +galaxy.tools.actions.upload DEBUG 2024-02-23 13:25:50,953 [pN:main.1,p:76310,tN:WSGI_8] Persisted uploads (0.127 ms) + +urllib3.connectionpool DEBUG 2024-02-23 13:25:51,025: http://localhost:39427 "POST /api/tools HTTP/1.1" 200 None +urllib3.connectionpool DEBUG 2024-02-23 13:25:51,029: Starting new HTTP connection (1): localhost:39427 +urllib3.connectionpool DEBUG 2024-02-23 13:25:51,061: http://localhost:39427 "GET /api/jobs/e83007cfd86577e9 HTTP/1.1" 200 1043 +urllib3.connectionpool DEBUG 2024-02-23 13:25:51,315: Starting new HTTP connection (1): localhost:39427 +urllib3.connectionpool DEBUG 2024-02-23 13:25:51,386: http://localhost:39427 "GET /api/jobs/e83007cfd86577e9 HTTP/1.1" 200 1043 +urllib3.connectionpool DEBUG 2024-02-23 13:25:51,640: Starting new HTTP connection (1): localhost:39427 +urllib3.connectionpool DEBUG 2024-02-23 13:25:51,678: http://localhost:39427 "GET /api/jobs/e83007cfd86577e9 HTTP/1.1" 200 1464 +urllib3.connectionpool DEBUG 2024-02-23 13:25:51,932: Starting new HTTP connection (1): localhost:39427 +urllib3.connectionpool DEBUG 2024-02-23 13:25:51,969: http://localhost:39427 "GET /api/jobs/e83007cfd86577e9 HTTP/1.1" 200 1464 +galaxy.tools.actions.upload DEBUG 2024-02-23 13:25:50,994 [pN:main.1,p:76310,tN:WSGI_8] Checked uploads (41.512 ms) +galaxy.tools.actions.upload DEBUG 2024-02-23 13:25:50,996 [pN:main.1,p:76310,tN:WSGI_8] Created upload job (2.119 ms) +galaxy.tools.execute DEBUG 2024-02-23 13:25:50,997 [pN:main.1,p:76310,tN:WSGI_8] Tool upload1 created job None (44.285 ms) +galaxy.web_stack.handlers INFO 2024-02-23 13:25:51,010 [pN:main.1,p:76310,tN:WSGI_8] (Job[id=3,tool_id=upload1]) Handler '_default_' assigned using 'HANDLER_ASSIGNMENT_METHODS.DB_SKIP_LOCKED' assignment method +galaxy.tools.execute DEBUG 2024-02-23 13:25:51,014 [pN:main.1,p:76310,tN:WSGI_8] Created 1 job(s) for tool upload1 request (64.682 ms) +galaxy.jobs.mapper DEBUG 2024-02-23 13:25:51,360 [pN:main.1,p:76310,tN:JobHandlerQueue.monitor_thread] (3) Mapped job to destination id: docker_local +galaxy.jobs.handler DEBUG 2024-02-23 13:25:51,366 [pN:main.1,p:76310,tN:JobHandlerQueue.monitor_thread] (3) Dispatching to local runner +galaxy.jobs DEBUG 2024-02-23 13:25:51,383 [pN:main.1,p:76310,tN:JobHandlerQueue.monitor_thread] (3) Persisting job destination (destination id: docker_local) +galaxy.jobs DEBUG 2024-02-23 13:25:51,393 [pN:main.1,p:76310,tN:JobHandlerQueue.monitor_thread] (3) Working directory for job is: /tmp/tmpu7x63f_i/job_working_directory/000/3 +galaxy.jobs.runners DEBUG 2024-02-23 13:25:51,399 [pN:main.1,p:76310,tN:JobHandlerQueue.monitor_thread] Job [3] queued (32.821 ms) +galaxy.jobs.handler INFO 2024-02-23 13:25:51,420 [pN:main.1,p:76310,tN:JobHandlerQueue.monitor_thread] (3) Job dispatched +galaxy.jobs DEBUG 2024-02-23 13:25:51,459 [pN:main.1,p:76310,tN:LocalRunner.work_thread-3] Job wrapper for Job [3] prepared (38.864 ms) +galaxy.tool_util.deps.containers INFO 2024-02-23 13:25:51,460 [pN:main.1,p:76310,tN:LocalRunner.work_thread-3] Checking with container resolver [ExplicitContainerResolver[]] found description [None] +galaxy.tool_util.deps.containers INFO 2024-02-23 13:25:51,460 [pN:main.1,p:76310,tN:LocalRunner.work_thread-3] Checking with container resolver [CachedMulledDockerContainerResolver[namespace=biocontainers]] found description [None] +galaxy.tool_util.deps.containers INFO 2024-02-23 13:25:51,460 [pN:main.1,p:76310,tN:LocalRunner.work_thread-3] Checking with container resolver [CachedMulledDockerContainerResolver[namespace=local]] found description [None] +galaxy.tool_util.deps.containers INFO 2024-02-23 13:25:51,460 [pN:main.1,p:76310,tN:LocalRunner.work_thread-3] Checking with container resolver [MulledDockerContainerResolver[namespace=biocontainers]] found description [None] +galaxy.tool_util.deps.containers INFO 2024-02-23 13:25:51,460 [pN:main.1,p:76310,tN:LocalRunner.work_thread-3] Checking with container resolver [BuildDockerContainerResolver[namespace=local]] found description [None] +galaxy.jobs.command_factory INFO 2024-02-23 13:25:51,486 [pN:main.1,p:76310,tN:LocalRunner.work_thread-3] Built script [/tmp/tmpu7x63f_i/job_working_directory/000/3/tool_script.sh] for tool command [python '/scratch/rico/galaxy/tools/data_source/upload.py' '/scratch/rico/galaxy' '/tmp/tmpu7x63f_i/job_working_directory/000/3/registry.xml' '/tmp/tmpu7x63f_i/job_working_directory/000/3/upload_params.json' '4:/tmp/tmpu7x63f_i/job_working_directory/000/3/outputs/dataset_96bb2ac5-08a0-48d7-9de5-79affb15526d_files:/tmp/tmpu7x63f_i/job_working_directory/000/3/outputs/dataset_96bb2ac5-08a0-48d7-9de5-79affb15526d.dat'] +galaxy.jobs.runners DEBUG 2024-02-23 13:25:51,512 [pN:main.1,p:76310,tN:LocalRunner.work_thread-3] (3) command is: mkdir -p working outputs configs +if [ -d _working ]; then + rm -rf working/ outputs/ configs/; cp -R _working working; cp -R _outputs outputs; cp -R _configs configs +else + cp -R working _working; cp -R outputs _outputs; cp -R configs _configs +fi +cd working; /bin/bash /tmp/tmpu7x63f_i/job_working_directory/000/3/tool_script.sh > '../outputs/tool_stdout' 2> '../outputs/tool_stderr'; return_code=$?; echo $return_code > /tmp/tmpu7x63f_i/job_working_directory/000/3/galaxy_3.ec; cd '/tmp/tmpu7x63f_i/job_working_directory/000/3'; +[ "$GALAXY_VIRTUAL_ENV" = "None" ] && GALAXY_VIRTUAL_ENV="$_GALAXY_VIRTUAL_ENV"; _galaxy_setup_environment True; python metadata/set.py; sh -c "exit $return_code" +galaxy.jobs.runners.local DEBUG 2024-02-23 13:25:51,533 [pN:main.1,p:76310,tN:LocalRunner.work_thread-3] (3) executing job script: /tmp/tmpu7x63f_i/job_working_directory/000/3/galaxy_3.sh + +urllib3.connectionpool DEBUG 2024-02-23 13:25:52,222: Starting new HTTP connection (1): localhost:39427 +urllib3.connectionpool DEBUG 2024-02-23 13:25:52,249: http://localhost:39427 "GET /api/jobs/e83007cfd86577e9 HTTP/1.1" 200 1464 +urllib3.connectionpool DEBUG 2024-02-23 13:25:52,503: Starting new HTTP connection (1): localhost:39427 +urllib3.connectionpool DEBUG 2024-02-23 13:25:52,540: http://localhost:39427 "GET /api/jobs/e83007cfd86577e9 HTTP/1.1" 200 1464 +urllib3.connectionpool DEBUG 2024-02-23 13:25:52,794: Starting new HTTP connection (1): localhost:39427 +urllib3.connectionpool DEBUG 2024-02-23 13:25:52,828: http://localhost:39427 "GET /api/jobs/e83007cfd86577e9 HTTP/1.1" 200 1464 +urllib3.connectionpool DEBUG 2024-02-23 13:25:53,083: Starting new HTTP connection (1): localhost:39427 +urllib3.connectionpool DEBUG 2024-02-23 13:25:53,114: http://localhost:39427 "GET /api/jobs/e83007cfd86577e9 HTTP/1.1" 200 1464 +urllib3.connectionpool DEBUG 2024-02-23 13:25:53,368: Starting new HTTP connection (1): localhost:39427 +urllib3.connectionpool DEBUG 2024-02-23 13:25:53,403: http://localhost:39427 "GET /api/jobs/e83007cfd86577e9 HTTP/1.1" 200 1464 +urllib3.connectionpool DEBUG 2024-02-23 13:25:53,657: Starting new HTTP connection (1): localhost:39427 +urllib3.connectionpool DEBUG 2024-02-23 13:25:53,688: http://localhost:39427 "GET /api/jobs/e83007cfd86577e9 HTTP/1.1" 200 1464 +urllib3.connectionpool DEBUG 2024-02-23 13:25:53,942: Starting new HTTP connection (1): localhost:39427 +urllib3.connectionpool DEBUG 2024-02-23 13:25:53,965: http://localhost:39427 "GET /api/jobs/e83007cfd86577e9 HTTP/1.1" 200 1464 +urllib3.connectionpool DEBUG 2024-02-23 13:25:54,219: Starting new HTTP connection (1): localhost:39427 +urllib3.connectionpool DEBUG 2024-02-23 13:25:54,242: http://localhost:39427 "GET /api/jobs/e83007cfd86577e9 HTTP/1.1" 200 1464 +urllib3.connectionpool DEBUG 2024-02-23 13:25:54,496: Starting new HTTP connection (1): localhost:39427 +urllib3.connectionpool DEBUG 2024-02-23 13:25:54,525: http://localhost:39427 "GET /api/jobs/e83007cfd86577e9 HTTP/1.1" 200 1464 +urllib3.connectionpool DEBUG 2024-02-23 13:25:54,779: Starting new HTTP connection (1): localhost:39427 +urllib3.connectionpool DEBUG 2024-02-23 13:25:54,811: http://localhost:39427 "GET /api/jobs/e83007cfd86577e9 HTTP/1.1" 200 1464 +urllib3.connectionpool DEBUG 2024-02-23 13:25:55,064: Starting new HTTP connection (1): localhost:39427 +urllib3.connectionpool DEBUG 2024-02-23 13:25:55,087: http://localhost:39427 "GET /api/jobs/e83007cfd86577e9 HTTP/1.1" 200 1464 +urllib3.connectionpool DEBUG 2024-02-23 13:25:55,341: Starting new HTTP connection (1): localhost:39427 +urllib3.connectionpool DEBUG 2024-02-23 13:25:55,372: http://localhost:39427 "GET /api/jobs/e83007cfd86577e9 HTTP/1.1" 200 1464 +urllib3.connectionpool DEBUG 2024-02-23 13:25:55,626: Starting new HTTP connection (1): localhost:39427 +urllib3.connectionpool DEBUG 2024-02-23 13:25:55,661: http://localhost:39427 "GET /api/jobs/e83007cfd86577e9 HTTP/1.1" 200 1464 +urllib3.connectionpool DEBUG 2024-02-23 13:25:55,915: Starting new HTTP connection (1): localhost:39427 +urllib3.connectionpool DEBUG 2024-02-23 13:25:55,940: http://localhost:39427 "GET /api/jobs/e83007cfd86577e9 HTTP/1.1" 200 1464 +urllib3.connectionpool DEBUG 2024-02-23 13:25:56,194: Starting new HTTP connection (1): localhost:39427 +urllib3.connectionpool DEBUG 2024-02-23 13:25:56,217: http://localhost:39427 "GET /api/jobs/e83007cfd86577e9 HTTP/1.1" 200 1464 +urllib3.connectionpool DEBUG 2024-02-23 13:25:56,470: Starting new HTTP connection (1): localhost:39427 +urllib3.connectionpool DEBUG 2024-02-23 13:25:56,494: http://localhost:39427 "GET /api/jobs/e83007cfd86577e9 HTTP/1.1" 200 1464 +urllib3.connectionpool DEBUG 2024-02-23 13:25:56,748: Starting new HTTP connection (1): localhost:39427 +urllib3.connectionpool DEBUG 2024-02-23 13:25:56,782: http://localhost:39427 "GET /api/jobs/e83007cfd86577e9 HTTP/1.1" 200 1464 +urllib3.connectionpool DEBUG 2024-02-23 13:25:57,036: Starting new HTTP connection (1): localhost:39427 +urllib3.connectionpool DEBUG 2024-02-23 13:25:57,059: http://localhost:39427 "GET /api/jobs/e83007cfd86577e9 HTTP/1.1" 200 1464 +urllib3.connectionpool DEBUG 2024-02-23 13:25:57,314: Starting new HTTP connection (1): localhost:39427 +urllib3.connectionpool DEBUG 2024-02-23 13:25:57,338: http://localhost:39427 "GET /api/jobs/e83007cfd86577e9 HTTP/1.1" 200 1464 +urllib3.connectionpool DEBUG 2024-02-23 13:25:57,592: Starting new HTTP connection (1): localhost:39427 +urllib3.connectionpool DEBUG 2024-02-23 13:25:57,615: http://localhost:39427 "GET /api/jobs/e83007cfd86577e9 HTTP/1.1" 200 1464 +urllib3.connectionpool DEBUG 2024-02-23 13:25:57,869: Starting new HTTP connection (1): localhost:39427 +urllib3.connectionpool DEBUG 2024-02-23 13:25:57,895: http://localhost:39427 "GET /api/jobs/e83007cfd86577e9 HTTP/1.1" 200 1454 +urllib3.connectionpool DEBUG 2024-02-23 13:25:57,899: Starting new HTTP connection (1): localhost:39427 +galaxy.jobs.runners.util.process_groups DEBUG 2024-02-23 13:25:57,636 [pN:main.1,p:76310,tN:LocalRunner.work_thread-3] check_pg(): No process found in process group 76848 +galaxy.jobs.runners.local DEBUG 2024-02-23 13:25:57,638 [pN:main.1,p:76310,tN:LocalRunner.work_thread-3] execution finished: /tmp/tmpu7x63f_i/job_working_directory/000/3/galaxy_3.sh +galaxy.jobs DEBUG 2024-02-23 13:25:57,660 [pN:main.1,p:76310,tN:LocalRunner.work_thread-3] finish(): Moved /tmp/tmpu7x63f_i/job_working_directory/000/3/outputs/dataset_96bb2ac5-08a0-48d7-9de5-79affb15526d.dat to /tmp/tmpu7x63f_i/files/9/6/b/dataset_96bb2ac5-08a0-48d7-9de5-79affb15526d.dat +galaxy.model.metadata DEBUG 2024-02-23 13:25:57,668 [pN:main.1,p:76310,tN:LocalRunner.work_thread-3] loading metadata from file for: HistoryDatasetAssociation 4 +galaxy.jobs DEBUG 2024-02-23 13:25:57,695 [pN:main.1,p:76310,tN:LocalRunner.work_thread-3] job_wrapper.finish for job 3 executed (41.217 ms) +galaxy.tools INFO 2024-02-23 13:25:57,927 [pN:main.1,p:76310,tN:WSGI_5] Validated and populated state for tool request (4.567 ms) +galaxy.tools.actions INFO 2024-02-23 13:25:57,932 [pN:main.1,p:76310,tN:WSGI_5] Handled output named adaptor_report for tool ncbi_fcs_adaptor (1.226 ms) +galaxy.tools.actions INFO 2024-02-23 13:25:57,933 [pN:main.1,p:76310,tN:WSGI_5] Handled output named clean_fasta for tool ncbi_fcs_adaptor (0.730 ms) +galaxy.tools.actions DEBUG 2024-02-23 13:25:57,933 [pN:main.1,p:76310,tN:WSGI_5] Tool ncbi_fcs_adaptor output adaptor_log: dataset output filter (advanced['optional_log'] is not None and 'adaptor_log' in advanced['optional_log'].split(',')) failed: 'list' object has no attribute 'split' +galaxy.tools.actions INFO 2024-02-23 13:25:57,936 [pN:main.1,p:76310,tN:WSGI_5] Handled output named adaptor_log for tool ncbi_fcs_adaptor (3.053 ms) +galaxy.tools.actions DEBUG 2024-02-23 13:25:57,936 [pN:main.1,p:76310,tN:WSGI_5] Tool ncbi_fcs_adaptor output validate_fasta_log: dataset output filter (advanced['optional_log'] is not None and 'validate_fasta_log' in advanced['optional_log'].split(',')) failed: 'list' object has no attribute 'split' +galaxy.tools.actions INFO 2024-02-23 13:25:57,939 [pN:main.1,p:76310,tN:WSGI_5] Handled output named validate_fasta_log for tool ncbi_fcs_adaptor (2.494 ms) +galaxy.tools.actions INFO 2024-02-23 13:25:57,947 [pN:main.1,p:76310,tN:WSGI_5] Added output datasets to history (7.846 ms) +galaxy.tools.actions INFO 2024-02-23 13:25:57,950 [pN:main.1,p:76310,tN:WSGI_5] Setup for job Job[unflushed,tool_id=ncbi_fcs_adaptor] complete, ready to be enqueued (2.292 ms) +galaxy.tools.execute DEBUG 2024-02-23 13:25:57,950 [pN:main.1,p:76310,tN:WSGI_5] Tool ncbi_fcs_adaptor created job None (20.728 ms) +galaxy.web_stack.handlers INFO 2024-02-23 13:25:57,971 [pN:main.1,p:76310,tN:WSGI_5] (Job[id=4,tool_id=ncbi_fcs_adaptor]) Handler '_default_' assigned using 'HANDLER_ASSIGNMENT_METHODS.DB_SKIP_LOCKED' assignment method +galaxy.tools.execute DEBUG 2024-02-23 13:25:57,975 [pN:main.1,p:76310,tN:WSGI_5] Created 1 job(s) for tool ncbi_fcs_adaptor request (47.336 ms) + +urllib3.connectionpool DEBUG 2024-02-23 13:25:57,994: http://localhost:39427 "POST /api/tools HTTP/1.1" 200 None +urllib3.connectionpool DEBUG 2024-02-23 13:25:58,000: Starting new HTTP connection (1): localhost:39427 +urllib3.connectionpool DEBUG 2024-02-23 13:25:58,029: http://localhost:39427 "GET /api/jobs/92ca5dfeb6970722 HTTP/1.1" 200 1113 +urllib3.connectionpool DEBUG 2024-02-23 13:25:58,283: Starting new HTTP connection (1): localhost:39427 +urllib3.connectionpool DEBUG 2024-02-23 13:25:58,320: http://localhost:39427 "GET /api/jobs/92ca5dfeb6970722 HTTP/1.1" 200 1113 +urllib3.connectionpool DEBUG 2024-02-23 13:25:58,574: Starting new HTTP connection (1): localhost:39427 +urllib3.connectionpool DEBUG 2024-02-23 13:25:58,650: http://localhost:39427 "GET /api/jobs/92ca5dfeb6970722 HTTP/1.1" 200 1113 +urllib3.connectionpool DEBUG 2024-02-23 13:25:58,905: Starting new HTTP connection (1): localhost:39427 +urllib3.connectionpool DEBUG 2024-02-23 13:25:58,942: http://localhost:39427 "GET /api/jobs/92ca5dfeb6970722 HTTP/1.1" 200 1245 +galaxy.jobs.mapper DEBUG 2024-02-23 13:25:58,624 [pN:main.1,p:76310,tN:JobHandlerQueue.monitor_thread] (4) Mapped job to destination id: docker_local +galaxy.jobs.handler DEBUG 2024-02-23 13:25:58,630 [pN:main.1,p:76310,tN:JobHandlerQueue.monitor_thread] (4) Dispatching to local runner +galaxy.jobs DEBUG 2024-02-23 13:25:58,647 [pN:main.1,p:76310,tN:JobHandlerQueue.monitor_thread] (4) Persisting job destination (destination id: docker_local) +galaxy.jobs DEBUG 2024-02-23 13:25:58,659 [pN:main.1,p:76310,tN:JobHandlerQueue.monitor_thread] (4) Working directory for job is: /tmp/tmpu7x63f_i/job_working_directory/000/4 +galaxy.jobs.runners DEBUG 2024-02-23 13:25:58,666 [pN:main.1,p:76310,tN:JobHandlerQueue.monitor_thread] Job [4] queued (36.198 ms) +galaxy.jobs.handler INFO 2024-02-23 13:25:58,679 [pN:main.1,p:76310,tN:JobHandlerQueue.monitor_thread] (4) Job dispatched +galaxy.jobs DEBUG 2024-02-23 13:25:58,748 [pN:main.1,p:76310,tN:LocalRunner.work_thread-3] Job wrapper for Job [4] prepared (53.521 ms) +galaxy.tool_util.deps.containers INFO 2024-02-23 13:25:58,749 [pN:main.1,p:76310,tN:LocalRunner.work_thread-3] Checking with container resolver [ExplicitContainerResolver[]] found description [ContainerDescription[identifier=ncbi/fcs-adaptor:0.5.0,type=docker]] +galaxy.jobs.command_factory INFO 2024-02-23 13:25:58,784 [pN:main.1,p:76310,tN:LocalRunner.work_thread-3] Built script [/tmp/tmpu7x63f_i/job_working_directory/000/4/tool_script.sh] for tool command [/app/fcs/bin/av_screen_x -o "$(pwd)" '--prok' '/tmp/tmpu7x63f_i/files/9/6/b/dataset_96bb2ac5-08a0-48d7-9de5-79affb15526d.dat'] +galaxy.jobs.runners DEBUG 2024-02-23 13:25:58,828 [pN:main.1,p:76310,tN:LocalRunner.work_thread-3] (4) command is: mkdir -p working outputs configs +if [ -d _working ]; then + rm -rf working/ outputs/ configs/; cp -R _working working; cp -R _outputs outputs; cp -R _configs configs +else + cp -R working _working; cp -R outputs _outputs; cp -R configs _configs +fi +cd working; +_on_exit() { + docker kill 44f5466e5ac0453c8dfe234c278e5cf8 &> /dev/null +} +trap _on_exit EXIT +docker inspect ncbi/fcs-adaptor:0.5.0 > /dev/null 2>&1 +[ $? -ne 0 ] && docker pull ncbi/fcs-adaptor:0.5.0 > /dev/null 2>&1 + +docker run -e "GALAXY_SLOTS=$GALAXY_SLOTS" -e "GALAXY_MEMORY_MB=$GALAXY_MEMORY_MB" -e "GALAXY_MEMORY_MB_PER_SLOT=$GALAXY_MEMORY_MB_PER_SLOT" -e "HOME=$HOME" -e "_GALAXY_JOB_HOME_DIR=$_GALAXY_JOB_HOME_DIR" -e "_GALAXY_JOB_TMP_DIR=$_GALAXY_JOB_TMP_DIR" -e "TMPDIR=$TMPDIR" -e "TMP=$TMP" -e "TEMP=$TEMP" --name 44f5466e5ac0453c8dfe234c278e5cf8 -v "$_GALAXY_JOB_TMP_DIR:$_GALAXY_JOB_TMP_DIR:rw" -v "$TMPDIR:$TMPDIR:rw" -v "$TMP:$TMP:rw" -v "$TEMP:$TEMP:rw" -v /scratch/rico/galaxy:/scratch/rico/galaxy:ro -v /scratch/rico/galaxytools/tools/ncbi_fcs_adaptor:/scratch/rico/galaxytools/tools/ncbi_fcs_adaptor:ro -v /tmp/tmpu7x63f_i/job_working_directory/000/4:/tmp/tmpu7x63f_i/job_working_directory/000/4:ro -v /tmp/tmpu7x63f_i/job_working_directory/000/4/outputs:/tmp/tmpu7x63f_i/job_working_directory/000/4/outputs:rw -v "$_GALAXY_JOB_HOME_DIR:$_GALAXY_JOB_HOME_DIR:rw" -v /tmp/tmpu7x63f_i/job_working_directory/000/4/working:/tmp/tmpu7x63f_i/job_working_directory/000/4/working:rw -v /tmp/tmpu7x63f_i/files:/tmp/tmpu7x63f_i/files:ro -v /scratch/rico/galaxy/tool-data:/scratch/rico/galaxy/tool-data:ro --cpus ${GALAXY_SLOTS:-1} -w /tmp/tmpu7x63f_i/job_working_directory/000/4/working --rm --user 1028:1028 ncbi/fcs-adaptor:0.5.0 /bin/sh /tmp/tmpu7x63f_i/job_working_directory/000/4/tool_script.sh > '../outputs/tool_stdout' 2> '../outputs/tool_stderr'; return_code=$?; echo $return_code > /tmp/tmpu7x63f_i/job_working_directory/000/4/galaxy_4.ec; +if [ -f "/tmp/tmpu7x63f_i/job_working_directory/000/4/working/fcs_adaptor_report.txt" ] ; then cp "/tmp/tmpu7x63f_i/job_working_directory/000/4/working/fcs_adaptor_report.txt" "/tmp/tmpu7x63f_i/job_working_directory/000/4/outputs/dataset_5bd87a72-fbff-4e4a-a27a-aa9a07b645ae.dat" ; fi; +if [ -f "/tmp/tmpu7x63f_i/job_working_directory/000/4/working/cleaned_sequences/"*".dat" ] ; then cp "/tmp/tmpu7x63f_i/job_working_directory/000/4/working/cleaned_sequences/"*".dat" "/tmp/tmpu7x63f_i/job_working_directory/000/4/outputs/dataset_2556b660-7d40-4c96-ae9b-4e54b5c33132.dat" ; fi; +if [ -f "/tmp/tmpu7x63f_i/job_working_directory/000/4/working/fcs_adaptor.log" ] ; then cp "/tmp/tmpu7x63f_i/job_working_directory/000/4/working/fcs_adaptor.log" "/tmp/tmpu7x63f_i/job_working_directory/000/4/outputs/dataset_8294ec1f-feb6-4427-822b-0d653c89d82d.dat" ; fi; +if [ -f "/tmp/tmpu7x63f_i/job_working_directory/000/4/working/validate_fasta.txt" ] ; then cp "/tmp/tmpu7x63f_i/job_working_directory/000/4/working/validate_fasta.txt" "/tmp/tmpu7x63f_i/job_working_directory/000/4/outputs/dataset_664ec871-210e-4cf1-867e-c67d8419c064.dat" ; fi; cd '/tmp/tmpu7x63f_i/job_working_directory/000/4'; +[ "$GALAXY_VIRTUAL_ENV" = "None" ] && GALAXY_VIRTUAL_ENV="$_GALAXY_VIRTUAL_ENV"; _galaxy_setup_environment True; python metadata/set.py; sh -c "exit $return_code" +galaxy.jobs.runners.local DEBUG 2024-02-23 13:25:58,850 [pN:main.1,p:76310,tN:LocalRunner.work_thread-3] (4) executing job script: /tmp/tmpu7x63f_i/job_working_directory/000/4/galaxy_4.sh + +urllib3.connectionpool DEBUG 2024-02-23 13:25:59,197: Starting new HTTP connection (1): localhost:39427 +urllib3.connectionpool DEBUG 2024-02-23 13:25:59,228: http://localhost:39427 "GET /api/jobs/92ca5dfeb6970722 HTTP/1.1" 200 1245 +urllib3.connectionpool DEBUG 2024-02-23 13:25:59,482: Starting new HTTP connection (1): localhost:39427 +urllib3.connectionpool DEBUG 2024-02-23 13:25:59,516: http://localhost:39427 "GET /api/jobs/92ca5dfeb6970722 HTTP/1.1" 200 1245 +urllib3.connectionpool DEBUG 2024-02-23 13:25:59,770: Starting new HTTP connection (1): localhost:39427 +urllib3.connectionpool DEBUG 2024-02-23 13:25:59,800: http://localhost:39427 "GET /api/jobs/92ca5dfeb6970722 HTTP/1.1" 200 1245 +urllib3.connectionpool DEBUG 2024-02-23 13:26:00,054: Starting new HTTP connection (1): localhost:39427 +urllib3.connectionpool DEBUG 2024-02-23 13:26:00,087: http://localhost:39427 "GET /api/jobs/92ca5dfeb6970722 HTTP/1.1" 200 1245 +urllib3.connectionpool DEBUG 2024-02-23 13:26:00,341: Starting new HTTP connection (1): localhost:39427 +urllib3.connectionpool DEBUG 2024-02-23 13:26:00,370: http://localhost:39427 "GET /api/jobs/92ca5dfeb6970722 HTTP/1.1" 200 1245 +urllib3.connectionpool DEBUG 2024-02-23 13:26:00,624: Starting new HTTP connection (1): localhost:39427 +urllib3.connectionpool DEBUG 2024-02-23 13:26:00,651: http://localhost:39427 "GET /api/jobs/92ca5dfeb6970722 HTTP/1.1" 200 1245 +urllib3.connectionpool DEBUG 2024-02-23 13:26:00,905: Starting new HTTP connection (1): localhost:39427 +urllib3.connectionpool DEBUG 2024-02-23 13:26:00,931: http://localhost:39427 "GET /api/jobs/92ca5dfeb6970722 HTTP/1.1" 200 1245 +urllib3.connectionpool DEBUG 2024-02-23 13:26:01,185: Starting new HTTP connection (1): localhost:39427 +urllib3.connectionpool DEBUG 2024-02-23 13:26:01,217: http://localhost:39427 "GET /api/jobs/92ca5dfeb6970722 HTTP/1.1" 200 1245 +urllib3.connectionpool DEBUG 2024-02-23 13:26:01,471: Starting new HTTP connection (1): localhost:39427 +urllib3.connectionpool DEBUG 2024-02-23 13:26:01,501: http://localhost:39427 "GET /api/jobs/92ca5dfeb6970722 HTTP/1.1" 200 1245 +urllib3.connectionpool DEBUG 2024-02-23 13:26:01,754: Starting new HTTP connection (1): localhost:39427 +urllib3.connectionpool DEBUG 2024-02-23 13:26:01,782: http://localhost:39427 "GET /api/jobs/92ca5dfeb6970722 HTTP/1.1" 200 1245 +urllib3.connectionpool DEBUG 2024-02-23 13:26:02,036: Starting new HTTP connection (1): localhost:39427 +urllib3.connectionpool DEBUG 2024-02-23 13:26:02,062: http://localhost:39427 "GET /api/jobs/92ca5dfeb6970722 HTTP/1.1" 200 1245 +urllib3.connectionpool DEBUG 2024-02-23 13:26:02,316: Starting new HTTP connection (1): localhost:39427 +urllib3.connectionpool DEBUG 2024-02-23 13:26:02,342: http://localhost:39427 "GET /api/jobs/92ca5dfeb6970722 HTTP/1.1" 200 1245 +urllib3.connectionpool DEBUG 2024-02-23 13:26:02,595: Starting new HTTP connection (1): localhost:39427 +urllib3.connectionpool DEBUG 2024-02-23 13:26:02,628: http://localhost:39427 "GET /api/jobs/92ca5dfeb6970722 HTTP/1.1" 200 1245 +urllib3.connectionpool DEBUG 2024-02-23 13:26:02,882: Starting new HTTP connection (1): localhost:39427 +urllib3.connectionpool DEBUG 2024-02-23 13:26:02,907: http://localhost:39427 "GET /api/jobs/92ca5dfeb6970722 HTTP/1.1" 200 1245 +urllib3.connectionpool DEBUG 2024-02-23 13:26:03,161: Starting new HTTP connection (1): localhost:39427 +urllib3.connectionpool DEBUG 2024-02-23 13:26:03,188: http://localhost:39427 "GET /api/jobs/92ca5dfeb6970722 HTTP/1.1" 200 1245 +urllib3.connectionpool DEBUG 2024-02-23 13:26:03,441: Starting new HTTP connection (1): localhost:39427 +urllib3.connectionpool DEBUG 2024-02-23 13:26:03,473: http://localhost:39427 "GET /api/jobs/92ca5dfeb6970722 HTTP/1.1" 200 1245 +urllib3.connectionpool DEBUG 2024-02-23 13:26:03,727: Starting new HTTP connection (1): localhost:39427 +urllib3.connectionpool DEBUG 2024-02-23 13:26:03,759: http://localhost:39427 "GET /api/jobs/92ca5dfeb6970722 HTTP/1.1" 200 1245 +urllib3.connectionpool DEBUG 2024-02-23 13:26:04,013: Starting new HTTP connection (1): localhost:39427 +urllib3.connectionpool DEBUG 2024-02-23 13:26:04,040: http://localhost:39427 "GET /api/jobs/92ca5dfeb6970722 HTTP/1.1" 200 1245 +urllib3.connectionpool DEBUG 2024-02-23 13:26:04,294: Starting new HTTP connection (1): localhost:39427 +urllib3.connectionpool DEBUG 2024-02-23 13:26:04,320: http://localhost:39427 "GET /api/jobs/92ca5dfeb6970722 HTTP/1.1" 200 1245 +urllib3.connectionpool DEBUG 2024-02-23 13:26:04,574: Starting new HTTP connection (1): localhost:39427 +urllib3.connectionpool DEBUG 2024-02-23 13:26:04,601: http://localhost:39427 "GET /api/jobs/92ca5dfeb6970722 HTTP/1.1" 200 1245 +urllib3.connectionpool DEBUG 2024-02-23 13:26:04,855: Starting new HTTP connection (1): localhost:39427 +urllib3.connectionpool DEBUG 2024-02-23 13:26:04,883: http://localhost:39427 "GET /api/jobs/92ca5dfeb6970722 HTTP/1.1" 200 1245 +urllib3.connectionpool DEBUG 2024-02-23 13:26:05,137: Starting new HTTP connection (1): localhost:39427 +urllib3.connectionpool DEBUG 2024-02-23 13:26:05,164: http://localhost:39427 "GET /api/jobs/92ca5dfeb6970722 HTTP/1.1" 200 1245 +urllib3.connectionpool DEBUG 2024-02-23 13:26:05,418: Starting new HTTP connection (1): localhost:39427 +urllib3.connectionpool DEBUG 2024-02-23 13:26:05,445: http://localhost:39427 "GET /api/jobs/92ca5dfeb6970722 HTTP/1.1" 200 1245 +urllib3.connectionpool DEBUG 2024-02-23 13:26:05,699: Starting new HTTP connection (1): localhost:39427 +urllib3.connectionpool DEBUG 2024-02-23 13:26:05,727: http://localhost:39427 "GET /api/jobs/92ca5dfeb6970722 HTTP/1.1" 200 1245 +urllib3.connectionpool DEBUG 2024-02-23 13:26:05,980: Starting new HTTP connection (1): localhost:39427 +urllib3.connectionpool DEBUG 2024-02-23 13:26:06,007: http://localhost:39427 "GET /api/jobs/92ca5dfeb6970722 HTTP/1.1" 200 1245 +urllib3.connectionpool DEBUG 2024-02-23 13:26:06,261: Starting new HTTP connection (1): localhost:39427 +urllib3.connectionpool DEBUG 2024-02-23 13:26:06,287: http://localhost:39427 "GET /api/jobs/92ca5dfeb6970722 HTTP/1.1" 200 1245 +urllib3.connectionpool DEBUG 2024-02-23 13:26:06,540: Starting new HTTP connection (1): localhost:39427 +urllib3.connectionpool DEBUG 2024-02-23 13:26:06,568: http://localhost:39427 "GET /api/jobs/92ca5dfeb6970722 HTTP/1.1" 200 1245 +urllib3.connectionpool DEBUG 2024-02-23 13:26:06,822: Starting new HTTP connection (1): localhost:39427 +urllib3.connectionpool DEBUG 2024-02-23 13:26:06,864: http://localhost:39427 "GET /api/jobs/92ca5dfeb6970722 HTTP/1.1" 200 1245 +urllib3.connectionpool DEBUG 2024-02-23 13:26:07,118: Starting new HTTP connection (1): localhost:39427 +urllib3.connectionpool DEBUG 2024-02-23 13:26:07,147: http://localhost:39427 "GET /api/jobs/92ca5dfeb6970722 HTTP/1.1" 200 1245 +urllib3.connectionpool DEBUG 2024-02-23 13:26:07,401: Starting new HTTP connection (1): localhost:39427 +urllib3.connectionpool DEBUG 2024-02-23 13:26:07,428: http://localhost:39427 "GET /api/jobs/92ca5dfeb6970722 HTTP/1.1" 200 1245 +urllib3.connectionpool DEBUG 2024-02-23 13:26:07,681: Starting new HTTP connection (1): localhost:39427 +urllib3.connectionpool DEBUG 2024-02-23 13:26:07,707: http://localhost:39427 "GET /api/jobs/92ca5dfeb6970722 HTTP/1.1" 200 1245 +urllib3.connectionpool DEBUG 2024-02-23 13:26:07,960: Starting new HTTP connection (1): localhost:39427 +urllib3.connectionpool DEBUG 2024-02-23 13:26:07,988: http://localhost:39427 "GET /api/jobs/92ca5dfeb6970722 HTTP/1.1" 200 1245 +urllib3.connectionpool DEBUG 2024-02-23 13:26:08,242: Starting new HTTP connection (1): localhost:39427 +urllib3.connectionpool DEBUG 2024-02-23 13:26:08,269: http://localhost:39427 "GET /api/jobs/92ca5dfeb6970722 HTTP/1.1" 200 1245 +urllib3.connectionpool DEBUG 2024-02-23 13:26:08,523: Starting new HTTP connection (1): localhost:39427 +urllib3.connectionpool DEBUG 2024-02-23 13:26:08,551: http://localhost:39427 "GET /api/jobs/92ca5dfeb6970722 HTTP/1.1" 200 1245 +urllib3.connectionpool DEBUG 2024-02-23 13:26:08,805: Starting new HTTP connection (1): localhost:39427 +urllib3.connectionpool DEBUG 2024-02-23 13:26:08,836: http://localhost:39427 "GET /api/jobs/92ca5dfeb6970722 HTTP/1.1" 200 1245 +urllib3.connectionpool DEBUG 2024-02-23 13:26:09,090: Starting new HTTP connection (1): localhost:39427 +urllib3.connectionpool DEBUG 2024-02-23 13:26:09,115: http://localhost:39427 "GET /api/jobs/92ca5dfeb6970722 HTTP/1.1" 200 1245 +urllib3.connectionpool DEBUG 2024-02-23 13:26:09,369: Starting new HTTP connection (1): localhost:39427 +urllib3.connectionpool DEBUG 2024-02-23 13:26:09,395: http://localhost:39427 "GET /api/jobs/92ca5dfeb6970722 HTTP/1.1" 200 1245 +urllib3.connectionpool DEBUG 2024-02-23 13:26:09,649: Starting new HTTP connection (1): localhost:39427 +urllib3.connectionpool DEBUG 2024-02-23 13:26:09,691: http://localhost:39427 "GET /api/jobs/92ca5dfeb6970722 HTTP/1.1" 200 1245 +urllib3.connectionpool DEBUG 2024-02-23 13:26:09,945: Starting new HTTP connection (1): localhost:39427 +urllib3.connectionpool DEBUG 2024-02-23 13:26:09,972: http://localhost:39427 "GET /api/jobs/92ca5dfeb6970722 HTTP/1.1" 200 1245 +urllib3.connectionpool DEBUG 2024-02-23 13:26:10,225: Starting new HTTP connection (1): localhost:39427 +urllib3.connectionpool DEBUG 2024-02-23 13:26:10,252: http://localhost:39427 "GET /api/jobs/92ca5dfeb6970722 HTTP/1.1" 200 1245 +urllib3.connectionpool DEBUG 2024-02-23 13:26:10,506: Starting new HTTP connection (1): localhost:39427 +urllib3.connectionpool DEBUG 2024-02-23 13:26:10,541: http://localhost:39427 "GET /api/jobs/92ca5dfeb6970722 HTTP/1.1" 200 1245 +urllib3.connectionpool DEBUG 2024-02-23 13:26:10,795: Starting new HTTP connection (1): localhost:39427 +urllib3.connectionpool DEBUG 2024-02-23 13:26:10,824: http://localhost:39427 "GET /api/jobs/92ca5dfeb6970722 HTTP/1.1" 200 1245 +urllib3.connectionpool DEBUG 2024-02-23 13:26:11,077: Starting new HTTP connection (1): localhost:39427 +urllib3.connectionpool DEBUG 2024-02-23 13:26:11,103: http://localhost:39427 "GET /api/jobs/92ca5dfeb6970722 HTTP/1.1" 200 1245 +urllib3.connectionpool DEBUG 2024-02-23 13:26:11,357: Starting new HTTP connection (1): localhost:39427 +urllib3.connectionpool DEBUG 2024-02-23 13:26:11,384: http://localhost:39427 "GET /api/jobs/92ca5dfeb6970722 HTTP/1.1" 200 1245 +urllib3.connectionpool DEBUG 2024-02-23 13:26:11,638: Starting new HTTP connection (1): localhost:39427 +urllib3.connectionpool DEBUG 2024-02-23 13:26:11,666: http://localhost:39427 "GET /api/jobs/92ca5dfeb6970722 HTTP/1.1" 200 1245 +urllib3.connectionpool DEBUG 2024-02-23 13:26:11,919: Starting new HTTP connection (1): localhost:39427 +urllib3.connectionpool DEBUG 2024-02-23 13:26:11,947: http://localhost:39427 "GET /api/jobs/92ca5dfeb6970722 HTTP/1.1" 200 1245 +urllib3.connectionpool DEBUG 2024-02-23 13:26:12,201: Starting new HTTP connection (1): localhost:39427 +urllib3.connectionpool DEBUG 2024-02-23 13:26:12,228: http://localhost:39427 "GET /api/jobs/92ca5dfeb6970722 HTTP/1.1" 200 1245 +urllib3.connectionpool DEBUG 2024-02-23 13:26:12,482: Starting new HTTP connection (1): localhost:39427 +urllib3.connectionpool DEBUG 2024-02-23 13:26:12,510: http://localhost:39427 "GET /api/jobs/92ca5dfeb6970722 HTTP/1.1" 200 1245 +urllib3.connectionpool DEBUG 2024-02-23 13:26:12,763: Starting new HTTP connection (1): localhost:39427 +urllib3.connectionpool DEBUG 2024-02-23 13:26:12,802: http://localhost:39427 "GET /api/jobs/92ca5dfeb6970722 HTTP/1.1" 200 1245 +urllib3.connectionpool DEBUG 2024-02-23 13:26:13,056: Starting new HTTP connection (1): localhost:39427 +urllib3.connectionpool DEBUG 2024-02-23 13:26:13,084: http://localhost:39427 "GET /api/jobs/92ca5dfeb6970722 HTTP/1.1" 200 1245 +urllib3.connectionpool DEBUG 2024-02-23 13:26:13,338: Starting new HTTP connection (1): localhost:39427 +urllib3.connectionpool DEBUG 2024-02-23 13:26:13,366: http://localhost:39427 "GET /api/jobs/92ca5dfeb6970722 HTTP/1.1" 200 1245 +urllib3.connectionpool DEBUG 2024-02-23 13:26:13,620: Starting new HTTP connection (1): localhost:39427 +urllib3.connectionpool DEBUG 2024-02-23 13:26:13,647: http://localhost:39427 "GET /api/jobs/92ca5dfeb6970722 HTTP/1.1" 200 1245 +urllib3.connectionpool DEBUG 2024-02-23 13:26:13,900: Starting new HTTP connection (1): localhost:39427 +urllib3.connectionpool DEBUG 2024-02-23 13:26:13,932: http://localhost:39427 "GET /api/jobs/92ca5dfeb6970722 HTTP/1.1" 200 1245 +urllib3.connectionpool DEBUG 2024-02-23 13:26:14,186: Starting new HTTP connection (1): localhost:39427 +urllib3.connectionpool DEBUG 2024-02-23 13:26:14,213: http://localhost:39427 "GET /api/jobs/92ca5dfeb6970722 HTTP/1.1" 200 1245 +urllib3.connectionpool DEBUG 2024-02-23 13:26:14,467: Starting new HTTP connection (1): localhost:39427 +urllib3.connectionpool DEBUG 2024-02-23 13:26:14,493: http://localhost:39427 "GET /api/jobs/92ca5dfeb6970722 HTTP/1.1" 200 1245 +urllib3.connectionpool DEBUG 2024-02-23 13:26:14,747: Starting new HTTP connection (1): localhost:39427 +urllib3.connectionpool DEBUG 2024-02-23 13:26:14,779: http://localhost:39427 "GET /api/jobs/92ca5dfeb6970722 HTTP/1.1" 200 1245 +urllib3.connectionpool DEBUG 2024-02-23 13:26:15,032: Starting new HTTP connection (1): localhost:39427 +urllib3.connectionpool DEBUG 2024-02-23 13:26:15,059: http://localhost:39427 "GET /api/jobs/92ca5dfeb6970722 HTTP/1.1" 200 1245 +urllib3.connectionpool DEBUG 2024-02-23 13:26:15,313: Starting new HTTP connection (1): localhost:39427 +urllib3.connectionpool DEBUG 2024-02-23 13:26:15,339: http://localhost:39427 "GET /api/jobs/92ca5dfeb6970722 HTTP/1.1" 200 1245 +urllib3.connectionpool DEBUG 2024-02-23 13:26:15,593: Starting new HTTP connection (1): localhost:39427 +urllib3.connectionpool DEBUG 2024-02-23 13:26:15,621: http://localhost:39427 "GET /api/jobs/92ca5dfeb6970722 HTTP/1.1" 200 1245 +urllib3.connectionpool DEBUG 2024-02-23 13:26:15,875: Starting new HTTP connection (1): localhost:39427 +urllib3.connectionpool DEBUG 2024-02-23 13:26:15,903: http://localhost:39427 "GET /api/jobs/92ca5dfeb6970722 HTTP/1.1" 200 1245 +urllib3.connectionpool DEBUG 2024-02-23 13:26:16,157: Starting new HTTP connection (1): localhost:39427 +urllib3.connectionpool DEBUG 2024-02-23 13:26:16,184: http://localhost:39427 "GET /api/jobs/92ca5dfeb6970722 HTTP/1.1" 200 1245 +urllib3.connectionpool DEBUG 2024-02-23 13:26:16,437: Starting new HTTP connection (1): localhost:39427 +urllib3.connectionpool DEBUG 2024-02-23 13:26:16,464: http://localhost:39427 "GET /api/jobs/92ca5dfeb6970722 HTTP/1.1" 200 1245 +urllib3.connectionpool DEBUG 2024-02-23 13:26:16,717: Starting new HTTP connection (1): localhost:39427 +urllib3.connectionpool DEBUG 2024-02-23 13:26:16,749: http://localhost:39427 "GET /api/jobs/92ca5dfeb6970722 HTTP/1.1" 200 1245 +urllib3.connectionpool DEBUG 2024-02-23 13:26:17,003: Starting new HTTP connection (1): localhost:39427 +urllib3.connectionpool DEBUG 2024-02-23 13:26:17,030: http://localhost:39427 "GET /api/jobs/92ca5dfeb6970722 HTTP/1.1" 200 1245 +urllib3.connectionpool DEBUG 2024-02-23 13:26:17,284: Starting new HTTP connection (1): localhost:39427 +urllib3.connectionpool DEBUG 2024-02-23 13:26:17,318: http://localhost:39427 "GET /api/jobs/92ca5dfeb6970722 HTTP/1.1" 200 1245 +urllib3.connectionpool DEBUG 2024-02-23 13:26:17,571: Starting new HTTP connection (1): localhost:39427 +urllib3.connectionpool DEBUG 2024-02-23 13:26:17,598: http://localhost:39427 "GET /api/jobs/92ca5dfeb6970722 HTTP/1.1" 200 1245 +urllib3.connectionpool DEBUG 2024-02-23 13:26:17,852: Starting new HTTP connection (1): localhost:39427 +urllib3.connectionpool DEBUG 2024-02-23 13:26:17,878: http://localhost:39427 "GET /api/jobs/92ca5dfeb6970722 HTTP/1.1" 200 1245 +urllib3.connectionpool DEBUG 2024-02-23 13:26:18,132: Starting new HTTP connection (1): localhost:39427 +urllib3.connectionpool DEBUG 2024-02-23 13:26:18,158: http://localhost:39427 "GET /api/jobs/92ca5dfeb6970722 HTTP/1.1" 200 1245 +urllib3.connectionpool DEBUG 2024-02-23 13:26:18,412: Starting new HTTP connection (1): localhost:39427 +urllib3.connectionpool DEBUG 2024-02-23 13:26:18,438: http://localhost:39427 "GET /api/jobs/92ca5dfeb6970722 HTTP/1.1" 200 1245 +urllib3.connectionpool DEBUG 2024-02-23 13:26:18,692: Starting new HTTP connection (1): localhost:39427 +urllib3.connectionpool DEBUG 2024-02-23 13:26:18,724: http://localhost:39427 "GET /api/jobs/92ca5dfeb6970722 HTTP/1.1" 200 1245 +urllib3.connectionpool DEBUG 2024-02-23 13:26:18,978: Starting new HTTP connection (1): localhost:39427 +urllib3.connectionpool DEBUG 2024-02-23 13:26:19,004: http://localhost:39427 "GET /api/jobs/92ca5dfeb6970722 HTTP/1.1" 200 1245 +urllib3.connectionpool DEBUG 2024-02-23 13:26:19,257: Starting new HTTP connection (1): localhost:39427 +urllib3.connectionpool DEBUG 2024-02-23 13:26:19,285: http://localhost:39427 "GET /api/jobs/92ca5dfeb6970722 HTTP/1.1" 200 1245 +urllib3.connectionpool DEBUG 2024-02-23 13:26:19,539: Starting new HTTP connection (1): localhost:39427 +urllib3.connectionpool DEBUG 2024-02-23 13:26:19,565: http://localhost:39427 "GET /api/jobs/92ca5dfeb6970722 HTTP/1.1" 200 1245 +urllib3.connectionpool DEBUG 2024-02-23 13:26:19,819: Starting new HTTP connection (1): localhost:39427 +urllib3.connectionpool DEBUG 2024-02-23 13:26:19,849: http://localhost:39427 "GET /api/jobs/92ca5dfeb6970722 HTTP/1.1" 200 1245 +urllib3.connectionpool DEBUG 2024-02-23 13:26:20,103: Starting new HTTP connection (1): localhost:39427 +urllib3.connectionpool DEBUG 2024-02-23 13:26:20,144: http://localhost:39427 "GET /api/jobs/92ca5dfeb6970722 HTTP/1.1" 200 1245 +urllib3.connectionpool DEBUG 2024-02-23 13:26:20,398: Starting new HTTP connection (1): localhost:39427 +urllib3.connectionpool DEBUG 2024-02-23 13:26:20,425: http://localhost:39427 "GET /api/jobs/92ca5dfeb6970722 HTTP/1.1" 200 1245 +urllib3.connectionpool DEBUG 2024-02-23 13:26:20,678: Starting new HTTP connection (1): localhost:39427 +urllib3.connectionpool DEBUG 2024-02-23 13:26:20,711: http://localhost:39427 "GET /api/jobs/92ca5dfeb6970722 HTTP/1.1" 200 1245 +urllib3.connectionpool DEBUG 2024-02-23 13:26:20,965: Starting new HTTP connection (1): localhost:39427 +urllib3.connectionpool DEBUG 2024-02-23 13:26:20,990: http://localhost:39427 "GET /api/jobs/92ca5dfeb6970722 HTTP/1.1" 200 1245 +urllib3.connectionpool DEBUG 2024-02-23 13:26:21,244: Starting new HTTP connection (1): localhost:39427 +urllib3.connectionpool DEBUG 2024-02-23 13:26:21,270: http://localhost:39427 "GET /api/jobs/92ca5dfeb6970722 HTTP/1.1" 200 1245 +urllib3.connectionpool DEBUG 2024-02-23 13:26:21,524: Starting new HTTP connection (1): localhost:39427 +urllib3.connectionpool DEBUG 2024-02-23 13:26:21,550: http://localhost:39427 "GET /api/jobs/92ca5dfeb6970722 HTTP/1.1" 200 1245 +urllib3.connectionpool DEBUG 2024-02-23 13:26:21,804: Starting new HTTP connection (1): localhost:39427 +urllib3.connectionpool DEBUG 2024-02-23 13:26:21,835: http://localhost:39427 "GET /api/jobs/92ca5dfeb6970722 HTTP/1.1" 200 1245 +urllib3.connectionpool DEBUG 2024-02-23 13:26:22,089: Starting new HTTP connection (1): localhost:39427 +urllib3.connectionpool DEBUG 2024-02-23 13:26:22,115: http://localhost:39427 "GET /api/jobs/92ca5dfeb6970722 HTTP/1.1" 200 1245 +urllib3.connectionpool DEBUG 2024-02-23 13:26:22,369: Starting new HTTP connection (1): localhost:39427 +urllib3.connectionpool DEBUG 2024-02-23 13:26:22,398: http://localhost:39427 "GET /api/jobs/92ca5dfeb6970722 HTTP/1.1" 200 1245 +urllib3.connectionpool DEBUG 2024-02-23 13:26:22,652: Starting new HTTP connection (1): localhost:39427 +urllib3.connectionpool DEBUG 2024-02-23 13:26:22,682: http://localhost:39427 "GET /api/jobs/92ca5dfeb6970722 HTTP/1.1" 200 1245 +urllib3.connectionpool DEBUG 2024-02-23 13:26:22,936: Starting new HTTP connection (1): localhost:39427 +urllib3.connectionpool DEBUG 2024-02-23 13:26:22,962: http://localhost:39427 "GET /api/jobs/92ca5dfeb6970722 HTTP/1.1" 200 1245 +urllib3.connectionpool DEBUG 2024-02-23 13:26:23,215: Starting new HTTP connection (1): localhost:39427 +urllib3.connectionpool DEBUG 2024-02-23 13:26:23,241: http://localhost:39427 "GET /api/jobs/92ca5dfeb6970722 HTTP/1.1" 200 1245 +urllib3.connectionpool DEBUG 2024-02-23 13:26:23,495: Starting new HTTP connection (1): localhost:39427 +urllib3.connectionpool DEBUG 2024-02-23 13:26:23,521: http://localhost:39427 "GET /api/jobs/92ca5dfeb6970722 HTTP/1.1" 200 1245 +urllib3.connectionpool DEBUG 2024-02-23 13:26:23,775: Starting new HTTP connection (1): localhost:39427 +urllib3.connectionpool DEBUG 2024-02-23 13:26:23,802: http://localhost:39427 "GET /api/jobs/92ca5dfeb6970722 HTTP/1.1" 200 1245 +urllib3.connectionpool DEBUG 2024-02-23 13:26:24,056: Starting new HTTP connection (1): localhost:39427 +urllib3.connectionpool DEBUG 2024-02-23 13:26:24,083: http://localhost:39427 "GET /api/jobs/92ca5dfeb6970722 HTTP/1.1" 200 1245 +urllib3.connectionpool DEBUG 2024-02-23 13:26:24,336: Starting new HTTP connection (1): localhost:39427 +urllib3.connectionpool DEBUG 2024-02-23 13:26:24,362: http://localhost:39427 "GET /api/jobs/92ca5dfeb6970722 HTTP/1.1" 200 1245 +urllib3.connectionpool DEBUG 2024-02-23 13:26:24,616: Starting new HTTP connection (1): localhost:39427 +urllib3.connectionpool DEBUG 2024-02-23 13:26:24,647: http://localhost:39427 "GET /api/jobs/92ca5dfeb6970722 HTTP/1.1" 200 1245 +urllib3.connectionpool DEBUG 2024-02-23 13:26:24,900: Starting new HTTP connection (1): localhost:39427 +urllib3.connectionpool DEBUG 2024-02-23 13:26:24,929: http://localhost:39427 "GET /api/jobs/92ca5dfeb6970722 HTTP/1.1" 200 1245 +urllib3.connectionpool DEBUG 2024-02-23 13:26:25,183: Starting new HTTP connection (1): localhost:39427 +urllib3.connectionpool DEBUG 2024-02-23 13:26:25,210: http://localhost:39427 "GET /api/jobs/92ca5dfeb6970722 HTTP/1.1" 200 1245 +urllib3.connectionpool DEBUG 2024-02-23 13:26:25,464: Starting new HTTP connection (1): localhost:39427 +urllib3.connectionpool DEBUG 2024-02-23 13:26:25,490: http://localhost:39427 "GET /api/jobs/92ca5dfeb6970722 HTTP/1.1" 200 1245 +urllib3.connectionpool DEBUG 2024-02-23 13:26:25,744: Starting new HTTP connection (1): localhost:39427 +urllib3.connectionpool DEBUG 2024-02-23 13:26:25,770: http://localhost:39427 "GET /api/jobs/92ca5dfeb6970722 HTTP/1.1" 200 1245 +urllib3.connectionpool DEBUG 2024-02-23 13:26:26,024: Starting new HTTP connection (1): localhost:39427 +urllib3.connectionpool DEBUG 2024-02-23 13:26:26,050: http://localhost:39427 "GET /api/jobs/92ca5dfeb6970722 HTTP/1.1" 200 1245 +urllib3.connectionpool DEBUG 2024-02-23 13:26:26,304: Starting new HTTP connection (1): localhost:39427 +urllib3.connectionpool DEBUG 2024-02-23 13:26:26,331: http://localhost:39427 "GET /api/jobs/92ca5dfeb6970722 HTTP/1.1" 200 1245 +urllib3.connectionpool DEBUG 2024-02-23 13:26:26,585: Starting new HTTP connection (1): localhost:39427 +urllib3.connectionpool DEBUG 2024-02-23 13:26:26,611: http://localhost:39427 "GET /api/jobs/92ca5dfeb6970722 HTTP/1.1" 200 1245 +urllib3.connectionpool DEBUG 2024-02-23 13:26:26,864: Starting new HTTP connection (1): localhost:39427 +urllib3.connectionpool DEBUG 2024-02-23 13:26:26,892: http://localhost:39427 "GET /api/jobs/92ca5dfeb6970722 HTTP/1.1" 200 1245 +urllib3.connectionpool DEBUG 2024-02-23 13:26:27,146: Starting new HTTP connection (1): localhost:39427 +urllib3.connectionpool DEBUG 2024-02-23 13:26:27,172: http://localhost:39427 "GET /api/jobs/92ca5dfeb6970722 HTTP/1.1" 200 1245 +urllib3.connectionpool DEBUG 2024-02-23 13:26:27,426: Starting new HTTP connection (1): localhost:39427 +urllib3.connectionpool DEBUG 2024-02-23 13:26:27,453: http://localhost:39427 "GET /api/jobs/92ca5dfeb6970722 HTTP/1.1" 200 1245 +urllib3.connectionpool DEBUG 2024-02-23 13:26:27,707: Starting new HTTP connection (1): localhost:39427 +urllib3.connectionpool DEBUG 2024-02-23 13:26:27,738: http://localhost:39427 "GET /api/jobs/92ca5dfeb6970722 HTTP/1.1" 200 1245 +urllib3.connectionpool DEBUG 2024-02-23 13:26:27,991: Starting new HTTP connection (1): localhost:39427 +urllib3.connectionpool DEBUG 2024-02-23 13:26:28,020: http://localhost:39427 "GET /api/jobs/92ca5dfeb6970722 HTTP/1.1" 200 1245 +urllib3.connectionpool DEBUG 2024-02-23 13:26:28,273: Starting new HTTP connection (1): localhost:39427 +urllib3.connectionpool DEBUG 2024-02-23 13:26:28,312: http://localhost:39427 "GET /api/jobs/92ca5dfeb6970722 HTTP/1.1" 200 1245 +urllib3.connectionpool DEBUG 2024-02-23 13:26:28,566: Starting new HTTP connection (1): localhost:39427 +urllib3.connectionpool DEBUG 2024-02-23 13:26:28,595: http://localhost:39427 "GET /api/jobs/92ca5dfeb6970722 HTTP/1.1" 200 1245 +urllib3.connectionpool DEBUG 2024-02-23 13:26:28,849: Starting new HTTP connection (1): localhost:39427 +urllib3.connectionpool DEBUG 2024-02-23 13:26:28,876: http://localhost:39427 "GET /api/jobs/92ca5dfeb6970722 HTTP/1.1" 200 1245 +urllib3.connectionpool DEBUG 2024-02-23 13:26:29,129: Starting new HTTP connection (1): localhost:39427 +urllib3.connectionpool DEBUG 2024-02-23 13:26:29,162: http://localhost:39427 "GET /api/jobs/92ca5dfeb6970722 HTTP/1.1" 200 1245 +urllib3.connectionpool DEBUG 2024-02-23 13:26:29,416: Starting new HTTP connection (1): localhost:39427 +urllib3.connectionpool DEBUG 2024-02-23 13:26:29,441: http://localhost:39427 "GET /api/jobs/92ca5dfeb6970722 HTTP/1.1" 200 1245 +urllib3.connectionpool DEBUG 2024-02-23 13:26:29,694: Starting new HTTP connection (1): localhost:39427 +urllib3.connectionpool DEBUG 2024-02-23 13:26:29,730: http://localhost:39427 "GET /api/jobs/92ca5dfeb6970722 HTTP/1.1" 200 1245 +urllib3.connectionpool DEBUG 2024-02-23 13:26:29,984: Starting new HTTP connection (1): localhost:39427 +urllib3.connectionpool DEBUG 2024-02-23 13:26:30,011: http://localhost:39427 "GET /api/jobs/92ca5dfeb6970722 HTTP/1.1" 200 1245 +urllib3.connectionpool DEBUG 2024-02-23 13:26:30,264: Starting new HTTP connection (1): localhost:39427 +urllib3.connectionpool DEBUG 2024-02-23 13:26:30,305: http://localhost:39427 "GET /api/jobs/92ca5dfeb6970722 HTTP/1.1" 200 1245 +urllib3.connectionpool DEBUG 2024-02-23 13:26:30,559: Starting new HTTP connection (1): localhost:39427 +urllib3.connectionpool DEBUG 2024-02-23 13:26:30,589: http://localhost:39427 "GET /api/jobs/92ca5dfeb6970722 HTTP/1.1" 200 1245 +urllib3.connectionpool DEBUG 2024-02-23 13:26:30,843: Starting new HTTP connection (1): localhost:39427 +urllib3.connectionpool DEBUG 2024-02-23 13:26:30,870: http://localhost:39427 "GET /api/jobs/92ca5dfeb6970722 HTTP/1.1" 200 1245 +urllib3.connectionpool DEBUG 2024-02-23 13:26:31,124: Starting new HTTP connection (1): localhost:39427 +urllib3.connectionpool DEBUG 2024-02-23 13:26:31,156: http://localhost:39427 "GET /api/jobs/92ca5dfeb6970722 HTTP/1.1" 200 1245 +urllib3.connectionpool DEBUG 2024-02-23 13:26:31,410: Starting new HTTP connection (1): localhost:39427 +urllib3.connectionpool DEBUG 2024-02-23 13:26:31,439: http://localhost:39427 "GET /api/jobs/92ca5dfeb6970722 HTTP/1.1" 200 1245 +urllib3.connectionpool DEBUG 2024-02-23 13:26:31,693: Starting new HTTP connection (1): localhost:39427 +urllib3.connectionpool DEBUG 2024-02-23 13:26:31,721: http://localhost:39427 "GET /api/jobs/92ca5dfeb6970722 HTTP/1.1" 200 1245 +urllib3.connectionpool DEBUG 2024-02-23 13:26:31,975: Starting new HTTP connection (1): localhost:39427 +urllib3.connectionpool DEBUG 2024-02-23 13:26:32,004: http://localhost:39427 "GET /api/jobs/92ca5dfeb6970722 HTTP/1.1" 200 1245 +urllib3.connectionpool DEBUG 2024-02-23 13:26:32,258: Starting new HTTP connection (1): localhost:39427 +urllib3.connectionpool DEBUG 2024-02-23 13:26:32,286: http://localhost:39427 "GET /api/jobs/92ca5dfeb6970722 HTTP/1.1" 200 1245 +urllib3.connectionpool DEBUG 2024-02-23 13:26:32,540: Starting new HTTP connection (1): localhost:39427 +urllib3.connectionpool DEBUG 2024-02-23 13:26:32,573: http://localhost:39427 "GET /api/jobs/92ca5dfeb6970722 HTTP/1.1" 200 1245 +urllib3.connectionpool DEBUG 2024-02-23 13:26:32,827: Starting new HTTP connection (1): localhost:39427 +urllib3.connectionpool DEBUG 2024-02-23 13:26:32,871: http://localhost:39427 "GET /api/jobs/92ca5dfeb6970722 HTTP/1.1" 200 1245 +urllib3.connectionpool DEBUG 2024-02-23 13:26:33,125: Starting new HTTP connection (1): localhost:39427 +urllib3.connectionpool DEBUG 2024-02-23 13:26:33,153: http://localhost:39427 "GET /api/jobs/92ca5dfeb6970722 HTTP/1.1" 200 1245 +urllib3.connectionpool DEBUG 2024-02-23 13:26:33,407: Starting new HTTP connection (1): localhost:39427 +urllib3.connectionpool DEBUG 2024-02-23 13:26:33,443: http://localhost:39427 "GET /api/jobs/92ca5dfeb6970722 HTTP/1.1" 200 1245 +urllib3.connectionpool DEBUG 2024-02-23 13:26:33,697: Starting new HTTP connection (1): localhost:39427 +urllib3.connectionpool DEBUG 2024-02-23 13:26:33,730: http://localhost:39427 "GET /api/jobs/92ca5dfeb6970722 HTTP/1.1" 200 1245 +urllib3.connectionpool DEBUG 2024-02-23 13:26:33,984: Starting new HTTP connection (1): localhost:39427 +urllib3.connectionpool DEBUG 2024-02-23 13:26:34,014: http://localhost:39427 "GET /api/jobs/92ca5dfeb6970722 HTTP/1.1" 200 1245 +urllib3.connectionpool DEBUG 2024-02-23 13:26:34,268: Starting new HTTP connection (1): localhost:39427 +urllib3.connectionpool DEBUG 2024-02-23 13:26:34,297: http://localhost:39427 "GET /api/jobs/92ca5dfeb6970722 HTTP/1.1" 200 1245 +urllib3.connectionpool DEBUG 2024-02-23 13:26:34,551: Starting new HTTP connection (1): localhost:39427 +urllib3.connectionpool DEBUG 2024-02-23 13:26:34,579: http://localhost:39427 "GET /api/jobs/92ca5dfeb6970722 HTTP/1.1" 200 1245 +urllib3.connectionpool DEBUG 2024-02-23 13:26:34,833: Starting new HTTP connection (1): localhost:39427 +urllib3.connectionpool DEBUG 2024-02-23 13:26:34,866: http://localhost:39427 "GET /api/jobs/92ca5dfeb6970722 HTTP/1.1" 200 1245 +urllib3.connectionpool DEBUG 2024-02-23 13:26:35,120: Starting new HTTP connection (1): localhost:39427 +urllib3.connectionpool DEBUG 2024-02-23 13:26:35,149: http://localhost:39427 "GET /api/jobs/92ca5dfeb6970722 HTTP/1.1" 200 1245 +urllib3.connectionpool DEBUG 2024-02-23 13:26:35,403: Starting new HTTP connection (1): localhost:39427 +urllib3.connectionpool DEBUG 2024-02-23 13:26:35,435: http://localhost:39427 "GET /api/jobs/92ca5dfeb6970722 HTTP/1.1" 200 1245 +urllib3.connectionpool DEBUG 2024-02-23 13:26:35,689: Starting new HTTP connection (1): localhost:39427 +urllib3.connectionpool DEBUG 2024-02-23 13:26:35,718: http://localhost:39427 "GET /api/jobs/92ca5dfeb6970722 HTTP/1.1" 200 1245 +urllib3.connectionpool DEBUG 2024-02-23 13:26:35,972: Starting new HTTP connection (1): localhost:39427 +urllib3.connectionpool DEBUG 2024-02-23 13:26:36,000: http://localhost:39427 "GET /api/jobs/92ca5dfeb6970722 HTTP/1.1" 200 1245 +urllib3.connectionpool DEBUG 2024-02-23 13:26:36,254: Starting new HTTP connection (1): localhost:39427 +urllib3.connectionpool DEBUG 2024-02-23 13:26:36,283: http://localhost:39427 "GET /api/jobs/92ca5dfeb6970722 HTTP/1.1" 200 1245 +urllib3.connectionpool DEBUG 2024-02-23 13:26:36,537: Starting new HTTP connection (1): localhost:39427 +urllib3.connectionpool DEBUG 2024-02-23 13:26:36,569: http://localhost:39427 "GET /api/jobs/92ca5dfeb6970722 HTTP/1.1" 200 1245 +urllib3.connectionpool DEBUG 2024-02-23 13:26:36,823: Starting new HTTP connection (1): localhost:39427 +urllib3.connectionpool DEBUG 2024-02-23 13:26:36,862: http://localhost:39427 "GET /api/jobs/92ca5dfeb6970722 HTTP/1.1" 200 1245 +urllib3.connectionpool DEBUG 2024-02-23 13:26:37,116: Starting new HTTP connection (1): localhost:39427 +urllib3.connectionpool DEBUG 2024-02-23 13:26:37,149: http://localhost:39427 "GET /api/jobs/92ca5dfeb6970722 HTTP/1.1" 200 1245 +urllib3.connectionpool DEBUG 2024-02-23 13:26:37,403: Starting new HTTP connection (1): localhost:39427 +urllib3.connectionpool DEBUG 2024-02-23 13:26:37,433: http://localhost:39427 "GET /api/jobs/92ca5dfeb6970722 HTTP/1.1" 200 1245 +urllib3.connectionpool DEBUG 2024-02-23 13:26:37,686: Starting new HTTP connection (1): localhost:39427 +urllib3.connectionpool DEBUG 2024-02-23 13:26:37,716: http://localhost:39427 "GET /api/jobs/92ca5dfeb6970722 HTTP/1.1" 200 1245 +urllib3.connectionpool DEBUG 2024-02-23 13:26:37,970: Starting new HTTP connection (1): localhost:39427 +urllib3.connectionpool DEBUG 2024-02-23 13:26:37,997: http://localhost:39427 "GET /api/jobs/92ca5dfeb6970722 HTTP/1.1" 200 1245 +urllib3.connectionpool DEBUG 2024-02-23 13:26:38,251: Starting new HTTP connection (1): localhost:39427 +urllib3.connectionpool DEBUG 2024-02-23 13:26:38,282: http://localhost:39427 "GET /api/jobs/92ca5dfeb6970722 HTTP/1.1" 200 1245 +urllib3.connectionpool DEBUG 2024-02-23 13:26:38,536: Starting new HTTP connection (1): localhost:39427 +urllib3.connectionpool DEBUG 2024-02-23 13:26:38,575: http://localhost:39427 "GET /api/jobs/92ca5dfeb6970722 HTTP/1.1" 200 1245 +urllib3.connectionpool DEBUG 2024-02-23 13:26:38,828: Starting new HTTP connection (1): localhost:39427 +urllib3.connectionpool DEBUG 2024-02-23 13:26:38,858: http://localhost:39427 "GET /api/jobs/92ca5dfeb6970722 HTTP/1.1" 200 1245 +urllib3.connectionpool DEBUG 2024-02-23 13:26:39,112: Starting new HTTP connection (1): localhost:39427 +urllib3.connectionpool DEBUG 2024-02-23 13:26:39,141: http://localhost:39427 "GET /api/jobs/92ca5dfeb6970722 HTTP/1.1" 200 1245 +urllib3.connectionpool DEBUG 2024-02-23 13:26:39,395: Starting new HTTP connection (1): localhost:39427 +urllib3.connectionpool DEBUG 2024-02-23 13:26:39,423: http://localhost:39427 "GET /api/jobs/92ca5dfeb6970722 HTTP/1.1" 200 1245 +urllib3.connectionpool DEBUG 2024-02-23 13:26:39,677: Starting new HTTP connection (1): localhost:39427 +urllib3.connectionpool DEBUG 2024-02-23 13:26:39,714: http://localhost:39427 "GET /api/jobs/92ca5dfeb6970722 HTTP/1.1" 200 1245 +urllib3.connectionpool DEBUG 2024-02-23 13:26:39,968: Starting new HTTP connection (1): localhost:39427 +urllib3.connectionpool DEBUG 2024-02-23 13:26:40,000: http://localhost:39427 "GET /api/jobs/92ca5dfeb6970722 HTTP/1.1" 200 1245 +urllib3.connectionpool DEBUG 2024-02-23 13:26:40,254: Starting new HTTP connection (1): localhost:39427 +urllib3.connectionpool DEBUG 2024-02-23 13:26:40,280: http://localhost:39427 "GET /api/jobs/92ca5dfeb6970722 HTTP/1.1" 200 1245 +urllib3.connectionpool DEBUG 2024-02-23 13:26:40,534: Starting new HTTP connection (1): localhost:39427 +urllib3.connectionpool DEBUG 2024-02-23 13:26:40,561: http://localhost:39427 "GET /api/jobs/92ca5dfeb6970722 HTTP/1.1" 200 1245 +urllib3.connectionpool DEBUG 2024-02-23 13:26:40,815: Starting new HTTP connection (1): localhost:39427 +urllib3.connectionpool DEBUG 2024-02-23 13:26:40,842: http://localhost:39427 "GET /api/jobs/92ca5dfeb6970722 HTTP/1.1" 200 1245 +urllib3.connectionpool DEBUG 2024-02-23 13:26:41,096: Starting new HTTP connection (1): localhost:39427 +urllib3.connectionpool DEBUG 2024-02-23 13:26:41,124: http://localhost:39427 "GET /api/jobs/92ca5dfeb6970722 HTTP/1.1" 200 1245 +urllib3.connectionpool DEBUG 2024-02-23 13:26:41,378: Starting new HTTP connection (1): localhost:39427 +urllib3.connectionpool DEBUG 2024-02-23 13:26:41,405: http://localhost:39427 "GET /api/jobs/92ca5dfeb6970722 HTTP/1.1" 200 1245 +urllib3.connectionpool DEBUG 2024-02-23 13:26:41,659: Starting new HTTP connection (1): localhost:39427 +urllib3.connectionpool DEBUG 2024-02-23 13:26:41,700: http://localhost:39427 "GET /api/jobs/92ca5dfeb6970722 HTTP/1.1" 200 1245 +urllib3.connectionpool DEBUG 2024-02-23 13:26:41,953: Starting new HTTP connection (1): localhost:39427 +urllib3.connectionpool DEBUG 2024-02-23 13:26:41,987: http://localhost:39427 "GET /api/jobs/92ca5dfeb6970722 HTTP/1.1" 200 1245 +urllib3.connectionpool DEBUG 2024-02-23 13:26:42,241: Starting new HTTP connection (1): localhost:39427 +urllib3.connectionpool DEBUG 2024-02-23 13:26:42,275: http://localhost:39427 "GET /api/jobs/92ca5dfeb6970722 HTTP/1.1" 200 1245 +urllib3.connectionpool DEBUG 2024-02-23 13:26:42,529: Starting new HTTP connection (1): localhost:39427 +urllib3.connectionpool DEBUG 2024-02-23 13:26:42,563: http://localhost:39427 "GET /api/jobs/92ca5dfeb6970722 HTTP/1.1" 200 1245 +urllib3.connectionpool DEBUG 2024-02-23 13:26:42,817: Starting new HTTP connection (1): localhost:39427 +urllib3.connectionpool DEBUG 2024-02-23 13:26:42,848: http://localhost:39427 "GET /api/jobs/92ca5dfeb6970722 HTTP/1.1" 200 1245 +urllib3.connectionpool DEBUG 2024-02-23 13:26:43,102: Starting new HTTP connection (1): localhost:39427 +urllib3.connectionpool DEBUG 2024-02-23 13:26:43,131: http://localhost:39427 "GET /api/jobs/92ca5dfeb6970722 HTTP/1.1" 200 1245 +urllib3.connectionpool DEBUG 2024-02-23 13:26:43,385: Starting new HTTP connection (1): localhost:39427 +urllib3.connectionpool DEBUG 2024-02-23 13:26:43,415: http://localhost:39427 "GET /api/jobs/92ca5dfeb6970722 HTTP/1.1" 200 1245 +urllib3.connectionpool DEBUG 2024-02-23 13:26:43,668: Starting new HTTP connection (1): localhost:39427 +urllib3.connectionpool DEBUG 2024-02-23 13:26:43,717: http://localhost:39427 "GET /api/jobs/92ca5dfeb6970722 HTTP/1.1" 200 1245 +urllib3.connectionpool DEBUG 2024-02-23 13:26:43,971: Starting new HTTP connection (1): localhost:39427 +urllib3.connectionpool DEBUG 2024-02-23 13:26:44,003: http://localhost:39427 "GET /api/jobs/92ca5dfeb6970722 HTTP/1.1" 200 1245 +urllib3.connectionpool DEBUG 2024-02-23 13:26:44,256: Starting new HTTP connection (1): localhost:39427 +urllib3.connectionpool DEBUG 2024-02-23 13:26:44,282: http://localhost:39427 "GET /api/jobs/92ca5dfeb6970722 HTTP/1.1" 200 1245 +urllib3.connectionpool DEBUG 2024-02-23 13:26:44,536: Starting new HTTP connection (1): localhost:39427 +urllib3.connectionpool DEBUG 2024-02-23 13:26:44,564: http://localhost:39427 "GET /api/jobs/92ca5dfeb6970722 HTTP/1.1" 200 1245 +urllib3.connectionpool DEBUG 2024-02-23 13:26:44,818: Starting new HTTP connection (1): localhost:39427 +urllib3.connectionpool DEBUG 2024-02-23 13:26:44,868: http://localhost:39427 "GET /api/jobs/92ca5dfeb6970722 HTTP/1.1" 200 1245 +urllib3.connectionpool DEBUG 2024-02-23 13:26:45,122: Starting new HTTP connection (1): localhost:39427 +urllib3.connectionpool DEBUG 2024-02-23 13:26:45,157: http://localhost:39427 "GET /api/jobs/92ca5dfeb6970722 HTTP/1.1" 200 1245 +urllib3.connectionpool DEBUG 2024-02-23 13:26:45,411: Starting new HTTP connection (1): localhost:39427 +urllib3.connectionpool DEBUG 2024-02-23 13:26:45,442: http://localhost:39427 "GET /api/jobs/92ca5dfeb6970722 HTTP/1.1" 200 1245 +urllib3.connectionpool DEBUG 2024-02-23 13:26:45,695: Starting new HTTP connection (1): localhost:39427 +urllib3.connectionpool DEBUG 2024-02-23 13:26:45,723: http://localhost:39427 "GET /api/jobs/92ca5dfeb6970722 HTTP/1.1" 200 1245 +urllib3.connectionpool DEBUG 2024-02-23 13:26:45,976: Starting new HTTP connection (1): localhost:39427 +urllib3.connectionpool DEBUG 2024-02-23 13:26:46,007: http://localhost:39427 "GET /api/jobs/92ca5dfeb6970722 HTTP/1.1" 200 1245 +urllib3.connectionpool DEBUG 2024-02-23 13:26:46,261: Starting new HTTP connection (1): localhost:39427 +urllib3.connectionpool DEBUG 2024-02-23 13:26:46,292: http://localhost:39427 "GET /api/jobs/92ca5dfeb6970722 HTTP/1.1" 200 1245 +urllib3.connectionpool DEBUG 2024-02-23 13:26:46,545: Starting new HTTP connection (1): localhost:39427 +urllib3.connectionpool DEBUG 2024-02-23 13:26:46,576: http://localhost:39427 "GET /api/jobs/92ca5dfeb6970722 HTTP/1.1" 200 1245 +urllib3.connectionpool DEBUG 2024-02-23 13:26:46,829: Starting new HTTP connection (1): localhost:39427 +urllib3.connectionpool DEBUG 2024-02-23 13:26:46,861: http://localhost:39427 "GET /api/jobs/92ca5dfeb6970722 HTTP/1.1" 200 1245 +urllib3.connectionpool DEBUG 2024-02-23 13:26:47,115: Starting new HTTP connection (1): localhost:39427 +urllib3.connectionpool DEBUG 2024-02-23 13:26:47,144: http://localhost:39427 "GET /api/jobs/92ca5dfeb6970722 HTTP/1.1" 200 1245 +urllib3.connectionpool DEBUG 2024-02-23 13:26:47,398: Starting new HTTP connection (1): localhost:39427 +urllib3.connectionpool DEBUG 2024-02-23 13:26:47,434: http://localhost:39427 "GET /api/jobs/92ca5dfeb6970722 HTTP/1.1" 200 1245 +urllib3.connectionpool DEBUG 2024-02-23 13:26:47,687: Starting new HTTP connection (1): localhost:39427 +urllib3.connectionpool DEBUG 2024-02-23 13:26:47,717: http://localhost:39427 "GET /api/jobs/92ca5dfeb6970722 HTTP/1.1" 200 1245 +urllib3.connectionpool DEBUG 2024-02-23 13:26:47,971: Starting new HTTP connection (1): localhost:39427 +urllib3.connectionpool DEBUG 2024-02-23 13:26:48,005: http://localhost:39427 "GET /api/jobs/92ca5dfeb6970722 HTTP/1.1" 200 1245 +urllib3.connectionpool DEBUG 2024-02-23 13:26:48,258: Starting new HTTP connection (1): localhost:39427 +urllib3.connectionpool DEBUG 2024-02-23 13:26:48,290: http://localhost:39427 "GET /api/jobs/92ca5dfeb6970722 HTTP/1.1" 200 1245 +urllib3.connectionpool DEBUG 2024-02-23 13:26:48,544: Starting new HTTP connection (1): localhost:39427 +urllib3.connectionpool DEBUG 2024-02-23 13:26:48,575: http://localhost:39427 "GET /api/jobs/92ca5dfeb6970722 HTTP/1.1" 200 1245 +urllib3.connectionpool DEBUG 2024-02-23 13:26:48,828: Starting new HTTP connection (1): localhost:39427 +urllib3.connectionpool DEBUG 2024-02-23 13:26:48,864: http://localhost:39427 "GET /api/jobs/92ca5dfeb6970722 HTTP/1.1" 200 1245 +urllib3.connectionpool DEBUG 2024-02-23 13:26:49,118: Starting new HTTP connection (1): localhost:39427 +urllib3.connectionpool DEBUG 2024-02-23 13:26:49,157: http://localhost:39427 "GET /api/jobs/92ca5dfeb6970722 HTTP/1.1" 200 1245 +urllib3.connectionpool DEBUG 2024-02-23 13:26:49,411: Starting new HTTP connection (1): localhost:39427 +urllib3.connectionpool DEBUG 2024-02-23 13:26:49,446: http://localhost:39427 "GET /api/jobs/92ca5dfeb6970722 HTTP/1.1" 200 1235 +urllib3.connectionpool DEBUG 2024-02-23 13:26:49,450: Starting new HTTP connection (1): localhost:39427 +urllib3.connectionpool DEBUG 2024-02-23 13:26:49,484: http://localhost:39427 "GET /api/jobs/92ca5dfeb6970722?full=true HTTP/1.1" 200 24009 +urllib3.connectionpool DEBUG 2024-02-23 13:26:49,488: Starting new HTTP connection (1): localhost:39427 +urllib3.connectionpool DEBUG 2024-02-23 13:26:49,519: http://localhost:39427 "GET /api/jobs/92ca5dfeb6970722 HTTP/1.1" 200 1235 +urllib3.connectionpool DEBUG 2024-02-23 13:26:49,522: Starting new HTTP connection (1): localhost:39427 +urllib3.connectionpool DEBUG 2024-02-23 13:26:49,550: http://localhost:39427 "GET /api/histories/f7b3fc53f9a1cdab/contents/6dbfa938ce9b0666/display?raw=true HTTP/1.1" 200 747 +urllib3.connectionpool DEBUG 2024-02-23 13:26:49,554: Starting new HTTP connection (1): localhost:39427 +urllib3.connectionpool DEBUG 2024-02-23 13:26:49,579: http://localhost:39427 "GET /api/tools/ncbi_fcs_adaptor/test_data_download?filename=adaptor_report.tab&tool_version=0.5.0+galaxy0 HTTP/1.1" 200 None +urllib3.connectionpool DEBUG 2024-02-23 13:26:49,583: Starting new HTTP connection (1): localhost:39427 +urllib3.connectionpool DEBUG 2024-02-23 13:26:49,625: http://localhost:39427 "GET /api/histories/f7b3fc53f9a1cdab/contents/6dbfa938ce9b0666 HTTP/1.1" 200 2910 +urllib3.connectionpool DEBUG 2024-02-23 13:26:49,629: Starting new HTTP connection (1): localhost:39427 +urllib3.connectionpool DEBUG 2024-02-23 13:26:49,658: http://localhost:39427 "GET /api/histories/f7b3fc53f9a1cdab/contents/6dbfa938ce9b0666/provenance HTTP/1.1" 200 None +urllib3.connectionpool DEBUG 2024-02-23 13:26:49,662: Starting new HTTP connection (1): localhost:39427 +urllib3.connectionpool DEBUG 2024-02-23 13:26:49,688: http://localhost:39427 "GET /api/jobs/92ca5dfeb6970722/outputs HTTP/1.1" 200 295 +urllib3.connectionpool DEBUG 2024-02-23 13:26:49,691: Starting new HTTP connection (1): localhost:39427 +urllib3.connectionpool DEBUG 2024-02-23 13:26:49,722: http://localhost:39427 "GET /api/jobs/92ca5dfeb6970722 HTTP/1.1" 200 1235 +urllib3.connectionpool DEBUG 2024-02-23 13:26:49,726: Starting new HTTP connection (1): localhost:39427 +urllib3.connectionpool DEBUG 2024-02-23 13:26:49,750: http://localhost:39427 "GET /api/histories/f7b3fc53f9a1cdab/contents/61b7cfd431b1c4f8/display?raw=true HTTP/1.1" 200 516117 +urllib3.connectionpool DEBUG 2024-02-23 13:26:49,761: Starting new HTTP connection (1): localhost:39427 +urllib3.connectionpool DEBUG 2024-02-23 13:26:49,782: http://localhost:39427 "GET /api/tools/ncbi_fcs_adaptor/test_data_download?filename=clean_fasta.fa.gz&tool_version=0.5.0+galaxy0 HTTP/1.1" 200 None +urllib3.connectionpool DEBUG 2024-02-23 13:26:49,808: Starting new HTTP connection (1): localhost:39427 +urllib3.connectionpool DEBUG 2024-02-23 13:26:49,865: http://localhost:39427 "GET /api/histories/f7b3fc53f9a1cdab/contents/61b7cfd431b1c4f8 HTTP/1.1" 200 2257 +urllib3.connectionpool DEBUG 2024-02-23 13:26:49,868: Starting new HTTP connection (1): localhost:39427 +urllib3.connectionpool DEBUG 2024-02-23 13:26:49,905: http://localhost:39427 "GET /api/histories/f7b3fc53f9a1cdab/contents/61b7cfd431b1c4f8/provenance HTTP/1.1" 200 None +urllib3.connectionpool DEBUG 2024-02-23 13:26:49,909: Starting new HTTP connection (1): localhost:39427 +urllib3.connectionpool DEBUG 2024-02-23 13:26:49,938: http://localhost:39427 "GET /api/jobs/92ca5dfeb6970722/outputs HTTP/1.1" 200 295 +urllib3.connectionpool DEBUG 2024-02-23 13:26:49,942: Starting new HTTP connection (1): localhost:39427 +urllib3.connectionpool DEBUG 2024-02-23 13:26:49,972: http://localhost:39427 "GET /api/jobs/92ca5dfeb6970722 HTTP/1.1" 200 1235 +urllib3.connectionpool DEBUG 2024-02-23 13:26:49,976: Starting new HTTP connection (1): localhost:39427 +galaxy.jobs.runners.util.process_groups DEBUG 2024-02-23 13:26:49,072 [pN:main.1,p:76310,tN:LocalRunner.work_thread-3] check_pg(): No process found in process group 77003 +galaxy.jobs.runners.local DEBUG 2024-02-23 13:26:49,073 [pN:main.1,p:76310,tN:LocalRunner.work_thread-3] execution finished: /tmp/tmpu7x63f_i/job_working_directory/000/4/galaxy_4.sh +galaxy.jobs DEBUG 2024-02-23 13:26:49,095 [pN:main.1,p:76310,tN:LocalRunner.work_thread-3] finish(): Moved /tmp/tmpu7x63f_i/job_working_directory/000/4/outputs/dataset_5bd87a72-fbff-4e4a-a27a-aa9a07b645ae.dat to /tmp/tmpu7x63f_i/files/5/b/d/dataset_5bd87a72-fbff-4e4a-a27a-aa9a07b645ae.dat +galaxy.jobs DEBUG 2024-02-23 13:26:49,096 [pN:main.1,p:76310,tN:LocalRunner.work_thread-3] finish(): Moved /tmp/tmpu7x63f_i/job_working_directory/000/4/outputs/dataset_2556b660-7d40-4c96-ae9b-4e54b5c33132.dat to /tmp/tmpu7x63f_i/files/2/5/5/dataset_2556b660-7d40-4c96-ae9b-4e54b5c33132.dat +galaxy.jobs DEBUG 2024-02-23 13:26:49,096 [pN:main.1,p:76310,tN:LocalRunner.work_thread-3] finish(): Moved /tmp/tmpu7x63f_i/job_working_directory/000/4/outputs/dataset_8294ec1f-feb6-4427-822b-0d653c89d82d.dat to /tmp/tmpu7x63f_i/files/8/2/9/dataset_8294ec1f-feb6-4427-822b-0d653c89d82d.dat +galaxy.jobs DEBUG 2024-02-23 13:26:49,096 [pN:main.1,p:76310,tN:LocalRunner.work_thread-3] finish(): Moved /tmp/tmpu7x63f_i/job_working_directory/000/4/outputs/dataset_664ec871-210e-4cf1-867e-c67d8419c064.dat to /tmp/tmpu7x63f_i/files/6/6/4/dataset_664ec871-210e-4cf1-867e-c67d8419c064.dat +galaxy.model.metadata DEBUG 2024-02-23 13:26:49,104 [pN:main.1,p:76310,tN:LocalRunner.work_thread-3] loading metadata from file for: HistoryDatasetAssociation 5 +galaxy.model.metadata DEBUG 2024-02-23 13:26:49,108 [pN:main.1,p:76310,tN:LocalRunner.work_thread-3] loading metadata from file for: HistoryDatasetAssociation 6 +galaxy.model.metadata DEBUG 2024-02-23 13:26:49,111 [pN:main.1,p:76310,tN:LocalRunner.work_thread-3] loading metadata from file for: HistoryDatasetAssociation 7 +galaxy.model.metadata DEBUG 2024-02-23 13:26:49,136 [pN:main.1,p:76310,tN:LocalRunner.work_thread-3] loading metadata from file for: HistoryDatasetAssociation 8 +galaxy.jobs DEBUG 2024-02-23 13:26:49,199 [pN:main.1,p:76310,tN:LocalRunner.work_thread-3] job_wrapper.finish for job 4 executed (108.579 ms) + +urllib3.connectionpool DEBUG 2024-02-23 13:26:50,004: http://localhost:39427 "GET /api/histories/f7b3fc53f9a1cdab/contents/61e4ab4928f54139/display?raw=true HTTP/1.1" 200 15017 +urllib3.connectionpool DEBUG 2024-02-23 13:26:50,010: Starting new HTTP connection (1): localhost:39427 +urllib3.connectionpool DEBUG 2024-02-23 13:26:50,048: http://localhost:39427 "GET /api/histories/f7b3fc53f9a1cdab/contents/61e4ab4928f54139/provenance HTTP/1.1" 200 None +urllib3.connectionpool DEBUG 2024-02-23 13:26:50,055: Starting new HTTP connection (1): localhost:39427 +urllib3.connectionpool DEBUG 2024-02-23 13:26:50,085: http://localhost:39427 "GET /api/jobs/92ca5dfeb6970722/outputs HTTP/1.1" 200 295 +urllib3.connectionpool DEBUG 2024-02-23 13:26:50,089: Starting new HTTP connection (1): localhost:39427 +urllib3.connectionpool DEBUG 2024-02-23 13:26:50,118: http://localhost:39427 "GET /api/jobs/92ca5dfeb6970722 HTTP/1.1" 200 1235 +urllib3.connectionpool DEBUG 2024-02-23 13:26:50,122: Starting new HTTP connection (1): localhost:39427 +urllib3.connectionpool DEBUG 2024-02-23 13:26:50,147: http://localhost:39427 "GET /api/histories/f7b3fc53f9a1cdab/contents/b449eaa0511fdf9e/display?raw=true HTTP/1.1" 200 0 +urllib3.connectionpool DEBUG 2024-02-23 13:26:50,150: Starting new HTTP connection (1): localhost:39427 +urllib3.connectionpool DEBUG 2024-02-23 13:26:50,178: http://localhost:39427 "GET /api/histories/f7b3fc53f9a1cdab/contents/b449eaa0511fdf9e/provenance HTTP/1.1" 200 None +urllib3.connectionpool DEBUG 2024-02-23 13:26:50,182: Starting new HTTP connection (1): localhost:39427 +urllib3.connectionpool DEBUG 2024-02-23 13:26:50,210: http://localhost:39427 "GET /api/jobs/92ca5dfeb6970722/outputs HTTP/1.1" 200 295 +urllib3.connectionpool DEBUG 2024-02-23 13:26:50,214: Starting new HTTP connection (1): localhost:39427 +urllib3.connectionpool DEBUG 2024-02-23 13:26:50,259: http://localhost:39427 "DELETE /api/histories/f7b3fc53f9a1cdab HTTP/1.1" 200 1099 +Galaxy Log: +galaxy.jobs DEBUG 2024-02-23 12:54:49,300 [pN:main,p:69576,tN:MainThread] Loading job configuration from /scratch/rico/galaxytools/tools/ncbi_fcs_adaptor/planemo_job_conf.xml +galaxy.jobs DEBUG 2024-02-23 12:54:49,301 [pN:main,p:69576,tN:MainThread] Read job configuration from file: /scratch/rico/galaxytools/tools/ncbi_fcs_adaptor/planemo_job_conf.xml +galaxy.web_stack.handlers INFO 2024-02-23 12:54:49,310 [pN:main,p:69576,tN:MainThread] JobConfiguration: No job handler assignment method is set, defaulting to 'HANDLER_ASSIGNMENT_METHODS.DB_SKIP_LOCKED', set the `assign_with` attribute on <handlers> to override the default +galaxy.jobs INFO 2024-02-23 12:54:49,311 [pN:main,p:69576,tN:MainThread] Job handler assignment methods set to: db-skip-locked +galaxy.web_stack.handlers DEBUG 2024-02-23 12:54:49,311 [pN:main,p:69576,tN:MainThread] default set to child with id or tag 'docker_local' +galaxy.jobs DEBUG 2024-02-23 12:54:49,311 [pN:main,p:69576,tN:MainThread] Done loading job configuration +galaxy.security.vault WARNING 2024-02-23 12:54:49,489 [pN:main,p:69576,tN:MainThread] No vault configured. We recommend defining the vault_config_file setting in galaxy.yml +galaxy.datatypes.registry DEBUG 2024-02-23 12:54:49,532 [pN:main,p:69576,tN:MainThread] Loading datatypes from /scratch/rico/galaxy/lib/galaxy/config/sample/datatypes_conf.xml.sample +galaxy.datatypes.registry DEBUG 2024-02-23 12:54:49,532 [pN:main,p:69576,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension source.h. +galaxy.datatypes.registry DEBUG 2024-02-23 12:54:49,533 [pN:main,p:69576,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension source.c. +galaxy.datatypes.registry DEBUG 2024-02-23 12:54:49,533 [pN:main,p:69576,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension source.cpp. +galaxy.datatypes.registry DEBUG 2024-02-23 12:54:49,533 [pN:main,p:69576,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension source.py. +galaxy.datatypes.registry DEBUG 2024-02-23 12:54:49,533 [pN:main,p:69576,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension source.go. +galaxy.datatypes.registry DEBUG 2024-02-23 12:54:49,533 [pN:main,p:69576,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension source.rs. +galaxy.datatypes.registry DEBUG 2024-02-23 12:54:49,533 [pN:main,p:69576,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension source.cs. +galaxy.datatypes.registry DEBUG 2024-02-23 12:54:49,533 [pN:main,p:69576,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:Binary from the datatype registry for extension hep.root. +galaxy.datatypes.registry DEBUG 2024-02-23 12:54:49,534 [pN:main,p:69576,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:JP2 from the datatype registry for extension jp2. +galaxy.datatypes.registry DEBUG 2024-02-23 12:54:49,534 [pN:main,p:69576,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:Ab1 from the datatype registry for extension ab1. +galaxy.datatypes.registry DEBUG 2024-02-23 12:54:49,534 [pN:main,p:69576,tN:MainThread] Retrieved datatype module galaxy.datatypes.assembly:Amos from the datatype registry for extension afg. +galaxy.datatypes.registry DEBUG 2024-02-23 12:54:49,535 [pN:main,p:69576,tN:MainThread] Retrieved datatype module galaxy.datatypes.goldenpath:GoldenPath from the datatype registry for extension agp. +galaxy.datatypes.registry DEBUG 2024-02-23 12:54:49,536 [pN:main,p:69576,tN:MainThread] Retrieved datatype module galaxy.datatypes.anvio:AnvioComposite from the datatype registry for extension anvio_cog_profile. +galaxy.datatypes.registry DEBUG 2024-02-23 12:54:49,536 [pN:main,p:69576,tN:MainThread] Retrieved datatype module galaxy.datatypes.anvio:AnvioComposite from the datatype registry for extension anvio_composite. +galaxy.datatypes.registry DEBUG 2024-02-23 12:54:49,536 [pN:main,p:69576,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:Data from the datatype registry for extension anvio_classifier. +galaxy.datatypes.registry DEBUG 2024-02-23 12:54:49,536 [pN:main,p:69576,tN:MainThread] Retrieved datatype module galaxy.datatypes.anvio:AnvioContigsDB from the datatype registry for extension anvio_contigs_db. +galaxy.datatypes.registry DEBUG 2024-02-23 12:54:49,536 [pN:main,p:69576,tN:MainThread] Retrieved datatype module galaxy.datatypes.anvio:AnvioDB from the datatype registry for extension anvio_db. +galaxy.datatypes.registry DEBUG 2024-02-23 12:54:49,536 [pN:main,p:69576,tN:MainThread] Retrieved datatype module galaxy.datatypes.anvio:AnvioGenomesDB from the datatype registry for extension anvio_genomes_db. +galaxy.datatypes.registry DEBUG 2024-02-23 12:54:49,537 [pN:main,p:69576,tN:MainThread] Retrieved datatype module galaxy.datatypes.anvio:AnvioPanDB from the datatype registry for extension anvio_pan_db. +galaxy.datatypes.registry DEBUG 2024-02-23 12:54:49,537 [pN:main,p:69576,tN:MainThread] Retrieved datatype module galaxy.datatypes.anvio:AnvioComposite from the datatype registry for extension anvio_pfam_profile. +galaxy.datatypes.registry DEBUG 2024-02-23 12:54:49,537 [pN:main,p:69576,tN:MainThread] Retrieved datatype module galaxy.datatypes.anvio:AnvioProfileDB from the datatype registry for extension anvio_profile_db. +galaxy.datatypes.registry DEBUG 2024-02-23 12:54:49,537 [pN:main,p:69576,tN:MainThread] Retrieved datatype module galaxy.datatypes.anvio:AnvioSamplesDB from the datatype registry for extension anvio_samples_db. +galaxy.datatypes.registry DEBUG 2024-02-23 12:54:49,537 [pN:main,p:69576,tN:MainThread] Retrieved datatype module galaxy.datatypes.text:Json from the datatype registry for extension anvio_state. +galaxy.datatypes.registry DEBUG 2024-02-23 12:54:49,537 [pN:main,p:69576,tN:MainThread] Retrieved datatype module galaxy.datatypes.anvio:AnvioStructureDB from the datatype registry for extension anvio_structure_db. +galaxy.datatypes.registry DEBUG 2024-02-23 12:54:49,537 [pN:main,p:69576,tN:MainThread] Retrieved datatype module galaxy.datatypes.tabular:TSV from the datatype registry for extension anvio_variability. +galaxy.datatypes.registry DEBUG 2024-02-23 12:54:49,537 [pN:main,p:69576,tN:MainThread] Retrieved datatype module galaxy.datatypes.text:Arff from the datatype registry for extension arff. +galaxy.datatypes.registry DEBUG 2024-02-23 12:54:49,537 [pN:main,p:69576,tN:MainThread] Retrieved datatype module galaxy.datatypes.text:Paf from the datatype registry for extension paf. +galaxy.datatypes.registry DEBUG 2024-02-23 12:54:49,538 [pN:main,p:69576,tN:MainThread] Retrieved datatype module galaxy.datatypes.text:Gfa1 from the datatype registry for extension gfa1. +galaxy.datatypes.registry DEBUG 2024-02-23 12:54:49,538 [pN:main,p:69576,tN:MainThread] Retrieved datatype module galaxy.datatypes.text:Gfa2 from the datatype registry for extension gfa2. +galaxy.datatypes.registry DEBUG 2024-02-23 12:54:49,538 [pN:main,p:69576,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:GenericAsn1 from the datatype registry for extension asn1. +galaxy.datatypes.registry DEBUG 2024-02-23 12:54:49,538 [pN:main,p:69576,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:GenericAsn1Binary from the datatype registry for extension asn1-binary. +galaxy.datatypes.registry DEBUG 2024-02-23 12:54:49,538 [pN:main,p:69576,tN:MainThread] Retrieved datatype module galaxy.datatypes.sequence:Axt from the datatype registry for extension axt. +galaxy.datatypes.registry DEBUG 2024-02-23 12:54:49,538 [pN:main,p:69576,tN:MainThread] Retrieved datatype module galaxy.datatypes.tabular:FeatureLocationIndex from the datatype registry for extension fli. +galaxy.datatypes.registry DEBUG 2024-02-23 12:54:49,538 [pN:main,p:69576,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:Bam from the datatype registry for extension bam. +galaxy.datatypes.registry DEBUG 2024-02-23 12:54:49,538 [pN:main,p:69576,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:Binary from the datatype registry for extension bai. +galaxy.datatypes.registry DEBUG 2024-02-23 12:54:49,539 [pN:main,p:69576,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:BamInputSorted from the datatype registry for extension qname_input_sorted.bam. +galaxy.datatypes.registry DEBUG 2024-02-23 12:54:49,539 [pN:main,p:69576,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:BamQuerynameSorted from the datatype registry for extension qname_sorted.bam. +galaxy.datatypes.registry DEBUG 2024-02-23 12:54:49,539 [pN:main,p:69576,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:BamNative from the datatype registry for extension unsorted.bam. +galaxy.datatypes.registry DEBUG 2024-02-23 12:54:49,539 [pN:main,p:69576,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:ProBam from the datatype registry for extension probam. +galaxy.datatypes.registry DEBUG 2024-02-23 12:54:49,539 [pN:main,p:69576,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:CRAM from the datatype registry for extension cram. +galaxy.datatypes.registry DEBUG 2024-02-23 12:54:49,539 [pN:main,p:69576,tN:MainThread] Retrieved datatype module galaxy.datatypes.interval:Bed from the datatype registry for extension bed. +galaxy.datatypes.registry DEBUG 2024-02-23 12:54:49,539 [pN:main,p:69576,tN:MainThread] Retrieved datatype module galaxy.datatypes.interval:BedGraph from the datatype registry for extension bedgraph. +galaxy.datatypes.registry DEBUG 2024-02-23 12:54:49,539 [pN:main,p:69576,tN:MainThread] Retrieved datatype module galaxy.datatypes.interval:BedStrict from the datatype registry for extension bedstrict. +galaxy.datatypes.registry DEBUG 2024-02-23 12:54:49,539 [pN:main,p:69576,tN:MainThread] Retrieved datatype module galaxy.datatypes.interval:Bed6 from the datatype registry for extension bed6. +galaxy.datatypes.registry DEBUG 2024-02-23 12:54:49,539 [pN:main,p:69576,tN:MainThread] Retrieved datatype module galaxy.datatypes.interval:Bed12 from the datatype registry for extension bed12. +galaxy.datatypes.registry DEBUG 2024-02-23 12:54:49,540 [pN:main,p:69576,tN:MainThread] Retrieved datatype module galaxy.datatypes.interval:ProBed from the datatype registry for extension probed. +galaxy.datatypes.registry DEBUG 2024-02-23 12:54:49,540 [pN:main,p:69576,tN:MainThread] Retrieved datatype module galaxy.datatypes.chrominfo:ChromInfo from the datatype registry for extension len. +galaxy.datatypes.registry DEBUG 2024-02-23 12:54:49,540 [pN:main,p:69576,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:DAA from the datatype registry for extension daa. +galaxy.datatypes.registry DEBUG 2024-02-23 12:54:49,540 [pN:main,p:69576,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:RMA6 from the datatype registry for extension rma6. +galaxy.datatypes.registry DEBUG 2024-02-23 12:54:49,540 [pN:main,p:69576,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:DMND from the datatype registry for extension dmnd. +galaxy.datatypes.registry DEBUG 2024-02-23 12:54:49,541 [pN:main,p:69576,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:Parquet from the datatype registry for extension parquet. +galaxy.datatypes.registry DEBUG 2024-02-23 12:54:49,541 [pN:main,p:69576,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:Idat from the datatype registry for extension idat. +galaxy.datatypes.registry DEBUG 2024-02-23 12:54:49,541 [pN:main,p:69576,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:BigBed from the datatype registry for extension bigbed. +galaxy.datatypes.registry DEBUG 2024-02-23 12:54:49,541 [pN:main,p:69576,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:BigWig from the datatype registry for extension bigwig. +galaxy.datatypes.registry DEBUG 2024-02-23 12:54:49,541 [pN:main,p:69576,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:Binary from the datatype registry for extension cxb. +galaxy.datatypes.registry DEBUG 2024-02-23 12:54:49,541 [pN:main,p:69576,tN:MainThread] Retrieved datatype module galaxy.datatypes.interval:ChromatinInteractions from the datatype registry for extension chrint. +galaxy.datatypes.registry DEBUG 2024-02-23 12:54:49,541 [pN:main,p:69576,tN:MainThread] Retrieved datatype module galaxy.datatypes.tabular:CSV from the datatype registry for extension csv. +galaxy.datatypes.registry DEBUG 2024-02-23 12:54:49,541 [pN:main,p:69576,tN:MainThread] Retrieved datatype module galaxy.datatypes.tabular:TSV from the datatype registry for extension tsv. +galaxy.datatypes.registry DEBUG 2024-02-23 12:54:49,541 [pN:main,p:69576,tN:MainThread] Retrieved datatype module galaxy.datatypes.tabular:TSV from the datatype registry for extension intermine_tabular. +galaxy.datatypes.registry DEBUG 2024-02-23 12:54:49,542 [pN:main,p:69576,tN:MainThread] Retrieved datatype module galaxy.datatypes.interval:CustomTrack from the datatype registry for extension customtrack. +galaxy.datatypes.registry DEBUG 2024-02-23 12:54:49,542 [pN:main,p:69576,tN:MainThread] Retrieved datatype module galaxy.datatypes.ngsindex:BowtieColorIndex from the datatype registry for extension bowtie_color_index. +galaxy.datatypes.registry DEBUG 2024-02-23 12:54:49,542 [pN:main,p:69576,tN:MainThread] Retrieved datatype module galaxy.datatypes.ngsindex:BowtieBaseIndex from the datatype registry for extension bowtie_base_index. +galaxy.datatypes.registry DEBUG 2024-02-23 12:54:49,542 [pN:main,p:69576,tN:MainThread] Retrieved datatype module galaxy.datatypes.sequence:csFasta from the datatype registry for extension csfasta. +galaxy.datatypes.registry DEBUG 2024-02-23 12:54:49,542 [pN:main,p:69576,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:Data from the datatype registry for extension data. +galaxy.datatypes.registry DEBUG 2024-02-23 12:54:49,542 [pN:main,p:69576,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:Binary from the datatype registry for extension gz. +galaxy.datatypes.registry DEBUG 2024-02-23 12:54:49,543 [pN:main,p:69576,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:Binary from the datatype registry for extension binary. +galaxy.datatypes.registry DEBUG 2024-02-23 12:54:49,543 [pN:main,p:69576,tN:MainThread] Retrieved datatype module galaxy.datatypes.text:Json from the datatype registry for extension d3_hierarchy. +galaxy.datatypes.registry DEBUG 2024-02-23 12:54:49,543 [pN:main,p:69576,tN:MainThread] Retrieved datatype module galaxy.datatypes.text:ImgtJson from the datatype registry for extension imgt.json. +galaxy.datatypes.registry DEBUG 2024-02-23 12:54:49,543 [pN:main,p:69576,tN:MainThread] Retrieved datatype module galaxy.datatypes.text:GeoJson from the datatype registry for extension geojson. +galaxy.datatypes.registry DEBUG 2024-02-23 12:54:49,543 [pN:main,p:69576,tN:MainThread] Retrieved datatype module galaxy.datatypes.text:Json from the datatype registry for extension data_manager_json. +galaxy.datatypes.registry DEBUG 2024-02-23 12:54:49,543 [pN:main,p:69576,tN:MainThread] Retrieved datatype module galaxy.datatypes.sequence:DotBracket from the datatype registry for extension dbn. +galaxy.datatypes.registry DEBUG 2024-02-23 12:54:49,543 [pN:main,p:69576,tN:MainThread] Retrieved datatype module galaxy.datatypes.tabular:Tabular from the datatype registry for extension fai. +galaxy.datatypes.registry DEBUG 2024-02-23 12:54:49,543 [pN:main,p:69576,tN:MainThread] Retrieved datatype module galaxy.datatypes.sequence:Fasta from the datatype registry for extension fasta. +galaxy.datatypes.registry DEBUG 2024-02-23 12:54:49,544 [pN:main,p:69576,tN:MainThread] Retrieved datatype module galaxy.datatypes.sequence:Fastg from the datatype registry for extension fastg. +galaxy.datatypes.registry DEBUG 2024-02-23 12:54:49,544 [pN:main,p:69576,tN:MainThread] Retrieved datatype module galaxy.datatypes.sequence:Fastq from the datatype registry for extension fastq. +galaxy.datatypes.registry DEBUG 2024-02-23 12:54:49,544 [pN:main,p:69576,tN:MainThread] Retrieved datatype module galaxy.datatypes.sequence:FastqSanger from the datatype registry for extension fastqsanger. +galaxy.datatypes.registry DEBUG 2024-02-23 12:54:49,544 [pN:main,p:69576,tN:MainThread] Retrieved datatype module galaxy.datatypes.sequence:FastqSolexa from the datatype registry for extension fastqsolexa. +galaxy.datatypes.registry DEBUG 2024-02-23 12:54:49,544 [pN:main,p:69576,tN:MainThread] Retrieved datatype module galaxy.datatypes.sequence:FastqCSSanger from the datatype registry for extension fastqcssanger. +galaxy.datatypes.registry DEBUG 2024-02-23 12:54:49,545 [pN:main,p:69576,tN:MainThread] Retrieved datatype module galaxy.datatypes.sequence:FastqIllumina from the datatype registry for extension fastqillumina. +galaxy.datatypes.registry DEBUG 2024-02-23 12:54:49,545 [pN:main,p:69576,tN:MainThread] Retrieved datatype module galaxy.datatypes.sequence:SequenceSplitLocations from the datatype registry for extension fqtoc. +galaxy.datatypes.registry DEBUG 2024-02-23 12:54:49,545 [pN:main,p:69576,tN:MainThread] Retrieved datatype module galaxy.datatypes.tabular:Eland from the datatype registry for extension eland. +galaxy.datatypes.registry DEBUG 2024-02-23 12:54:49,545 [pN:main,p:69576,tN:MainThread] Retrieved datatype module galaxy.datatypes.tabular:ElandMulti from the datatype registry for extension elandmulti. +galaxy.datatypes.registry DEBUG 2024-02-23 12:54:49,545 [pN:main,p:69576,tN:MainThread] Retrieved datatype module galaxy.datatypes.tracks:GeneTrack from the datatype registry for extension genetrack. +galaxy.datatypes.registry DEBUG 2024-02-23 12:54:49,545 [pN:main,p:69576,tN:MainThread] Retrieved datatype module galaxy.datatypes.interval:Gff from the datatype registry for extension gff. +galaxy.datatypes.registry DEBUG 2024-02-23 12:54:49,545 [pN:main,p:69576,tN:MainThread] Retrieved datatype module galaxy.datatypes.interval:Gff3 from the datatype registry for extension gff3. +galaxy.datatypes.registry DEBUG 2024-02-23 12:54:49,546 [pN:main,p:69576,tN:MainThread] Retrieved datatype module galaxy.datatypes.images:Gif from the datatype registry for extension gif. +galaxy.datatypes.registry DEBUG 2024-02-23 12:54:49,546 [pN:main,p:69576,tN:MainThread] Retrieved datatype module galaxy.datatypes.images:Gmaj from the datatype registry for extension gmaj.zip. +galaxy.datatypes.registry DEBUG 2024-02-23 12:54:49,546 [pN:main,p:69576,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension graph_dot. +galaxy.datatypes.registry DEBUG 2024-02-23 12:54:49,546 [pN:main,p:69576,tN:MainThread] Retrieved datatype module galaxy.datatypes.interval:Gtf from the datatype registry for extension gtf. +galaxy.datatypes.registry DEBUG 2024-02-23 12:54:49,546 [pN:main,p:69576,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:Binary from the datatype registry for extension toolshed.gz. +galaxy.datatypes.registry DEBUG 2024-02-23 12:54:49,546 [pN:main,p:69576,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:Binary from the datatype registry for extension hdf4. +galaxy.datatypes.registry DEBUG 2024-02-23 12:54:49,547 [pN:main,p:69576,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:H5 from the datatype registry for extension h5. +galaxy.datatypes.registry DEBUG 2024-02-23 12:54:49,547 [pN:main,p:69576,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:H5 from the datatype registry for extension scool. +galaxy.datatypes.registry DEBUG 2024-02-23 12:54:49,547 [pN:main,p:69576,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:Grib from the datatype registry for extension grib. +galaxy.datatypes.registry DEBUG 2024-02-23 12:54:49,547 [pN:main,p:69576,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:Loom from the datatype registry for extension loom. +galaxy.datatypes.registry DEBUG 2024-02-23 12:54:49,547 [pN:main,p:69576,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:Anndata from the datatype registry for extension h5ad. +galaxy.datatypes.registry DEBUG 2024-02-23 12:54:49,547 [pN:main,p:69576,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:Visium from the datatype registry for extension visium.tar.gz. +galaxy.datatypes.registry DEBUG 2024-02-23 12:54:49,547 [pN:main,p:69576,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:H5 from the datatype registry for extension mz5. +galaxy.datatypes.registry DEBUG 2024-02-23 12:54:49,547 [pN:main,p:69576,tN:MainThread] Retrieved datatype module galaxy.datatypes.text:Json from the datatype registry for extension hyphy_results.json. +galaxy.datatypes.registry DEBUG 2024-02-23 12:54:49,547 [pN:main,p:69576,tN:MainThread] Retrieved datatype module galaxy.datatypes.text:Json from the datatype registry for extension hivtrace. +galaxy.datatypes.registry DEBUG 2024-02-23 12:54:49,547 [pN:main,p:69576,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:Cool from the datatype registry for extension cool. +galaxy.datatypes.registry DEBUG 2024-02-23 12:54:49,548 [pN:main,p:69576,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:MCool from the datatype registry for extension mcool. +galaxy.datatypes.registry DEBUG 2024-02-23 12:54:49,548 [pN:main,p:69576,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:H5MLM from the datatype registry for extension h5mlm. +galaxy.datatypes.registry DEBUG 2024-02-23 12:54:49,548 [pN:main,p:69576,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:LudwigModel from the datatype registry for extension ludwig_model. +galaxy.datatypes.registry DEBUG 2024-02-23 12:54:49,548 [pN:main,p:69576,tN:MainThread] Retrieved datatype module galaxy.datatypes.text:Html from the datatype registry for extension html. +galaxy.datatypes.registry DEBUG 2024-02-23 12:54:49,548 [pN:main,p:69576,tN:MainThread] Retrieved datatype module galaxy.datatypes.text:Html from the datatype registry for extension ludwig_report.html. +galaxy.datatypes.registry DEBUG 2024-02-23 12:54:49,548 [pN:main,p:69576,tN:MainThread] Retrieved datatype module galaxy.datatypes.interval:Interval from the datatype registry for extension interval. +galaxy.datatypes.registry DEBUG 2024-02-23 12:54:49,548 [pN:main,p:69576,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:Binary from the datatype registry for extension jellyfish. +galaxy.datatypes.registry DEBUG 2024-02-23 12:54:49,548 [pN:main,p:69576,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:Binary from the datatype registry for extension ktab. +galaxy.datatypes.registry DEBUG 2024-02-23 12:54:49,548 [pN:main,p:69576,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:Binary from the datatype registry for extension hist. +galaxy.datatypes.registry DEBUG 2024-02-23 12:54:49,549 [pN:main,p:69576,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:Binary from the datatype registry for extension prof. +galaxy.datatypes.registry DEBUG 2024-02-23 12:54:49,630 [pN:main,p:69576,tN:MainThread] Retrieved datatype module galaxy.datatypes.isa:IsaTab from the datatype registry for extension isa-tab. +galaxy.datatypes.registry DEBUG 2024-02-23 12:54:49,630 [pN:main,p:69576,tN:MainThread] Retrieved datatype module galaxy.datatypes.isa:IsaJson from the datatype registry for extension isa-json. +galaxy.datatypes.registry DEBUG 2024-02-23 12:54:49,630 [pN:main,p:69576,tN:MainThread] Retrieved datatype module galaxy.datatypes.tabular:Tabular from the datatype registry for extension picard_interval_list. +galaxy.datatypes.registry DEBUG 2024-02-23 12:54:49,631 [pN:main,p:69576,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension gatk_interval. +galaxy.datatypes.registry DEBUG 2024-02-23 12:54:49,631 [pN:main,p:69576,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension gatk_report. +galaxy.datatypes.registry DEBUG 2024-02-23 12:54:49,631 [pN:main,p:69576,tN:MainThread] Retrieved datatype module galaxy.datatypes.tabular:Tabular from the datatype registry for extension gatk_dbsnp. +galaxy.datatypes.registry DEBUG 2024-02-23 12:54:49,631 [pN:main,p:69576,tN:MainThread] Retrieved datatype module galaxy.datatypes.tabular:Tabular from the datatype registry for extension gatk_tranche. +galaxy.datatypes.registry DEBUG 2024-02-23 12:54:49,631 [pN:main,p:69576,tN:MainThread] Retrieved datatype module galaxy.datatypes.tabular:Tabular from the datatype registry for extension gatk_recal. +galaxy.datatypes.registry DEBUG 2024-02-23 12:54:49,631 [pN:main,p:69576,tN:MainThread] Retrieved datatype module galaxy.datatypes.tabular:Tabular from the datatype registry for extension cnn. +galaxy.datatypes.registry DEBUG 2024-02-23 12:54:49,631 [pN:main,p:69576,tN:MainThread] Retrieved datatype module galaxy.datatypes.tabular:Tabular from the datatype registry for extension cns. +galaxy.datatypes.registry DEBUG 2024-02-23 12:54:49,632 [pN:main,p:69576,tN:MainThread] Retrieved datatype module galaxy.datatypes.tabular:Tabular from the datatype registry for extension cnr. +galaxy.datatypes.registry DEBUG 2024-02-23 12:54:49,632 [pN:main,p:69576,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension hhr. +galaxy.datatypes.registry DEBUG 2024-02-23 12:54:49,632 [pN:main,p:69576,tN:MainThread] Retrieved datatype module galaxy.datatypes.images:Jpg from the datatype registry for extension jpg. +galaxy.datatypes.registry DEBUG 2024-02-23 12:54:49,632 [pN:main,p:69576,tN:MainThread] Retrieved datatype module galaxy.datatypes.images:Tiff from the datatype registry for extension tiff. +galaxy.datatypes.registry DEBUG 2024-02-23 12:54:49,632 [pN:main,p:69576,tN:MainThread] Retrieved datatype module galaxy.datatypes.images:Tiff from the datatype registry for extension tf2. +galaxy.datatypes.registry DEBUG 2024-02-23 12:54:49,632 [pN:main,p:69576,tN:MainThread] Retrieved datatype module galaxy.datatypes.images:Tiff from the datatype registry for extension tf8. +galaxy.datatypes.registry DEBUG 2024-02-23 12:54:49,632 [pN:main,p:69576,tN:MainThread] Retrieved datatype module galaxy.datatypes.images:Tiff from the datatype registry for extension btf. +galaxy.datatypes.registry DEBUG 2024-02-23 12:54:49,632 [pN:main,p:69576,tN:MainThread] Retrieved datatype module galaxy.datatypes.images:Tiff from the datatype registry for extension tif. +galaxy.datatypes.registry DEBUG 2024-02-23 12:54:49,633 [pN:main,p:69576,tN:MainThread] Retrieved datatype module galaxy.datatypes.images:Tiff from the datatype registry for extension svs. +galaxy.datatypes.registry DEBUG 2024-02-23 12:54:49,633 [pN:main,p:69576,tN:MainThread] Retrieved datatype module galaxy.datatypes.images:Tiff from the datatype registry for extension scn. +galaxy.datatypes.registry DEBUG 2024-02-23 12:54:49,633 [pN:main,p:69576,tN:MainThread] Retrieved datatype module galaxy.datatypes.images:Tiff from the datatype registry for extension bif. +galaxy.datatypes.registry DEBUG 2024-02-23 12:54:49,633 [pN:main,p:69576,tN:MainThread] Retrieved datatype module galaxy.datatypes.images:OMETiff from the datatype registry for extension ome.tiff. +galaxy.datatypes.registry DEBUG 2024-02-23 12:54:49,633 [pN:main,p:69576,tN:MainThread] Retrieved datatype module galaxy.datatypes.images:Hamamatsu from the datatype registry for extension vms. +galaxy.datatypes.registry DEBUG 2024-02-23 12:54:49,633 [pN:main,p:69576,tN:MainThread] Retrieved datatype module galaxy.datatypes.images:Hamamatsu from the datatype registry for extension vmu. +galaxy.datatypes.registry DEBUG 2024-02-23 12:54:49,633 [pN:main,p:69576,tN:MainThread] Retrieved datatype module galaxy.datatypes.images:Hamamatsu from the datatype registry for extension ndpi. +galaxy.datatypes.registry DEBUG 2024-02-23 12:54:49,633 [pN:main,p:69576,tN:MainThread] Retrieved datatype module galaxy.datatypes.images:Mirax from the datatype registry for extension mrxs. +galaxy.datatypes.registry DEBUG 2024-02-23 12:54:49,633 [pN:main,p:69576,tN:MainThread] Retrieved datatype module galaxy.datatypes.images:Sakura from the datatype registry for extension svslide. +galaxy.datatypes.registry DEBUG 2024-02-23 12:54:49,634 [pN:main,p:69576,tN:MainThread] Retrieved datatype module galaxy.datatypes.images:Bmp from the datatype registry for extension bmp. +galaxy.datatypes.registry DEBUG 2024-02-23 12:54:49,634 [pN:main,p:69576,tN:MainThread] Retrieved datatype module galaxy.datatypes.images:Im from the datatype registry for extension im. +galaxy.datatypes.registry DEBUG 2024-02-23 12:54:49,634 [pN:main,p:69576,tN:MainThread] Retrieved datatype module galaxy.datatypes.images:Pcd from the datatype registry for extension pcd. +galaxy.datatypes.registry DEBUG 2024-02-23 12:54:49,634 [pN:main,p:69576,tN:MainThread] Retrieved datatype module galaxy.datatypes.images:Pcx from the datatype registry for extension pcx. +galaxy.datatypes.registry DEBUG 2024-02-23 12:54:49,634 [pN:main,p:69576,tN:MainThread] Retrieved datatype module galaxy.datatypes.images:Ppm from the datatype registry for extension ppm. +galaxy.datatypes.registry DEBUG 2024-02-23 12:54:49,634 [pN:main,p:69576,tN:MainThread] Retrieved datatype module galaxy.datatypes.images:Psd from the datatype registry for extension psd. +galaxy.datatypes.registry DEBUG 2024-02-23 12:54:49,634 [pN:main,p:69576,tN:MainThread] Retrieved datatype module galaxy.datatypes.images:Xbm from the datatype registry for extension xbm. +galaxy.datatypes.registry DEBUG 2024-02-23 12:54:49,634 [pN:main,p:69576,tN:MainThread] Retrieved datatype module galaxy.datatypes.images:Xpm from the datatype registry for extension xpm. +galaxy.datatypes.registry DEBUG 2024-02-23 12:54:49,634 [pN:main,p:69576,tN:MainThread] Retrieved datatype module galaxy.datatypes.images:Rgb from the datatype registry for extension rgb. +galaxy.datatypes.registry DEBUG 2024-02-23 12:54:49,634 [pN:main,p:69576,tN:MainThread] Retrieved datatype module galaxy.datatypes.images:Pbm from the datatype registry for extension pbm. +galaxy.datatypes.registry DEBUG 2024-02-23 12:54:49,634 [pN:main,p:69576,tN:MainThread] Retrieved datatype module galaxy.datatypes.images:Pgm from the datatype registry for extension pgm. +galaxy.datatypes.registry DEBUG 2024-02-23 12:54:49,635 [pN:main,p:69576,tN:MainThread] Retrieved datatype module galaxy.datatypes.images:Nrrd from the datatype registry for extension nrrd. +galaxy.datatypes.registry DEBUG 2024-02-23 12:54:49,635 [pN:main,p:69576,tN:MainThread] Retrieved datatype module galaxy.datatypes.images:Nrrd from the datatype registry for extension nhdr. +galaxy.datatypes.registry DEBUG 2024-02-23 12:54:49,635 [pN:main,p:69576,tN:MainThread] Retrieved datatype module galaxy.datatypes.sequence:RNADotPlotMatrix from the datatype registry for extension rna_eps. +galaxy.datatypes.registry DEBUG 2024-02-23 12:54:49,635 [pN:main,p:69576,tN:MainThread] Retrieved datatype module galaxy.datatypes.qiime2:QIIME2Artifact from the datatype registry for extension qza. +galaxy.datatypes.registry DEBUG 2024-02-23 12:54:49,636 [pN:main,p:69576,tN:MainThread] Retrieved datatype module galaxy.datatypes.qiime2:QIIME2Visualization from the datatype registry for extension qzv. +galaxy.datatypes.registry DEBUG 2024-02-23 12:54:49,636 [pN:main,p:69576,tN:MainThread] Retrieved datatype module galaxy.datatypes.qiime2:QIIME2Metadata from the datatype registry for extension qiime2.tabular. +galaxy.datatypes.registry DEBUG 2024-02-23 12:54:49,636 [pN:main,p:69576,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:CompressedZipArchive from the datatype registry for extension zip. +galaxy.datatypes.registry DEBUG 2024-02-23 12:54:49,636 [pN:main,p:69576,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:CompressedZipArchive from the datatype registry for extension ncbi_genome_dataset.zip. +galaxy.datatypes.registry DEBUG 2024-02-23 12:54:49,636 [pN:main,p:69576,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:CompressedArchive from the datatype registry for extension tar. +galaxy.datatypes.registry DEBUG 2024-02-23 12:54:49,636 [pN:main,p:69576,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:Directory from the datatype registry for extension directory. +galaxy.datatypes.registry DEBUG 2024-02-23 12:54:49,636 [pN:main,p:69576,tN:MainThread] Retrieved datatype module galaxy.datatypes.text:Yaml from the datatype registry for extension yaml. +galaxy.datatypes.registry DEBUG 2024-02-23 12:54:49,636 [pN:main,p:69576,tN:MainThread] Retrieved datatype module galaxy.datatypes.tabular:Tabular from the datatype registry for extension mrm. +galaxy.datatypes.registry DEBUG 2024-02-23 12:54:49,639 [pN:main,p:69576,tN:MainThread] Retrieved datatype module galaxy.datatypes.proteomics:Dta from the datatype registry for extension dta. +galaxy.datatypes.registry DEBUG 2024-02-23 12:54:49,639 [pN:main,p:69576,tN:MainThread] Retrieved datatype module galaxy.datatypes.proteomics:Dta2d from the datatype registry for extension dta2d. +galaxy.datatypes.registry DEBUG 2024-02-23 12:54:49,639 [pN:main,p:69576,tN:MainThread] Retrieved datatype module galaxy.datatypes.proteomics:Edta from the datatype registry for extension edta. +galaxy.datatypes.registry DEBUG 2024-02-23 12:54:49,639 [pN:main,p:69576,tN:MainThread] Retrieved datatype module galaxy.datatypes.proteomics:PepXml from the datatype registry for extension pepxml. +galaxy.datatypes.registry DEBUG 2024-02-23 12:54:49,639 [pN:main,p:69576,tN:MainThread] Retrieved datatype module galaxy.datatypes.proteomics:PepXml from the datatype registry for extension raw_pepxml. +galaxy.datatypes.registry DEBUG 2024-02-23 12:54:49,639 [pN:main,p:69576,tN:MainThread] Retrieved datatype module galaxy.datatypes.proteomics:PepXml from the datatype registry for extension peptideprophet_pepxml. +galaxy.datatypes.registry DEBUG 2024-02-23 12:54:49,639 [pN:main,p:69576,tN:MainThread] Retrieved datatype module galaxy.datatypes.proteomics:PepXml from the datatype registry for extension interprophet_pepxml. +galaxy.datatypes.registry DEBUG 2024-02-23 12:54:49,639 [pN:main,p:69576,tN:MainThread] Retrieved datatype module galaxy.datatypes.proteomics:ProtXML from the datatype registry for extension protxml. +galaxy.datatypes.registry DEBUG 2024-02-23 12:54:49,640 [pN:main,p:69576,tN:MainThread] Retrieved datatype module galaxy.datatypes.proteomics:ParamXml from the datatype registry for extension paramxml. +galaxy.datatypes.registry DEBUG 2024-02-23 12:54:49,640 [pN:main,p:69576,tN:MainThread] Retrieved datatype module galaxy.datatypes.proteomics:Kroenik from the datatype registry for extension kroenik. +galaxy.datatypes.registry DEBUG 2024-02-23 12:54:49,640 [pN:main,p:69576,tN:MainThread] Retrieved datatype module galaxy.datatypes.proteomics:PepList from the datatype registry for extension peplist. +galaxy.datatypes.registry DEBUG 2024-02-23 12:54:49,640 [pN:main,p:69576,tN:MainThread] Retrieved datatype module galaxy.datatypes.proteomics:PSMS from the datatype registry for extension psms. +galaxy.datatypes.registry DEBUG 2024-02-23 12:54:49,640 [pN:main,p:69576,tN:MainThread] Retrieved datatype module galaxy.datatypes.proteomics:PepXmlReport from the datatype registry for extension pepxml.tsv. +galaxy.datatypes.registry DEBUG 2024-02-23 12:54:49,640 [pN:main,p:69576,tN:MainThread] Retrieved datatype module galaxy.datatypes.proteomics:ProtXmlReport from the datatype registry for extension protxml.tsv. +galaxy.datatypes.registry DEBUG 2024-02-23 12:54:49,640 [pN:main,p:69576,tN:MainThread] Retrieved datatype module galaxy.datatypes.proteomics:MascotDat from the datatype registry for extension mascotdat. +galaxy.datatypes.registry DEBUG 2024-02-23 12:54:49,640 [pN:main,p:69576,tN:MainThread] Retrieved datatype module galaxy.datatypes.proteomics:MzIdentML from the datatype registry for extension mzid. +galaxy.datatypes.registry DEBUG 2024-02-23 12:54:49,640 [pN:main,p:69576,tN:MainThread] Retrieved datatype module galaxy.datatypes.proteomics:IdXML from the datatype registry for extension idxml. +galaxy.datatypes.registry DEBUG 2024-02-23 12:54:49,640 [pN:main,p:69576,tN:MainThread] Retrieved datatype module galaxy.datatypes.proteomics:TandemXML from the datatype registry for extension tandem. +galaxy.datatypes.registry DEBUG 2024-02-23 12:54:49,640 [pN:main,p:69576,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension sirius.ms. +galaxy.datatypes.registry DEBUG 2024-02-23 12:54:49,641 [pN:main,p:69576,tN:MainThread] Retrieved datatype module galaxy.datatypes.proteomics:ThermoRAW from the datatype registry for extension thermo.raw. +galaxy.datatypes.registry DEBUG 2024-02-23 12:54:49,641 [pN:main,p:69576,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:BafTar from the datatype registry for extension brukerbaf.d.tar. +galaxy.datatypes.registry DEBUG 2024-02-23 12:54:49,641 [pN:main,p:69576,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:YepTar from the datatype registry for extension agilentbrukeryep.d.tar. +galaxy.datatypes.registry DEBUG 2024-02-23 12:54:49,641 [pN:main,p:69576,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:TdfTar from the datatype registry for extension brukertdf.d.tar. +galaxy.datatypes.registry DEBUG 2024-02-23 12:54:49,641 [pN:main,p:69576,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:MassHunterTar from the datatype registry for extension agilentmasshunter.d.tar. +galaxy.datatypes.registry DEBUG 2024-02-23 12:54:49,641 [pN:main,p:69576,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:MassLynxTar from the datatype registry for extension watersmasslynx.raw.tar. +galaxy.datatypes.registry DEBUG 2024-02-23 12:54:49,641 [pN:main,p:69576,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:WiffTar from the datatype registry for extension wiff.tar. +galaxy.datatypes.registry DEBUG 2024-02-23 12:54:49,641 [pN:main,p:69576,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:Wiff2Tar from the datatype registry for extension wiff2.tar. +galaxy.datatypes.registry DEBUG 2024-02-23 12:54:49,641 [pN:main,p:69576,tN:MainThread] Retrieved datatype module galaxy.datatypes.proteomics:MascotXML from the datatype registry for extension mascotxml. +galaxy.datatypes.registry DEBUG 2024-02-23 12:54:49,641 [pN:main,p:69576,tN:MainThread] Retrieved datatype module galaxy.datatypes.proteomics:MzTab from the datatype registry for extension mztab. +galaxy.datatypes.registry DEBUG 2024-02-23 12:54:49,642 [pN:main,p:69576,tN:MainThread] Retrieved datatype module galaxy.datatypes.proteomics:MzTab2 from the datatype registry for extension mztab2. +galaxy.datatypes.registry DEBUG 2024-02-23 12:54:49,642 [pN:main,p:69576,tN:MainThread] Retrieved datatype module galaxy.datatypes.proteomics:MzML from the datatype registry for extension mzml. +galaxy.datatypes.registry DEBUG 2024-02-23 12:54:49,642 [pN:main,p:69576,tN:MainThread] Retrieved datatype module galaxy.datatypes.proteomics:NmrML from the datatype registry for extension nmrml. +galaxy.datatypes.registry DEBUG 2024-02-23 12:54:49,642 [pN:main,p:69576,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:Meryldb from the datatype registry for extension meryldb. +galaxy.datatypes.registry DEBUG 2024-02-23 12:54:49,642 [pN:main,p:69576,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:Bref3 from the datatype registry for extension bref3. +galaxy.datatypes.registry DEBUG 2024-02-23 12:54:49,642 [pN:main,p:69576,tN:MainThread] Retrieved datatype module galaxy.datatypes.proteomics:Mgf from the datatype registry for extension mgf. +galaxy.datatypes.registry DEBUG 2024-02-23 12:54:49,642 [pN:main,p:69576,tN:MainThread] Retrieved datatype module galaxy.datatypes.proteomics:Wiff from the datatype registry for extension wiff. +galaxy.datatypes.registry DEBUG 2024-02-23 12:54:49,642 [pN:main,p:69576,tN:MainThread] Retrieved datatype module galaxy.datatypes.proteomics:Wiff2 from the datatype registry for extension wiff2. +galaxy.datatypes.registry DEBUG 2024-02-23 12:54:49,642 [pN:main,p:69576,tN:MainThread] Retrieved datatype module galaxy.datatypes.proteomics:MzXML from the datatype registry for extension mzxml. +galaxy.datatypes.registry DEBUG 2024-02-23 12:54:49,642 [pN:main,p:69576,tN:MainThread] Retrieved datatype module galaxy.datatypes.proteomics:MzData from the datatype registry for extension mzdata. +galaxy.datatypes.registry DEBUG 2024-02-23 12:54:49,643 [pN:main,p:69576,tN:MainThread] Retrieved datatype module galaxy.datatypes.proteomics:Ms2 from the datatype registry for extension ms2. +galaxy.datatypes.registry DEBUG 2024-02-23 12:54:49,643 [pN:main,p:69576,tN:MainThread] Retrieved datatype module galaxy.datatypes.proteomics:MzQuantML from the datatype registry for extension mzq. +galaxy.datatypes.registry DEBUG 2024-02-23 12:54:49,643 [pN:main,p:69576,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:SQlite from the datatype registry for extension sqlite. +galaxy.datatypes.registry DEBUG 2024-02-23 12:54:49,643 [pN:main,p:69576,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:MzSQlite from the datatype registry for extension mz.sqlite. +galaxy.datatypes.registry DEBUG 2024-02-23 12:54:49,643 [pN:main,p:69576,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:OSW from the datatype registry for extension osw. +galaxy.datatypes.registry DEBUG 2024-02-23 12:54:49,643 [pN:main,p:69576,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:PQP from the datatype registry for extension pqp. +galaxy.datatypes.registry DEBUG 2024-02-23 12:54:49,643 [pN:main,p:69576,tN:MainThread] Retrieved datatype module galaxy.datatypes.proteomics:TraML from the datatype registry for extension traml. +galaxy.datatypes.registry DEBUG 2024-02-23 12:54:49,643 [pN:main,p:69576,tN:MainThread] Retrieved datatype module galaxy.datatypes.proteomics:TrafoXML from the datatype registry for extension trafoxml. +galaxy.datatypes.registry DEBUG 2024-02-23 12:54:49,643 [pN:main,p:69576,tN:MainThread] Retrieved datatype module galaxy.datatypes.proteomics:FeatureXML from the datatype registry for extension featurexml. +galaxy.datatypes.registry DEBUG 2024-02-23 12:54:49,643 [pN:main,p:69576,tN:MainThread] Retrieved datatype module galaxy.datatypes.proteomics:ConsensusXML from the datatype registry for extension consensusxml. +galaxy.datatypes.registry DEBUG 2024-02-23 12:54:49,644 [pN:main,p:69576,tN:MainThread] Retrieved datatype module galaxy.datatypes.proteomics:UniProtXML from the datatype registry for extension uniprotxml. +galaxy.datatypes.registry DEBUG 2024-02-23 12:54:49,644 [pN:main,p:69576,tN:MainThread] Retrieved datatype module galaxy.datatypes.proteomics:XquestXML from the datatype registry for extension xquest.xml. +galaxy.datatypes.registry DEBUG 2024-02-23 12:54:49,644 [pN:main,p:69576,tN:MainThread] Retrieved datatype module galaxy.datatypes.proteomics:XquestSpecXML from the datatype registry for extension spec.xml. +galaxy.datatypes.registry DEBUG 2024-02-23 12:54:49,644 [pN:main,p:69576,tN:MainThread] Retrieved datatype module galaxy.datatypes.proteomics:QCML from the datatype registry for extension qcml. +galaxy.datatypes.registry DEBUG 2024-02-23 12:54:49,644 [pN:main,p:69576,tN:MainThread] Retrieved datatype module galaxy.datatypes.text:Json from the datatype registry for extension mzqc. +galaxy.datatypes.registry DEBUG 2024-02-23 12:54:49,644 [pN:main,p:69576,tN:MainThread] Retrieved datatype module galaxy.datatypes.proteomics:Msp from the datatype registry for extension msp. +galaxy.datatypes.registry DEBUG 2024-02-23 12:54:49,644 [pN:main,p:69576,tN:MainThread] Retrieved datatype module galaxy.datatypes.proteomics:SPLibNoIndex from the datatype registry for extension splib_noindex. +galaxy.datatypes.registry DEBUG 2024-02-23 12:54:49,644 [pN:main,p:69576,tN:MainThread] Retrieved datatype module galaxy.datatypes.proteomics:SPLib from the datatype registry for extension splib. +galaxy.datatypes.registry DEBUG 2024-02-23 12:54:49,644 [pN:main,p:69576,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:BlibSQlite from the datatype registry for extension blib. +galaxy.datatypes.registry DEBUG 2024-02-23 12:54:49,644 [pN:main,p:69576,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:DlibSQlite from the datatype registry for extension dlib. +galaxy.datatypes.registry DEBUG 2024-02-23 12:54:49,645 [pN:main,p:69576,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:ElibSQlite from the datatype registry for extension elib. +galaxy.datatypes.registry DEBUG 2024-02-23 12:54:49,645 [pN:main,p:69576,tN:MainThread] Retrieved datatype module galaxy.datatypes.proteomics:XHunterAslFormat from the datatype registry for extension hlf. +galaxy.datatypes.registry DEBUG 2024-02-23 12:54:49,645 [pN:main,p:69576,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:IdpDB from the datatype registry for extension idpdb. +galaxy.datatypes.registry DEBUG 2024-02-23 12:54:49,645 [pN:main,p:69576,tN:MainThread] Retrieved datatype module galaxy.datatypes.proteomics:Sf3 from the datatype registry for extension sf3. +galaxy.datatypes.registry DEBUG 2024-02-23 12:54:49,645 [pN:main,p:69576,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:Binary from the datatype registry for extension cps. +galaxy.datatypes.registry DEBUG 2024-02-23 12:54:49,645 [pN:main,p:69576,tN:MainThread] Retrieved datatype module galaxy.datatypes.tabular:ConnectivityTable from the datatype registry for extension ct. +galaxy.datatypes.registry DEBUG 2024-02-23 12:54:49,645 [pN:main,p:69576,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:PostgresqlArchive from the datatype registry for extension postgresql. +galaxy.datatypes.registry DEBUG 2024-02-23 12:54:49,645 [pN:main,p:69576,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:MongoDBArchive from the datatype registry for extension mongodb. +galaxy.datatypes.registry DEBUG 2024-02-23 12:54:49,645 [pN:main,p:69576,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:GeneNoteBook from the datatype registry for extension genenotebook. +galaxy.datatypes.registry DEBUG 2024-02-23 12:54:49,645 [pN:main,p:69576,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:SearchGuiArchive from the datatype registry for extension searchgui_archive. +galaxy.datatypes.registry DEBUG 2024-02-23 12:54:49,645 [pN:main,p:69576,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:Fast5Archive from the datatype registry for extension fast5.tar. +galaxy.datatypes.registry DEBUG 2024-02-23 12:54:49,646 [pN:main,p:69576,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:Fast5ArchiveGz from the datatype registry for extension fast5.tar.gz. +galaxy.datatypes.registry DEBUG 2024-02-23 12:54:49,646 [pN:main,p:69576,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:Fast5ArchiveBz2 from the datatype registry for extension fast5.tar.bz2. +galaxy.datatypes.registry DEBUG 2024-02-23 12:54:49,646 [pN:main,p:69576,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:CompressedArchive from the datatype registry for extension peptideshaker_archive. +galaxy.datatypes.registry DEBUG 2024-02-23 12:54:49,646 [pN:main,p:69576,tN:MainThread] Retrieved datatype module galaxy.datatypes.tabular:Tabular from the datatype registry for extension percin. +galaxy.datatypes.registry DEBUG 2024-02-23 12:54:49,646 [pN:main,p:69576,tN:MainThread] Retrieved datatype module galaxy.datatypes.xml:GenericXml from the datatype registry for extension percout. +galaxy.datatypes.registry DEBUG 2024-02-23 12:54:49,646 [pN:main,p:69576,tN:MainThread] Retrieved datatype module galaxy.datatypes.tabular:Tabular from the datatype registry for extension hardklor. +galaxy.datatypes.registry DEBUG 2024-02-23 12:54:49,646 [pN:main,p:69576,tN:MainThread] Retrieved datatype module galaxy.datatypes.tabular:Tabular from the datatype registry for extension kronik. +galaxy.datatypes.registry DEBUG 2024-02-23 12:54:49,646 [pN:main,p:69576,tN:MainThread] Retrieved datatype module galaxy.datatypes.proteomics:ImzML from the datatype registry for extension imzml. +galaxy.datatypes.registry DEBUG 2024-02-23 12:54:49,646 [pN:main,p:69576,tN:MainThread] Retrieved datatype module galaxy.datatypes.images:Analyze75 from the datatype registry for extension analyze75. +galaxy.datatypes.registry DEBUG 2024-02-23 12:54:49,647 [pN:main,p:69576,tN:MainThread] Retrieved datatype module galaxy.datatypes.images:Nifti1 from the datatype registry for extension nii1. +galaxy.datatypes.registry DEBUG 2024-02-23 12:54:49,647 [pN:main,p:69576,tN:MainThread] Retrieved datatype module galaxy.datatypes.images:Nifti2 from the datatype registry for extension nii2. +galaxy.datatypes.registry DEBUG 2024-02-23 12:54:49,647 [pN:main,p:69576,tN:MainThread] Retrieved datatype module galaxy.datatypes.images:Gifti from the datatype registry for extension gii. +galaxy.datatypes.registry DEBUG 2024-02-23 12:54:49,647 [pN:main,p:69576,tN:MainThread] Retrieved datatype module galaxy.datatypes.images:Tck from the datatype registry for extension tck. +galaxy.datatypes.registry DEBUG 2024-02-23 12:54:49,647 [pN:main,p:69576,tN:MainThread] Retrieved datatype module galaxy.datatypes.images:Trk from the datatype registry for extension trk. +galaxy.datatypes.registry DEBUG 2024-02-23 12:54:49,647 [pN:main,p:69576,tN:MainThread] Retrieved datatype module galaxy.datatypes.images:Mrc2014 from the datatype registry for extension mrc. +galaxy.datatypes.registry DEBUG 2024-02-23 12:54:49,647 [pN:main,p:69576,tN:MainThread] Retrieved datatype module galaxy.datatypes.images:Star from the datatype registry for extension star. +galaxy.datatypes.registry DEBUG 2024-02-23 12:54:49,647 [pN:main,p:69576,tN:MainThread] Retrieved datatype module galaxy.datatypes.proteomics:PEFF from the datatype registry for extension peff. +galaxy.datatypes.registry DEBUG 2024-02-23 12:54:49,648 [pN:main,p:69576,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension toml. +galaxy.datatypes.registry DEBUG 2024-02-23 12:54:49,648 [pN:main,p:69576,tN:MainThread] Retrieved datatype module galaxy.datatypes.flow:FCS from the datatype registry for extension fcs. +galaxy.datatypes.registry DEBUG 2024-02-23 12:54:49,648 [pN:main,p:69576,tN:MainThread] Retrieved datatype module galaxy.datatypes.tabular:Tabular from the datatype registry for extension flowtext. +galaxy.datatypes.registry DEBUG 2024-02-23 12:54:49,648 [pN:main,p:69576,tN:MainThread] Retrieved datatype module galaxy.datatypes.tabular:Tabular from the datatype registry for extension flowclr. +galaxy.datatypes.registry DEBUG 2024-02-23 12:54:49,648 [pN:main,p:69576,tN:MainThread] Retrieved datatype module galaxy.datatypes.tabular:Tabular from the datatype registry for extension flowmfi. +galaxy.datatypes.registry DEBUG 2024-02-23 12:54:49,648 [pN:main,p:69576,tN:MainThread] Retrieved datatype module galaxy.datatypes.tabular:Tabular from the datatype registry for extension flowstat1. +galaxy.datatypes.registry DEBUG 2024-02-23 12:54:49,649 [pN:main,p:69576,tN:MainThread] Retrieved datatype module galaxy.datatypes.tabular:Tabular from the datatype registry for extension flowstat2. +galaxy.datatypes.registry DEBUG 2024-02-23 12:54:49,649 [pN:main,p:69576,tN:MainThread] Retrieved datatype module galaxy.datatypes.tabular:Tabular from the datatype registry for extension flowstat3. +galaxy.datatypes.registry DEBUG 2024-02-23 12:54:49,649 [pN:main,p:69576,tN:MainThread] Retrieved datatype module galaxy.datatypes.tabular:Tabular from the datatype registry for extension flowscore. +galaxy.datatypes.registry DEBUG 2024-02-23 12:54:49,649 [pN:main,p:69576,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:RData from the datatype registry for extension flowframe. +galaxy.datatypes.registry DEBUG 2024-02-23 12:54:49,649 [pN:main,p:69576,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:RData from the datatype registry for extension fsom. +galaxy.datatypes.registry DEBUG 2024-02-23 12:54:49,649 [pN:main,p:69576,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:RData from the datatype registry for extension flowset. +galaxy.datatypes.registry DEBUG 2024-02-23 12:54:49,650 [pN:main,p:69576,tN:MainThread] Retrieved datatype module galaxy.datatypes.tabular:Tabular from the datatype registry for extension metacyto_clr.txt. +galaxy.datatypes.registry DEBUG 2024-02-23 12:54:49,650 [pN:main,p:69576,tN:MainThread] Retrieved datatype module galaxy.datatypes.metacyto:mSummary from the datatype registry for extension metacyto_summary.txt. +galaxy.datatypes.registry DEBUG 2024-02-23 12:54:49,650 [pN:main,p:69576,tN:MainThread] Retrieved datatype module galaxy.datatypes.metacyto:mStats from the datatype registry for extension metacyto_stats.txt. +galaxy.datatypes.registry DEBUG 2024-02-23 12:54:49,650 [pN:main,p:69576,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:CompressedArchive from the datatype registry for extension deeptools_compute_matrix_archive. +galaxy.datatypes.registry DEBUG 2024-02-23 12:54:49,650 [pN:main,p:69576,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:CompressedArchive from the datatype registry for extension deeptools_coverage_matrix. +galaxy.datatypes.registry DEBUG 2024-02-23 12:54:49,650 [pN:main,p:69576,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:NetCDF from the datatype registry for extension netcdf. +galaxy.datatypes.registry DEBUG 2024-02-23 12:54:49,651 [pN:main,p:69576,tN:MainThread] Retrieved datatype module galaxy.datatypes.images:Eps from the datatype registry for extension eps. +galaxy.datatypes.registry DEBUG 2024-02-23 12:54:49,651 [pN:main,p:69576,tN:MainThread] Retrieved datatype module galaxy.datatypes.images:Rast from the datatype registry for extension rast. +galaxy.datatypes.registry DEBUG 2024-02-23 12:54:49,651 [pN:main,p:69576,tN:MainThread] Retrieved datatype module galaxy.datatypes.images:Laj from the datatype registry for extension laj. +galaxy.datatypes.registry DEBUG 2024-02-23 12:54:49,651 [pN:main,p:69576,tN:MainThread] Retrieved datatype module galaxy.datatypes.sequence:Lav from the datatype registry for extension lav. +galaxy.datatypes.registry DEBUG 2024-02-23 12:54:49,651 [pN:main,p:69576,tN:MainThread] Retrieved datatype module galaxy.datatypes.sequence:Maf from the datatype registry for extension maf. +galaxy.datatypes.registry DEBUG 2024-02-23 12:54:49,651 [pN:main,p:69576,tN:MainThread] Retrieved datatype module galaxy.datatypes.sequence:MafCustomTrack from the datatype registry for extension mafcustomtrack. +galaxy.datatypes.registry DEBUG 2024-02-23 12:54:49,651 [pN:main,p:69576,tN:MainThread] Retrieved datatype module galaxy.datatypes.tabular:MatrixMarket from the datatype registry for extension mtx. +galaxy.datatypes.registry DEBUG 2024-02-23 12:54:49,651 [pN:main,p:69576,tN:MainThread] Retrieved datatype module galaxy.datatypes.tabular:CMAP from the datatype registry for extension cmap. +galaxy.datatypes.registry DEBUG 2024-02-23 12:54:49,651 [pN:main,p:69576,tN:MainThread] Retrieved datatype module galaxy.datatypes.interval:ENCODEPeak from the datatype registry for extension encodepeak. +galaxy.datatypes.registry DEBUG 2024-02-23 12:54:49,651 [pN:main,p:69576,tN:MainThread] Retrieved datatype module galaxy.datatypes.images:Pdf from the datatype registry for extension pdf. +galaxy.datatypes.registry DEBUG 2024-02-23 12:54:49,652 [pN:main,p:69576,tN:MainThread] Retrieved datatype module galaxy.datatypes.tabular:Pileup from the datatype registry for extension pileup. +galaxy.datatypes.registry DEBUG 2024-02-23 12:54:49,652 [pN:main,p:69576,tN:MainThread] Retrieved datatype module galaxy.datatypes.tabular:Psl from the datatype registry for extension psl. +galaxy.datatypes.registry DEBUG 2024-02-23 12:54:49,652 [pN:main,p:69576,tN:MainThread] Retrieved datatype module galaxy.datatypes.text:Obo from the datatype registry for extension obo. +galaxy.datatypes.registry DEBUG 2024-02-23 12:54:49,652 [pN:main,p:69576,tN:MainThread] Retrieved datatype module galaxy.datatypes.xml:Owl from the datatype registry for extension owl. +galaxy.datatypes.registry DEBUG 2024-02-23 12:54:49,652 [pN:main,p:69576,tN:MainThread] Retrieved datatype module galaxy.datatypes.images:Png from the datatype registry for extension png. +galaxy.datatypes.registry DEBUG 2024-02-23 12:54:49,652 [pN:main,p:69576,tN:MainThread] Retrieved datatype module galaxy.datatypes.qualityscore:QualityScore from the datatype registry for extension qual. +galaxy.datatypes.registry DEBUG 2024-02-23 12:54:49,652 [pN:main,p:69576,tN:MainThread] Retrieved datatype module galaxy.datatypes.qualityscore:QualityScoreSolexa from the datatype registry for extension qualsolexa. +galaxy.datatypes.registry DEBUG 2024-02-23 12:54:49,652 [pN:main,p:69576,tN:MainThread] Retrieved datatype module galaxy.datatypes.qualityscore:QualityScoreIllumina from the datatype registry for extension qualillumina. +galaxy.datatypes.registry DEBUG 2024-02-23 12:54:49,652 [pN:main,p:69576,tN:MainThread] Retrieved datatype module galaxy.datatypes.qualityscore:QualityScoreSOLiD from the datatype registry for extension qualsolid. +galaxy.datatypes.registry DEBUG 2024-02-23 12:54:49,652 [pN:main,p:69576,tN:MainThread] Retrieved datatype module galaxy.datatypes.qualityscore:QualityScore454 from the datatype registry for extension qual454. +galaxy.datatypes.registry DEBUG 2024-02-23 12:54:49,652 [pN:main,p:69576,tN:MainThread] Retrieved datatype module galaxy.datatypes.assembly:Roadmaps from the datatype registry for extension roadmaps. +galaxy.datatypes.registry DEBUG 2024-02-23 12:54:49,653 [pN:main,p:69576,tN:MainThread] Retrieved datatype module galaxy.datatypes.tabular:Sam from the datatype registry for extension sam. +galaxy.datatypes.registry DEBUG 2024-02-23 12:54:49,653 [pN:main,p:69576,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:Scf from the datatype registry for extension scf. +galaxy.datatypes.registry DEBUG 2024-02-23 12:54:49,653 [pN:main,p:69576,tN:MainThread] Retrieved datatype module galaxy.datatypes.assembly:Sequences from the datatype registry for extension sequences. +galaxy.datatypes.registry DEBUG 2024-02-23 12:54:49,653 [pN:main,p:69576,tN:MainThread] Retrieved datatype module galaxy.datatypes.text:SnpEffDb from the datatype registry for extension snpeffdb. +galaxy.datatypes.registry DEBUG 2024-02-23 12:54:49,653 [pN:main,p:69576,tN:MainThread] Retrieved datatype module galaxy.datatypes.text:SnpSiftDbNSFP from the datatype registry for extension snpsiftdbnsfp. +galaxy.datatypes.registry DEBUG 2024-02-23 12:54:49,653 [pN:main,p:69576,tN:MainThread] Retrieved datatype module galaxy.datatypes.tabular:Tabular from the datatype registry for extension dbnsfp.tabular. +galaxy.datatypes.registry DEBUG 2024-02-23 12:54:49,653 [pN:main,p:69576,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:Sff from the datatype registry for extension sff. +galaxy.datatypes.registry DEBUG 2024-02-23 12:54:49,653 [pN:main,p:69576,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:Sra from the datatype registry for extension sra. +galaxy.datatypes.registry DEBUG 2024-02-23 12:54:49,653 [pN:main,p:69576,tN:MainThread] Retrieved datatype module galaxy.datatypes.tabular:SraManifest from the datatype registry for extension sra_manifest.tabular. +galaxy.datatypes.registry DEBUG 2024-02-23 12:54:49,654 [pN:main,p:69576,tN:MainThread] Retrieved datatype module galaxy.datatypes.xml:GenericXml from the datatype registry for extension svg. +galaxy.datatypes.registry DEBUG 2024-02-23 12:54:49,654 [pN:main,p:69576,tN:MainThread] Retrieved datatype module galaxy.datatypes.tabular:Taxonomy from the datatype registry for extension taxonomy. +galaxy.datatypes.registry DEBUG 2024-02-23 12:54:49,654 [pN:main,p:69576,tN:MainThread] Retrieved datatype module galaxy.datatypes.tabular:Tabular from the datatype registry for extension tabular. +galaxy.datatypes.registry DEBUG 2024-02-23 12:54:49,654 [pN:main,p:69576,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:TwoBit from the datatype registry for extension twobit. +galaxy.datatypes.registry DEBUG 2024-02-23 12:54:49,654 [pN:main,p:69576,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:SQmass from the datatype registry for extension sqmass. +galaxy.datatypes.registry DEBUG 2024-02-23 12:54:49,654 [pN:main,p:69576,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:GeminiSQLite from the datatype registry for extension gemini.sqlite. +galaxy.datatypes.registry DEBUG 2024-02-23 12:54:49,654 [pN:main,p:69576,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:ChiraSQLite from the datatype registry for extension chira.sqlite. +galaxy.datatypes.registry DEBUG 2024-02-23 12:54:49,654 [pN:main,p:69576,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:CuffDiffSQlite from the datatype registry for extension cuffdiff.sqlite. +galaxy.datatypes.registry DEBUG 2024-02-23 12:54:49,654 [pN:main,p:69576,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:GAFASQLite from the datatype registry for extension gafa.sqlite. +galaxy.datatypes.registry DEBUG 2024-02-23 12:54:49,655 [pN:main,p:69576,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:NcbiTaxonomySQlite from the datatype registry for extension ncbitaxonomy.sqlite. +galaxy.datatypes.registry DEBUG 2024-02-23 12:54:49,655 [pN:main,p:69576,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension txt. +galaxy.datatypes.registry DEBUG 2024-02-23 12:54:49,655 [pN:main,p:69576,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:LineCount from the datatype registry for extension linecount. +galaxy.datatypes.registry DEBUG 2024-02-23 12:54:49,655 [pN:main,p:69576,tN:MainThread] Retrieved datatype module galaxy.datatypes.sequence:MemePsp from the datatype registry for extension memepsp. +galaxy.datatypes.registry DEBUG 2024-02-23 12:54:49,655 [pN:main,p:69576,tN:MainThread] Retrieved datatype module galaxy.datatypes.xml:MEMEXml from the datatype registry for extension memexml. +galaxy.datatypes.registry DEBUG 2024-02-23 12:54:49,655 [pN:main,p:69576,tN:MainThread] Retrieved datatype module galaxy.datatypes.xml:CisML from the datatype registry for extension cisml. +galaxy.datatypes.registry DEBUG 2024-02-23 12:54:49,655 [pN:main,p:69576,tN:MainThread] Retrieved datatype module galaxy.datatypes.xml:GenericXml from the datatype registry for extension xml. +galaxy.datatypes.registry DEBUG 2024-02-23 12:54:49,655 [pN:main,p:69576,tN:MainThread] Retrieved datatype module galaxy.datatypes.xml:GenericXml from the datatype registry for extension xsd. +galaxy.datatypes.registry DEBUG 2024-02-23 12:54:49,655 [pN:main,p:69576,tN:MainThread] Retrieved datatype module galaxy.datatypes.xml:Dzi from the datatype registry for extension dzi. +galaxy.datatypes.registry DEBUG 2024-02-23 12:54:49,655 [pN:main,p:69576,tN:MainThread] Retrieved datatype module galaxy.datatypes.tabular:Vcf from the datatype registry for extension vcf. +galaxy.datatypes.registry DEBUG 2024-02-23 12:54:49,656 [pN:main,p:69576,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:Bcf from the datatype registry for extension bcf. +galaxy.datatypes.registry DEBUG 2024-02-23 12:54:49,656 [pN:main,p:69576,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:Bcf from the datatype registry for extension bcf_bgzip. +galaxy.datatypes.registry DEBUG 2024-02-23 12:54:49,657 [pN:main,p:69576,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:BcfUncompressed from the datatype registry for extension bcf_uncompressed. +galaxy.datatypes.registry DEBUG 2024-02-23 12:54:49,657 [pN:main,p:69576,tN:MainThread] Retrieved datatype module galaxy.datatypes.assembly:Velvet from the datatype registry for extension velvet. +galaxy.datatypes.registry DEBUG 2024-02-23 12:54:49,657 [pN:main,p:69576,tN:MainThread] Retrieved datatype module galaxy.datatypes.interval:Wiggle from the datatype registry for extension wig. +galaxy.datatypes.registry DEBUG 2024-02-23 12:54:49,657 [pN:main,p:69576,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:Binary from the datatype registry for extension interval_index. +galaxy.datatypes.registry DEBUG 2024-02-23 12:54:49,657 [pN:main,p:69576,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:Binary from the datatype registry for extension odgi. +galaxy.datatypes.registry DEBUG 2024-02-23 12:54:49,658 [pN:main,p:69576,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:CompressedArchive from the datatype registry for extension vg. +galaxy.datatypes.registry DEBUG 2024-02-23 12:54:49,658 [pN:main,p:69576,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:Binary from the datatype registry for extension xg. +galaxy.datatypes.registry DEBUG 2024-02-23 12:54:49,658 [pN:main,p:69576,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:Binary from the datatype registry for extension protobuf2. +galaxy.datatypes.registry DEBUG 2024-02-23 12:54:49,658 [pN:main,p:69576,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:Binary from the datatype registry for extension protobuf3. +galaxy.datatypes.registry DEBUG 2024-02-23 12:54:49,658 [pN:main,p:69576,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:Binary from the datatype registry for extension onnx. +galaxy.datatypes.registry DEBUG 2024-02-23 12:54:49,658 [pN:main,p:69576,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:Binary from the datatype registry for extension tabix. +galaxy.datatypes.registry DEBUG 2024-02-23 12:54:49,658 [pN:main,p:69576,tN:MainThread] Retrieved datatype module galaxy.datatypes.interval:IntervalTabix from the datatype registry for extension interval_tabix.gz. +galaxy.datatypes.registry DEBUG 2024-02-23 12:54:49,658 [pN:main,p:69576,tN:MainThread] Retrieved datatype module galaxy.datatypes.interval:JuicerMediumTabix from the datatype registry for extension juicer_medium_tabix.gz. +galaxy.datatypes.registry DEBUG 2024-02-23 12:54:49,658 [pN:main,p:69576,tN:MainThread] Retrieved datatype module galaxy.datatypes.interval:BedTabix from the datatype registry for extension bed_tabix.gz. +galaxy.datatypes.registry DEBUG 2024-02-23 12:54:49,659 [pN:main,p:69576,tN:MainThread] Retrieved datatype module galaxy.datatypes.interval:GffTabix from the datatype registry for extension gff_tabix.gz. +galaxy.datatypes.registry DEBUG 2024-02-23 12:54:49,659 [pN:main,p:69576,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:Binary from the datatype registry for extension bgzip. +galaxy.datatypes.registry DEBUG 2024-02-23 12:54:49,659 [pN:main,p:69576,tN:MainThread] Retrieved datatype module galaxy.datatypes.tabular:VcfGz from the datatype registry for extension vcf_bgzip. +galaxy.datatypes.registry DEBUG 2024-02-23 12:54:49,659 [pN:main,p:69576,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:Binary from the datatype registry for extension bus. +galaxy.datatypes.registry DEBUG 2024-02-23 12:54:49,659 [pN:main,p:69576,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:Binary from the datatype registry for extension kallisto.idx. +galaxy.datatypes.registry DEBUG 2024-02-23 12:54:49,659 [pN:main,p:69576,tN:MainThread] Retrieved datatype module galaxy.datatypes.xml:Phyloxml from the datatype registry for extension phyloxml. +galaxy.datatypes.registry DEBUG 2024-02-23 12:54:49,659 [pN:main,p:69576,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:Newick from the datatype registry for extension newick. +galaxy.datatypes.registry DEBUG 2024-02-23 12:54:49,659 [pN:main,p:69576,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:Newick from the datatype registry for extension nhx. +galaxy.datatypes.registry DEBUG 2024-02-23 12:54:49,659 [pN:main,p:69576,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:Nexus from the datatype registry for extension nex. +galaxy.datatypes.registry DEBUG 2024-02-23 12:54:49,660 [pN:main,p:69576,tN:MainThread] Retrieved datatype module galaxy.datatypes.text:IQTree from the datatype registry for extension iqtree. +galaxy.datatypes.registry DEBUG 2024-02-23 12:54:49,661 [pN:main,p:69576,tN:MainThread] Retrieved datatype module galaxy.datatypes.mothur:SquareDistanceMatrix from the datatype registry for extension mldist. +galaxy.datatypes.registry DEBUG 2024-02-23 12:54:49,664 [pN:main,p:69576,tN:MainThread] Retrieved datatype module galaxy.datatypes.genetics:Affybatch from the datatype registry for extension affybatch. +galaxy.datatypes.registry DEBUG 2024-02-23 12:54:49,664 [pN:main,p:69576,tN:MainThread] Retrieved datatype module galaxy.datatypes.genetics:Eigenstratgeno from the datatype registry for extension eigenstratgeno. +galaxy.datatypes.registry DEBUG 2024-02-23 12:54:49,664 [pN:main,p:69576,tN:MainThread] Retrieved datatype module galaxy.datatypes.genetics:Eigenstratpca from the datatype registry for extension eigenstratpca. +galaxy.datatypes.registry DEBUG 2024-02-23 12:54:49,664 [pN:main,p:69576,tN:MainThread] Retrieved datatype module galaxy.datatypes.genetics:Eset from the datatype registry for extension eset. +galaxy.datatypes.registry DEBUG 2024-02-23 12:54:49,664 [pN:main,p:69576,tN:MainThread] Retrieved datatype module galaxy.datatypes.genetics:Fped from the datatype registry for extension fped. +galaxy.datatypes.registry DEBUG 2024-02-23 12:54:49,664 [pN:main,p:69576,tN:MainThread] Retrieved datatype module galaxy.datatypes.genetics:Fphe from the datatype registry for extension fphe. +galaxy.datatypes.registry DEBUG 2024-02-23 12:54:49,664 [pN:main,p:69576,tN:MainThread] Retrieved datatype module galaxy.datatypes.genetics:GenomeGraphs from the datatype registry for extension gg. +galaxy.datatypes.registry DEBUG 2024-02-23 12:54:49,665 [pN:main,p:69576,tN:MainThread] Retrieved datatype module galaxy.datatypes.genetics:ldIndep from the datatype registry for extension ldindep. +galaxy.datatypes.registry DEBUG 2024-02-23 12:54:49,665 [pN:main,p:69576,tN:MainThread] Retrieved datatype module galaxy.datatypes.genetics:MAlist from the datatype registry for extension malist. +galaxy.datatypes.registry DEBUG 2024-02-23 12:54:49,665 [pN:main,p:69576,tN:MainThread] Retrieved datatype module galaxy.datatypes.genetics:Lped from the datatype registry for extension lped. +galaxy.datatypes.registry DEBUG 2024-02-23 12:54:49,665 [pN:main,p:69576,tN:MainThread] Retrieved datatype module galaxy.datatypes.genetics:Pbed from the datatype registry for extension pbed. +galaxy.datatypes.registry DEBUG 2024-02-23 12:54:49,665 [pN:main,p:69576,tN:MainThread] Retrieved datatype module galaxy.datatypes.genetics:Pheno from the datatype registry for extension pheno. +galaxy.datatypes.registry DEBUG 2024-02-23 12:54:49,665 [pN:main,p:69576,tN:MainThread] Retrieved datatype module galaxy.datatypes.genetics:Pphe from the datatype registry for extension pphe. +galaxy.datatypes.registry DEBUG 2024-02-23 12:54:49,665 [pN:main,p:69576,tN:MainThread] Retrieved datatype module galaxy.datatypes.genetics:RexpBase from the datatype registry for extension rexpbase. +galaxy.datatypes.registry DEBUG 2024-02-23 12:54:49,665 [pN:main,p:69576,tN:MainThread] Retrieved datatype module galaxy.datatypes.genetics:Rgenetics from the datatype registry for extension rgenetics. +galaxy.datatypes.registry DEBUG 2024-02-23 12:54:49,665 [pN:main,p:69576,tN:MainThread] Retrieved datatype module galaxy.datatypes.genetics:Snptest from the datatype registry for extension snptest. +galaxy.datatypes.registry DEBUG 2024-02-23 12:54:49,666 [pN:main,p:69576,tN:MainThread] Retrieved datatype module galaxy.datatypes.genetics:SNPMatrix from the datatype registry for extension snpmatrix. +galaxy.datatypes.registry DEBUG 2024-02-23 12:54:49,666 [pN:main,p:69576,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:ExcelXls from the datatype registry for extension xls. +galaxy.datatypes.registry DEBUG 2024-02-23 12:54:49,666 [pN:main,p:69576,tN:MainThread] Retrieved datatype module galaxy.datatypes.text:Ipynb from the datatype registry for extension ipynb. +galaxy.datatypes.registry DEBUG 2024-02-23 12:54:49,666 [pN:main,p:69576,tN:MainThread] Retrieved datatype module galaxy.datatypes.text:Json from the datatype registry for extension json. +galaxy.datatypes.registry DEBUG 2024-02-23 12:54:49,666 [pN:main,p:69576,tN:MainThread] Retrieved datatype module galaxy.datatypes.text:ExpressionJson from the datatype registry for extension expression.json. +galaxy.datatypes.registry DEBUG 2024-02-23 12:54:49,667 [pN:main,p:69576,tN:MainThread] Retrieved datatype module galaxy.datatypes.graph:Xgmml from the datatype registry for extension xgmml. +galaxy.datatypes.registry DEBUG 2024-02-23 12:54:49,667 [pN:main,p:69576,tN:MainThread] Retrieved datatype module galaxy.datatypes.graph:Sif from the datatype registry for extension sif. +galaxy.datatypes.registry DEBUG 2024-02-23 12:54:49,668 [pN:main,p:69576,tN:MainThread] Retrieved datatype module galaxy.datatypes.triples:Triples from the datatype registry for extension triples. +galaxy.datatypes.registry DEBUG 2024-02-23 12:54:49,668 [pN:main,p:69576,tN:MainThread] Retrieved datatype module galaxy.datatypes.triples:HDT from the datatype registry for extension hdt. +galaxy.datatypes.registry DEBUG 2024-02-23 12:54:49,668 [pN:main,p:69576,tN:MainThread] Retrieved datatype module galaxy.datatypes.triples:NTriples from the datatype registry for extension nt. +galaxy.datatypes.registry DEBUG 2024-02-23 12:54:49,668 [pN:main,p:69576,tN:MainThread] Retrieved datatype module galaxy.datatypes.triples:N3 from the datatype registry for extension n3. +galaxy.datatypes.registry DEBUG 2024-02-23 12:54:49,668 [pN:main,p:69576,tN:MainThread] Retrieved datatype module galaxy.datatypes.triples:Turtle from the datatype registry for extension ttl. +galaxy.datatypes.registry DEBUG 2024-02-23 12:54:49,668 [pN:main,p:69576,tN:MainThread] Retrieved datatype module galaxy.datatypes.triples:Rdf from the datatype registry for extension rdf. +galaxy.datatypes.registry DEBUG 2024-02-23 12:54:49,668 [pN:main,p:69576,tN:MainThread] Retrieved datatype module galaxy.datatypes.triples:Jsonld from the datatype registry for extension jsonld. +galaxy.datatypes.registry DEBUG 2024-02-23 12:54:49,669 [pN:main,p:69576,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:ExcelXls from the datatype registry for extension excel.xls. +galaxy.datatypes.registry DEBUG 2024-02-23 12:54:49,669 [pN:main,p:69576,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:Xlsx from the datatype registry for extension xlsx. +galaxy.datatypes.registry DEBUG 2024-02-23 12:54:49,669 [pN:main,p:69576,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:Binary from the datatype registry for extension docx. +galaxy.datatypes.registry DEBUG 2024-02-23 12:54:49,669 [pN:main,p:69576,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension btwisted. +galaxy.datatypes.registry DEBUG 2024-02-23 12:54:49,669 [pN:main,p:69576,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension cai. +galaxy.datatypes.registry DEBUG 2024-02-23 12:54:49,669 [pN:main,p:69576,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension cat_db. +galaxy.datatypes.registry DEBUG 2024-02-23 12:54:49,669 [pN:main,p:69576,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension charge. +galaxy.datatypes.registry DEBUG 2024-02-23 12:54:49,669 [pN:main,p:69576,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension checktrans. +galaxy.datatypes.registry DEBUG 2024-02-23 12:54:49,670 [pN:main,p:69576,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension chips. +galaxy.datatypes.registry DEBUG 2024-02-23 12:54:49,670 [pN:main,p:69576,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension codcmp. +galaxy.datatypes.registry DEBUG 2024-02-23 12:54:49,670 [pN:main,p:69576,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension coderet. +galaxy.datatypes.registry DEBUG 2024-02-23 12:54:49,670 [pN:main,p:69576,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension compseq. +galaxy.datatypes.registry DEBUG 2024-02-23 12:54:49,670 [pN:main,p:69576,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension cpgplot. +galaxy.datatypes.registry DEBUG 2024-02-23 12:54:49,670 [pN:main,p:69576,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension cpgreport. +galaxy.datatypes.registry DEBUG 2024-02-23 12:54:49,670 [pN:main,p:69576,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension cusp. +galaxy.datatypes.registry DEBUG 2024-02-23 12:54:49,670 [pN:main,p:69576,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension cut. +galaxy.datatypes.registry DEBUG 2024-02-23 12:54:49,670 [pN:main,p:69576,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension dan. +galaxy.datatypes.registry DEBUG 2024-02-23 12:54:49,671 [pN:main,p:69576,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension digest. +galaxy.datatypes.registry DEBUG 2024-02-23 12:54:49,671 [pN:main,p:69576,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension dreg. +galaxy.datatypes.registry DEBUG 2024-02-23 12:54:49,671 [pN:main,p:69576,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension einverted. +galaxy.datatypes.registry DEBUG 2024-02-23 12:54:49,671 [pN:main,p:69576,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension epestfind. +galaxy.datatypes.registry DEBUG 2024-02-23 12:54:49,671 [pN:main,p:69576,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension equicktandem. +galaxy.datatypes.registry DEBUG 2024-02-23 12:54:49,671 [pN:main,p:69576,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension est2genome. +galaxy.datatypes.registry DEBUG 2024-02-23 12:54:49,671 [pN:main,p:69576,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension etandem. +galaxy.datatypes.registry DEBUG 2024-02-23 12:54:49,671 [pN:main,p:69576,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension freak. +galaxy.datatypes.registry DEBUG 2024-02-23 12:54:49,671 [pN:main,p:69576,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension fuzznuc. +galaxy.datatypes.registry DEBUG 2024-02-23 12:54:49,672 [pN:main,p:69576,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension fuzzpro. +galaxy.datatypes.registry DEBUG 2024-02-23 12:54:49,672 [pN:main,p:69576,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension fuzztran. +galaxy.datatypes.registry DEBUG 2024-02-23 12:54:49,672 [pN:main,p:69576,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension garnier. +galaxy.datatypes.registry DEBUG 2024-02-23 12:54:49,672 [pN:main,p:69576,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension geecee. +galaxy.datatypes.registry DEBUG 2024-02-23 12:54:49,672 [pN:main,p:69576,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension helixturnhelix. +galaxy.datatypes.registry DEBUG 2024-02-23 12:54:49,672 [pN:main,p:69576,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension hmoment. +galaxy.datatypes.registry DEBUG 2024-02-23 12:54:49,672 [pN:main,p:69576,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension isochore. +galaxy.datatypes.registry DEBUG 2024-02-23 12:54:49,672 [pN:main,p:69576,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension match. +galaxy.datatypes.registry DEBUG 2024-02-23 12:54:49,672 [pN:main,p:69576,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension nametable. +galaxy.datatypes.registry DEBUG 2024-02-23 12:54:49,673 [pN:main,p:69576,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension needle. +galaxy.datatypes.registry DEBUG 2024-02-23 12:54:49,673 [pN:main,p:69576,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension newcpgreport. +galaxy.datatypes.registry DEBUG 2024-02-23 12:54:49,673 [pN:main,p:69576,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension newcpgseek. +galaxy.datatypes.registry DEBUG 2024-02-23 12:54:49,673 [pN:main,p:69576,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension noreturn. +galaxy.datatypes.registry DEBUG 2024-02-23 12:54:49,673 [pN:main,p:69576,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension palindrome. +galaxy.datatypes.registry DEBUG 2024-02-23 12:54:49,673 [pN:main,p:69576,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension pepcoil. +galaxy.datatypes.registry DEBUG 2024-02-23 12:54:49,673 [pN:main,p:69576,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension pepinfo. +galaxy.datatypes.registry DEBUG 2024-02-23 12:54:49,673 [pN:main,p:69576,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension pepstats. +galaxy.datatypes.registry DEBUG 2024-02-23 12:54:49,673 [pN:main,p:69576,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension polydot. +galaxy.datatypes.registry DEBUG 2024-02-23 12:54:49,674 [pN:main,p:69576,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension preg. +galaxy.datatypes.registry DEBUG 2024-02-23 12:54:49,674 [pN:main,p:69576,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension prettyseq. +galaxy.datatypes.registry DEBUG 2024-02-23 12:54:49,674 [pN:main,p:69576,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension primersearch. +galaxy.datatypes.registry DEBUG 2024-02-23 12:54:49,674 [pN:main,p:69576,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension showfeat. +galaxy.datatypes.registry DEBUG 2024-02-23 12:54:49,674 [pN:main,p:69576,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension showorf. +galaxy.datatypes.registry DEBUG 2024-02-23 12:54:49,674 [pN:main,p:69576,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension sixpack. +galaxy.datatypes.registry DEBUG 2024-02-23 12:54:49,674 [pN:main,p:69576,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension strider. +galaxy.datatypes.registry DEBUG 2024-02-23 12:54:49,674 [pN:main,p:69576,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension supermatcher. +galaxy.datatypes.registry DEBUG 2024-02-23 12:54:49,674 [pN:main,p:69576,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension syco. +galaxy.datatypes.registry DEBUG 2024-02-23 12:54:49,675 [pN:main,p:69576,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension textsearch. +galaxy.datatypes.registry DEBUG 2024-02-23 12:54:49,675 [pN:main,p:69576,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension vectorstrip. +galaxy.datatypes.registry DEBUG 2024-02-23 12:54:49,675 [pN:main,p:69576,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension wobble. +galaxy.datatypes.registry DEBUG 2024-02-23 12:54:49,675 [pN:main,p:69576,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension wordcount. +galaxy.datatypes.registry DEBUG 2024-02-23 12:54:49,675 [pN:main,p:69576,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension dbmotif. +galaxy.datatypes.registry DEBUG 2024-02-23 12:54:49,675 [pN:main,p:69576,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension diffseq. +galaxy.datatypes.registry DEBUG 2024-02-23 12:54:49,675 [pN:main,p:69576,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension excel. +galaxy.datatypes.registry DEBUG 2024-02-23 12:54:49,675 [pN:main,p:69576,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension feattable. +galaxy.datatypes.registry DEBUG 2024-02-23 12:54:49,675 [pN:main,p:69576,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension motif. +galaxy.datatypes.registry DEBUG 2024-02-23 12:54:49,676 [pN:main,p:69576,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension regions. +galaxy.datatypes.registry DEBUG 2024-02-23 12:54:49,676 [pN:main,p:69576,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension seqtable. +galaxy.datatypes.registry DEBUG 2024-02-23 12:54:49,676 [pN:main,p:69576,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension simple. +galaxy.datatypes.registry DEBUG 2024-02-23 12:54:49,676 [pN:main,p:69576,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension table. +galaxy.datatypes.registry DEBUG 2024-02-23 12:54:49,676 [pN:main,p:69576,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension tagseq. +galaxy.datatypes.registry DEBUG 2024-02-23 12:54:49,676 [pN:main,p:69576,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension acedb. +galaxy.datatypes.registry DEBUG 2024-02-23 12:54:49,676 [pN:main,p:69576,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension clustal. +galaxy.datatypes.registry DEBUG 2024-02-23 12:54:49,676 [pN:main,p:69576,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension codata. +galaxy.datatypes.registry DEBUG 2024-02-23 12:54:49,676 [pN:main,p:69576,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension embl. +galaxy.datatypes.registry DEBUG 2024-02-23 12:54:49,677 [pN:main,p:69576,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension fitch. +galaxy.datatypes.registry DEBUG 2024-02-23 12:54:49,677 [pN:main,p:69576,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension gcg. +galaxy.datatypes.registry DEBUG 2024-02-23 12:54:49,677 [pN:main,p:69576,tN:MainThread] Retrieved datatype module galaxy.datatypes.sequence:Genbank from the datatype registry for extension genbank. +galaxy.datatypes.registry DEBUG 2024-02-23 12:54:49,677 [pN:main,p:69576,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension hennig86. +galaxy.datatypes.registry DEBUG 2024-02-23 12:54:49,677 [pN:main,p:69576,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension ig. +galaxy.datatypes.registry DEBUG 2024-02-23 12:54:49,677 [pN:main,p:69576,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension jackknifer. +galaxy.datatypes.registry DEBUG 2024-02-23 12:54:49,677 [pN:main,p:69576,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension jackknifernon. +galaxy.datatypes.registry DEBUG 2024-02-23 12:54:49,677 [pN:main,p:69576,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension mega. +galaxy.datatypes.registry DEBUG 2024-02-23 12:54:49,678 [pN:main,p:69576,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension meganon. +galaxy.datatypes.registry DEBUG 2024-02-23 12:54:49,678 [pN:main,p:69576,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension ncbi. +galaxy.datatypes.registry DEBUG 2024-02-23 12:54:49,678 [pN:main,p:69576,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension nexus. +galaxy.datatypes.registry DEBUG 2024-02-23 12:54:49,678 [pN:main,p:69576,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension nexusnon. +galaxy.datatypes.registry DEBUG 2024-02-23 12:54:49,678 [pN:main,p:69576,tN:MainThread] Retrieved datatype module galaxy.datatypes.phylip:Phylip from the datatype registry for extension phylip. +galaxy.datatypes.registry DEBUG 2024-02-23 12:54:49,678 [pN:main,p:69576,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension phylipnon. +galaxy.datatypes.registry DEBUG 2024-02-23 12:54:49,679 [pN:main,p:69576,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension pir. +galaxy.datatypes.registry DEBUG 2024-02-23 12:54:49,679 [pN:main,p:69576,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension staden. +galaxy.datatypes.registry DEBUG 2024-02-23 12:54:49,679 [pN:main,p:69576,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension swiss. +galaxy.datatypes.registry DEBUG 2024-02-23 12:54:49,680 [pN:main,p:69576,tN:MainThread] Retrieved datatype module galaxy.datatypes.msa:Msf from the datatype registry for extension msf. +galaxy.datatypes.registry DEBUG 2024-02-23 12:54:49,680 [pN:main,p:69576,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension markx0. +galaxy.datatypes.registry DEBUG 2024-02-23 12:54:49,680 [pN:main,p:69576,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension markx1. +galaxy.datatypes.registry DEBUG 2024-02-23 12:54:49,680 [pN:main,p:69576,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension markx10. +galaxy.datatypes.registry DEBUG 2024-02-23 12:54:49,680 [pN:main,p:69576,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension markx2. +galaxy.datatypes.registry DEBUG 2024-02-23 12:54:49,680 [pN:main,p:69576,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension markx3. +galaxy.datatypes.registry DEBUG 2024-02-23 12:54:49,681 [pN:main,p:69576,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension pair. +galaxy.datatypes.registry DEBUG 2024-02-23 12:54:49,681 [pN:main,p:69576,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension score. +galaxy.datatypes.registry DEBUG 2024-02-23 12:54:49,681 [pN:main,p:69576,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension srs. +galaxy.datatypes.registry DEBUG 2024-02-23 12:54:49,681 [pN:main,p:69576,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension srspair. +galaxy.datatypes.registry DEBUG 2024-02-23 12:54:49,681 [pN:main,p:69576,tN:MainThread] Retrieved datatype module galaxy.datatypes.annotation:SnapHmm from the datatype registry for extension snaphmm. +galaxy.datatypes.registry DEBUG 2024-02-23 12:54:49,682 [pN:main,p:69576,tN:MainThread] Retrieved datatype module galaxy.datatypes.annotation:Augustus from the datatype registry for extension augustus. +galaxy.datatypes.registry DEBUG 2024-02-23 12:54:49,682 [pN:main,p:69576,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:ICM from the datatype registry for extension icm. +galaxy.datatypes.registry DEBUG 2024-02-23 12:54:49,682 [pN:main,p:69576,tN:MainThread] Retrieved datatype module galaxy.datatypes.msa:InfernalCM from the datatype registry for extension cm. +galaxy.datatypes.registry DEBUG 2024-02-23 12:54:49,682 [pN:main,p:69576,tN:MainThread] Retrieved datatype module galaxy.datatypes.msa:Hmmer2 from the datatype registry for extension hmm2. +galaxy.datatypes.registry DEBUG 2024-02-23 12:54:49,682 [pN:main,p:69576,tN:MainThread] Retrieved datatype module galaxy.datatypes.msa:Hmmer3 from the datatype registry for extension hmm3. +galaxy.datatypes.registry DEBUG 2024-02-23 12:54:49,682 [pN:main,p:69576,tN:MainThread] Retrieved datatype module galaxy.datatypes.msa:Stockholm_1_0 from the datatype registry for extension stockholm. +galaxy.datatypes.registry DEBUG 2024-02-23 12:54:49,682 [pN:main,p:69576,tN:MainThread] Retrieved datatype module galaxy.datatypes.msa:MauveXmfa from the datatype registry for extension xmfa. +galaxy.datatypes.registry DEBUG 2024-02-23 12:54:49,683 [pN:main,p:69576,tN:MainThread] Retrieved datatype module galaxy.datatypes.microarrays:Cel from the datatype registry for extension cel. +galaxy.datatypes.registry DEBUG 2024-02-23 12:54:49,683 [pN:main,p:69576,tN:MainThread] Retrieved datatype module galaxy.datatypes.microarrays:Gpr from the datatype registry for extension gpr. +galaxy.datatypes.registry DEBUG 2024-02-23 12:54:49,683 [pN:main,p:69576,tN:MainThread] Retrieved datatype module galaxy.datatypes.microarrays:Gal from the datatype registry for extension gal. +galaxy.datatypes.registry DEBUG 2024-02-23 12:54:49,683 [pN:main,p:69576,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:RDS from the datatype registry for extension rds. +galaxy.datatypes.registry DEBUG 2024-02-23 12:54:49,683 [pN:main,p:69576,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:RDS from the datatype registry for extension phyloseq. +galaxy.datatypes.registry DEBUG 2024-02-23 12:54:49,683 [pN:main,p:69576,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:RData from the datatype registry for extension rdata. +galaxy.datatypes.registry DEBUG 2024-02-23 12:54:49,683 [pN:main,p:69576,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:RData from the datatype registry for extension rdata.sce. +galaxy.datatypes.registry DEBUG 2024-02-23 12:54:49,683 [pN:main,p:69576,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:RData from the datatype registry for extension rdata.xcms.raw. +galaxy.datatypes.registry DEBUG 2024-02-23 12:54:49,684 [pN:main,p:69576,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:RData from the datatype registry for extension rdata.msnbase.raw. +galaxy.datatypes.registry DEBUG 2024-02-23 12:54:49,684 [pN:main,p:69576,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:RData from the datatype registry for extension rdata.xcms.findchrompeaks. +galaxy.datatypes.registry DEBUG 2024-02-23 12:54:49,684 [pN:main,p:69576,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:RData from the datatype registry for extension rdata.xcms.group. +galaxy.datatypes.registry DEBUG 2024-02-23 12:54:49,684 [pN:main,p:69576,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:RData from the datatype registry for extension rdata.xcms.retcor. +galaxy.datatypes.registry DEBUG 2024-02-23 12:54:49,684 [pN:main,p:69576,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:RData from the datatype registry for extension rdata.xcms.fillpeaks. +galaxy.datatypes.registry DEBUG 2024-02-23 12:54:49,684 [pN:main,p:69576,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:RData from the datatype registry for extension rdata.camera.positive. +galaxy.datatypes.registry DEBUG 2024-02-23 12:54:49,684 [pN:main,p:69576,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:RData from the datatype registry for extension rdata.camera.negative. +galaxy.datatypes.registry DEBUG 2024-02-23 12:54:49,684 [pN:main,p:69576,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:RData from the datatype registry for extension rdata.camera.quick. +galaxy.datatypes.registry DEBUG 2024-02-23 12:54:49,685 [pN:main,p:69576,tN:MainThread] Retrieved datatype module galaxy.datatypes.hdf5:HDF5SummarizedExperiment from the datatype registry for extension rdata.se. +galaxy.datatypes.registry DEBUG 2024-02-23 12:54:49,685 [pN:main,p:69576,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:Binary from the datatype registry for extension rdock_as. +galaxy.datatypes.registry DEBUG 2024-02-23 12:54:49,685 [pN:main,p:69576,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:OxliCountGraph from the datatype registry for extension oxlicg. +galaxy.datatypes.registry DEBUG 2024-02-23 12:54:49,685 [pN:main,p:69576,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:OxliNodeGraph from the datatype registry for extension oxling. +galaxy.datatypes.registry DEBUG 2024-02-23 12:54:49,685 [pN:main,p:69576,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:OxliTagSet from the datatype registry for extension oxlits. +galaxy.datatypes.registry DEBUG 2024-02-23 12:54:49,685 [pN:main,p:69576,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:OxliStopTags from the datatype registry for extension oxlist. +galaxy.datatypes.registry DEBUG 2024-02-23 12:54:49,685 [pN:main,p:69576,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:OxliSubset from the datatype registry for extension oxliss. +galaxy.datatypes.registry DEBUG 2024-02-23 12:54:49,686 [pN:main,p:69576,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:OxliGraphLabels from the datatype registry for extension oxligl. +galaxy.datatypes.registry DEBUG 2024-02-23 12:54:49,687 [pN:main,p:69576,tN:MainThread] Retrieved datatype module galaxy.datatypes.constructive_solid_geometry:STL from the datatype registry for extension stl. +galaxy.datatypes.registry DEBUG 2024-02-23 12:54:49,687 [pN:main,p:69576,tN:MainThread] Retrieved datatype module galaxy.datatypes.constructive_solid_geometry:PlyAscii from the datatype registry for extension plyascii. +galaxy.datatypes.registry DEBUG 2024-02-23 12:54:49,687 [pN:main,p:69576,tN:MainThread] Retrieved datatype module galaxy.datatypes.constructive_solid_geometry:PlyBinary from the datatype registry for extension plybinary. +galaxy.datatypes.registry DEBUG 2024-02-23 12:54:49,687 [pN:main,p:69576,tN:MainThread] Retrieved datatype module galaxy.datatypes.constructive_solid_geometry:VtkAscii from the datatype registry for extension vtkascii. +galaxy.datatypes.registry DEBUG 2024-02-23 12:54:49,687 [pN:main,p:69576,tN:MainThread] Retrieved datatype module galaxy.datatypes.constructive_solid_geometry:VtkBinary from the datatype registry for extension vtkbinary. +galaxy.datatypes.registry DEBUG 2024-02-23 12:54:49,687 [pN:main,p:69576,tN:MainThread] Retrieved datatype module galaxy.datatypes.text:Biom1 from the datatype registry for extension biom1. +galaxy.datatypes.registry DEBUG 2024-02-23 12:54:49,688 [pN:main,p:69576,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:Biom2 from the datatype registry for extension biom2. +galaxy.datatypes.registry DEBUG 2024-02-23 12:54:49,688 [pN:main,p:69576,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:MashSketch from the datatype registry for extension msh. +galaxy.datatypes.registry DEBUG 2024-02-23 12:54:49,688 [pN:main,p:69576,tN:MainThread] Retrieved datatype module galaxy.datatypes.interval:ScIdx from the datatype registry for extension scidx. +galaxy.datatypes.registry DEBUG 2024-02-23 12:54:49,690 [pN:main,p:69576,tN:MainThread] Retrieved datatype module galaxy.datatypes.molecules:SMILES from the datatype registry for extension smi. +galaxy.datatypes.registry DEBUG 2024-02-23 12:54:49,690 [pN:main,p:69576,tN:MainThread] Retrieved datatype module galaxy.datatypes.molecules:SDF from the datatype registry for extension sdf. +galaxy.datatypes.registry DEBUG 2024-02-23 12:54:49,690 [pN:main,p:69576,tN:MainThread] Retrieved datatype module galaxy.datatypes.molecules:InChI from the datatype registry for extension inchi. +galaxy.datatypes.registry DEBUG 2024-02-23 12:54:49,690 [pN:main,p:69576,tN:MainThread] Retrieved datatype module galaxy.datatypes.molecules:MOL from the datatype registry for extension mol. +galaxy.datatypes.registry DEBUG 2024-02-23 12:54:49,690 [pN:main,p:69576,tN:MainThread] Retrieved datatype module galaxy.datatypes.molecules:MOL2 from the datatype registry for extension mol2. +galaxy.datatypes.registry DEBUG 2024-02-23 12:54:49,690 [pN:main,p:69576,tN:MainThread] Retrieved datatype module galaxy.datatypes.molecules:CML from the datatype registry for extension cml. +galaxy.datatypes.registry DEBUG 2024-02-23 12:54:49,691 [pN:main,p:69576,tN:MainThread] Retrieved datatype module galaxy.datatypes.molecules:FPS from the datatype registry for extension fps. +galaxy.datatypes.registry DEBUG 2024-02-23 12:54:49,691 [pN:main,p:69576,tN:MainThread] Retrieved datatype module galaxy.datatypes.molecules:OBFS from the datatype registry for extension obfs. +galaxy.datatypes.registry DEBUG 2024-02-23 12:54:49,691 [pN:main,p:69576,tN:MainThread] Retrieved datatype module galaxy.datatypes.molecules:DRF from the datatype registry for extension drf. +galaxy.datatypes.registry DEBUG 2024-02-23 12:54:49,691 [pN:main,p:69576,tN:MainThread] Retrieved datatype module galaxy.datatypes.molecules:PHAR from the datatype registry for extension phar. +galaxy.datatypes.registry DEBUG 2024-02-23 12:54:49,691 [pN:main,p:69576,tN:MainThread] Retrieved datatype module galaxy.datatypes.molecules:PDB from the datatype registry for extension pdb. +galaxy.datatypes.registry DEBUG 2024-02-23 12:54:49,691 [pN:main,p:69576,tN:MainThread] Retrieved datatype module galaxy.datatypes.molecules:PDBQT from the datatype registry for extension pdbqt. +galaxy.datatypes.registry DEBUG 2024-02-23 12:54:49,691 [pN:main,p:69576,tN:MainThread] Retrieved datatype module galaxy.datatypes.molecules:PQR from the datatype registry for extension pqr. +galaxy.datatypes.registry DEBUG 2024-02-23 12:54:49,691 [pN:main,p:69576,tN:MainThread] Retrieved datatype module galaxy.datatypes.molecules:Cell from the datatype registry for extension cell. +galaxy.datatypes.registry DEBUG 2024-02-23 12:54:49,691 [pN:main,p:69576,tN:MainThread] Retrieved datatype module galaxy.datatypes.molecules:CIF from the datatype registry for extension cif. +galaxy.datatypes.registry DEBUG 2024-02-23 12:54:49,691 [pN:main,p:69576,tN:MainThread] Retrieved datatype module galaxy.datatypes.molecules:XYZ from the datatype registry for extension xyz. +galaxy.datatypes.registry DEBUG 2024-02-23 12:54:49,691 [pN:main,p:69576,tN:MainThread] Retrieved datatype module galaxy.datatypes.molecules:ExtendedXYZ from the datatype registry for extension extxyz. +galaxy.datatypes.registry DEBUG 2024-02-23 12:54:49,692 [pN:main,p:69576,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:Trr from the datatype registry for extension trr. +galaxy.datatypes.registry DEBUG 2024-02-23 12:54:49,692 [pN:main,p:69576,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:Dcd from the datatype registry for extension dcd. +galaxy.datatypes.registry DEBUG 2024-02-23 12:54:49,692 [pN:main,p:69576,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension top. +galaxy.datatypes.registry DEBUG 2024-02-23 12:54:49,692 [pN:main,p:69576,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension prmtop. +galaxy.datatypes.registry DEBUG 2024-02-23 12:54:49,692 [pN:main,p:69576,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension itp. +galaxy.datatypes.registry DEBUG 2024-02-23 12:54:49,692 [pN:main,p:69576,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension mdp. +galaxy.datatypes.registry DEBUG 2024-02-23 12:54:49,692 [pN:main,p:69576,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension ndx. +galaxy.datatypes.registry DEBUG 2024-02-23 12:54:49,692 [pN:main,p:69576,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension xvg. +galaxy.datatypes.registry DEBUG 2024-02-23 12:54:49,692 [pN:main,p:69576,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:Xtc from the datatype registry for extension xtc. +galaxy.datatypes.registry DEBUG 2024-02-23 12:54:49,693 [pN:main,p:69576,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:Cpt from the datatype registry for extension cpt. +galaxy.datatypes.registry DEBUG 2024-02-23 12:54:49,693 [pN:main,p:69576,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:Edr from the datatype registry for extension edr. +galaxy.datatypes.registry DEBUG 2024-02-23 12:54:49,693 [pN:main,p:69576,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:Binary from the datatype registry for extension tpr. +galaxy.datatypes.registry DEBUG 2024-02-23 12:54:49,693 [pN:main,p:69576,tN:MainThread] Retrieved datatype module galaxy.datatypes.molecules:GRO from the datatype registry for extension gro. +galaxy.datatypes.registry DEBUG 2024-02-23 12:54:49,693 [pN:main,p:69576,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension inpcrd. +galaxy.datatypes.registry DEBUG 2024-02-23 12:54:49,693 [pN:main,p:69576,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:Vel from the datatype registry for extension vel. +galaxy.datatypes.registry DEBUG 2024-02-23 12:54:49,693 [pN:main,p:69576,tN:MainThread] Retrieved datatype module galaxy.datatypes.molecules:grd from the datatype registry for extension grd. +galaxy.datatypes.registry DEBUG 2024-02-23 12:54:49,693 [pN:main,p:69576,tN:MainThread] Retrieved datatype module galaxy.datatypes.molecules:grdtgz from the datatype registry for extension grd.tgz. +galaxy.datatypes.registry DEBUG 2024-02-23 12:54:49,693 [pN:main,p:69576,tN:MainThread] Retrieved datatype module galaxy.datatypes.mothur:Otu from the datatype registry for extension mothur.otu. +galaxy.datatypes.registry DEBUG 2024-02-23 12:54:49,694 [pN:main,p:69576,tN:MainThread] Retrieved datatype module galaxy.datatypes.mothur:Otu from the datatype registry for extension mothur.list. +galaxy.datatypes.registry DEBUG 2024-02-23 12:54:49,694 [pN:main,p:69576,tN:MainThread] Retrieved datatype module galaxy.datatypes.mothur:Sabund from the datatype registry for extension mothur.sabund. +galaxy.datatypes.registry DEBUG 2024-02-23 12:54:49,694 [pN:main,p:69576,tN:MainThread] Retrieved datatype module galaxy.datatypes.mothur:Sabund from the datatype registry for extension mothur.rabund. +galaxy.datatypes.registry DEBUG 2024-02-23 12:54:49,694 [pN:main,p:69576,tN:MainThread] Retrieved datatype module galaxy.datatypes.mothur:GroupAbund from the datatype registry for extension mothur.shared. +galaxy.datatypes.registry DEBUG 2024-02-23 12:54:49,694 [pN:main,p:69576,tN:MainThread] Retrieved datatype module galaxy.datatypes.mothur:GroupAbund from the datatype registry for extension mothur.relabund. +galaxy.datatypes.registry DEBUG 2024-02-23 12:54:49,694 [pN:main,p:69576,tN:MainThread] Retrieved datatype module galaxy.datatypes.mothur:Names from the datatype registry for extension mothur.names. +galaxy.datatypes.registry DEBUG 2024-02-23 12:54:49,694 [pN:main,p:69576,tN:MainThread] Retrieved datatype module galaxy.datatypes.mothur:Group from the datatype registry for extension mothur.design. +galaxy.datatypes.registry DEBUG 2024-02-23 12:54:49,694 [pN:main,p:69576,tN:MainThread] Retrieved datatype module galaxy.datatypes.mothur:Summary from the datatype registry for extension mothur.summary. +galaxy.datatypes.registry DEBUG 2024-02-23 12:54:49,695 [pN:main,p:69576,tN:MainThread] Retrieved datatype module galaxy.datatypes.mothur:Group from the datatype registry for extension mothur.groups. +galaxy.datatypes.registry DEBUG 2024-02-23 12:54:49,695 [pN:main,p:69576,tN:MainThread] Retrieved datatype module galaxy.datatypes.mothur:Oligos from the datatype registry for extension mothur.oligos. +galaxy.datatypes.registry DEBUG 2024-02-23 12:54:49,695 [pN:main,p:69576,tN:MainThread] Retrieved datatype module galaxy.datatypes.sequence:Fasta from the datatype registry for extension mothur.align. +galaxy.datatypes.registry DEBUG 2024-02-23 12:54:49,695 [pN:main,p:69576,tN:MainThread] Retrieved datatype module galaxy.datatypes.mothur:AccNos from the datatype registry for extension mothur.accnos. +galaxy.datatypes.registry DEBUG 2024-02-23 12:54:49,695 [pN:main,p:69576,tN:MainThread] Retrieved datatype module galaxy.datatypes.mothur:AccNos from the datatype registry for extension mothur.otulabels. +galaxy.datatypes.registry DEBUG 2024-02-23 12:54:49,695 [pN:main,p:69576,tN:MainThread] Retrieved datatype module galaxy.datatypes.tabular:Tabular from the datatype registry for extension mothur.otu.corr. +galaxy.datatypes.registry DEBUG 2024-02-23 12:54:49,695 [pN:main,p:69576,tN:MainThread] Retrieved datatype module galaxy.datatypes.mothur:SecondaryStructureMap from the datatype registry for extension mothur.map. +galaxy.datatypes.registry DEBUG 2024-02-23 12:54:49,695 [pN:main,p:69576,tN:MainThread] Retrieved datatype module galaxy.datatypes.mothur:AlignCheck from the datatype registry for extension mothur.align.check. +galaxy.datatypes.registry DEBUG 2024-02-23 12:54:49,695 [pN:main,p:69576,tN:MainThread] Retrieved datatype module galaxy.datatypes.mothur:AlignReport from the datatype registry for extension mothur.align.report. +galaxy.datatypes.registry DEBUG 2024-02-23 12:54:49,695 [pN:main,p:69576,tN:MainThread] Retrieved datatype module galaxy.datatypes.mothur:LaneMask from the datatype registry for extension mothur.filter. +galaxy.datatypes.registry DEBUG 2024-02-23 12:54:49,696 [pN:main,p:69576,tN:MainThread] Retrieved datatype module galaxy.datatypes.mothur:DistanceMatrix from the datatype registry for extension mothur.dist. +galaxy.datatypes.registry DEBUG 2024-02-23 12:54:49,696 [pN:main,p:69576,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension mothur.tre. +galaxy.datatypes.registry DEBUG 2024-02-23 12:54:49,696 [pN:main,p:69576,tN:MainThread] Retrieved datatype module galaxy.datatypes.mothur:PairwiseDistanceMatrix from the datatype registry for extension mothur.pair.dist. +galaxy.datatypes.registry DEBUG 2024-02-23 12:54:49,696 [pN:main,p:69576,tN:MainThread] Retrieved datatype module galaxy.datatypes.mothur:SquareDistanceMatrix from the datatype registry for extension mothur.square.dist. +galaxy.datatypes.registry DEBUG 2024-02-23 12:54:49,696 [pN:main,p:69576,tN:MainThread] Retrieved datatype module galaxy.datatypes.mothur:LowerTriangleDistanceMatrix from the datatype registry for extension mothur.lower.dist. +galaxy.datatypes.registry DEBUG 2024-02-23 12:54:49,696 [pN:main,p:69576,tN:MainThread] Retrieved datatype module galaxy.datatypes.mothur:RefTaxonomy from the datatype registry for extension mothur.ref.taxonomy. +galaxy.datatypes.registry DEBUG 2024-02-23 12:54:49,696 [pN:main,p:69576,tN:MainThread] Retrieved datatype module galaxy.datatypes.mothur:RefTaxonomy from the datatype registry for extension mothur.seq.taxonomy. +galaxy.datatypes.registry DEBUG 2024-02-23 12:54:49,696 [pN:main,p:69576,tN:MainThread] Retrieved datatype module galaxy.datatypes.mothur:RefTaxonomy from the datatype registry for extension mothur.rdp.taxonomy. +galaxy.datatypes.registry DEBUG 2024-02-23 12:54:49,696 [pN:main,p:69576,tN:MainThread] Retrieved datatype module galaxy.datatypes.mothur:ConsensusTaxonomy from the datatype registry for extension mothur.cons.taxonomy. +galaxy.datatypes.registry DEBUG 2024-02-23 12:54:49,697 [pN:main,p:69576,tN:MainThread] Retrieved datatype module galaxy.datatypes.mothur:TaxonomySummary from the datatype registry for extension mothur.tax.summary. +galaxy.datatypes.registry DEBUG 2024-02-23 12:54:49,697 [pN:main,p:69576,tN:MainThread] Retrieved datatype module galaxy.datatypes.mothur:Frequency from the datatype registry for extension mothur.freq. +galaxy.datatypes.registry DEBUG 2024-02-23 12:54:49,697 [pN:main,p:69576,tN:MainThread] Retrieved datatype module galaxy.datatypes.mothur:Quantile from the datatype registry for extension mothur.quan. +galaxy.datatypes.registry DEBUG 2024-02-23 12:54:49,697 [pN:main,p:69576,tN:MainThread] Retrieved datatype module galaxy.datatypes.mothur:Quantile from the datatype registry for extension mothur.filtered.quan. +galaxy.datatypes.registry DEBUG 2024-02-23 12:54:49,697 [pN:main,p:69576,tN:MainThread] Retrieved datatype module galaxy.datatypes.mothur:Quantile from the datatype registry for extension mothur.masked.quan. +galaxy.datatypes.registry DEBUG 2024-02-23 12:54:49,697 [pN:main,p:69576,tN:MainThread] Retrieved datatype module galaxy.datatypes.mothur:Quantile from the datatype registry for extension mothur.filtered.masked.quan. +galaxy.datatypes.registry DEBUG 2024-02-23 12:54:49,697 [pN:main,p:69576,tN:MainThread] Retrieved datatype module galaxy.datatypes.mothur:Axes from the datatype registry for extension mothur.axes. +galaxy.datatypes.registry DEBUG 2024-02-23 12:54:49,697 [pN:main,p:69576,tN:MainThread] Retrieved datatype module galaxy.datatypes.mothur:SffFlow from the datatype registry for extension mothur.sff.flow. +galaxy.datatypes.registry DEBUG 2024-02-23 12:54:49,697 [pN:main,p:69576,tN:MainThread] Retrieved datatype module galaxy.datatypes.mothur:CountTable from the datatype registry for extension mothur.count_table. +galaxy.datatypes.registry DEBUG 2024-02-23 12:54:49,698 [pN:main,p:69576,tN:MainThread] Retrieved datatype module galaxy.datatypes.neo4j:Neo4jDB from the datatype registry for extension neostore. +galaxy.datatypes.registry DEBUG 2024-02-23 12:54:49,698 [pN:main,p:69576,tN:MainThread] Retrieved datatype module galaxy.datatypes.neo4j:Neo4jDBzip from the datatype registry for extension neostore.zip. +galaxy.datatypes.registry DEBUG 2024-02-23 12:54:49,698 [pN:main,p:69576,tN:MainThread] Retrieved datatype module galaxy.datatypes.tracks:UCSCTrackHub from the datatype registry for extension trackhub. +galaxy.datatypes.registry DEBUG 2024-02-23 12:54:49,699 [pN:main,p:69576,tN:MainThread] Retrieved datatype module galaxy.datatypes.blast:BlastXml from the datatype registry for extension blastxml. +galaxy.datatypes.registry DEBUG 2024-02-23 12:54:49,699 [pN:main,p:69576,tN:MainThread] Retrieved datatype module galaxy.datatypes.blast:BlastNucDb from the datatype registry for extension blastdbn. +galaxy.datatypes.registry DEBUG 2024-02-23 12:54:49,699 [pN:main,p:69576,tN:MainThread] Retrieved datatype module galaxy.datatypes.blast:BlastProtDb from the datatype registry for extension blastdbp. +galaxy.datatypes.registry DEBUG 2024-02-23 12:54:49,700 [pN:main,p:69576,tN:MainThread] Retrieved datatype module galaxy.datatypes.blast:BlastDomainDb from the datatype registry for extension blastdbd. +galaxy.datatypes.registry DEBUG 2024-02-23 12:54:49,700 [pN:main,p:69576,tN:MainThread] Retrieved datatype module galaxy.datatypes.blast:LastDb from the datatype registry for extension lastdb. +galaxy.datatypes.registry DEBUG 2024-02-23 12:54:49,700 [pN:main,p:69576,tN:MainThread] Retrieved datatype module galaxy.datatypes.blast:BlastNucDb5 from the datatype registry for extension blastdbn5. +galaxy.datatypes.registry DEBUG 2024-02-23 12:54:49,700 [pN:main,p:69576,tN:MainThread] Retrieved datatype module galaxy.datatypes.blast:BlastProtDb5 from the datatype registry for extension blastdbp5. +galaxy.datatypes.registry DEBUG 2024-02-23 12:54:49,700 [pN:main,p:69576,tN:MainThread] Retrieved datatype module galaxy.datatypes.blast:BlastDomainDb5 from the datatype registry for extension blastdbd5. +galaxy.datatypes.registry DEBUG 2024-02-23 12:54:49,700 [pN:main,p:69576,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:GenericAsn1 from the datatype registry for extension maskinfo-asn1. +galaxy.datatypes.registry DEBUG 2024-02-23 12:54:49,700 [pN:main,p:69576,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:GenericAsn1Binary from the datatype registry for extension maskinfo-asn1-binary. +galaxy.datatypes.registry DEBUG 2024-02-23 12:54:49,700 [pN:main,p:69576,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:GenericAsn1 from the datatype registry for extension pssm-asn1. +galaxy.datatypes.registry DEBUG 2024-02-23 12:54:49,701 [pN:main,p:69576,tN:MainThread] Retrieved datatype module galaxy.datatypes.plant_tribes:PlantTribesKsComponents from the datatype registry for extension ptkscmp. +galaxy.datatypes.registry DEBUG 2024-02-23 12:54:49,701 [pN:main,p:69576,tN:MainThread] Retrieved datatype module galaxy.datatypes.plant_tribes:Smat from the datatype registry for extension smat. +galaxy.datatypes.registry DEBUG 2024-02-23 12:54:49,701 [pN:main,p:69576,tN:MainThread] Retrieved datatype module galaxy.datatypes.genetics:GenotypeMatrix from the datatype registry for extension alohomora_gts. +galaxy.datatypes.registry DEBUG 2024-02-23 12:54:49,701 [pN:main,p:69576,tN:MainThread] Retrieved datatype module galaxy.datatypes.tabular:Tabular from the datatype registry for extension alohomora_map. +galaxy.datatypes.registry DEBUG 2024-02-23 12:54:49,701 [pN:main,p:69576,tN:MainThread] Retrieved datatype module galaxy.datatypes.tabular:Tabular from the datatype registry for extension alohomora_maf. +galaxy.datatypes.registry DEBUG 2024-02-23 12:54:49,702 [pN:main,p:69576,tN:MainThread] Retrieved datatype module galaxy.datatypes.tabular:Tabular from the datatype registry for extension alohomora_ped. +galaxy.datatypes.registry DEBUG 2024-02-23 12:54:49,702 [pN:main,p:69576,tN:MainThread] Retrieved datatype module galaxy.datatypes.tabular:Tabular from the datatype registry for extension linkage_pedin. +galaxy.datatypes.registry DEBUG 2024-02-23 12:54:49,702 [pN:main,p:69576,tN:MainThread] Retrieved datatype module galaxy.datatypes.genetics:DataIn from the datatype registry for extension linkage_datain. +galaxy.datatypes.registry DEBUG 2024-02-23 12:54:49,702 [pN:main,p:69576,tN:MainThread] Retrieved datatype module galaxy.datatypes.genetics:MarkerMap from the datatype registry for extension linkage_map. +galaxy.datatypes.registry DEBUG 2024-02-23 12:54:49,702 [pN:main,p:69576,tN:MainThread] Retrieved datatype module galaxy.datatypes.tabular:Tabular from the datatype registry for extension allegro_ihaplo. +galaxy.datatypes.registry DEBUG 2024-02-23 12:54:49,702 [pN:main,p:69576,tN:MainThread] Retrieved datatype module galaxy.datatypes.tabular:Tabular from the datatype registry for extension allegro_descent. +galaxy.datatypes.registry DEBUG 2024-02-23 12:54:49,702 [pN:main,p:69576,tN:MainThread] Retrieved datatype module galaxy.datatypes.genetics:AllegroLOD from the datatype registry for extension allegro_fparam. +galaxy.datatypes.registry DEBUG 2024-02-23 12:54:49,702 [pN:main,p:69576,tN:MainThread] Retrieved datatype module galaxy.datatypes.genetics:IdeasPre from the datatype registry for extension ideaspre. +galaxy.datatypes.registry DEBUG 2024-02-23 12:54:49,702 [pN:main,p:69576,tN:MainThread] Retrieved datatype module galaxy.datatypes.xml:Sbml from the datatype registry for extension sbml. +galaxy.datatypes.registry DEBUG 2024-02-23 12:54:49,704 [pN:main,p:69576,tN:MainThread] Retrieved datatype module galaxy.datatypes.spaln:SpalnNuclDb from the datatype registry for extension spalndbnp. +galaxy.datatypes.registry DEBUG 2024-02-23 12:54:49,704 [pN:main,p:69576,tN:MainThread] Retrieved datatype module galaxy.datatypes.spaln:SpalnProtDb from the datatype registry for extension spalndba. +galaxy.datatypes.registry DEBUG 2024-02-23 12:54:49,704 [pN:main,p:69576,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:RDS from the datatype registry for extension dada2_dada. +galaxy.datatypes.registry DEBUG 2024-02-23 12:54:49,704 [pN:main,p:69576,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:RDS from the datatype registry for extension dada2_errorrates. +galaxy.datatypes.registry DEBUG 2024-02-23 12:54:49,705 [pN:main,p:69576,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:RDS from the datatype registry for extension dada2_mergepairs. +galaxy.datatypes.registry DEBUG 2024-02-23 12:54:49,705 [pN:main,p:69576,tN:MainThread] Retrieved datatype module galaxy.datatypes.tabular:Tabular from the datatype registry for extension dada2_sequencetable. +galaxy.datatypes.registry DEBUG 2024-02-23 12:54:49,705 [pN:main,p:69576,tN:MainThread] Retrieved datatype module galaxy.datatypes.tabular:Tabular from the datatype registry for extension dada2_uniques. +galaxy.datatypes.registry DEBUG 2024-02-23 12:54:49,705 [pN:main,p:69576,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:RDS from the datatype registry for extension ampvis2. +galaxy.datatypes.registry DEBUG 2024-02-23 12:54:49,705 [pN:main,p:69576,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:Binary from the datatype registry for extension ckpt. +galaxy.datatypes.registry DEBUG 2024-02-23 12:54:49,705 [pN:main,p:69576,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:Binary from the datatype registry for extension tgz. +galaxy.datatypes.registry DEBUG 2024-02-23 12:54:49,708 [pN:main,p:69576,tN:MainThread] Retrieved datatype module galaxy.datatypes.media:Wav from the datatype registry for extension wav. +galaxy.datatypes.registry DEBUG 2024-02-23 12:54:49,708 [pN:main,p:69576,tN:MainThread] Retrieved datatype module galaxy.datatypes.media:Mp3 from the datatype registry for extension mp3. +galaxy.datatypes.registry DEBUG 2024-02-23 12:54:49,708 [pN:main,p:69576,tN:MainThread] Retrieved datatype module galaxy.datatypes.media:Mkv from the datatype registry for extension mkv. +galaxy.datatypes.registry DEBUG 2024-02-23 12:54:49,708 [pN:main,p:69576,tN:MainThread] Retrieved datatype module galaxy.datatypes.media:Mp4 from the datatype registry for extension mp4. +galaxy.datatypes.registry DEBUG 2024-02-23 12:54:49,708 [pN:main,p:69576,tN:MainThread] Retrieved datatype module galaxy.datatypes.media:Flv from the datatype registry for extension flv. +galaxy.datatypes.registry DEBUG 2024-02-23 12:54:49,708 [pN:main,p:69576,tN:MainThread] Retrieved datatype module galaxy.datatypes.media:Mpg from the datatype registry for extension mpg. +galaxy.datatypes.registry DEBUG 2024-02-23 12:54:49,709 [pN:main,p:69576,tN:MainThread] Retrieved datatype module galaxy.datatypes.speech:TextGrid from the datatype registry for extension textgrid. +galaxy.datatypes.registry DEBUG 2024-02-23 12:54:49,709 [pN:main,p:69576,tN:MainThread] Retrieved datatype module galaxy.datatypes.speech:BPF from the datatype registry for extension par. +galaxy.datatypes.registry DEBUG 2024-02-23 12:54:49,709 [pN:main,p:69576,tN:MainThread] Retrieved datatype module galaxy.datatypes.tabular:Tabular from the datatype registry for extension ffindex. +galaxy.datatypes.registry DEBUG 2024-02-23 12:54:49,709 [pN:main,p:69576,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:Data from the datatype registry for extension ffdata. +galaxy.datatypes.registry DEBUG 2024-02-23 12:54:49,709 [pN:main,p:69576,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:Pretext from the datatype registry for extension pretext. +galaxy.datatypes.registry DEBUG 2024-02-23 12:54:49,709 [pN:main,p:69576,tN:MainThread] Retrieved datatype module galaxy.datatypes.text:Html from the datatype registry for extension immuneml_receptors.html. +galaxy.datatypes.registry DEBUG 2024-02-23 12:54:49,709 [pN:main,p:69576,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:HexrdMaterials from the datatype registry for extension hexrd.materials.h5. +galaxy.datatypes.registry DEBUG 2024-02-23 12:54:49,709 [pN:main,p:69576,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:Npz from the datatype registry for extension npz. +galaxy.datatypes.registry DEBUG 2024-02-23 12:54:49,710 [pN:main,p:69576,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:HexrdImagesNpz from the datatype registry for extension hexrd.images.npz. +galaxy.datatypes.registry DEBUG 2024-02-23 12:54:49,710 [pN:main,p:69576,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:HexrdEtaOmeNpz from the datatype registry for extension hexrd.eta_ome.npz. +galaxy.datatypes.registry DEBUG 2024-02-23 12:54:49,710 [pN:main,p:69576,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:Npz from the datatype registry for extension hexrd.scored_orientations.npz. +galaxy.datatypes.registry DEBUG 2024-02-23 12:54:49,710 [pN:main,p:69576,tN:MainThread] Retrieved datatype module galaxy.datatypes.tabular:Tabular from the datatype registry for extension hexrd.accepted_orientations. +galaxy.datatypes.registry DEBUG 2024-02-23 12:54:49,710 [pN:main,p:69576,tN:MainThread] Retrieved datatype module galaxy.datatypes.text:Yaml from the datatype registry for extension hexrd.yml. +galaxy.datatypes.registry DEBUG 2024-02-23 12:54:49,710 [pN:main,p:69576,tN:MainThread] Retrieved datatype module galaxy.datatypes.constructive_solid_geometry:NeperTess from the datatype registry for extension neper.tess. +galaxy.datatypes.registry DEBUG 2024-02-23 12:54:49,710 [pN:main,p:69576,tN:MainThread] Retrieved datatype module galaxy.datatypes.constructive_solid_geometry:NeperTesr from the datatype registry for extension neper.tesr. +galaxy.datatypes.registry DEBUG 2024-02-23 12:54:49,710 [pN:main,p:69576,tN:MainThread] Retrieved datatype module galaxy.datatypes.constructive_solid_geometry:NeperPoints from the datatype registry for extension neper.points. +galaxy.datatypes.registry DEBUG 2024-02-23 12:54:49,710 [pN:main,p:69576,tN:MainThread] Retrieved datatype module galaxy.datatypes.constructive_solid_geometry:NeperPointsTabular from the datatype registry for extension neper.points.tsv. +galaxy.datatypes.registry DEBUG 2024-02-23 12:54:49,711 [pN:main,p:69576,tN:MainThread] Retrieved datatype module galaxy.datatypes.constructive_solid_geometry:NeperMultiScaleCell from the datatype registry for extension neper.mscell. +galaxy.datatypes.registry DEBUG 2024-02-23 12:54:49,711 [pN:main,p:69576,tN:MainThread] Retrieved datatype module galaxy.datatypes.constructive_solid_geometry:GmshMsh from the datatype registry for extension gmsh.msh. +galaxy.datatypes.registry DEBUG 2024-02-23 12:54:49,711 [pN:main,p:69576,tN:MainThread] Retrieved datatype module galaxy.datatypes.constructive_solid_geometry:GmshGeo from the datatype registry for extension gmsh.geo. +galaxy.datatypes.registry DEBUG 2024-02-23 12:54:49,711 [pN:main,p:69576,tN:MainThread] Retrieved datatype module galaxy.datatypes.constructive_solid_geometry:ZsetGeof from the datatype registry for extension zset.geof. +galaxy.datatypes.registry DEBUG 2024-02-23 12:54:49,711 [pN:main,p:69576,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:Binary from the datatype registry for extension stl. +galaxy.datatypes.registry DEBUG 2024-02-23 12:54:49,711 [pN:main,p:69576,tN:MainThread] Overriding conflicting datatype with extension 'stl', using datatype from /scratch/rico/galaxy/lib/galaxy/config/sample/datatypes_conf.xml.sample. +galaxy.datatypes.registry DEBUG 2024-02-23 12:54:49,711 [pN:main,p:69576,tN:MainThread] Retrieved datatype module galaxy.datatypes.text:Text from the datatype registry for extension pov. +galaxy.datatypes.registry DEBUG 2024-02-23 12:54:49,711 [pN:main,p:69576,tN:MainThread] Retrieved datatype module galaxy.datatypes.text:PithyaResult from the datatype registry for extension pithya.result. +galaxy.datatypes.registry DEBUG 2024-02-23 12:54:49,711 [pN:main,p:69576,tN:MainThread] Retrieved datatype module galaxy.datatypes.text:PithyaProperty from the datatype registry for extension pithya.property. +galaxy.datatypes.registry DEBUG 2024-02-23 12:54:49,711 [pN:main,p:69576,tN:MainThread] Retrieved datatype module galaxy.datatypes.text:PithyaModel from the datatype registry for extension pithya.model. +galaxy.datatypes.registry DEBUG 2024-02-23 12:54:49,712 [pN:main,p:69576,tN:MainThread] Retrieved datatype module galaxy.datatypes.text:BCSLts from the datatype registry for extension bcsl.ts. +galaxy.datatypes.registry DEBUG 2024-02-23 12:54:49,712 [pN:main,p:69576,tN:MainThread] Retrieved datatype module galaxy.datatypes.text:BCSLmodel from the datatype registry for extension bcsl.model. +galaxy.datatypes.registry DEBUG 2024-02-23 12:54:49,712 [pN:main,p:69576,tN:MainThread] Retrieved datatype module galaxy.datatypes.text:StormSample from the datatype registry for extension storm.sample. +galaxy.datatypes.registry DEBUG 2024-02-23 12:54:49,712 [pN:main,p:69576,tN:MainThread] Retrieved datatype module galaxy.datatypes.text:StormCheck from the datatype registry for extension storm.check. +galaxy.datatypes.registry DEBUG 2024-02-23 12:54:49,712 [pN:main,p:69576,tN:MainThread] Retrieved datatype module galaxy.datatypes.text:CTLresult from the datatype registry for extension ctl.result. +galaxy.datatypes.registry DEBUG 2024-02-23 12:54:49,712 [pN:main,p:69576,tN:MainThread] Retrieved datatype module galaxy.datatypes.text:Castep from the datatype registry for extension castep. +galaxy.datatypes.registry DEBUG 2024-02-23 12:54:49,712 [pN:main,p:69576,tN:MainThread] Retrieved datatype module galaxy.datatypes.text:Param from the datatype registry for extension param. +galaxy.datatypes.registry DEBUG 2024-02-23 12:54:49,712 [pN:main,p:69576,tN:MainThread] Retrieved datatype module galaxy.datatypes.text:FormattedDensity from the datatype registry for extension den_fmt. +galaxy.datatypes.registry DEBUG 2024-02-23 12:54:49,713 [pN:main,p:69576,tN:MainThread] Retrieved datatype module galaxy.datatypes.larch:AthenaProject from the datatype registry for extension prj. +galaxy.datatypes.registry DEBUG 2024-02-23 12:54:49,713 [pN:main,p:69576,tN:MainThread] Retrieved datatype module galaxy.datatypes.larch:FEFFInput from the datatype registry for extension inp. +galaxy.datatypes.registry DEBUG 2024-02-23 12:54:49,713 [pN:main,p:69576,tN:MainThread] Retrieved datatype module galaxy.datatypes.tabular:CSV from the datatype registry for extension sp. +galaxy.datatypes.registry DEBUG 2024-02-23 12:54:49,713 [pN:main,p:69576,tN:MainThread] Retrieved datatype module galaxy.datatypes.tabular:CSV from the datatype registry for extension gds. +galaxy.datatypes.registry DEBUG 2024-02-23 12:54:49,713 [pN:main,p:69576,tN:MainThread] Retrieved datatype module galaxy.datatypes.tabular:CSV from the datatype registry for extension feff. +galaxy.datatypes.registry DEBUG 2024-02-23 12:54:49,713 [pN:main,p:69576,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension feffit. +galaxy.datatypes.registry DEBUG 2024-02-23 12:54:49,714 [pN:main,p:69576,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:Binary from the datatype registry for extension bil. +galaxy.datatypes.registry DEBUG 2024-02-23 12:54:49,714 [pN:main,p:69576,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension hdr. +galaxy.datatypes.registry DEBUG 2024-02-23 12:54:49,714 [pN:main,p:69576,tN:MainThread] Retrieved datatype module galaxy.datatypes.gis:Shapefile from the datatype registry for extension shp. +galaxy.datatypes.registry DEBUG 2024-02-23 12:54:49,714 [pN:main,p:69576,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:FITS from the datatype registry for extension fits. +galaxy.datatypes.registry DEBUG 2024-02-23 12:54:49,715 [pN:main,p:69576,tN:MainThread] Retrieved datatype module galaxy.datatypes.chain:Chain from the datatype registry for extension chain. +galaxy.datatypes.registry DEBUG 2024-02-23 12:54:49,715 [pN:main,p:69576,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.plant_tribes:PlantTribesKsComponents' +galaxy.datatypes.registry DEBUG 2024-02-23 12:54:49,715 [pN:main,p:69576,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.plant_tribes:Smat' +galaxy.datatypes.registry DEBUG 2024-02-23 12:54:49,715 [pN:main,p:69576,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.mothur:Sabund' +galaxy.datatypes.registry DEBUG 2024-02-23 12:54:49,715 [pN:main,p:69576,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.mothur:Otu' +galaxy.datatypes.registry DEBUG 2024-02-23 12:54:49,715 [pN:main,p:69576,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.mothur:GroupAbund' +galaxy.datatypes.registry DEBUG 2024-02-23 12:54:49,715 [pN:main,p:69576,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.mothur:SecondaryStructureMap' +galaxy.datatypes.registry DEBUG 2024-02-23 12:54:49,715 [pN:main,p:69576,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.mothur:LowerTriangleDistanceMatrix' +galaxy.datatypes.registry DEBUG 2024-02-23 12:54:49,715 [pN:main,p:69576,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.mothur:SquareDistanceMatrix' +galaxy.datatypes.registry DEBUG 2024-02-23 12:54:49,715 [pN:main,p:69576,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.mothur:PairwiseDistanceMatrix' +galaxy.datatypes.registry DEBUG 2024-02-23 12:54:49,716 [pN:main,p:69576,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.mothur:Oligos' +galaxy.datatypes.registry DEBUG 2024-02-23 12:54:49,716 [pN:main,p:69576,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.mothur:Quantile' +galaxy.datatypes.registry DEBUG 2024-02-23 12:54:49,716 [pN:main,p:69576,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.mothur:Frequency' +galaxy.datatypes.registry DEBUG 2024-02-23 12:54:49,716 [pN:main,p:69576,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.mothur:LaneMask' +galaxy.datatypes.registry DEBUG 2024-02-23 12:54:49,716 [pN:main,p:69576,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.mothur:RefTaxonomy' +galaxy.datatypes.registry DEBUG 2024-02-23 12:54:49,716 [pN:main,p:69576,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.mothur:Axes' +galaxy.datatypes.registry DEBUG 2024-02-23 12:54:49,716 [pN:main,p:69576,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.constructive_solid_geometry:PlyAscii' +galaxy.datatypes.registry DEBUG 2024-02-23 12:54:49,716 [pN:main,p:69576,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.constructive_solid_geometry:PlyBinary' +galaxy.datatypes.registry DEBUG 2024-02-23 12:54:49,716 [pN:main,p:69576,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.constructive_solid_geometry:VtkAscii' +galaxy.datatypes.registry DEBUG 2024-02-23 12:54:49,716 [pN:main,p:69576,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.constructive_solid_geometry:VtkBinary' +galaxy.datatypes.registry DEBUG 2024-02-23 12:54:49,716 [pN:main,p:69576,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.constructive_solid_geometry:NeperTess' +galaxy.datatypes.registry DEBUG 2024-02-23 12:54:49,716 [pN:main,p:69576,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.constructive_solid_geometry:NeperTesr' +galaxy.datatypes.registry DEBUG 2024-02-23 12:54:49,716 [pN:main,p:69576,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.constructive_solid_geometry:GmshMsh' +galaxy.datatypes.registry DEBUG 2024-02-23 12:54:49,716 [pN:main,p:69576,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.goldenpath:GoldenPath' +galaxy.datatypes.registry DEBUG 2024-02-23 12:54:49,716 [pN:main,p:69576,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.interval:ScIdx' +galaxy.datatypes.registry DEBUG 2024-02-23 12:54:49,716 [pN:main,p:69576,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.tabular:Vcf' +galaxy.datatypes.registry DEBUG 2024-02-23 12:54:49,716 [pN:main,p:69576,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.binary:JP2' +galaxy.datatypes.registry DEBUG 2024-02-23 12:54:49,716 [pN:main,p:69576,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.binary:TwoBit' +galaxy.datatypes.registry DEBUG 2024-02-23 12:54:49,717 [pN:main,p:69576,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.binary:GeminiSQLite' +galaxy.datatypes.registry DEBUG 2024-02-23 12:54:49,717 [pN:main,p:69576,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.binary:SQmass' +galaxy.datatypes.registry DEBUG 2024-02-23 12:54:49,717 [pN:main,p:69576,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.binary:MzSQlite' +galaxy.datatypes.registry DEBUG 2024-02-23 12:54:49,717 [pN:main,p:69576,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.binary:OSW' +galaxy.datatypes.registry DEBUG 2024-02-23 12:54:49,717 [pN:main,p:69576,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.binary:PQP' +galaxy.datatypes.registry DEBUG 2024-02-23 12:54:49,717 [pN:main,p:69576,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.binary:IdpDB' +galaxy.datatypes.registry DEBUG 2024-02-23 12:54:49,717 [pN:main,p:69576,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.binary:ElibSQlite' +galaxy.datatypes.registry DEBUG 2024-02-23 12:54:49,717 [pN:main,p:69576,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.binary:DlibSQlite' +galaxy.datatypes.registry DEBUG 2024-02-23 12:54:49,717 [pN:main,p:69576,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.binary:BlibSQlite' +galaxy.datatypes.registry DEBUG 2024-02-23 12:54:49,717 [pN:main,p:69576,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.binary:ChiraSQLite' +galaxy.datatypes.registry DEBUG 2024-02-23 12:54:49,717 [pN:main,p:69576,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.binary:CuffDiffSQlite' +galaxy.datatypes.registry DEBUG 2024-02-23 12:54:49,720 [pN:main,p:69576,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.binary:GAFASQLite' +galaxy.datatypes.registry DEBUG 2024-02-23 12:54:49,720 [pN:main,p:69576,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.binary:NcbiTaxonomySQlite' +galaxy.datatypes.registry DEBUG 2024-02-23 12:54:49,720 [pN:main,p:69576,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.binary:SQlite' +galaxy.datatypes.registry DEBUG 2024-02-23 12:54:49,720 [pN:main,p:69576,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.binary:H5MLM' +galaxy.datatypes.registry DEBUG 2024-02-23 12:54:49,721 [pN:main,p:69576,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.binary:Cool' +galaxy.datatypes.registry DEBUG 2024-02-23 12:54:49,721 [pN:main,p:69576,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.binary:MCool' +galaxy.datatypes.registry DEBUG 2024-02-23 12:54:49,721 [pN:main,p:69576,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.binary:Loom' +galaxy.datatypes.registry DEBUG 2024-02-23 12:54:49,721 [pN:main,p:69576,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.binary:Anndata' +galaxy.datatypes.registry DEBUG 2024-02-23 12:54:49,721 [pN:main,p:69576,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.binary:Biom2' +galaxy.datatypes.registry DEBUG 2024-02-23 12:54:49,721 [pN:main,p:69576,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.binary:HexrdMaterials' +galaxy.datatypes.registry DEBUG 2024-02-23 12:54:49,721 [pN:main,p:69576,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.binary:H5' +galaxy.datatypes.registry DEBUG 2024-02-23 12:54:49,721 [pN:main,p:69576,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.binary:Grib' +galaxy.datatypes.registry DEBUG 2024-02-23 12:54:49,721 [pN:main,p:69576,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.binary:HexrdImagesNpz' +galaxy.datatypes.registry DEBUG 2024-02-23 12:54:49,721 [pN:main,p:69576,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.binary:HexrdEtaOmeNpz' +galaxy.datatypes.registry DEBUG 2024-02-23 12:54:49,721 [pN:main,p:69576,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.binary:Npz' +galaxy.datatypes.registry DEBUG 2024-02-23 12:54:49,721 [pN:main,p:69576,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.binary:Bam' +galaxy.datatypes.registry DEBUG 2024-02-23 12:54:49,721 [pN:main,p:69576,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.binary:BamQuerynameSorted' +galaxy.datatypes.registry DEBUG 2024-02-23 12:54:49,721 [pN:main,p:69576,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.binary:BamNative' +galaxy.datatypes.registry DEBUG 2024-02-23 12:54:49,722 [pN:main,p:69576,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.binary:CRAM' +galaxy.datatypes.registry DEBUG 2024-02-23 12:54:49,722 [pN:main,p:69576,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.binary:Sff' +galaxy.datatypes.registry DEBUG 2024-02-23 12:54:49,722 [pN:main,p:69576,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.binary:Sra' +galaxy.datatypes.registry DEBUG 2024-02-23 12:54:49,722 [pN:main,p:69576,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.binary:NetCDF' +galaxy.datatypes.registry DEBUG 2024-02-23 12:54:49,722 [pN:main,p:69576,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.binary:DAA' +galaxy.datatypes.registry DEBUG 2024-02-23 12:54:49,722 [pN:main,p:69576,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.binary:RMA6' +galaxy.datatypes.registry DEBUG 2024-02-23 12:54:49,722 [pN:main,p:69576,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.binary:DMND' +galaxy.datatypes.registry DEBUG 2024-02-23 12:54:49,722 [pN:main,p:69576,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.binary:Parquet' +galaxy.datatypes.registry DEBUG 2024-02-23 12:54:49,722 [pN:main,p:69576,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.binary:BafTar' +galaxy.datatypes.registry DEBUG 2024-02-23 12:54:49,722 [pN:main,p:69576,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.binary:TdfTar' +galaxy.datatypes.registry DEBUG 2024-02-23 12:54:49,722 [pN:main,p:69576,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.binary:MassHunterTar' +galaxy.datatypes.registry DEBUG 2024-02-23 12:54:49,722 [pN:main,p:69576,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.binary:MassLynxTar' +galaxy.datatypes.registry DEBUG 2024-02-23 12:54:49,722 [pN:main,p:69576,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.binary:YepTar' +galaxy.datatypes.registry DEBUG 2024-02-23 12:54:49,722 [pN:main,p:69576,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.binary:WiffTar' +galaxy.datatypes.registry DEBUG 2024-02-23 12:54:49,722 [pN:main,p:69576,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.binary:Fast5ArchiveGz' +galaxy.datatypes.registry DEBUG 2024-02-23 12:54:49,722 [pN:main,p:69576,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.binary:Fast5ArchiveBz2' +galaxy.datatypes.registry DEBUG 2024-02-23 12:54:49,723 [pN:main,p:69576,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.binary:Fast5Archive' +galaxy.datatypes.registry DEBUG 2024-02-23 12:54:49,723 [pN:main,p:69576,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.binary:Meryldb' +galaxy.datatypes.registry DEBUG 2024-02-23 12:54:49,723 [pN:main,p:69576,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.binary:Bref3' +galaxy.datatypes.registry DEBUG 2024-02-23 12:54:49,723 [pN:main,p:69576,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.binary:PostgresqlArchive' +galaxy.datatypes.registry DEBUG 2024-02-23 12:54:49,723 [pN:main,p:69576,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.binary:ICM' +galaxy.datatypes.registry DEBUG 2024-02-23 12:54:49,723 [pN:main,p:69576,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.binary:Idat' +galaxy.datatypes.registry DEBUG 2024-02-23 12:54:49,723 [pN:main,p:69576,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.binary:Trr' +galaxy.datatypes.registry DEBUG 2024-02-23 12:54:49,723 [pN:main,p:69576,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.binary:Dcd' +galaxy.datatypes.registry DEBUG 2024-02-23 12:54:49,723 [pN:main,p:69576,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.binary:Xtc' +galaxy.datatypes.registry DEBUG 2024-02-23 12:54:49,723 [pN:main,p:69576,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.binary:Cpt' +galaxy.datatypes.registry DEBUG 2024-02-23 12:54:49,723 [pN:main,p:69576,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.binary:Edr' +galaxy.datatypes.registry DEBUG 2024-02-23 12:54:49,723 [pN:main,p:69576,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.binary:Vel' +galaxy.datatypes.registry DEBUG 2024-02-23 12:54:49,723 [pN:main,p:69576,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.binary:Xlsx' +galaxy.datatypes.registry DEBUG 2024-02-23 12:54:49,723 [pN:main,p:69576,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.qiime2:QIIME2Metadata' +galaxy.datatypes.registry DEBUG 2024-02-23 12:54:49,723 [pN:main,p:69576,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.qiime2:QIIME2Artifact' +galaxy.datatypes.registry DEBUG 2024-02-23 12:54:49,724 [pN:main,p:69576,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.qiime2:QIIME2Visualization' +galaxy.datatypes.registry DEBUG 2024-02-23 12:54:49,724 [pN:main,p:69576,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.binary:CompressedZipArchive' +galaxy.datatypes.registry DEBUG 2024-02-23 12:54:49,724 [pN:main,p:69576,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.binary:Pretext' +galaxy.datatypes.registry DEBUG 2024-02-23 12:54:49,724 [pN:main,p:69576,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.annotation:Augustus' +galaxy.datatypes.registry DEBUG 2024-02-23 12:54:49,724 [pN:main,p:69576,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.xml:Owl' +galaxy.datatypes.registry DEBUG 2024-02-23 12:54:49,724 [pN:main,p:69576,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.chain:Chain' +galaxy.datatypes.registry DEBUG 2024-02-23 12:54:49,724 [pN:main,p:69576,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.triples:Rdf' +galaxy.datatypes.registry DEBUG 2024-02-23 12:54:49,724 [pN:main,p:69576,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.blast:BlastXml' +galaxy.datatypes.registry DEBUG 2024-02-23 12:54:49,724 [pN:main,p:69576,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.images:Gifti' +galaxy.datatypes.registry DEBUG 2024-02-23 12:54:49,724 [pN:main,p:69576,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.xml:Phyloxml' +galaxy.datatypes.registry DEBUG 2024-02-23 12:54:49,724 [pN:main,p:69576,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.xml:Dzi' +galaxy.datatypes.registry DEBUG 2024-02-23 12:54:49,724 [pN:main,p:69576,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.xml:Sbml' +galaxy.datatypes.registry DEBUG 2024-02-23 12:54:49,724 [pN:main,p:69576,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.proteomics:Dta2d' +galaxy.datatypes.registry DEBUG 2024-02-23 12:54:49,724 [pN:main,p:69576,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.proteomics:Edta' +galaxy.datatypes.registry DEBUG 2024-02-23 12:54:49,724 [pN:main,p:69576,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.proteomics:ConsensusXML' +galaxy.datatypes.registry DEBUG 2024-02-23 12:54:49,725 [pN:main,p:69576,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.proteomics:IdXML' +galaxy.datatypes.registry DEBUG 2024-02-23 12:54:49,725 [pN:main,p:69576,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.proteomics:FeatureXML' +galaxy.datatypes.registry DEBUG 2024-02-23 12:54:49,725 [pN:main,p:69576,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.proteomics:MascotXML' +galaxy.datatypes.registry DEBUG 2024-02-23 12:54:49,725 [pN:main,p:69576,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.proteomics:Mgf' +galaxy.datatypes.registry DEBUG 2024-02-23 12:54:49,725 [pN:main,p:69576,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.proteomics:Ms2' +galaxy.datatypes.registry DEBUG 2024-02-23 12:54:49,725 [pN:main,p:69576,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.proteomics:Msp' +galaxy.datatypes.registry DEBUG 2024-02-23 12:54:49,725 [pN:main,p:69576,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.proteomics:MzData' +galaxy.datatypes.registry DEBUG 2024-02-23 12:54:49,725 [pN:main,p:69576,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.proteomics:MzIdentML' +galaxy.datatypes.registry DEBUG 2024-02-23 12:54:49,725 [pN:main,p:69576,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.proteomics:MzML' +galaxy.datatypes.registry DEBUG 2024-02-23 12:54:49,725 [pN:main,p:69576,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.proteomics:MzQuantML' +galaxy.datatypes.registry DEBUG 2024-02-23 12:54:49,725 [pN:main,p:69576,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.proteomics:MzTab' +galaxy.datatypes.registry DEBUG 2024-02-23 12:54:49,725 [pN:main,p:69576,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.proteomics:MzTab2' +galaxy.datatypes.registry DEBUG 2024-02-23 12:54:49,725 [pN:main,p:69576,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.proteomics:ParamXml' +galaxy.datatypes.registry DEBUG 2024-02-23 12:54:49,725 [pN:main,p:69576,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.proteomics:MzXML' +galaxy.datatypes.registry DEBUG 2024-02-23 12:54:49,725 [pN:main,p:69576,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.proteomics:NmrML' +galaxy.datatypes.registry DEBUG 2024-02-23 12:54:49,726 [pN:main,p:69576,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.proteomics:Kroenik' +galaxy.datatypes.registry DEBUG 2024-02-23 12:54:49,726 [pN:main,p:69576,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.proteomics:PepList' +galaxy.datatypes.registry DEBUG 2024-02-23 12:54:49,726 [pN:main,p:69576,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.proteomics:PSMS' +galaxy.datatypes.registry DEBUG 2024-02-23 12:54:49,726 [pN:main,p:69576,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.proteomics:PepXml' +galaxy.datatypes.registry DEBUG 2024-02-23 12:54:49,726 [pN:main,p:69576,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.proteomics:ProtXML' +galaxy.datatypes.registry DEBUG 2024-02-23 12:54:49,726 [pN:main,p:69576,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.proteomics:SPLib' +galaxy.datatypes.registry DEBUG 2024-02-23 12:54:49,726 [pN:main,p:69576,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.proteomics:TandemXML' +galaxy.datatypes.registry DEBUG 2024-02-23 12:54:49,726 [pN:main,p:69576,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.proteomics:ThermoRAW' +galaxy.datatypes.registry DEBUG 2024-02-23 12:54:49,726 [pN:main,p:69576,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.proteomics:TraML' +galaxy.datatypes.registry DEBUG 2024-02-23 12:54:49,726 [pN:main,p:69576,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.proteomics:TrafoXML' +galaxy.datatypes.registry DEBUG 2024-02-23 12:54:49,726 [pN:main,p:69576,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.proteomics:UniProtXML' +galaxy.datatypes.registry DEBUG 2024-02-23 12:54:49,726 [pN:main,p:69576,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.proteomics:XquestXML' +galaxy.datatypes.registry DEBUG 2024-02-23 12:54:49,726 [pN:main,p:69576,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.proteomics:XquestSpecXML' +galaxy.datatypes.registry DEBUG 2024-02-23 12:54:49,726 [pN:main,p:69576,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.proteomics:QCML' +galaxy.datatypes.registry DEBUG 2024-02-23 12:54:49,727 [pN:main,p:69576,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.proteomics:Wiff' +galaxy.datatypes.registry DEBUG 2024-02-23 12:54:49,727 [pN:main,p:69576,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.proteomics:PEFF' +galaxy.datatypes.registry DEBUG 2024-02-23 12:54:49,727 [pN:main,p:69576,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.molecules:CML' +galaxy.datatypes.registry DEBUG 2024-02-23 12:54:49,727 [pN:main,p:69576,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.xml:GenericXml' +galaxy.datatypes.registry DEBUG 2024-02-23 12:54:49,727 [pN:main,p:69576,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.triples:HDT' +galaxy.datatypes.registry DEBUG 2024-02-23 12:54:49,727 [pN:main,p:69576,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.triples:Turtle' +galaxy.datatypes.registry DEBUG 2024-02-23 12:54:49,727 [pN:main,p:69576,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.triples:NTriples' +galaxy.datatypes.registry DEBUG 2024-02-23 12:54:49,727 [pN:main,p:69576,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.triples:Jsonld' +galaxy.datatypes.registry DEBUG 2024-02-23 12:54:49,727 [pN:main,p:69576,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.sequence:Maf' +galaxy.datatypes.registry DEBUG 2024-02-23 12:54:49,727 [pN:main,p:69576,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.sequence:Lav' +galaxy.datatypes.registry DEBUG 2024-02-23 12:54:49,727 [pN:main,p:69576,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.sequence:MemePsp' +galaxy.datatypes.registry DEBUG 2024-02-23 12:54:49,727 [pN:main,p:69576,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.sequence:Fastg' +galaxy.datatypes.registry DEBUG 2024-02-23 12:54:49,727 [pN:main,p:69576,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.sequence:csFasta' +galaxy.datatypes.registry DEBUG 2024-02-23 12:54:49,728 [pN:main,p:69576,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.qualityscore:QualityScoreSOLiD' +galaxy.datatypes.registry DEBUG 2024-02-23 12:54:49,728 [pN:main,p:69576,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.qualityscore:QualityScore454' +galaxy.datatypes.registry DEBUG 2024-02-23 12:54:49,728 [pN:main,p:69576,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.molecules:SDF' +galaxy.datatypes.registry DEBUG 2024-02-23 12:54:49,728 [pN:main,p:69576,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.molecules:PDB' +galaxy.datatypes.registry DEBUG 2024-02-23 12:54:49,728 [pN:main,p:69576,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.molecules:Cell' +galaxy.datatypes.registry DEBUG 2024-02-23 12:54:49,728 [pN:main,p:69576,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.molecules:CIF' +galaxy.datatypes.registry DEBUG 2024-02-23 12:54:49,728 [pN:main,p:69576,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.molecules:ExtendedXYZ' +galaxy.datatypes.registry DEBUG 2024-02-23 12:54:49,728 [pN:main,p:69576,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.molecules:XYZ' +galaxy.datatypes.registry DEBUG 2024-02-23 12:54:49,728 [pN:main,p:69576,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.molecules:MOL2' +galaxy.datatypes.registry DEBUG 2024-02-23 12:54:49,728 [pN:main,p:69576,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.molecules:InChI' +galaxy.datatypes.registry DEBUG 2024-02-23 12:54:49,728 [pN:main,p:69576,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.molecules:FPS' +galaxy.datatypes.registry DEBUG 2024-02-23 12:54:49,728 [pN:main,p:69576,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.molecules:PQR' +galaxy.datatypes.registry DEBUG 2024-02-23 12:54:49,728 [pN:main,p:69576,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.molecules:GRO' +galaxy.datatypes.registry DEBUG 2024-02-23 12:54:49,728 [pN:main,p:69576,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.phylip:Phylip' +galaxy.datatypes.registry DEBUG 2024-02-23 12:54:49,729 [pN:main,p:69576,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.sequence:Fasta' +galaxy.datatypes.registry DEBUG 2024-02-23 12:54:49,729 [pN:main,p:69576,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.sequence:FastqCSSanger' +galaxy.datatypes.registry DEBUG 2024-02-23 12:54:49,729 [pN:main,p:69576,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.sequence:FastqSanger' +galaxy.datatypes.registry DEBUG 2024-02-23 12:54:49,729 [pN:main,p:69576,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.sequence:Fastq' +galaxy.datatypes.registry DEBUG 2024-02-23 12:54:49,729 [pN:main,p:69576,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.interval:Wiggle' +galaxy.datatypes.registry DEBUG 2024-02-23 12:54:49,729 [pN:main,p:69576,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.text:Html' +galaxy.datatypes.registry DEBUG 2024-02-23 12:54:49,729 [pN:main,p:69576,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.images:Pdf' +galaxy.datatypes.registry DEBUG 2024-02-23 12:54:49,729 [pN:main,p:69576,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.sequence:Axt' +galaxy.datatypes.registry DEBUG 2024-02-23 12:54:49,729 [pN:main,p:69576,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.sequence:Genbank' +galaxy.datatypes.registry DEBUG 2024-02-23 12:54:49,729 [pN:main,p:69576,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.interval:Bed' +galaxy.datatypes.registry DEBUG 2024-02-23 12:54:49,729 [pN:main,p:69576,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.interval:CustomTrack' +galaxy.datatypes.registry DEBUG 2024-02-23 12:54:49,729 [pN:main,p:69576,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.interval:Gtf' +galaxy.datatypes.registry DEBUG 2024-02-23 12:54:49,730 [pN:main,p:69576,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.interval:Gff' +galaxy.datatypes.registry DEBUG 2024-02-23 12:54:49,730 [pN:main,p:69576,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.interval:Gff3' +galaxy.datatypes.registry DEBUG 2024-02-23 12:54:49,730 [pN:main,p:69576,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.tabular:Pileup' +galaxy.datatypes.registry DEBUG 2024-02-23 12:54:49,730 [pN:main,p:69576,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.tabular:Psl' +galaxy.datatypes.registry DEBUG 2024-02-23 12:54:49,730 [pN:main,p:69576,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.text:Paf' +galaxy.datatypes.registry DEBUG 2024-02-23 12:54:49,730 [pN:main,p:69576,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.interval:Interval' +galaxy.datatypes.registry DEBUG 2024-02-23 12:54:49,730 [pN:main,p:69576,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.tabular:Sam' +galaxy.datatypes.registry DEBUG 2024-02-23 12:54:49,730 [pN:main,p:69576,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.data:Newick' +galaxy.datatypes.registry DEBUG 2024-02-23 12:54:49,730 [pN:main,p:69576,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.data:Nexus' +galaxy.datatypes.registry DEBUG 2024-02-23 12:54:49,730 [pN:main,p:69576,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.text:IQTree' +galaxy.datatypes.registry DEBUG 2024-02-23 12:54:49,730 [pN:main,p:69576,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.text:Obo' +galaxy.datatypes.registry DEBUG 2024-02-23 12:54:49,730 [pN:main,p:69576,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.text:Arff' +galaxy.datatypes.registry DEBUG 2024-02-23 12:54:49,731 [pN:main,p:69576,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.text:Ipynb' +galaxy.datatypes.registry DEBUG 2024-02-23 12:54:49,731 [pN:main,p:69576,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.text:Biom1' +galaxy.datatypes.registry DEBUG 2024-02-23 12:54:49,731 [pN:main,p:69576,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.text:ImgtJson' +galaxy.datatypes.registry DEBUG 2024-02-23 12:54:49,731 [pN:main,p:69576,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.text:GeoJson' +galaxy.datatypes.registry DEBUG 2024-02-23 12:54:49,731 [pN:main,p:69576,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.text:PithyaResult' +galaxy.datatypes.registry DEBUG 2024-02-23 12:54:49,731 [pN:main,p:69576,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.text:BCSLts' +galaxy.datatypes.registry DEBUG 2024-02-23 12:54:49,731 [pN:main,p:69576,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.text:Json' +galaxy.datatypes.registry DEBUG 2024-02-23 12:54:49,731 [pN:main,p:69576,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.genetics:GenotypeMatrix' +galaxy.datatypes.registry DEBUG 2024-02-23 12:54:49,731 [pN:main,p:69576,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.genetics:DataIn' +galaxy.datatypes.registry DEBUG 2024-02-23 12:54:49,731 [pN:main,p:69576,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.genetics:MarkerMap' +galaxy.datatypes.registry DEBUG 2024-02-23 12:54:49,731 [pN:main,p:69576,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.genetics:AllegroLOD' +galaxy.datatypes.registry DEBUG 2024-02-23 12:54:49,731 [pN:main,p:69576,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.sequence:RNADotPlotMatrix' +galaxy.datatypes.registry DEBUG 2024-02-23 12:54:49,731 [pN:main,p:69576,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.sequence:DotBracket' +galaxy.datatypes.registry DEBUG 2024-02-23 12:54:49,732 [pN:main,p:69576,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.tabular:CMAP' +galaxy.datatypes.registry DEBUG 2024-02-23 12:54:49,732 [pN:main,p:69576,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.tabular:ConnectivityTable' +galaxy.datatypes.registry DEBUG 2024-02-23 12:54:49,732 [pN:main,p:69576,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.tabular:CSV' +galaxy.datatypes.registry DEBUG 2024-02-23 12:54:49,732 [pN:main,p:69576,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.metacyto:mSummary' +galaxy.datatypes.registry DEBUG 2024-02-23 12:54:49,732 [pN:main,p:69576,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.metacyto:mStats' +galaxy.datatypes.registry DEBUG 2024-02-23 12:54:49,732 [pN:main,p:69576,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.tabular:TSV' +galaxy.datatypes.registry DEBUG 2024-02-23 12:54:49,732 [pN:main,p:69576,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.tabular:MatrixMarket' +galaxy.datatypes.registry DEBUG 2024-02-23 12:54:49,732 [pN:main,p:69576,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.msa:Hmmer2' +galaxy.datatypes.registry DEBUG 2024-02-23 12:54:49,732 [pN:main,p:69576,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.msa:Hmmer3' +galaxy.datatypes.registry DEBUG 2024-02-23 12:54:49,732 [pN:main,p:69576,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.msa:Stockholm_1_0' +galaxy.datatypes.registry DEBUG 2024-02-23 12:54:49,732 [pN:main,p:69576,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.msa:MauveXmfa' +galaxy.datatypes.registry DEBUG 2024-02-23 12:54:49,732 [pN:main,p:69576,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.msa:InfernalCM' +galaxy.datatypes.registry DEBUG 2024-02-23 12:54:49,733 [pN:main,p:69576,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.annotation:SnapHmm' +galaxy.datatypes.registry DEBUG 2024-02-23 12:54:49,733 [pN:main,p:69576,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.microarrays:Cel' +galaxy.datatypes.registry DEBUG 2024-02-23 12:54:49,733 [pN:main,p:69576,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.microarrays:Gpr' +galaxy.datatypes.registry DEBUG 2024-02-23 12:54:49,733 [pN:main,p:69576,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.microarrays:Gal' +galaxy.datatypes.registry DEBUG 2024-02-23 12:54:49,733 [pN:main,p:69576,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.binary:RData' +galaxy.datatypes.registry DEBUG 2024-02-23 12:54:49,733 [pN:main,p:69576,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.binary:RDS' +galaxy.datatypes.registry DEBUG 2024-02-23 12:54:49,733 [pN:main,p:69576,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.images:Mrc2014' +galaxy.datatypes.registry DEBUG 2024-02-23 12:54:49,733 [pN:main,p:69576,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.images:Jpg' +galaxy.datatypes.registry DEBUG 2024-02-23 12:54:49,733 [pN:main,p:69576,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.images:Png' +galaxy.datatypes.registry DEBUG 2024-02-23 12:54:49,733 [pN:main,p:69576,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.images:OMETiff' +galaxy.datatypes.registry DEBUG 2024-02-23 12:54:49,733 [pN:main,p:69576,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.images:Tiff' +galaxy.datatypes.registry DEBUG 2024-02-23 12:54:49,733 [pN:main,p:69576,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.images:Bmp' +galaxy.datatypes.registry DEBUG 2024-02-23 12:54:49,734 [pN:main,p:69576,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.images:Gif' +galaxy.datatypes.registry DEBUG 2024-02-23 12:54:49,734 [pN:main,p:69576,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.images:Im' +galaxy.datatypes.registry DEBUG 2024-02-23 12:54:49,734 [pN:main,p:69576,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.images:Pcd' +galaxy.datatypes.registry DEBUG 2024-02-23 12:54:49,734 [pN:main,p:69576,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.images:Pcx' +galaxy.datatypes.registry DEBUG 2024-02-23 12:54:49,734 [pN:main,p:69576,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.images:Ppm' +galaxy.datatypes.registry DEBUG 2024-02-23 12:54:49,734 [pN:main,p:69576,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.images:Psd' +galaxy.datatypes.registry DEBUG 2024-02-23 12:54:49,734 [pN:main,p:69576,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.images:Xbm' +galaxy.datatypes.registry DEBUG 2024-02-23 12:54:49,734 [pN:main,p:69576,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.images:Rgb' +galaxy.datatypes.registry DEBUG 2024-02-23 12:54:49,734 [pN:main,p:69576,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.images:Pbm' +galaxy.datatypes.registry DEBUG 2024-02-23 12:54:49,734 [pN:main,p:69576,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.images:Pgm' +galaxy.datatypes.registry DEBUG 2024-02-23 12:54:49,734 [pN:main,p:69576,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.images:Xpm' +galaxy.datatypes.registry DEBUG 2024-02-23 12:54:49,734 [pN:main,p:69576,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.images:Eps' +galaxy.datatypes.registry DEBUG 2024-02-23 12:54:49,734 [pN:main,p:69576,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.images:Rast' +galaxy.datatypes.registry DEBUG 2024-02-23 12:54:49,735 [pN:main,p:69576,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.images:Tck' +galaxy.datatypes.registry DEBUG 2024-02-23 12:54:49,735 [pN:main,p:69576,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.images:Trk' +galaxy.datatypes.registry DEBUG 2024-02-23 12:54:49,735 [pN:main,p:69576,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.images:Nifti1' +galaxy.datatypes.registry DEBUG 2024-02-23 12:54:49,735 [pN:main,p:69576,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.images:Nifti2' +galaxy.datatypes.registry DEBUG 2024-02-23 12:54:49,735 [pN:main,p:69576,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.images:Star' +galaxy.datatypes.registry DEBUG 2024-02-23 12:54:49,735 [pN:main,p:69576,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.media:Wav' +galaxy.datatypes.registry DEBUG 2024-02-23 12:54:49,735 [pN:main,p:69576,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.media:Mkv' +galaxy.datatypes.registry DEBUG 2024-02-23 12:54:49,735 [pN:main,p:69576,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.media:Mp3' +galaxy.datatypes.registry DEBUG 2024-02-23 12:54:49,735 [pN:main,p:69576,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.media:Mp4' +galaxy.datatypes.registry DEBUG 2024-02-23 12:54:49,735 [pN:main,p:69576,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.media:Flv' +galaxy.datatypes.registry DEBUG 2024-02-23 12:54:49,735 [pN:main,p:69576,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.media:Mpg' +galaxy.datatypes.registry DEBUG 2024-02-23 12:54:49,735 [pN:main,p:69576,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.speech:TextGrid' +galaxy.datatypes.registry DEBUG 2024-02-23 12:54:49,736 [pN:main,p:69576,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.speech:BPF' +galaxy.datatypes.registry DEBUG 2024-02-23 12:54:49,736 [pN:main,p:69576,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.larch:FEFFInput' +galaxy.datatypes.registry DEBUG 2024-02-23 12:54:49,736 [pN:main,p:69576,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.larch:AthenaProject' +galaxy.datatypes.registry DEBUG 2024-02-23 12:54:49,736 [pN:main,p:69576,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.text:Castep' +galaxy.datatypes.registry DEBUG 2024-02-23 12:54:49,736 [pN:main,p:69576,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.text:CTLresult' +galaxy.datatypes.registry DEBUG 2024-02-23 12:54:49,736 [pN:main,p:69576,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.text:FormattedDensity' +galaxy.datatypes.registry DEBUG 2024-02-23 12:54:49,736 [pN:main,p:69576,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.text:Param' +galaxy.datatypes.registry DEBUG 2024-02-23 12:54:49,736 [pN:main,p:69576,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.text:Yaml' +galaxy.datatypes.registry DEBUG 2024-02-23 12:54:49,736 [pN:main,p:69576,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.binary:OxliCountGraph' +galaxy.datatypes.registry DEBUG 2024-02-23 12:54:49,736 [pN:main,p:69576,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.binary:OxliNodeGraph' +galaxy.datatypes.registry DEBUG 2024-02-23 12:54:49,736 [pN:main,p:69576,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.binary:OxliTagSet' +galaxy.datatypes.registry DEBUG 2024-02-23 12:54:49,736 [pN:main,p:69576,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.binary:OxliStopTags' +galaxy.datatypes.registry DEBUG 2024-02-23 12:54:49,737 [pN:main,p:69576,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.binary:OxliSubset' +galaxy.datatypes.registry DEBUG 2024-02-23 12:54:49,737 [pN:main,p:69576,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.binary:OxliGraphLabels' +galaxy.datatypes.registry DEBUG 2024-02-23 12:54:49,737 [pN:main,p:69576,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.binary:FITS' +galaxy.datatypes.registry DEBUG 2024-02-23 12:54:49,737 [pN:main,p:69576,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.neo4j:Neo4jDBzip' +galaxy.datatypes.registry DEBUG 2024-02-23 12:54:49,737 [pN:main,p:69576,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.text:PithyaProperty' +galaxy.datatypes.registry DEBUG 2024-02-23 12:54:49,737 [pN:main,p:69576,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.text:PithyaModel' +galaxy.datatypes.registry DEBUG 2024-02-23 12:54:49,737 [pN:main,p:69576,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.text:BCSLmodel' +galaxy.datatypes.registry DEBUG 2024-02-23 12:54:49,737 [pN:main,p:69576,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.text:StormSample' +galaxy.datatypes.registry DEBUG 2024-02-23 12:54:49,737 [pN:main,p:69576,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.text:StormCheck' +galaxy.datatypes.registry DEBUG 2024-02-23 12:54:49,742 [pN:main,p:69576,tN:MainThread] Build site file [tool-data/shared/ucsc/ucsc_build_sites.txt] not found using sample [tool-data/shared/ucsc/ucsc_build_sites.txt.sample]. +galaxy.datatypes.registry DEBUG 2024-02-23 12:54:49,742 [pN:main,p:69576,tN:MainThread] Loaded build site 'ucsc': tool-data/shared/ucsc/ucsc_build_sites.txt.sample with display sites: ['main', 'test', 'archaea', 'ucla'] +galaxy.datatypes.registry DEBUG 2024-02-23 12:54:49,742 [pN:main,p:69576,tN:MainThread] Loaded build site 'gbrowse': tool-data/shared/gbrowse/gbrowse_build_sites.txt with display sites: ['modencode', 'sgd_yeast', 'tair', 'wormbase', 'wormbase_ws120', 'wormbase_ws140', 'wormbase_ws170', 'wormbase_ws180', 'wormbase_ws190', 'wormbase_ws200', 'wormbase_ws204', 'wormbase_ws210', 'wormbase_ws220', 'wormbase_ws225'] +galaxy.datatypes.registry DEBUG 2024-02-23 12:54:49,742 [pN:main,p:69576,tN:MainThread] Loaded build site 'ensembl': tool-data/shared/ensembl/ensembl_sites.txt +galaxy.datatypes.registry DEBUG 2024-02-23 12:54:49,742 [pN:main,p:69576,tN:MainThread] Loaded build site 'ensembl_data_url': tool-data/shared/ensembl/ensembl_sites_data_URL.txt +galaxy.datatypes.registry DEBUG 2024-02-23 12:54:49,742 [pN:main,p:69576,tN:MainThread] Build site file [tool-data/shared/igv/igv_build_sites.txt] not found using sample [tool-data/shared/igv/igv_build_sites.txt.sample]. +galaxy.datatypes.registry DEBUG 2024-02-23 12:54:49,743 [pN:main,p:69576,tN:MainThread] Loaded build site 'igv': tool-data/shared/igv/igv_build_sites.txt.sample +galaxy.datatypes.registry DEBUG 2024-02-23 12:54:49,743 [pN:main,p:69576,tN:MainThread] Build site file [tool-data/shared/rviewer/rviewer_build_sites.txt] not found using sample [tool-data/shared/rviewer/rviewer_build_sites.txt.sample]. +galaxy.datatypes.registry DEBUG 2024-02-23 12:54:49,743 [pN:main,p:69576,tN:MainThread] Loaded build site 'rviewer': tool-data/shared/rviewer/rviewer_build_sites.txt.sample +galaxy.util.tool_shed.tool_shed_registry DEBUG 2024-02-23 12:54:49,744 [pN:main,p:69576,tN:MainThread] Loading references to tool sheds from /tmp/tmpijf8h9m9/tool_sheds_conf.xml +galaxy.util.tool_shed.tool_shed_registry DEBUG 2024-02-23 12:54:49,744 [pN:main,p:69576,tN:MainThread] Loaded reference to tool shed: Target Shed +galaxy.queue_worker INFO 2024-02-23 12:54:49,744 [pN:main,p:69576,tN:MainThread] Initializing main Galaxy Queue Worker on sqlalchemy+sqlite:////tmp/tmpijf8h9m9/galaxy.sqlite?isolation_level=IMMEDIATE +galaxy.tool_util.data WARNING 2024-02-23 12:54:49,756 [pN:main,p:69576,tN:MainThread] Cannot find index file '/scratch/rico/galaxytools/tools/ncbi_fcs_adaptor/test-data/ncbi_fcs_adaptor_config.tsv' for tool data table 'ncbi_fcs_adaptor_config' +galaxy.tool_util.data DEBUG 2024-02-23 12:54:49,756 [pN:main,p:69576,tN:MainThread] Loaded tool data table 'ncbi_fcs_adaptor_config' from file '/scratch/rico/galaxytools/tools/ncbi_fcs_adaptor/tool_data_table_conf.xml.test' +galaxy.tool_util.data WARNING 2024-02-23 12:54:49,756 [pN:main,p:69576,tN:MainThread] Cannot find index file '/scratch/rico/galaxytools/tools/ncbi_fcs_adaptor/test-data/ncbi_fcs_adaptor_databases.loc' for tool data table 'ncbi_fcs_adaptor_databases' +galaxy.tool_util.data DEBUG 2024-02-23 12:54:49,756 [pN:main,p:69576,tN:MainThread] Loaded tool data table 'ncbi_fcs_adaptor_databases' from file '/scratch/rico/galaxytools/tools/ncbi_fcs_adaptor/tool_data_table_conf.xml.test' +galaxy.tool_util.data WARNING 2024-02-23 12:54:49,756 [pN:main,p:69576,tN:MainThread] Cannot find index file '/scratch/rico/galaxytools/tools/ncbi_fcs_adaptor/test-data/ncbi_fcs_adaptor_divisions.tsv' for tool data table 'ncbi_fcs_adaptor_divisions' +galaxy.tool_util.data DEBUG 2024-02-23 12:54:49,757 [pN:main,p:69576,tN:MainThread] Loaded tool data table 'ncbi_fcs_adaptor_divisions' from file '/scratch/rico/galaxytools/tools/ncbi_fcs_adaptor/tool_data_table_conf.xml.test' +galaxy.visualization.genomes ERROR 2024-02-23 12:54:49,761 [pN:main,p:69576,tN:MainThread] Error reading twobit.loc +Traceback (most recent call last): + File "/scratch/rico/galaxy/lib/galaxy/visualization/genomes.py", line 220, in reload_genomes + with open(twobit_path) as f: +FileNotFoundError: [Errno 2] No such file or directory: '/scratch/rico/galaxy/tool-data/twobit.loc' +galaxy.util WARNING 2024-02-23 12:54:50,010 [pN:main,p:69576,tN:MainThread] directory not found: /scratch/rico/galaxy/lib/galaxy/util/../../../config/plugins/activities +galaxy.tools WARNING 2024-02-23 12:54:50,011 [pN:main,p:69576,tN:MainThread] The default shed tool config file (/tmp/tmpijf8h9m9/shed_tool_conf.xml) has been added to the tool_config_file option, if this is not the desired behavior, please set shed_tool_config_file to your primary shed-enabled tool config file +galaxy.tool_util.toolbox.base INFO 2024-02-23 12:54:50,011 [pN:main,p:69576,tN:MainThread] Parsing the tool configuration /tmp/tmpijf8h9m9/tool_conf.xml +galaxy.tool_util.toolbox.base DEBUG 2024-02-23 12:54:50,011 [pN:main,p:69576,tN:MainThread] Tool path for tool configuration /tmp/tmpijf8h9m9/tool_conf.xml is None +galaxy.tool_util.toolbox.base DEBUG 2024-02-23 12:54:50,021 [pN:main,p:69576,tN:MainThread] Loaded tool id: upload1, version: 1.1.7 into tool panel.. +galaxy.tool_util.toolbox.base DEBUG 2024-02-23 12:54:50,025 [pN:main,p:69576,tN:MainThread] Loaded tool id: ncbi_fcs_adaptor, version: 0.5.0+galaxy0 into tool panel.. +galaxy.tools WARNING 2024-02-23 12:54:50,025 [pN:main,p:69576,tN:MainThread] The default shed tool config file (/tmp/tmpijf8h9m9/shed_tool_conf.xml) has been added to the tool_config_file option, if this is not the desired behavior, please set shed_tool_config_file to your primary shed-enabled tool config file +galaxy.tool_util.toolbox.base INFO 2024-02-23 12:54:50,025 [pN:main,p:69576,tN:MainThread] Parsing the tool configuration /tmp/tmpijf8h9m9/shed_tools_conf.xml +galaxy.tool_util.toolbox.base DEBUG 2024-02-23 12:54:50,025 [pN:main,p:69576,tN:MainThread] Tool path for shed tool configuration /tmp/tmpijf8h9m9/shed_tools_conf.xml is /tmp/tmpijf8h9m9/shed_tools +galaxy.tools WARNING 2024-02-23 12:54:50,025 [pN:main,p:69576,tN:MainThread] The default shed tool config file (/tmp/tmpijf8h9m9/shed_tool_conf.xml) has been added to the tool_config_file option, if this is not the desired behavior, please set shed_tool_config_file to your primary shed-enabled tool config file +galaxy.tool_util.toolbox.base INFO 2024-02-23 12:54:50,025 [pN:main,p:69576,tN:MainThread] Parsing the tool configuration /tmp/tmpijf8h9m9/empty_tool_conf.xml +galaxy.tool_util.toolbox.base DEBUG 2024-02-23 12:54:50,025 [pN:main,p:69576,tN:MainThread] Tool path for tool configuration /tmp/tmpijf8h9m9/empty_tool_conf.xml is None +galaxy.tool_util.toolbox.base DEBUG 2024-02-23 12:54:50,025 [pN:main,p:69576,tN:MainThread] Reading tools from config files finished (14.853 ms) +galaxy.tool_util.toolbox.base DEBUG 2024-02-23 12:54:50,027 [pN:main,p:69576,tN:MainThread] Loaded tool id: upload1, version: 1.1.7 into tool panel.. +galaxy.tool_util.toolbox.views.edam DEBUG 2024-02-23 12:54:50,028 [pN:main,p:69576,tN:MainThread] Loading EDAM tool panel finished (1.514 ms) +galaxy.tool_util.toolbox.base DEBUG 2024-02-23 12:54:50,029 [pN:main,p:69576,tN:MainThread] Loaded tool id: upload1, version: 1.1.7 into tool panel.. +galaxy.tool_util.toolbox.views.edam DEBUG 2024-02-23 12:54:50,029 [pN:main,p:69576,tN:MainThread] Loading EDAM tool panel finished (1.262 ms) +galaxy.tool_util.toolbox.integrated_panel DEBUG 2024-02-23 12:54:50,029 [pN:main,p:69576,tN:MainThread] Writing integrated tool panel config file to '/tmp/tmpijf8h9m9/integrated_tool_panel_conf.xml' +galaxy.util ERROR 2024-02-23 12:54:50,490 [pN:main,p:69576,tN:MainThread] Error parsing file /tmp/tmpijf8h9m9 +Traceback (most recent call last): + File "/scratch/rico/galaxy/lib/galaxy/util/__init__.py", line 305, in parse_xml + tree = etree.parse(str(fname), parser=parser) + File "src/lxml/etree.pyx", line 3541, in lxml.etree.parse + File "src/lxml/parser.pxi", line 1879, in lxml.etree._parseDocument + File "src/lxml/parser.pxi", line 1905, in lxml.etree._parseDocumentFromURL + File "src/lxml/parser.pxi", line 1808, in lxml.etree._parseDocFromFile + File "src/lxml/parser.pxi", line 1180, in lxml.etree._BaseParser._parseDocFromFile + File "src/lxml/parser.pxi", line 618, in lxml.etree._ParserContext._handleParseResultDoc + File "src/lxml/parser.pxi", line 728, in lxml.etree._handleParseResult + File "src/lxml/parser.pxi", line 657, in lxml.etree._raiseParseError + File "/tmp/tmpijf8h9m9", line 1 +lxml.etree.XMLSyntaxError: Document is empty, line 1, column 1 +galaxy.tools.data_manager.manager ERROR 2024-02-23 12:54:50,491 [pN:main,p:69576,tN:MainThread] There was an error parsing your Data Manager config file "/tmp/tmpijf8h9m9": Document is empty, line 1, column 1 (tmpijf8h9m9, line 1) +galaxy.datatypes.registry DEBUG 2024-02-23 12:54:50,492 [pN:main,p:69576,tN:MainThread] Loaded display application 'ucsc_bam' for datatype 'bam', inherit=False. +galaxy.datatypes.registry DEBUG 2024-02-23 12:54:50,493 [pN:main,p:69576,tN:MainThread] Loaded display application 'ensembl_bam' for datatype 'bam', inherit=False. +galaxy.datatypes.display_applications.application ERROR 2024-02-23 12:54:50,494 [pN:main,p:69576,tN:MainThread] Error loading a set of Dynamic Display Application links: Unable to find data table named "igv_broad_genomes". +galaxy.datatypes.registry DEBUG 2024-02-23 12:54:50,495 [pN:main,p:69576,tN:MainThread] Loaded display application 'igv_bam' for datatype 'bam', inherit=False. +galaxy.datatypes.registry DEBUG 2024-02-23 12:54:50,496 [pN:main,p:69576,tN:MainThread] Loaded display application 'igb_bam' for datatype 'bam', inherit=False. +galaxy.datatypes.display_applications.application ERROR 2024-02-23 12:54:50,496 [pN:main,p:69576,tN:MainThread] Error loading a set of Dynamic Display Application links: Unable to find data table named "bam_iobio". +galaxy.datatypes.registry DEBUG 2024-02-23 12:54:50,496 [pN:main,p:69576,tN:MainThread] Loaded display application 'iobio_bam' for datatype 'bam', inherit=False. +galaxy.datatypes.registry DEBUG 2024-02-23 12:54:50,496 [pN:main,p:69576,tN:MainThread] Loaded display application 'igb_bed' for datatype 'bed', inherit=False. +galaxy.datatypes.registry DEBUG 2024-02-23 12:54:50,497 [pN:main,p:69576,tN:MainThread] Loaded display application 'igb_bedgraph' for datatype 'bedgraph', inherit=False. +galaxy.datatypes.registry DEBUG 2024-02-23 12:54:50,497 [pN:main,p:69576,tN:MainThread] Loaded display application 'ucsc_bigbed' for datatype 'bigbed', inherit=False. +galaxy.datatypes.registry DEBUG 2024-02-23 12:54:50,498 [pN:main,p:69576,tN:MainThread] Loaded display application 'igb_bb' for datatype 'bigbed', inherit=False. +galaxy.datatypes.registry DEBUG 2024-02-23 12:54:50,498 [pN:main,p:69576,tN:MainThread] Loaded display application 'ucsc_bigwig' for datatype 'bigwig', inherit=False. +galaxy.datatypes.registry DEBUG 2024-02-23 12:54:50,498 [pN:main,p:69576,tN:MainThread] Loaded display application 'igb_bigwig' for datatype 'bigwig', inherit=False. +galaxy.datatypes.registry DEBUG 2024-02-23 12:54:50,499 [pN:main,p:69576,tN:MainThread] Loaded display application 'igv_bigwig' for datatype 'bigwig', inherit=False. +galaxy.datatypes.display_applications.application ERROR 2024-02-23 12:54:50,499 [pN:main,p:69576,tN:MainThread] Error loading a set of Dynamic Display Application links: Unable to find data table named "intermine_simple_display". +galaxy.datatypes.registry DEBUG 2024-02-23 12:54:50,499 [pN:main,p:69576,tN:MainThread] Loaded display application 'intermine_simple' for datatype 'intermine_tabular', inherit=False. +galaxy.datatypes.display_applications.application ERROR 2024-02-23 12:54:50,500 [pN:main,p:69576,tN:MainThread] Error loading a set of Dynamic Display Application links: Unable to find data table named "igv_broad_genomes". +galaxy.datatypes.registry DEBUG 2024-02-23 12:54:50,500 [pN:main,p:69576,tN:MainThread] Loaded display application 'igv_fasta' for datatype 'fasta', inherit=True. +galaxy.datatypes.registry DEBUG 2024-02-23 12:54:50,501 [pN:main,p:69576,tN:MainThread] Loaded display application 'ensembl_gff' for datatype 'gff', inherit=True. +galaxy.datatypes.display_applications.application ERROR 2024-02-23 12:54:50,502 [pN:main,p:69576,tN:MainThread] Error loading a set of Dynamic Display Application links: Unable to find data table named "igv_broad_genomes". +galaxy.datatypes.registry DEBUG 2024-02-23 12:54:50,502 [pN:main,p:69576,tN:MainThread] Loaded display application 'igv_gff' for datatype 'gff', inherit=True. +galaxy.datatypes.registry DEBUG 2024-02-23 12:54:50,502 [pN:main,p:69576,tN:MainThread] Loaded display application 'igb_gtf' for datatype 'gtf', inherit=False. +galaxy.datatypes.registry DEBUG 2024-02-23 12:54:50,503 [pN:main,p:69576,tN:MainThread] Loaded display application 'ensembl_interval' for datatype 'interval', inherit=True. +galaxy.datatypes.registry DEBUG 2024-02-23 12:54:50,505 [pN:main,p:69576,tN:MainThread] Loaded display application 'gbrowse_interval_as_bed' for datatype 'interval', inherit=True. +galaxy.datatypes.registry DEBUG 2024-02-23 12:54:50,505 [pN:main,p:69576,tN:MainThread] Loaded display application 'rviewer_interval' for datatype 'interval', inherit=True. +galaxy.datatypes.display_applications.application ERROR 2024-02-23 12:54:50,506 [pN:main,p:69576,tN:MainThread] Error loading a set of Dynamic Display Application links: Unable to find data table named "igv_broad_genomes". +galaxy.datatypes.registry DEBUG 2024-02-23 12:54:50,506 [pN:main,p:69576,tN:MainThread] Loaded display application 'igv_interval_as_bed' for datatype 'interval', inherit=True. +galaxy.datatypes.registry DEBUG 2024-02-23 12:54:50,506 [pN:main,p:69576,tN:MainThread] Loaded display application 'avivator' for datatype 'ome.tiff', inherit=False. +galaxy.datatypes.display_applications.application ERROR 2024-02-23 12:54:50,506 [pN:main,p:69576,tN:MainThread] Error loading a set of Dynamic Display Application links: Unable to find data table named "q2view_display". +galaxy.datatypes.registry DEBUG 2024-02-23 12:54:50,506 [pN:main,p:69576,tN:MainThread] Loaded display application 'q2view' for datatype 'qza', inherit=False. +galaxy.datatypes.display_applications.application ERROR 2024-02-23 12:54:50,506 [pN:main,p:69576,tN:MainThread] Error loading a set of Dynamic Display Application links: Unable to find data table named "q2view_display". +galaxy.datatypes.registry DEBUG 2024-02-23 12:54:50,506 [pN:main,p:69576,tN:MainThread] Loaded display application 'q2view' for datatype 'qzv', inherit=False. +galaxy.datatypes.registry DEBUG 2024-02-23 12:54:50,507 [pN:main,p:69576,tN:MainThread] Loaded display application 'ucsc_maf_customtrack' for datatype 'mafcustomtrack', inherit=False. +galaxy.datatypes.registry DEBUG 2024-02-23 12:54:50,507 [pN:main,p:69576,tN:MainThread] Loaded display application 'minerva_tabular' for datatype 'tabular', inherit=False. +galaxy.datatypes.registry DEBUG 2024-02-23 12:54:50,508 [pN:main,p:69576,tN:MainThread] Loaded display application 'ucsc_vcf' for datatype 'vcf', inherit=False. +galaxy.datatypes.display_applications.application ERROR 2024-02-23 12:54:50,508 [pN:main,p:69576,tN:MainThread] Error loading a set of Dynamic Display Application links: Unable to find data table named "igv_broad_genomes". +galaxy.datatypes.registry DEBUG 2024-02-23 12:54:50,508 [pN:main,p:69576,tN:MainThread] Loaded display application 'igv_vcf' for datatype 'vcf', inherit=False. +galaxy.datatypes.registry DEBUG 2024-02-23 12:54:50,509 [pN:main,p:69576,tN:MainThread] Loaded display application 'rviewer_vcf' for datatype 'vcf', inherit=True. +galaxy.datatypes.display_applications.application ERROR 2024-02-23 12:54:50,509 [pN:main,p:69576,tN:MainThread] Error loading a set of Dynamic Display Application links: Unable to find data table named "vcf_iobio". +galaxy.datatypes.registry DEBUG 2024-02-23 12:54:50,509 [pN:main,p:69576,tN:MainThread] Loaded display application 'iobio_vcf' for datatype 'vcf', inherit=False. +galaxy.datatypes.registry DEBUG 2024-02-23 12:54:50,509 [pN:main,p:69576,tN:MainThread] Loaded display application 'igb_wig' for datatype 'wig', inherit=False. +galaxy.datatypes.display_applications.application ERROR 2024-02-23 12:54:50,510 [pN:main,p:69576,tN:MainThread] Error loading a set of Dynamic Display Application links: Unable to find data table named "igv_broad_genomes". +galaxy.datatypes.registry DEBUG 2024-02-23 12:54:50,510 [pN:main,p:69576,tN:MainThread] Loaded display application 'igv_vcf' for datatype 'vcf_bgzip', inherit=False. +galaxy.datatypes.display_applications.application ERROR 2024-02-23 12:54:50,510 [pN:main,p:69576,tN:MainThread] Error loading a set of Dynamic Display Application links: Unable to find data table named "igv_broad_genomes". +galaxy.datatypes.registry DEBUG 2024-02-23 12:54:50,510 [pN:main,p:69576,tN:MainThread] Loaded display application 'igv_genbank' for datatype 'genbank', inherit=False. +galaxy.datatypes.display_applications.application ERROR 2024-02-23 12:54:50,511 [pN:main,p:69576,tN:MainThread] Error loading a set of Dynamic Display Application links: Unable to find data table named "biom_simple_display". +galaxy.datatypes.registry DEBUG 2024-02-23 12:54:50,511 [pN:main,p:69576,tN:MainThread] Loaded display application 'biom_simple' for datatype 'biom1', inherit=False. +galaxy.datatypes.display_applications.application ERROR 2024-02-23 12:54:50,511 [pN:main,p:69576,tN:MainThread] Error loading a set of Dynamic Display Application links: Unable to find data table named "icn3d_simple_display". +galaxy.datatypes.registry DEBUG 2024-02-23 12:54:50,511 [pN:main,p:69576,tN:MainThread] Loaded display application 'icn3d_simple' for datatype 'sdf', inherit=False. +galaxy.datatypes.display_applications.application ERROR 2024-02-23 12:54:50,511 [pN:main,p:69576,tN:MainThread] Error loading a set of Dynamic Display Application links: Unable to find data table named "icn3d_simple_display". +galaxy.datatypes.registry DEBUG 2024-02-23 12:54:50,511 [pN:main,p:69576,tN:MainThread] Loaded display application 'icn3d_simple' for datatype 'mol2', inherit=False. +galaxy.datatypes.display_applications.application ERROR 2024-02-23 12:54:50,511 [pN:main,p:69576,tN:MainThread] Error loading a set of Dynamic Display Application links: Unable to find data table named "icn3d_simple_display". +galaxy.datatypes.registry DEBUG 2024-02-23 12:54:50,511 [pN:main,p:69576,tN:MainThread] Loaded display application 'icn3d_simple' for datatype 'pdb', inherit=False. +galaxy.datatypes.registry DEBUG 2024-02-23 12:54:50,512 [pN:main,p:69576,tN:MainThread] Loaded display application 'ucsc_trackhub' for datatype 'trackhub', inherit=False. +galaxy.datatypes.registry DEBUG 2024-02-23 12:54:50,512 [pN:main,p:69576,tN:MainThread] Adding inherited display application 'ensembl_interval' to datatype 'bed' +galaxy.datatypes.registry DEBUG 2024-02-23 12:54:50,512 [pN:main,p:69576,tN:MainThread] Adding inherited display application 'gbrowse_interval_as_bed' to datatype 'bed' +galaxy.datatypes.registry DEBUG 2024-02-23 12:54:50,512 [pN:main,p:69576,tN:MainThread] Adding inherited display application 'rviewer_interval' to datatype 'bed' +galaxy.datatypes.registry DEBUG 2024-02-23 12:54:50,512 [pN:main,p:69576,tN:MainThread] Adding inherited display application 'igv_interval_as_bed' to datatype 'bed' +galaxy.datatypes.registry DEBUG 2024-02-23 12:54:50,512 [pN:main,p:69576,tN:MainThread] Adding inherited display application 'ensembl_interval' to datatype 'bedgraph' +galaxy.datatypes.registry DEBUG 2024-02-23 12:54:50,512 [pN:main,p:69576,tN:MainThread] Adding inherited display application 'gbrowse_interval_as_bed' to datatype 'bedgraph' +galaxy.datatypes.registry DEBUG 2024-02-23 12:54:50,512 [pN:main,p:69576,tN:MainThread] Adding inherited display application 'rviewer_interval' to datatype 'bedgraph' +galaxy.datatypes.registry DEBUG 2024-02-23 12:54:50,512 [pN:main,p:69576,tN:MainThread] Adding inherited display application 'igv_interval_as_bed' to datatype 'bedgraph' +galaxy.datatypes.registry DEBUG 2024-02-23 12:54:50,512 [pN:main,p:69576,tN:MainThread] Adding inherited display application 'ensembl_interval' to datatype 'bedstrict' +galaxy.datatypes.registry DEBUG 2024-02-23 12:54:50,512 [pN:main,p:69576,tN:MainThread] Adding inherited display application 'gbrowse_interval_as_bed' to datatype 'bedstrict' +galaxy.datatypes.registry DEBUG 2024-02-23 12:54:50,512 [pN:main,p:69576,tN:MainThread] Adding inherited display application 'rviewer_interval' to datatype 'bedstrict' +galaxy.datatypes.registry DEBUG 2024-02-23 12:54:50,512 [pN:main,p:69576,tN:MainThread] Adding inherited display application 'igv_interval_as_bed' to datatype 'bedstrict' +galaxy.datatypes.registry DEBUG 2024-02-23 12:54:50,512 [pN:main,p:69576,tN:MainThread] Adding inherited display application 'ensembl_interval' to datatype 'bed6' +galaxy.datatypes.registry DEBUG 2024-02-23 12:54:50,512 [pN:main,p:69576,tN:MainThread] Adding inherited display application 'gbrowse_interval_as_bed' to datatype 'bed6' +galaxy.datatypes.registry DEBUG 2024-02-23 12:54:50,512 [pN:main,p:69576,tN:MainThread] Adding inherited display application 'rviewer_interval' to datatype 'bed6' +galaxy.datatypes.registry DEBUG 2024-02-23 12:54:50,512 [pN:main,p:69576,tN:MainThread] Adding inherited display application 'igv_interval_as_bed' to datatype 'bed6' +galaxy.datatypes.registry DEBUG 2024-02-23 12:54:50,513 [pN:main,p:69576,tN:MainThread] Adding inherited display application 'ensembl_interval' to datatype 'bed12' +galaxy.datatypes.registry DEBUG 2024-02-23 12:54:50,513 [pN:main,p:69576,tN:MainThread] Adding inherited display application 'gbrowse_interval_as_bed' to datatype 'bed12' +galaxy.datatypes.registry DEBUG 2024-02-23 12:54:50,513 [pN:main,p:69576,tN:MainThread] Adding inherited display application 'rviewer_interval' to datatype 'bed12' +galaxy.datatypes.registry DEBUG 2024-02-23 12:54:50,513 [pN:main,p:69576,tN:MainThread] Adding inherited display application 'igv_interval_as_bed' to datatype 'bed12' +galaxy.datatypes.registry DEBUG 2024-02-23 12:54:50,513 [pN:main,p:69576,tN:MainThread] Adding inherited display application 'ensembl_interval' to datatype 'probed' +galaxy.datatypes.registry DEBUG 2024-02-23 12:54:50,513 [pN:main,p:69576,tN:MainThread] Adding inherited display application 'gbrowse_interval_as_bed' to datatype 'probed' +galaxy.datatypes.registry DEBUG 2024-02-23 12:54:50,513 [pN:main,p:69576,tN:MainThread] Adding inherited display application 'rviewer_interval' to datatype 'probed' +galaxy.datatypes.registry DEBUG 2024-02-23 12:54:50,513 [pN:main,p:69576,tN:MainThread] Adding inherited display application 'igv_interval_as_bed' to datatype 'probed' +galaxy.datatypes.registry DEBUG 2024-02-23 12:54:50,513 [pN:main,p:69576,tN:MainThread] Adding inherited display application 'ensembl_interval' to datatype 'chrint' +galaxy.datatypes.registry DEBUG 2024-02-23 12:54:50,513 [pN:main,p:69576,tN:MainThread] Adding inherited display application 'gbrowse_interval_as_bed' to datatype 'chrint' +galaxy.datatypes.registry DEBUG 2024-02-23 12:54:50,513 [pN:main,p:69576,tN:MainThread] Adding inherited display application 'rviewer_interval' to datatype 'chrint' +galaxy.datatypes.registry DEBUG 2024-02-23 12:54:50,513 [pN:main,p:69576,tN:MainThread] Adding inherited display application 'igv_interval_as_bed' to datatype 'chrint' +galaxy.datatypes.registry DEBUG 2024-02-23 12:54:50,513 [pN:main,p:69576,tN:MainThread] Adding inherited display application 'igv_fasta' to datatype 'fasta.gz' +galaxy.datatypes.registry DEBUG 2024-02-23 12:54:50,513 [pN:main,p:69576,tN:MainThread] Adding inherited display application 'ensembl_gff' to datatype 'gff3' +galaxy.datatypes.registry DEBUG 2024-02-23 12:54:50,513 [pN:main,p:69576,tN:MainThread] Adding inherited display application 'igv_gff' to datatype 'gff3' +galaxy.datatypes.registry DEBUG 2024-02-23 12:54:50,513 [pN:main,p:69576,tN:MainThread] Adding inherited display application 'ensembl_gff' to datatype 'gff3.gz' +galaxy.datatypes.registry DEBUG 2024-02-23 12:54:50,514 [pN:main,p:69576,tN:MainThread] Adding inherited display application 'igv_gff' to datatype 'gff3.gz' +galaxy.datatypes.registry DEBUG 2024-02-23 12:54:50,514 [pN:main,p:69576,tN:MainThread] Adding inherited display application 'ensembl_gff' to datatype 'gff3.bz2' +galaxy.datatypes.registry DEBUG 2024-02-23 12:54:50,514 [pN:main,p:69576,tN:MainThread] Adding inherited display application 'igv_gff' to datatype 'gff3.bz2' +galaxy.datatypes.registry DEBUG 2024-02-23 12:54:50,514 [pN:main,p:69576,tN:MainThread] Adding inherited display application 'ensembl_gff' to datatype 'gtf' +galaxy.datatypes.registry DEBUG 2024-02-23 12:54:50,514 [pN:main,p:69576,tN:MainThread] Adding inherited display application 'igv_gff' to datatype 'gtf' +galaxy.datatypes.registry DEBUG 2024-02-23 12:54:50,515 [pN:main,p:69576,tN:MainThread] Adding inherited display application 'ensembl_interval' to datatype 'encodepeak' +galaxy.datatypes.registry DEBUG 2024-02-23 12:54:50,515 [pN:main,p:69576,tN:MainThread] Adding inherited display application 'gbrowse_interval_as_bed' to datatype 'encodepeak' +galaxy.datatypes.registry DEBUG 2024-02-23 12:54:50,515 [pN:main,p:69576,tN:MainThread] Adding inherited display application 'rviewer_interval' to datatype 'encodepeak' +galaxy.datatypes.registry DEBUG 2024-02-23 12:54:50,515 [pN:main,p:69576,tN:MainThread] Adding inherited display application 'igv_interval_as_bed' to datatype 'encodepeak' +galaxy.datatypes.registry DEBUG 2024-02-23 12:54:50,515 [pN:main,p:69576,tN:MainThread] Adding inherited display application 'igv_fasta' to datatype 'sequences' +galaxy.datatypes.registry DEBUG 2024-02-23 12:54:50,515 [pN:main,p:69576,tN:MainThread] Adding inherited display application 'ensembl_interval' to datatype 'interval_tabix.gz' +galaxy.datatypes.registry DEBUG 2024-02-23 12:54:50,515 [pN:main,p:69576,tN:MainThread] Adding inherited display application 'gbrowse_interval_as_bed' to datatype 'interval_tabix.gz' +galaxy.datatypes.registry DEBUG 2024-02-23 12:54:50,515 [pN:main,p:69576,tN:MainThread] Adding inherited display application 'rviewer_interval' to datatype 'interval_tabix.gz' +galaxy.datatypes.registry DEBUG 2024-02-23 12:54:50,515 [pN:main,p:69576,tN:MainThread] Adding inherited display application 'igv_interval_as_bed' to datatype 'interval_tabix.gz' +galaxy.datatypes.registry DEBUG 2024-02-23 12:54:50,515 [pN:main,p:69576,tN:MainThread] Adding inherited display application 'ensembl_interval' to datatype 'juicer_medium_tabix.gz' +galaxy.datatypes.registry DEBUG 2024-02-23 12:54:50,515 [pN:main,p:69576,tN:MainThread] Adding inherited display application 'gbrowse_interval_as_bed' to datatype 'juicer_medium_tabix.gz' +galaxy.datatypes.registry DEBUG 2024-02-23 12:54:50,515 [pN:main,p:69576,tN:MainThread] Adding inherited display application 'rviewer_interval' to datatype 'juicer_medium_tabix.gz' +galaxy.datatypes.registry DEBUG 2024-02-23 12:54:50,516 [pN:main,p:69576,tN:MainThread] Adding inherited display application 'igv_interval_as_bed' to datatype 'juicer_medium_tabix.gz' +galaxy.datatypes.registry DEBUG 2024-02-23 12:54:50,516 [pN:main,p:69576,tN:MainThread] Adding inherited display application 'ensembl_interval' to datatype 'bed_tabix.gz' +galaxy.datatypes.registry DEBUG 2024-02-23 12:54:50,516 [pN:main,p:69576,tN:MainThread] Adding inherited display application 'gbrowse_interval_as_bed' to datatype 'bed_tabix.gz' +galaxy.datatypes.registry DEBUG 2024-02-23 12:54:50,516 [pN:main,p:69576,tN:MainThread] Adding inherited display application 'rviewer_interval' to datatype 'bed_tabix.gz' +galaxy.datatypes.registry DEBUG 2024-02-23 12:54:50,516 [pN:main,p:69576,tN:MainThread] Adding inherited display application 'igv_interval_as_bed' to datatype 'bed_tabix.gz' +galaxy.datatypes.registry DEBUG 2024-02-23 12:54:50,516 [pN:main,p:69576,tN:MainThread] Adding inherited display application 'ensembl_interval' to datatype 'gff_tabix.gz' +galaxy.datatypes.registry DEBUG 2024-02-23 12:54:50,516 [pN:main,p:69576,tN:MainThread] Adding inherited display application 'gbrowse_interval_as_bed' to datatype 'gff_tabix.gz' +galaxy.datatypes.registry DEBUG 2024-02-23 12:54:50,516 [pN:main,p:69576,tN:MainThread] Adding inherited display application 'rviewer_interval' to datatype 'gff_tabix.gz' +galaxy.datatypes.registry DEBUG 2024-02-23 12:54:50,516 [pN:main,p:69576,tN:MainThread] Adding inherited display application 'igv_interval_as_bed' to datatype 'gff_tabix.gz' +galaxy.datatypes.registry DEBUG 2024-02-23 12:54:50,517 [pN:main,p:69576,tN:MainThread] Adding inherited display application 'igv_fasta' to datatype 'mothur.align' +galaxy.datatypes.registry DEBUG 2024-02-23 12:54:50,520 [pN:main,p:69576,tN:MainThread] Loaded converter: CONVERTER_uncompressed_to_gz +galaxy.datatypes.registry DEBUG 2024-02-23 12:54:50,521 [pN:main,p:69576,tN:MainThread] Loaded converter: CONVERTER_gz_to_uncompressed +galaxy.datatypes.registry DEBUG 2024-02-23 12:54:50,522 [pN:main,p:69576,tN:MainThread] Loaded converter: CONVERTER_uncompressed_to_gz +galaxy.datatypes.registry DEBUG 2024-02-23 12:54:50,523 [pN:main,p:69576,tN:MainThread] Loaded converter: CONVERTER_gz_to_uncompressed +galaxy.datatypes.registry DEBUG 2024-02-23 12:54:50,525 [pN:main,p:69576,tN:MainThread] Loaded converter: CONVERTER_uncompressed_to_gz +galaxy.datatypes.registry DEBUG 2024-02-23 12:54:50,526 [pN:main,p:69576,tN:MainThread] Loaded converter: CONVERTER_gz_to_uncompressed +galaxy.datatypes.registry DEBUG 2024-02-23 12:54:50,527 [pN:main,p:69576,tN:MainThread] Loaded converter: CONVERTER_Bam_Bai_0 +galaxy.datatypes.registry DEBUG 2024-02-23 12:54:50,528 [pN:main,p:69576,tN:MainThread] Loaded converter: CONVERTER_bam_to_bigwig_0 +galaxy.datatypes.registry DEBUG 2024-02-23 12:54:50,529 [pN:main,p:69576,tN:MainThread] Loaded converter: CONVERTER_bam_to_qname_sorted_bam +galaxy.datatypes.registry DEBUG 2024-02-23 12:54:50,530 [pN:main,p:69576,tN:MainThread] Loaded converter: CONVERTER_bam_to_bigwig_0 +galaxy.datatypes.registry DEBUG 2024-02-23 12:54:50,531 [pN:main,p:69576,tN:MainThread] Loaded converter: CONVERTER_bam_to_coodinate_sorted_bam +galaxy.datatypes.registry DEBUG 2024-02-23 12:54:50,532 [pN:main,p:69576,tN:MainThread] Loaded converter: CONVERTER_bam_to_qname_sorted_bam +galaxy.datatypes.registry DEBUG 2024-02-23 12:54:50,533 [pN:main,p:69576,tN:MainThread] Loaded converter: CONVERTER_cram_to_bam_0 +galaxy.datatypes.registry DEBUG 2024-02-23 12:54:50,534 [pN:main,p:69576,tN:MainThread] Loaded converter: CONVERTER_bed_to_gff_0 +galaxy.datatypes.registry DEBUG 2024-02-23 12:54:50,537 [pN:main,p:69576,tN:MainThread] Loaded converter: CONVERTER_interval_to_bgzip_0 +galaxy.datatypes.registry DEBUG 2024-02-23 12:54:50,539 [pN:main,p:69576,tN:MainThread] Loaded converter: CONVERTER_interval_to_tabix_0 +galaxy.datatypes.registry DEBUG 2024-02-23 12:54:50,540 [pN:main,p:69576,tN:MainThread] Loaded converter: CONVERTER_bed_gff_or_vcf_to_bigwig_0 +galaxy.datatypes.registry DEBUG 2024-02-23 12:54:50,540 [pN:main,p:69576,tN:MainThread] Loaded converter: CONVERTER_bed_to_fli_0 +galaxy.datatypes.registry DEBUG 2024-02-23 12:54:50,541 [pN:main,p:69576,tN:MainThread] Loaded converter: CONVERTER_bedgraph_to_bigwig +galaxy.datatypes.registry DEBUG 2024-02-23 12:54:50,542 [pN:main,p:69576,tN:MainThread] Loaded converter: CONVERTER_len_to_linecount +galaxy.datatypes.registry DEBUG 2024-02-23 12:54:50,543 [pN:main,p:69576,tN:MainThread] Loaded converter: CONVERTER_parquet_to_csv +galaxy.datatypes.registry DEBUG 2024-02-23 12:54:50,546 [pN:main,p:69576,tN:MainThread] Loaded converter: bigwigtowig +galaxy.datatypes.registry DEBUG 2024-02-23 12:54:50,548 [pN:main,p:69576,tN:MainThread] Loaded converter: CONVERTER_interval_to_bgzip_0 +galaxy.datatypes.registry DEBUG 2024-02-23 12:54:50,550 [pN:main,p:69576,tN:MainThread] Loaded converter: CONVERTER_interval_to_tabix_0 +galaxy.datatypes.registry DEBUG 2024-02-23 12:54:50,551 [pN:main,p:69576,tN:MainThread] Loaded converter: CONVERTER_bed_gff_or_vcf_to_bigwig_0 +galaxy.datatypes.registry DEBUG 2024-02-23 12:54:50,552 [pN:main,p:69576,tN:MainThread] Loaded converter: csv_to_tabular +galaxy.datatypes.registry DEBUG 2024-02-23 12:54:50,553 [pN:main,p:69576,tN:MainThread] Loaded converter: tabular_to_csv +galaxy.datatypes.registry DEBUG 2024-02-23 12:54:50,554 [pN:main,p:69576,tN:MainThread] Loaded converter: CONVERTER_fasta_to_tabular +galaxy.datatypes.registry DEBUG 2024-02-23 12:54:50,555 [pN:main,p:69576,tN:MainThread] Loaded converter: CONVERTER_fasta_to_bowtie_base_index +galaxy.datatypes.registry DEBUG 2024-02-23 12:54:50,556 [pN:main,p:69576,tN:MainThread] Loaded converter: CONVERTER_fasta_to_bowtie_color_index +galaxy.datatypes.registry DEBUG 2024-02-23 12:54:50,557 [pN:main,p:69576,tN:MainThread] Loaded converter: CONVERTER_fasta_to_2bit +galaxy.datatypes.registry DEBUG 2024-02-23 12:54:50,558 [pN:main,p:69576,tN:MainThread] Loaded converter: CONVERTER_fasta_to_len +galaxy.datatypes.registry DEBUG 2024-02-23 12:54:50,559 [pN:main,p:69576,tN:MainThread] Loaded converter: CONVERTER_fasta_to_fai +galaxy.datatypes.registry DEBUG 2024-02-23 12:54:50,561 [pN:main,p:69576,tN:MainThread] Loaded converter: CONVERTER_uncompressed_to_gz +galaxy.datatypes.registry DEBUG 2024-02-23 12:54:50,562 [pN:main,p:69576,tN:MainThread] Loaded converter: CONVERTER_gz_to_uncompressed +galaxy.datatypes.registry DEBUG 2024-02-23 12:54:50,563 [pN:main,p:69576,tN:MainThread] Loaded converter: CONVERTER_fastq_to_fqtoc0 +galaxy.datatypes.registry DEBUG 2024-02-23 12:54:50,564 [pN:main,p:69576,tN:MainThread] Loaded converter: CONVERTER_uncompressed_to_gz +galaxy.datatypes.registry DEBUG 2024-02-23 12:54:50,565 [pN:main,p:69576,tN:MainThread] Loaded converter: CONVERTER_gz_to_uncompressed +galaxy.datatypes.registry DEBUG 2024-02-23 12:54:50,566 [pN:main,p:69576,tN:MainThread] Loaded converter: CONVERTER_bz2_to_uncompressed +galaxy.datatypes.registry DEBUG 2024-02-23 12:54:50,567 [pN:main,p:69576,tN:MainThread] Loaded converter: CONVERTER_fastq_to_fqtoc0 +galaxy.datatypes.registry DEBUG 2024-02-23 12:54:50,569 [pN:main,p:69576,tN:MainThread] Loaded converter: CONVERTER_uncompressed_to_gz +galaxy.datatypes.registry DEBUG 2024-02-23 12:54:50,570 [pN:main,p:69576,tN:MainThread] Loaded converter: CONVERTER_gz_to_uncompressed +galaxy.datatypes.registry DEBUG 2024-02-23 12:54:50,571 [pN:main,p:69576,tN:MainThread] Loaded converter: CONVERTER_bz2_to_uncompressed +galaxy.datatypes.registry DEBUG 2024-02-23 12:54:50,572 [pN:main,p:69576,tN:MainThread] Loaded converter: CONVERTER_fastq_to_fqtoc0 +galaxy.datatypes.registry DEBUG 2024-02-23 12:54:50,573 [pN:main,p:69576,tN:MainThread] Loaded converter: CONVERTER_uncompressed_to_gz +galaxy.datatypes.registry DEBUG 2024-02-23 12:54:50,574 [pN:main,p:69576,tN:MainThread] Loaded converter: CONVERTER_gz_to_uncompressed +galaxy.datatypes.registry DEBUG 2024-02-23 12:54:50,576 [pN:main,p:69576,tN:MainThread] Loaded converter: CONVERTER_bz2_to_uncompressed +galaxy.datatypes.registry DEBUG 2024-02-23 12:54:50,577 [pN:main,p:69576,tN:MainThread] Loaded converter: CONVERTER_fastq_to_fqtoc0 +galaxy.datatypes.registry DEBUG 2024-02-23 12:54:50,578 [pN:main,p:69576,tN:MainThread] Loaded converter: CONVERTER_uncompressed_to_gz +galaxy.datatypes.registry DEBUG 2024-02-23 12:54:50,580 [pN:main,p:69576,tN:MainThread] Loaded converter: CONVERTER_gz_to_uncompressed +galaxy.datatypes.registry DEBUG 2024-02-23 12:54:50,581 [pN:main,p:69576,tN:MainThread] Loaded converter: CONVERTER_bz2_to_uncompressed +galaxy.datatypes.registry DEBUG 2024-02-23 12:54:50,582 [pN:main,p:69576,tN:MainThread] Loaded converter: CONVERTER_fastq_to_fqtoc0 +galaxy.datatypes.registry DEBUG 2024-02-23 12:54:50,584 [pN:main,p:69576,tN:MainThread] Loaded converter: CONVERTER_uncompressed_to_gz +galaxy.datatypes.registry DEBUG 2024-02-23 12:54:50,585 [pN:main,p:69576,tN:MainThread] Loaded converter: CONVERTER_gz_to_uncompressed +galaxy.datatypes.registry DEBUG 2024-02-23 12:54:50,586 [pN:main,p:69576,tN:MainThread] Loaded converter: CONVERTER_bz2_to_uncompressed +galaxy.datatypes.registry DEBUG 2024-02-23 12:54:50,587 [pN:main,p:69576,tN:MainThread] Loaded converter: CONVERTER_gff_to_bed_0 +galaxy.datatypes.registry DEBUG 2024-02-23 12:54:50,588 [pN:main,p:69576,tN:MainThread] Loaded converter: CONVERTER_gff_to_interval_index_0 +galaxy.datatypes.registry DEBUG 2024-02-23 12:54:50,589 [pN:main,p:69576,tN:MainThread] Loaded converter: CONVERTER_bed_gff_or_vcf_to_bigwig_0 +galaxy.datatypes.registry DEBUG 2024-02-23 12:54:50,590 [pN:main,p:69576,tN:MainThread] Loaded converter: CONVERTER_gff_to_fli_0 +galaxy.datatypes.registry DEBUG 2024-02-23 12:54:50,593 [pN:main,p:69576,tN:MainThread] Loaded converter: CONVERTER_interval_to_bgzip_0 +galaxy.datatypes.registry DEBUG 2024-02-23 12:54:50,595 [pN:main,p:69576,tN:MainThread] Loaded converter: CONVERTER_interval_to_tabix_0 +galaxy.datatypes.registry DEBUG 2024-02-23 12:54:50,596 [pN:main,p:69576,tN:MainThread] Loaded converter: CONVERTER_uncompressed_to_gz +galaxy.datatypes.registry DEBUG 2024-02-23 12:54:50,597 [pN:main,p:69576,tN:MainThread] Loaded converter: CONVERTER_gz_to_uncompressed +galaxy.datatypes.registry DEBUG 2024-02-23 12:54:50,598 [pN:main,p:69576,tN:MainThread] Loaded converter: CONVERTER_bz2_to_uncompressed +galaxy.datatypes.registry DEBUG 2024-02-23 12:54:50,599 [pN:main,p:69576,tN:MainThread] Loaded converter: CONVERTER_gff_to_interval_index_0 +galaxy.datatypes.registry DEBUG 2024-02-23 12:54:50,600 [pN:main,p:69576,tN:MainThread] Loaded converter: CONVERTER_bed_gff_or_vcf_to_bigwig_0 +galaxy.datatypes.registry DEBUG 2024-02-23 12:54:50,601 [pN:main,p:69576,tN:MainThread] Loaded converter: CONVERTER_interval_to_bed_0 +galaxy.datatypes.registry DEBUG 2024-02-23 12:54:50,602 [pN:main,p:69576,tN:MainThread] Loaded converter: CONVERTER_interval_to_bedstrict_0 +galaxy.datatypes.registry DEBUG 2024-02-23 12:54:50,603 [pN:main,p:69576,tN:MainThread] Loaded converter: CONVERTER_interval_to_bed6_0 +galaxy.datatypes.registry DEBUG 2024-02-23 12:54:50,605 [pN:main,p:69576,tN:MainThread] Loaded converter: CONVERTER_interval_to_bed12_0 +galaxy.datatypes.registry DEBUG 2024-02-23 12:54:50,607 [pN:main,p:69576,tN:MainThread] Loaded converter: CONVERTER_interval_to_bgzip_0 +galaxy.datatypes.registry DEBUG 2024-02-23 12:54:50,609 [pN:main,p:69576,tN:MainThread] Loaded converter: CONVERTER_interval_to_tabix_0 +galaxy.datatypes.registry DEBUG 2024-02-23 12:54:50,610 [pN:main,p:69576,tN:MainThread] Loaded converter: CONVERTER_interval_to_bigwig_0 +galaxy.datatypes.registry DEBUG 2024-02-23 12:54:50,611 [pN:main,p:69576,tN:MainThread] Loaded converter: CONVERTER_picard_interval_list_to_bed6 +galaxy.datatypes.registry DEBUG 2024-02-23 12:54:50,612 [pN:main,p:69576,tN:MainThread] Loaded converter: CONVERTER_tar_to_directory +galaxy.datatypes.registry DEBUG 2024-02-23 12:54:50,614 [pN:main,p:69576,tN:MainThread] Loaded converter: CONVERTER_uncompressed_to_gz +galaxy.datatypes.registry DEBUG 2024-02-23 12:54:50,615 [pN:main,p:69576,tN:MainThread] Loaded converter: CONVERTER_gz_to_uncompressed +galaxy.datatypes.registry DEBUG 2024-02-23 12:54:50,616 [pN:main,p:69576,tN:MainThread] Loaded converter: CONVERTER_uncompressed_to_gz +galaxy.datatypes.registry DEBUG 2024-02-23 12:54:50,617 [pN:main,p:69576,tN:MainThread] Loaded converter: CONVERTER_gz_to_uncompressed +galaxy.datatypes.registry DEBUG 2024-02-23 12:54:50,619 [pN:main,p:69576,tN:MainThread] Loaded converter: CONVERTER_uncompressed_to_gz +galaxy.datatypes.registry DEBUG 2024-02-23 12:54:50,620 [pN:main,p:69576,tN:MainThread] Loaded converter: CONVERTER_gz_to_uncompressed +galaxy.datatypes.registry DEBUG 2024-02-23 12:54:50,621 [pN:main,p:69576,tN:MainThread] Loaded converter: CONVERTER_maf_to_fasta_0 +galaxy.datatypes.registry DEBUG 2024-02-23 12:54:50,622 [pN:main,p:69576,tN:MainThread] Loaded converter: CONVERTER_maf_to_interval_0 +galaxy.datatypes.registry DEBUG 2024-02-23 12:54:50,624 [pN:main,p:69576,tN:MainThread] Loaded converter: CONVERTER_interval_to_tabix_0 +galaxy.datatypes.registry DEBUG 2024-02-23 12:54:50,626 [pN:main,p:69576,tN:MainThread] Loaded converter: CONVERTER_interval_to_bgzip_0 +galaxy.datatypes.registry DEBUG 2024-02-23 12:54:50,627 [pN:main,p:69576,tN:MainThread] Loaded converter: CONVERTER_bed_gff_or_vcf_to_bigwig_0 +galaxy.datatypes.registry DEBUG 2024-02-23 12:54:50,629 [pN:main,p:69576,tN:MainThread] Loaded converter: CONVERTER_interval_to_bgzip_0 +galaxy.datatypes.registry DEBUG 2024-02-23 12:54:50,632 [pN:main,p:69576,tN:MainThread] Loaded converter: CONVERTER_interval_to_tabix_0 +galaxy.datatypes.registry DEBUG 2024-02-23 12:54:50,633 [pN:main,p:69576,tN:MainThread] Loaded converter: CONVERTER_sam_to_unsorted_bam +galaxy.datatypes.registry DEBUG 2024-02-23 12:54:50,634 [pN:main,p:69576,tN:MainThread] Loaded converter: CONVERTER_bam_to_coodinate_sorted_bam +galaxy.datatypes.registry DEBUG 2024-02-23 12:54:50,635 [pN:main,p:69576,tN:MainThread] Loaded converter: CONVERTER_bam_to_qname_sorted_bam +galaxy.datatypes.registry DEBUG 2024-02-23 12:54:50,636 [pN:main,p:69576,tN:MainThread] Loaded converter: CONVERTER_sam_to_bigwig_0 +galaxy.datatypes.registry DEBUG 2024-02-23 12:54:50,637 [pN:main,p:69576,tN:MainThread] Loaded converter: tabular_to_dbnsfp +galaxy.datatypes.registry DEBUG 2024-02-23 12:54:50,638 [pN:main,p:69576,tN:MainThread] Loaded converter: tabular_to_csv +galaxy.datatypes.registry DEBUG 2024-02-23 12:54:50,639 [pN:main,p:69576,tN:MainThread] Loaded converter: CONVERTER_uncompressed_to_gz +galaxy.datatypes.registry DEBUG 2024-02-23 12:54:50,640 [pN:main,p:69576,tN:MainThread] Loaded converter: CONVERTER_gz_to_uncompressed +galaxy.datatypes.registry DEBUG 2024-02-23 12:54:50,643 [pN:main,p:69576,tN:MainThread] Loaded converter: CONVERTER_interval_to_bgzip_0 +galaxy.datatypes.registry DEBUG 2024-02-23 12:54:50,644 [pN:main,p:69576,tN:MainThread] Loaded converter: CONVERTER_vcf_to_vcf_bgzip_0 +galaxy.datatypes.registry DEBUG 2024-02-23 12:54:50,646 [pN:main,p:69576,tN:MainThread] Loaded converter: CONVERTER_interval_to_tabix_0 +galaxy.datatypes.registry DEBUG 2024-02-23 12:54:50,647 [pN:main,p:69576,tN:MainThread] Loaded converter: CONVERTER_bed_gff_or_vcf_to_bigwig_0 +galaxy.datatypes.registry DEBUG 2024-02-23 12:54:50,648 [pN:main,p:69576,tN:MainThread] Loaded converter: CONVERTER_uncompressed_to_gz +galaxy.datatypes.registry DEBUG 2024-02-23 12:54:50,649 [pN:main,p:69576,tN:MainThread] Loaded converter: CONVERTER_bcf_uncompressed_to_bcf +galaxy.datatypes.registry DEBUG 2024-02-23 12:54:50,651 [pN:main,p:69576,tN:MainThread] Loaded converter: CONVERTER_bcf_uncompressed_to_bcf +galaxy.datatypes.registry DEBUG 2024-02-23 12:54:50,652 [pN:main,p:69576,tN:MainThread] Loaded converter: CONVERTER_wig_to_bigwig +galaxy.datatypes.registry DEBUG 2024-02-23 12:54:50,653 [pN:main,p:69576,tN:MainThread] Loaded converter: CONVERTER_wiggle_to_interval_0 +galaxy.datatypes.registry DEBUG 2024-02-23 12:54:50,654 [pN:main,p:69576,tN:MainThread] Loaded converter: CONVERTER_vcf_bgzip_to_tabix_0 +galaxy.datatypes.registry DEBUG 2024-02-23 12:54:50,655 [pN:main,p:69576,tN:MainThread] Loaded converter: CONVERTER_gz_to_uncompressed +galaxy.datatypes.registry DEBUG 2024-02-23 12:54:50,656 [pN:main,p:69576,tN:MainThread] Loaded converter: lped2fpedconvert +galaxy.datatypes.registry DEBUG 2024-02-23 12:54:50,656 [pN:main,p:69576,tN:MainThread] Loaded converter: lped2pbedconvert +galaxy.datatypes.registry DEBUG 2024-02-23 12:54:50,657 [pN:main,p:69576,tN:MainThread] Loaded converter: pbed2lpedconvert +galaxy.datatypes.registry DEBUG 2024-02-23 12:54:50,658 [pN:main,p:69576,tN:MainThread] Loaded converter: pbed2ldindepconvert +galaxy.datatypes.registry DEBUG 2024-02-23 12:54:50,660 [pN:main,p:69576,tN:MainThread] Loaded converter: CONVERTER_uncompressed_to_gz +galaxy.datatypes.registry DEBUG 2024-02-23 12:54:50,661 [pN:main,p:69576,tN:MainThread] Loaded converter: CONVERTER_gz_to_uncompressed +galaxy.datatypes.registry DEBUG 2024-02-23 12:54:50,662 [pN:main,p:69576,tN:MainThread] Loaded converter: CONVERTER_biom +galaxy.datatypes.registry DEBUG 2024-02-23 12:54:50,664 [pN:main,p:69576,tN:MainThread] Loaded converter: CONVERTER_biom +galaxy.datatypes.registry DEBUG 2024-02-23 12:54:50,669 [pN:main,p:69576,tN:MainThread] Loaded converter: CONVERTER_molecules +galaxy.datatypes.registry DEBUG 2024-02-23 12:54:50,674 [pN:main,p:69576,tN:MainThread] Loaded converter: CONVERTER_molecules +galaxy.datatypes.registry DEBUG 2024-02-23 12:54:50,679 [pN:main,p:69576,tN:MainThread] Loaded converter: CONVERTER_molecules +galaxy.datatypes.registry DEBUG 2024-02-23 12:54:50,680 [pN:main,p:69576,tN:MainThread] Loaded converter: CONVERTER_SMILES_to_MOL +galaxy.datatypes.registry DEBUG 2024-02-23 12:54:50,684 [pN:main,p:69576,tN:MainThread] Loaded converter: CONVERTER_molecules +galaxy.datatypes.registry DEBUG 2024-02-23 12:54:50,686 [pN:main,p:69576,tN:MainThread] Loaded converter: CONVERTER_smiles_to_smiles +galaxy.datatypes.registry DEBUG 2024-02-23 12:54:50,691 [pN:main,p:69576,tN:MainThread] Loaded converter: CONVERTER_molecules +galaxy.datatypes.registry DEBUG 2024-02-23 12:54:50,695 [pN:main,p:69576,tN:MainThread] Loaded converter: CONVERTER_molecules +galaxy.datatypes.registry DEBUG 2024-02-23 12:54:50,700 [pN:main,p:69576,tN:MainThread] Loaded converter: CONVERTER_molecules +galaxy.datatypes.registry DEBUG 2024-02-23 12:54:50,705 [pN:main,p:69576,tN:MainThread] Loaded converter: CONVERTER_molecules +galaxy.datatypes.registry DEBUG 2024-02-23 12:54:50,710 [pN:main,p:69576,tN:MainThread] Loaded converter: CONVERTER_molecules +galaxy.datatypes.registry DEBUG 2024-02-23 12:54:50,715 [pN:main,p:69576,tN:MainThread] Loaded converter: CONVERTER_molecules +galaxy.datatypes.registry DEBUG 2024-02-23 12:54:50,716 [pN:main,p:69576,tN:MainThread] Loaded converter: CONVERTER_inchi_to_mol +galaxy.datatypes.registry DEBUG 2024-02-23 12:54:50,720 [pN:main,p:69576,tN:MainThread] Loaded converter: CONVERTER_molecules +galaxy.datatypes.registry DEBUG 2024-02-23 12:54:50,725 [pN:main,p:69576,tN:MainThread] Loaded converter: CONVERTER_molecules +galaxy.datatypes.registry DEBUG 2024-02-23 12:54:50,730 [pN:main,p:69576,tN:MainThread] Loaded converter: CONVERTER_molecules +galaxy.datatypes.registry DEBUG 2024-02-23 12:54:50,735 [pN:main,p:69576,tN:MainThread] Loaded converter: CONVERTER_molecules +galaxy.datatypes.registry DEBUG 2024-02-23 12:54:50,740 [pN:main,p:69576,tN:MainThread] Loaded converter: CONVERTER_molecules +galaxy.datatypes.registry DEBUG 2024-02-23 12:54:50,745 [pN:main,p:69576,tN:MainThread] Loaded converter: CONVERTER_molecules +galaxy.datatypes.registry DEBUG 2024-02-23 12:54:50,750 [pN:main,p:69576,tN:MainThread] Loaded converter: CONVERTER_molecules +galaxy.datatypes.registry DEBUG 2024-02-23 12:54:50,755 [pN:main,p:69576,tN:MainThread] Loaded converter: CONVERTER_molecules +galaxy.datatypes.registry DEBUG 2024-02-23 12:54:50,760 [pN:main,p:69576,tN:MainThread] Loaded converter: CONVERTER_molecules +galaxy.datatypes.registry DEBUG 2024-02-23 12:54:50,765 [pN:main,p:69576,tN:MainThread] Loaded converter: CONVERTER_molecules +galaxy.datatypes.registry DEBUG 2024-02-23 12:54:50,766 [pN:main,p:69576,tN:MainThread] Loaded converter: CONVERTER_mol2_to_mol +galaxy.datatypes.registry DEBUG 2024-02-23 12:54:50,771 [pN:main,p:69576,tN:MainThread] Loaded converter: CONVERTER_molecules +galaxy.datatypes.registry DEBUG 2024-02-23 12:54:50,772 [pN:main,p:69576,tN:MainThread] Loaded converter: CONVERTER_cml_to_smiles +galaxy.datatypes.registry DEBUG 2024-02-23 12:54:50,777 [pN:main,p:69576,tN:MainThread] Loaded converter: CONVERTER_molecules +galaxy.datatypes.registry DEBUG 2024-02-23 12:54:50,782 [pN:main,p:69576,tN:MainThread] Loaded converter: CONVERTER_molecules +galaxy.datatypes.registry DEBUG 2024-02-23 12:54:50,786 [pN:main,p:69576,tN:MainThread] Loaded converter: CONVERTER_molecules +galaxy.datatypes.registry DEBUG 2024-02-23 12:54:50,788 [pN:main,p:69576,tN:MainThread] Loaded converter: CONVERTER_Pdb_to_Gro_0 +galaxy.datatypes.registry DEBUG 2024-02-23 12:54:50,789 [pN:main,p:69576,tN:MainThread] Loaded converter: CONVERTER_mdconvert +galaxy.datatypes.registry DEBUG 2024-02-23 12:54:50,791 [pN:main,p:69576,tN:MainThread] Loaded converter: CONVERTER_mdconvert +galaxy.datatypes.registry DEBUG 2024-02-23 12:54:50,793 [pN:main,p:69576,tN:MainThread] Loaded converter: CONVERTER_mdconvert +galaxy.datatypes.registry DEBUG 2024-02-23 12:54:50,795 [pN:main,p:69576,tN:MainThread] Loaded converter: CONVERTER_mdconvert +galaxy.datatypes.registry DEBUG 2024-02-23 12:54:50,797 [pN:main,p:69576,tN:MainThread] Loaded converter: CONVERTER_mdconvert +galaxy.datatypes.registry DEBUG 2024-02-23 12:54:50,799 [pN:main,p:69576,tN:MainThread] Loaded converter: CONVERTER_mdconvert +galaxy.datatypes.registry DEBUG 2024-02-23 12:54:50,800 [pN:main,p:69576,tN:MainThread] Loaded converter: CONVERTER_Gro_to_Pdb_0 +galaxy.datatypes.registry DEBUG 2024-02-23 12:54:50,801 [pN:main,p:69576,tN:MainThread] Loaded converter: CONVERTER_ref_to_seq_taxomony +galaxy.datatypes.registry DEBUG 2024-02-23 12:54:50,802 [pN:main,p:69576,tN:MainThread] Loaded converter: CONVERTER_neostorezip_to_neostore +galaxy.datatypes.registry DEBUG 2024-02-23 12:54:50,804 [pN:main,p:69576,tN:MainThread] Loaded external metadata tool: __SET_METADATA__ +galaxy.tools.special_tools DEBUG 2024-02-23 12:54:50,805 [pN:main,p:69576,tN:MainThread] Loaded history export tool: __EXPORT_HISTORY__ +galaxy.tools.special_tools DEBUG 2024-02-23 12:54:50,806 [pN:main,p:69576,tN:MainThread] Loaded history export to uri tool: __EXPORT_HISTORY_TO_URI__ +galaxy.tools.special_tools DEBUG 2024-02-23 12:54:50,807 [pN:main,p:69576,tN:MainThread] Loaded history import tool: __IMPORT_HISTORY__ +galaxy.tools.special_tools DEBUG 2024-02-23 12:54:50,808 [pN:main,p:69576,tN:MainThread] Loaded data fetch tool: __DATA_FETCH__ +galaxy.visualization.plugins.registry INFO 2024-02-23 12:54:50,809 [pN:main,p:69576,tN:MainThread] VisualizationsRegistry, loaded plugin: PCA_3Dplot +galaxy.visualization.plugins.registry INFO 2024-02-23 12:54:50,810 [pN:main,p:69576,tN:MainThread] VisualizationsRegistry, loaded plugin: aequatus +galaxy.visualization.plugins.registry INFO 2024-02-23 12:54:50,810 [pN:main,p:69576,tN:MainThread] VisualizationsRegistry, loaded plugin: annotate_image +galaxy.visualization.plugins.config_parser INFO 2024-02-23 12:54:50,811 [pN:main,p:69576,tN:MainThread] template syntax is deprecated: use entry_point instead +galaxy.visualization.plugins.registry INFO 2024-02-23 12:54:50,811 [pN:main,p:69576,tN:MainThread] VisualizationsRegistry, loaded plugin: chiraviz +galaxy.visualization.plugins.config_parser INFO 2024-02-23 12:54:50,812 [pN:main,p:69576,tN:MainThread] Visualizations plugin disabled: Circster. Skipping... +galaxy.visualization.plugins.config_parser INFO 2024-02-23 12:54:50,813 [pN:main,p:69576,tN:MainThread] template syntax is deprecated: use entry_point instead +galaxy.visualization.plugins.registry INFO 2024-02-23 12:54:50,813 [pN:main,p:69576,tN:MainThread] VisualizationsRegistry, loaded plugin: csg +galaxy.visualization.plugins.registry INFO 2024-02-23 12:54:50,814 [pN:main,p:69576,tN:MainThread] VisualizationsRegistry, loaded plugin: cytoscape +galaxy.visualization.plugins.registry INFO 2024-02-23 12:54:50,815 [pN:main,p:69576,tN:MainThread] VisualizationsRegistry, loaded plugin: drawrna +galaxy.visualization.plugins.registry INFO 2024-02-23 12:54:50,816 [pN:main,p:69576,tN:MainThread] VisualizationsRegistry, loaded plugin: editor +galaxy.visualization.plugins.registry INFO 2024-02-23 12:54:50,817 [pN:main,p:69576,tN:MainThread] VisualizationsRegistry, loaded plugin: example +galaxy.visualization.plugins.config_parser INFO 2024-02-23 12:54:50,818 [pN:main,p:69576,tN:MainThread] template syntax is deprecated: use entry_point instead +galaxy.visualization.plugins.registry INFO 2024-02-23 12:54:50,818 [pN:main,p:69576,tN:MainThread] VisualizationsRegistry, loaded plugin: fits_image_viewer +galaxy.visualization.plugins.config_parser INFO 2024-02-23 12:54:50,819 [pN:main,p:69576,tN:MainThread] template syntax is deprecated: use entry_point instead +galaxy.visualization.plugins.registry INFO 2024-02-23 12:54:50,819 [pN:main,p:69576,tN:MainThread] VisualizationsRegistry, loaded plugin: graphviz +galaxy.visualization.plugins.registry INFO 2024-02-23 12:54:50,820 [pN:main,p:69576,tN:MainThread] VisualizationsRegistry, loaded plugin: h5web +galaxy.visualization.plugins.registry INFO 2024-02-23 12:54:50,822 [pN:main,p:69576,tN:MainThread] VisualizationsRegistry, loaded plugin: heatmap_cluster +galaxy.visualization.plugins.registry INFO 2024-02-23 12:54:50,824 [pN:main,p:69576,tN:MainThread] VisualizationsRegistry, loaded plugin: heatmap_default +galaxy.visualization.plugins.config_parser INFO 2024-02-23 12:54:50,825 [pN:main,p:69576,tN:MainThread] template syntax is deprecated: use entry_point instead +galaxy.visualization.plugins.registry INFO 2024-02-23 12:54:50,825 [pN:main,p:69576,tN:MainThread] VisualizationsRegistry, loaded plugin: hivtrace +galaxy.visualization.plugins.config_parser INFO 2024-02-23 12:54:50,825 [pN:main,p:69576,tN:MainThread] template syntax is deprecated: use entry_point instead +galaxy.visualization.plugins.registry INFO 2024-02-23 12:54:50,825 [pN:main,p:69576,tN:MainThread] VisualizationsRegistry, loaded plugin: hyphyvision +galaxy.visualization.plugins.registry INFO 2024-02-23 12:54:50,828 [pN:main,p:69576,tN:MainThread] VisualizationsRegistry, loaded plugin: jqplot_bar +galaxy.visualization.plugins.registry INFO 2024-02-23 12:54:50,830 [pN:main,p:69576,tN:MainThread] VisualizationsRegistry, loaded plugin: jqplot_box +galaxy.visualization.plugins.registry INFO 2024-02-23 12:54:50,832 [pN:main,p:69576,tN:MainThread] VisualizationsRegistry, loaded plugin: jqplot_histogram +galaxy.visualization.plugins.registry INFO 2024-02-23 12:54:50,834 [pN:main,p:69576,tN:MainThread] VisualizationsRegistry, loaded plugin: jqplot_line +galaxy.visualization.plugins.registry INFO 2024-02-23 12:54:50,836 [pN:main,p:69576,tN:MainThread] VisualizationsRegistry, loaded plugin: jqplot_scatter +galaxy.visualization.plugins.config_parser INFO 2024-02-23 12:54:50,836 [pN:main,p:69576,tN:MainThread] template syntax is deprecated: use entry_point instead +galaxy.visualization.plugins.registry INFO 2024-02-23 12:54:50,837 [pN:main,p:69576,tN:MainThread] VisualizationsRegistry, loaded plugin: audio_player +galaxy.visualization.plugins.config_parser INFO 2024-02-23 12:54:50,837 [pN:main,p:69576,tN:MainThread] template syntax is deprecated: use entry_point instead +galaxy.visualization.plugins.registry INFO 2024-02-23 12:54:50,837 [pN:main,p:69576,tN:MainThread] VisualizationsRegistry, loaded plugin: video_player +galaxy.visualization.plugins.registry INFO 2024-02-23 12:54:50,838 [pN:main,p:69576,tN:MainThread] VisualizationsRegistry, loaded plugin: msa +galaxy.visualization.plugins.config_parser INFO 2024-02-23 12:54:50,839 [pN:main,p:69576,tN:MainThread] template syntax is deprecated: use entry_point instead +galaxy.visualization.plugins.registry INFO 2024-02-23 12:54:50,839 [pN:main,p:69576,tN:MainThread] VisualizationsRegistry, loaded plugin: mvpapp +galaxy.visualization.plugins.registry INFO 2024-02-23 12:54:50,840 [pN:main,p:69576,tN:MainThread] VisualizationsRegistry, loaded plugin: ngl +galaxy.visualization.plugins.registry INFO 2024-02-23 12:54:50,841 [pN:main,p:69576,tN:MainThread] VisualizationsRegistry, loaded plugin: nora +galaxy.visualization.plugins.registry INFO 2024-02-23 12:54:50,844 [pN:main,p:69576,tN:MainThread] VisualizationsRegistry, loaded plugin: nvd3_bar +galaxy.visualization.plugins.registry INFO 2024-02-23 12:54:50,846 [pN:main,p:69576,tN:MainThread] VisualizationsRegistry, loaded plugin: nvd3_bar_stacked +galaxy.visualization.plugins.registry INFO 2024-02-23 12:54:50,848 [pN:main,p:69576,tN:MainThread] VisualizationsRegistry, loaded plugin: nvd3_histogram +galaxy.visualization.plugins.registry INFO 2024-02-23 12:54:50,850 [pN:main,p:69576,tN:MainThread] VisualizationsRegistry, loaded plugin: nvd3_histogram_discrete +galaxy.visualization.plugins.registry INFO 2024-02-23 12:54:50,852 [pN:main,p:69576,tN:MainThread] VisualizationsRegistry, loaded plugin: nvd3_horizontal +galaxy.visualization.plugins.registry INFO 2024-02-23 12:54:50,854 [pN:main,p:69576,tN:MainThread] VisualizationsRegistry, loaded plugin: nvd3_horizontal_stacked +galaxy.visualization.plugins.registry INFO 2024-02-23 12:54:50,856 [pN:main,p:69576,tN:MainThread] VisualizationsRegistry, loaded plugin: nvd3_line +galaxy.visualization.plugins.registry INFO 2024-02-23 12:54:50,858 [pN:main,p:69576,tN:MainThread] VisualizationsRegistry, loaded plugin: nvd3_line_focus +galaxy.visualization.plugins.registry INFO 2024-02-23 12:54:50,859 [pN:main,p:69576,tN:MainThread] VisualizationsRegistry, loaded plugin: nvd3_pie +galaxy.visualization.plugins.registry INFO 2024-02-23 12:54:50,861 [pN:main,p:69576,tN:MainThread] VisualizationsRegistry, loaded plugin: nvd3_scatter +galaxy.visualization.plugins.registry INFO 2024-02-23 12:54:50,863 [pN:main,p:69576,tN:MainThread] VisualizationsRegistry, loaded plugin: nvd3_stackedarea +galaxy.visualization.plugins.registry INFO 2024-02-23 12:54:50,866 [pN:main,p:69576,tN:MainThread] VisualizationsRegistry, loaded plugin: nvd3_stackedarea_full +galaxy.visualization.plugins.registry INFO 2024-02-23 12:54:50,868 [pN:main,p:69576,tN:MainThread] VisualizationsRegistry, loaded plugin: nvd3_stackedarea_stream +galaxy.visualization.plugins.registry INFO 2024-02-23 12:54:50,868 [pN:main,p:69576,tN:MainThread] VisualizationsRegistry, loaded plugin: openlayers +galaxy.visualization.plugins.registry INFO 2024-02-23 12:54:50,870 [pN:main,p:69576,tN:MainThread] VisualizationsRegistry, loaded plugin: openseadragon +galaxy.visualization.plugins.registry INFO 2024-02-23 12:54:50,870 [pN:main,p:69576,tN:MainThread] VisualizationsRegistry, loaded plugin: phylocanvas +galaxy.visualization.plugins.registry INFO 2024-02-23 12:54:50,872 [pN:main,p:69576,tN:MainThread] VisualizationsRegistry, loaded plugin: phyloviz +galaxy.visualization.plugins.registry INFO 2024-02-23 12:54:50,872 [pN:main,p:69576,tN:MainThread] VisualizationsRegistry, loaded plugin: pv +galaxy.visualization.plugins.registry INFO 2024-02-23 12:54:50,874 [pN:main,p:69576,tN:MainThread] VisualizationsRegistry, loaded plugin: scatterplot +galaxy.visualization.plugins.config_parser INFO 2024-02-23 12:54:50,874 [pN:main,p:69576,tN:MainThread] Visualizations plugin disabled: Sweepster. Skipping... +galaxy.visualization.plugins.registry INFO 2024-02-23 12:54:50,874 [pN:main,p:69576,tN:MainThread] VisualizationsRegistry, loaded plugin: trackster +galaxy.visualization.plugins.registry INFO 2024-02-23 12:54:50,875 [pN:main,p:69576,tN:MainThread] VisualizationsRegistry, loaded plugin: ts_visjs +galaxy.visualization.plugins.config_parser INFO 2024-02-23 12:54:50,875 [pN:main,p:69576,tN:MainThread] template syntax is deprecated: use entry_point instead +galaxy.visualization.plugins.registry INFO 2024-02-23 12:54:50,876 [pN:main,p:69576,tN:MainThread] VisualizationsRegistry, loaded plugin: unipept +galaxy.visualization.plugins.registry INFO 2024-02-23 12:54:50,876 [pN:main,p:69576,tN:MainThread] VisualizationsRegistry, loaded plugin: venn +galaxy.tours._impl INFO 2024-02-23 12:54:50,900 [pN:main,p:69576,tN:MainThread] Loaded tour 'core.galaxy_ui' +galaxy.tours._impl INFO 2024-02-23 12:54:50,918 [pN:main,p:69576,tN:MainThread] Loaded tour 'core.deferred' +galaxy.tours._impl INFO 2024-02-23 12:54:50,931 [pN:main,p:69576,tN:MainThread] Loaded tour 'core.history' +galaxy.tours._impl INFO 2024-02-23 12:54:50,941 [pN:main,p:69576,tN:MainThread] Loaded tour 'core.windows' +galaxy.workflow.scheduling_manager INFO 2024-02-23 12:54:50,947 [pN:main,p:69576,tN:MainThread] No workflow schedulers plugin config file defined, using default scheduler. +galaxy.web_stack.handlers INFO 2024-02-23 12:54:50,948 [pN:main,p:69576,tN:MainThread] WorkflowSchedulingManager: No job handler assignment method is set, defaulting to 'HANDLER_ASSIGNMENT_METHODS.DB_SKIP_LOCKED', set the `assign_with` attribute on <handlers> to override the default +galaxy.workflow.scheduling_manager DEBUG 2024-02-23 12:54:50,948 [pN:main,p:69576,tN:MainThread] Starting workflow schedulers +galaxy.app INFO 2024-02-23 12:54:50,950 [pN:main,p:69576,tN:MainThread] Galaxy app startup finished (2615.758 ms) +galaxy.web.framework.base DEBUG 2024-02-23 12:54:50,977 [pN:main,p:69576,tN:MainThread] Enabling 'user' controller, class: User +galaxy.web.framework.base DEBUG 2024-02-23 12:54:50,978 [pN:main,p:69576,tN:MainThread] Enabling 'data_manager' controller, class: DataManager +galaxy.web.framework.base DEBUG 2024-02-23 12:54:50,978 [pN:main,p:69576,tN:MainThread] Enabling 'async' controller, class: ASync +galaxy.web.framework.base DEBUG 2024-02-23 12:54:50,979 [pN:main,p:69576,tN:MainThread] Enabling 'tag' controller, class: TagsController +galaxy.web.framework.base DEBUG 2024-02-23 12:54:50,984 [pN:main,p:69576,tN:MainThread] Enabling 'page' controller, class: PageController +galaxy.web.framework.base DEBUG 2024-02-23 12:54:50,985 [pN:main,p:69576,tN:MainThread] Enabling 'root' controller, class: RootController +galaxy.web.framework.base DEBUG 2024-02-23 12:54:50,985 [pN:main,p:69576,tN:MainThread] Enabling 'tool_runner' controller, class: ToolRunner +galaxy.web.framework.base DEBUG 2024-02-23 12:54:50,986 [pN:main,p:69576,tN:MainThread] Enabling 'error' controller, class: Error +galaxy.web.framework.base DEBUG 2024-02-23 12:54:50,986 [pN:main,p:69576,tN:MainThread] Enabling 'forms' controller, class: Forms +galaxy.web.framework.base DEBUG 2024-02-23 12:54:51,001 [pN:main,p:69576,tN:MainThread] Enabling 'admin_toolshed' controller, class: AdminGalaxy +galaxy.web.framework.base DEBUG 2024-02-23 12:54:51,001 [pN:main,p:69576,tN:MainThread] Enabling 'admin_toolshed' controller, class: AdminToolshed +galaxy.web.framework.base DEBUG 2024-02-23 12:54:51,003 [pN:main,p:69576,tN:MainThread] Enabling 'visualization' controller, class: VisualizationController +galaxy.web.framework.base DEBUG 2024-02-23 12:54:51,003 [pN:main,p:69576,tN:MainThread] Enabling 'shed_tool_static' controller, class: ShedToolStatic +galaxy.web.framework.base DEBUG 2024-02-23 12:54:51,004 [pN:main,p:69576,tN:MainThread] Enabling 'authnz' controller, class: JSAppLauncher +galaxy.web.framework.base DEBUG 2024-02-23 12:54:51,004 [pN:main,p:69576,tN:MainThread] Enabling 'authnz' controller, class: OIDC +galaxy.web.framework.base DEBUG 2024-02-23 12:54:51,006 [pN:main,p:69576,tN:MainThread] Enabling 'workflow' controller, class: WorkflowController +galaxy.web.framework.base DEBUG 2024-02-23 12:54:51,007 [pN:main,p:69576,tN:MainThread] Enabling 'history' controller, class: HistoryController +galaxy.web.framework.base DEBUG 2024-02-23 12:54:51,036 [pN:main,p:69576,tN:MainThread] Enabling 'dataset' controller, class: DatasetInterface +galaxy.web.framework.base DEBUG 2024-02-23 12:54:51,037 [pN:main,p:69576,tN:MainThread] Enabling 'admin' controller, class: AdminGalaxy +galaxy.web.framework.base DEBUG 2024-02-23 12:54:51,747 [pN:main,p:69576,tN:MainThread] Enabling 'library_datasets' API controller, class: LibraryDatasetsController +galaxy.web.framework.base DEBUG 2024-02-23 12:54:51,899 [pN:main,p:69576,tN:MainThread] Enabling 'jobs' API controller, class: JobController +galaxy.web.framework.base DEBUG 2024-02-23 12:54:52,019 [pN:main,p:69576,tN:MainThread] Enabling 'job_files' API controller, class: JobFilesAPIController +galaxy.web.framework.base DEBUG 2024-02-23 12:54:52,066 [pN:main,p:69576,tN:MainThread] Enabling 'toolshed' API controller, class: ToolShedController +galaxy.web.framework.base DEBUG 2024-02-23 12:54:52,082 [pN:main,p:69576,tN:MainThread] Enabling 'tools' API controller, class: ToolsController +galaxy.web.framework.base DEBUG 2024-02-23 12:54:52,203 [pN:main,p:69576,tN:MainThread] Enabling 'trs_consumer' API controller, class: TrsConsumeAPIController +galaxy.web.framework.base DEBUG 2024-02-23 12:54:52,204 [pN:main,p:69576,tN:MainThread] Enabling 'history_dataset_extended_metadata' API controller, class: HistoryDatasetExtendMetadataController +galaxy.web.framework.base DEBUG 2024-02-23 12:54:52,204 [pN:main,p:69576,tN:MainThread] Enabling 'library_dataset_extended_metadata' API controller, class: LibraryDatasetExtendMetadataController +galaxy.web.framework.base DEBUG 2024-02-23 12:54:52,205 [pN:main,p:69576,tN:MainThread] Enabling 'container_resolution' API controller, class: ContainerResolutionAPIController +galaxy.web.framework.base DEBUG 2024-02-23 12:54:52,206 [pN:main,p:69576,tN:MainThread] Enabling 'job_ports' API controller, class: JobPortsAPIController +galaxy.web.framework.base DEBUG 2024-02-23 12:54:52,206 [pN:main,p:69576,tN:MainThread] Enabling 'tool_dependencies' API controller, class: ToolDependenciesAPIController +galaxy.web.framework.base DEBUG 2024-02-23 12:54:52,346 [pN:main,p:69576,tN:MainThread] Enabling 'history_content_provenance' API controller, class: HDAProvenanceController +galaxy.web.framework.base DEBUG 2024-02-23 12:54:52,346 [pN:main,p:69576,tN:MainThread] Enabling 'ldda_provenance' API controller, class: LDDAProvenanceController +galaxy.web.framework.base DEBUG 2024-02-23 12:54:52,347 [pN:main,p:69576,tN:MainThread] Enabling 'tool_entry_points' API controller, class: ToolEntryPointsAPIController +galaxy.web.framework.base DEBUG 2024-02-23 12:54:52,480 [pN:main,p:69576,tN:MainThread] Enabling 'authenticate' API controller, class: AuthenticationController +galaxy.web.framework.base DEBUG 2024-02-23 12:54:52,903 [pN:main,p:69576,tN:MainThread] Enabling 'trs_search' API controller, class: TrsSearchAPIController +galaxy.web.framework.base DEBUG 2024-02-23 12:54:52,956 [pN:main,p:69576,tN:MainThread] Enabling 'tool_shed_repositories' API controller, class: ToolShedRepositoriesController +galaxy.web.framework.base DEBUG 2024-02-23 12:54:53,142 [pN:main,p:69576,tN:MainThread] Enabling 'forms' API controller, class: FormDefinitionAPIController +galaxy.web.framework.base DEBUG 2024-02-23 12:54:53,418 [pN:main,p:69576,tN:MainThread] Enabling 'workflows' API controller, class: WorkflowsAPIController +galaxy.web.framework.base DEBUG 2024-02-23 12:54:53,418 [pN:main,p:69576,tN:MainThread] Enabling 'uploads' API controller, class: UploadsAPIController +galaxy.web.framework.base DEBUG 2024-02-23 12:54:54,210 [pN:main,p:69576,tN:MainThread] Enabling 'history_annotations' API controller, class: HistoryAnnotationsController +galaxy.web.framework.base DEBUG 2024-02-23 12:54:54,210 [pN:main,p:69576,tN:MainThread] Enabling 'history_content_annotations' API controller, class: HistoryContentAnnotationsController +galaxy.web.framework.base DEBUG 2024-02-23 12:54:54,210 [pN:main,p:69576,tN:MainThread] Enabling 'workflow_annotations' API controller, class: WorkflowAnnotationsController +galaxy.web.framework.base DEBUG 2024-02-23 12:54:54,283 [pN:main,p:69576,tN:MainThread] Enabling 'visualizations' API controller, class: VisualizationsController +galaxy.web.framework.base DEBUG 2024-02-23 12:54:54,283 [pN:main,p:69576,tN:MainThread] Enabling 'sanitize_allow' API controller, class: SanitizeAllowController +galaxy.web.framework.base DEBUG 2024-02-23 12:54:54,284 [pN:main,p:69576,tN:MainThread] Enabling 'page_revisions' API controller, class: PageRevisionsController +galaxy.web.framework.base DEBUG 2024-02-23 12:54:54,395 [pN:main,p:69576,tN:MainThread] Enabling 'library_contents' API controller, class: LibraryContentsController +galaxy.web.framework.base DEBUG 2024-02-23 12:54:54,583 [pN:main,p:69576,tN:MainThread] Enabling 'users' API controller, class: UserAPIController +galaxy.web.framework.base DEBUG 2024-02-23 12:54:54,584 [pN:main,p:69576,tN:MainThread] Enabling 'cloudauthz' API controller, class: CloudAuthzController +galaxy.web.framework.base DEBUG 2024-02-23 12:54:54,585 [pN:main,p:69576,tN:MainThread] Enabling 'webhooks' API controller, class: WebhooksController +galaxy.web.framework.base DEBUG 2024-02-23 12:54:54,679 [pN:main,p:69576,tN:MainThread] Enabling 'plugins' API controller, class: PluginsController +galaxy.web.framework.base DEBUG 2024-02-23 12:54:54,716 [pN:main,p:69576,tN:MainThread] Enabling 'dynamic_tools' API controller, class: DynamicToolsController +galaxy.webapps.util DEBUG 2024-02-23 12:54:54,997 [pN:main,p:69576,tN:MainThread] Enabling 'paste.httpexceptions' middleware +galaxy.webapps.util DEBUG 2024-02-23 12:54:54,997 [pN:main,p:69576,tN:MainThread] Enabling 'RemoteUser' middleware +galaxy.webapps.util DEBUG 2024-02-23 12:54:54,998 [pN:main,p:69576,tN:MainThread] Enabling 'ErrorMiddleware' middleware +galaxy.webapps.util DEBUG 2024-02-23 12:54:54,998 [pN:main,p:69576,tN:MainThread] Enabling 'TusMiddleware' middleware +galaxy.webapps.util DEBUG 2024-02-23 12:54:54,998 [pN:main,p:69576,tN:MainThread] Enabling 'XForwardedHostMiddleware' middleware +galaxy.webapps.util DEBUG 2024-02-23 12:54:54,998 [pN:main,p:69576,tN:MainThread] Enabling 'RequestIDMiddleware' middleware +galaxy.webapps.util DEBUG 2024-02-23 12:54:54,998 [pN:main,p:69576,tN:MainThread] Enabling 'build_url_map' middleware +galaxy.webapps.galaxy.buildapp DEBUG 2024-02-23 12:54:54,998 [pN:main,p:69576,tN:MainThread] Prior to webapp return, Galaxy thread <_MainThread(MainThread, started 140550329923392)> is alive. +galaxy.web_stack DEBUG 2024-02-23 12:54:56,597 [pN:main.1,p:69789,tN:Thread-2] server_name set to: main.1 +galaxy.jobs.manager DEBUG 2024-02-23 12:54:56,598 [pN:main.1,p:69789,tN:Thread-2] Initializing job handler +galaxy.jobs INFO 2024-02-23 12:54:56,599 [pN:main.1,p:69789,tN:Thread-2] Handler 'main.1' will load all configured runner plugins +galaxy.jobs.runners.state_handler_factory DEBUG 2024-02-23 12:54:56,615 [pN:main.1,p:69789,tN:Thread-2] Loaded 'failure' state handler from module galaxy.jobs.runners.state_handlers.resubmit +galaxy.jobs DEBUG 2024-02-23 12:54:56,616 [pN:main.1,p:69789,tN:Thread-2] Loaded job runner 'galaxy.jobs.runners.local:LocalJobRunner' as 'local' +galaxy.jobs.handler DEBUG 2024-02-23 12:54:56,616 [pN:main.1,p:69789,tN:Thread-2] Loaded job runners plugins: local +galaxy.jobs.runners DEBUG 2024-02-23 12:54:56,617 [pN:main.1,p:69789,tN:Thread-2] Starting 4 LocalRunner workers +galaxy.jobs.handler DEBUG 2024-02-23 12:54:56,630 [pN:main.1,p:69789,tN:Thread-2] Handler queue starting for jobs assigned to handler: main.1 +galaxy.jobs.handler INFO 2024-02-23 12:54:56,664 [pN:main.1,p:69789,tN:JobHandlerQueue.monitor_thread] Handler job grabber initialized with 'HANDLER_ASSIGNMENT_METHODS.DB_SKIP_LOCKED' assignment method for handler 'main.1', tag(s): +galaxy.jobs.handler INFO 2024-02-23 12:54:56,665 [pN:main.1,p:69789,tN:Thread-2] job handler queue started +galaxy.jobs.handler INFO 2024-02-23 12:54:56,671 [pN:main.1,p:69789,tN:Thread-2] job handler stop queue started +galaxy.jobs.handler INFO 2024-02-23 12:54:56,674 [pN:main.1,p:69789,tN:WorkflowRequestMonitor.monitor_thread] Handler job grabber initialized with 'HANDLER_ASSIGNMENT_METHODS.DB_SKIP_LOCKED' assignment method for handler 'main.1', tag(s): None, _default_ +galaxy.queue_worker INFO 2024-02-23 12:54:56,680 [pN:main.1,p:69789,tN:Thread-2] Binding and starting galaxy control worker for main.1 +galaxy.queue_worker DEBUG 2024-02-23 12:54:56,689 [pN:main.1,p:69789,tN:Thread-2] Executing toolbox reload on 'main.1' +galaxy.util WARNING 2024-02-23 12:54:56,728 [pN:main.1,p:69789,tN:Thread-2] directory not found: /scratch/rico/galaxy/lib/galaxy/util/../../../config/plugins/activities +galaxy.tools WARNING 2024-02-23 12:54:56,730 [pN:main.1,p:69789,tN:Thread-2] The default shed tool config file (/tmp/tmpijf8h9m9/shed_tool_conf.xml) has been added to the tool_config_file option, if this is not the desired behavior, please set shed_tool_config_file to your primary shed-enabled tool config file +galaxy.tool_util.toolbox.base INFO 2024-02-23 12:54:56,730 [pN:main.1,p:69789,tN:Thread-2] Parsing the tool configuration /tmp/tmpijf8h9m9/tool_conf.xml +galaxy.tool_util.toolbox.base DEBUG 2024-02-23 12:54:56,731 [pN:main.1,p:69789,tN:Thread-2] Tool path for tool configuration /tmp/tmpijf8h9m9/tool_conf.xml is None +galaxy.tools WARNING 2024-02-23 12:54:56,731 [pN:main.1,p:69789,tN:Thread-2] The default shed tool config file (/tmp/tmpijf8h9m9/shed_tool_conf.xml) has been added to the tool_config_file option, if this is not the desired behavior, please set shed_tool_config_file to your primary shed-enabled tool config file +galaxy.tool_util.toolbox.base INFO 2024-02-23 12:54:56,731 [pN:main.1,p:69789,tN:Thread-2] Parsing the tool configuration /tmp/tmpijf8h9m9/shed_tools_conf.xml +galaxy.tool_util.toolbox.base DEBUG 2024-02-23 12:54:56,731 [pN:main.1,p:69789,tN:Thread-2] Tool path for shed tool configuration /tmp/tmpijf8h9m9/shed_tools_conf.xml is /tmp/tmpijf8h9m9/shed_tools +galaxy.tools WARNING 2024-02-23 12:54:56,732 [pN:main.1,p:69789,tN:Thread-2] The default shed tool config file (/tmp/tmpijf8h9m9/shed_tool_conf.xml) has been added to the tool_config_file option, if this is not the desired behavior, please set shed_tool_config_file to your primary shed-enabled tool config file +galaxy.tool_util.toolbox.base INFO 2024-02-23 12:54:56,732 [pN:main.1,p:69789,tN:Thread-2] Parsing the tool configuration /tmp/tmpijf8h9m9/empty_tool_conf.xml +galaxy.tool_util.toolbox.base DEBUG 2024-02-23 12:54:56,732 [pN:main.1,p:69789,tN:Thread-2] Tool path for tool configuration /tmp/tmpijf8h9m9/empty_tool_conf.xml is None +galaxy.tool_util.toolbox.base DEBUG 2024-02-23 12:54:56,732 [pN:main.1,p:69789,tN:Thread-2] Reading tools from config files finished (2.314 ms) +galaxy.tool_util.toolbox.base DEBUG 2024-02-23 12:54:56,732 [pN:main.1,p:69789,tN:Thread-2] Loaded tool id: upload1, version: 1.1.7 into tool panel.. +galaxy.tool_util.toolbox.base DEBUG 2024-02-23 12:54:56,738 [pN:main.1,p:69789,tN:Thread-2] Loading tool panel finished (8.862 ms) +galaxy.tool_util.toolbox.base DEBUG 2024-02-23 12:54:56,746 [pN:main.1,p:69789,tN:Thread-2] Loaded tool id: upload1, version: 1.1.7 into tool panel.. +galaxy.tool_util.toolbox.views.edam DEBUG 2024-02-23 12:54:56,748 [pN:main.1,p:69789,tN:Thread-2] Loading EDAM tool panel finished (5.709 ms) +galaxy.tool_util.toolbox.base DEBUG 2024-02-23 12:54:56,750 [pN:main.1,p:69789,tN:Thread-2] Loaded tool id: upload1, version: 1.1.7 into tool panel.. +galaxy.tool_util.toolbox.views.edam DEBUG 2024-02-23 12:54:56,751 [pN:main.1,p:69789,tN:Thread-2] Loading EDAM tool panel finished (2.064 ms) +galaxy.datatypes.registry DEBUG 2024-02-23 12:54:56,751 [pN:main.1,p:69789,tN:Thread-2] Loaded converter: CONVERTER_uncompressed_to_gz +galaxy.datatypes.registry DEBUG 2024-02-23 12:54:56,751 [pN:main.1,p:69789,tN:Thread-2] Loaded converter: CONVERTER_gz_to_uncompressed +galaxy.datatypes.registry DEBUG 2024-02-23 12:54:56,752 [pN:main.1,p:69789,tN:Thread-2] Loaded converter: CONVERTER_uncompressed_to_gz +galaxy.datatypes.registry DEBUG 2024-02-23 12:54:56,753 [pN:main.1,p:69789,tN:Thread-2] Loaded converter: CONVERTER_gz_to_uncompressed +galaxy.datatypes.registry DEBUG 2024-02-23 12:54:56,753 [pN:main.1,p:69789,tN:Thread-2] Loaded converter: CONVERTER_uncompressed_to_gz +galaxy.datatypes.registry DEBUG 2024-02-23 12:54:56,754 [pN:main.1,p:69789,tN:Thread-2] Loaded converter: CONVERTER_gz_to_uncompressed +galaxy.datatypes.registry DEBUG 2024-02-23 12:54:56,754 [pN:main.1,p:69789,tN:Thread-2] Loaded converter: CONVERTER_Bam_Bai_0 +galaxy.datatypes.registry DEBUG 2024-02-23 12:54:56,755 [pN:main.1,p:69789,tN:Thread-2] Loaded converter: CONVERTER_bam_to_bigwig_0 +galaxy.datatypes.registry DEBUG 2024-02-23 12:54:56,755 [pN:main.1,p:69789,tN:Thread-2] Loaded converter: CONVERTER_bam_to_qname_sorted_bam +galaxy.datatypes.registry DEBUG 2024-02-23 12:54:56,755 [pN:main.1,p:69789,tN:Thread-2] Loaded converter: CONVERTER_bam_to_bigwig_0 +galaxy.datatypes.registry DEBUG 2024-02-23 12:54:56,756 [pN:main.1,p:69789,tN:Thread-2] Loaded converter: CONVERTER_bam_to_coodinate_sorted_bam +galaxy.datatypes.registry DEBUG 2024-02-23 12:54:56,756 [pN:main.1,p:69789,tN:Thread-2] Loaded converter: CONVERTER_bam_to_qname_sorted_bam +galaxy.datatypes.registry DEBUG 2024-02-23 12:54:56,757 [pN:main.1,p:69789,tN:Thread-2] Loaded converter: CONVERTER_cram_to_bam_0 +galaxy.datatypes.registry DEBUG 2024-02-23 12:54:56,757 [pN:main.1,p:69789,tN:Thread-2] Loaded converter: CONVERTER_bed_to_gff_0 +galaxy.datatypes.registry DEBUG 2024-02-23 12:54:56,757 [pN:main.1,p:69789,tN:Thread-2] Loaded converter: CONVERTER_interval_to_bgzip_0 +galaxy.datatypes.registry DEBUG 2024-02-23 12:54:56,757 [pN:main.1,p:69789,tN:Thread-2] Loaded converter: CONVERTER_interval_to_tabix_0 +galaxy.model.database_heartbeat DEBUG 2024-02-23 12:54:56,758 [pN:main.1,p:69789,tN:database_heartbeart_main.1.thread] main.1 is config watcher +galaxy.datatypes.registry DEBUG 2024-02-23 12:54:56,763 [pN:main.1,p:69789,tN:Thread-2] Loaded converter: CONVERTER_bed_gff_or_vcf_to_bigwig_0 +galaxy.datatypes.registry DEBUG 2024-02-23 12:54:56,771 [pN:main.1,p:69789,tN:Thread-2] Loaded converter: CONVERTER_bed_to_fli_0 +galaxy.datatypes.registry DEBUG 2024-02-23 12:54:56,771 [pN:main.1,p:69789,tN:Thread-2] Loaded converter: CONVERTER_bedgraph_to_bigwig +galaxy.datatypes.registry DEBUG 2024-02-23 12:54:56,771 [pN:main.1,p:69789,tN:Thread-2] Loaded converter: CONVERTER_len_to_linecount +galaxy.datatypes.registry DEBUG 2024-02-23 12:54:56,771 [pN:main.1,p:69789,tN:Thread-2] Loaded converter: CONVERTER_parquet_to_csv +galaxy.datatypes.registry DEBUG 2024-02-23 12:54:56,774 [pN:main.1,p:69789,tN:Thread-2] Loaded converter: bigwigtowig +galaxy.datatypes.registry DEBUG 2024-02-23 12:54:56,774 [pN:main.1,p:69789,tN:Thread-2] Loaded converter: CONVERTER_interval_to_bgzip_0 +galaxy.datatypes.registry DEBUG 2024-02-23 12:54:56,775 [pN:main.1,p:69789,tN:Thread-2] Loaded converter: CONVERTER_interval_to_tabix_0 +galaxy.datatypes.registry DEBUG 2024-02-23 12:54:56,775 [pN:main.1,p:69789,tN:Thread-2] Loaded converter: CONVERTER_bed_gff_or_vcf_to_bigwig_0 +galaxy.datatypes.registry DEBUG 2024-02-23 12:54:56,775 [pN:main.1,p:69789,tN:Thread-2] Loaded converter: csv_to_tabular +galaxy.datatypes.registry DEBUG 2024-02-23 12:54:56,776 [pN:main.1,p:69789,tN:Thread-2] Loaded converter: tabular_to_csv +galaxy.datatypes.registry DEBUG 2024-02-23 12:54:56,776 [pN:main.1,p:69789,tN:Thread-2] Loaded converter: CONVERTER_fasta_to_tabular +galaxy.datatypes.registry DEBUG 2024-02-23 12:54:56,777 [pN:main.1,p:69789,tN:Thread-2] Loaded converter: CONVERTER_fasta_to_bowtie_base_index +galaxy.datatypes.registry DEBUG 2024-02-23 12:54:56,777 [pN:main.1,p:69789,tN:Thread-2] Loaded converter: CONVERTER_fasta_to_bowtie_color_index +galaxy.datatypes.registry DEBUG 2024-02-23 12:54:56,782 [pN:main.1,p:69789,tN:Thread-2] Loaded converter: CONVERTER_fasta_to_2bit +galaxy.datatypes.registry DEBUG 2024-02-23 12:54:56,783 [pN:main.1,p:69789,tN:Thread-2] Loaded converter: CONVERTER_fasta_to_len +galaxy.datatypes.registry DEBUG 2024-02-23 12:54:56,783 [pN:main.1,p:69789,tN:Thread-2] Loaded converter: CONVERTER_fasta_to_fai +galaxy.datatypes.registry DEBUG 2024-02-23 12:54:56,800 [pN:main.1,p:69789,tN:Thread-2] Loaded converter: CONVERTER_uncompressed_to_gz +galaxy.datatypes.registry DEBUG 2024-02-23 12:54:56,806 [pN:main.1,p:69789,tN:Thread-2] Loaded converter: CONVERTER_gz_to_uncompressed +galaxy.datatypes.registry DEBUG 2024-02-23 12:54:56,806 [pN:main.1,p:69789,tN:Thread-2] Loaded converter: CONVERTER_fastq_to_fqtoc0 +galaxy.datatypes.registry DEBUG 2024-02-23 12:54:56,806 [pN:main.1,p:69789,tN:Thread-2] Loaded converter: CONVERTER_uncompressed_to_gz +galaxy.datatypes.registry DEBUG 2024-02-23 12:54:56,807 [pN:main.1,p:69789,tN:Thread-2] Loaded converter: CONVERTER_gz_to_uncompressed +galaxy.datatypes.registry DEBUG 2024-02-23 12:54:56,807 [pN:main.1,p:69789,tN:Thread-2] Loaded converter: CONVERTER_bz2_to_uncompressed +galaxy.datatypes.registry DEBUG 2024-02-23 12:54:56,807 [pN:main.1,p:69789,tN:Thread-2] Loaded converter: CONVERTER_fastq_to_fqtoc0 +galaxy.datatypes.registry DEBUG 2024-02-23 12:54:56,807 [pN:main.1,p:69789,tN:Thread-2] Loaded converter: CONVERTER_uncompressed_to_gz +galaxy.datatypes.registry DEBUG 2024-02-23 12:54:56,807 [pN:main.1,p:69789,tN:Thread-2] Loaded converter: CONVERTER_gz_to_uncompressed +galaxy.datatypes.registry DEBUG 2024-02-23 12:54:56,808 [pN:main.1,p:69789,tN:Thread-2] Loaded converter: CONVERTER_bz2_to_uncompressed +galaxy.datatypes.registry DEBUG 2024-02-23 12:54:56,808 [pN:main.1,p:69789,tN:Thread-2] Loaded converter: CONVERTER_fastq_to_fqtoc0 +galaxy.datatypes.registry DEBUG 2024-02-23 12:54:56,808 [pN:main.1,p:69789,tN:Thread-2] Loaded converter: CONVERTER_uncompressed_to_gz +galaxy.datatypes.registry DEBUG 2024-02-23 12:54:56,809 [pN:main.1,p:69789,tN:Thread-2] Loaded converter: CONVERTER_gz_to_uncompressed +galaxy.datatypes.registry DEBUG 2024-02-23 12:54:56,809 [pN:main.1,p:69789,tN:Thread-2] Loaded converter: CONVERTER_bz2_to_uncompressed +galaxy.datatypes.registry DEBUG 2024-02-23 12:54:56,809 [pN:main.1,p:69789,tN:Thread-2] Loaded converter: CONVERTER_fastq_to_fqtoc0 +galaxy.datatypes.registry DEBUG 2024-02-23 12:54:56,809 [pN:main.1,p:69789,tN:Thread-2] Loaded converter: CONVERTER_uncompressed_to_gz +galaxy.datatypes.registry DEBUG 2024-02-23 12:54:56,810 [pN:main.1,p:69789,tN:Thread-2] Loaded converter: CONVERTER_gz_to_uncompressed +galaxy.datatypes.registry DEBUG 2024-02-23 12:54:56,810 [pN:main.1,p:69789,tN:Thread-2] Loaded converter: CONVERTER_bz2_to_uncompressed +galaxy.datatypes.registry DEBUG 2024-02-23 12:54:56,810 [pN:main.1,p:69789,tN:Thread-2] Loaded converter: CONVERTER_fastq_to_fqtoc0 +galaxy.datatypes.registry DEBUG 2024-02-23 12:54:56,810 [pN:main.1,p:69789,tN:Thread-2] Loaded converter: CONVERTER_uncompressed_to_gz +galaxy.datatypes.registry DEBUG 2024-02-23 12:54:56,811 [pN:main.1,p:69789,tN:Thread-2] Loaded converter: CONVERTER_gz_to_uncompressed +galaxy.datatypes.registry DEBUG 2024-02-23 12:54:56,811 [pN:main.1,p:69789,tN:Thread-2] Loaded converter: CONVERTER_bz2_to_uncompressed +galaxy.datatypes.registry DEBUG 2024-02-23 12:54:56,811 [pN:main.1,p:69789,tN:Thread-2] Loaded converter: CONVERTER_gff_to_bed_0 +galaxy.datatypes.registry DEBUG 2024-02-23 12:54:56,812 [pN:main.1,p:69789,tN:Thread-2] Loaded converter: CONVERTER_gff_to_interval_index_0 +galaxy.datatypes.registry DEBUG 2024-02-23 12:54:56,812 [pN:main.1,p:69789,tN:Thread-2] Loaded converter: CONVERTER_bed_gff_or_vcf_to_bigwig_0 +galaxy.datatypes.registry DEBUG 2024-02-23 12:54:56,814 [pN:main.1,p:69789,tN:Thread-2] Loaded converter: CONVERTER_gff_to_fli_0 +galaxy.datatypes.registry DEBUG 2024-02-23 12:54:56,814 [pN:main.1,p:69789,tN:Thread-2] Loaded converter: CONVERTER_interval_to_bgzip_0 +galaxy.datatypes.registry DEBUG 2024-02-23 12:54:56,814 [pN:main.1,p:69789,tN:Thread-2] Loaded converter: CONVERTER_interval_to_tabix_0 +galaxy.datatypes.registry DEBUG 2024-02-23 12:54:56,815 [pN:main.1,p:69789,tN:Thread-2] Loaded converter: CONVERTER_uncompressed_to_gz +galaxy.datatypes.registry DEBUG 2024-02-23 12:54:56,815 [pN:main.1,p:69789,tN:Thread-2] Loaded converter: CONVERTER_gz_to_uncompressed +galaxy.datatypes.registry DEBUG 2024-02-23 12:54:56,815 [pN:main.1,p:69789,tN:Thread-2] Loaded converter: CONVERTER_bz2_to_uncompressed +galaxy.datatypes.registry DEBUG 2024-02-23 12:54:56,815 [pN:main.1,p:69789,tN:Thread-2] Loaded converter: CONVERTER_gff_to_interval_index_0 +galaxy.datatypes.registry DEBUG 2024-02-23 12:54:56,816 [pN:main.1,p:69789,tN:Thread-2] Loaded converter: CONVERTER_bed_gff_or_vcf_to_bigwig_0 +galaxy.datatypes.registry DEBUG 2024-02-23 12:54:56,816 [pN:main.1,p:69789,tN:Thread-2] Loaded converter: CONVERTER_interval_to_bed_0 +galaxy.datatypes.registry DEBUG 2024-02-23 12:54:56,816 [pN:main.1,p:69789,tN:Thread-2] Loaded converter: CONVERTER_interval_to_bedstrict_0 +galaxy.datatypes.registry DEBUG 2024-02-23 12:54:56,816 [pN:main.1,p:69789,tN:Thread-2] Loaded converter: CONVERTER_interval_to_bed6_0 +galaxy.datatypes.registry DEBUG 2024-02-23 12:54:56,816 [pN:main.1,p:69789,tN:Thread-2] Loaded converter: CONVERTER_interval_to_bed12_0 +galaxy.datatypes.registry DEBUG 2024-02-23 12:54:56,816 [pN:main.1,p:69789,tN:Thread-2] Loaded converter: CONVERTER_interval_to_bgzip_0 +galaxy.datatypes.registry DEBUG 2024-02-23 12:54:56,817 [pN:main.1,p:69789,tN:Thread-2] Loaded converter: CONVERTER_interval_to_tabix_0 +galaxy.datatypes.registry DEBUG 2024-02-23 12:54:56,817 [pN:main.1,p:69789,tN:Thread-2] Loaded converter: CONVERTER_interval_to_bigwig_0 +galaxy.datatypes.registry DEBUG 2024-02-23 12:54:56,817 [pN:main.1,p:69789,tN:Thread-2] Loaded converter: CONVERTER_picard_interval_list_to_bed6 +galaxy.datatypes.registry DEBUG 2024-02-23 12:54:56,817 [pN:main.1,p:69789,tN:Thread-2] Loaded converter: CONVERTER_tar_to_directory +galaxy.datatypes.registry DEBUG 2024-02-23 12:54:56,817 [pN:main.1,p:69789,tN:Thread-2] Loaded converter: CONVERTER_uncompressed_to_gz +galaxy.datatypes.registry DEBUG 2024-02-23 12:54:56,817 [pN:main.1,p:69789,tN:Thread-2] Loaded converter: CONVERTER_gz_to_uncompressed +galaxy.datatypes.registry DEBUG 2024-02-23 12:54:56,817 [pN:main.1,p:69789,tN:Thread-2] Loaded converter: CONVERTER_uncompressed_to_gz +galaxy.datatypes.registry DEBUG 2024-02-23 12:54:56,817 [pN:main.1,p:69789,tN:Thread-2] Loaded converter: CONVERTER_gz_to_uncompressed +galaxy.datatypes.registry DEBUG 2024-02-23 12:54:56,817 [pN:main.1,p:69789,tN:Thread-2] Loaded converter: CONVERTER_uncompressed_to_gz +galaxy.datatypes.registry DEBUG 2024-02-23 12:54:56,818 [pN:main.1,p:69789,tN:Thread-2] Loaded converter: CONVERTER_gz_to_uncompressed +galaxy.datatypes.registry DEBUG 2024-02-23 12:54:56,818 [pN:main.1,p:69789,tN:Thread-2] Loaded converter: CONVERTER_maf_to_fasta_0 +galaxy.datatypes.registry DEBUG 2024-02-23 12:54:56,818 [pN:main.1,p:69789,tN:Thread-2] Loaded converter: CONVERTER_maf_to_interval_0 +galaxy.datatypes.registry DEBUG 2024-02-23 12:54:56,818 [pN:main.1,p:69789,tN:Thread-2] Loaded converter: CONVERTER_interval_to_tabix_0 +galaxy.datatypes.registry DEBUG 2024-02-23 12:54:56,818 [pN:main.1,p:69789,tN:Thread-2] Loaded converter: CONVERTER_interval_to_bgzip_0 +galaxy.datatypes.registry DEBUG 2024-02-23 12:54:56,818 [pN:main.1,p:69789,tN:Thread-2] Loaded converter: CONVERTER_bed_gff_or_vcf_to_bigwig_0 +galaxy.datatypes.registry DEBUG 2024-02-23 12:54:56,818 [pN:main.1,p:69789,tN:Thread-2] Loaded converter: CONVERTER_interval_to_bgzip_0 +galaxy.datatypes.registry DEBUG 2024-02-23 12:54:56,818 [pN:main.1,p:69789,tN:Thread-2] Loaded converter: CONVERTER_interval_to_tabix_0 +galaxy.datatypes.registry DEBUG 2024-02-23 12:54:56,818 [pN:main.1,p:69789,tN:Thread-2] Loaded converter: CONVERTER_sam_to_unsorted_bam +galaxy.datatypes.registry DEBUG 2024-02-23 12:54:56,818 [pN:main.1,p:69789,tN:Thread-2] Loaded converter: CONVERTER_bam_to_coodinate_sorted_bam +galaxy.datatypes.registry DEBUG 2024-02-23 12:54:56,819 [pN:main.1,p:69789,tN:Thread-2] Loaded converter: CONVERTER_bam_to_qname_sorted_bam +galaxy.datatypes.registry DEBUG 2024-02-23 12:54:56,819 [pN:main.1,p:69789,tN:Thread-2] Loaded converter: CONVERTER_sam_to_bigwig_0 +galaxy.datatypes.registry DEBUG 2024-02-23 12:54:56,819 [pN:main.1,p:69789,tN:Thread-2] Loaded converter: tabular_to_dbnsfp +galaxy.datatypes.registry DEBUG 2024-02-23 12:54:56,819 [pN:main.1,p:69789,tN:Thread-2] Loaded converter: tabular_to_csv +galaxy.datatypes.registry DEBUG 2024-02-23 12:54:56,819 [pN:main.1,p:69789,tN:Thread-2] Loaded converter: CONVERTER_uncompressed_to_gz +galaxy.datatypes.registry DEBUG 2024-02-23 12:54:56,819 [pN:main.1,p:69789,tN:Thread-2] Loaded converter: CONVERTER_gz_to_uncompressed +galaxy.datatypes.registry DEBUG 2024-02-23 12:54:56,819 [pN:main.1,p:69789,tN:Thread-2] Loaded converter: CONVERTER_interval_to_bgzip_0 +galaxy.datatypes.registry DEBUG 2024-02-23 12:54:56,819 [pN:main.1,p:69789,tN:Thread-2] Loaded converter: CONVERTER_vcf_to_vcf_bgzip_0 +galaxy.datatypes.registry DEBUG 2024-02-23 12:54:56,819 [pN:main.1,p:69789,tN:Thread-2] Loaded converter: CONVERTER_interval_to_tabix_0 +galaxy.datatypes.registry DEBUG 2024-02-23 12:54:56,819 [pN:main.1,p:69789,tN:Thread-2] Loaded converter: CONVERTER_bed_gff_or_vcf_to_bigwig_0 +galaxy.datatypes.registry DEBUG 2024-02-23 12:54:56,820 [pN:main.1,p:69789,tN:Thread-2] Loaded converter: CONVERTER_uncompressed_to_gz +galaxy.datatypes.registry DEBUG 2024-02-23 12:54:56,820 [pN:main.1,p:69789,tN:Thread-2] Loaded converter: CONVERTER_bcf_uncompressed_to_bcf +galaxy.datatypes.registry DEBUG 2024-02-23 12:54:56,820 [pN:main.1,p:69789,tN:Thread-2] Loaded converter: CONVERTER_bcf_uncompressed_to_bcf +galaxy.datatypes.registry DEBUG 2024-02-23 12:54:56,820 [pN:main.1,p:69789,tN:Thread-2] Loaded converter: CONVERTER_wig_to_bigwig +galaxy.datatypes.registry DEBUG 2024-02-23 12:54:56,820 [pN:main.1,p:69789,tN:Thread-2] Loaded converter: CONVERTER_wiggle_to_interval_0 +galaxy.datatypes.registry DEBUG 2024-02-23 12:54:56,820 [pN:main.1,p:69789,tN:Thread-2] Loaded converter: CONVERTER_vcf_bgzip_to_tabix_0 +galaxy.datatypes.registry DEBUG 2024-02-23 12:54:56,820 [pN:main.1,p:69789,tN:Thread-2] Loaded converter: CONVERTER_gz_to_uncompressed +galaxy.datatypes.registry DEBUG 2024-02-23 12:54:56,820 [pN:main.1,p:69789,tN:Thread-2] Loaded converter: lped2fpedconvert +galaxy.datatypes.registry DEBUG 2024-02-23 12:54:56,820 [pN:main.1,p:69789,tN:Thread-2] Loaded converter: lped2pbedconvert +galaxy.datatypes.registry DEBUG 2024-02-23 12:54:56,821 [pN:main.1,p:69789,tN:Thread-2] Loaded converter: pbed2lpedconvert +galaxy.datatypes.registry DEBUG 2024-02-23 12:54:56,821 [pN:main.1,p:69789,tN:Thread-2] Loaded converter: pbed2ldindepconvert +galaxy.datatypes.registry DEBUG 2024-02-23 12:54:56,821 [pN:main.1,p:69789,tN:Thread-2] Loaded converter: CONVERTER_uncompressed_to_gz +galaxy.datatypes.registry DEBUG 2024-02-23 12:54:56,821 [pN:main.1,p:69789,tN:Thread-2] Loaded converter: CONVERTER_gz_to_uncompressed +galaxy.datatypes.registry DEBUG 2024-02-23 12:54:56,821 [pN:main.1,p:69789,tN:Thread-2] Loaded converter: CONVERTER_biom +galaxy.datatypes.registry DEBUG 2024-02-23 12:54:56,821 [pN:main.1,p:69789,tN:Thread-2] Loaded converter: CONVERTER_biom +galaxy.datatypes.registry DEBUG 2024-02-23 12:54:56,822 [pN:main.1,p:69789,tN:Thread-2] Loaded converter: CONVERTER_molecules +galaxy.datatypes.registry DEBUG 2024-02-23 12:54:56,822 [pN:main.1,p:69789,tN:Thread-2] Loaded converter: CONVERTER_molecules +galaxy.datatypes.registry DEBUG 2024-02-23 12:54:56,822 [pN:main.1,p:69789,tN:Thread-2] Loaded converter: CONVERTER_molecules +galaxy.datatypes.registry DEBUG 2024-02-23 12:54:56,822 [pN:main.1,p:69789,tN:Thread-2] Loaded converter: CONVERTER_SMILES_to_MOL +galaxy.datatypes.registry DEBUG 2024-02-23 12:54:56,822 [pN:main.1,p:69789,tN:Thread-2] Loaded converter: CONVERTER_molecules +galaxy.datatypes.registry DEBUG 2024-02-23 12:54:56,822 [pN:main.1,p:69789,tN:Thread-2] Loaded converter: CONVERTER_smiles_to_smiles +galaxy.datatypes.registry DEBUG 2024-02-23 12:54:56,822 [pN:main.1,p:69789,tN:Thread-2] Loaded converter: CONVERTER_molecules +galaxy.datatypes.registry DEBUG 2024-02-23 12:54:56,822 [pN:main.1,p:69789,tN:Thread-2] Loaded converter: CONVERTER_molecules +galaxy.datatypes.registry DEBUG 2024-02-23 12:54:56,823 [pN:main.1,p:69789,tN:Thread-2] Loaded converter: CONVERTER_molecules +galaxy.datatypes.registry DEBUG 2024-02-23 12:54:56,823 [pN:main.1,p:69789,tN:Thread-2] Loaded converter: CONVERTER_molecules +galaxy.datatypes.registry DEBUG 2024-02-23 12:54:56,823 [pN:main.1,p:69789,tN:Thread-2] Loaded converter: CONVERTER_molecules +galaxy.datatypes.registry DEBUG 2024-02-23 12:54:56,823 [pN:main.1,p:69789,tN:Thread-2] Loaded converter: CONVERTER_molecules +galaxy.datatypes.registry DEBUG 2024-02-23 12:54:56,823 [pN:main.1,p:69789,tN:Thread-2] Loaded converter: CONVERTER_inchi_to_mol +galaxy.datatypes.registry DEBUG 2024-02-23 12:54:56,823 [pN:main.1,p:69789,tN:Thread-2] Loaded converter: CONVERTER_molecules +galaxy.datatypes.registry DEBUG 2024-02-23 12:54:56,823 [pN:main.1,p:69789,tN:Thread-2] Loaded converter: CONVERTER_molecules +galaxy.datatypes.registry DEBUG 2024-02-23 12:54:56,823 [pN:main.1,p:69789,tN:Thread-2] Loaded converter: CONVERTER_molecules +galaxy.datatypes.registry DEBUG 2024-02-23 12:54:56,823 [pN:main.1,p:69789,tN:Thread-2] Loaded converter: CONVERTER_molecules +galaxy.datatypes.registry DEBUG 2024-02-23 12:54:56,824 [pN:main.1,p:69789,tN:Thread-2] Loaded converter: CONVERTER_molecules +galaxy.datatypes.registry DEBUG 2024-02-23 12:54:56,824 [pN:main.1,p:69789,tN:Thread-2] Loaded converter: CONVERTER_molecules +galaxy.datatypes.registry DEBUG 2024-02-23 12:54:56,824 [pN:main.1,p:69789,tN:Thread-2] Loaded converter: CONVERTER_molecules +galaxy.datatypes.registry DEBUG 2024-02-23 12:54:56,824 [pN:main.1,p:69789,tN:Thread-2] Loaded converter: CONVERTER_molecules +galaxy.datatypes.registry DEBUG 2024-02-23 12:54:56,824 [pN:main.1,p:69789,tN:Thread-2] Loaded converter: CONVERTER_molecules +galaxy.datatypes.registry DEBUG 2024-02-23 12:54:56,824 [pN:main.1,p:69789,tN:Thread-2] Loaded converter: CONVERTER_molecules +galaxy.datatypes.registry DEBUG 2024-02-23 12:54:56,825 [pN:main.1,p:69789,tN:Thread-2] Loaded converter: CONVERTER_mol2_to_mol +galaxy.datatypes.registry DEBUG 2024-02-23 12:54:56,825 [pN:main.1,p:69789,tN:Thread-2] Loaded converter: CONVERTER_molecules +galaxy.datatypes.registry DEBUG 2024-02-23 12:54:56,825 [pN:main.1,p:69789,tN:Thread-2] Loaded converter: CONVERTER_cml_to_smiles +galaxy.datatypes.registry DEBUG 2024-02-23 12:54:56,825 [pN:main.1,p:69789,tN:Thread-2] Loaded converter: CONVERTER_molecules +galaxy.datatypes.registry DEBUG 2024-02-23 12:54:56,825 [pN:main.1,p:69789,tN:Thread-2] Loaded converter: CONVERTER_molecules +galaxy.datatypes.registry DEBUG 2024-02-23 12:54:56,825 [pN:main.1,p:69789,tN:Thread-2] Loaded converter: CONVERTER_molecules +galaxy.datatypes.registry DEBUG 2024-02-23 12:54:56,825 [pN:main.1,p:69789,tN:Thread-2] Loaded converter: CONVERTER_Pdb_to_Gro_0 +galaxy.datatypes.registry DEBUG 2024-02-23 12:54:56,825 [pN:main.1,p:69789,tN:Thread-2] Loaded converter: CONVERTER_mdconvert +galaxy.datatypes.registry DEBUG 2024-02-23 12:54:56,826 [pN:main.1,p:69789,tN:Thread-2] Loaded converter: CONVERTER_mdconvert +galaxy.datatypes.registry DEBUG 2024-02-23 12:54:56,826 [pN:main.1,p:69789,tN:Thread-2] Loaded converter: CONVERTER_mdconvert +galaxy.datatypes.registry DEBUG 2024-02-23 12:54:56,826 [pN:main.1,p:69789,tN:Thread-2] Loaded converter: CONVERTER_mdconvert +galaxy.datatypes.registry DEBUG 2024-02-23 12:54:56,826 [pN:main.1,p:69789,tN:Thread-2] Loaded converter: CONVERTER_mdconvert +galaxy.datatypes.registry DEBUG 2024-02-23 12:54:56,826 [pN:main.1,p:69789,tN:Thread-2] Loaded converter: CONVERTER_mdconvert +galaxy.datatypes.registry DEBUG 2024-02-23 12:54:56,826 [pN:main.1,p:69789,tN:Thread-2] Loaded converter: CONVERTER_Gro_to_Pdb_0 +galaxy.datatypes.registry DEBUG 2024-02-23 12:54:56,826 [pN:main.1,p:69789,tN:Thread-2] Loaded converter: CONVERTER_ref_to_seq_taxomony +galaxy.datatypes.registry DEBUG 2024-02-23 12:54:56,826 [pN:main.1,p:69789,tN:Thread-2] Loaded converter: CONVERTER_neostorezip_to_neostore +galaxy.datatypes.registry DEBUG 2024-02-23 12:54:56,829 [pN:main.1,p:69789,tN:Thread-2] Loaded external metadata tool: __SET_METADATA__ +galaxy.tools.special_tools DEBUG 2024-02-23 12:54:56,838 [pN:main.1,p:69789,tN:Thread-2] Loaded history export tool: __EXPORT_HISTORY__ +galaxy.tools.special_tools DEBUG 2024-02-23 12:54:56,847 [pN:main.1,p:69789,tN:Thread-2] Loaded history export to uri tool: __EXPORT_HISTORY_TO_URI__ +galaxy.tools.special_tools DEBUG 2024-02-23 12:54:56,850 [pN:main.1,p:69789,tN:Thread-2] Loaded history import tool: __IMPORT_HISTORY__ +galaxy.tools.special_tools DEBUG 2024-02-23 12:54:56,853 [pN:main.1,p:69789,tN:Thread-2] Loaded data fetch tool: __DATA_FETCH__ +galaxy.queue_worker INFO 2024-02-23 12:54:56,853 [pN:main.1,p:69789,tN:Thread-2] Queuing async task rebuild_toolbox_search_index for main.1. +galaxy.queue_worker DEBUG 2024-02-23 12:54:56,870 [pN:main.1,p:69789,tN:Thread-2] Toolbox reload (180.501 ms) +galaxy.queue_worker INFO 2024-02-23 12:54:56,870 [pN:main.1,p:69789,tN:Thread-2] Queuing async task rebuild_toolbox_search_index for main.1. +galaxy.web_stack INFO 2024-02-23 12:54:56,878 [pN:main.1,p:69789,tN:Thread-2] Galaxy server instance 'main.1' is running +[92m +Serving on http://127.0.0.1:56751 +[0m +multipart.multipart DEBUG 2024-02-23 12:54:57,422 [pN:main.1,p:69789,tN:MainThread] Calling on_field_start with no data +multipart.multipart DEBUG 2024-02-23 12:54:57,423 [pN:main.1,p:69789,tN:MainThread] Calling on_field_name with data[0:4] +multipart.multipart DEBUG 2024-02-23 12:54:57,423 [pN:main.1,p:69789,tN:MainThread] Calling on_field_data with data[5:63] +multipart.multipart DEBUG 2024-02-23 12:54:57,423 [pN:main.1,p:69789,tN:MainThread] Calling on_field_end with no data +multipart.multipart DEBUG 2024-02-23 12:54:57,423 [pN:main.1,p:69789,tN:MainThread] Calling on_end with no data +galaxy.tools INFO 2024-02-23 12:54:57,592 [pN:main.1,p:69789,tN:WSGI_2] Validated and populated state for tool request (11.644 ms) +galaxy.tools.actions.upload DEBUG 2024-02-23 12:54:57,598 [pN:main.1,p:69789,tN:WSGI_2] Persisted uploads (0.132 ms) +galaxy.tools.actions.upload DEBUG 2024-02-23 12:54:57,655 [pN:main.1,p:69789,tN:WSGI_2] Checked uploads (57.132 ms) +galaxy.tools.actions.upload DEBUG 2024-02-23 12:54:57,658 [pN:main.1,p:69789,tN:WSGI_2] Created upload job (2.668 ms) +galaxy.tools.execute DEBUG 2024-02-23 12:54:57,658 [pN:main.1,p:69789,tN:WSGI_2] Tool upload1 created job None (60.490 ms) +galaxy.web_stack.handlers INFO 2024-02-23 12:54:57,677 [pN:main.1,p:69789,tN:WSGI_2] (Job[id=1,tool_id=upload1]) Handler '_default_' assigned using 'HANDLER_ASSIGNMENT_METHODS.DB_SKIP_LOCKED' assignment method +galaxy.tools.execute DEBUG 2024-02-23 12:54:57,681 [pN:main.1,p:69789,tN:WSGI_2] Created 1 job(s) for tool upload1 request (88.980 ms) +galaxy.jobs.mapper DEBUG 2024-02-23 12:54:57,836 [pN:main.1,p:69789,tN:JobHandlerQueue.monitor_thread] (1) Mapped job to destination id: docker_local +galaxy.jobs.handler DEBUG 2024-02-23 12:54:57,841 [pN:main.1,p:69789,tN:JobHandlerQueue.monitor_thread] (1) Dispatching to local runner +galaxy.jobs DEBUG 2024-02-23 12:54:57,851 [pN:main.1,p:69789,tN:JobHandlerQueue.monitor_thread] (1) Persisting job destination (destination id: docker_local) +galaxy.jobs DEBUG 2024-02-23 12:54:57,862 [pN:main.1,p:69789,tN:JobHandlerQueue.monitor_thread] (1) Working directory for job is: /tmp/tmpijf8h9m9/job_working_directory/000/1 +galaxy.jobs.runners DEBUG 2024-02-23 12:54:57,879 [pN:main.1,p:69789,tN:JobHandlerQueue.monitor_thread] Job [1] queued (37.923 ms) +galaxy.jobs.handler INFO 2024-02-23 12:54:57,907 [pN:main.1,p:69789,tN:JobHandlerQueue.monitor_thread] (1) Job dispatched +galaxy.queue_worker INFO 2024-02-23 12:54:57,910 [pN:main.1,p:69789,tN:Thread-1] Instance 'main.1' received 'rebuild_toolbox_search_index' task, executing now. +galaxy.tools.search DEBUG 2024-02-23 12:54:57,910 [pN:main.1,p:69789,tN:Thread-1] Starting to build toolbox index of panel default. +galaxy.tools.search DEBUG 2024-02-23 12:54:57,949 [pN:main.1,p:69789,tN:Thread-1] Toolbox index of panel default finished (38.922 ms) +galaxy.tools.search DEBUG 2024-02-23 12:54:57,950 [pN:main.1,p:69789,tN:Thread-1] Starting to build toolbox index of panel ontology:edam_operations. +galaxy.tools.search DEBUG 2024-02-23 12:54:57,982 [pN:main.1,p:69789,tN:Thread-1] Toolbox index of panel ontology:edam_operations finished (32.299 ms) +galaxy.tools.search DEBUG 2024-02-23 12:54:57,983 [pN:main.1,p:69789,tN:Thread-1] Starting to build toolbox index of panel ontology:edam_topics. +galaxy.tools.search DEBUG 2024-02-23 12:54:58,031 [pN:main.1,p:69789,tN:Thread-1] Toolbox index of panel ontology:edam_topics finished (48.427 ms) +galaxy.queue_worker INFO 2024-02-23 12:54:58,052 [pN:main.1,p:69789,tN:Thread-1] Instance 'main.1' received 'rebuild_toolbox_search_index' task, executing now. +galaxy.tools.search DEBUG 2024-02-23 12:54:58,052 [pN:main.1,p:69789,tN:Thread-1] Starting to build toolbox index of panel default. +galaxy.tools.search DEBUG 2024-02-23 12:54:58,064 [pN:main.1,p:69789,tN:Thread-1] Toolbox index of panel default finished (11.728 ms) +galaxy.tools.search DEBUG 2024-02-23 12:54:58,064 [pN:main.1,p:69789,tN:Thread-1] Starting to build toolbox index of panel ontology:edam_operations. +galaxy.tools.search DEBUG 2024-02-23 12:54:58,081 [pN:main.1,p:69789,tN:Thread-1] Toolbox index of panel ontology:edam_operations finished (14.751 ms) +galaxy.tools.search DEBUG 2024-02-23 12:54:58,081 [pN:main.1,p:69789,tN:Thread-1] Starting to build toolbox index of panel ontology:edam_topics. +galaxy.tools.search DEBUG 2024-02-23 12:54:58,112 [pN:main.1,p:69789,tN:Thread-1] Toolbox index of panel ontology:edam_topics finished (30.864 ms) +galaxy.jobs DEBUG 2024-02-23 12:54:58,142 [pN:main.1,p:69789,tN:LocalRunner.work_thread-0] Job wrapper for Job [1] prepared (216.610 ms) +galaxy.tool_util.deps.containers INFO 2024-02-23 12:54:58,144 [pN:main.1,p:69789,tN:LocalRunner.work_thread-0] Checking with container resolver [ExplicitContainerResolver[]] found description [None] +galaxy.tool_util.deps.containers INFO 2024-02-23 12:54:58,144 [pN:main.1,p:69789,tN:LocalRunner.work_thread-0] Checking with container resolver [CachedMulledDockerContainerResolver[namespace=biocontainers]] found description [None] +galaxy.tool_util.deps.containers INFO 2024-02-23 12:54:58,144 [pN:main.1,p:69789,tN:LocalRunner.work_thread-0] Checking with container resolver [CachedMulledDockerContainerResolver[namespace=local]] found description [None] +galaxy.tool_util.deps.containers INFO 2024-02-23 12:54:58,144 [pN:main.1,p:69789,tN:LocalRunner.work_thread-0] Checking with container resolver [MulledDockerContainerResolver[namespace=biocontainers]] found description [None] +galaxy.tool_util.deps.containers INFO 2024-02-23 12:54:58,144 [pN:main.1,p:69789,tN:LocalRunner.work_thread-0] Checking with container resolver [BuildDockerContainerResolver[namespace=local]] found description [None] +galaxy.jobs.command_factory INFO 2024-02-23 12:54:58,171 [pN:main.1,p:69789,tN:LocalRunner.work_thread-0] Built script [/tmp/tmpijf8h9m9/job_working_directory/000/1/tool_script.sh] for tool command [python '/scratch/rico/galaxy/tools/data_source/upload.py' '/scratch/rico/galaxy' '/tmp/tmpijf8h9m9/job_working_directory/000/1/registry.xml' '/tmp/tmpijf8h9m9/job_working_directory/000/1/upload_params.json' '1:/tmp/tmpijf8h9m9/job_working_directory/000/1/outputs/dataset_d0b955f0-4f06-4a8e-ba48-d46c4920754d_files:/tmp/tmpijf8h9m9/job_working_directory/000/1/outputs/dataset_d0b955f0-4f06-4a8e-ba48-d46c4920754d.dat'] +galaxy.jobs.runners DEBUG 2024-02-23 12:54:58,220 [pN:main.1,p:69789,tN:LocalRunner.work_thread-0] (1) command is: mkdir -p working outputs configs +if [ -d _working ]; then + rm -rf working/ outputs/ configs/; cp -R _working working; cp -R _outputs outputs; cp -R _configs configs +else + cp -R working _working; cp -R outputs _outputs; cp -R configs _configs +fi +cd working; /bin/bash /tmp/tmpijf8h9m9/job_working_directory/000/1/tool_script.sh > '../outputs/tool_stdout' 2> '../outputs/tool_stderr'; return_code=$?; echo $return_code > /tmp/tmpijf8h9m9/job_working_directory/000/1/galaxy_1.ec; cd '/tmp/tmpijf8h9m9/job_working_directory/000/1'; +[ "$GALAXY_VIRTUAL_ENV" = "None" ] && GALAXY_VIRTUAL_ENV="$_GALAXY_VIRTUAL_ENV"; _galaxy_setup_environment True; python metadata/set.py; sh -c "exit $return_code" +galaxy.jobs.runners.local DEBUG 2024-02-23 12:54:58,243 [pN:main.1,p:69789,tN:LocalRunner.work_thread-0] (1) executing job script: /tmp/tmpijf8h9m9/job_working_directory/000/1/galaxy_1.sh +galaxy.jobs.runners.util.process_groups DEBUG 2024-02-23 12:55:04,493 [pN:main.1,p:69789,tN:LocalRunner.work_thread-0] check_pg(): No process found in process group 69816 +galaxy.jobs.runners.local DEBUG 2024-02-23 12:55:04,494 [pN:main.1,p:69789,tN:LocalRunner.work_thread-0] execution finished: /tmp/tmpijf8h9m9/job_working_directory/000/1/galaxy_1.sh +galaxy.jobs DEBUG 2024-02-23 12:55:04,519 [pN:main.1,p:69789,tN:LocalRunner.work_thread-0] finish(): Moved /tmp/tmpijf8h9m9/job_working_directory/000/1/outputs/dataset_d0b955f0-4f06-4a8e-ba48-d46c4920754d.dat to /tmp/tmpijf8h9m9/files/d/0/b/dataset_d0b955f0-4f06-4a8e-ba48-d46c4920754d.dat +galaxy.model.metadata DEBUG 2024-02-23 12:55:04,528 [pN:main.1,p:69789,tN:LocalRunner.work_thread-0] loading metadata from file for: HistoryDatasetAssociation 1 +galaxy.jobs DEBUG 2024-02-23 12:55:04,560 [pN:main.1,p:69789,tN:LocalRunner.work_thread-0] job_wrapper.finish for job 1 executed (47.817 ms) +galaxy.tools INFO 2024-02-23 12:55:04,667 [pN:main.1,p:69789,tN:WSGI_0] Validated and populated state for tool request (12.618 ms) +galaxy.tools.actions INFO 2024-02-23 12:55:04,674 [pN:main.1,p:69789,tN:WSGI_0] Handled output named adaptor_report for tool ncbi_fcs_adaptor (3.398 ms) +galaxy.tools.actions INFO 2024-02-23 12:55:04,676 [pN:main.1,p:69789,tN:WSGI_0] Handled output named clean_fasta for tool ncbi_fcs_adaptor (2.407 ms) +galaxy.tools.actions INFO 2024-02-23 12:55:04,683 [pN:main.1,p:69789,tN:WSGI_0] Added output datasets to history (7.322 ms) +galaxy.tools.actions INFO 2024-02-23 12:55:04,685 [pN:main.1,p:69789,tN:WSGI_0] Setup for job Job[unflushed,tool_id=ncbi_fcs_adaptor] complete, ready to be enqueued (1.414 ms) +galaxy.tools.execute DEBUG 2024-02-23 12:55:04,685 [pN:main.1,p:69789,tN:WSGI_0] Tool ncbi_fcs_adaptor created job None (16.695 ms) +galaxy.web_stack.handlers INFO 2024-02-23 12:55:04,708 [pN:main.1,p:69789,tN:WSGI_0] (Job[id=2,tool_id=ncbi_fcs_adaptor]) Handler '_default_' assigned using 'HANDLER_ASSIGNMENT_METHODS.DB_SKIP_LOCKED' assignment method +galaxy.tools.execute DEBUG 2024-02-23 12:55:04,712 [pN:main.1,p:69789,tN:WSGI_0] Created 1 job(s) for tool ncbi_fcs_adaptor request (45.057 ms) +galaxy.jobs.mapper DEBUG 2024-02-23 12:55:05,068 [pN:main.1,p:69789,tN:JobHandlerQueue.monitor_thread] (2) Mapped job to destination id: docker_local +galaxy.jobs.handler DEBUG 2024-02-23 12:55:05,071 [pN:main.1,p:69789,tN:JobHandlerQueue.monitor_thread] (2) Dispatching to local runner +galaxy.jobs DEBUG 2024-02-23 12:55:05,077 [pN:main.1,p:69789,tN:JobHandlerQueue.monitor_thread] (2) Persisting job destination (destination id: docker_local) +galaxy.jobs DEBUG 2024-02-23 12:55:05,082 [pN:main.1,p:69789,tN:JobHandlerQueue.monitor_thread] (2) Working directory for job is: /tmp/tmpijf8h9m9/job_working_directory/000/2 +galaxy.jobs.runners DEBUG 2024-02-23 12:55:05,089 [pN:main.1,p:69789,tN:JobHandlerQueue.monitor_thread] Job [2] queued (17.269 ms) +galaxy.jobs.handler INFO 2024-02-23 12:55:05,099 [pN:main.1,p:69789,tN:JobHandlerQueue.monitor_thread] (2) Job dispatched +galaxy.security.object_wrapper WARNING 2024-02-23 12:55:05,138 [pN:main.1,p:69789,tN:LocalRunner.work_thread-0] Unable to create dynamic subclass SafeStringWrapper__galaxy.model.none_like.None__NoneType__NotImplementedType__Number__SafeStringWrapper__ToolParameterValueWrapper__bool__bytearray__ellipsis for <class 'galaxy.model.none_like.NoneDataset'>, None: type() doesn't support MRO entry resolution; use types.new_class() +galaxy.jobs DEBUG 2024-02-23 12:55:05,150 [pN:main.1,p:69789,tN:LocalRunner.work_thread-0] Job wrapper for Job [2] prepared (41.660 ms) +galaxy.tool_util.deps.containers INFO 2024-02-23 12:55:05,151 [pN:main.1,p:69789,tN:LocalRunner.work_thread-0] Checking with container resolver [ExplicitContainerResolver[]] found description [ContainerDescription[identifier=ncbi/fcs-adaptor:0.5.0,type=docker]] +galaxy.jobs.command_factory INFO 2024-02-23 12:55:05,194 [pN:main.1,p:69789,tN:LocalRunner.work_thread-0] Built script [/tmp/tmpijf8h9m9/job_working_directory/000/2/tool_script.sh] for tool command [/app/fcs/bin/av_screen_x -o "$(pwd)" '--prok' '/tmp/tmpijf8h9m9/files/d/0/b/dataset_d0b955f0-4f06-4a8e-ba48-d46c4920754d.dat'] +galaxy.jobs.runners DEBUG 2024-02-23 12:55:05,228 [pN:main.1,p:69789,tN:LocalRunner.work_thread-0] (2) command is: mkdir -p working outputs configs +if [ -d _working ]; then + rm -rf working/ outputs/ configs/; cp -R _working working; cp -R _outputs outputs; cp -R _configs configs +else + cp -R working _working; cp -R outputs _outputs; cp -R configs _configs +fi +cd working; +_on_exit() { + docker kill 9fa5055ffdcf4558ac0907bc0f402bd6 &> /dev/null +} +trap _on_exit EXIT +docker inspect ncbi/fcs-adaptor:0.5.0 > /dev/null 2>&1 +[ $? -ne 0 ] && docker pull ncbi/fcs-adaptor:0.5.0 > /dev/null 2>&1 + +docker run -e "GALAXY_SLOTS=$GALAXY_SLOTS" -e "GALAXY_MEMORY_MB=$GALAXY_MEMORY_MB" -e "GALAXY_MEMORY_MB_PER_SLOT=$GALAXY_MEMORY_MB_PER_SLOT" -e "HOME=$HOME" -e "_GALAXY_JOB_HOME_DIR=$_GALAXY_JOB_HOME_DIR" -e "_GALAXY_JOB_TMP_DIR=$_GALAXY_JOB_TMP_DIR" -e "TMPDIR=$TMPDIR" -e "TMP=$TMP" -e "TEMP=$TEMP" --name 9fa5055ffdcf4558ac0907bc0f402bd6 -v "$_GALAXY_JOB_TMP_DIR:$_GALAXY_JOB_TMP_DIR:rw" -v "$TMPDIR:$TMPDIR:rw" -v "$TMP:$TMP:rw" -v "$TEMP:$TEMP:rw" -v /scratch/rico/galaxy:/scratch/rico/galaxy:ro -v /scratch/rico/galaxytools/tools/ncbi_fcs_adaptor:/scratch/rico/galaxytools/tools/ncbi_fcs_adaptor:ro -v /tmp/tmpijf8h9m9/job_working_directory/000/2:/tmp/tmpijf8h9m9/job_working_directory/000/2:ro -v /tmp/tmpijf8h9m9/job_working_directory/000/2/outputs:/tmp/tmpijf8h9m9/job_working_directory/000/2/outputs:rw -v "$_GALAXY_JOB_HOME_DIR:$_GALAXY_JOB_HOME_DIR:rw" -v /tmp/tmpijf8h9m9/job_working_directory/000/2/working:/tmp/tmpijf8h9m9/job_working_directory/000/2/working:rw -v /tmp/tmpijf8h9m9/files:/tmp/tmpijf8h9m9/files:ro -v /scratch/rico/galaxy/tool-data:/scratch/rico/galaxy/tool-data:ro --cpus ${GALAXY_SLOTS:-1} -w /tmp/tmpijf8h9m9/job_working_directory/000/2/working --rm --user 1028:1028 ncbi/fcs-adaptor:0.5.0 /bin/sh /tmp/tmpijf8h9m9/job_working_directory/000/2/tool_script.sh > '../outputs/tool_stdout' 2> '../outputs/tool_stderr'; return_code=$?; echo $return_code > /tmp/tmpijf8h9m9/job_working_directory/000/2/galaxy_2.ec; +if [ -f "/tmp/tmpijf8h9m9/job_working_directory/000/2/working/fcs_adaptor_report.txt" ] ; then cp "/tmp/tmpijf8h9m9/job_working_directory/000/2/working/fcs_adaptor_report.txt" "/tmp/tmpijf8h9m9/job_working_directory/000/2/outputs/dataset_bb6055de-1b98-4c16-9f0e-38e505701f5b.dat" ; fi; +if [ -f "/tmp/tmpijf8h9m9/job_working_directory/000/2/working/cleaned_sequences/"*".dat" ] ; then cp "/tmp/tmpijf8h9m9/job_working_directory/000/2/working/cleaned_sequences/"*".dat" "/tmp/tmpijf8h9m9/job_working_directory/000/2/outputs/dataset_4f314a69-7d4c-4764-9515-f312e5ef96f0.dat" ; fi; cd '/tmp/tmpijf8h9m9/job_working_directory/000/2'; +[ "$GALAXY_VIRTUAL_ENV" = "None" ] && GALAXY_VIRTUAL_ENV="$_GALAXY_VIRTUAL_ENV"; _galaxy_setup_environment True; python metadata/set.py; sh -c "exit $return_code" +galaxy.jobs.runners.local DEBUG 2024-02-23 12:55:05,249 [pN:main.1,p:69789,tN:LocalRunner.work_thread-0] (2) executing job script: /tmp/tmpijf8h9m9/job_working_directory/000/2/galaxy_2.sh +galaxy.jobs.runners.util.process_groups DEBUG 2024-02-23 12:55:53,942 [pN:main.1,p:69789,tN:LocalRunner.work_thread-0] check_pg(): No process found in process group 70013 +galaxy.jobs.runners.local DEBUG 2024-02-23 12:55:53,944 [pN:main.1,p:69789,tN:LocalRunner.work_thread-0] execution finished: /tmp/tmpijf8h9m9/job_working_directory/000/2/galaxy_2.sh +galaxy.jobs DEBUG 2024-02-23 12:55:53,966 [pN:main.1,p:69789,tN:LocalRunner.work_thread-0] finish(): Moved /tmp/tmpijf8h9m9/job_working_directory/000/2/outputs/dataset_bb6055de-1b98-4c16-9f0e-38e505701f5b.dat to /tmp/tmpijf8h9m9/files/b/b/6/dataset_bb6055de-1b98-4c16-9f0e-38e505701f5b.dat +galaxy.jobs DEBUG 2024-02-23 12:55:53,966 [pN:main.1,p:69789,tN:LocalRunner.work_thread-0] finish(): Moved /tmp/tmpijf8h9m9/job_working_directory/000/2/outputs/dataset_4f314a69-7d4c-4764-9515-f312e5ef96f0.dat to /tmp/tmpijf8h9m9/files/4/f/3/dataset_4f314a69-7d4c-4764-9515-f312e5ef96f0.dat +galaxy.model.metadata DEBUG 2024-02-23 12:55:53,975 [pN:main.1,p:69789,tN:LocalRunner.work_thread-0] loading metadata from file for: HistoryDatasetAssociation 2 +galaxy.model.metadata DEBUG 2024-02-23 12:55:53,981 [pN:main.1,p:69789,tN:LocalRunner.work_thread-0] loading metadata from file for: HistoryDatasetAssociation 3 +galaxy.jobs DEBUG 2024-02-23 12:55:54,011 [pN:main.1,p:69789,tN:LocalRunner.work_thread-0] job_wrapper.finish for job 2 executed (51.139 ms) +multipart.multipart DEBUG 2024-02-23 12:55:54,703 [pN:main.1,p:69789,tN:MainThread] Calling on_field_start with no data +multipart.multipart DEBUG 2024-02-23 12:55:54,703 [pN:main.1,p:69789,tN:MainThread] Calling on_field_name with data[0:4] +multipart.multipart DEBUG 2024-02-23 12:55:54,703 [pN:main.1,p:69789,tN:MainThread] Calling on_field_data with data[5:63] +multipart.multipart DEBUG 2024-02-23 12:55:54,703 [pN:main.1,p:69789,tN:MainThread] Calling on_field_end with no data +multipart.multipart DEBUG 2024-02-23 12:55:54,703 [pN:main.1,p:69789,tN:MainThread] Calling on_end with no data +galaxy.tools INFO 2024-02-23 12:55:54,855 [pN:main.1,p:69789,tN:WSGI_8] Validated and populated state for tool request (8.184 ms) +galaxy.tools.actions.upload DEBUG 2024-02-23 12:55:54,857 [pN:main.1,p:69789,tN:WSGI_8] Persisted uploads (0.122 ms) +galaxy.tools.actions.upload DEBUG 2024-02-23 12:55:54,928 [pN:main.1,p:69789,tN:WSGI_8] Checked uploads (70.077 ms) +galaxy.tools.actions.upload DEBUG 2024-02-23 12:55:54,931 [pN:main.1,p:69789,tN:WSGI_8] Created upload job (2.953 ms) +galaxy.tools.execute DEBUG 2024-02-23 12:55:54,931 [pN:main.1,p:69789,tN:WSGI_8] Tool upload1 created job None (73.807 ms) +galaxy.web_stack.handlers INFO 2024-02-23 12:55:54,945 [pN:main.1,p:69789,tN:WSGI_8] (Job[id=3,tool_id=upload1]) Handler '_default_' assigned using 'HANDLER_ASSIGNMENT_METHODS.DB_SKIP_LOCKED' assignment method +galaxy.tools.execute DEBUG 2024-02-23 12:55:54,949 [pN:main.1,p:69789,tN:WSGI_8] Created 1 job(s) for tool upload1 request (93.837 ms) +galaxy.jobs.mapper DEBUG 2024-02-23 12:55:55,192 [pN:main.1,p:69789,tN:JobHandlerQueue.monitor_thread] (3) Mapped job to destination id: docker_local +galaxy.jobs.handler DEBUG 2024-02-23 12:55:55,195 [pN:main.1,p:69789,tN:JobHandlerQueue.monitor_thread] (3) Dispatching to local runner +galaxy.jobs DEBUG 2024-02-23 12:55:55,201 [pN:main.1,p:69789,tN:JobHandlerQueue.monitor_thread] (3) Persisting job destination (destination id: docker_local) +galaxy.jobs DEBUG 2024-02-23 12:55:55,206 [pN:main.1,p:69789,tN:JobHandlerQueue.monitor_thread] (3) Working directory for job is: /tmp/tmpijf8h9m9/job_working_directory/000/3 +galaxy.jobs.runners DEBUG 2024-02-23 12:55:55,211 [pN:main.1,p:69789,tN:JobHandlerQueue.monitor_thread] Job [3] queued (15.993 ms) +galaxy.jobs.handler INFO 2024-02-23 12:55:55,221 [pN:main.1,p:69789,tN:JobHandlerQueue.monitor_thread] (3) Job dispatched +galaxy.jobs DEBUG 2024-02-23 12:55:55,303 [pN:main.1,p:69789,tN:LocalRunner.work_thread-2] Job wrapper for Job [3] prepared (72.444 ms) +galaxy.tool_util.deps.containers INFO 2024-02-23 12:55:55,303 [pN:main.1,p:69789,tN:LocalRunner.work_thread-2] Checking with container resolver [ExplicitContainerResolver[]] found description [None] +galaxy.tool_util.deps.containers INFO 2024-02-23 12:55:55,304 [pN:main.1,p:69789,tN:LocalRunner.work_thread-2] Checking with container resolver [CachedMulledDockerContainerResolver[namespace=biocontainers]] found description [None] +galaxy.tool_util.deps.containers INFO 2024-02-23 12:55:55,304 [pN:main.1,p:69789,tN:LocalRunner.work_thread-2] Checking with container resolver [CachedMulledDockerContainerResolver[namespace=local]] found description [None] +galaxy.tool_util.deps.containers INFO 2024-02-23 12:55:55,304 [pN:main.1,p:69789,tN:LocalRunner.work_thread-2] Checking with container resolver [MulledDockerContainerResolver[namespace=biocontainers]] found description [None] +galaxy.tool_util.deps.containers INFO 2024-02-23 12:55:55,304 [pN:main.1,p:69789,tN:LocalRunner.work_thread-2] Checking with container resolver [BuildDockerContainerResolver[namespace=local]] found description [None] +galaxy.jobs.command_factory INFO 2024-02-23 12:55:55,333 [pN:main.1,p:69789,tN:LocalRunner.work_thread-2] Built script [/tmp/tmpijf8h9m9/job_working_directory/000/3/tool_script.sh] for tool command [python '/scratch/rico/galaxy/tools/data_source/upload.py' '/scratch/rico/galaxy' '/tmp/tmpijf8h9m9/job_working_directory/000/3/registry.xml' '/tmp/tmpijf8h9m9/job_working_directory/000/3/upload_params.json' '4:/tmp/tmpijf8h9m9/job_working_directory/000/3/outputs/dataset_3361cae0-3148-41a0-9138-5c1182f5ad0a_files:/tmp/tmpijf8h9m9/job_working_directory/000/3/outputs/dataset_3361cae0-3148-41a0-9138-5c1182f5ad0a.dat'] +galaxy.jobs.runners DEBUG 2024-02-23 12:55:55,360 [pN:main.1,p:69789,tN:LocalRunner.work_thread-2] (3) command is: mkdir -p working outputs configs +if [ -d _working ]; then + rm -rf working/ outputs/ configs/; cp -R _working working; cp -R _outputs outputs; cp -R _configs configs +else + cp -R working _working; cp -R outputs _outputs; cp -R configs _configs +fi +cd working; /bin/bash /tmp/tmpijf8h9m9/job_working_directory/000/3/tool_script.sh > '../outputs/tool_stdout' 2> '../outputs/tool_stderr'; return_code=$?; echo $return_code > /tmp/tmpijf8h9m9/job_working_directory/000/3/galaxy_3.ec; cd '/tmp/tmpijf8h9m9/job_working_directory/000/3'; +[ "$GALAXY_VIRTUAL_ENV" = "None" ] && GALAXY_VIRTUAL_ENV="$_GALAXY_VIRTUAL_ENV"; _galaxy_setup_environment True; python metadata/set.py; sh -c "exit $return_code" +galaxy.jobs.runners.local DEBUG 2024-02-23 12:55:55,383 [pN:main.1,p:69789,tN:LocalRunner.work_thread-2] (3) executing job script: /tmp/tmpijf8h9m9/job_working_directory/000/3/galaxy_3.sh +galaxy.jobs.runners.util.process_groups DEBUG 2024-02-23 12:56:02,536 [pN:main.1,p:69789,tN:LocalRunner.work_thread-2] check_pg(): No process found in process group 70480 +galaxy.jobs.runners.local DEBUG 2024-02-23 12:56:02,538 [pN:main.1,p:69789,tN:LocalRunner.work_thread-2] execution finished: /tmp/tmpijf8h9m9/job_working_directory/000/3/galaxy_3.sh +galaxy.jobs DEBUG 2024-02-23 12:56:02,560 [pN:main.1,p:69789,tN:LocalRunner.work_thread-2] finish(): Moved /tmp/tmpijf8h9m9/job_working_directory/000/3/outputs/dataset_3361cae0-3148-41a0-9138-5c1182f5ad0a.dat to /tmp/tmpijf8h9m9/files/3/3/6/dataset_3361cae0-3148-41a0-9138-5c1182f5ad0a.dat +galaxy.model.metadata DEBUG 2024-02-23 12:56:02,569 [pN:main.1,p:69789,tN:LocalRunner.work_thread-2] loading metadata from file for: HistoryDatasetAssociation 4 +galaxy.jobs DEBUG 2024-02-23 12:56:02,595 [pN:main.1,p:69789,tN:LocalRunner.work_thread-2] job_wrapper.finish for job 3 executed (41.321 ms) +galaxy.tools INFO 2024-02-23 12:56:02,854 [pN:main.1,p:69789,tN:WSGI_5] Validated and populated state for tool request (4.172 ms) +galaxy.tools.actions INFO 2024-02-23 12:56:02,859 [pN:main.1,p:69789,tN:WSGI_5] Handled output named adaptor_report for tool ncbi_fcs_adaptor (1.302 ms) +galaxy.tools.actions INFO 2024-02-23 12:56:02,860 [pN:main.1,p:69789,tN:WSGI_5] Handled output named clean_fasta for tool ncbi_fcs_adaptor (0.785 ms) +galaxy.tools.actions DEBUG 2024-02-23 12:56:02,860 [pN:main.1,p:69789,tN:WSGI_5] Tool ncbi_fcs_adaptor output adaptor_log: dataset output filter (advanced['optional_log'] is not None and 'adaptor_log' in advanced['optional_log'].split(',')) failed: 'list' object has no attribute 'split' +galaxy.tools.actions INFO 2024-02-23 12:56:02,863 [pN:main.1,p:69789,tN:WSGI_5] Handled output named adaptor_log for tool ncbi_fcs_adaptor (3.228 ms) +galaxy.tools.actions DEBUG 2024-02-23 12:56:02,863 [pN:main.1,p:69789,tN:WSGI_5] Tool ncbi_fcs_adaptor output validate_fasta_log: dataset output filter (advanced['optional_log'] is not None and 'validate_fasta_log' in advanced['optional_log'].split(',')) failed: 'list' object has no attribute 'split' +galaxy.tools.actions INFO 2024-02-23 12:56:02,866 [pN:main.1,p:69789,tN:WSGI_5] Handled output named validate_fasta_log for tool ncbi_fcs_adaptor (2.553 ms) +galaxy.tools.actions INFO 2024-02-23 12:56:02,874 [pN:main.1,p:69789,tN:WSGI_5] Added output datasets to history (7.767 ms) +galaxy.tools.actions INFO 2024-02-23 12:56:02,876 [pN:main.1,p:69789,tN:WSGI_5] Setup for job Job[unflushed,tool_id=ncbi_fcs_adaptor] complete, ready to be enqueued (2.027 ms) +galaxy.tools.execute DEBUG 2024-02-23 12:56:02,876 [pN:main.1,p:69789,tN:WSGI_5] Tool ncbi_fcs_adaptor created job None (20.421 ms) +galaxy.web_stack.handlers INFO 2024-02-23 12:56:02,902 [pN:main.1,p:69789,tN:WSGI_5] (Job[id=4,tool_id=ncbi_fcs_adaptor]) Handler '_default_' assigned using 'HANDLER_ASSIGNMENT_METHODS.DB_SKIP_LOCKED' assignment method +galaxy.tools.execute DEBUG 2024-02-23 12:56:02,915 [pN:main.1,p:69789,tN:WSGI_5] Created 1 job(s) for tool ncbi_fcs_adaptor request (61.104 ms) +galaxy.jobs.mapper DEBUG 2024-02-23 12:56:03,436 [pN:main.1,p:69789,tN:JobHandlerQueue.monitor_thread] (4) Mapped job to destination id: docker_local +galaxy.jobs.handler DEBUG 2024-02-23 12:56:03,438 [pN:main.1,p:69789,tN:JobHandlerQueue.monitor_thread] (4) Dispatching to local runner +galaxy.jobs DEBUG 2024-02-23 12:56:03,443 [pN:main.1,p:69789,tN:JobHandlerQueue.monitor_thread] (4) Persisting job destination (destination id: docker_local) +galaxy.jobs DEBUG 2024-02-23 12:56:03,449 [pN:main.1,p:69789,tN:JobHandlerQueue.monitor_thread] (4) Working directory for job is: /tmp/tmpijf8h9m9/job_working_directory/000/4 +galaxy.jobs.runners DEBUG 2024-02-23 12:56:03,455 [pN:main.1,p:69789,tN:JobHandlerQueue.monitor_thread] Job [4] queued (16.098 ms) +galaxy.jobs.handler INFO 2024-02-23 12:56:03,463 [pN:main.1,p:69789,tN:JobHandlerQueue.monitor_thread] (4) Job dispatched +galaxy.jobs DEBUG 2024-02-23 12:56:03,506 [pN:main.1,p:69789,tN:LocalRunner.work_thread-2] Job wrapper for Job [4] prepared (36.021 ms) +galaxy.tool_util.deps.containers INFO 2024-02-23 12:56:03,506 [pN:main.1,p:69789,tN:LocalRunner.work_thread-2] Checking with container resolver [ExplicitContainerResolver[]] found description [ContainerDescription[identifier=ncbi/fcs-adaptor:0.5.0,type=docker]] +galaxy.jobs.command_factory INFO 2024-02-23 12:56:03,547 [pN:main.1,p:69789,tN:LocalRunner.work_thread-2] Built script [/tmp/tmpijf8h9m9/job_working_directory/000/4/tool_script.sh] for tool command [/app/fcs/bin/av_screen_x -o "$(pwd)" '--prok' '/tmp/tmpijf8h9m9/files/3/3/6/dataset_3361cae0-3148-41a0-9138-5c1182f5ad0a.dat'] +galaxy.jobs.runners DEBUG 2024-02-23 12:56:03,621 [pN:main.1,p:69789,tN:LocalRunner.work_thread-2] (4) command is: mkdir -p working outputs configs +if [ -d _working ]; then + rm -rf working/ outputs/ configs/; cp -R _working working; cp -R _outputs outputs; cp -R _configs configs +else + cp -R working _working; cp -R outputs _outputs; cp -R configs _configs +fi +cd working; +_on_exit() { + docker kill b953454bbdcb490db83493e625aba986 &> /dev/null +} +trap _on_exit EXIT +docker inspect ncbi/fcs-adaptor:0.5.0 > /dev/null 2>&1 +[ $? -ne 0 ] && docker pull ncbi/fcs-adaptor:0.5.0 > /dev/null 2>&1 + +docker run -e "GALAXY_SLOTS=$GALAXY_SLOTS" -e "GALAXY_MEMORY_MB=$GALAXY_MEMORY_MB" -e "GALAXY_MEMORY_MB_PER_SLOT=$GALAXY_MEMORY_MB_PER_SLOT" -e "HOME=$HOME" -e "_GALAXY_JOB_HOME_DIR=$_GALAXY_JOB_HOME_DIR" -e "_GALAXY_JOB_TMP_DIR=$_GALAXY_JOB_TMP_DIR" -e "TMPDIR=$TMPDIR" -e "TMP=$TMP" -e "TEMP=$TEMP" --name b953454bbdcb490db83493e625aba986 -v "$_GALAXY_JOB_TMP_DIR:$_GALAXY_JOB_TMP_DIR:rw" -v "$TMPDIR:$TMPDIR:rw" -v "$TMP:$TMP:rw" -v "$TEMP:$TEMP:rw" -v /scratch/rico/galaxy:/scratch/rico/galaxy:ro -v /scratch/rico/galaxytools/tools/ncbi_fcs_adaptor:/scratch/rico/galaxytools/tools/ncbi_fcs_adaptor:ro -v /tmp/tmpijf8h9m9/job_working_directory/000/4:/tmp/tmpijf8h9m9/job_working_directory/000/4:ro -v /tmp/tmpijf8h9m9/job_working_directory/000/4/outputs:/tmp/tmpijf8h9m9/job_working_directory/000/4/outputs:rw -v "$_GALAXY_JOB_HOME_DIR:$_GALAXY_JOB_HOME_DIR:rw" -v /tmp/tmpijf8h9m9/job_working_directory/000/4/working:/tmp/tmpijf8h9m9/job_working_directory/000/4/working:rw -v /tmp/tmpijf8h9m9/files:/tmp/tmpijf8h9m9/files:ro -v /scratch/rico/galaxy/tool-data:/scratch/rico/galaxy/tool-data:ro --cpus ${GALAXY_SLOTS:-1} -w /tmp/tmpijf8h9m9/job_working_directory/000/4/working --rm --user 1028:1028 ncbi/fcs-adaptor:0.5.0 /bin/sh /tmp/tmpijf8h9m9/job_working_directory/000/4/tool_script.sh > '../outputs/tool_stdout' 2> '../outputs/tool_stderr'; return_code=$?; echo $return_code > /tmp/tmpijf8h9m9/job_working_directory/000/4/galaxy_4.ec; +if [ -f "/tmp/tmpijf8h9m9/job_working_directory/000/4/working/fcs_adaptor_report.txt" ] ; then cp "/tmp/tmpijf8h9m9/job_working_directory/000/4/working/fcs_adaptor_report.txt" "/tmp/tmpijf8h9m9/job_working_directory/000/4/outputs/dataset_8f5eb96f-71ec-464d-9256-2eda033e242c.dat" ; fi; +if [ -f "/tmp/tmpijf8h9m9/job_working_directory/000/4/working/cleaned_sequences/"*".dat" ] ; then cp "/tmp/tmpijf8h9m9/job_working_directory/000/4/working/cleaned_sequences/"*".dat" "/tmp/tmpijf8h9m9/job_working_directory/000/4/outputs/dataset_a801cb02-42b3-4ed6-bcfd-2b2eb0a97a7f.dat" ; fi; +if [ -f "/tmp/tmpijf8h9m9/job_working_directory/000/4/working/fcs_adaptor.log" ] ; then cp "/tmp/tmpijf8h9m9/job_working_directory/000/4/working/fcs_adaptor.log" "/tmp/tmpijf8h9m9/job_working_directory/000/4/outputs/dataset_ecfaed24-c19f-4f60-bb41-2dc06c2cec3e.dat" ; fi; +if [ -f "/tmp/tmpijf8h9m9/job_working_directory/000/4/working/validate_fasta.txt" ] ; then cp "/tmp/tmpijf8h9m9/job_working_directory/000/4/working/validate_fasta.txt" "/tmp/tmpijf8h9m9/job_working_directory/000/4/outputs/dataset_fa88d599-dff3-404d-8ac2-e1986a02afcb.dat" ; fi; cd '/tmp/tmpijf8h9m9/job_working_directory/000/4'; +[ "$GALAXY_VIRTUAL_ENV" = "None" ] && GALAXY_VIRTUAL_ENV="$_GALAXY_VIRTUAL_ENV"; _galaxy_setup_environment True; python metadata/set.py; sh -c "exit $return_code" +galaxy.jobs.runners.local DEBUG 2024-02-23 12:56:03,646 [pN:main.1,p:69789,tN:LocalRunner.work_thread-2] (4) executing job script: /tmp/tmpijf8h9m9/job_working_directory/000/4/galaxy_4.sh +galaxy.jobs.runners.util.process_groups DEBUG 2024-02-23 12:56:56,297 [pN:main.1,p:69789,tN:LocalRunner.work_thread-2] check_pg(): No process found in process group 70635 +galaxy.jobs.runners.local DEBUG 2024-02-23 12:56:56,299 [pN:main.1,p:69789,tN:LocalRunner.work_thread-2] execution finished: /tmp/tmpijf8h9m9/job_working_directory/000/4/galaxy_4.sh +galaxy.jobs DEBUG 2024-02-23 12:56:56,327 [pN:main.1,p:69789,tN:LocalRunner.work_thread-2] finish(): Moved /tmp/tmpijf8h9m9/job_working_directory/000/4/outputs/dataset_8f5eb96f-71ec-464d-9256-2eda033e242c.dat to /tmp/tmpijf8h9m9/files/8/f/5/dataset_8f5eb96f-71ec-464d-9256-2eda033e242c.dat +galaxy.jobs DEBUG 2024-02-23 12:56:56,327 [pN:main.1,p:69789,tN:LocalRunner.work_thread-2] finish(): Moved /tmp/tmpijf8h9m9/job_working_directory/000/4/outputs/dataset_a801cb02-42b3-4ed6-bcfd-2b2eb0a97a7f.dat to /tmp/tmpijf8h9m9/files/a/8/0/dataset_a801cb02-42b3-4ed6-bcfd-2b2eb0a97a7f.dat +galaxy.jobs DEBUG 2024-02-23 12:56:56,327 [pN:main.1,p:69789,tN:LocalRunner.work_thread-2] finish(): Moved /tmp/tmpijf8h9m9/job_working_directory/000/4/outputs/dataset_ecfaed24-c19f-4f60-bb41-2dc06c2cec3e.dat to /tmp/tmpijf8h9m9/files/e/c/f/dataset_ecfaed24-c19f-4f60-bb41-2dc06c2cec3e.dat +galaxy.jobs DEBUG 2024-02-23 12:56:56,328 [pN:main.1,p:69789,tN:LocalRunner.work_thread-2] finish(): Moved /tmp/tmpijf8h9m9/job_working_directory/000/4/outputs/dataset_fa88d599-dff3-404d-8ac2-e1986a02afcb.dat to /tmp/tmpijf8h9m9/files/f/a/8/dataset_fa88d599-dff3-404d-8ac2-e1986a02afcb.dat +galaxy.model.metadata DEBUG 2024-02-23 12:56:56,339 [pN:main.1,p:69789,tN:LocalRunner.work_thread-2] loading metadata from file for: HistoryDatasetAssociation 5 +galaxy.model.metadata DEBUG 2024-02-23 12:56:56,343 [pN:main.1,p:69789,tN:LocalRunner.work_thread-2] loading metadata from file for: HistoryDatasetAssociation 6 +galaxy.model.metadata DEBUG 2024-02-23 12:56:56,346 [pN:main.1,p:69789,tN:LocalRunner.work_thread-2] loading metadata from file for: HistoryDatasetAssociation 7 +galaxy.model.metadata DEBUG 2024-02-23 12:56:56,369 [pN:main.1,p:69789,tN:LocalRunner.work_thread-2] loading metadata from file for: HistoryDatasetAssociation 8 +galaxy.jobs DEBUG 2024-02-23 12:56:56,431 [pN:main.1,p:69789,tN:LocalRunner.work_thread-2] job_wrapper.finish for job 4 executed (109.753 ms) +galaxy.queue_worker INFO 2024-02-23 12:56:58,020 [pN:main.1,p:69789,tN:MainThread] Sending reconfigure_watcher control task. +galaxy.util.monitors DEBUG 2024-02-23 12:56:58,040 [pN:main.1,p:69789,tN:MainThread] Joining monitor thread +galaxy.jobs.handler INFO 2024-02-23 12:56:58,041 [pN:main.1,p:69789,tN:MainThread] sending stop signal to worker thread +galaxy.util.monitors DEBUG 2024-02-23 12:56:58,041 [pN:main.1,p:69789,tN:MainThread] Joining monitor thread +galaxy.jobs.handler INFO 2024-02-23 12:56:58,041 [pN:main.1,p:69789,tN:MainThread] job handler queue stopped +galaxy.jobs.runners INFO 2024-02-23 12:56:58,041 [pN:main.1,p:69789,tN:MainThread] LocalRunner: Sending stop signal to 4 job worker threads +galaxy.jobs.runners INFO 2024-02-23 12:56:58,042 [pN:main.1,p:69789,tN:MainThread] Waiting up to 30 seconds for job worker threads to shutdown... +galaxy.jobs.runners DEBUG 2024-02-23 12:56:58,042 [pN:main.1,p:69789,tN:MainThread] Job worker thread terminated: LocalRunner.work_thread-0 +galaxy.jobs.runners INFO 2024-02-23 12:56:58,042 [pN:main.1,p:69789,tN:MainThread] All job worker threads shutdown cleanly +galaxy.jobs.handler INFO 2024-02-23 12:56:58,043 [pN:main.1,p:69789,tN:MainThread] sending stop signal to worker thread +galaxy.util.monitors DEBUG 2024-02-23 12:56:58,043 [pN:main.1,p:69789,tN:MainThread] Joining monitor thread +galaxy.jobs.handler INFO 2024-02-23 12:56:58,043 [pN:main.1,p:69789,tN:MainThread] job handler stop queue stopped +galaxy.jobs DEBUG 2024-02-23 13:02:33,456 [pN:main,p:71805,tN:MainThread] Loading job configuration from /scratch/rico/galaxytools/tools/ncbi_fcs_adaptor/planemo_job_conf.xml +galaxy.jobs DEBUG 2024-02-23 13:02:33,456 [pN:main,p:71805,tN:MainThread] Read job configuration from file: /scratch/rico/galaxytools/tools/ncbi_fcs_adaptor/planemo_job_conf.xml +galaxy.web_stack.handlers INFO 2024-02-23 13:02:33,475 [pN:main,p:71805,tN:MainThread] JobConfiguration: No job handler assignment method is set, defaulting to 'HANDLER_ASSIGNMENT_METHODS.DB_SKIP_LOCKED', set the `assign_with` attribute on <handlers> to override the default +galaxy.jobs INFO 2024-02-23 13:02:33,475 [pN:main,p:71805,tN:MainThread] Job handler assignment methods set to: db-skip-locked +galaxy.web_stack.handlers DEBUG 2024-02-23 13:02:33,475 [pN:main,p:71805,tN:MainThread] default set to child with id or tag 'docker_local' +galaxy.jobs DEBUG 2024-02-23 13:02:33,475 [pN:main,p:71805,tN:MainThread] Done loading job configuration +galaxy.security.vault WARNING 2024-02-23 13:02:33,598 [pN:main,p:71805,tN:MainThread] No vault configured. We recommend defining the vault_config_file setting in galaxy.yml +galaxy.datatypes.registry DEBUG 2024-02-23 13:02:33,625 [pN:main,p:71805,tN:MainThread] Loading datatypes from /scratch/rico/galaxy/lib/galaxy/config/sample/datatypes_conf.xml.sample +galaxy.datatypes.registry DEBUG 2024-02-23 13:02:33,625 [pN:main,p:71805,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension source.h. +galaxy.datatypes.registry DEBUG 2024-02-23 13:02:33,626 [pN:main,p:71805,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension source.c. +galaxy.datatypes.registry DEBUG 2024-02-23 13:02:33,626 [pN:main,p:71805,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension source.cpp. +galaxy.datatypes.registry DEBUG 2024-02-23 13:02:33,626 [pN:main,p:71805,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension source.py. +galaxy.datatypes.registry DEBUG 2024-02-23 13:02:33,626 [pN:main,p:71805,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension source.go. +galaxy.datatypes.registry DEBUG 2024-02-23 13:02:33,626 [pN:main,p:71805,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension source.rs. +galaxy.datatypes.registry DEBUG 2024-02-23 13:02:33,626 [pN:main,p:71805,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension source.cs. +galaxy.datatypes.registry DEBUG 2024-02-23 13:02:33,626 [pN:main,p:71805,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:Binary from the datatype registry for extension hep.root. +galaxy.datatypes.registry DEBUG 2024-02-23 13:02:33,626 [pN:main,p:71805,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:JP2 from the datatype registry for extension jp2. +galaxy.datatypes.registry DEBUG 2024-02-23 13:02:33,626 [pN:main,p:71805,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:Ab1 from the datatype registry for extension ab1. +galaxy.datatypes.registry DEBUG 2024-02-23 13:02:33,627 [pN:main,p:71805,tN:MainThread] Retrieved datatype module galaxy.datatypes.assembly:Amos from the datatype registry for extension afg. +galaxy.datatypes.registry DEBUG 2024-02-23 13:02:33,627 [pN:main,p:71805,tN:MainThread] Retrieved datatype module galaxy.datatypes.goldenpath:GoldenPath from the datatype registry for extension agp. +galaxy.datatypes.registry DEBUG 2024-02-23 13:02:33,628 [pN:main,p:71805,tN:MainThread] Retrieved datatype module galaxy.datatypes.anvio:AnvioComposite from the datatype registry for extension anvio_cog_profile. +galaxy.datatypes.registry DEBUG 2024-02-23 13:02:33,628 [pN:main,p:71805,tN:MainThread] Retrieved datatype module galaxy.datatypes.anvio:AnvioComposite from the datatype registry for extension anvio_composite. +galaxy.datatypes.registry DEBUG 2024-02-23 13:02:33,628 [pN:main,p:71805,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:Data from the datatype registry for extension anvio_classifier. +galaxy.datatypes.registry DEBUG 2024-02-23 13:02:33,628 [pN:main,p:71805,tN:MainThread] Retrieved datatype module galaxy.datatypes.anvio:AnvioContigsDB from the datatype registry for extension anvio_contigs_db. +galaxy.datatypes.registry DEBUG 2024-02-23 13:02:33,628 [pN:main,p:71805,tN:MainThread] Retrieved datatype module galaxy.datatypes.anvio:AnvioDB from the datatype registry for extension anvio_db. +galaxy.datatypes.registry DEBUG 2024-02-23 13:02:33,628 [pN:main,p:71805,tN:MainThread] Retrieved datatype module galaxy.datatypes.anvio:AnvioGenomesDB from the datatype registry for extension anvio_genomes_db. +galaxy.datatypes.registry DEBUG 2024-02-23 13:02:33,628 [pN:main,p:71805,tN:MainThread] Retrieved datatype module galaxy.datatypes.anvio:AnvioPanDB from the datatype registry for extension anvio_pan_db. +galaxy.datatypes.registry DEBUG 2024-02-23 13:02:33,628 [pN:main,p:71805,tN:MainThread] Retrieved datatype module galaxy.datatypes.anvio:AnvioComposite from the datatype registry for extension anvio_pfam_profile. +galaxy.datatypes.registry DEBUG 2024-02-23 13:02:33,628 [pN:main,p:71805,tN:MainThread] Retrieved datatype module galaxy.datatypes.anvio:AnvioProfileDB from the datatype registry for extension anvio_profile_db. +galaxy.datatypes.registry DEBUG 2024-02-23 13:02:33,628 [pN:main,p:71805,tN:MainThread] Retrieved datatype module galaxy.datatypes.anvio:AnvioSamplesDB from the datatype registry for extension anvio_samples_db. +galaxy.datatypes.registry DEBUG 2024-02-23 13:02:33,628 [pN:main,p:71805,tN:MainThread] Retrieved datatype module galaxy.datatypes.text:Json from the datatype registry for extension anvio_state. +galaxy.datatypes.registry DEBUG 2024-02-23 13:02:33,628 [pN:main,p:71805,tN:MainThread] Retrieved datatype module galaxy.datatypes.anvio:AnvioStructureDB from the datatype registry for extension anvio_structure_db. +galaxy.datatypes.registry DEBUG 2024-02-23 13:02:33,628 [pN:main,p:71805,tN:MainThread] Retrieved datatype module galaxy.datatypes.tabular:TSV from the datatype registry for extension anvio_variability. +galaxy.datatypes.registry DEBUG 2024-02-23 13:02:33,629 [pN:main,p:71805,tN:MainThread] Retrieved datatype module galaxy.datatypes.text:Arff from the datatype registry for extension arff. +galaxy.datatypes.registry DEBUG 2024-02-23 13:02:33,629 [pN:main,p:71805,tN:MainThread] Retrieved datatype module galaxy.datatypes.text:Paf from the datatype registry for extension paf. +galaxy.datatypes.registry DEBUG 2024-02-23 13:02:33,629 [pN:main,p:71805,tN:MainThread] Retrieved datatype module galaxy.datatypes.text:Gfa1 from the datatype registry for extension gfa1. +galaxy.datatypes.registry DEBUG 2024-02-23 13:02:33,629 [pN:main,p:71805,tN:MainThread] Retrieved datatype module galaxy.datatypes.text:Gfa2 from the datatype registry for extension gfa2. +galaxy.datatypes.registry DEBUG 2024-02-23 13:02:33,629 [pN:main,p:71805,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:GenericAsn1 from the datatype registry for extension asn1. +galaxy.datatypes.registry DEBUG 2024-02-23 13:02:33,629 [pN:main,p:71805,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:GenericAsn1Binary from the datatype registry for extension asn1-binary. +galaxy.datatypes.registry DEBUG 2024-02-23 13:02:33,629 [pN:main,p:71805,tN:MainThread] Retrieved datatype module galaxy.datatypes.sequence:Axt from the datatype registry for extension axt. +galaxy.datatypes.registry DEBUG 2024-02-23 13:02:33,629 [pN:main,p:71805,tN:MainThread] Retrieved datatype module galaxy.datatypes.tabular:FeatureLocationIndex from the datatype registry for extension fli. +galaxy.datatypes.registry DEBUG 2024-02-23 13:02:33,629 [pN:main,p:71805,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:Bam from the datatype registry for extension bam. +galaxy.datatypes.registry DEBUG 2024-02-23 13:02:33,629 [pN:main,p:71805,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:Binary from the datatype registry for extension bai. +galaxy.datatypes.registry DEBUG 2024-02-23 13:02:33,629 [pN:main,p:71805,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:BamInputSorted from the datatype registry for extension qname_input_sorted.bam. +galaxy.datatypes.registry DEBUG 2024-02-23 13:02:33,629 [pN:main,p:71805,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:BamQuerynameSorted from the datatype registry for extension qname_sorted.bam. +galaxy.datatypes.registry DEBUG 2024-02-23 13:02:33,629 [pN:main,p:71805,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:BamNative from the datatype registry for extension unsorted.bam. +galaxy.datatypes.registry DEBUG 2024-02-23 13:02:33,629 [pN:main,p:71805,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:ProBam from the datatype registry for extension probam. +galaxy.datatypes.registry DEBUG 2024-02-23 13:02:33,630 [pN:main,p:71805,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:CRAM from the datatype registry for extension cram. +galaxy.datatypes.registry DEBUG 2024-02-23 13:02:33,630 [pN:main,p:71805,tN:MainThread] Retrieved datatype module galaxy.datatypes.interval:Bed from the datatype registry for extension bed. +galaxy.datatypes.registry DEBUG 2024-02-23 13:02:33,630 [pN:main,p:71805,tN:MainThread] Retrieved datatype module galaxy.datatypes.interval:BedGraph from the datatype registry for extension bedgraph. +galaxy.datatypes.registry DEBUG 2024-02-23 13:02:33,630 [pN:main,p:71805,tN:MainThread] Retrieved datatype module galaxy.datatypes.interval:BedStrict from the datatype registry for extension bedstrict. +galaxy.datatypes.registry DEBUG 2024-02-23 13:02:33,630 [pN:main,p:71805,tN:MainThread] Retrieved datatype module galaxy.datatypes.interval:Bed6 from the datatype registry for extension bed6. +galaxy.datatypes.registry DEBUG 2024-02-23 13:02:33,630 [pN:main,p:71805,tN:MainThread] Retrieved datatype module galaxy.datatypes.interval:Bed12 from the datatype registry for extension bed12. +galaxy.datatypes.registry DEBUG 2024-02-23 13:02:33,630 [pN:main,p:71805,tN:MainThread] Retrieved datatype module galaxy.datatypes.interval:ProBed from the datatype registry for extension probed. +galaxy.datatypes.registry DEBUG 2024-02-23 13:02:33,630 [pN:main,p:71805,tN:MainThread] Retrieved datatype module galaxy.datatypes.chrominfo:ChromInfo from the datatype registry for extension len. +galaxy.datatypes.registry DEBUG 2024-02-23 13:02:33,630 [pN:main,p:71805,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:DAA from the datatype registry for extension daa. +galaxy.datatypes.registry DEBUG 2024-02-23 13:02:33,630 [pN:main,p:71805,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:RMA6 from the datatype registry for extension rma6. +galaxy.datatypes.registry DEBUG 2024-02-23 13:02:33,630 [pN:main,p:71805,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:DMND from the datatype registry for extension dmnd. +galaxy.datatypes.registry DEBUG 2024-02-23 13:02:33,631 [pN:main,p:71805,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:Parquet from the datatype registry for extension parquet. +galaxy.datatypes.registry DEBUG 2024-02-23 13:02:33,631 [pN:main,p:71805,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:Idat from the datatype registry for extension idat. +galaxy.datatypes.registry DEBUG 2024-02-23 13:02:33,631 [pN:main,p:71805,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:BigBed from the datatype registry for extension bigbed. +galaxy.datatypes.registry DEBUG 2024-02-23 13:02:33,631 [pN:main,p:71805,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:BigWig from the datatype registry for extension bigwig. +galaxy.datatypes.registry DEBUG 2024-02-23 13:02:33,631 [pN:main,p:71805,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:Binary from the datatype registry for extension cxb. +galaxy.datatypes.registry DEBUG 2024-02-23 13:02:33,631 [pN:main,p:71805,tN:MainThread] Retrieved datatype module galaxy.datatypes.interval:ChromatinInteractions from the datatype registry for extension chrint. +galaxy.datatypes.registry DEBUG 2024-02-23 13:02:33,631 [pN:main,p:71805,tN:MainThread] Retrieved datatype module galaxy.datatypes.tabular:CSV from the datatype registry for extension csv. +galaxy.datatypes.registry DEBUG 2024-02-23 13:02:33,631 [pN:main,p:71805,tN:MainThread] Retrieved datatype module galaxy.datatypes.tabular:TSV from the datatype registry for extension tsv. +galaxy.datatypes.registry DEBUG 2024-02-23 13:02:33,631 [pN:main,p:71805,tN:MainThread] Retrieved datatype module galaxy.datatypes.tabular:TSV from the datatype registry for extension intermine_tabular. +galaxy.datatypes.registry DEBUG 2024-02-23 13:02:33,631 [pN:main,p:71805,tN:MainThread] Retrieved datatype module galaxy.datatypes.interval:CustomTrack from the datatype registry for extension customtrack. +galaxy.datatypes.registry DEBUG 2024-02-23 13:02:33,631 [pN:main,p:71805,tN:MainThread] Retrieved datatype module galaxy.datatypes.ngsindex:BowtieColorIndex from the datatype registry for extension bowtie_color_index. +galaxy.datatypes.registry DEBUG 2024-02-23 13:02:33,632 [pN:main,p:71805,tN:MainThread] Retrieved datatype module galaxy.datatypes.ngsindex:BowtieBaseIndex from the datatype registry for extension bowtie_base_index. +galaxy.datatypes.registry DEBUG 2024-02-23 13:02:33,632 [pN:main,p:71805,tN:MainThread] Retrieved datatype module galaxy.datatypes.sequence:csFasta from the datatype registry for extension csfasta. +galaxy.datatypes.registry DEBUG 2024-02-23 13:02:33,632 [pN:main,p:71805,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:Data from the datatype registry for extension data. +galaxy.datatypes.registry DEBUG 2024-02-23 13:02:33,632 [pN:main,p:71805,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:Binary from the datatype registry for extension gz. +galaxy.datatypes.registry DEBUG 2024-02-23 13:02:33,632 [pN:main,p:71805,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:Binary from the datatype registry for extension binary. +galaxy.datatypes.registry DEBUG 2024-02-23 13:02:33,632 [pN:main,p:71805,tN:MainThread] Retrieved datatype module galaxy.datatypes.text:Json from the datatype registry for extension d3_hierarchy. +galaxy.datatypes.registry DEBUG 2024-02-23 13:02:33,632 [pN:main,p:71805,tN:MainThread] Retrieved datatype module galaxy.datatypes.text:ImgtJson from the datatype registry for extension imgt.json. +galaxy.datatypes.registry DEBUG 2024-02-23 13:02:33,632 [pN:main,p:71805,tN:MainThread] Retrieved datatype module galaxy.datatypes.text:GeoJson from the datatype registry for extension geojson. +galaxy.datatypes.registry DEBUG 2024-02-23 13:02:33,632 [pN:main,p:71805,tN:MainThread] Retrieved datatype module galaxy.datatypes.text:Json from the datatype registry for extension data_manager_json. +galaxy.datatypes.registry DEBUG 2024-02-23 13:02:33,632 [pN:main,p:71805,tN:MainThread] Retrieved datatype module galaxy.datatypes.sequence:DotBracket from the datatype registry for extension dbn. +galaxy.datatypes.registry DEBUG 2024-02-23 13:02:33,632 [pN:main,p:71805,tN:MainThread] Retrieved datatype module galaxy.datatypes.tabular:Tabular from the datatype registry for extension fai. +galaxy.datatypes.registry DEBUG 2024-02-23 13:02:33,632 [pN:main,p:71805,tN:MainThread] Retrieved datatype module galaxy.datatypes.sequence:Fasta from the datatype registry for extension fasta. +galaxy.datatypes.registry DEBUG 2024-02-23 13:02:33,632 [pN:main,p:71805,tN:MainThread] Retrieved datatype module galaxy.datatypes.sequence:Fastg from the datatype registry for extension fastg. +galaxy.datatypes.registry DEBUG 2024-02-23 13:02:33,632 [pN:main,p:71805,tN:MainThread] Retrieved datatype module galaxy.datatypes.sequence:Fastq from the datatype registry for extension fastq. +galaxy.datatypes.registry DEBUG 2024-02-23 13:02:33,633 [pN:main,p:71805,tN:MainThread] Retrieved datatype module galaxy.datatypes.sequence:FastqSanger from the datatype registry for extension fastqsanger. +galaxy.datatypes.registry DEBUG 2024-02-23 13:02:33,633 [pN:main,p:71805,tN:MainThread] Retrieved datatype module galaxy.datatypes.sequence:FastqSolexa from the datatype registry for extension fastqsolexa. +galaxy.datatypes.registry DEBUG 2024-02-23 13:02:33,633 [pN:main,p:71805,tN:MainThread] Retrieved datatype module galaxy.datatypes.sequence:FastqCSSanger from the datatype registry for extension fastqcssanger. +galaxy.datatypes.registry DEBUG 2024-02-23 13:02:33,633 [pN:main,p:71805,tN:MainThread] Retrieved datatype module galaxy.datatypes.sequence:FastqIllumina from the datatype registry for extension fastqillumina. +galaxy.datatypes.registry DEBUG 2024-02-23 13:02:33,633 [pN:main,p:71805,tN:MainThread] Retrieved datatype module galaxy.datatypes.sequence:SequenceSplitLocations from the datatype registry for extension fqtoc. +galaxy.datatypes.registry DEBUG 2024-02-23 13:02:33,633 [pN:main,p:71805,tN:MainThread] Retrieved datatype module galaxy.datatypes.tabular:Eland from the datatype registry for extension eland. +galaxy.datatypes.registry DEBUG 2024-02-23 13:02:33,633 [pN:main,p:71805,tN:MainThread] Retrieved datatype module galaxy.datatypes.tabular:ElandMulti from the datatype registry for extension elandmulti. +galaxy.datatypes.registry DEBUG 2024-02-23 13:02:33,633 [pN:main,p:71805,tN:MainThread] Retrieved datatype module galaxy.datatypes.tracks:GeneTrack from the datatype registry for extension genetrack. +galaxy.datatypes.registry DEBUG 2024-02-23 13:02:33,634 [pN:main,p:71805,tN:MainThread] Retrieved datatype module galaxy.datatypes.interval:Gff from the datatype registry for extension gff. +galaxy.datatypes.registry DEBUG 2024-02-23 13:02:33,634 [pN:main,p:71805,tN:MainThread] Retrieved datatype module galaxy.datatypes.interval:Gff3 from the datatype registry for extension gff3. +galaxy.datatypes.registry DEBUG 2024-02-23 13:02:33,634 [pN:main,p:71805,tN:MainThread] Retrieved datatype module galaxy.datatypes.images:Gif from the datatype registry for extension gif. +galaxy.datatypes.registry DEBUG 2024-02-23 13:02:33,634 [pN:main,p:71805,tN:MainThread] Retrieved datatype module galaxy.datatypes.images:Gmaj from the datatype registry for extension gmaj.zip. +galaxy.datatypes.registry DEBUG 2024-02-23 13:02:33,634 [pN:main,p:71805,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension graph_dot. +galaxy.datatypes.registry DEBUG 2024-02-23 13:02:33,634 [pN:main,p:71805,tN:MainThread] Retrieved datatype module galaxy.datatypes.interval:Gtf from the datatype registry for extension gtf. +galaxy.datatypes.registry DEBUG 2024-02-23 13:02:33,634 [pN:main,p:71805,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:Binary from the datatype registry for extension toolshed.gz. +galaxy.datatypes.registry DEBUG 2024-02-23 13:02:33,634 [pN:main,p:71805,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:Binary from the datatype registry for extension hdf4. +galaxy.datatypes.registry DEBUG 2024-02-23 13:02:33,634 [pN:main,p:71805,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:H5 from the datatype registry for extension h5. +galaxy.datatypes.registry DEBUG 2024-02-23 13:02:33,634 [pN:main,p:71805,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:H5 from the datatype registry for extension scool. +galaxy.datatypes.registry DEBUG 2024-02-23 13:02:33,634 [pN:main,p:71805,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:Grib from the datatype registry for extension grib. +galaxy.datatypes.registry DEBUG 2024-02-23 13:02:33,634 [pN:main,p:71805,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:Loom from the datatype registry for extension loom. +galaxy.datatypes.registry DEBUG 2024-02-23 13:02:33,635 [pN:main,p:71805,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:Anndata from the datatype registry for extension h5ad. +galaxy.datatypes.registry DEBUG 2024-02-23 13:02:33,635 [pN:main,p:71805,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:Visium from the datatype registry for extension visium.tar.gz. +galaxy.datatypes.registry DEBUG 2024-02-23 13:02:33,635 [pN:main,p:71805,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:H5 from the datatype registry for extension mz5. +galaxy.datatypes.registry DEBUG 2024-02-23 13:02:33,635 [pN:main,p:71805,tN:MainThread] Retrieved datatype module galaxy.datatypes.text:Json from the datatype registry for extension hyphy_results.json. +galaxy.datatypes.registry DEBUG 2024-02-23 13:02:33,635 [pN:main,p:71805,tN:MainThread] Retrieved datatype module galaxy.datatypes.text:Json from the datatype registry for extension hivtrace. +galaxy.datatypes.registry DEBUG 2024-02-23 13:02:33,635 [pN:main,p:71805,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:Cool from the datatype registry for extension cool. +galaxy.datatypes.registry DEBUG 2024-02-23 13:02:33,635 [pN:main,p:71805,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:MCool from the datatype registry for extension mcool. +galaxy.datatypes.registry DEBUG 2024-02-23 13:02:33,635 [pN:main,p:71805,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:H5MLM from the datatype registry for extension h5mlm. +galaxy.datatypes.registry DEBUG 2024-02-23 13:02:33,635 [pN:main,p:71805,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:LudwigModel from the datatype registry for extension ludwig_model. +galaxy.datatypes.registry DEBUG 2024-02-23 13:02:33,635 [pN:main,p:71805,tN:MainThread] Retrieved datatype module galaxy.datatypes.text:Html from the datatype registry for extension html. +galaxy.datatypes.registry DEBUG 2024-02-23 13:02:33,635 [pN:main,p:71805,tN:MainThread] Retrieved datatype module galaxy.datatypes.text:Html from the datatype registry for extension ludwig_report.html. +galaxy.datatypes.registry DEBUG 2024-02-23 13:02:33,635 [pN:main,p:71805,tN:MainThread] Retrieved datatype module galaxy.datatypes.interval:Interval from the datatype registry for extension interval. +galaxy.datatypes.registry DEBUG 2024-02-23 13:02:33,635 [pN:main,p:71805,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:Binary from the datatype registry for extension jellyfish. +galaxy.datatypes.registry DEBUG 2024-02-23 13:02:33,635 [pN:main,p:71805,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:Binary from the datatype registry for extension ktab. +galaxy.datatypes.registry DEBUG 2024-02-23 13:02:33,636 [pN:main,p:71805,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:Binary from the datatype registry for extension hist. +galaxy.datatypes.registry DEBUG 2024-02-23 13:02:33,636 [pN:main,p:71805,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:Binary from the datatype registry for extension prof. +galaxy.datatypes.registry DEBUG 2024-02-23 13:02:33,688 [pN:main,p:71805,tN:MainThread] Retrieved datatype module galaxy.datatypes.isa:IsaTab from the datatype registry for extension isa-tab. +galaxy.datatypes.registry DEBUG 2024-02-23 13:02:33,688 [pN:main,p:71805,tN:MainThread] Retrieved datatype module galaxy.datatypes.isa:IsaJson from the datatype registry for extension isa-json. +galaxy.datatypes.registry DEBUG 2024-02-23 13:02:33,688 [pN:main,p:71805,tN:MainThread] Retrieved datatype module galaxy.datatypes.tabular:Tabular from the datatype registry for extension picard_interval_list. +galaxy.datatypes.registry DEBUG 2024-02-23 13:02:33,688 [pN:main,p:71805,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension gatk_interval. +galaxy.datatypes.registry DEBUG 2024-02-23 13:02:33,689 [pN:main,p:71805,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension gatk_report. +galaxy.datatypes.registry DEBUG 2024-02-23 13:02:33,689 [pN:main,p:71805,tN:MainThread] Retrieved datatype module galaxy.datatypes.tabular:Tabular from the datatype registry for extension gatk_dbsnp. +galaxy.datatypes.registry DEBUG 2024-02-23 13:02:33,689 [pN:main,p:71805,tN:MainThread] Retrieved datatype module galaxy.datatypes.tabular:Tabular from the datatype registry for extension gatk_tranche. +galaxy.datatypes.registry DEBUG 2024-02-23 13:02:33,689 [pN:main,p:71805,tN:MainThread] Retrieved datatype module galaxy.datatypes.tabular:Tabular from the datatype registry for extension gatk_recal. +galaxy.datatypes.registry DEBUG 2024-02-23 13:02:33,689 [pN:main,p:71805,tN:MainThread] Retrieved datatype module galaxy.datatypes.tabular:Tabular from the datatype registry for extension cnn. +galaxy.datatypes.registry DEBUG 2024-02-23 13:02:33,689 [pN:main,p:71805,tN:MainThread] Retrieved datatype module galaxy.datatypes.tabular:Tabular from the datatype registry for extension cns. +galaxy.datatypes.registry DEBUG 2024-02-23 13:02:33,689 [pN:main,p:71805,tN:MainThread] Retrieved datatype module galaxy.datatypes.tabular:Tabular from the datatype registry for extension cnr. +galaxy.datatypes.registry DEBUG 2024-02-23 13:02:33,689 [pN:main,p:71805,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension hhr. +galaxy.datatypes.registry DEBUG 2024-02-23 13:02:33,689 [pN:main,p:71805,tN:MainThread] Retrieved datatype module galaxy.datatypes.images:Jpg from the datatype registry for extension jpg. +galaxy.datatypes.registry DEBUG 2024-02-23 13:02:33,690 [pN:main,p:71805,tN:MainThread] Retrieved datatype module galaxy.datatypes.images:Tiff from the datatype registry for extension tiff. +galaxy.datatypes.registry DEBUG 2024-02-23 13:02:33,690 [pN:main,p:71805,tN:MainThread] Retrieved datatype module galaxy.datatypes.images:Tiff from the datatype registry for extension tf2. +galaxy.datatypes.registry DEBUG 2024-02-23 13:02:33,690 [pN:main,p:71805,tN:MainThread] Retrieved datatype module galaxy.datatypes.images:Tiff from the datatype registry for extension tf8. +galaxy.datatypes.registry DEBUG 2024-02-23 13:02:33,690 [pN:main,p:71805,tN:MainThread] Retrieved datatype module galaxy.datatypes.images:Tiff from the datatype registry for extension btf. +galaxy.datatypes.registry DEBUG 2024-02-23 13:02:33,690 [pN:main,p:71805,tN:MainThread] Retrieved datatype module galaxy.datatypes.images:Tiff from the datatype registry for extension tif. +galaxy.datatypes.registry DEBUG 2024-02-23 13:02:33,690 [pN:main,p:71805,tN:MainThread] Retrieved datatype module galaxy.datatypes.images:Tiff from the datatype registry for extension svs. +galaxy.datatypes.registry DEBUG 2024-02-23 13:02:33,690 [pN:main,p:71805,tN:MainThread] Retrieved datatype module galaxy.datatypes.images:Tiff from the datatype registry for extension scn. +galaxy.datatypes.registry DEBUG 2024-02-23 13:02:33,690 [pN:main,p:71805,tN:MainThread] Retrieved datatype module galaxy.datatypes.images:Tiff from the datatype registry for extension bif. +galaxy.datatypes.registry DEBUG 2024-02-23 13:02:33,690 [pN:main,p:71805,tN:MainThread] Retrieved datatype module galaxy.datatypes.images:OMETiff from the datatype registry for extension ome.tiff. +galaxy.datatypes.registry DEBUG 2024-02-23 13:02:33,690 [pN:main,p:71805,tN:MainThread] Retrieved datatype module galaxy.datatypes.images:Hamamatsu from the datatype registry for extension vms. +galaxy.datatypes.registry DEBUG 2024-02-23 13:02:33,690 [pN:main,p:71805,tN:MainThread] Retrieved datatype module galaxy.datatypes.images:Hamamatsu from the datatype registry for extension vmu. +galaxy.datatypes.registry DEBUG 2024-02-23 13:02:33,690 [pN:main,p:71805,tN:MainThread] Retrieved datatype module galaxy.datatypes.images:Hamamatsu from the datatype registry for extension ndpi. +galaxy.datatypes.registry DEBUG 2024-02-23 13:02:33,690 [pN:main,p:71805,tN:MainThread] Retrieved datatype module galaxy.datatypes.images:Mirax from the datatype registry for extension mrxs. +galaxy.datatypes.registry DEBUG 2024-02-23 13:02:33,690 [pN:main,p:71805,tN:MainThread] Retrieved datatype module galaxy.datatypes.images:Sakura from the datatype registry for extension svslide. +galaxy.datatypes.registry DEBUG 2024-02-23 13:02:33,690 [pN:main,p:71805,tN:MainThread] Retrieved datatype module galaxy.datatypes.images:Bmp from the datatype registry for extension bmp. +galaxy.datatypes.registry DEBUG 2024-02-23 13:02:33,691 [pN:main,p:71805,tN:MainThread] Retrieved datatype module galaxy.datatypes.images:Im from the datatype registry for extension im. +galaxy.datatypes.registry DEBUG 2024-02-23 13:02:33,691 [pN:main,p:71805,tN:MainThread] Retrieved datatype module galaxy.datatypes.images:Pcd from the datatype registry for extension pcd. +galaxy.datatypes.registry DEBUG 2024-02-23 13:02:33,691 [pN:main,p:71805,tN:MainThread] Retrieved datatype module galaxy.datatypes.images:Pcx from the datatype registry for extension pcx. +galaxy.datatypes.registry DEBUG 2024-02-23 13:02:33,691 [pN:main,p:71805,tN:MainThread] Retrieved datatype module galaxy.datatypes.images:Ppm from the datatype registry for extension ppm. +galaxy.datatypes.registry DEBUG 2024-02-23 13:02:33,691 [pN:main,p:71805,tN:MainThread] Retrieved datatype module galaxy.datatypes.images:Psd from the datatype registry for extension psd. +galaxy.datatypes.registry DEBUG 2024-02-23 13:02:33,691 [pN:main,p:71805,tN:MainThread] Retrieved datatype module galaxy.datatypes.images:Xbm from the datatype registry for extension xbm. +galaxy.datatypes.registry DEBUG 2024-02-23 13:02:33,691 [pN:main,p:71805,tN:MainThread] Retrieved datatype module galaxy.datatypes.images:Xpm from the datatype registry for extension xpm. +galaxy.datatypes.registry DEBUG 2024-02-23 13:02:33,691 [pN:main,p:71805,tN:MainThread] Retrieved datatype module galaxy.datatypes.images:Rgb from the datatype registry for extension rgb. +galaxy.datatypes.registry DEBUG 2024-02-23 13:02:33,691 [pN:main,p:71805,tN:MainThread] Retrieved datatype module galaxy.datatypes.images:Pbm from the datatype registry for extension pbm. +galaxy.datatypes.registry DEBUG 2024-02-23 13:02:33,691 [pN:main,p:71805,tN:MainThread] Retrieved datatype module galaxy.datatypes.images:Pgm from the datatype registry for extension pgm. +galaxy.datatypes.registry DEBUG 2024-02-23 13:02:33,691 [pN:main,p:71805,tN:MainThread] Retrieved datatype module galaxy.datatypes.images:Nrrd from the datatype registry for extension nrrd. +galaxy.datatypes.registry DEBUG 2024-02-23 13:02:33,691 [pN:main,p:71805,tN:MainThread] Retrieved datatype module galaxy.datatypes.images:Nrrd from the datatype registry for extension nhdr. +galaxy.datatypes.registry DEBUG 2024-02-23 13:02:33,691 [pN:main,p:71805,tN:MainThread] Retrieved datatype module galaxy.datatypes.sequence:RNADotPlotMatrix from the datatype registry for extension rna_eps. +galaxy.datatypes.registry DEBUG 2024-02-23 13:02:33,692 [pN:main,p:71805,tN:MainThread] Retrieved datatype module galaxy.datatypes.qiime2:QIIME2Artifact from the datatype registry for extension qza. +galaxy.datatypes.registry DEBUG 2024-02-23 13:02:33,692 [pN:main,p:71805,tN:MainThread] Retrieved datatype module galaxy.datatypes.qiime2:QIIME2Visualization from the datatype registry for extension qzv. +galaxy.datatypes.registry DEBUG 2024-02-23 13:02:33,692 [pN:main,p:71805,tN:MainThread] Retrieved datatype module galaxy.datatypes.qiime2:QIIME2Metadata from the datatype registry for extension qiime2.tabular. +galaxy.datatypes.registry DEBUG 2024-02-23 13:02:33,692 [pN:main,p:71805,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:CompressedZipArchive from the datatype registry for extension zip. +galaxy.datatypes.registry DEBUG 2024-02-23 13:02:33,692 [pN:main,p:71805,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:CompressedZipArchive from the datatype registry for extension ncbi_genome_dataset.zip. +galaxy.datatypes.registry DEBUG 2024-02-23 13:02:33,692 [pN:main,p:71805,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:CompressedArchive from the datatype registry for extension tar. +galaxy.datatypes.registry DEBUG 2024-02-23 13:02:33,692 [pN:main,p:71805,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:Directory from the datatype registry for extension directory. +galaxy.datatypes.registry DEBUG 2024-02-23 13:02:33,692 [pN:main,p:71805,tN:MainThread] Retrieved datatype module galaxy.datatypes.text:Yaml from the datatype registry for extension yaml. +galaxy.datatypes.registry DEBUG 2024-02-23 13:02:33,692 [pN:main,p:71805,tN:MainThread] Retrieved datatype module galaxy.datatypes.tabular:Tabular from the datatype registry for extension mrm. +galaxy.datatypes.registry DEBUG 2024-02-23 13:02:33,694 [pN:main,p:71805,tN:MainThread] Retrieved datatype module galaxy.datatypes.proteomics:Dta from the datatype registry for extension dta. +galaxy.datatypes.registry DEBUG 2024-02-23 13:02:33,694 [pN:main,p:71805,tN:MainThread] Retrieved datatype module galaxy.datatypes.proteomics:Dta2d from the datatype registry for extension dta2d. +galaxy.datatypes.registry DEBUG 2024-02-23 13:02:33,694 [pN:main,p:71805,tN:MainThread] Retrieved datatype module galaxy.datatypes.proteomics:Edta from the datatype registry for extension edta. +galaxy.datatypes.registry DEBUG 2024-02-23 13:02:33,694 [pN:main,p:71805,tN:MainThread] Retrieved datatype module galaxy.datatypes.proteomics:PepXml from the datatype registry for extension pepxml. +galaxy.datatypes.registry DEBUG 2024-02-23 13:02:33,694 [pN:main,p:71805,tN:MainThread] Retrieved datatype module galaxy.datatypes.proteomics:PepXml from the datatype registry for extension raw_pepxml. +galaxy.datatypes.registry DEBUG 2024-02-23 13:02:33,694 [pN:main,p:71805,tN:MainThread] Retrieved datatype module galaxy.datatypes.proteomics:PepXml from the datatype registry for extension peptideprophet_pepxml. +galaxy.datatypes.registry DEBUG 2024-02-23 13:02:33,694 [pN:main,p:71805,tN:MainThread] Retrieved datatype module galaxy.datatypes.proteomics:PepXml from the datatype registry for extension interprophet_pepxml. +galaxy.datatypes.registry DEBUG 2024-02-23 13:02:33,694 [pN:main,p:71805,tN:MainThread] Retrieved datatype module galaxy.datatypes.proteomics:ProtXML from the datatype registry for extension protxml. +galaxy.datatypes.registry DEBUG 2024-02-23 13:02:33,694 [pN:main,p:71805,tN:MainThread] Retrieved datatype module galaxy.datatypes.proteomics:ParamXml from the datatype registry for extension paramxml. +galaxy.datatypes.registry DEBUG 2024-02-23 13:02:33,694 [pN:main,p:71805,tN:MainThread] Retrieved datatype module galaxy.datatypes.proteomics:Kroenik from the datatype registry for extension kroenik. +galaxy.datatypes.registry DEBUG 2024-02-23 13:02:33,694 [pN:main,p:71805,tN:MainThread] Retrieved datatype module galaxy.datatypes.proteomics:PepList from the datatype registry for extension peplist. +galaxy.datatypes.registry DEBUG 2024-02-23 13:02:33,695 [pN:main,p:71805,tN:MainThread] Retrieved datatype module galaxy.datatypes.proteomics:PSMS from the datatype registry for extension psms. +galaxy.datatypes.registry DEBUG 2024-02-23 13:02:33,695 [pN:main,p:71805,tN:MainThread] Retrieved datatype module galaxy.datatypes.proteomics:PepXmlReport from the datatype registry for extension pepxml.tsv. +galaxy.datatypes.registry DEBUG 2024-02-23 13:02:33,695 [pN:main,p:71805,tN:MainThread] Retrieved datatype module galaxy.datatypes.proteomics:ProtXmlReport from the datatype registry for extension protxml.tsv. +galaxy.datatypes.registry DEBUG 2024-02-23 13:02:33,695 [pN:main,p:71805,tN:MainThread] Retrieved datatype module galaxy.datatypes.proteomics:MascotDat from the datatype registry for extension mascotdat. +galaxy.datatypes.registry DEBUG 2024-02-23 13:02:33,695 [pN:main,p:71805,tN:MainThread] Retrieved datatype module galaxy.datatypes.proteomics:MzIdentML from the datatype registry for extension mzid. +galaxy.datatypes.registry DEBUG 2024-02-23 13:02:33,695 [pN:main,p:71805,tN:MainThread] Retrieved datatype module galaxy.datatypes.proteomics:IdXML from the datatype registry for extension idxml. +galaxy.datatypes.registry DEBUG 2024-02-23 13:02:33,695 [pN:main,p:71805,tN:MainThread] Retrieved datatype module galaxy.datatypes.proteomics:TandemXML from the datatype registry for extension tandem. +galaxy.datatypes.registry DEBUG 2024-02-23 13:02:33,695 [pN:main,p:71805,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension sirius.ms. +galaxy.datatypes.registry DEBUG 2024-02-23 13:02:33,695 [pN:main,p:71805,tN:MainThread] Retrieved datatype module galaxy.datatypes.proteomics:ThermoRAW from the datatype registry for extension thermo.raw. +galaxy.datatypes.registry DEBUG 2024-02-23 13:02:33,695 [pN:main,p:71805,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:BafTar from the datatype registry for extension brukerbaf.d.tar. +galaxy.datatypes.registry DEBUG 2024-02-23 13:02:33,695 [pN:main,p:71805,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:YepTar from the datatype registry for extension agilentbrukeryep.d.tar. +galaxy.datatypes.registry DEBUG 2024-02-23 13:02:33,695 [pN:main,p:71805,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:TdfTar from the datatype registry for extension brukertdf.d.tar. +galaxy.datatypes.registry DEBUG 2024-02-23 13:02:33,695 [pN:main,p:71805,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:MassHunterTar from the datatype registry for extension agilentmasshunter.d.tar. +galaxy.datatypes.registry DEBUG 2024-02-23 13:02:33,695 [pN:main,p:71805,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:MassLynxTar from the datatype registry for extension watersmasslynx.raw.tar. +galaxy.datatypes.registry DEBUG 2024-02-23 13:02:33,695 [pN:main,p:71805,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:WiffTar from the datatype registry for extension wiff.tar. +galaxy.datatypes.registry DEBUG 2024-02-23 13:02:33,695 [pN:main,p:71805,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:Wiff2Tar from the datatype registry for extension wiff2.tar. +galaxy.datatypes.registry DEBUG 2024-02-23 13:02:33,695 [pN:main,p:71805,tN:MainThread] Retrieved datatype module galaxy.datatypes.proteomics:MascotXML from the datatype registry for extension mascotxml. +galaxy.datatypes.registry DEBUG 2024-02-23 13:02:33,696 [pN:main,p:71805,tN:MainThread] Retrieved datatype module galaxy.datatypes.proteomics:MzTab from the datatype registry for extension mztab. +galaxy.datatypes.registry DEBUG 2024-02-23 13:02:33,696 [pN:main,p:71805,tN:MainThread] Retrieved datatype module galaxy.datatypes.proteomics:MzTab2 from the datatype registry for extension mztab2. +galaxy.datatypes.registry DEBUG 2024-02-23 13:02:33,696 [pN:main,p:71805,tN:MainThread] Retrieved datatype module galaxy.datatypes.proteomics:MzML from the datatype registry for extension mzml. +galaxy.datatypes.registry DEBUG 2024-02-23 13:02:33,696 [pN:main,p:71805,tN:MainThread] Retrieved datatype module galaxy.datatypes.proteomics:NmrML from the datatype registry for extension nmrml. +galaxy.datatypes.registry DEBUG 2024-02-23 13:02:33,696 [pN:main,p:71805,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:Meryldb from the datatype registry for extension meryldb. +galaxy.datatypes.registry DEBUG 2024-02-23 13:02:33,696 [pN:main,p:71805,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:Bref3 from the datatype registry for extension bref3. +galaxy.datatypes.registry DEBUG 2024-02-23 13:02:33,696 [pN:main,p:71805,tN:MainThread] Retrieved datatype module galaxy.datatypes.proteomics:Mgf from the datatype registry for extension mgf. +galaxy.datatypes.registry DEBUG 2024-02-23 13:02:33,696 [pN:main,p:71805,tN:MainThread] Retrieved datatype module galaxy.datatypes.proteomics:Wiff from the datatype registry for extension wiff. +galaxy.datatypes.registry DEBUG 2024-02-23 13:02:33,696 [pN:main,p:71805,tN:MainThread] Retrieved datatype module galaxy.datatypes.proteomics:Wiff2 from the datatype registry for extension wiff2. +galaxy.datatypes.registry DEBUG 2024-02-23 13:02:33,696 [pN:main,p:71805,tN:MainThread] Retrieved datatype module galaxy.datatypes.proteomics:MzXML from the datatype registry for extension mzxml. +galaxy.datatypes.registry DEBUG 2024-02-23 13:02:33,696 [pN:main,p:71805,tN:MainThread] Retrieved datatype module galaxy.datatypes.proteomics:MzData from the datatype registry for extension mzdata. +galaxy.datatypes.registry DEBUG 2024-02-23 13:02:33,696 [pN:main,p:71805,tN:MainThread] Retrieved datatype module galaxy.datatypes.proteomics:Ms2 from the datatype registry for extension ms2. +galaxy.datatypes.registry DEBUG 2024-02-23 13:02:33,696 [pN:main,p:71805,tN:MainThread] Retrieved datatype module galaxy.datatypes.proteomics:MzQuantML from the datatype registry for extension mzq. +galaxy.datatypes.registry DEBUG 2024-02-23 13:02:33,696 [pN:main,p:71805,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:SQlite from the datatype registry for extension sqlite. +galaxy.datatypes.registry DEBUG 2024-02-23 13:02:33,696 [pN:main,p:71805,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:MzSQlite from the datatype registry for extension mz.sqlite. +galaxy.datatypes.registry DEBUG 2024-02-23 13:02:33,696 [pN:main,p:71805,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:OSW from the datatype registry for extension osw. +galaxy.datatypes.registry DEBUG 2024-02-23 13:02:33,697 [pN:main,p:71805,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:PQP from the datatype registry for extension pqp. +galaxy.datatypes.registry DEBUG 2024-02-23 13:02:33,697 [pN:main,p:71805,tN:MainThread] Retrieved datatype module galaxy.datatypes.proteomics:TraML from the datatype registry for extension traml. +galaxy.datatypes.registry DEBUG 2024-02-23 13:02:33,697 [pN:main,p:71805,tN:MainThread] Retrieved datatype module galaxy.datatypes.proteomics:TrafoXML from the datatype registry for extension trafoxml. +galaxy.datatypes.registry DEBUG 2024-02-23 13:02:33,697 [pN:main,p:71805,tN:MainThread] Retrieved datatype module galaxy.datatypes.proteomics:FeatureXML from the datatype registry for extension featurexml. +galaxy.datatypes.registry DEBUG 2024-02-23 13:02:33,697 [pN:main,p:71805,tN:MainThread] Retrieved datatype module galaxy.datatypes.proteomics:ConsensusXML from the datatype registry for extension consensusxml. +galaxy.datatypes.registry DEBUG 2024-02-23 13:02:33,697 [pN:main,p:71805,tN:MainThread] Retrieved datatype module galaxy.datatypes.proteomics:UniProtXML from the datatype registry for extension uniprotxml. +galaxy.datatypes.registry DEBUG 2024-02-23 13:02:33,697 [pN:main,p:71805,tN:MainThread] Retrieved datatype module galaxy.datatypes.proteomics:XquestXML from the datatype registry for extension xquest.xml. +galaxy.datatypes.registry DEBUG 2024-02-23 13:02:33,697 [pN:main,p:71805,tN:MainThread] Retrieved datatype module galaxy.datatypes.proteomics:XquestSpecXML from the datatype registry for extension spec.xml. +galaxy.datatypes.registry DEBUG 2024-02-23 13:02:33,697 [pN:main,p:71805,tN:MainThread] Retrieved datatype module galaxy.datatypes.proteomics:QCML from the datatype registry for extension qcml. +galaxy.datatypes.registry DEBUG 2024-02-23 13:02:33,697 [pN:main,p:71805,tN:MainThread] Retrieved datatype module galaxy.datatypes.text:Json from the datatype registry for extension mzqc. +galaxy.datatypes.registry DEBUG 2024-02-23 13:02:33,697 [pN:main,p:71805,tN:MainThread] Retrieved datatype module galaxy.datatypes.proteomics:Msp from the datatype registry for extension msp. +galaxy.datatypes.registry DEBUG 2024-02-23 13:02:33,697 [pN:main,p:71805,tN:MainThread] Retrieved datatype module galaxy.datatypes.proteomics:SPLibNoIndex from the datatype registry for extension splib_noindex. +galaxy.datatypes.registry DEBUG 2024-02-23 13:02:33,697 [pN:main,p:71805,tN:MainThread] Retrieved datatype module galaxy.datatypes.proteomics:SPLib from the datatype registry for extension splib. +galaxy.datatypes.registry DEBUG 2024-02-23 13:02:33,697 [pN:main,p:71805,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:BlibSQlite from the datatype registry for extension blib. +galaxy.datatypes.registry DEBUG 2024-02-23 13:02:33,697 [pN:main,p:71805,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:DlibSQlite from the datatype registry for extension dlib. +galaxy.datatypes.registry DEBUG 2024-02-23 13:02:33,697 [pN:main,p:71805,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:ElibSQlite from the datatype registry for extension elib. +galaxy.datatypes.registry DEBUG 2024-02-23 13:02:33,697 [pN:main,p:71805,tN:MainThread] Retrieved datatype module galaxy.datatypes.proteomics:XHunterAslFormat from the datatype registry for extension hlf. +galaxy.datatypes.registry DEBUG 2024-02-23 13:02:33,698 [pN:main,p:71805,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:IdpDB from the datatype registry for extension idpdb. +galaxy.datatypes.registry DEBUG 2024-02-23 13:02:33,698 [pN:main,p:71805,tN:MainThread] Retrieved datatype module galaxy.datatypes.proteomics:Sf3 from the datatype registry for extension sf3. +galaxy.datatypes.registry DEBUG 2024-02-23 13:02:33,698 [pN:main,p:71805,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:Binary from the datatype registry for extension cps. +galaxy.datatypes.registry DEBUG 2024-02-23 13:02:33,698 [pN:main,p:71805,tN:MainThread] Retrieved datatype module galaxy.datatypes.tabular:ConnectivityTable from the datatype registry for extension ct. +galaxy.datatypes.registry DEBUG 2024-02-23 13:02:33,698 [pN:main,p:71805,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:PostgresqlArchive from the datatype registry for extension postgresql. +galaxy.datatypes.registry DEBUG 2024-02-23 13:02:33,698 [pN:main,p:71805,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:MongoDBArchive from the datatype registry for extension mongodb. +galaxy.datatypes.registry DEBUG 2024-02-23 13:02:33,698 [pN:main,p:71805,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:GeneNoteBook from the datatype registry for extension genenotebook. +galaxy.datatypes.registry DEBUG 2024-02-23 13:02:33,698 [pN:main,p:71805,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:SearchGuiArchive from the datatype registry for extension searchgui_archive. +galaxy.datatypes.registry DEBUG 2024-02-23 13:02:33,698 [pN:main,p:71805,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:Fast5Archive from the datatype registry for extension fast5.tar. +galaxy.datatypes.registry DEBUG 2024-02-23 13:02:33,698 [pN:main,p:71805,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:Fast5ArchiveGz from the datatype registry for extension fast5.tar.gz. +galaxy.datatypes.registry DEBUG 2024-02-23 13:02:33,698 [pN:main,p:71805,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:Fast5ArchiveBz2 from the datatype registry for extension fast5.tar.bz2. +galaxy.datatypes.registry DEBUG 2024-02-23 13:02:33,698 [pN:main,p:71805,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:CompressedArchive from the datatype registry for extension peptideshaker_archive. +galaxy.datatypes.registry DEBUG 2024-02-23 13:02:33,698 [pN:main,p:71805,tN:MainThread] Retrieved datatype module galaxy.datatypes.tabular:Tabular from the datatype registry for extension percin. +galaxy.datatypes.registry DEBUG 2024-02-23 13:02:33,698 [pN:main,p:71805,tN:MainThread] Retrieved datatype module galaxy.datatypes.xml:GenericXml from the datatype registry for extension percout. +galaxy.datatypes.registry DEBUG 2024-02-23 13:02:33,698 [pN:main,p:71805,tN:MainThread] Retrieved datatype module galaxy.datatypes.tabular:Tabular from the datatype registry for extension hardklor. +galaxy.datatypes.registry DEBUG 2024-02-23 13:02:33,699 [pN:main,p:71805,tN:MainThread] Retrieved datatype module galaxy.datatypes.tabular:Tabular from the datatype registry for extension kronik. +galaxy.datatypes.registry DEBUG 2024-02-23 13:02:33,699 [pN:main,p:71805,tN:MainThread] Retrieved datatype module galaxy.datatypes.proteomics:ImzML from the datatype registry for extension imzml. +galaxy.datatypes.registry DEBUG 2024-02-23 13:02:33,699 [pN:main,p:71805,tN:MainThread] Retrieved datatype module galaxy.datatypes.images:Analyze75 from the datatype registry for extension analyze75. +galaxy.datatypes.registry DEBUG 2024-02-23 13:02:33,699 [pN:main,p:71805,tN:MainThread] Retrieved datatype module galaxy.datatypes.images:Nifti1 from the datatype registry for extension nii1. +galaxy.datatypes.registry DEBUG 2024-02-23 13:02:33,699 [pN:main,p:71805,tN:MainThread] Retrieved datatype module galaxy.datatypes.images:Nifti2 from the datatype registry for extension nii2. +galaxy.datatypes.registry DEBUG 2024-02-23 13:02:33,699 [pN:main,p:71805,tN:MainThread] Retrieved datatype module galaxy.datatypes.images:Gifti from the datatype registry for extension gii. +galaxy.datatypes.registry DEBUG 2024-02-23 13:02:33,699 [pN:main,p:71805,tN:MainThread] Retrieved datatype module galaxy.datatypes.images:Tck from the datatype registry for extension tck. +galaxy.datatypes.registry DEBUG 2024-02-23 13:02:33,699 [pN:main,p:71805,tN:MainThread] Retrieved datatype module galaxy.datatypes.images:Trk from the datatype registry for extension trk. +galaxy.datatypes.registry DEBUG 2024-02-23 13:02:33,699 [pN:main,p:71805,tN:MainThread] Retrieved datatype module galaxy.datatypes.images:Mrc2014 from the datatype registry for extension mrc. +galaxy.datatypes.registry DEBUG 2024-02-23 13:02:33,699 [pN:main,p:71805,tN:MainThread] Retrieved datatype module galaxy.datatypes.images:Star from the datatype registry for extension star. +galaxy.datatypes.registry DEBUG 2024-02-23 13:02:33,699 [pN:main,p:71805,tN:MainThread] Retrieved datatype module galaxy.datatypes.proteomics:PEFF from the datatype registry for extension peff. +galaxy.datatypes.registry DEBUG 2024-02-23 13:02:33,699 [pN:main,p:71805,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension toml. +galaxy.datatypes.registry DEBUG 2024-02-23 13:02:33,700 [pN:main,p:71805,tN:MainThread] Retrieved datatype module galaxy.datatypes.flow:FCS from the datatype registry for extension fcs. +galaxy.datatypes.registry DEBUG 2024-02-23 13:02:33,700 [pN:main,p:71805,tN:MainThread] Retrieved datatype module galaxy.datatypes.tabular:Tabular from the datatype registry for extension flowtext. +galaxy.datatypes.registry DEBUG 2024-02-23 13:02:33,700 [pN:main,p:71805,tN:MainThread] Retrieved datatype module galaxy.datatypes.tabular:Tabular from the datatype registry for extension flowclr. +galaxy.datatypes.registry DEBUG 2024-02-23 13:02:33,700 [pN:main,p:71805,tN:MainThread] Retrieved datatype module galaxy.datatypes.tabular:Tabular from the datatype registry for extension flowmfi. +galaxy.datatypes.registry DEBUG 2024-02-23 13:02:33,700 [pN:main,p:71805,tN:MainThread] Retrieved datatype module galaxy.datatypes.tabular:Tabular from the datatype registry for extension flowstat1. +galaxy.datatypes.registry DEBUG 2024-02-23 13:02:33,700 [pN:main,p:71805,tN:MainThread] Retrieved datatype module galaxy.datatypes.tabular:Tabular from the datatype registry for extension flowstat2. +galaxy.datatypes.registry DEBUG 2024-02-23 13:02:33,700 [pN:main,p:71805,tN:MainThread] Retrieved datatype module galaxy.datatypes.tabular:Tabular from the datatype registry for extension flowstat3. +galaxy.datatypes.registry DEBUG 2024-02-23 13:02:33,700 [pN:main,p:71805,tN:MainThread] Retrieved datatype module galaxy.datatypes.tabular:Tabular from the datatype registry for extension flowscore. +galaxy.datatypes.registry DEBUG 2024-02-23 13:02:33,700 [pN:main,p:71805,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:RData from the datatype registry for extension flowframe. +galaxy.datatypes.registry DEBUG 2024-02-23 13:02:33,700 [pN:main,p:71805,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:RData from the datatype registry for extension fsom. +galaxy.datatypes.registry DEBUG 2024-02-23 13:02:33,701 [pN:main,p:71805,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:RData from the datatype registry for extension flowset. +galaxy.datatypes.registry DEBUG 2024-02-23 13:02:33,701 [pN:main,p:71805,tN:MainThread] Retrieved datatype module galaxy.datatypes.tabular:Tabular from the datatype registry for extension metacyto_clr.txt. +galaxy.datatypes.registry DEBUG 2024-02-23 13:02:33,701 [pN:main,p:71805,tN:MainThread] Retrieved datatype module galaxy.datatypes.metacyto:mSummary from the datatype registry for extension metacyto_summary.txt. +galaxy.datatypes.registry DEBUG 2024-02-23 13:02:33,701 [pN:main,p:71805,tN:MainThread] Retrieved datatype module galaxy.datatypes.metacyto:mStats from the datatype registry for extension metacyto_stats.txt. +galaxy.datatypes.registry DEBUG 2024-02-23 13:02:33,701 [pN:main,p:71805,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:CompressedArchive from the datatype registry for extension deeptools_compute_matrix_archive. +galaxy.datatypes.registry DEBUG 2024-02-23 13:02:33,701 [pN:main,p:71805,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:CompressedArchive from the datatype registry for extension deeptools_coverage_matrix. +galaxy.datatypes.registry DEBUG 2024-02-23 13:02:33,701 [pN:main,p:71805,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:NetCDF from the datatype registry for extension netcdf. +galaxy.datatypes.registry DEBUG 2024-02-23 13:02:33,701 [pN:main,p:71805,tN:MainThread] Retrieved datatype module galaxy.datatypes.images:Eps from the datatype registry for extension eps. +galaxy.datatypes.registry DEBUG 2024-02-23 13:02:33,701 [pN:main,p:71805,tN:MainThread] Retrieved datatype module galaxy.datatypes.images:Rast from the datatype registry for extension rast. +galaxy.datatypes.registry DEBUG 2024-02-23 13:02:33,701 [pN:main,p:71805,tN:MainThread] Retrieved datatype module galaxy.datatypes.images:Laj from the datatype registry for extension laj. +galaxy.datatypes.registry DEBUG 2024-02-23 13:02:33,701 [pN:main,p:71805,tN:MainThread] Retrieved datatype module galaxy.datatypes.sequence:Lav from the datatype registry for extension lav. +galaxy.datatypes.registry DEBUG 2024-02-23 13:02:33,702 [pN:main,p:71805,tN:MainThread] Retrieved datatype module galaxy.datatypes.sequence:Maf from the datatype registry for extension maf. +galaxy.datatypes.registry DEBUG 2024-02-23 13:02:33,702 [pN:main,p:71805,tN:MainThread] Retrieved datatype module galaxy.datatypes.sequence:MafCustomTrack from the datatype registry for extension mafcustomtrack. +galaxy.datatypes.registry DEBUG 2024-02-23 13:02:33,702 [pN:main,p:71805,tN:MainThread] Retrieved datatype module galaxy.datatypes.tabular:MatrixMarket from the datatype registry for extension mtx. +galaxy.datatypes.registry DEBUG 2024-02-23 13:02:33,702 [pN:main,p:71805,tN:MainThread] Retrieved datatype module galaxy.datatypes.tabular:CMAP from the datatype registry for extension cmap. +galaxy.datatypes.registry DEBUG 2024-02-23 13:02:33,702 [pN:main,p:71805,tN:MainThread] Retrieved datatype module galaxy.datatypes.interval:ENCODEPeak from the datatype registry for extension encodepeak. +galaxy.datatypes.registry DEBUG 2024-02-23 13:02:33,702 [pN:main,p:71805,tN:MainThread] Retrieved datatype module galaxy.datatypes.images:Pdf from the datatype registry for extension pdf. +galaxy.datatypes.registry DEBUG 2024-02-23 13:02:33,702 [pN:main,p:71805,tN:MainThread] Retrieved datatype module galaxy.datatypes.tabular:Pileup from the datatype registry for extension pileup. +galaxy.datatypes.registry DEBUG 2024-02-23 13:02:33,702 [pN:main,p:71805,tN:MainThread] Retrieved datatype module galaxy.datatypes.tabular:Psl from the datatype registry for extension psl. +galaxy.datatypes.registry DEBUG 2024-02-23 13:02:33,702 [pN:main,p:71805,tN:MainThread] Retrieved datatype module galaxy.datatypes.text:Obo from the datatype registry for extension obo. +galaxy.datatypes.registry DEBUG 2024-02-23 13:02:33,702 [pN:main,p:71805,tN:MainThread] Retrieved datatype module galaxy.datatypes.xml:Owl from the datatype registry for extension owl. +galaxy.datatypes.registry DEBUG 2024-02-23 13:02:33,702 [pN:main,p:71805,tN:MainThread] Retrieved datatype module galaxy.datatypes.images:Png from the datatype registry for extension png. +galaxy.datatypes.registry DEBUG 2024-02-23 13:02:33,702 [pN:main,p:71805,tN:MainThread] Retrieved datatype module galaxy.datatypes.qualityscore:QualityScore from the datatype registry for extension qual. +galaxy.datatypes.registry DEBUG 2024-02-23 13:02:33,702 [pN:main,p:71805,tN:MainThread] Retrieved datatype module galaxy.datatypes.qualityscore:QualityScoreSolexa from the datatype registry for extension qualsolexa. +galaxy.datatypes.registry DEBUG 2024-02-23 13:02:33,702 [pN:main,p:71805,tN:MainThread] Retrieved datatype module galaxy.datatypes.qualityscore:QualityScoreIllumina from the datatype registry for extension qualillumina. +galaxy.datatypes.registry DEBUG 2024-02-23 13:02:33,702 [pN:main,p:71805,tN:MainThread] Retrieved datatype module galaxy.datatypes.qualityscore:QualityScoreSOLiD from the datatype registry for extension qualsolid. +galaxy.datatypes.registry DEBUG 2024-02-23 13:02:33,702 [pN:main,p:71805,tN:MainThread] Retrieved datatype module galaxy.datatypes.qualityscore:QualityScore454 from the datatype registry for extension qual454. +galaxy.datatypes.registry DEBUG 2024-02-23 13:02:33,703 [pN:main,p:71805,tN:MainThread] Retrieved datatype module galaxy.datatypes.assembly:Roadmaps from the datatype registry for extension roadmaps. +galaxy.datatypes.registry DEBUG 2024-02-23 13:02:33,703 [pN:main,p:71805,tN:MainThread] Retrieved datatype module galaxy.datatypes.tabular:Sam from the datatype registry for extension sam. +galaxy.datatypes.registry DEBUG 2024-02-23 13:02:33,703 [pN:main,p:71805,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:Scf from the datatype registry for extension scf. +galaxy.datatypes.registry DEBUG 2024-02-23 13:02:33,703 [pN:main,p:71805,tN:MainThread] Retrieved datatype module galaxy.datatypes.assembly:Sequences from the datatype registry for extension sequences. +galaxy.datatypes.registry DEBUG 2024-02-23 13:02:33,703 [pN:main,p:71805,tN:MainThread] Retrieved datatype module galaxy.datatypes.text:SnpEffDb from the datatype registry for extension snpeffdb. +galaxy.datatypes.registry DEBUG 2024-02-23 13:02:33,703 [pN:main,p:71805,tN:MainThread] Retrieved datatype module galaxy.datatypes.text:SnpSiftDbNSFP from the datatype registry for extension snpsiftdbnsfp. +galaxy.datatypes.registry DEBUG 2024-02-23 13:02:33,703 [pN:main,p:71805,tN:MainThread] Retrieved datatype module galaxy.datatypes.tabular:Tabular from the datatype registry for extension dbnsfp.tabular. +galaxy.datatypes.registry DEBUG 2024-02-23 13:02:33,703 [pN:main,p:71805,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:Sff from the datatype registry for extension sff. +galaxy.datatypes.registry DEBUG 2024-02-23 13:02:33,703 [pN:main,p:71805,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:Sra from the datatype registry for extension sra. +galaxy.datatypes.registry DEBUG 2024-02-23 13:02:33,703 [pN:main,p:71805,tN:MainThread] Retrieved datatype module galaxy.datatypes.tabular:SraManifest from the datatype registry for extension sra_manifest.tabular. +galaxy.datatypes.registry DEBUG 2024-02-23 13:02:33,703 [pN:main,p:71805,tN:MainThread] Retrieved datatype module galaxy.datatypes.xml:GenericXml from the datatype registry for extension svg. +galaxy.datatypes.registry DEBUG 2024-02-23 13:02:33,703 [pN:main,p:71805,tN:MainThread] Retrieved datatype module galaxy.datatypes.tabular:Taxonomy from the datatype registry for extension taxonomy. +galaxy.datatypes.registry DEBUG 2024-02-23 13:02:33,703 [pN:main,p:71805,tN:MainThread] Retrieved datatype module galaxy.datatypes.tabular:Tabular from the datatype registry for extension tabular. +galaxy.datatypes.registry DEBUG 2024-02-23 13:02:33,703 [pN:main,p:71805,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:TwoBit from the datatype registry for extension twobit. +galaxy.datatypes.registry DEBUG 2024-02-23 13:02:33,704 [pN:main,p:71805,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:SQmass from the datatype registry for extension sqmass. +galaxy.datatypes.registry DEBUG 2024-02-23 13:02:33,704 [pN:main,p:71805,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:GeminiSQLite from the datatype registry for extension gemini.sqlite. +galaxy.datatypes.registry DEBUG 2024-02-23 13:02:33,704 [pN:main,p:71805,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:ChiraSQLite from the datatype registry for extension chira.sqlite. +galaxy.datatypes.registry DEBUG 2024-02-23 13:02:33,704 [pN:main,p:71805,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:CuffDiffSQlite from the datatype registry for extension cuffdiff.sqlite. +galaxy.datatypes.registry DEBUG 2024-02-23 13:02:33,704 [pN:main,p:71805,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:GAFASQLite from the datatype registry for extension gafa.sqlite. +galaxy.datatypes.registry DEBUG 2024-02-23 13:02:33,704 [pN:main,p:71805,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:NcbiTaxonomySQlite from the datatype registry for extension ncbitaxonomy.sqlite. +galaxy.datatypes.registry DEBUG 2024-02-23 13:02:33,704 [pN:main,p:71805,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension txt. +galaxy.datatypes.registry DEBUG 2024-02-23 13:02:33,704 [pN:main,p:71805,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:LineCount from the datatype registry for extension linecount. +galaxy.datatypes.registry DEBUG 2024-02-23 13:02:33,704 [pN:main,p:71805,tN:MainThread] Retrieved datatype module galaxy.datatypes.sequence:MemePsp from the datatype registry for extension memepsp. +galaxy.datatypes.registry DEBUG 2024-02-23 13:02:33,704 [pN:main,p:71805,tN:MainThread] Retrieved datatype module galaxy.datatypes.xml:MEMEXml from the datatype registry for extension memexml. +galaxy.datatypes.registry DEBUG 2024-02-23 13:02:33,704 [pN:main,p:71805,tN:MainThread] Retrieved datatype module galaxy.datatypes.xml:CisML from the datatype registry for extension cisml. +galaxy.datatypes.registry DEBUG 2024-02-23 13:02:33,704 [pN:main,p:71805,tN:MainThread] Retrieved datatype module galaxy.datatypes.xml:GenericXml from the datatype registry for extension xml. +galaxy.datatypes.registry DEBUG 2024-02-23 13:02:33,704 [pN:main,p:71805,tN:MainThread] Retrieved datatype module galaxy.datatypes.xml:GenericXml from the datatype registry for extension xsd. +galaxy.datatypes.registry DEBUG 2024-02-23 13:02:33,704 [pN:main,p:71805,tN:MainThread] Retrieved datatype module galaxy.datatypes.xml:Dzi from the datatype registry for extension dzi. +galaxy.datatypes.registry DEBUG 2024-02-23 13:02:33,704 [pN:main,p:71805,tN:MainThread] Retrieved datatype module galaxy.datatypes.tabular:Vcf from the datatype registry for extension vcf. +galaxy.datatypes.registry DEBUG 2024-02-23 13:02:33,704 [pN:main,p:71805,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:Bcf from the datatype registry for extension bcf. +galaxy.datatypes.registry DEBUG 2024-02-23 13:02:33,705 [pN:main,p:71805,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:Bcf from the datatype registry for extension bcf_bgzip. +galaxy.datatypes.registry DEBUG 2024-02-23 13:02:33,705 [pN:main,p:71805,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:BcfUncompressed from the datatype registry for extension bcf_uncompressed. +galaxy.datatypes.registry DEBUG 2024-02-23 13:02:33,705 [pN:main,p:71805,tN:MainThread] Retrieved datatype module galaxy.datatypes.assembly:Velvet from the datatype registry for extension velvet. +galaxy.datatypes.registry DEBUG 2024-02-23 13:02:33,705 [pN:main,p:71805,tN:MainThread] Retrieved datatype module galaxy.datatypes.interval:Wiggle from the datatype registry for extension wig. +galaxy.datatypes.registry DEBUG 2024-02-23 13:02:33,705 [pN:main,p:71805,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:Binary from the datatype registry for extension interval_index. +galaxy.datatypes.registry DEBUG 2024-02-23 13:02:33,706 [pN:main,p:71805,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:Binary from the datatype registry for extension odgi. +galaxy.datatypes.registry DEBUG 2024-02-23 13:02:33,706 [pN:main,p:71805,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:CompressedArchive from the datatype registry for extension vg. +galaxy.datatypes.registry DEBUG 2024-02-23 13:02:33,706 [pN:main,p:71805,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:Binary from the datatype registry for extension xg. +galaxy.datatypes.registry DEBUG 2024-02-23 13:02:33,706 [pN:main,p:71805,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:Binary from the datatype registry for extension protobuf2. +galaxy.datatypes.registry DEBUG 2024-02-23 13:02:33,706 [pN:main,p:71805,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:Binary from the datatype registry for extension protobuf3. +galaxy.datatypes.registry DEBUG 2024-02-23 13:02:33,706 [pN:main,p:71805,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:Binary from the datatype registry for extension onnx. +galaxy.datatypes.registry DEBUG 2024-02-23 13:02:33,706 [pN:main,p:71805,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:Binary from the datatype registry for extension tabix. +galaxy.datatypes.registry DEBUG 2024-02-23 13:02:33,706 [pN:main,p:71805,tN:MainThread] Retrieved datatype module galaxy.datatypes.interval:IntervalTabix from the datatype registry for extension interval_tabix.gz. +galaxy.datatypes.registry DEBUG 2024-02-23 13:02:33,706 [pN:main,p:71805,tN:MainThread] Retrieved datatype module galaxy.datatypes.interval:JuicerMediumTabix from the datatype registry for extension juicer_medium_tabix.gz. +galaxy.datatypes.registry DEBUG 2024-02-23 13:02:33,706 [pN:main,p:71805,tN:MainThread] Retrieved datatype module galaxy.datatypes.interval:BedTabix from the datatype registry for extension bed_tabix.gz. +galaxy.datatypes.registry DEBUG 2024-02-23 13:02:33,706 [pN:main,p:71805,tN:MainThread] Retrieved datatype module galaxy.datatypes.interval:GffTabix from the datatype registry for extension gff_tabix.gz. +galaxy.datatypes.registry DEBUG 2024-02-23 13:02:33,706 [pN:main,p:71805,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:Binary from the datatype registry for extension bgzip. +galaxy.datatypes.registry DEBUG 2024-02-23 13:02:33,706 [pN:main,p:71805,tN:MainThread] Retrieved datatype module galaxy.datatypes.tabular:VcfGz from the datatype registry for extension vcf_bgzip. +galaxy.datatypes.registry DEBUG 2024-02-23 13:02:33,707 [pN:main,p:71805,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:Binary from the datatype registry for extension bus. +galaxy.datatypes.registry DEBUG 2024-02-23 13:02:33,707 [pN:main,p:71805,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:Binary from the datatype registry for extension kallisto.idx. +galaxy.datatypes.registry DEBUG 2024-02-23 13:02:33,707 [pN:main,p:71805,tN:MainThread] Retrieved datatype module galaxy.datatypes.xml:Phyloxml from the datatype registry for extension phyloxml. +galaxy.datatypes.registry DEBUG 2024-02-23 13:02:33,707 [pN:main,p:71805,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:Newick from the datatype registry for extension newick. +galaxy.datatypes.registry DEBUG 2024-02-23 13:02:33,707 [pN:main,p:71805,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:Newick from the datatype registry for extension nhx. +galaxy.datatypes.registry DEBUG 2024-02-23 13:02:33,707 [pN:main,p:71805,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:Nexus from the datatype registry for extension nex. +galaxy.datatypes.registry DEBUG 2024-02-23 13:02:33,707 [pN:main,p:71805,tN:MainThread] Retrieved datatype module galaxy.datatypes.text:IQTree from the datatype registry for extension iqtree. +galaxy.datatypes.registry DEBUG 2024-02-23 13:02:33,708 [pN:main,p:71805,tN:MainThread] Retrieved datatype module galaxy.datatypes.mothur:SquareDistanceMatrix from the datatype registry for extension mldist. +galaxy.datatypes.registry DEBUG 2024-02-23 13:02:33,709 [pN:main,p:71805,tN:MainThread] Retrieved datatype module galaxy.datatypes.genetics:Affybatch from the datatype registry for extension affybatch. +galaxy.datatypes.registry DEBUG 2024-02-23 13:02:33,710 [pN:main,p:71805,tN:MainThread] Retrieved datatype module galaxy.datatypes.genetics:Eigenstratgeno from the datatype registry for extension eigenstratgeno. +galaxy.datatypes.registry DEBUG 2024-02-23 13:02:33,710 [pN:main,p:71805,tN:MainThread] Retrieved datatype module galaxy.datatypes.genetics:Eigenstratpca from the datatype registry for extension eigenstratpca. +galaxy.datatypes.registry DEBUG 2024-02-23 13:02:33,710 [pN:main,p:71805,tN:MainThread] Retrieved datatype module galaxy.datatypes.genetics:Eset from the datatype registry for extension eset. +galaxy.datatypes.registry DEBUG 2024-02-23 13:02:33,710 [pN:main,p:71805,tN:MainThread] Retrieved datatype module galaxy.datatypes.genetics:Fped from the datatype registry for extension fped. +galaxy.datatypes.registry DEBUG 2024-02-23 13:02:33,710 [pN:main,p:71805,tN:MainThread] Retrieved datatype module galaxy.datatypes.genetics:Fphe from the datatype registry for extension fphe. +galaxy.datatypes.registry DEBUG 2024-02-23 13:02:33,710 [pN:main,p:71805,tN:MainThread] Retrieved datatype module galaxy.datatypes.genetics:GenomeGraphs from the datatype registry for extension gg. +galaxy.datatypes.registry DEBUG 2024-02-23 13:02:33,710 [pN:main,p:71805,tN:MainThread] Retrieved datatype module galaxy.datatypes.genetics:ldIndep from the datatype registry for extension ldindep. +galaxy.datatypes.registry DEBUG 2024-02-23 13:02:33,710 [pN:main,p:71805,tN:MainThread] Retrieved datatype module galaxy.datatypes.genetics:MAlist from the datatype registry for extension malist. +galaxy.datatypes.registry DEBUG 2024-02-23 13:02:33,710 [pN:main,p:71805,tN:MainThread] Retrieved datatype module galaxy.datatypes.genetics:Lped from the datatype registry for extension lped. +galaxy.datatypes.registry DEBUG 2024-02-23 13:02:33,710 [pN:main,p:71805,tN:MainThread] Retrieved datatype module galaxy.datatypes.genetics:Pbed from the datatype registry for extension pbed. +galaxy.datatypes.registry DEBUG 2024-02-23 13:02:33,710 [pN:main,p:71805,tN:MainThread] Retrieved datatype module galaxy.datatypes.genetics:Pheno from the datatype registry for extension pheno. +galaxy.datatypes.registry DEBUG 2024-02-23 13:02:33,710 [pN:main,p:71805,tN:MainThread] Retrieved datatype module galaxy.datatypes.genetics:Pphe from the datatype registry for extension pphe. +galaxy.datatypes.registry DEBUG 2024-02-23 13:02:33,711 [pN:main,p:71805,tN:MainThread] Retrieved datatype module galaxy.datatypes.genetics:RexpBase from the datatype registry for extension rexpbase. +galaxy.datatypes.registry DEBUG 2024-02-23 13:02:33,711 [pN:main,p:71805,tN:MainThread] Retrieved datatype module galaxy.datatypes.genetics:Rgenetics from the datatype registry for extension rgenetics. +galaxy.datatypes.registry DEBUG 2024-02-23 13:02:33,711 [pN:main,p:71805,tN:MainThread] Retrieved datatype module galaxy.datatypes.genetics:Snptest from the datatype registry for extension snptest. +galaxy.datatypes.registry DEBUG 2024-02-23 13:02:33,711 [pN:main,p:71805,tN:MainThread] Retrieved datatype module galaxy.datatypes.genetics:SNPMatrix from the datatype registry for extension snpmatrix. +galaxy.datatypes.registry DEBUG 2024-02-23 13:02:33,711 [pN:main,p:71805,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:ExcelXls from the datatype registry for extension xls. +galaxy.datatypes.registry DEBUG 2024-02-23 13:02:33,711 [pN:main,p:71805,tN:MainThread] Retrieved datatype module galaxy.datatypes.text:Ipynb from the datatype registry for extension ipynb. +galaxy.datatypes.registry DEBUG 2024-02-23 13:02:33,711 [pN:main,p:71805,tN:MainThread] Retrieved datatype module galaxy.datatypes.text:Json from the datatype registry for extension json. +galaxy.datatypes.registry DEBUG 2024-02-23 13:02:33,711 [pN:main,p:71805,tN:MainThread] Retrieved datatype module galaxy.datatypes.text:ExpressionJson from the datatype registry for extension expression.json. +galaxy.datatypes.registry DEBUG 2024-02-23 13:02:33,711 [pN:main,p:71805,tN:MainThread] Retrieved datatype module galaxy.datatypes.graph:Xgmml from the datatype registry for extension xgmml. +galaxy.datatypes.registry DEBUG 2024-02-23 13:02:33,712 [pN:main,p:71805,tN:MainThread] Retrieved datatype module galaxy.datatypes.graph:Sif from the datatype registry for extension sif. +galaxy.datatypes.registry DEBUG 2024-02-23 13:02:33,712 [pN:main,p:71805,tN:MainThread] Retrieved datatype module galaxy.datatypes.triples:Triples from the datatype registry for extension triples. +galaxy.datatypes.registry DEBUG 2024-02-23 13:02:33,712 [pN:main,p:71805,tN:MainThread] Retrieved datatype module galaxy.datatypes.triples:HDT from the datatype registry for extension hdt. +galaxy.datatypes.registry DEBUG 2024-02-23 13:02:33,712 [pN:main,p:71805,tN:MainThread] Retrieved datatype module galaxy.datatypes.triples:NTriples from the datatype registry for extension nt. +galaxy.datatypes.registry DEBUG 2024-02-23 13:02:33,712 [pN:main,p:71805,tN:MainThread] Retrieved datatype module galaxy.datatypes.triples:N3 from the datatype registry for extension n3. +galaxy.datatypes.registry DEBUG 2024-02-23 13:02:33,712 [pN:main,p:71805,tN:MainThread] Retrieved datatype module galaxy.datatypes.triples:Turtle from the datatype registry for extension ttl. +galaxy.datatypes.registry DEBUG 2024-02-23 13:02:33,712 [pN:main,p:71805,tN:MainThread] Retrieved datatype module galaxy.datatypes.triples:Rdf from the datatype registry for extension rdf. +galaxy.datatypes.registry DEBUG 2024-02-23 13:02:33,712 [pN:main,p:71805,tN:MainThread] Retrieved datatype module galaxy.datatypes.triples:Jsonld from the datatype registry for extension jsonld. +galaxy.datatypes.registry DEBUG 2024-02-23 13:02:33,713 [pN:main,p:71805,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:ExcelXls from the datatype registry for extension excel.xls. +galaxy.datatypes.registry DEBUG 2024-02-23 13:02:33,713 [pN:main,p:71805,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:Xlsx from the datatype registry for extension xlsx. +galaxy.datatypes.registry DEBUG 2024-02-23 13:02:33,713 [pN:main,p:71805,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:Binary from the datatype registry for extension docx. +galaxy.datatypes.registry DEBUG 2024-02-23 13:02:33,713 [pN:main,p:71805,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension btwisted. +galaxy.datatypes.registry DEBUG 2024-02-23 13:02:33,713 [pN:main,p:71805,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension cai. +galaxy.datatypes.registry DEBUG 2024-02-23 13:02:33,713 [pN:main,p:71805,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension cat_db. +galaxy.datatypes.registry DEBUG 2024-02-23 13:02:33,713 [pN:main,p:71805,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension charge. +galaxy.datatypes.registry DEBUG 2024-02-23 13:02:33,713 [pN:main,p:71805,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension checktrans. +galaxy.datatypes.registry DEBUG 2024-02-23 13:02:33,713 [pN:main,p:71805,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension chips. +galaxy.datatypes.registry DEBUG 2024-02-23 13:02:33,713 [pN:main,p:71805,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension codcmp. +galaxy.datatypes.registry DEBUG 2024-02-23 13:02:33,713 [pN:main,p:71805,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension coderet. +galaxy.datatypes.registry DEBUG 2024-02-23 13:02:33,713 [pN:main,p:71805,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension compseq. +galaxy.datatypes.registry DEBUG 2024-02-23 13:02:33,714 [pN:main,p:71805,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension cpgplot. +galaxy.datatypes.registry DEBUG 2024-02-23 13:02:33,714 [pN:main,p:71805,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension cpgreport. +galaxy.datatypes.registry DEBUG 2024-02-23 13:02:33,714 [pN:main,p:71805,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension cusp. +galaxy.datatypes.registry DEBUG 2024-02-23 13:02:33,714 [pN:main,p:71805,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension cut. +galaxy.datatypes.registry DEBUG 2024-02-23 13:02:33,714 [pN:main,p:71805,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension dan. +galaxy.datatypes.registry DEBUG 2024-02-23 13:02:33,714 [pN:main,p:71805,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension digest. +galaxy.datatypes.registry DEBUG 2024-02-23 13:02:33,714 [pN:main,p:71805,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension dreg. +galaxy.datatypes.registry DEBUG 2024-02-23 13:02:33,714 [pN:main,p:71805,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension einverted. +galaxy.datatypes.registry DEBUG 2024-02-23 13:02:33,714 [pN:main,p:71805,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension epestfind. +galaxy.datatypes.registry DEBUG 2024-02-23 13:02:33,714 [pN:main,p:71805,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension equicktandem. +galaxy.datatypes.registry DEBUG 2024-02-23 13:02:33,714 [pN:main,p:71805,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension est2genome. +galaxy.datatypes.registry DEBUG 2024-02-23 13:02:33,714 [pN:main,p:71805,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension etandem. +galaxy.datatypes.registry DEBUG 2024-02-23 13:02:33,714 [pN:main,p:71805,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension freak. +galaxy.datatypes.registry DEBUG 2024-02-23 13:02:33,714 [pN:main,p:71805,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension fuzznuc. +galaxy.datatypes.registry DEBUG 2024-02-23 13:02:33,715 [pN:main,p:71805,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension fuzzpro. +galaxy.datatypes.registry DEBUG 2024-02-23 13:02:33,715 [pN:main,p:71805,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension fuzztran. +galaxy.datatypes.registry DEBUG 2024-02-23 13:02:33,715 [pN:main,p:71805,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension garnier. +galaxy.datatypes.registry DEBUG 2024-02-23 13:02:33,715 [pN:main,p:71805,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension geecee. +galaxy.datatypes.registry DEBUG 2024-02-23 13:02:33,715 [pN:main,p:71805,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension helixturnhelix. +galaxy.datatypes.registry DEBUG 2024-02-23 13:02:33,715 [pN:main,p:71805,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension hmoment. +galaxy.datatypes.registry DEBUG 2024-02-23 13:02:33,715 [pN:main,p:71805,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension isochore. +galaxy.datatypes.registry DEBUG 2024-02-23 13:02:33,715 [pN:main,p:71805,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension match. +galaxy.datatypes.registry DEBUG 2024-02-23 13:02:33,715 [pN:main,p:71805,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension nametable. +galaxy.datatypes.registry DEBUG 2024-02-23 13:02:33,715 [pN:main,p:71805,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension needle. +galaxy.datatypes.registry DEBUG 2024-02-23 13:02:33,715 [pN:main,p:71805,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension newcpgreport. +galaxy.datatypes.registry DEBUG 2024-02-23 13:02:33,715 [pN:main,p:71805,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension newcpgseek. +galaxy.datatypes.registry DEBUG 2024-02-23 13:02:33,715 [pN:main,p:71805,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension noreturn. +galaxy.datatypes.registry DEBUG 2024-02-23 13:02:33,715 [pN:main,p:71805,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension palindrome. +galaxy.datatypes.registry DEBUG 2024-02-23 13:02:33,716 [pN:main,p:71805,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension pepcoil. +galaxy.datatypes.registry DEBUG 2024-02-23 13:02:33,716 [pN:main,p:71805,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension pepinfo. +galaxy.datatypes.registry DEBUG 2024-02-23 13:02:33,716 [pN:main,p:71805,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension pepstats. +galaxy.datatypes.registry DEBUG 2024-02-23 13:02:33,716 [pN:main,p:71805,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension polydot. +galaxy.datatypes.registry DEBUG 2024-02-23 13:02:33,716 [pN:main,p:71805,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension preg. +galaxy.datatypes.registry DEBUG 2024-02-23 13:02:33,716 [pN:main,p:71805,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension prettyseq. +galaxy.datatypes.registry DEBUG 2024-02-23 13:02:33,716 [pN:main,p:71805,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension primersearch. +galaxy.datatypes.registry DEBUG 2024-02-23 13:02:33,716 [pN:main,p:71805,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension showfeat. +galaxy.datatypes.registry DEBUG 2024-02-23 13:02:33,716 [pN:main,p:71805,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension showorf. +galaxy.datatypes.registry DEBUG 2024-02-23 13:02:33,716 [pN:main,p:71805,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension sixpack. +galaxy.datatypes.registry DEBUG 2024-02-23 13:02:33,716 [pN:main,p:71805,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension strider. +galaxy.datatypes.registry DEBUG 2024-02-23 13:02:33,716 [pN:main,p:71805,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension supermatcher. +galaxy.datatypes.registry DEBUG 2024-02-23 13:02:33,716 [pN:main,p:71805,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension syco. +galaxy.datatypes.registry DEBUG 2024-02-23 13:02:33,716 [pN:main,p:71805,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension textsearch. +galaxy.datatypes.registry DEBUG 2024-02-23 13:02:33,717 [pN:main,p:71805,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension vectorstrip. +galaxy.datatypes.registry DEBUG 2024-02-23 13:02:33,717 [pN:main,p:71805,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension wobble. +galaxy.datatypes.registry DEBUG 2024-02-23 13:02:33,717 [pN:main,p:71805,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension wordcount. +galaxy.datatypes.registry DEBUG 2024-02-23 13:02:33,717 [pN:main,p:71805,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension dbmotif. +galaxy.datatypes.registry DEBUG 2024-02-23 13:02:33,717 [pN:main,p:71805,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension diffseq. +galaxy.datatypes.registry DEBUG 2024-02-23 13:02:33,717 [pN:main,p:71805,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension excel. +galaxy.datatypes.registry DEBUG 2024-02-23 13:02:33,717 [pN:main,p:71805,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension feattable. +galaxy.datatypes.registry DEBUG 2024-02-23 13:02:33,717 [pN:main,p:71805,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension motif. +galaxy.datatypes.registry DEBUG 2024-02-23 13:02:33,717 [pN:main,p:71805,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension regions. +galaxy.datatypes.registry DEBUG 2024-02-23 13:02:33,717 [pN:main,p:71805,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension seqtable. +galaxy.datatypes.registry DEBUG 2024-02-23 13:02:33,717 [pN:main,p:71805,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension simple. +galaxy.datatypes.registry DEBUG 2024-02-23 13:02:33,717 [pN:main,p:71805,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension table. +galaxy.datatypes.registry DEBUG 2024-02-23 13:02:33,717 [pN:main,p:71805,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension tagseq. +galaxy.datatypes.registry DEBUG 2024-02-23 13:02:33,717 [pN:main,p:71805,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension acedb. +galaxy.datatypes.registry DEBUG 2024-02-23 13:02:33,718 [pN:main,p:71805,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension clustal. +galaxy.datatypes.registry DEBUG 2024-02-23 13:02:33,718 [pN:main,p:71805,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension codata. +galaxy.datatypes.registry DEBUG 2024-02-23 13:02:33,718 [pN:main,p:71805,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension embl. +galaxy.datatypes.registry DEBUG 2024-02-23 13:02:33,718 [pN:main,p:71805,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension fitch. +galaxy.datatypes.registry DEBUG 2024-02-23 13:02:33,718 [pN:main,p:71805,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension gcg. +galaxy.datatypes.registry DEBUG 2024-02-23 13:02:33,718 [pN:main,p:71805,tN:MainThread] Retrieved datatype module galaxy.datatypes.sequence:Genbank from the datatype registry for extension genbank. +galaxy.datatypes.registry DEBUG 2024-02-23 13:02:33,718 [pN:main,p:71805,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension hennig86. +galaxy.datatypes.registry DEBUG 2024-02-23 13:02:33,718 [pN:main,p:71805,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension ig. +galaxy.datatypes.registry DEBUG 2024-02-23 13:02:33,718 [pN:main,p:71805,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension jackknifer. +galaxy.datatypes.registry DEBUG 2024-02-23 13:02:33,718 [pN:main,p:71805,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension jackknifernon. +galaxy.datatypes.registry DEBUG 2024-02-23 13:02:33,718 [pN:main,p:71805,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension mega. +galaxy.datatypes.registry DEBUG 2024-02-23 13:02:33,718 [pN:main,p:71805,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension meganon. +galaxy.datatypes.registry DEBUG 2024-02-23 13:02:33,718 [pN:main,p:71805,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension ncbi. +galaxy.datatypes.registry DEBUG 2024-02-23 13:02:33,719 [pN:main,p:71805,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension nexus. +galaxy.datatypes.registry DEBUG 2024-02-23 13:02:33,719 [pN:main,p:71805,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension nexusnon. +galaxy.datatypes.registry DEBUG 2024-02-23 13:02:33,719 [pN:main,p:71805,tN:MainThread] Retrieved datatype module galaxy.datatypes.phylip:Phylip from the datatype registry for extension phylip. +galaxy.datatypes.registry DEBUG 2024-02-23 13:02:33,719 [pN:main,p:71805,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension phylipnon. +galaxy.datatypes.registry DEBUG 2024-02-23 13:02:33,719 [pN:main,p:71805,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension pir. +galaxy.datatypes.registry DEBUG 2024-02-23 13:02:33,719 [pN:main,p:71805,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension staden. +galaxy.datatypes.registry DEBUG 2024-02-23 13:02:33,719 [pN:main,p:71805,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension swiss. +galaxy.datatypes.registry DEBUG 2024-02-23 13:02:33,720 [pN:main,p:71805,tN:MainThread] Retrieved datatype module galaxy.datatypes.msa:Msf from the datatype registry for extension msf. +galaxy.datatypes.registry DEBUG 2024-02-23 13:02:33,720 [pN:main,p:71805,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension markx0. +galaxy.datatypes.registry DEBUG 2024-02-23 13:02:33,720 [pN:main,p:71805,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension markx1. +galaxy.datatypes.registry DEBUG 2024-02-23 13:02:33,720 [pN:main,p:71805,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension markx10. +galaxy.datatypes.registry DEBUG 2024-02-23 13:02:33,720 [pN:main,p:71805,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension markx2. +galaxy.datatypes.registry DEBUG 2024-02-23 13:02:33,720 [pN:main,p:71805,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension markx3. +galaxy.datatypes.registry DEBUG 2024-02-23 13:02:33,720 [pN:main,p:71805,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension pair. +galaxy.datatypes.registry DEBUG 2024-02-23 13:02:33,720 [pN:main,p:71805,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension score. +galaxy.datatypes.registry DEBUG 2024-02-23 13:02:33,720 [pN:main,p:71805,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension srs. +galaxy.datatypes.registry DEBUG 2024-02-23 13:02:33,721 [pN:main,p:71805,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension srspair. +galaxy.datatypes.registry DEBUG 2024-02-23 13:02:33,721 [pN:main,p:71805,tN:MainThread] Retrieved datatype module galaxy.datatypes.annotation:SnapHmm from the datatype registry for extension snaphmm. +galaxy.datatypes.registry DEBUG 2024-02-23 13:02:33,721 [pN:main,p:71805,tN:MainThread] Retrieved datatype module galaxy.datatypes.annotation:Augustus from the datatype registry for extension augustus. +galaxy.datatypes.registry DEBUG 2024-02-23 13:02:33,721 [pN:main,p:71805,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:ICM from the datatype registry for extension icm. +galaxy.datatypes.registry DEBUG 2024-02-23 13:02:33,721 [pN:main,p:71805,tN:MainThread] Retrieved datatype module galaxy.datatypes.msa:InfernalCM from the datatype registry for extension cm. +galaxy.datatypes.registry DEBUG 2024-02-23 13:02:33,721 [pN:main,p:71805,tN:MainThread] Retrieved datatype module galaxy.datatypes.msa:Hmmer2 from the datatype registry for extension hmm2. +galaxy.datatypes.registry DEBUG 2024-02-23 13:02:33,721 [pN:main,p:71805,tN:MainThread] Retrieved datatype module galaxy.datatypes.msa:Hmmer3 from the datatype registry for extension hmm3. +galaxy.datatypes.registry DEBUG 2024-02-23 13:02:33,721 [pN:main,p:71805,tN:MainThread] Retrieved datatype module galaxy.datatypes.msa:Stockholm_1_0 from the datatype registry for extension stockholm. +galaxy.datatypes.registry DEBUG 2024-02-23 13:02:33,721 [pN:main,p:71805,tN:MainThread] Retrieved datatype module galaxy.datatypes.msa:MauveXmfa from the datatype registry for extension xmfa. +galaxy.datatypes.registry DEBUG 2024-02-23 13:02:33,722 [pN:main,p:71805,tN:MainThread] Retrieved datatype module galaxy.datatypes.microarrays:Cel from the datatype registry for extension cel. +galaxy.datatypes.registry DEBUG 2024-02-23 13:02:33,722 [pN:main,p:71805,tN:MainThread] Retrieved datatype module galaxy.datatypes.microarrays:Gpr from the datatype registry for extension gpr. +galaxy.datatypes.registry DEBUG 2024-02-23 13:02:33,722 [pN:main,p:71805,tN:MainThread] Retrieved datatype module galaxy.datatypes.microarrays:Gal from the datatype registry for extension gal. +galaxy.datatypes.registry DEBUG 2024-02-23 13:02:33,722 [pN:main,p:71805,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:RDS from the datatype registry for extension rds. +galaxy.datatypes.registry DEBUG 2024-02-23 13:02:33,722 [pN:main,p:71805,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:RDS from the datatype registry for extension phyloseq. +galaxy.datatypes.registry DEBUG 2024-02-23 13:02:33,722 [pN:main,p:71805,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:RData from the datatype registry for extension rdata. +galaxy.datatypes.registry DEBUG 2024-02-23 13:02:33,722 [pN:main,p:71805,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:RData from the datatype registry for extension rdata.sce. +galaxy.datatypes.registry DEBUG 2024-02-23 13:02:33,722 [pN:main,p:71805,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:RData from the datatype registry for extension rdata.xcms.raw. +galaxy.datatypes.registry DEBUG 2024-02-23 13:02:33,722 [pN:main,p:71805,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:RData from the datatype registry for extension rdata.msnbase.raw. +galaxy.datatypes.registry DEBUG 2024-02-23 13:02:33,722 [pN:main,p:71805,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:RData from the datatype registry for extension rdata.xcms.findchrompeaks. +galaxy.datatypes.registry DEBUG 2024-02-23 13:02:33,722 [pN:main,p:71805,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:RData from the datatype registry for extension rdata.xcms.group. +galaxy.datatypes.registry DEBUG 2024-02-23 13:02:33,722 [pN:main,p:71805,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:RData from the datatype registry for extension rdata.xcms.retcor. +galaxy.datatypes.registry DEBUG 2024-02-23 13:02:33,723 [pN:main,p:71805,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:RData from the datatype registry for extension rdata.xcms.fillpeaks. +galaxy.datatypes.registry DEBUG 2024-02-23 13:02:33,723 [pN:main,p:71805,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:RData from the datatype registry for extension rdata.camera.positive. +galaxy.datatypes.registry DEBUG 2024-02-23 13:02:33,723 [pN:main,p:71805,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:RData from the datatype registry for extension rdata.camera.negative. +galaxy.datatypes.registry DEBUG 2024-02-23 13:02:33,723 [pN:main,p:71805,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:RData from the datatype registry for extension rdata.camera.quick. +galaxy.datatypes.registry DEBUG 2024-02-23 13:02:33,723 [pN:main,p:71805,tN:MainThread] Retrieved datatype module galaxy.datatypes.hdf5:HDF5SummarizedExperiment from the datatype registry for extension rdata.se. +galaxy.datatypes.registry DEBUG 2024-02-23 13:02:33,723 [pN:main,p:71805,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:Binary from the datatype registry for extension rdock_as. +galaxy.datatypes.registry DEBUG 2024-02-23 13:02:33,723 [pN:main,p:71805,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:OxliCountGraph from the datatype registry for extension oxlicg. +galaxy.datatypes.registry DEBUG 2024-02-23 13:02:33,723 [pN:main,p:71805,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:OxliNodeGraph from the datatype registry for extension oxling. +galaxy.datatypes.registry DEBUG 2024-02-23 13:02:33,723 [pN:main,p:71805,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:OxliTagSet from the datatype registry for extension oxlits. +galaxy.datatypes.registry DEBUG 2024-02-23 13:02:33,723 [pN:main,p:71805,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:OxliStopTags from the datatype registry for extension oxlist. +galaxy.datatypes.registry DEBUG 2024-02-23 13:02:33,723 [pN:main,p:71805,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:OxliSubset from the datatype registry for extension oxliss. +galaxy.datatypes.registry DEBUG 2024-02-23 13:02:33,723 [pN:main,p:71805,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:OxliGraphLabels from the datatype registry for extension oxligl. +galaxy.datatypes.registry DEBUG 2024-02-23 13:02:33,724 [pN:main,p:71805,tN:MainThread] Retrieved datatype module galaxy.datatypes.constructive_solid_geometry:STL from the datatype registry for extension stl. +galaxy.datatypes.registry DEBUG 2024-02-23 13:02:33,724 [pN:main,p:71805,tN:MainThread] Retrieved datatype module galaxy.datatypes.constructive_solid_geometry:PlyAscii from the datatype registry for extension plyascii. +galaxy.datatypes.registry DEBUG 2024-02-23 13:02:33,724 [pN:main,p:71805,tN:MainThread] Retrieved datatype module galaxy.datatypes.constructive_solid_geometry:PlyBinary from the datatype registry for extension plybinary. +galaxy.datatypes.registry DEBUG 2024-02-23 13:02:33,724 [pN:main,p:71805,tN:MainThread] Retrieved datatype module galaxy.datatypes.constructive_solid_geometry:VtkAscii from the datatype registry for extension vtkascii. +galaxy.datatypes.registry DEBUG 2024-02-23 13:02:33,725 [pN:main,p:71805,tN:MainThread] Retrieved datatype module galaxy.datatypes.constructive_solid_geometry:VtkBinary from the datatype registry for extension vtkbinary. +galaxy.datatypes.registry DEBUG 2024-02-23 13:02:33,725 [pN:main,p:71805,tN:MainThread] Retrieved datatype module galaxy.datatypes.text:Biom1 from the datatype registry for extension biom1. +galaxy.datatypes.registry DEBUG 2024-02-23 13:02:33,725 [pN:main,p:71805,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:Biom2 from the datatype registry for extension biom2. +galaxy.datatypes.registry DEBUG 2024-02-23 13:02:33,725 [pN:main,p:71805,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:MashSketch from the datatype registry for extension msh. +galaxy.datatypes.registry DEBUG 2024-02-23 13:02:33,725 [pN:main,p:71805,tN:MainThread] Retrieved datatype module galaxy.datatypes.interval:ScIdx from the datatype registry for extension scidx. +galaxy.datatypes.registry DEBUG 2024-02-23 13:02:33,726 [pN:main,p:71805,tN:MainThread] Retrieved datatype module galaxy.datatypes.molecules:SMILES from the datatype registry for extension smi. +galaxy.datatypes.registry DEBUG 2024-02-23 13:02:33,726 [pN:main,p:71805,tN:MainThread] Retrieved datatype module galaxy.datatypes.molecules:SDF from the datatype registry for extension sdf. +galaxy.datatypes.registry DEBUG 2024-02-23 13:02:33,726 [pN:main,p:71805,tN:MainThread] Retrieved datatype module galaxy.datatypes.molecules:InChI from the datatype registry for extension inchi. +galaxy.datatypes.registry DEBUG 2024-02-23 13:02:33,726 [pN:main,p:71805,tN:MainThread] Retrieved datatype module galaxy.datatypes.molecules:MOL from the datatype registry for extension mol. +galaxy.datatypes.registry DEBUG 2024-02-23 13:02:33,726 [pN:main,p:71805,tN:MainThread] Retrieved datatype module galaxy.datatypes.molecules:MOL2 from the datatype registry for extension mol2. +galaxy.datatypes.registry DEBUG 2024-02-23 13:02:33,726 [pN:main,p:71805,tN:MainThread] Retrieved datatype module galaxy.datatypes.molecules:CML from the datatype registry for extension cml. +galaxy.datatypes.registry DEBUG 2024-02-23 13:02:33,726 [pN:main,p:71805,tN:MainThread] Retrieved datatype module galaxy.datatypes.molecules:FPS from the datatype registry for extension fps. +galaxy.datatypes.registry DEBUG 2024-02-23 13:02:33,727 [pN:main,p:71805,tN:MainThread] Retrieved datatype module galaxy.datatypes.molecules:OBFS from the datatype registry for extension obfs. +galaxy.datatypes.registry DEBUG 2024-02-23 13:02:33,727 [pN:main,p:71805,tN:MainThread] Retrieved datatype module galaxy.datatypes.molecules:DRF from the datatype registry for extension drf. +galaxy.datatypes.registry DEBUG 2024-02-23 13:02:33,727 [pN:main,p:71805,tN:MainThread] Retrieved datatype module galaxy.datatypes.molecules:PHAR from the datatype registry for extension phar. +galaxy.datatypes.registry DEBUG 2024-02-23 13:02:33,727 [pN:main,p:71805,tN:MainThread] Retrieved datatype module galaxy.datatypes.molecules:PDB from the datatype registry for extension pdb. +galaxy.datatypes.registry DEBUG 2024-02-23 13:02:33,727 [pN:main,p:71805,tN:MainThread] Retrieved datatype module galaxy.datatypes.molecules:PDBQT from the datatype registry for extension pdbqt. +galaxy.datatypes.registry DEBUG 2024-02-23 13:02:33,727 [pN:main,p:71805,tN:MainThread] Retrieved datatype module galaxy.datatypes.molecules:PQR from the datatype registry for extension pqr. +galaxy.datatypes.registry DEBUG 2024-02-23 13:02:33,727 [pN:main,p:71805,tN:MainThread] Retrieved datatype module galaxy.datatypes.molecules:Cell from the datatype registry for extension cell. +galaxy.datatypes.registry DEBUG 2024-02-23 13:02:33,727 [pN:main,p:71805,tN:MainThread] Retrieved datatype module galaxy.datatypes.molecules:CIF from the datatype registry for extension cif. +galaxy.datatypes.registry DEBUG 2024-02-23 13:02:33,727 [pN:main,p:71805,tN:MainThread] Retrieved datatype module galaxy.datatypes.molecules:XYZ from the datatype registry for extension xyz. +galaxy.datatypes.registry DEBUG 2024-02-23 13:02:33,727 [pN:main,p:71805,tN:MainThread] Retrieved datatype module galaxy.datatypes.molecules:ExtendedXYZ from the datatype registry for extension extxyz. +galaxy.datatypes.registry DEBUG 2024-02-23 13:02:33,727 [pN:main,p:71805,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:Trr from the datatype registry for extension trr. +galaxy.datatypes.registry DEBUG 2024-02-23 13:02:33,727 [pN:main,p:71805,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:Dcd from the datatype registry for extension dcd. +galaxy.datatypes.registry DEBUG 2024-02-23 13:02:33,727 [pN:main,p:71805,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension top. +galaxy.datatypes.registry DEBUG 2024-02-23 13:02:33,727 [pN:main,p:71805,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension prmtop. +galaxy.datatypes.registry DEBUG 2024-02-23 13:02:33,728 [pN:main,p:71805,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension itp. +galaxy.datatypes.registry DEBUG 2024-02-23 13:02:33,728 [pN:main,p:71805,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension mdp. +galaxy.datatypes.registry DEBUG 2024-02-23 13:02:33,728 [pN:main,p:71805,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension ndx. +galaxy.datatypes.registry DEBUG 2024-02-23 13:02:33,728 [pN:main,p:71805,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension xvg. +galaxy.datatypes.registry DEBUG 2024-02-23 13:02:33,728 [pN:main,p:71805,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:Xtc from the datatype registry for extension xtc. +galaxy.datatypes.registry DEBUG 2024-02-23 13:02:33,728 [pN:main,p:71805,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:Cpt from the datatype registry for extension cpt. +galaxy.datatypes.registry DEBUG 2024-02-23 13:02:33,728 [pN:main,p:71805,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:Edr from the datatype registry for extension edr. +galaxy.datatypes.registry DEBUG 2024-02-23 13:02:33,728 [pN:main,p:71805,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:Binary from the datatype registry for extension tpr. +galaxy.datatypes.registry DEBUG 2024-02-23 13:02:33,728 [pN:main,p:71805,tN:MainThread] Retrieved datatype module galaxy.datatypes.molecules:GRO from the datatype registry for extension gro. +galaxy.datatypes.registry DEBUG 2024-02-23 13:02:33,728 [pN:main,p:71805,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension inpcrd. +galaxy.datatypes.registry DEBUG 2024-02-23 13:02:33,728 [pN:main,p:71805,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:Vel from the datatype registry for extension vel. +galaxy.datatypes.registry DEBUG 2024-02-23 13:02:33,728 [pN:main,p:71805,tN:MainThread] Retrieved datatype module galaxy.datatypes.molecules:grd from the datatype registry for extension grd. +galaxy.datatypes.registry DEBUG 2024-02-23 13:02:33,728 [pN:main,p:71805,tN:MainThread] Retrieved datatype module galaxy.datatypes.molecules:grdtgz from the datatype registry for extension grd.tgz. +galaxy.datatypes.registry DEBUG 2024-02-23 13:02:33,728 [pN:main,p:71805,tN:MainThread] Retrieved datatype module galaxy.datatypes.mothur:Otu from the datatype registry for extension mothur.otu. +galaxy.datatypes.registry DEBUG 2024-02-23 13:02:33,729 [pN:main,p:71805,tN:MainThread] Retrieved datatype module galaxy.datatypes.mothur:Otu from the datatype registry for extension mothur.list. +galaxy.datatypes.registry DEBUG 2024-02-23 13:02:33,729 [pN:main,p:71805,tN:MainThread] Retrieved datatype module galaxy.datatypes.mothur:Sabund from the datatype registry for extension mothur.sabund. +galaxy.datatypes.registry DEBUG 2024-02-23 13:02:33,729 [pN:main,p:71805,tN:MainThread] Retrieved datatype module galaxy.datatypes.mothur:Sabund from the datatype registry for extension mothur.rabund. +galaxy.datatypes.registry DEBUG 2024-02-23 13:02:33,729 [pN:main,p:71805,tN:MainThread] Retrieved datatype module galaxy.datatypes.mothur:GroupAbund from the datatype registry for extension mothur.shared. +galaxy.datatypes.registry DEBUG 2024-02-23 13:02:33,729 [pN:main,p:71805,tN:MainThread] Retrieved datatype module galaxy.datatypes.mothur:GroupAbund from the datatype registry for extension mothur.relabund. +galaxy.datatypes.registry DEBUG 2024-02-23 13:02:33,729 [pN:main,p:71805,tN:MainThread] Retrieved datatype module galaxy.datatypes.mothur:Names from the datatype registry for extension mothur.names. +galaxy.datatypes.registry DEBUG 2024-02-23 13:02:33,729 [pN:main,p:71805,tN:MainThread] Retrieved datatype module galaxy.datatypes.mothur:Group from the datatype registry for extension mothur.design. +galaxy.datatypes.registry DEBUG 2024-02-23 13:02:33,729 [pN:main,p:71805,tN:MainThread] Retrieved datatype module galaxy.datatypes.mothur:Summary from the datatype registry for extension mothur.summary. +galaxy.datatypes.registry DEBUG 2024-02-23 13:02:33,729 [pN:main,p:71805,tN:MainThread] Retrieved datatype module galaxy.datatypes.mothur:Group from the datatype registry for extension mothur.groups. +galaxy.datatypes.registry DEBUG 2024-02-23 13:02:33,729 [pN:main,p:71805,tN:MainThread] Retrieved datatype module galaxy.datatypes.mothur:Oligos from the datatype registry for extension mothur.oligos. +galaxy.datatypes.registry DEBUG 2024-02-23 13:02:33,729 [pN:main,p:71805,tN:MainThread] Retrieved datatype module galaxy.datatypes.sequence:Fasta from the datatype registry for extension mothur.align. +galaxy.datatypes.registry DEBUG 2024-02-23 13:02:33,729 [pN:main,p:71805,tN:MainThread] Retrieved datatype module galaxy.datatypes.mothur:AccNos from the datatype registry for extension mothur.accnos. +galaxy.datatypes.registry DEBUG 2024-02-23 13:02:33,729 [pN:main,p:71805,tN:MainThread] Retrieved datatype module galaxy.datatypes.mothur:AccNos from the datatype registry for extension mothur.otulabels. +galaxy.datatypes.registry DEBUG 2024-02-23 13:02:33,730 [pN:main,p:71805,tN:MainThread] Retrieved datatype module galaxy.datatypes.tabular:Tabular from the datatype registry for extension mothur.otu.corr. +galaxy.datatypes.registry DEBUG 2024-02-23 13:02:33,730 [pN:main,p:71805,tN:MainThread] Retrieved datatype module galaxy.datatypes.mothur:SecondaryStructureMap from the datatype registry for extension mothur.map. +galaxy.datatypes.registry DEBUG 2024-02-23 13:02:33,730 [pN:main,p:71805,tN:MainThread] Retrieved datatype module galaxy.datatypes.mothur:AlignCheck from the datatype registry for extension mothur.align.check. +galaxy.datatypes.registry DEBUG 2024-02-23 13:02:33,730 [pN:main,p:71805,tN:MainThread] Retrieved datatype module galaxy.datatypes.mothur:AlignReport from the datatype registry for extension mothur.align.report. +galaxy.datatypes.registry DEBUG 2024-02-23 13:02:33,730 [pN:main,p:71805,tN:MainThread] Retrieved datatype module galaxy.datatypes.mothur:LaneMask from the datatype registry for extension mothur.filter. +galaxy.datatypes.registry DEBUG 2024-02-23 13:02:33,730 [pN:main,p:71805,tN:MainThread] Retrieved datatype module galaxy.datatypes.mothur:DistanceMatrix from the datatype registry for extension mothur.dist. +galaxy.datatypes.registry DEBUG 2024-02-23 13:02:33,730 [pN:main,p:71805,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension mothur.tre. +galaxy.datatypes.registry DEBUG 2024-02-23 13:02:33,730 [pN:main,p:71805,tN:MainThread] Retrieved datatype module galaxy.datatypes.mothur:PairwiseDistanceMatrix from the datatype registry for extension mothur.pair.dist. +galaxy.datatypes.registry DEBUG 2024-02-23 13:02:33,730 [pN:main,p:71805,tN:MainThread] Retrieved datatype module galaxy.datatypes.mothur:SquareDistanceMatrix from the datatype registry for extension mothur.square.dist. +galaxy.datatypes.registry DEBUG 2024-02-23 13:02:33,730 [pN:main,p:71805,tN:MainThread] Retrieved datatype module galaxy.datatypes.mothur:LowerTriangleDistanceMatrix from the datatype registry for extension mothur.lower.dist. +galaxy.datatypes.registry DEBUG 2024-02-23 13:02:33,730 [pN:main,p:71805,tN:MainThread] Retrieved datatype module galaxy.datatypes.mothur:RefTaxonomy from the datatype registry for extension mothur.ref.taxonomy. +galaxy.datatypes.registry DEBUG 2024-02-23 13:02:33,730 [pN:main,p:71805,tN:MainThread] Retrieved datatype module galaxy.datatypes.mothur:RefTaxonomy from the datatype registry for extension mothur.seq.taxonomy. +galaxy.datatypes.registry DEBUG 2024-02-23 13:02:33,730 [pN:main,p:71805,tN:MainThread] Retrieved datatype module galaxy.datatypes.mothur:RefTaxonomy from the datatype registry for extension mothur.rdp.taxonomy. +galaxy.datatypes.registry DEBUG 2024-02-23 13:02:33,730 [pN:main,p:71805,tN:MainThread] Retrieved datatype module galaxy.datatypes.mothur:ConsensusTaxonomy from the datatype registry for extension mothur.cons.taxonomy. +galaxy.datatypes.registry DEBUG 2024-02-23 13:02:33,731 [pN:main,p:71805,tN:MainThread] Retrieved datatype module galaxy.datatypes.mothur:TaxonomySummary from the datatype registry for extension mothur.tax.summary. +galaxy.datatypes.registry DEBUG 2024-02-23 13:02:33,731 [pN:main,p:71805,tN:MainThread] Retrieved datatype module galaxy.datatypes.mothur:Frequency from the datatype registry for extension mothur.freq. +galaxy.datatypes.registry DEBUG 2024-02-23 13:02:33,731 [pN:main,p:71805,tN:MainThread] Retrieved datatype module galaxy.datatypes.mothur:Quantile from the datatype registry for extension mothur.quan. +galaxy.datatypes.registry DEBUG 2024-02-23 13:02:33,731 [pN:main,p:71805,tN:MainThread] Retrieved datatype module galaxy.datatypes.mothur:Quantile from the datatype registry for extension mothur.filtered.quan. +galaxy.datatypes.registry DEBUG 2024-02-23 13:02:33,731 [pN:main,p:71805,tN:MainThread] Retrieved datatype module galaxy.datatypes.mothur:Quantile from the datatype registry for extension mothur.masked.quan. +galaxy.datatypes.registry DEBUG 2024-02-23 13:02:33,731 [pN:main,p:71805,tN:MainThread] Retrieved datatype module galaxy.datatypes.mothur:Quantile from the datatype registry for extension mothur.filtered.masked.quan. +galaxy.datatypes.registry DEBUG 2024-02-23 13:02:33,731 [pN:main,p:71805,tN:MainThread] Retrieved datatype module galaxy.datatypes.mothur:Axes from the datatype registry for extension mothur.axes. +galaxy.datatypes.registry DEBUG 2024-02-23 13:02:33,731 [pN:main,p:71805,tN:MainThread] Retrieved datatype module galaxy.datatypes.mothur:SffFlow from the datatype registry for extension mothur.sff.flow. +galaxy.datatypes.registry DEBUG 2024-02-23 13:02:33,731 [pN:main,p:71805,tN:MainThread] Retrieved datatype module galaxy.datatypes.mothur:CountTable from the datatype registry for extension mothur.count_table. +galaxy.datatypes.registry DEBUG 2024-02-23 13:02:33,731 [pN:main,p:71805,tN:MainThread] Retrieved datatype module galaxy.datatypes.neo4j:Neo4jDB from the datatype registry for extension neostore. +galaxy.datatypes.registry DEBUG 2024-02-23 13:02:33,732 [pN:main,p:71805,tN:MainThread] Retrieved datatype module galaxy.datatypes.neo4j:Neo4jDBzip from the datatype registry for extension neostore.zip. +galaxy.datatypes.registry DEBUG 2024-02-23 13:02:33,732 [pN:main,p:71805,tN:MainThread] Retrieved datatype module galaxy.datatypes.tracks:UCSCTrackHub from the datatype registry for extension trackhub. +galaxy.datatypes.registry DEBUG 2024-02-23 13:02:33,732 [pN:main,p:71805,tN:MainThread] Retrieved datatype module galaxy.datatypes.blast:BlastXml from the datatype registry for extension blastxml. +galaxy.datatypes.registry DEBUG 2024-02-23 13:02:33,732 [pN:main,p:71805,tN:MainThread] Retrieved datatype module galaxy.datatypes.blast:BlastNucDb from the datatype registry for extension blastdbn. +galaxy.datatypes.registry DEBUG 2024-02-23 13:02:33,732 [pN:main,p:71805,tN:MainThread] Retrieved datatype module galaxy.datatypes.blast:BlastProtDb from the datatype registry for extension blastdbp. +galaxy.datatypes.registry DEBUG 2024-02-23 13:02:33,732 [pN:main,p:71805,tN:MainThread] Retrieved datatype module galaxy.datatypes.blast:BlastDomainDb from the datatype registry for extension blastdbd. +galaxy.datatypes.registry DEBUG 2024-02-23 13:02:33,732 [pN:main,p:71805,tN:MainThread] Retrieved datatype module galaxy.datatypes.blast:LastDb from the datatype registry for extension lastdb. +galaxy.datatypes.registry DEBUG 2024-02-23 13:02:33,733 [pN:main,p:71805,tN:MainThread] Retrieved datatype module galaxy.datatypes.blast:BlastNucDb5 from the datatype registry for extension blastdbn5. +galaxy.datatypes.registry DEBUG 2024-02-23 13:02:33,733 [pN:main,p:71805,tN:MainThread] Retrieved datatype module galaxy.datatypes.blast:BlastProtDb5 from the datatype registry for extension blastdbp5. +galaxy.datatypes.registry DEBUG 2024-02-23 13:02:33,733 [pN:main,p:71805,tN:MainThread] Retrieved datatype module galaxy.datatypes.blast:BlastDomainDb5 from the datatype registry for extension blastdbd5. +galaxy.datatypes.registry DEBUG 2024-02-23 13:02:33,733 [pN:main,p:71805,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:GenericAsn1 from the datatype registry for extension maskinfo-asn1. +galaxy.datatypes.registry DEBUG 2024-02-23 13:02:33,733 [pN:main,p:71805,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:GenericAsn1Binary from the datatype registry for extension maskinfo-asn1-binary. +galaxy.datatypes.registry DEBUG 2024-02-23 13:02:33,733 [pN:main,p:71805,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:GenericAsn1 from the datatype registry for extension pssm-asn1. +galaxy.datatypes.registry DEBUG 2024-02-23 13:02:33,733 [pN:main,p:71805,tN:MainThread] Retrieved datatype module galaxy.datatypes.plant_tribes:PlantTribesKsComponents from the datatype registry for extension ptkscmp. +galaxy.datatypes.registry DEBUG 2024-02-23 13:02:33,733 [pN:main,p:71805,tN:MainThread] Retrieved datatype module galaxy.datatypes.plant_tribes:Smat from the datatype registry for extension smat. +galaxy.datatypes.registry DEBUG 2024-02-23 13:02:33,733 [pN:main,p:71805,tN:MainThread] Retrieved datatype module galaxy.datatypes.genetics:GenotypeMatrix from the datatype registry for extension alohomora_gts. +galaxy.datatypes.registry DEBUG 2024-02-23 13:02:33,734 [pN:main,p:71805,tN:MainThread] Retrieved datatype module galaxy.datatypes.tabular:Tabular from the datatype registry for extension alohomora_map. +galaxy.datatypes.registry DEBUG 2024-02-23 13:02:33,734 [pN:main,p:71805,tN:MainThread] Retrieved datatype module galaxy.datatypes.tabular:Tabular from the datatype registry for extension alohomora_maf. +galaxy.datatypes.registry DEBUG 2024-02-23 13:02:33,734 [pN:main,p:71805,tN:MainThread] Retrieved datatype module galaxy.datatypes.tabular:Tabular from the datatype registry for extension alohomora_ped. +galaxy.datatypes.registry DEBUG 2024-02-23 13:02:33,734 [pN:main,p:71805,tN:MainThread] Retrieved datatype module galaxy.datatypes.tabular:Tabular from the datatype registry for extension linkage_pedin. +galaxy.datatypes.registry DEBUG 2024-02-23 13:02:33,734 [pN:main,p:71805,tN:MainThread] Retrieved datatype module galaxy.datatypes.genetics:DataIn from the datatype registry for extension linkage_datain. +galaxy.datatypes.registry DEBUG 2024-02-23 13:02:33,734 [pN:main,p:71805,tN:MainThread] Retrieved datatype module galaxy.datatypes.genetics:MarkerMap from the datatype registry for extension linkage_map. +galaxy.datatypes.registry DEBUG 2024-02-23 13:02:33,734 [pN:main,p:71805,tN:MainThread] Retrieved datatype module galaxy.datatypes.tabular:Tabular from the datatype registry for extension allegro_ihaplo. +galaxy.datatypes.registry DEBUG 2024-02-23 13:02:33,734 [pN:main,p:71805,tN:MainThread] Retrieved datatype module galaxy.datatypes.tabular:Tabular from the datatype registry for extension allegro_descent. +galaxy.datatypes.registry DEBUG 2024-02-23 13:02:33,734 [pN:main,p:71805,tN:MainThread] Retrieved datatype module galaxy.datatypes.genetics:AllegroLOD from the datatype registry for extension allegro_fparam. +galaxy.datatypes.registry DEBUG 2024-02-23 13:02:33,734 [pN:main,p:71805,tN:MainThread] Retrieved datatype module galaxy.datatypes.genetics:IdeasPre from the datatype registry for extension ideaspre. +galaxy.datatypes.registry DEBUG 2024-02-23 13:02:33,734 [pN:main,p:71805,tN:MainThread] Retrieved datatype module galaxy.datatypes.xml:Sbml from the datatype registry for extension sbml. +galaxy.datatypes.registry DEBUG 2024-02-23 13:02:33,735 [pN:main,p:71805,tN:MainThread] Retrieved datatype module galaxy.datatypes.spaln:SpalnNuclDb from the datatype registry for extension spalndbnp. +galaxy.datatypes.registry DEBUG 2024-02-23 13:02:33,735 [pN:main,p:71805,tN:MainThread] Retrieved datatype module galaxy.datatypes.spaln:SpalnProtDb from the datatype registry for extension spalndba. +galaxy.datatypes.registry DEBUG 2024-02-23 13:02:33,735 [pN:main,p:71805,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:RDS from the datatype registry for extension dada2_dada. +galaxy.datatypes.registry DEBUG 2024-02-23 13:02:33,735 [pN:main,p:71805,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:RDS from the datatype registry for extension dada2_errorrates. +galaxy.datatypes.registry DEBUG 2024-02-23 13:02:33,736 [pN:main,p:71805,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:RDS from the datatype registry for extension dada2_mergepairs. +galaxy.datatypes.registry DEBUG 2024-02-23 13:02:33,736 [pN:main,p:71805,tN:MainThread] Retrieved datatype module galaxy.datatypes.tabular:Tabular from the datatype registry for extension dada2_sequencetable. +galaxy.datatypes.registry DEBUG 2024-02-23 13:02:33,736 [pN:main,p:71805,tN:MainThread] Retrieved datatype module galaxy.datatypes.tabular:Tabular from the datatype registry for extension dada2_uniques. +galaxy.datatypes.registry DEBUG 2024-02-23 13:02:33,736 [pN:main,p:71805,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:RDS from the datatype registry for extension ampvis2. +galaxy.datatypes.registry DEBUG 2024-02-23 13:02:33,736 [pN:main,p:71805,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:Binary from the datatype registry for extension ckpt. +galaxy.datatypes.registry DEBUG 2024-02-23 13:02:33,736 [pN:main,p:71805,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:Binary from the datatype registry for extension tgz. +galaxy.datatypes.registry DEBUG 2024-02-23 13:02:33,737 [pN:main,p:71805,tN:MainThread] Retrieved datatype module galaxy.datatypes.media:Wav from the datatype registry for extension wav. +galaxy.datatypes.registry DEBUG 2024-02-23 13:02:33,737 [pN:main,p:71805,tN:MainThread] Retrieved datatype module galaxy.datatypes.media:Mp3 from the datatype registry for extension mp3. +galaxy.datatypes.registry DEBUG 2024-02-23 13:02:33,738 [pN:main,p:71805,tN:MainThread] Retrieved datatype module galaxy.datatypes.media:Mkv from the datatype registry for extension mkv. +galaxy.datatypes.registry DEBUG 2024-02-23 13:02:33,738 [pN:main,p:71805,tN:MainThread] Retrieved datatype module galaxy.datatypes.media:Mp4 from the datatype registry for extension mp4. +galaxy.datatypes.registry DEBUG 2024-02-23 13:02:33,738 [pN:main,p:71805,tN:MainThread] Retrieved datatype module galaxy.datatypes.media:Flv from the datatype registry for extension flv. +galaxy.datatypes.registry DEBUG 2024-02-23 13:02:33,738 [pN:main,p:71805,tN:MainThread] Retrieved datatype module galaxy.datatypes.media:Mpg from the datatype registry for extension mpg. +galaxy.datatypes.registry DEBUG 2024-02-23 13:02:33,738 [pN:main,p:71805,tN:MainThread] Retrieved datatype module galaxy.datatypes.speech:TextGrid from the datatype registry for extension textgrid. +galaxy.datatypes.registry DEBUG 2024-02-23 13:02:33,738 [pN:main,p:71805,tN:MainThread] Retrieved datatype module galaxy.datatypes.speech:BPF from the datatype registry for extension par. +galaxy.datatypes.registry DEBUG 2024-02-23 13:02:33,738 [pN:main,p:71805,tN:MainThread] Retrieved datatype module galaxy.datatypes.tabular:Tabular from the datatype registry for extension ffindex. +galaxy.datatypes.registry DEBUG 2024-02-23 13:02:33,738 [pN:main,p:71805,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:Data from the datatype registry for extension ffdata. +galaxy.datatypes.registry DEBUG 2024-02-23 13:02:33,738 [pN:main,p:71805,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:Pretext from the datatype registry for extension pretext. +galaxy.datatypes.registry DEBUG 2024-02-23 13:02:33,738 [pN:main,p:71805,tN:MainThread] Retrieved datatype module galaxy.datatypes.text:Html from the datatype registry for extension immuneml_receptors.html. +galaxy.datatypes.registry DEBUG 2024-02-23 13:02:33,738 [pN:main,p:71805,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:HexrdMaterials from the datatype registry for extension hexrd.materials.h5. +galaxy.datatypes.registry DEBUG 2024-02-23 13:02:33,738 [pN:main,p:71805,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:Npz from the datatype registry for extension npz. +galaxy.datatypes.registry DEBUG 2024-02-23 13:02:33,739 [pN:main,p:71805,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:HexrdImagesNpz from the datatype registry for extension hexrd.images.npz. +galaxy.datatypes.registry DEBUG 2024-02-23 13:02:33,739 [pN:main,p:71805,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:HexrdEtaOmeNpz from the datatype registry for extension hexrd.eta_ome.npz. +galaxy.datatypes.registry DEBUG 2024-02-23 13:02:33,739 [pN:main,p:71805,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:Npz from the datatype registry for extension hexrd.scored_orientations.npz. +galaxy.datatypes.registry DEBUG 2024-02-23 13:02:33,739 [pN:main,p:71805,tN:MainThread] Retrieved datatype module galaxy.datatypes.tabular:Tabular from the datatype registry for extension hexrd.accepted_orientations. +galaxy.datatypes.registry DEBUG 2024-02-23 13:02:33,739 [pN:main,p:71805,tN:MainThread] Retrieved datatype module galaxy.datatypes.text:Yaml from the datatype registry for extension hexrd.yml. +galaxy.datatypes.registry DEBUG 2024-02-23 13:02:33,739 [pN:main,p:71805,tN:MainThread] Retrieved datatype module galaxy.datatypes.constructive_solid_geometry:NeperTess from the datatype registry for extension neper.tess. +galaxy.datatypes.registry DEBUG 2024-02-23 13:02:33,739 [pN:main,p:71805,tN:MainThread] Retrieved datatype module galaxy.datatypes.constructive_solid_geometry:NeperTesr from the datatype registry for extension neper.tesr. +galaxy.datatypes.registry DEBUG 2024-02-23 13:02:33,739 [pN:main,p:71805,tN:MainThread] Retrieved datatype module galaxy.datatypes.constructive_solid_geometry:NeperPoints from the datatype registry for extension neper.points. +galaxy.datatypes.registry DEBUG 2024-02-23 13:02:33,739 [pN:main,p:71805,tN:MainThread] Retrieved datatype module galaxy.datatypes.constructive_solid_geometry:NeperPointsTabular from the datatype registry for extension neper.points.tsv. +galaxy.datatypes.registry DEBUG 2024-02-23 13:02:33,739 [pN:main,p:71805,tN:MainThread] Retrieved datatype module galaxy.datatypes.constructive_solid_geometry:NeperMultiScaleCell from the datatype registry for extension neper.mscell. +galaxy.datatypes.registry DEBUG 2024-02-23 13:02:33,739 [pN:main,p:71805,tN:MainThread] Retrieved datatype module galaxy.datatypes.constructive_solid_geometry:GmshMsh from the datatype registry for extension gmsh.msh. +galaxy.datatypes.registry DEBUG 2024-02-23 13:02:33,739 [pN:main,p:71805,tN:MainThread] Retrieved datatype module galaxy.datatypes.constructive_solid_geometry:GmshGeo from the datatype registry for extension gmsh.geo. +galaxy.datatypes.registry DEBUG 2024-02-23 13:02:33,739 [pN:main,p:71805,tN:MainThread] Retrieved datatype module galaxy.datatypes.constructive_solid_geometry:ZsetGeof from the datatype registry for extension zset.geof. +galaxy.datatypes.registry DEBUG 2024-02-23 13:02:33,739 [pN:main,p:71805,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:Binary from the datatype registry for extension stl. +galaxy.datatypes.registry DEBUG 2024-02-23 13:02:33,739 [pN:main,p:71805,tN:MainThread] Overriding conflicting datatype with extension 'stl', using datatype from /scratch/rico/galaxy/lib/galaxy/config/sample/datatypes_conf.xml.sample. +galaxy.datatypes.registry DEBUG 2024-02-23 13:02:33,740 [pN:main,p:71805,tN:MainThread] Retrieved datatype module galaxy.datatypes.text:Text from the datatype registry for extension pov. +galaxy.datatypes.registry DEBUG 2024-02-23 13:02:33,740 [pN:main,p:71805,tN:MainThread] Retrieved datatype module galaxy.datatypes.text:PithyaResult from the datatype registry for extension pithya.result. +galaxy.datatypes.registry DEBUG 2024-02-23 13:02:33,740 [pN:main,p:71805,tN:MainThread] Retrieved datatype module galaxy.datatypes.text:PithyaProperty from the datatype registry for extension pithya.property. +galaxy.datatypes.registry DEBUG 2024-02-23 13:02:33,740 [pN:main,p:71805,tN:MainThread] Retrieved datatype module galaxy.datatypes.text:PithyaModel from the datatype registry for extension pithya.model. +galaxy.datatypes.registry DEBUG 2024-02-23 13:02:33,740 [pN:main,p:71805,tN:MainThread] Retrieved datatype module galaxy.datatypes.text:BCSLts from the datatype registry for extension bcsl.ts. +galaxy.datatypes.registry DEBUG 2024-02-23 13:02:33,740 [pN:main,p:71805,tN:MainThread] Retrieved datatype module galaxy.datatypes.text:BCSLmodel from the datatype registry for extension bcsl.model. +galaxy.datatypes.registry DEBUG 2024-02-23 13:02:33,740 [pN:main,p:71805,tN:MainThread] Retrieved datatype module galaxy.datatypes.text:StormSample from the datatype registry for extension storm.sample. +galaxy.datatypes.registry DEBUG 2024-02-23 13:02:33,740 [pN:main,p:71805,tN:MainThread] Retrieved datatype module galaxy.datatypes.text:StormCheck from the datatype registry for extension storm.check. +galaxy.datatypes.registry DEBUG 2024-02-23 13:02:33,740 [pN:main,p:71805,tN:MainThread] Retrieved datatype module galaxy.datatypes.text:CTLresult from the datatype registry for extension ctl.result. +galaxy.datatypes.registry DEBUG 2024-02-23 13:02:33,740 [pN:main,p:71805,tN:MainThread] Retrieved datatype module galaxy.datatypes.text:Castep from the datatype registry for extension castep. +galaxy.datatypes.registry DEBUG 2024-02-23 13:02:33,740 [pN:main,p:71805,tN:MainThread] Retrieved datatype module galaxy.datatypes.text:Param from the datatype registry for extension param. +galaxy.datatypes.registry DEBUG 2024-02-23 13:02:33,740 [pN:main,p:71805,tN:MainThread] Retrieved datatype module galaxy.datatypes.text:FormattedDensity from the datatype registry for extension den_fmt. +galaxy.datatypes.registry DEBUG 2024-02-23 13:02:33,741 [pN:main,p:71805,tN:MainThread] Retrieved datatype module galaxy.datatypes.larch:AthenaProject from the datatype registry for extension prj. +galaxy.datatypes.registry DEBUG 2024-02-23 13:02:33,741 [pN:main,p:71805,tN:MainThread] Retrieved datatype module galaxy.datatypes.larch:FEFFInput from the datatype registry for extension inp. +galaxy.datatypes.registry DEBUG 2024-02-23 13:02:33,741 [pN:main,p:71805,tN:MainThread] Retrieved datatype module galaxy.datatypes.tabular:CSV from the datatype registry for extension sp. +galaxy.datatypes.registry DEBUG 2024-02-23 13:02:33,741 [pN:main,p:71805,tN:MainThread] Retrieved datatype module galaxy.datatypes.tabular:CSV from the datatype registry for extension gds. +galaxy.datatypes.registry DEBUG 2024-02-23 13:02:33,741 [pN:main,p:71805,tN:MainThread] Retrieved datatype module galaxy.datatypes.tabular:CSV from the datatype registry for extension feff. +galaxy.datatypes.registry DEBUG 2024-02-23 13:02:33,741 [pN:main,p:71805,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension feffit. +galaxy.datatypes.registry DEBUG 2024-02-23 13:02:33,741 [pN:main,p:71805,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:Binary from the datatype registry for extension bil. +galaxy.datatypes.registry DEBUG 2024-02-23 13:02:33,741 [pN:main,p:71805,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension hdr. +galaxy.datatypes.registry DEBUG 2024-02-23 13:02:33,741 [pN:main,p:71805,tN:MainThread] Retrieved datatype module galaxy.datatypes.gis:Shapefile from the datatype registry for extension shp. +galaxy.datatypes.registry DEBUG 2024-02-23 13:02:33,742 [pN:main,p:71805,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:FITS from the datatype registry for extension fits. +galaxy.datatypes.registry DEBUG 2024-02-23 13:02:33,742 [pN:main,p:71805,tN:MainThread] Retrieved datatype module galaxy.datatypes.chain:Chain from the datatype registry for extension chain. +galaxy.datatypes.registry DEBUG 2024-02-23 13:02:33,742 [pN:main,p:71805,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.plant_tribes:PlantTribesKsComponents' +galaxy.datatypes.registry DEBUG 2024-02-23 13:02:33,742 [pN:main,p:71805,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.plant_tribes:Smat' +galaxy.datatypes.registry DEBUG 2024-02-23 13:02:33,742 [pN:main,p:71805,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.mothur:Sabund' +galaxy.datatypes.registry DEBUG 2024-02-23 13:02:33,742 [pN:main,p:71805,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.mothur:Otu' +galaxy.datatypes.registry DEBUG 2024-02-23 13:02:33,742 [pN:main,p:71805,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.mothur:GroupAbund' +galaxy.datatypes.registry DEBUG 2024-02-23 13:02:33,742 [pN:main,p:71805,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.mothur:SecondaryStructureMap' +galaxy.datatypes.registry DEBUG 2024-02-23 13:02:33,742 [pN:main,p:71805,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.mothur:LowerTriangleDistanceMatrix' +galaxy.datatypes.registry DEBUG 2024-02-23 13:02:33,742 [pN:main,p:71805,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.mothur:SquareDistanceMatrix' +galaxy.datatypes.registry DEBUG 2024-02-23 13:02:33,742 [pN:main,p:71805,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.mothur:PairwiseDistanceMatrix' +galaxy.datatypes.registry DEBUG 2024-02-23 13:02:33,742 [pN:main,p:71805,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.mothur:Oligos' +galaxy.datatypes.registry DEBUG 2024-02-23 13:02:33,742 [pN:main,p:71805,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.mothur:Quantile' +galaxy.datatypes.registry DEBUG 2024-02-23 13:02:33,742 [pN:main,p:71805,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.mothur:Frequency' +galaxy.datatypes.registry DEBUG 2024-02-23 13:02:33,742 [pN:main,p:71805,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.mothur:LaneMask' +galaxy.datatypes.registry DEBUG 2024-02-23 13:02:33,742 [pN:main,p:71805,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.mothur:RefTaxonomy' +galaxy.datatypes.registry DEBUG 2024-02-23 13:02:33,742 [pN:main,p:71805,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.mothur:Axes' +galaxy.datatypes.registry DEBUG 2024-02-23 13:02:33,743 [pN:main,p:71805,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.constructive_solid_geometry:PlyAscii' +galaxy.datatypes.registry DEBUG 2024-02-23 13:02:33,743 [pN:main,p:71805,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.constructive_solid_geometry:PlyBinary' +galaxy.datatypes.registry DEBUG 2024-02-23 13:02:33,743 [pN:main,p:71805,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.constructive_solid_geometry:VtkAscii' +galaxy.datatypes.registry DEBUG 2024-02-23 13:02:33,743 [pN:main,p:71805,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.constructive_solid_geometry:VtkBinary' +galaxy.datatypes.registry DEBUG 2024-02-23 13:02:33,743 [pN:main,p:71805,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.constructive_solid_geometry:NeperTess' +galaxy.datatypes.registry DEBUG 2024-02-23 13:02:33,743 [pN:main,p:71805,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.constructive_solid_geometry:NeperTesr' +galaxy.datatypes.registry DEBUG 2024-02-23 13:02:33,743 [pN:main,p:71805,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.constructive_solid_geometry:GmshMsh' +galaxy.datatypes.registry DEBUG 2024-02-23 13:02:33,743 [pN:main,p:71805,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.goldenpath:GoldenPath' +galaxy.datatypes.registry DEBUG 2024-02-23 13:02:33,743 [pN:main,p:71805,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.interval:ScIdx' +galaxy.datatypes.registry DEBUG 2024-02-23 13:02:33,743 [pN:main,p:71805,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.tabular:Vcf' +galaxy.datatypes.registry DEBUG 2024-02-23 13:02:33,743 [pN:main,p:71805,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.binary:JP2' +galaxy.datatypes.registry DEBUG 2024-02-23 13:02:33,743 [pN:main,p:71805,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.binary:TwoBit' +galaxy.datatypes.registry DEBUG 2024-02-23 13:02:33,743 [pN:main,p:71805,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.binary:GeminiSQLite' +galaxy.datatypes.registry DEBUG 2024-02-23 13:02:33,743 [pN:main,p:71805,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.binary:SQmass' +galaxy.datatypes.registry DEBUG 2024-02-23 13:02:33,743 [pN:main,p:71805,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.binary:MzSQlite' +galaxy.datatypes.registry DEBUG 2024-02-23 13:02:33,743 [pN:main,p:71805,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.binary:OSW' +galaxy.datatypes.registry DEBUG 2024-02-23 13:02:33,743 [pN:main,p:71805,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.binary:PQP' +galaxy.datatypes.registry DEBUG 2024-02-23 13:02:33,743 [pN:main,p:71805,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.binary:IdpDB' +galaxy.datatypes.registry DEBUG 2024-02-23 13:02:33,743 [pN:main,p:71805,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.binary:ElibSQlite' +galaxy.datatypes.registry DEBUG 2024-02-23 13:02:33,743 [pN:main,p:71805,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.binary:DlibSQlite' +galaxy.datatypes.registry DEBUG 2024-02-23 13:02:33,743 [pN:main,p:71805,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.binary:BlibSQlite' +galaxy.datatypes.registry DEBUG 2024-02-23 13:02:33,743 [pN:main,p:71805,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.binary:ChiraSQLite' +galaxy.datatypes.registry DEBUG 2024-02-23 13:02:33,743 [pN:main,p:71805,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.binary:CuffDiffSQlite' +galaxy.datatypes.registry DEBUG 2024-02-23 13:02:33,743 [pN:main,p:71805,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.binary:GAFASQLite' +galaxy.datatypes.registry DEBUG 2024-02-23 13:02:33,743 [pN:main,p:71805,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.binary:NcbiTaxonomySQlite' +galaxy.datatypes.registry DEBUG 2024-02-23 13:02:33,743 [pN:main,p:71805,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.binary:SQlite' +galaxy.datatypes.registry DEBUG 2024-02-23 13:02:33,743 [pN:main,p:71805,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.binary:H5MLM' +galaxy.datatypes.registry DEBUG 2024-02-23 13:02:33,743 [pN:main,p:71805,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.binary:Cool' +galaxy.datatypes.registry DEBUG 2024-02-23 13:02:33,744 [pN:main,p:71805,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.binary:MCool' +galaxy.datatypes.registry DEBUG 2024-02-23 13:02:33,744 [pN:main,p:71805,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.binary:Loom' +galaxy.datatypes.registry DEBUG 2024-02-23 13:02:33,744 [pN:main,p:71805,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.binary:Anndata' +galaxy.datatypes.registry DEBUG 2024-02-23 13:02:33,744 [pN:main,p:71805,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.binary:Biom2' +galaxy.datatypes.registry DEBUG 2024-02-23 13:02:33,744 [pN:main,p:71805,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.binary:HexrdMaterials' +galaxy.datatypes.registry DEBUG 2024-02-23 13:02:33,744 [pN:main,p:71805,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.binary:H5' +galaxy.datatypes.registry DEBUG 2024-02-23 13:02:33,744 [pN:main,p:71805,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.binary:Grib' +galaxy.datatypes.registry DEBUG 2024-02-23 13:02:33,744 [pN:main,p:71805,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.binary:HexrdImagesNpz' +galaxy.datatypes.registry DEBUG 2024-02-23 13:02:33,744 [pN:main,p:71805,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.binary:HexrdEtaOmeNpz' +galaxy.datatypes.registry DEBUG 2024-02-23 13:02:33,744 [pN:main,p:71805,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.binary:Npz' +galaxy.datatypes.registry DEBUG 2024-02-23 13:02:33,744 [pN:main,p:71805,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.binary:Bam' +galaxy.datatypes.registry DEBUG 2024-02-23 13:02:33,744 [pN:main,p:71805,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.binary:BamQuerynameSorted' +galaxy.datatypes.registry DEBUG 2024-02-23 13:02:33,744 [pN:main,p:71805,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.binary:BamNative' +galaxy.datatypes.registry DEBUG 2024-02-23 13:02:33,744 [pN:main,p:71805,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.binary:CRAM' +galaxy.datatypes.registry DEBUG 2024-02-23 13:02:33,744 [pN:main,p:71805,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.binary:Sff' +galaxy.datatypes.registry DEBUG 2024-02-23 13:02:33,744 [pN:main,p:71805,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.binary:Sra' +galaxy.datatypes.registry DEBUG 2024-02-23 13:02:33,744 [pN:main,p:71805,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.binary:NetCDF' +galaxy.datatypes.registry DEBUG 2024-02-23 13:02:33,744 [pN:main,p:71805,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.binary:DAA' +galaxy.datatypes.registry DEBUG 2024-02-23 13:02:33,744 [pN:main,p:71805,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.binary:RMA6' +galaxy.datatypes.registry DEBUG 2024-02-23 13:02:33,744 [pN:main,p:71805,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.binary:DMND' +galaxy.datatypes.registry DEBUG 2024-02-23 13:02:33,744 [pN:main,p:71805,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.binary:Parquet' +galaxy.datatypes.registry DEBUG 2024-02-23 13:02:33,744 [pN:main,p:71805,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.binary:BafTar' +galaxy.datatypes.registry DEBUG 2024-02-23 13:02:33,744 [pN:main,p:71805,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.binary:TdfTar' +galaxy.datatypes.registry DEBUG 2024-02-23 13:02:33,744 [pN:main,p:71805,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.binary:MassHunterTar' +galaxy.datatypes.registry DEBUG 2024-02-23 13:02:33,744 [pN:main,p:71805,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.binary:MassLynxTar' +galaxy.datatypes.registry DEBUG 2024-02-23 13:02:33,744 [pN:main,p:71805,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.binary:YepTar' +galaxy.datatypes.registry DEBUG 2024-02-23 13:02:33,745 [pN:main,p:71805,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.binary:WiffTar' +galaxy.datatypes.registry DEBUG 2024-02-23 13:02:33,745 [pN:main,p:71805,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.binary:Fast5ArchiveGz' +galaxy.datatypes.registry DEBUG 2024-02-23 13:02:33,745 [pN:main,p:71805,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.binary:Fast5ArchiveBz2' +galaxy.datatypes.registry DEBUG 2024-02-23 13:02:33,745 [pN:main,p:71805,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.binary:Fast5Archive' +galaxy.datatypes.registry DEBUG 2024-02-23 13:02:33,745 [pN:main,p:71805,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.binary:Meryldb' +galaxy.datatypes.registry DEBUG 2024-02-23 13:02:33,745 [pN:main,p:71805,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.binary:Bref3' +galaxy.datatypes.registry DEBUG 2024-02-23 13:02:33,745 [pN:main,p:71805,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.binary:PostgresqlArchive' +galaxy.datatypes.registry DEBUG 2024-02-23 13:02:33,745 [pN:main,p:71805,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.binary:ICM' +galaxy.datatypes.registry DEBUG 2024-02-23 13:02:33,745 [pN:main,p:71805,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.binary:Idat' +galaxy.datatypes.registry DEBUG 2024-02-23 13:02:33,745 [pN:main,p:71805,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.binary:Trr' +galaxy.datatypes.registry DEBUG 2024-02-23 13:02:33,745 [pN:main,p:71805,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.binary:Dcd' +galaxy.datatypes.registry DEBUG 2024-02-23 13:02:33,745 [pN:main,p:71805,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.binary:Xtc' +galaxy.datatypes.registry DEBUG 2024-02-23 13:02:33,745 [pN:main,p:71805,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.binary:Cpt' +galaxy.datatypes.registry DEBUG 2024-02-23 13:02:33,745 [pN:main,p:71805,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.binary:Edr' +galaxy.datatypes.registry DEBUG 2024-02-23 13:02:33,745 [pN:main,p:71805,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.binary:Vel' +galaxy.datatypes.registry DEBUG 2024-02-23 13:02:33,745 [pN:main,p:71805,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.binary:Xlsx' +galaxy.datatypes.registry DEBUG 2024-02-23 13:02:33,745 [pN:main,p:71805,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.qiime2:QIIME2Metadata' +galaxy.datatypes.registry DEBUG 2024-02-23 13:02:33,745 [pN:main,p:71805,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.qiime2:QIIME2Artifact' +galaxy.datatypes.registry DEBUG 2024-02-23 13:02:33,745 [pN:main,p:71805,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.qiime2:QIIME2Visualization' +galaxy.datatypes.registry DEBUG 2024-02-23 13:02:33,745 [pN:main,p:71805,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.binary:CompressedZipArchive' +galaxy.datatypes.registry DEBUG 2024-02-23 13:02:33,745 [pN:main,p:71805,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.binary:Pretext' +galaxy.datatypes.registry DEBUG 2024-02-23 13:02:33,745 [pN:main,p:71805,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.annotation:Augustus' +galaxy.datatypes.registry DEBUG 2024-02-23 13:02:33,745 [pN:main,p:71805,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.xml:Owl' +galaxy.datatypes.registry DEBUG 2024-02-23 13:02:33,745 [pN:main,p:71805,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.chain:Chain' +galaxy.datatypes.registry DEBUG 2024-02-23 13:02:33,745 [pN:main,p:71805,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.triples:Rdf' +galaxy.datatypes.registry DEBUG 2024-02-23 13:02:33,745 [pN:main,p:71805,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.blast:BlastXml' +galaxy.datatypes.registry DEBUG 2024-02-23 13:02:33,746 [pN:main,p:71805,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.images:Gifti' +galaxy.datatypes.registry DEBUG 2024-02-23 13:02:33,746 [pN:main,p:71805,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.xml:Phyloxml' +galaxy.datatypes.registry DEBUG 2024-02-23 13:02:33,746 [pN:main,p:71805,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.xml:Dzi' +galaxy.datatypes.registry DEBUG 2024-02-23 13:02:33,746 [pN:main,p:71805,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.xml:Sbml' +galaxy.datatypes.registry DEBUG 2024-02-23 13:02:33,746 [pN:main,p:71805,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.proteomics:Dta2d' +galaxy.datatypes.registry DEBUG 2024-02-23 13:02:33,746 [pN:main,p:71805,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.proteomics:Edta' +galaxy.datatypes.registry DEBUG 2024-02-23 13:02:33,746 [pN:main,p:71805,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.proteomics:ConsensusXML' +galaxy.datatypes.registry DEBUG 2024-02-23 13:02:33,746 [pN:main,p:71805,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.proteomics:IdXML' +galaxy.datatypes.registry DEBUG 2024-02-23 13:02:33,746 [pN:main,p:71805,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.proteomics:FeatureXML' +galaxy.datatypes.registry DEBUG 2024-02-23 13:02:33,746 [pN:main,p:71805,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.proteomics:MascotXML' +galaxy.datatypes.registry DEBUG 2024-02-23 13:02:33,746 [pN:main,p:71805,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.proteomics:Mgf' +galaxy.datatypes.registry DEBUG 2024-02-23 13:02:33,746 [pN:main,p:71805,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.proteomics:Ms2' +galaxy.datatypes.registry DEBUG 2024-02-23 13:02:33,746 [pN:main,p:71805,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.proteomics:Msp' +galaxy.datatypes.registry DEBUG 2024-02-23 13:02:33,746 [pN:main,p:71805,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.proteomics:MzData' +galaxy.datatypes.registry DEBUG 2024-02-23 13:02:33,746 [pN:main,p:71805,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.proteomics:MzIdentML' +galaxy.datatypes.registry DEBUG 2024-02-23 13:02:33,746 [pN:main,p:71805,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.proteomics:MzML' +galaxy.datatypes.registry DEBUG 2024-02-23 13:02:33,746 [pN:main,p:71805,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.proteomics:MzQuantML' +galaxy.datatypes.registry DEBUG 2024-02-23 13:02:33,746 [pN:main,p:71805,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.proteomics:MzTab' +galaxy.datatypes.registry DEBUG 2024-02-23 13:02:33,746 [pN:main,p:71805,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.proteomics:MzTab2' +galaxy.datatypes.registry DEBUG 2024-02-23 13:02:33,746 [pN:main,p:71805,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.proteomics:ParamXml' +galaxy.datatypes.registry DEBUG 2024-02-23 13:02:33,746 [pN:main,p:71805,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.proteomics:MzXML' +galaxy.datatypes.registry DEBUG 2024-02-23 13:02:33,746 [pN:main,p:71805,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.proteomics:NmrML' +galaxy.datatypes.registry DEBUG 2024-02-23 13:02:33,746 [pN:main,p:71805,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.proteomics:Kroenik' +galaxy.datatypes.registry DEBUG 2024-02-23 13:02:33,746 [pN:main,p:71805,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.proteomics:PepList' +galaxy.datatypes.registry DEBUG 2024-02-23 13:02:33,747 [pN:main,p:71805,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.proteomics:PSMS' +galaxy.datatypes.registry DEBUG 2024-02-23 13:02:33,747 [pN:main,p:71805,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.proteomics:PepXml' +galaxy.datatypes.registry DEBUG 2024-02-23 13:02:33,747 [pN:main,p:71805,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.proteomics:ProtXML' +galaxy.datatypes.registry DEBUG 2024-02-23 13:02:33,747 [pN:main,p:71805,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.proteomics:SPLib' +galaxy.datatypes.registry DEBUG 2024-02-23 13:02:33,747 [pN:main,p:71805,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.proteomics:TandemXML' +galaxy.datatypes.registry DEBUG 2024-02-23 13:02:33,747 [pN:main,p:71805,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.proteomics:ThermoRAW' +galaxy.datatypes.registry DEBUG 2024-02-23 13:02:33,747 [pN:main,p:71805,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.proteomics:TraML' +galaxy.datatypes.registry DEBUG 2024-02-23 13:02:33,747 [pN:main,p:71805,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.proteomics:TrafoXML' +galaxy.datatypes.registry DEBUG 2024-02-23 13:02:33,747 [pN:main,p:71805,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.proteomics:UniProtXML' +galaxy.datatypes.registry DEBUG 2024-02-23 13:02:33,747 [pN:main,p:71805,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.proteomics:XquestXML' +galaxy.datatypes.registry DEBUG 2024-02-23 13:02:33,747 [pN:main,p:71805,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.proteomics:XquestSpecXML' +galaxy.datatypes.registry DEBUG 2024-02-23 13:02:33,747 [pN:main,p:71805,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.proteomics:QCML' +galaxy.datatypes.registry DEBUG 2024-02-23 13:02:33,747 [pN:main,p:71805,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.proteomics:Wiff' +galaxy.datatypes.registry DEBUG 2024-02-23 13:02:33,747 [pN:main,p:71805,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.proteomics:PEFF' +galaxy.datatypes.registry DEBUG 2024-02-23 13:02:33,747 [pN:main,p:71805,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.molecules:CML' +galaxy.datatypes.registry DEBUG 2024-02-23 13:02:33,747 [pN:main,p:71805,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.xml:GenericXml' +galaxy.datatypes.registry DEBUG 2024-02-23 13:02:33,747 [pN:main,p:71805,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.triples:HDT' +galaxy.datatypes.registry DEBUG 2024-02-23 13:02:33,747 [pN:main,p:71805,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.triples:Turtle' +galaxy.datatypes.registry DEBUG 2024-02-23 13:02:33,747 [pN:main,p:71805,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.triples:NTriples' +galaxy.datatypes.registry DEBUG 2024-02-23 13:02:33,747 [pN:main,p:71805,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.triples:Jsonld' +galaxy.datatypes.registry DEBUG 2024-02-23 13:02:33,747 [pN:main,p:71805,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.sequence:Maf' +galaxy.datatypes.registry DEBUG 2024-02-23 13:02:33,747 [pN:main,p:71805,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.sequence:Lav' +galaxy.datatypes.registry DEBUG 2024-02-23 13:02:33,747 [pN:main,p:71805,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.sequence:MemePsp' +galaxy.datatypes.registry DEBUG 2024-02-23 13:02:33,748 [pN:main,p:71805,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.sequence:Fastg' +galaxy.datatypes.registry DEBUG 2024-02-23 13:02:33,748 [pN:main,p:71805,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.sequence:csFasta' +galaxy.datatypes.registry DEBUG 2024-02-23 13:02:33,748 [pN:main,p:71805,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.qualityscore:QualityScoreSOLiD' +galaxy.datatypes.registry DEBUG 2024-02-23 13:02:33,748 [pN:main,p:71805,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.qualityscore:QualityScore454' +galaxy.datatypes.registry DEBUG 2024-02-23 13:02:33,748 [pN:main,p:71805,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.molecules:SDF' +galaxy.datatypes.registry DEBUG 2024-02-23 13:02:33,748 [pN:main,p:71805,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.molecules:PDB' +galaxy.datatypes.registry DEBUG 2024-02-23 13:02:33,748 [pN:main,p:71805,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.molecules:Cell' +galaxy.datatypes.registry DEBUG 2024-02-23 13:02:33,748 [pN:main,p:71805,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.molecules:CIF' +galaxy.datatypes.registry DEBUG 2024-02-23 13:02:33,748 [pN:main,p:71805,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.molecules:ExtendedXYZ' +galaxy.datatypes.registry DEBUG 2024-02-23 13:02:33,748 [pN:main,p:71805,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.molecules:XYZ' +galaxy.datatypes.registry DEBUG 2024-02-23 13:02:33,748 [pN:main,p:71805,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.molecules:MOL2' +galaxy.datatypes.registry DEBUG 2024-02-23 13:02:33,748 [pN:main,p:71805,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.molecules:InChI' +galaxy.datatypes.registry DEBUG 2024-02-23 13:02:33,748 [pN:main,p:71805,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.molecules:FPS' +galaxy.datatypes.registry DEBUG 2024-02-23 13:02:33,748 [pN:main,p:71805,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.molecules:PQR' +galaxy.datatypes.registry DEBUG 2024-02-23 13:02:33,748 [pN:main,p:71805,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.molecules:GRO' +galaxy.datatypes.registry DEBUG 2024-02-23 13:02:33,748 [pN:main,p:71805,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.phylip:Phylip' +galaxy.datatypes.registry DEBUG 2024-02-23 13:02:33,748 [pN:main,p:71805,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.sequence:Fasta' +galaxy.datatypes.registry DEBUG 2024-02-23 13:02:33,748 [pN:main,p:71805,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.sequence:FastqCSSanger' +galaxy.datatypes.registry DEBUG 2024-02-23 13:02:33,748 [pN:main,p:71805,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.sequence:FastqSanger' +galaxy.datatypes.registry DEBUG 2024-02-23 13:02:33,748 [pN:main,p:71805,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.sequence:Fastq' +galaxy.datatypes.registry DEBUG 2024-02-23 13:02:33,748 [pN:main,p:71805,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.interval:Wiggle' +galaxy.datatypes.registry DEBUG 2024-02-23 13:02:33,748 [pN:main,p:71805,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.text:Html' +galaxy.datatypes.registry DEBUG 2024-02-23 13:02:33,749 [pN:main,p:71805,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.images:Pdf' +galaxy.datatypes.registry DEBUG 2024-02-23 13:02:33,749 [pN:main,p:71805,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.sequence:Axt' +galaxy.datatypes.registry DEBUG 2024-02-23 13:02:33,749 [pN:main,p:71805,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.sequence:Genbank' +galaxy.datatypes.registry DEBUG 2024-02-23 13:02:33,749 [pN:main,p:71805,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.interval:Bed' +galaxy.datatypes.registry DEBUG 2024-02-23 13:02:33,749 [pN:main,p:71805,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.interval:CustomTrack' +galaxy.datatypes.registry DEBUG 2024-02-23 13:02:33,749 [pN:main,p:71805,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.interval:Gtf' +galaxy.datatypes.registry DEBUG 2024-02-23 13:02:33,749 [pN:main,p:71805,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.interval:Gff' +galaxy.datatypes.registry DEBUG 2024-02-23 13:02:33,749 [pN:main,p:71805,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.interval:Gff3' +galaxy.datatypes.registry DEBUG 2024-02-23 13:02:33,749 [pN:main,p:71805,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.tabular:Pileup' +galaxy.datatypes.registry DEBUG 2024-02-23 13:02:33,749 [pN:main,p:71805,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.tabular:Psl' +galaxy.datatypes.registry DEBUG 2024-02-23 13:02:33,749 [pN:main,p:71805,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.text:Paf' +galaxy.datatypes.registry DEBUG 2024-02-23 13:02:33,749 [pN:main,p:71805,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.interval:Interval' +galaxy.datatypes.registry DEBUG 2024-02-23 13:02:33,749 [pN:main,p:71805,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.tabular:Sam' +galaxy.datatypes.registry DEBUG 2024-02-23 13:02:33,749 [pN:main,p:71805,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.data:Newick' +galaxy.datatypes.registry DEBUG 2024-02-23 13:02:33,749 [pN:main,p:71805,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.data:Nexus' +galaxy.datatypes.registry DEBUG 2024-02-23 13:02:33,749 [pN:main,p:71805,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.text:IQTree' +galaxy.datatypes.registry DEBUG 2024-02-23 13:02:33,749 [pN:main,p:71805,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.text:Obo' +galaxy.datatypes.registry DEBUG 2024-02-23 13:02:33,749 [pN:main,p:71805,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.text:Arff' +galaxy.datatypes.registry DEBUG 2024-02-23 13:02:33,749 [pN:main,p:71805,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.text:Ipynb' +galaxy.datatypes.registry DEBUG 2024-02-23 13:02:33,749 [pN:main,p:71805,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.text:Biom1' +galaxy.datatypes.registry DEBUG 2024-02-23 13:02:33,749 [pN:main,p:71805,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.text:ImgtJson' +galaxy.datatypes.registry DEBUG 2024-02-23 13:02:33,750 [pN:main,p:71805,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.text:GeoJson' +galaxy.datatypes.registry DEBUG 2024-02-23 13:02:33,750 [pN:main,p:71805,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.text:PithyaResult' +galaxy.datatypes.registry DEBUG 2024-02-23 13:02:33,750 [pN:main,p:71805,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.text:BCSLts' +galaxy.datatypes.registry DEBUG 2024-02-23 13:02:33,750 [pN:main,p:71805,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.text:Json' +galaxy.datatypes.registry DEBUG 2024-02-23 13:02:33,750 [pN:main,p:71805,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.genetics:GenotypeMatrix' +galaxy.datatypes.registry DEBUG 2024-02-23 13:02:33,750 [pN:main,p:71805,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.genetics:DataIn' +galaxy.datatypes.registry DEBUG 2024-02-23 13:02:33,750 [pN:main,p:71805,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.genetics:MarkerMap' +galaxy.datatypes.registry DEBUG 2024-02-23 13:02:33,750 [pN:main,p:71805,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.genetics:AllegroLOD' +galaxy.datatypes.registry DEBUG 2024-02-23 13:02:33,750 [pN:main,p:71805,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.sequence:RNADotPlotMatrix' +galaxy.datatypes.registry DEBUG 2024-02-23 13:02:33,750 [pN:main,p:71805,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.sequence:DotBracket' +galaxy.datatypes.registry DEBUG 2024-02-23 13:02:33,750 [pN:main,p:71805,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.tabular:CMAP' +galaxy.datatypes.registry DEBUG 2024-02-23 13:02:33,750 [pN:main,p:71805,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.tabular:ConnectivityTable' +galaxy.datatypes.registry DEBUG 2024-02-23 13:02:33,750 [pN:main,p:71805,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.tabular:CSV' +galaxy.datatypes.registry DEBUG 2024-02-23 13:02:33,750 [pN:main,p:71805,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.metacyto:mSummary' +galaxy.datatypes.registry DEBUG 2024-02-23 13:02:33,750 [pN:main,p:71805,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.metacyto:mStats' +galaxy.datatypes.registry DEBUG 2024-02-23 13:02:33,750 [pN:main,p:71805,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.tabular:TSV' +galaxy.datatypes.registry DEBUG 2024-02-23 13:02:33,750 [pN:main,p:71805,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.tabular:MatrixMarket' +galaxy.datatypes.registry DEBUG 2024-02-23 13:02:33,750 [pN:main,p:71805,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.msa:Hmmer2' +galaxy.datatypes.registry DEBUG 2024-02-23 13:02:33,750 [pN:main,p:71805,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.msa:Hmmer3' +galaxy.datatypes.registry DEBUG 2024-02-23 13:02:33,750 [pN:main,p:71805,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.msa:Stockholm_1_0' +galaxy.datatypes.registry DEBUG 2024-02-23 13:02:33,751 [pN:main,p:71805,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.msa:MauveXmfa' +galaxy.datatypes.registry DEBUG 2024-02-23 13:02:33,751 [pN:main,p:71805,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.msa:InfernalCM' +galaxy.datatypes.registry DEBUG 2024-02-23 13:02:33,751 [pN:main,p:71805,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.annotation:SnapHmm' +galaxy.datatypes.registry DEBUG 2024-02-23 13:02:33,751 [pN:main,p:71805,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.microarrays:Cel' +galaxy.datatypes.registry DEBUG 2024-02-23 13:02:33,751 [pN:main,p:71805,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.microarrays:Gpr' +galaxy.datatypes.registry DEBUG 2024-02-23 13:02:33,751 [pN:main,p:71805,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.microarrays:Gal' +galaxy.datatypes.registry DEBUG 2024-02-23 13:02:33,751 [pN:main,p:71805,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.binary:RData' +galaxy.datatypes.registry DEBUG 2024-02-23 13:02:33,751 [pN:main,p:71805,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.binary:RDS' +galaxy.datatypes.registry DEBUG 2024-02-23 13:02:33,751 [pN:main,p:71805,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.images:Mrc2014' +galaxy.datatypes.registry DEBUG 2024-02-23 13:02:33,751 [pN:main,p:71805,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.images:Jpg' +galaxy.datatypes.registry DEBUG 2024-02-23 13:02:33,751 [pN:main,p:71805,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.images:Png' +galaxy.datatypes.registry DEBUG 2024-02-23 13:02:33,751 [pN:main,p:71805,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.images:OMETiff' +galaxy.datatypes.registry DEBUG 2024-02-23 13:02:33,751 [pN:main,p:71805,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.images:Tiff' +galaxy.datatypes.registry DEBUG 2024-02-23 13:02:33,751 [pN:main,p:71805,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.images:Bmp' +galaxy.datatypes.registry DEBUG 2024-02-23 13:02:33,751 [pN:main,p:71805,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.images:Gif' +galaxy.datatypes.registry DEBUG 2024-02-23 13:02:33,751 [pN:main,p:71805,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.images:Im' +galaxy.datatypes.registry DEBUG 2024-02-23 13:02:33,751 [pN:main,p:71805,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.images:Pcd' +galaxy.datatypes.registry DEBUG 2024-02-23 13:02:33,751 [pN:main,p:71805,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.images:Pcx' +galaxy.datatypes.registry DEBUG 2024-02-23 13:02:33,751 [pN:main,p:71805,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.images:Ppm' +galaxy.datatypes.registry DEBUG 2024-02-23 13:02:33,751 [pN:main,p:71805,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.images:Psd' +galaxy.datatypes.registry DEBUG 2024-02-23 13:02:33,752 [pN:main,p:71805,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.images:Xbm' +galaxy.datatypes.registry DEBUG 2024-02-23 13:02:33,752 [pN:main,p:71805,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.images:Rgb' +galaxy.datatypes.registry DEBUG 2024-02-23 13:02:33,752 [pN:main,p:71805,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.images:Pbm' +galaxy.datatypes.registry DEBUG 2024-02-23 13:02:33,752 [pN:main,p:71805,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.images:Pgm' +galaxy.datatypes.registry DEBUG 2024-02-23 13:02:33,752 [pN:main,p:71805,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.images:Xpm' +galaxy.datatypes.registry DEBUG 2024-02-23 13:02:33,752 [pN:main,p:71805,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.images:Eps' +galaxy.datatypes.registry DEBUG 2024-02-23 13:02:33,752 [pN:main,p:71805,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.images:Rast' +galaxy.datatypes.registry DEBUG 2024-02-23 13:02:33,752 [pN:main,p:71805,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.images:Tck' +galaxy.datatypes.registry DEBUG 2024-02-23 13:02:33,752 [pN:main,p:71805,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.images:Trk' +galaxy.datatypes.registry DEBUG 2024-02-23 13:02:33,752 [pN:main,p:71805,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.images:Nifti1' +galaxy.datatypes.registry DEBUG 2024-02-23 13:02:33,752 [pN:main,p:71805,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.images:Nifti2' +galaxy.datatypes.registry DEBUG 2024-02-23 13:02:33,752 [pN:main,p:71805,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.images:Star' +galaxy.datatypes.registry DEBUG 2024-02-23 13:02:33,752 [pN:main,p:71805,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.media:Wav' +galaxy.datatypes.registry DEBUG 2024-02-23 13:02:33,752 [pN:main,p:71805,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.media:Mkv' +galaxy.datatypes.registry DEBUG 2024-02-23 13:02:33,752 [pN:main,p:71805,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.media:Mp3' +galaxy.datatypes.registry DEBUG 2024-02-23 13:02:33,752 [pN:main,p:71805,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.media:Mp4' +galaxy.datatypes.registry DEBUG 2024-02-23 13:02:33,752 [pN:main,p:71805,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.media:Flv' +galaxy.datatypes.registry DEBUG 2024-02-23 13:02:33,752 [pN:main,p:71805,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.media:Mpg' +galaxy.datatypes.registry DEBUG 2024-02-23 13:02:33,752 [pN:main,p:71805,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.speech:TextGrid' +galaxy.datatypes.registry DEBUG 2024-02-23 13:02:33,752 [pN:main,p:71805,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.speech:BPF' +galaxy.datatypes.registry DEBUG 2024-02-23 13:02:33,753 [pN:main,p:71805,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.larch:FEFFInput' +galaxy.datatypes.registry DEBUG 2024-02-23 13:02:33,753 [pN:main,p:71805,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.larch:AthenaProject' +galaxy.datatypes.registry DEBUG 2024-02-23 13:02:33,753 [pN:main,p:71805,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.text:Castep' +galaxy.datatypes.registry DEBUG 2024-02-23 13:02:33,753 [pN:main,p:71805,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.text:CTLresult' +galaxy.datatypes.registry DEBUG 2024-02-23 13:02:33,753 [pN:main,p:71805,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.text:FormattedDensity' +galaxy.datatypes.registry DEBUG 2024-02-23 13:02:33,753 [pN:main,p:71805,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.text:Param' +galaxy.datatypes.registry DEBUG 2024-02-23 13:02:33,753 [pN:main,p:71805,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.text:Yaml' +galaxy.datatypes.registry DEBUG 2024-02-23 13:02:33,753 [pN:main,p:71805,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.binary:OxliCountGraph' +galaxy.datatypes.registry DEBUG 2024-02-23 13:02:33,753 [pN:main,p:71805,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.binary:OxliNodeGraph' +galaxy.datatypes.registry DEBUG 2024-02-23 13:02:33,753 [pN:main,p:71805,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.binary:OxliTagSet' +galaxy.datatypes.registry DEBUG 2024-02-23 13:02:33,753 [pN:main,p:71805,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.binary:OxliStopTags' +galaxy.datatypes.registry DEBUG 2024-02-23 13:02:33,753 [pN:main,p:71805,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.binary:OxliSubset' +galaxy.datatypes.registry DEBUG 2024-02-23 13:02:33,753 [pN:main,p:71805,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.binary:OxliGraphLabels' +galaxy.datatypes.registry DEBUG 2024-02-23 13:02:33,753 [pN:main,p:71805,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.binary:FITS' +galaxy.datatypes.registry DEBUG 2024-02-23 13:02:33,753 [pN:main,p:71805,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.neo4j:Neo4jDBzip' +galaxy.datatypes.registry DEBUG 2024-02-23 13:02:33,753 [pN:main,p:71805,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.text:PithyaProperty' +galaxy.datatypes.registry DEBUG 2024-02-23 13:02:33,753 [pN:main,p:71805,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.text:PithyaModel' +galaxy.datatypes.registry DEBUG 2024-02-23 13:02:33,753 [pN:main,p:71805,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.text:BCSLmodel' +galaxy.datatypes.registry DEBUG 2024-02-23 13:02:33,754 [pN:main,p:71805,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.text:StormSample' +galaxy.datatypes.registry DEBUG 2024-02-23 13:02:33,754 [pN:main,p:71805,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.text:StormCheck' +galaxy.datatypes.registry DEBUG 2024-02-23 13:02:33,756 [pN:main,p:71805,tN:MainThread] Build site file [tool-data/shared/ucsc/ucsc_build_sites.txt] not found using sample [tool-data/shared/ucsc/ucsc_build_sites.txt.sample]. +galaxy.datatypes.registry DEBUG 2024-02-23 13:02:33,756 [pN:main,p:71805,tN:MainThread] Loaded build site 'ucsc': tool-data/shared/ucsc/ucsc_build_sites.txt.sample with display sites: ['main', 'test', 'archaea', 'ucla'] +galaxy.datatypes.registry DEBUG 2024-02-23 13:02:33,757 [pN:main,p:71805,tN:MainThread] Loaded build site 'gbrowse': tool-data/shared/gbrowse/gbrowse_build_sites.txt with display sites: ['modencode', 'sgd_yeast', 'tair', 'wormbase', 'wormbase_ws120', 'wormbase_ws140', 'wormbase_ws170', 'wormbase_ws180', 'wormbase_ws190', 'wormbase_ws200', 'wormbase_ws204', 'wormbase_ws210', 'wormbase_ws220', 'wormbase_ws225'] +galaxy.datatypes.registry DEBUG 2024-02-23 13:02:33,757 [pN:main,p:71805,tN:MainThread] Loaded build site 'ensembl': tool-data/shared/ensembl/ensembl_sites.txt +galaxy.datatypes.registry DEBUG 2024-02-23 13:02:33,757 [pN:main,p:71805,tN:MainThread] Loaded build site 'ensembl_data_url': tool-data/shared/ensembl/ensembl_sites_data_URL.txt +galaxy.datatypes.registry DEBUG 2024-02-23 13:02:33,757 [pN:main,p:71805,tN:MainThread] Build site file [tool-data/shared/igv/igv_build_sites.txt] not found using sample [tool-data/shared/igv/igv_build_sites.txt.sample]. +galaxy.datatypes.registry DEBUG 2024-02-23 13:02:33,757 [pN:main,p:71805,tN:MainThread] Loaded build site 'igv': tool-data/shared/igv/igv_build_sites.txt.sample +galaxy.datatypes.registry DEBUG 2024-02-23 13:02:33,757 [pN:main,p:71805,tN:MainThread] Build site file [tool-data/shared/rviewer/rviewer_build_sites.txt] not found using sample [tool-data/shared/rviewer/rviewer_build_sites.txt.sample]. +galaxy.datatypes.registry DEBUG 2024-02-23 13:02:33,757 [pN:main,p:71805,tN:MainThread] Loaded build site 'rviewer': tool-data/shared/rviewer/rviewer_build_sites.txt.sample +galaxy.util.tool_shed.tool_shed_registry DEBUG 2024-02-23 13:02:33,757 [pN:main,p:71805,tN:MainThread] Loading references to tool sheds from /tmp/tmpup6p245_/tool_sheds_conf.xml +galaxy.util.tool_shed.tool_shed_registry DEBUG 2024-02-23 13:02:33,757 [pN:main,p:71805,tN:MainThread] Loaded reference to tool shed: Target Shed +galaxy.queue_worker INFO 2024-02-23 13:02:33,758 [pN:main,p:71805,tN:MainThread] Initializing main Galaxy Queue Worker on sqlalchemy+sqlite:////tmp/tmpup6p245_/galaxy.sqlite?isolation_level=IMMEDIATE +galaxy.tool_util.data WARNING 2024-02-23 13:02:33,764 [pN:main,p:71805,tN:MainThread] Cannot find index file '/scratch/rico/galaxytools/tools/ncbi_fcs_adaptor/test-data/ncbi_fcs_adaptor_config.tsv' for tool data table 'ncbi_fcs_adaptor_config' +galaxy.tool_util.data DEBUG 2024-02-23 13:02:33,764 [pN:main,p:71805,tN:MainThread] Loaded tool data table 'ncbi_fcs_adaptor_config' from file '/scratch/rico/galaxytools/tools/ncbi_fcs_adaptor/tool_data_table_conf.xml.test' +galaxy.tool_util.data WARNING 2024-02-23 13:02:33,765 [pN:main,p:71805,tN:MainThread] Cannot find index file '/scratch/rico/galaxytools/tools/ncbi_fcs_adaptor/test-data/ncbi_fcs_adaptor_databases.loc' for tool data table 'ncbi_fcs_adaptor_databases' +galaxy.tool_util.data DEBUG 2024-02-23 13:02:33,765 [pN:main,p:71805,tN:MainThread] Loaded tool data table 'ncbi_fcs_adaptor_databases' from file '/scratch/rico/galaxytools/tools/ncbi_fcs_adaptor/tool_data_table_conf.xml.test' +galaxy.tool_util.data WARNING 2024-02-23 13:02:33,765 [pN:main,p:71805,tN:MainThread] Cannot find index file '/scratch/rico/galaxytools/tools/ncbi_fcs_adaptor/test-data/ncbi_fcs_adaptor_divisions.tsv' for tool data table 'ncbi_fcs_adaptor_divisions' +galaxy.tool_util.data DEBUG 2024-02-23 13:02:33,765 [pN:main,p:71805,tN:MainThread] Loaded tool data table 'ncbi_fcs_adaptor_divisions' from file '/scratch/rico/galaxytools/tools/ncbi_fcs_adaptor/tool_data_table_conf.xml.test' +galaxy.visualization.genomes ERROR 2024-02-23 13:02:33,768 [pN:main,p:71805,tN:MainThread] Error reading twobit.loc +Traceback (most recent call last): + File "/scratch/rico/galaxy/lib/galaxy/visualization/genomes.py", line 220, in reload_genomes + with open(twobit_path) as f: +FileNotFoundError: [Errno 2] No such file or directory: '/scratch/rico/galaxy/tool-data/twobit.loc' +galaxy.util WARNING 2024-02-23 13:02:33,907 [pN:main,p:71805,tN:MainThread] directory not found: /scratch/rico/galaxy/lib/galaxy/util/../../../config/plugins/activities +galaxy.tools WARNING 2024-02-23 13:02:33,907 [pN:main,p:71805,tN:MainThread] The default shed tool config file (/tmp/tmpup6p245_/shed_tool_conf.xml) has been added to the tool_config_file option, if this is not the desired behavior, please set shed_tool_config_file to your primary shed-enabled tool config file +galaxy.tool_util.toolbox.base INFO 2024-02-23 13:02:33,907 [pN:main,p:71805,tN:MainThread] Parsing the tool configuration /tmp/tmpup6p245_/tool_conf.xml +galaxy.tool_util.toolbox.base DEBUG 2024-02-23 13:02:33,908 [pN:main,p:71805,tN:MainThread] Tool path for tool configuration /tmp/tmpup6p245_/tool_conf.xml is None +galaxy.tool_util.toolbox.base DEBUG 2024-02-23 13:02:33,913 [pN:main,p:71805,tN:MainThread] Loaded tool id: upload1, version: 1.1.7 into tool panel.. +galaxy.tool_util.toolbox.base DEBUG 2024-02-23 13:02:33,915 [pN:main,p:71805,tN:MainThread] Loaded tool id: ncbi_fcs_adaptor, version: 0.5.0+galaxy0 into tool panel.. +galaxy.tools WARNING 2024-02-23 13:02:33,915 [pN:main,p:71805,tN:MainThread] The default shed tool config file (/tmp/tmpup6p245_/shed_tool_conf.xml) has been added to the tool_config_file option, if this is not the desired behavior, please set shed_tool_config_file to your primary shed-enabled tool config file +galaxy.tool_util.toolbox.base INFO 2024-02-23 13:02:33,915 [pN:main,p:71805,tN:MainThread] Parsing the tool configuration /tmp/tmpup6p245_/shed_tools_conf.xml +galaxy.tool_util.toolbox.base DEBUG 2024-02-23 13:02:33,915 [pN:main,p:71805,tN:MainThread] Tool path for shed tool configuration /tmp/tmpup6p245_/shed_tools_conf.xml is /tmp/tmpup6p245_/shed_tools +galaxy.tools WARNING 2024-02-23 13:02:33,916 [pN:main,p:71805,tN:MainThread] The default shed tool config file (/tmp/tmpup6p245_/shed_tool_conf.xml) has been added to the tool_config_file option, if this is not the desired behavior, please set shed_tool_config_file to your primary shed-enabled tool config file +galaxy.tool_util.toolbox.base INFO 2024-02-23 13:02:33,916 [pN:main,p:71805,tN:MainThread] Parsing the tool configuration /tmp/tmpup6p245_/empty_tool_conf.xml +galaxy.tool_util.toolbox.base DEBUG 2024-02-23 13:02:33,916 [pN:main,p:71805,tN:MainThread] Tool path for tool configuration /tmp/tmpup6p245_/empty_tool_conf.xml is None +galaxy.tool_util.toolbox.base DEBUG 2024-02-23 13:02:33,916 [pN:main,p:71805,tN:MainThread] Reading tools from config files finished (8.666 ms) +galaxy.tool_util.toolbox.base DEBUG 2024-02-23 13:02:33,917 [pN:main,p:71805,tN:MainThread] Loaded tool id: upload1, version: 1.1.7 into tool panel.. +galaxy.tool_util.toolbox.views.edam DEBUG 2024-02-23 13:02:33,917 [pN:main,p:71805,tN:MainThread] Loading EDAM tool panel finished (0.908 ms) +galaxy.tool_util.toolbox.base DEBUG 2024-02-23 13:02:33,918 [pN:main,p:71805,tN:MainThread] Loaded tool id: upload1, version: 1.1.7 into tool panel.. +galaxy.tool_util.toolbox.views.edam DEBUG 2024-02-23 13:02:33,918 [pN:main,p:71805,tN:MainThread] Loading EDAM tool panel finished (0.790 ms) +galaxy.tool_util.toolbox.integrated_panel DEBUG 2024-02-23 13:02:33,918 [pN:main,p:71805,tN:MainThread] Writing integrated tool panel config file to '/tmp/tmpup6p245_/integrated_tool_panel_conf.xml' +galaxy.util ERROR 2024-02-23 13:02:34,350 [pN:main,p:71805,tN:MainThread] Error parsing file /tmp/tmpup6p245_ +Traceback (most recent call last): + File "/scratch/rico/galaxy/lib/galaxy/util/__init__.py", line 305, in parse_xml + tree = etree.parse(str(fname), parser=parser) + File "src/lxml/etree.pyx", line 3541, in lxml.etree.parse + File "src/lxml/parser.pxi", line 1879, in lxml.etree._parseDocument + File "src/lxml/parser.pxi", line 1905, in lxml.etree._parseDocumentFromURL + File "src/lxml/parser.pxi", line 1808, in lxml.etree._parseDocFromFile + File "src/lxml/parser.pxi", line 1180, in lxml.etree._BaseParser._parseDocFromFile + File "src/lxml/parser.pxi", line 618, in lxml.etree._ParserContext._handleParseResultDoc + File "src/lxml/parser.pxi", line 728, in lxml.etree._handleParseResult + File "src/lxml/parser.pxi", line 657, in lxml.etree._raiseParseError + File "/tmp/tmpup6p245_", line 1 +lxml.etree.XMLSyntaxError: Document is empty, line 1, column 1 +galaxy.tools.data_manager.manager ERROR 2024-02-23 13:02:34,350 [pN:main,p:71805,tN:MainThread] There was an error parsing your Data Manager config file "/tmp/tmpup6p245_": Document is empty, line 1, column 1 (tmpup6p245_, line 1) +galaxy.datatypes.registry DEBUG 2024-02-23 13:02:34,352 [pN:main,p:71805,tN:MainThread] Loaded display application 'ucsc_bam' for datatype 'bam', inherit=False. +galaxy.datatypes.registry DEBUG 2024-02-23 13:02:34,353 [pN:main,p:71805,tN:MainThread] Loaded display application 'ensembl_bam' for datatype 'bam', inherit=False. +galaxy.datatypes.display_applications.application ERROR 2024-02-23 13:02:34,353 [pN:main,p:71805,tN:MainThread] Error loading a set of Dynamic Display Application links: Unable to find data table named "igv_broad_genomes". +galaxy.datatypes.registry DEBUG 2024-02-23 13:02:34,355 [pN:main,p:71805,tN:MainThread] Loaded display application 'igv_bam' for datatype 'bam', inherit=False. +galaxy.datatypes.registry DEBUG 2024-02-23 13:02:34,355 [pN:main,p:71805,tN:MainThread] Loaded display application 'igb_bam' for datatype 'bam', inherit=False. +galaxy.datatypes.display_applications.application ERROR 2024-02-23 13:02:34,356 [pN:main,p:71805,tN:MainThread] Error loading a set of Dynamic Display Application links: Unable to find data table named "bam_iobio". +galaxy.datatypes.registry DEBUG 2024-02-23 13:02:34,356 [pN:main,p:71805,tN:MainThread] Loaded display application 'iobio_bam' for datatype 'bam', inherit=False. +galaxy.datatypes.registry DEBUG 2024-02-23 13:02:34,356 [pN:main,p:71805,tN:MainThread] Loaded display application 'igb_bed' for datatype 'bed', inherit=False. +galaxy.datatypes.registry DEBUG 2024-02-23 13:02:34,356 [pN:main,p:71805,tN:MainThread] Loaded display application 'igb_bedgraph' for datatype 'bedgraph', inherit=False. +galaxy.datatypes.registry DEBUG 2024-02-23 13:02:34,357 [pN:main,p:71805,tN:MainThread] Loaded display application 'ucsc_bigbed' for datatype 'bigbed', inherit=False. +galaxy.datatypes.registry DEBUG 2024-02-23 13:02:34,357 [pN:main,p:71805,tN:MainThread] Loaded display application 'igb_bb' for datatype 'bigbed', inherit=False. +galaxy.datatypes.registry DEBUG 2024-02-23 13:02:34,358 [pN:main,p:71805,tN:MainThread] Loaded display application 'ucsc_bigwig' for datatype 'bigwig', inherit=False. +galaxy.datatypes.registry DEBUG 2024-02-23 13:02:34,358 [pN:main,p:71805,tN:MainThread] Loaded display application 'igb_bigwig' for datatype 'bigwig', inherit=False. +galaxy.datatypes.registry DEBUG 2024-02-23 13:02:34,358 [pN:main,p:71805,tN:MainThread] Loaded display application 'igv_bigwig' for datatype 'bigwig', inherit=False. +galaxy.datatypes.display_applications.application ERROR 2024-02-23 13:02:34,358 [pN:main,p:71805,tN:MainThread] Error loading a set of Dynamic Display Application links: Unable to find data table named "intermine_simple_display". +galaxy.datatypes.registry DEBUG 2024-02-23 13:02:34,358 [pN:main,p:71805,tN:MainThread] Loaded display application 'intermine_simple' for datatype 'intermine_tabular', inherit=False. +galaxy.datatypes.display_applications.application ERROR 2024-02-23 13:02:34,359 [pN:main,p:71805,tN:MainThread] Error loading a set of Dynamic Display Application links: Unable to find data table named "igv_broad_genomes". +galaxy.datatypes.registry DEBUG 2024-02-23 13:02:34,359 [pN:main,p:71805,tN:MainThread] Loaded display application 'igv_fasta' for datatype 'fasta', inherit=True. +galaxy.datatypes.registry DEBUG 2024-02-23 13:02:34,360 [pN:main,p:71805,tN:MainThread] Loaded display application 'ensembl_gff' for datatype 'gff', inherit=True. +galaxy.datatypes.display_applications.application ERROR 2024-02-23 13:02:34,360 [pN:main,p:71805,tN:MainThread] Error loading a set of Dynamic Display Application links: Unable to find data table named "igv_broad_genomes". +galaxy.datatypes.registry DEBUG 2024-02-23 13:02:34,360 [pN:main,p:71805,tN:MainThread] Loaded display application 'igv_gff' for datatype 'gff', inherit=True. +galaxy.datatypes.registry DEBUG 2024-02-23 13:02:34,361 [pN:main,p:71805,tN:MainThread] Loaded display application 'igb_gtf' for datatype 'gtf', inherit=False. +galaxy.datatypes.registry DEBUG 2024-02-23 13:02:34,361 [pN:main,p:71805,tN:MainThread] Loaded display application 'ensembl_interval' for datatype 'interval', inherit=True. +galaxy.datatypes.registry DEBUG 2024-02-23 13:02:34,362 [pN:main,p:71805,tN:MainThread] Loaded display application 'gbrowse_interval_as_bed' for datatype 'interval', inherit=True. +galaxy.datatypes.registry DEBUG 2024-02-23 13:02:34,362 [pN:main,p:71805,tN:MainThread] Loaded display application 'rviewer_interval' for datatype 'interval', inherit=True. +galaxy.datatypes.display_applications.application ERROR 2024-02-23 13:02:34,363 [pN:main,p:71805,tN:MainThread] Error loading a set of Dynamic Display Application links: Unable to find data table named "igv_broad_genomes". +galaxy.datatypes.registry DEBUG 2024-02-23 13:02:34,363 [pN:main,p:71805,tN:MainThread] Loaded display application 'igv_interval_as_bed' for datatype 'interval', inherit=True. +galaxy.datatypes.registry DEBUG 2024-02-23 13:02:34,363 [pN:main,p:71805,tN:MainThread] Loaded display application 'avivator' for datatype 'ome.tiff', inherit=False. +galaxy.datatypes.display_applications.application ERROR 2024-02-23 13:02:34,363 [pN:main,p:71805,tN:MainThread] Error loading a set of Dynamic Display Application links: Unable to find data table named "q2view_display". +galaxy.datatypes.registry DEBUG 2024-02-23 13:02:34,363 [pN:main,p:71805,tN:MainThread] Loaded display application 'q2view' for datatype 'qza', inherit=False. +galaxy.datatypes.display_applications.application ERROR 2024-02-23 13:02:34,364 [pN:main,p:71805,tN:MainThread] Error loading a set of Dynamic Display Application links: Unable to find data table named "q2view_display". +galaxy.datatypes.registry DEBUG 2024-02-23 13:02:34,364 [pN:main,p:71805,tN:MainThread] Loaded display application 'q2view' for datatype 'qzv', inherit=False. +galaxy.datatypes.registry DEBUG 2024-02-23 13:02:34,364 [pN:main,p:71805,tN:MainThread] Loaded display application 'ucsc_maf_customtrack' for datatype 'mafcustomtrack', inherit=False. +galaxy.datatypes.registry DEBUG 2024-02-23 13:02:34,364 [pN:main,p:71805,tN:MainThread] Loaded display application 'minerva_tabular' for datatype 'tabular', inherit=False. +galaxy.datatypes.registry DEBUG 2024-02-23 13:02:34,365 [pN:main,p:71805,tN:MainThread] Loaded display application 'ucsc_vcf' for datatype 'vcf', inherit=False. +galaxy.datatypes.display_applications.application ERROR 2024-02-23 13:02:34,365 [pN:main,p:71805,tN:MainThread] Error loading a set of Dynamic Display Application links: Unable to find data table named "igv_broad_genomes". +galaxy.datatypes.registry DEBUG 2024-02-23 13:02:34,365 [pN:main,p:71805,tN:MainThread] Loaded display application 'igv_vcf' for datatype 'vcf', inherit=False. +galaxy.datatypes.registry DEBUG 2024-02-23 13:02:34,365 [pN:main,p:71805,tN:MainThread] Loaded display application 'rviewer_vcf' for datatype 'vcf', inherit=True. +galaxy.datatypes.display_applications.application ERROR 2024-02-23 13:02:34,366 [pN:main,p:71805,tN:MainThread] Error loading a set of Dynamic Display Application links: Unable to find data table named "vcf_iobio". +galaxy.datatypes.registry DEBUG 2024-02-23 13:02:34,366 [pN:main,p:71805,tN:MainThread] Loaded display application 'iobio_vcf' for datatype 'vcf', inherit=False. +galaxy.datatypes.registry DEBUG 2024-02-23 13:02:34,366 [pN:main,p:71805,tN:MainThread] Loaded display application 'igb_wig' for datatype 'wig', inherit=False. +galaxy.datatypes.display_applications.application ERROR 2024-02-23 13:02:34,366 [pN:main,p:71805,tN:MainThread] Error loading a set of Dynamic Display Application links: Unable to find data table named "igv_broad_genomes". +galaxy.datatypes.registry DEBUG 2024-02-23 13:02:34,366 [pN:main,p:71805,tN:MainThread] Loaded display application 'igv_vcf' for datatype 'vcf_bgzip', inherit=False. +galaxy.datatypes.display_applications.application ERROR 2024-02-23 13:02:34,367 [pN:main,p:71805,tN:MainThread] Error loading a set of Dynamic Display Application links: Unable to find data table named "igv_broad_genomes". +galaxy.datatypes.registry DEBUG 2024-02-23 13:02:34,367 [pN:main,p:71805,tN:MainThread] Loaded display application 'igv_genbank' for datatype 'genbank', inherit=False. +galaxy.datatypes.display_applications.application ERROR 2024-02-23 13:02:34,367 [pN:main,p:71805,tN:MainThread] Error loading a set of Dynamic Display Application links: Unable to find data table named "biom_simple_display". +galaxy.datatypes.registry DEBUG 2024-02-23 13:02:34,367 [pN:main,p:71805,tN:MainThread] Loaded display application 'biom_simple' for datatype 'biom1', inherit=False. +galaxy.datatypes.display_applications.application ERROR 2024-02-23 13:02:34,367 [pN:main,p:71805,tN:MainThread] Error loading a set of Dynamic Display Application links: Unable to find data table named "icn3d_simple_display". +galaxy.datatypes.registry DEBUG 2024-02-23 13:02:34,367 [pN:main,p:71805,tN:MainThread] Loaded display application 'icn3d_simple' for datatype 'sdf', inherit=False. +galaxy.datatypes.display_applications.application ERROR 2024-02-23 13:02:34,367 [pN:main,p:71805,tN:MainThread] Error loading a set of Dynamic Display Application links: Unable to find data table named "icn3d_simple_display". +galaxy.datatypes.registry DEBUG 2024-02-23 13:02:34,367 [pN:main,p:71805,tN:MainThread] Loaded display application 'icn3d_simple' for datatype 'mol2', inherit=False. +galaxy.datatypes.display_applications.application ERROR 2024-02-23 13:02:34,367 [pN:main,p:71805,tN:MainThread] Error loading a set of Dynamic Display Application links: Unable to find data table named "icn3d_simple_display". +galaxy.datatypes.registry DEBUG 2024-02-23 13:02:34,367 [pN:main,p:71805,tN:MainThread] Loaded display application 'icn3d_simple' for datatype 'pdb', inherit=False. +galaxy.datatypes.registry DEBUG 2024-02-23 13:02:34,368 [pN:main,p:71805,tN:MainThread] Loaded display application 'ucsc_trackhub' for datatype 'trackhub', inherit=False. +galaxy.datatypes.registry DEBUG 2024-02-23 13:02:34,368 [pN:main,p:71805,tN:MainThread] Adding inherited display application 'ensembl_interval' to datatype 'bed' +galaxy.datatypes.registry DEBUG 2024-02-23 13:02:34,368 [pN:main,p:71805,tN:MainThread] Adding inherited display application 'gbrowse_interval_as_bed' to datatype 'bed' +galaxy.datatypes.registry DEBUG 2024-02-23 13:02:34,368 [pN:main,p:71805,tN:MainThread] Adding inherited display application 'rviewer_interval' to datatype 'bed' +galaxy.datatypes.registry DEBUG 2024-02-23 13:02:34,368 [pN:main,p:71805,tN:MainThread] Adding inherited display application 'igv_interval_as_bed' to datatype 'bed' +galaxy.datatypes.registry DEBUG 2024-02-23 13:02:34,368 [pN:main,p:71805,tN:MainThread] Adding inherited display application 'ensembl_interval' to datatype 'bedgraph' +galaxy.datatypes.registry DEBUG 2024-02-23 13:02:34,368 [pN:main,p:71805,tN:MainThread] Adding inherited display application 'gbrowse_interval_as_bed' to datatype 'bedgraph' +galaxy.datatypes.registry DEBUG 2024-02-23 13:02:34,368 [pN:main,p:71805,tN:MainThread] Adding inherited display application 'rviewer_interval' to datatype 'bedgraph' +galaxy.datatypes.registry DEBUG 2024-02-23 13:02:34,368 [pN:main,p:71805,tN:MainThread] Adding inherited display application 'igv_interval_as_bed' to datatype 'bedgraph' +galaxy.datatypes.registry DEBUG 2024-02-23 13:02:34,368 [pN:main,p:71805,tN:MainThread] Adding inherited display application 'ensembl_interval' to datatype 'bedstrict' +galaxy.datatypes.registry DEBUG 2024-02-23 13:02:34,368 [pN:main,p:71805,tN:MainThread] Adding inherited display application 'gbrowse_interval_as_bed' to datatype 'bedstrict' +galaxy.datatypes.registry DEBUG 2024-02-23 13:02:34,368 [pN:main,p:71805,tN:MainThread] Adding inherited display application 'rviewer_interval' to datatype 'bedstrict' +galaxy.datatypes.registry DEBUG 2024-02-23 13:02:34,368 [pN:main,p:71805,tN:MainThread] Adding inherited display application 'igv_interval_as_bed' to datatype 'bedstrict' +galaxy.datatypes.registry DEBUG 2024-02-23 13:02:34,368 [pN:main,p:71805,tN:MainThread] Adding inherited display application 'ensembl_interval' to datatype 'bed6' +galaxy.datatypes.registry DEBUG 2024-02-23 13:02:34,368 [pN:main,p:71805,tN:MainThread] Adding inherited display application 'gbrowse_interval_as_bed' to datatype 'bed6' +galaxy.datatypes.registry DEBUG 2024-02-23 13:02:34,368 [pN:main,p:71805,tN:MainThread] Adding inherited display application 'rviewer_interval' to datatype 'bed6' +galaxy.datatypes.registry DEBUG 2024-02-23 13:02:34,368 [pN:main,p:71805,tN:MainThread] Adding inherited display application 'igv_interval_as_bed' to datatype 'bed6' +galaxy.datatypes.registry DEBUG 2024-02-23 13:02:34,368 [pN:main,p:71805,tN:MainThread] Adding inherited display application 'ensembl_interval' to datatype 'bed12' +galaxy.datatypes.registry DEBUG 2024-02-23 13:02:34,368 [pN:main,p:71805,tN:MainThread] Adding inherited display application 'gbrowse_interval_as_bed' to datatype 'bed12' +galaxy.datatypes.registry DEBUG 2024-02-23 13:02:34,368 [pN:main,p:71805,tN:MainThread] Adding inherited display application 'rviewer_interval' to datatype 'bed12' +galaxy.datatypes.registry DEBUG 2024-02-23 13:02:34,368 [pN:main,p:71805,tN:MainThread] Adding inherited display application 'igv_interval_as_bed' to datatype 'bed12' +galaxy.datatypes.registry DEBUG 2024-02-23 13:02:34,368 [pN:main,p:71805,tN:MainThread] Adding inherited display application 'ensembl_interval' to datatype 'probed' +galaxy.datatypes.registry DEBUG 2024-02-23 13:02:34,368 [pN:main,p:71805,tN:MainThread] Adding inherited display application 'gbrowse_interval_as_bed' to datatype 'probed' +galaxy.datatypes.registry DEBUG 2024-02-23 13:02:34,368 [pN:main,p:71805,tN:MainThread] Adding inherited display application 'rviewer_interval' to datatype 'probed' +galaxy.datatypes.registry DEBUG 2024-02-23 13:02:34,368 [pN:main,p:71805,tN:MainThread] Adding inherited display application 'igv_interval_as_bed' to datatype 'probed' +galaxy.datatypes.registry DEBUG 2024-02-23 13:02:34,369 [pN:main,p:71805,tN:MainThread] Adding inherited display application 'ensembl_interval' to datatype 'chrint' +galaxy.datatypes.registry DEBUG 2024-02-23 13:02:34,369 [pN:main,p:71805,tN:MainThread] Adding inherited display application 'gbrowse_interval_as_bed' to datatype 'chrint' +galaxy.datatypes.registry DEBUG 2024-02-23 13:02:34,369 [pN:main,p:71805,tN:MainThread] Adding inherited display application 'rviewer_interval' to datatype 'chrint' +galaxy.datatypes.registry DEBUG 2024-02-23 13:02:34,369 [pN:main,p:71805,tN:MainThread] Adding inherited display application 'igv_interval_as_bed' to datatype 'chrint' +galaxy.datatypes.registry DEBUG 2024-02-23 13:02:34,369 [pN:main,p:71805,tN:MainThread] Adding inherited display application 'igv_fasta' to datatype 'fasta.gz' +galaxy.datatypes.registry DEBUG 2024-02-23 13:02:34,369 [pN:main,p:71805,tN:MainThread] Adding inherited display application 'ensembl_gff' to datatype 'gff3' +galaxy.datatypes.registry DEBUG 2024-02-23 13:02:34,369 [pN:main,p:71805,tN:MainThread] Adding inherited display application 'igv_gff' to datatype 'gff3' +galaxy.datatypes.registry DEBUG 2024-02-23 13:02:34,369 [pN:main,p:71805,tN:MainThread] Adding inherited display application 'ensembl_gff' to datatype 'gff3.gz' +galaxy.datatypes.registry DEBUG 2024-02-23 13:02:34,369 [pN:main,p:71805,tN:MainThread] Adding inherited display application 'igv_gff' to datatype 'gff3.gz' +galaxy.datatypes.registry DEBUG 2024-02-23 13:02:34,369 [pN:main,p:71805,tN:MainThread] Adding inherited display application 'ensembl_gff' to datatype 'gff3.bz2' +galaxy.datatypes.registry DEBUG 2024-02-23 13:02:34,369 [pN:main,p:71805,tN:MainThread] Adding inherited display application 'igv_gff' to datatype 'gff3.bz2' +galaxy.datatypes.registry DEBUG 2024-02-23 13:02:34,369 [pN:main,p:71805,tN:MainThread] Adding inherited display application 'ensembl_gff' to datatype 'gtf' +galaxy.datatypes.registry DEBUG 2024-02-23 13:02:34,369 [pN:main,p:71805,tN:MainThread] Adding inherited display application 'igv_gff' to datatype 'gtf' +galaxy.datatypes.registry DEBUG 2024-02-23 13:02:34,370 [pN:main,p:71805,tN:MainThread] Adding inherited display application 'ensembl_interval' to datatype 'encodepeak' +galaxy.datatypes.registry DEBUG 2024-02-23 13:02:34,370 [pN:main,p:71805,tN:MainThread] Adding inherited display application 'gbrowse_interval_as_bed' to datatype 'encodepeak' +galaxy.datatypes.registry DEBUG 2024-02-23 13:02:34,370 [pN:main,p:71805,tN:MainThread] Adding inherited display application 'rviewer_interval' to datatype 'encodepeak' +galaxy.datatypes.registry DEBUG 2024-02-23 13:02:34,370 [pN:main,p:71805,tN:MainThread] Adding inherited display application 'igv_interval_as_bed' to datatype 'encodepeak' +galaxy.datatypes.registry DEBUG 2024-02-23 13:02:34,370 [pN:main,p:71805,tN:MainThread] Adding inherited display application 'igv_fasta' to datatype 'sequences' +galaxy.datatypes.registry DEBUG 2024-02-23 13:02:34,370 [pN:main,p:71805,tN:MainThread] Adding inherited display application 'ensembl_interval' to datatype 'interval_tabix.gz' +galaxy.datatypes.registry DEBUG 2024-02-23 13:02:34,370 [pN:main,p:71805,tN:MainThread] Adding inherited display application 'gbrowse_interval_as_bed' to datatype 'interval_tabix.gz' +galaxy.datatypes.registry DEBUG 2024-02-23 13:02:34,370 [pN:main,p:71805,tN:MainThread] Adding inherited display application 'rviewer_interval' to datatype 'interval_tabix.gz' +galaxy.datatypes.registry DEBUG 2024-02-23 13:02:34,370 [pN:main,p:71805,tN:MainThread] Adding inherited display application 'igv_interval_as_bed' to datatype 'interval_tabix.gz' +galaxy.datatypes.registry DEBUG 2024-02-23 13:02:34,370 [pN:main,p:71805,tN:MainThread] Adding inherited display application 'ensembl_interval' to datatype 'juicer_medium_tabix.gz' +galaxy.datatypes.registry DEBUG 2024-02-23 13:02:34,370 [pN:main,p:71805,tN:MainThread] Adding inherited display application 'gbrowse_interval_as_bed' to datatype 'juicer_medium_tabix.gz' +galaxy.datatypes.registry DEBUG 2024-02-23 13:02:34,370 [pN:main,p:71805,tN:MainThread] Adding inherited display application 'rviewer_interval' to datatype 'juicer_medium_tabix.gz' +galaxy.datatypes.registry DEBUG 2024-02-23 13:02:34,370 [pN:main,p:71805,tN:MainThread] Adding inherited display application 'igv_interval_as_bed' to datatype 'juicer_medium_tabix.gz' +galaxy.datatypes.registry DEBUG 2024-02-23 13:02:34,370 [pN:main,p:71805,tN:MainThread] Adding inherited display application 'ensembl_interval' to datatype 'bed_tabix.gz' +galaxy.datatypes.registry DEBUG 2024-02-23 13:02:34,370 [pN:main,p:71805,tN:MainThread] Adding inherited display application 'gbrowse_interval_as_bed' to datatype 'bed_tabix.gz' +galaxy.datatypes.registry DEBUG 2024-02-23 13:02:34,370 [pN:main,p:71805,tN:MainThread] Adding inherited display application 'rviewer_interval' to datatype 'bed_tabix.gz' +galaxy.datatypes.registry DEBUG 2024-02-23 13:02:34,370 [pN:main,p:71805,tN:MainThread] Adding inherited display application 'igv_interval_as_bed' to datatype 'bed_tabix.gz' +galaxy.datatypes.registry DEBUG 2024-02-23 13:02:34,371 [pN:main,p:71805,tN:MainThread] Adding inherited display application 'ensembl_interval' to datatype 'gff_tabix.gz' +galaxy.datatypes.registry DEBUG 2024-02-23 13:02:34,371 [pN:main,p:71805,tN:MainThread] Adding inherited display application 'gbrowse_interval_as_bed' to datatype 'gff_tabix.gz' +galaxy.datatypes.registry DEBUG 2024-02-23 13:02:34,371 [pN:main,p:71805,tN:MainThread] Adding inherited display application 'rviewer_interval' to datatype 'gff_tabix.gz' +galaxy.datatypes.registry DEBUG 2024-02-23 13:02:34,371 [pN:main,p:71805,tN:MainThread] Adding inherited display application 'igv_interval_as_bed' to datatype 'gff_tabix.gz' +galaxy.datatypes.registry DEBUG 2024-02-23 13:02:34,371 [pN:main,p:71805,tN:MainThread] Adding inherited display application 'igv_fasta' to datatype 'mothur.align' +galaxy.datatypes.registry DEBUG 2024-02-23 13:02:34,374 [pN:main,p:71805,tN:MainThread] Loaded converter: CONVERTER_uncompressed_to_gz +galaxy.datatypes.registry DEBUG 2024-02-23 13:02:34,374 [pN:main,p:71805,tN:MainThread] Loaded converter: CONVERTER_gz_to_uncompressed +galaxy.datatypes.registry DEBUG 2024-02-23 13:02:34,376 [pN:main,p:71805,tN:MainThread] Loaded converter: CONVERTER_uncompressed_to_gz +galaxy.datatypes.registry DEBUG 2024-02-23 13:02:34,376 [pN:main,p:71805,tN:MainThread] Loaded converter: CONVERTER_gz_to_uncompressed +galaxy.datatypes.registry DEBUG 2024-02-23 13:02:34,378 [pN:main,p:71805,tN:MainThread] Loaded converter: CONVERTER_uncompressed_to_gz +galaxy.datatypes.registry DEBUG 2024-02-23 13:02:34,378 [pN:main,p:71805,tN:MainThread] Loaded converter: CONVERTER_gz_to_uncompressed +galaxy.datatypes.registry DEBUG 2024-02-23 13:02:34,379 [pN:main,p:71805,tN:MainThread] Loaded converter: CONVERTER_Bam_Bai_0 +galaxy.datatypes.registry DEBUG 2024-02-23 13:02:34,380 [pN:main,p:71805,tN:MainThread] Loaded converter: CONVERTER_bam_to_bigwig_0 +galaxy.datatypes.registry DEBUG 2024-02-23 13:02:34,381 [pN:main,p:71805,tN:MainThread] Loaded converter: CONVERTER_bam_to_qname_sorted_bam +galaxy.datatypes.registry DEBUG 2024-02-23 13:02:34,381 [pN:main,p:71805,tN:MainThread] Loaded converter: CONVERTER_bam_to_bigwig_0 +galaxy.datatypes.registry DEBUG 2024-02-23 13:02:34,382 [pN:main,p:71805,tN:MainThread] Loaded converter: CONVERTER_bam_to_coodinate_sorted_bam +galaxy.datatypes.registry DEBUG 2024-02-23 13:02:34,383 [pN:main,p:71805,tN:MainThread] Loaded converter: CONVERTER_bam_to_qname_sorted_bam +galaxy.datatypes.registry DEBUG 2024-02-23 13:02:34,384 [pN:main,p:71805,tN:MainThread] Loaded converter: CONVERTER_cram_to_bam_0 +galaxy.datatypes.registry DEBUG 2024-02-23 13:02:34,385 [pN:main,p:71805,tN:MainThread] Loaded converter: CONVERTER_bed_to_gff_0 +galaxy.datatypes.registry DEBUG 2024-02-23 13:02:34,386 [pN:main,p:71805,tN:MainThread] Loaded converter: CONVERTER_interval_to_bgzip_0 +galaxy.datatypes.registry DEBUG 2024-02-23 13:02:34,388 [pN:main,p:71805,tN:MainThread] Loaded converter: CONVERTER_interval_to_tabix_0 +galaxy.datatypes.registry DEBUG 2024-02-23 13:02:34,389 [pN:main,p:71805,tN:MainThread] Loaded converter: CONVERTER_bed_gff_or_vcf_to_bigwig_0 +galaxy.datatypes.registry DEBUG 2024-02-23 13:02:34,389 [pN:main,p:71805,tN:MainThread] Loaded converter: CONVERTER_bed_to_fli_0 +galaxy.datatypes.registry DEBUG 2024-02-23 13:02:34,390 [pN:main,p:71805,tN:MainThread] Loaded converter: CONVERTER_bedgraph_to_bigwig +galaxy.datatypes.registry DEBUG 2024-02-23 13:02:34,391 [pN:main,p:71805,tN:MainThread] Loaded converter: CONVERTER_len_to_linecount +galaxy.datatypes.registry DEBUG 2024-02-23 13:02:34,391 [pN:main,p:71805,tN:MainThread] Loaded converter: CONVERTER_parquet_to_csv +galaxy.datatypes.registry DEBUG 2024-02-23 13:02:34,393 [pN:main,p:71805,tN:MainThread] Loaded converter: bigwigtowig +galaxy.datatypes.registry DEBUG 2024-02-23 13:02:34,395 [pN:main,p:71805,tN:MainThread] Loaded converter: CONVERTER_interval_to_bgzip_0 +galaxy.datatypes.registry DEBUG 2024-02-23 13:02:34,396 [pN:main,p:71805,tN:MainThread] Loaded converter: CONVERTER_interval_to_tabix_0 +galaxy.datatypes.registry DEBUG 2024-02-23 13:02:34,397 [pN:main,p:71805,tN:MainThread] Loaded converter: CONVERTER_bed_gff_or_vcf_to_bigwig_0 +galaxy.datatypes.registry DEBUG 2024-02-23 13:02:34,398 [pN:main,p:71805,tN:MainThread] Loaded converter: csv_to_tabular +galaxy.datatypes.registry DEBUG 2024-02-23 13:02:34,399 [pN:main,p:71805,tN:MainThread] Loaded converter: tabular_to_csv +galaxy.datatypes.registry DEBUG 2024-02-23 13:02:34,399 [pN:main,p:71805,tN:MainThread] Loaded converter: CONVERTER_fasta_to_tabular +galaxy.datatypes.registry DEBUG 2024-02-23 13:02:34,400 [pN:main,p:71805,tN:MainThread] Loaded converter: CONVERTER_fasta_to_bowtie_base_index +galaxy.datatypes.registry DEBUG 2024-02-23 13:02:34,401 [pN:main,p:71805,tN:MainThread] Loaded converter: CONVERTER_fasta_to_bowtie_color_index +galaxy.datatypes.registry DEBUG 2024-02-23 13:02:34,401 [pN:main,p:71805,tN:MainThread] Loaded converter: CONVERTER_fasta_to_2bit +galaxy.datatypes.registry DEBUG 2024-02-23 13:02:34,402 [pN:main,p:71805,tN:MainThread] Loaded converter: CONVERTER_fasta_to_len +galaxy.datatypes.registry DEBUG 2024-02-23 13:02:34,403 [pN:main,p:71805,tN:MainThread] Loaded converter: CONVERTER_fasta_to_fai +galaxy.datatypes.registry DEBUG 2024-02-23 13:02:34,404 [pN:main,p:71805,tN:MainThread] Loaded converter: CONVERTER_uncompressed_to_gz +galaxy.datatypes.registry DEBUG 2024-02-23 13:02:34,405 [pN:main,p:71805,tN:MainThread] Loaded converter: CONVERTER_gz_to_uncompressed +galaxy.datatypes.registry DEBUG 2024-02-23 13:02:34,405 [pN:main,p:71805,tN:MainThread] Loaded converter: CONVERTER_fastq_to_fqtoc0 +galaxy.datatypes.registry DEBUG 2024-02-23 13:02:34,406 [pN:main,p:71805,tN:MainThread] Loaded converter: CONVERTER_uncompressed_to_gz +galaxy.datatypes.registry DEBUG 2024-02-23 13:02:34,407 [pN:main,p:71805,tN:MainThread] Loaded converter: CONVERTER_gz_to_uncompressed +galaxy.datatypes.registry DEBUG 2024-02-23 13:02:34,408 [pN:main,p:71805,tN:MainThread] Loaded converter: CONVERTER_bz2_to_uncompressed +galaxy.datatypes.registry DEBUG 2024-02-23 13:02:34,409 [pN:main,p:71805,tN:MainThread] Loaded converter: CONVERTER_fastq_to_fqtoc0 +galaxy.datatypes.registry DEBUG 2024-02-23 13:02:34,410 [pN:main,p:71805,tN:MainThread] Loaded converter: CONVERTER_uncompressed_to_gz +galaxy.datatypes.registry DEBUG 2024-02-23 13:02:34,410 [pN:main,p:71805,tN:MainThread] Loaded converter: CONVERTER_gz_to_uncompressed +galaxy.datatypes.registry DEBUG 2024-02-23 13:02:34,411 [pN:main,p:71805,tN:MainThread] Loaded converter: CONVERTER_bz2_to_uncompressed +galaxy.datatypes.registry DEBUG 2024-02-23 13:02:34,412 [pN:main,p:71805,tN:MainThread] Loaded converter: CONVERTER_fastq_to_fqtoc0 +galaxy.datatypes.registry DEBUG 2024-02-23 13:02:34,413 [pN:main,p:71805,tN:MainThread] Loaded converter: CONVERTER_uncompressed_to_gz +galaxy.datatypes.registry DEBUG 2024-02-23 13:02:34,414 [pN:main,p:71805,tN:MainThread] Loaded converter: CONVERTER_gz_to_uncompressed +galaxy.datatypes.registry DEBUG 2024-02-23 13:02:34,414 [pN:main,p:71805,tN:MainThread] Loaded converter: CONVERTER_bz2_to_uncompressed +galaxy.datatypes.registry DEBUG 2024-02-23 13:02:34,415 [pN:main,p:71805,tN:MainThread] Loaded converter: CONVERTER_fastq_to_fqtoc0 +galaxy.datatypes.registry DEBUG 2024-02-23 13:02:34,416 [pN:main,p:71805,tN:MainThread] Loaded converter: CONVERTER_uncompressed_to_gz +galaxy.datatypes.registry DEBUG 2024-02-23 13:02:34,418 [pN:main,p:71805,tN:MainThread] Loaded converter: CONVERTER_gz_to_uncompressed +galaxy.datatypes.registry DEBUG 2024-02-23 13:02:34,418 [pN:main,p:71805,tN:MainThread] Loaded converter: CONVERTER_bz2_to_uncompressed +galaxy.datatypes.registry DEBUG 2024-02-23 13:02:34,419 [pN:main,p:71805,tN:MainThread] Loaded converter: CONVERTER_fastq_to_fqtoc0 +galaxy.datatypes.registry DEBUG 2024-02-23 13:02:34,420 [pN:main,p:71805,tN:MainThread] Loaded converter: CONVERTER_uncompressed_to_gz +galaxy.datatypes.registry DEBUG 2024-02-23 13:02:34,421 [pN:main,p:71805,tN:MainThread] Loaded converter: CONVERTER_gz_to_uncompressed +galaxy.datatypes.registry DEBUG 2024-02-23 13:02:34,422 [pN:main,p:71805,tN:MainThread] Loaded converter: CONVERTER_bz2_to_uncompressed +galaxy.datatypes.registry DEBUG 2024-02-23 13:02:34,422 [pN:main,p:71805,tN:MainThread] Loaded converter: CONVERTER_gff_to_bed_0 +galaxy.datatypes.registry DEBUG 2024-02-23 13:02:34,423 [pN:main,p:71805,tN:MainThread] Loaded converter: CONVERTER_gff_to_interval_index_0 +galaxy.datatypes.registry DEBUG 2024-02-23 13:02:34,424 [pN:main,p:71805,tN:MainThread] Loaded converter: CONVERTER_bed_gff_or_vcf_to_bigwig_0 +galaxy.datatypes.registry DEBUG 2024-02-23 13:02:34,424 [pN:main,p:71805,tN:MainThread] Loaded converter: CONVERTER_gff_to_fli_0 +galaxy.datatypes.registry DEBUG 2024-02-23 13:02:34,426 [pN:main,p:71805,tN:MainThread] Loaded converter: CONVERTER_interval_to_bgzip_0 +galaxy.datatypes.registry DEBUG 2024-02-23 13:02:34,427 [pN:main,p:71805,tN:MainThread] Loaded converter: CONVERTER_interval_to_tabix_0 +galaxy.datatypes.registry DEBUG 2024-02-23 13:02:34,428 [pN:main,p:71805,tN:MainThread] Loaded converter: CONVERTER_uncompressed_to_gz +galaxy.datatypes.registry DEBUG 2024-02-23 13:02:34,429 [pN:main,p:71805,tN:MainThread] Loaded converter: CONVERTER_gz_to_uncompressed +galaxy.datatypes.registry DEBUG 2024-02-23 13:02:34,430 [pN:main,p:71805,tN:MainThread] Loaded converter: CONVERTER_bz2_to_uncompressed +galaxy.datatypes.registry DEBUG 2024-02-23 13:02:34,430 [pN:main,p:71805,tN:MainThread] Loaded converter: CONVERTER_gff_to_interval_index_0 +galaxy.datatypes.registry DEBUG 2024-02-23 13:02:34,431 [pN:main,p:71805,tN:MainThread] Loaded converter: CONVERTER_bed_gff_or_vcf_to_bigwig_0 +galaxy.datatypes.registry DEBUG 2024-02-23 13:02:34,432 [pN:main,p:71805,tN:MainThread] Loaded converter: CONVERTER_interval_to_bed_0 +galaxy.datatypes.registry DEBUG 2024-02-23 13:02:34,433 [pN:main,p:71805,tN:MainThread] Loaded converter: CONVERTER_interval_to_bedstrict_0 +galaxy.datatypes.registry DEBUG 2024-02-23 13:02:34,433 [pN:main,p:71805,tN:MainThread] Loaded converter: CONVERTER_interval_to_bed6_0 +galaxy.datatypes.registry DEBUG 2024-02-23 13:02:34,434 [pN:main,p:71805,tN:MainThread] Loaded converter: CONVERTER_interval_to_bed12_0 +galaxy.datatypes.registry DEBUG 2024-02-23 13:02:34,436 [pN:main,p:71805,tN:MainThread] Loaded converter: CONVERTER_interval_to_bgzip_0 +galaxy.datatypes.registry DEBUG 2024-02-23 13:02:34,437 [pN:main,p:71805,tN:MainThread] Loaded converter: CONVERTER_interval_to_tabix_0 +galaxy.datatypes.registry DEBUG 2024-02-23 13:02:34,438 [pN:main,p:71805,tN:MainThread] Loaded converter: CONVERTER_interval_to_bigwig_0 +galaxy.datatypes.registry DEBUG 2024-02-23 13:02:34,438 [pN:main,p:71805,tN:MainThread] Loaded converter: CONVERTER_picard_interval_list_to_bed6 +galaxy.datatypes.registry DEBUG 2024-02-23 13:02:34,439 [pN:main,p:71805,tN:MainThread] Loaded converter: CONVERTER_tar_to_directory +galaxy.datatypes.registry DEBUG 2024-02-23 13:02:34,440 [pN:main,p:71805,tN:MainThread] Loaded converter: CONVERTER_uncompressed_to_gz +galaxy.datatypes.registry DEBUG 2024-02-23 13:02:34,441 [pN:main,p:71805,tN:MainThread] Loaded converter: CONVERTER_gz_to_uncompressed +galaxy.datatypes.registry DEBUG 2024-02-23 13:02:34,442 [pN:main,p:71805,tN:MainThread] Loaded converter: CONVERTER_uncompressed_to_gz +galaxy.datatypes.registry DEBUG 2024-02-23 13:02:34,443 [pN:main,p:71805,tN:MainThread] Loaded converter: CONVERTER_gz_to_uncompressed +galaxy.datatypes.registry DEBUG 2024-02-23 13:02:34,444 [pN:main,p:71805,tN:MainThread] Loaded converter: CONVERTER_uncompressed_to_gz +galaxy.datatypes.registry DEBUG 2024-02-23 13:02:34,444 [pN:main,p:71805,tN:MainThread] Loaded converter: CONVERTER_gz_to_uncompressed +galaxy.datatypes.registry DEBUG 2024-02-23 13:02:34,445 [pN:main,p:71805,tN:MainThread] Loaded converter: CONVERTER_maf_to_fasta_0 +galaxy.datatypes.registry DEBUG 2024-02-23 13:02:34,446 [pN:main,p:71805,tN:MainThread] Loaded converter: CONVERTER_maf_to_interval_0 +galaxy.datatypes.registry DEBUG 2024-02-23 13:02:34,447 [pN:main,p:71805,tN:MainThread] Loaded converter: CONVERTER_interval_to_tabix_0 +galaxy.datatypes.registry DEBUG 2024-02-23 13:02:34,448 [pN:main,p:71805,tN:MainThread] Loaded converter: CONVERTER_interval_to_bgzip_0 +galaxy.datatypes.registry DEBUG 2024-02-23 13:02:34,449 [pN:main,p:71805,tN:MainThread] Loaded converter: CONVERTER_bed_gff_or_vcf_to_bigwig_0 +galaxy.datatypes.registry DEBUG 2024-02-23 13:02:34,451 [pN:main,p:71805,tN:MainThread] Loaded converter: CONVERTER_interval_to_bgzip_0 +galaxy.datatypes.registry DEBUG 2024-02-23 13:02:34,452 [pN:main,p:71805,tN:MainThread] Loaded converter: CONVERTER_interval_to_tabix_0 +galaxy.datatypes.registry DEBUG 2024-02-23 13:02:34,453 [pN:main,p:71805,tN:MainThread] Loaded converter: CONVERTER_sam_to_unsorted_bam +galaxy.datatypes.registry DEBUG 2024-02-23 13:02:34,454 [pN:main,p:71805,tN:MainThread] Loaded converter: CONVERTER_bam_to_coodinate_sorted_bam +galaxy.datatypes.registry DEBUG 2024-02-23 13:02:34,454 [pN:main,p:71805,tN:MainThread] Loaded converter: CONVERTER_bam_to_qname_sorted_bam +galaxy.datatypes.registry DEBUG 2024-02-23 13:02:34,455 [pN:main,p:71805,tN:MainThread] Loaded converter: CONVERTER_sam_to_bigwig_0 +galaxy.datatypes.registry DEBUG 2024-02-23 13:02:34,456 [pN:main,p:71805,tN:MainThread] Loaded converter: tabular_to_dbnsfp +galaxy.datatypes.registry DEBUG 2024-02-23 13:02:34,456 [pN:main,p:71805,tN:MainThread] Loaded converter: tabular_to_csv +galaxy.datatypes.registry DEBUG 2024-02-23 13:02:34,458 [pN:main,p:71805,tN:MainThread] Loaded converter: CONVERTER_uncompressed_to_gz +galaxy.datatypes.registry DEBUG 2024-02-23 13:02:34,458 [pN:main,p:71805,tN:MainThread] Loaded converter: CONVERTER_gz_to_uncompressed +galaxy.datatypes.registry DEBUG 2024-02-23 13:02:34,460 [pN:main,p:71805,tN:MainThread] Loaded converter: CONVERTER_interval_to_bgzip_0 +galaxy.datatypes.registry DEBUG 2024-02-23 13:02:34,460 [pN:main,p:71805,tN:MainThread] Loaded converter: CONVERTER_vcf_to_vcf_bgzip_0 +galaxy.datatypes.registry DEBUG 2024-02-23 13:02:34,462 [pN:main,p:71805,tN:MainThread] Loaded converter: CONVERTER_interval_to_tabix_0 +galaxy.datatypes.registry DEBUG 2024-02-23 13:02:34,463 [pN:main,p:71805,tN:MainThread] Loaded converter: CONVERTER_bed_gff_or_vcf_to_bigwig_0 +galaxy.datatypes.registry DEBUG 2024-02-23 13:02:34,464 [pN:main,p:71805,tN:MainThread] Loaded converter: CONVERTER_uncompressed_to_gz +galaxy.datatypes.registry DEBUG 2024-02-23 13:02:34,464 [pN:main,p:71805,tN:MainThread] Loaded converter: CONVERTER_bcf_uncompressed_to_bcf +galaxy.datatypes.registry DEBUG 2024-02-23 13:02:34,465 [pN:main,p:71805,tN:MainThread] Loaded converter: CONVERTER_bcf_uncompressed_to_bcf +galaxy.datatypes.registry DEBUG 2024-02-23 13:02:34,466 [pN:main,p:71805,tN:MainThread] Loaded converter: CONVERTER_wig_to_bigwig +galaxy.datatypes.registry DEBUG 2024-02-23 13:02:34,467 [pN:main,p:71805,tN:MainThread] Loaded converter: CONVERTER_wiggle_to_interval_0 +galaxy.datatypes.registry DEBUG 2024-02-23 13:02:34,467 [pN:main,p:71805,tN:MainThread] Loaded converter: CONVERTER_vcf_bgzip_to_tabix_0 +galaxy.datatypes.registry DEBUG 2024-02-23 13:02:34,468 [pN:main,p:71805,tN:MainThread] Loaded converter: CONVERTER_gz_to_uncompressed +galaxy.datatypes.registry DEBUG 2024-02-23 13:02:34,469 [pN:main,p:71805,tN:MainThread] Loaded converter: lped2fpedconvert +galaxy.datatypes.registry DEBUG 2024-02-23 13:02:34,469 [pN:main,p:71805,tN:MainThread] Loaded converter: lped2pbedconvert +galaxy.datatypes.registry DEBUG 2024-02-23 13:02:34,470 [pN:main,p:71805,tN:MainThread] Loaded converter: pbed2lpedconvert +galaxy.datatypes.registry DEBUG 2024-02-23 13:02:34,470 [pN:main,p:71805,tN:MainThread] Loaded converter: pbed2ldindepconvert +galaxy.datatypes.registry DEBUG 2024-02-23 13:02:34,471 [pN:main,p:71805,tN:MainThread] Loaded converter: CONVERTER_uncompressed_to_gz +galaxy.datatypes.registry DEBUG 2024-02-23 13:02:34,472 [pN:main,p:71805,tN:MainThread] Loaded converter: CONVERTER_gz_to_uncompressed +galaxy.datatypes.registry DEBUG 2024-02-23 13:02:34,473 [pN:main,p:71805,tN:MainThread] Loaded converter: CONVERTER_biom +galaxy.datatypes.registry DEBUG 2024-02-23 13:02:34,474 [pN:main,p:71805,tN:MainThread] Loaded converter: CONVERTER_biom +galaxy.datatypes.registry DEBUG 2024-02-23 13:02:34,478 [pN:main,p:71805,tN:MainThread] Loaded converter: CONVERTER_molecules +galaxy.datatypes.registry DEBUG 2024-02-23 13:02:34,481 [pN:main,p:71805,tN:MainThread] Loaded converter: CONVERTER_molecules +galaxy.datatypes.registry DEBUG 2024-02-23 13:02:34,484 [pN:main,p:71805,tN:MainThread] Loaded converter: CONVERTER_molecules +galaxy.datatypes.registry DEBUG 2024-02-23 13:02:34,485 [pN:main,p:71805,tN:MainThread] Loaded converter: CONVERTER_SMILES_to_MOL +galaxy.datatypes.registry DEBUG 2024-02-23 13:02:34,488 [pN:main,p:71805,tN:MainThread] Loaded converter: CONVERTER_molecules +galaxy.datatypes.registry DEBUG 2024-02-23 13:02:34,489 [pN:main,p:71805,tN:MainThread] Loaded converter: CONVERTER_smiles_to_smiles +galaxy.datatypes.registry DEBUG 2024-02-23 13:02:34,492 [pN:main,p:71805,tN:MainThread] Loaded converter: CONVERTER_molecules +galaxy.datatypes.registry DEBUG 2024-02-23 13:02:34,495 [pN:main,p:71805,tN:MainThread] Loaded converter: CONVERTER_molecules +galaxy.datatypes.registry DEBUG 2024-02-23 13:02:34,498 [pN:main,p:71805,tN:MainThread] Loaded converter: CONVERTER_molecules +galaxy.datatypes.registry DEBUG 2024-02-23 13:02:34,501 [pN:main,p:71805,tN:MainThread] Loaded converter: CONVERTER_molecules +galaxy.datatypes.registry DEBUG 2024-02-23 13:02:34,505 [pN:main,p:71805,tN:MainThread] Loaded converter: CONVERTER_molecules +galaxy.datatypes.registry DEBUG 2024-02-23 13:02:34,508 [pN:main,p:71805,tN:MainThread] Loaded converter: CONVERTER_molecules +galaxy.datatypes.registry DEBUG 2024-02-23 13:02:34,508 [pN:main,p:71805,tN:MainThread] Loaded converter: CONVERTER_inchi_to_mol +galaxy.datatypes.registry DEBUG 2024-02-23 13:02:34,511 [pN:main,p:71805,tN:MainThread] Loaded converter: CONVERTER_molecules +galaxy.datatypes.registry DEBUG 2024-02-23 13:02:34,515 [pN:main,p:71805,tN:MainThread] Loaded converter: CONVERTER_molecules +galaxy.datatypes.registry DEBUG 2024-02-23 13:02:34,518 [pN:main,p:71805,tN:MainThread] Loaded converter: CONVERTER_molecules +galaxy.datatypes.registry DEBUG 2024-02-23 13:02:34,521 [pN:main,p:71805,tN:MainThread] Loaded converter: CONVERTER_molecules +galaxy.datatypes.registry DEBUG 2024-02-23 13:02:34,524 [pN:main,p:71805,tN:MainThread] Loaded converter: CONVERTER_molecules +galaxy.datatypes.registry DEBUG 2024-02-23 13:02:34,527 [pN:main,p:71805,tN:MainThread] Loaded converter: CONVERTER_molecules +galaxy.datatypes.registry DEBUG 2024-02-23 13:02:34,531 [pN:main,p:71805,tN:MainThread] Loaded converter: CONVERTER_molecules +galaxy.datatypes.registry DEBUG 2024-02-23 13:02:34,534 [pN:main,p:71805,tN:MainThread] Loaded converter: CONVERTER_molecules +galaxy.datatypes.registry DEBUG 2024-02-23 13:02:34,537 [pN:main,p:71805,tN:MainThread] Loaded converter: CONVERTER_molecules +galaxy.datatypes.registry DEBUG 2024-02-23 13:02:34,540 [pN:main,p:71805,tN:MainThread] Loaded converter: CONVERTER_molecules +galaxy.datatypes.registry DEBUG 2024-02-23 13:02:34,541 [pN:main,p:71805,tN:MainThread] Loaded converter: CONVERTER_mol2_to_mol +galaxy.datatypes.registry DEBUG 2024-02-23 13:02:34,544 [pN:main,p:71805,tN:MainThread] Loaded converter: CONVERTER_molecules +galaxy.datatypes.registry DEBUG 2024-02-23 13:02:34,545 [pN:main,p:71805,tN:MainThread] Loaded converter: CONVERTER_cml_to_smiles +galaxy.datatypes.registry DEBUG 2024-02-23 13:02:34,548 [pN:main,p:71805,tN:MainThread] Loaded converter: CONVERTER_molecules +galaxy.datatypes.registry DEBUG 2024-02-23 13:02:34,551 [pN:main,p:71805,tN:MainThread] Loaded converter: CONVERTER_molecules +galaxy.datatypes.registry DEBUG 2024-02-23 13:02:34,554 [pN:main,p:71805,tN:MainThread] Loaded converter: CONVERTER_molecules +galaxy.datatypes.registry DEBUG 2024-02-23 13:02:34,555 [pN:main,p:71805,tN:MainThread] Loaded converter: CONVERTER_Pdb_to_Gro_0 +galaxy.datatypes.registry DEBUG 2024-02-23 13:02:34,556 [pN:main,p:71805,tN:MainThread] Loaded converter: CONVERTER_mdconvert +galaxy.datatypes.registry DEBUG 2024-02-23 13:02:34,557 [pN:main,p:71805,tN:MainThread] Loaded converter: CONVERTER_mdconvert +galaxy.datatypes.registry DEBUG 2024-02-23 13:02:34,559 [pN:main,p:71805,tN:MainThread] Loaded converter: CONVERTER_mdconvert +galaxy.datatypes.registry DEBUG 2024-02-23 13:02:34,560 [pN:main,p:71805,tN:MainThread] Loaded converter: CONVERTER_mdconvert +galaxy.datatypes.registry DEBUG 2024-02-23 13:02:34,561 [pN:main,p:71805,tN:MainThread] Loaded converter: CONVERTER_mdconvert +galaxy.datatypes.registry DEBUG 2024-02-23 13:02:34,562 [pN:main,p:71805,tN:MainThread] Loaded converter: CONVERTER_mdconvert +galaxy.datatypes.registry DEBUG 2024-02-23 13:02:34,563 [pN:main,p:71805,tN:MainThread] Loaded converter: CONVERTER_Gro_to_Pdb_0 +galaxy.datatypes.registry DEBUG 2024-02-23 13:02:34,564 [pN:main,p:71805,tN:MainThread] Loaded converter: CONVERTER_ref_to_seq_taxomony +galaxy.datatypes.registry DEBUG 2024-02-23 13:02:34,564 [pN:main,p:71805,tN:MainThread] Loaded converter: CONVERTER_neostorezip_to_neostore +galaxy.datatypes.registry DEBUG 2024-02-23 13:02:34,565 [pN:main,p:71805,tN:MainThread] Loaded external metadata tool: __SET_METADATA__ +galaxy.tools.special_tools DEBUG 2024-02-23 13:02:34,566 [pN:main,p:71805,tN:MainThread] Loaded history export tool: __EXPORT_HISTORY__ +galaxy.tools.special_tools DEBUG 2024-02-23 13:02:34,567 [pN:main,p:71805,tN:MainThread] Loaded history export to uri tool: __EXPORT_HISTORY_TO_URI__ +galaxy.tools.special_tools DEBUG 2024-02-23 13:02:34,567 [pN:main,p:71805,tN:MainThread] Loaded history import tool: __IMPORT_HISTORY__ +galaxy.tools.special_tools DEBUG 2024-02-23 13:02:34,568 [pN:main,p:71805,tN:MainThread] Loaded data fetch tool: __DATA_FETCH__ +galaxy.visualization.plugins.registry INFO 2024-02-23 13:02:34,569 [pN:main,p:71805,tN:MainThread] VisualizationsRegistry, loaded plugin: PCA_3Dplot +galaxy.visualization.plugins.registry INFO 2024-02-23 13:02:34,569 [pN:main,p:71805,tN:MainThread] VisualizationsRegistry, loaded plugin: aequatus +galaxy.visualization.plugins.registry INFO 2024-02-23 13:02:34,569 [pN:main,p:71805,tN:MainThread] VisualizationsRegistry, loaded plugin: annotate_image +galaxy.visualization.plugins.config_parser INFO 2024-02-23 13:02:34,570 [pN:main,p:71805,tN:MainThread] template syntax is deprecated: use entry_point instead +galaxy.visualization.plugins.registry INFO 2024-02-23 13:02:34,570 [pN:main,p:71805,tN:MainThread] VisualizationsRegistry, loaded plugin: chiraviz +galaxy.visualization.plugins.config_parser INFO 2024-02-23 13:02:34,571 [pN:main,p:71805,tN:MainThread] Visualizations plugin disabled: Circster. Skipping... +galaxy.visualization.plugins.config_parser INFO 2024-02-23 13:02:34,571 [pN:main,p:71805,tN:MainThread] template syntax is deprecated: use entry_point instead +galaxy.visualization.plugins.registry INFO 2024-02-23 13:02:34,571 [pN:main,p:71805,tN:MainThread] VisualizationsRegistry, loaded plugin: csg +galaxy.visualization.plugins.registry INFO 2024-02-23 13:02:34,572 [pN:main,p:71805,tN:MainThread] VisualizationsRegistry, loaded plugin: cytoscape +galaxy.visualization.plugins.registry INFO 2024-02-23 13:02:34,572 [pN:main,p:71805,tN:MainThread] VisualizationsRegistry, loaded plugin: drawrna +galaxy.visualization.plugins.registry INFO 2024-02-23 13:02:34,573 [pN:main,p:71805,tN:MainThread] VisualizationsRegistry, loaded plugin: editor +galaxy.visualization.plugins.registry INFO 2024-02-23 13:02:34,574 [pN:main,p:71805,tN:MainThread] VisualizationsRegistry, loaded plugin: example +galaxy.visualization.plugins.config_parser INFO 2024-02-23 13:02:34,574 [pN:main,p:71805,tN:MainThread] template syntax is deprecated: use entry_point instead +galaxy.visualization.plugins.registry INFO 2024-02-23 13:02:34,574 [pN:main,p:71805,tN:MainThread] VisualizationsRegistry, loaded plugin: fits_image_viewer +galaxy.visualization.plugins.config_parser INFO 2024-02-23 13:02:34,575 [pN:main,p:71805,tN:MainThread] template syntax is deprecated: use entry_point instead +galaxy.visualization.plugins.registry INFO 2024-02-23 13:02:34,575 [pN:main,p:71805,tN:MainThread] VisualizationsRegistry, loaded plugin: graphviz +galaxy.visualization.plugins.registry INFO 2024-02-23 13:02:34,576 [pN:main,p:71805,tN:MainThread] VisualizationsRegistry, loaded plugin: h5web +galaxy.visualization.plugins.registry INFO 2024-02-23 13:02:34,577 [pN:main,p:71805,tN:MainThread] VisualizationsRegistry, loaded plugin: heatmap_cluster +galaxy.visualization.plugins.registry INFO 2024-02-23 13:02:34,578 [pN:main,p:71805,tN:MainThread] VisualizationsRegistry, loaded plugin: heatmap_default +galaxy.visualization.plugins.config_parser INFO 2024-02-23 13:02:34,579 [pN:main,p:71805,tN:MainThread] template syntax is deprecated: use entry_point instead +galaxy.visualization.plugins.registry INFO 2024-02-23 13:02:34,579 [pN:main,p:71805,tN:MainThread] VisualizationsRegistry, loaded plugin: hivtrace +galaxy.visualization.plugins.config_parser INFO 2024-02-23 13:02:34,579 [pN:main,p:71805,tN:MainThread] template syntax is deprecated: use entry_point instead +galaxy.visualization.plugins.registry INFO 2024-02-23 13:02:34,579 [pN:main,p:71805,tN:MainThread] VisualizationsRegistry, loaded plugin: hyphyvision +galaxy.visualization.plugins.registry INFO 2024-02-23 13:02:34,581 [pN:main,p:71805,tN:MainThread] VisualizationsRegistry, loaded plugin: jqplot_bar +galaxy.visualization.plugins.registry INFO 2024-02-23 13:02:34,582 [pN:main,p:71805,tN:MainThread] VisualizationsRegistry, loaded plugin: jqplot_box +galaxy.visualization.plugins.registry INFO 2024-02-23 13:02:34,583 [pN:main,p:71805,tN:MainThread] VisualizationsRegistry, loaded plugin: jqplot_histogram +galaxy.visualization.plugins.registry INFO 2024-02-23 13:02:34,584 [pN:main,p:71805,tN:MainThread] VisualizationsRegistry, loaded plugin: jqplot_line +galaxy.visualization.plugins.registry INFO 2024-02-23 13:02:34,585 [pN:main,p:71805,tN:MainThread] VisualizationsRegistry, loaded plugin: jqplot_scatter +galaxy.visualization.plugins.config_parser INFO 2024-02-23 13:02:34,586 [pN:main,p:71805,tN:MainThread] template syntax is deprecated: use entry_point instead +galaxy.visualization.plugins.registry INFO 2024-02-23 13:02:34,586 [pN:main,p:71805,tN:MainThread] VisualizationsRegistry, loaded plugin: audio_player +galaxy.visualization.plugins.config_parser INFO 2024-02-23 13:02:34,586 [pN:main,p:71805,tN:MainThread] template syntax is deprecated: use entry_point instead +galaxy.visualization.plugins.registry INFO 2024-02-23 13:02:34,586 [pN:main,p:71805,tN:MainThread] VisualizationsRegistry, loaded plugin: video_player +galaxy.visualization.plugins.registry INFO 2024-02-23 13:02:34,587 [pN:main,p:71805,tN:MainThread] VisualizationsRegistry, loaded plugin: msa +galaxy.visualization.plugins.config_parser INFO 2024-02-23 13:02:34,587 [pN:main,p:71805,tN:MainThread] template syntax is deprecated: use entry_point instead +galaxy.visualization.plugins.registry INFO 2024-02-23 13:02:34,587 [pN:main,p:71805,tN:MainThread] VisualizationsRegistry, loaded plugin: mvpapp +galaxy.visualization.plugins.registry INFO 2024-02-23 13:02:34,588 [pN:main,p:71805,tN:MainThread] VisualizationsRegistry, loaded plugin: ngl +galaxy.visualization.plugins.registry INFO 2024-02-23 13:02:34,589 [pN:main,p:71805,tN:MainThread] VisualizationsRegistry, loaded plugin: nora +galaxy.visualization.plugins.registry INFO 2024-02-23 13:02:34,590 [pN:main,p:71805,tN:MainThread] VisualizationsRegistry, loaded plugin: nvd3_bar +galaxy.visualization.plugins.registry INFO 2024-02-23 13:02:34,592 [pN:main,p:71805,tN:MainThread] VisualizationsRegistry, loaded plugin: nvd3_bar_stacked +galaxy.visualization.plugins.registry INFO 2024-02-23 13:02:34,593 [pN:main,p:71805,tN:MainThread] VisualizationsRegistry, loaded plugin: nvd3_histogram +galaxy.visualization.plugins.registry INFO 2024-02-23 13:02:34,594 [pN:main,p:71805,tN:MainThread] VisualizationsRegistry, loaded plugin: nvd3_histogram_discrete +galaxy.visualization.plugins.registry INFO 2024-02-23 13:02:34,595 [pN:main,p:71805,tN:MainThread] VisualizationsRegistry, loaded plugin: nvd3_horizontal +galaxy.visualization.plugins.registry INFO 2024-02-23 13:02:34,596 [pN:main,p:71805,tN:MainThread] VisualizationsRegistry, loaded plugin: nvd3_horizontal_stacked +galaxy.visualization.plugins.registry INFO 2024-02-23 13:02:34,598 [pN:main,p:71805,tN:MainThread] VisualizationsRegistry, loaded plugin: nvd3_line +galaxy.visualization.plugins.registry INFO 2024-02-23 13:02:34,599 [pN:main,p:71805,tN:MainThread] VisualizationsRegistry, loaded plugin: nvd3_line_focus +galaxy.visualization.plugins.registry INFO 2024-02-23 13:02:34,600 [pN:main,p:71805,tN:MainThread] VisualizationsRegistry, loaded plugin: nvd3_pie +galaxy.visualization.plugins.registry INFO 2024-02-23 13:02:34,601 [pN:main,p:71805,tN:MainThread] VisualizationsRegistry, loaded plugin: nvd3_scatter +galaxy.visualization.plugins.registry INFO 2024-02-23 13:02:34,602 [pN:main,p:71805,tN:MainThread] VisualizationsRegistry, loaded plugin: nvd3_stackedarea +galaxy.visualization.plugins.registry INFO 2024-02-23 13:02:34,604 [pN:main,p:71805,tN:MainThread] VisualizationsRegistry, loaded plugin: nvd3_stackedarea_full +galaxy.visualization.plugins.registry INFO 2024-02-23 13:02:34,605 [pN:main,p:71805,tN:MainThread] VisualizationsRegistry, loaded plugin: nvd3_stackedarea_stream +galaxy.visualization.plugins.registry INFO 2024-02-23 13:02:34,605 [pN:main,p:71805,tN:MainThread] VisualizationsRegistry, loaded plugin: openlayers +galaxy.visualization.plugins.registry INFO 2024-02-23 13:02:34,606 [pN:main,p:71805,tN:MainThread] VisualizationsRegistry, loaded plugin: openseadragon +galaxy.visualization.plugins.registry INFO 2024-02-23 13:02:34,607 [pN:main,p:71805,tN:MainThread] VisualizationsRegistry, loaded plugin: phylocanvas +galaxy.visualization.plugins.registry INFO 2024-02-23 13:02:34,607 [pN:main,p:71805,tN:MainThread] VisualizationsRegistry, loaded plugin: phyloviz +galaxy.visualization.plugins.registry INFO 2024-02-23 13:02:34,608 [pN:main,p:71805,tN:MainThread] VisualizationsRegistry, loaded plugin: pv +galaxy.visualization.plugins.registry INFO 2024-02-23 13:02:34,608 [pN:main,p:71805,tN:MainThread] VisualizationsRegistry, loaded plugin: scatterplot +galaxy.visualization.plugins.config_parser INFO 2024-02-23 13:02:34,609 [pN:main,p:71805,tN:MainThread] Visualizations plugin disabled: Sweepster. Skipping... +galaxy.visualization.plugins.registry INFO 2024-02-23 13:02:34,609 [pN:main,p:71805,tN:MainThread] VisualizationsRegistry, loaded plugin: trackster +galaxy.visualization.plugins.registry INFO 2024-02-23 13:02:34,609 [pN:main,p:71805,tN:MainThread] VisualizationsRegistry, loaded plugin: ts_visjs +galaxy.visualization.plugins.config_parser INFO 2024-02-23 13:02:34,609 [pN:main,p:71805,tN:MainThread] template syntax is deprecated: use entry_point instead +galaxy.visualization.plugins.registry INFO 2024-02-23 13:02:34,610 [pN:main,p:71805,tN:MainThread] VisualizationsRegistry, loaded plugin: unipept +galaxy.visualization.plugins.registry INFO 2024-02-23 13:02:34,610 [pN:main,p:71805,tN:MainThread] VisualizationsRegistry, loaded plugin: venn +galaxy.tours._impl INFO 2024-02-23 13:02:34,625 [pN:main,p:71805,tN:MainThread] Loaded tour 'core.galaxy_ui' +galaxy.tours._impl INFO 2024-02-23 13:02:34,636 [pN:main,p:71805,tN:MainThread] Loaded tour 'core.deferred' +galaxy.tours._impl INFO 2024-02-23 13:02:34,644 [pN:main,p:71805,tN:MainThread] Loaded tour 'core.history' +galaxy.tours._impl INFO 2024-02-23 13:02:34,651 [pN:main,p:71805,tN:MainThread] Loaded tour 'core.windows' +galaxy.workflow.scheduling_manager INFO 2024-02-23 13:02:34,655 [pN:main,p:71805,tN:MainThread] No workflow schedulers plugin config file defined, using default scheduler. +galaxy.web_stack.handlers INFO 2024-02-23 13:02:34,655 [pN:main,p:71805,tN:MainThread] WorkflowSchedulingManager: No job handler assignment method is set, defaulting to 'HANDLER_ASSIGNMENT_METHODS.DB_SKIP_LOCKED', set the `assign_with` attribute on <handlers> to override the default +galaxy.workflow.scheduling_manager DEBUG 2024-02-23 13:02:34,655 [pN:main,p:71805,tN:MainThread] Starting workflow schedulers +galaxy.app INFO 2024-02-23 13:02:34,656 [pN:main,p:71805,tN:MainThread] Galaxy app startup finished (2214.536 ms) +galaxy.web.framework.base DEBUG 2024-02-23 13:02:34,673 [pN:main,p:71805,tN:MainThread] Enabling 'user' controller, class: User +galaxy.web.framework.base DEBUG 2024-02-23 13:02:34,673 [pN:main,p:71805,tN:MainThread] Enabling 'data_manager' controller, class: DataManager +galaxy.web.framework.base DEBUG 2024-02-23 13:02:34,674 [pN:main,p:71805,tN:MainThread] Enabling 'async' controller, class: ASync +galaxy.web.framework.base DEBUG 2024-02-23 13:02:34,674 [pN:main,p:71805,tN:MainThread] Enabling 'tag' controller, class: TagsController +galaxy.web.framework.base DEBUG 2024-02-23 13:02:34,677 [pN:main,p:71805,tN:MainThread] Enabling 'page' controller, class: PageController +galaxy.web.framework.base DEBUG 2024-02-23 13:02:34,677 [pN:main,p:71805,tN:MainThread] Enabling 'root' controller, class: RootController +galaxy.web.framework.base DEBUG 2024-02-23 13:02:34,678 [pN:main,p:71805,tN:MainThread] Enabling 'tool_runner' controller, class: ToolRunner +galaxy.web.framework.base DEBUG 2024-02-23 13:02:34,678 [pN:main,p:71805,tN:MainThread] Enabling 'error' controller, class: Error +galaxy.web.framework.base DEBUG 2024-02-23 13:02:34,678 [pN:main,p:71805,tN:MainThread] Enabling 'forms' controller, class: Forms +galaxy.web.framework.base DEBUG 2024-02-23 13:02:34,687 [pN:main,p:71805,tN:MainThread] Enabling 'admin_toolshed' controller, class: AdminGalaxy +galaxy.web.framework.base DEBUG 2024-02-23 13:02:34,688 [pN:main,p:71805,tN:MainThread] Enabling 'admin_toolshed' controller, class: AdminToolshed +galaxy.web.framework.base DEBUG 2024-02-23 13:02:34,688 [pN:main,p:71805,tN:MainThread] Enabling 'visualization' controller, class: VisualizationController +galaxy.web.framework.base DEBUG 2024-02-23 13:02:34,689 [pN:main,p:71805,tN:MainThread] Enabling 'shed_tool_static' controller, class: ShedToolStatic +galaxy.web.framework.base DEBUG 2024-02-23 13:02:34,689 [pN:main,p:71805,tN:MainThread] Enabling 'authnz' controller, class: JSAppLauncher +galaxy.web.framework.base DEBUG 2024-02-23 13:02:34,689 [pN:main,p:71805,tN:MainThread] Enabling 'authnz' controller, class: OIDC +galaxy.web.framework.base DEBUG 2024-02-23 13:02:34,690 [pN:main,p:71805,tN:MainThread] Enabling 'workflow' controller, class: WorkflowController +galaxy.web.framework.base DEBUG 2024-02-23 13:02:34,691 [pN:main,p:71805,tN:MainThread] Enabling 'history' controller, class: HistoryController +galaxy.web.framework.base DEBUG 2024-02-23 13:02:34,709 [pN:main,p:71805,tN:MainThread] Enabling 'dataset' controller, class: DatasetInterface +galaxy.web.framework.base DEBUG 2024-02-23 13:02:34,709 [pN:main,p:71805,tN:MainThread] Enabling 'admin' controller, class: AdminGalaxy +galaxy.web.framework.base DEBUG 2024-02-23 13:02:35,147 [pN:main,p:71805,tN:MainThread] Enabling 'library_datasets' API controller, class: LibraryDatasetsController +galaxy.web.framework.base DEBUG 2024-02-23 13:02:35,243 [pN:main,p:71805,tN:MainThread] Enabling 'jobs' API controller, class: JobController +galaxy.web.framework.base DEBUG 2024-02-23 13:02:35,319 [pN:main,p:71805,tN:MainThread] Enabling 'job_files' API controller, class: JobFilesAPIController +galaxy.web.framework.base DEBUG 2024-02-23 13:02:35,349 [pN:main,p:71805,tN:MainThread] Enabling 'toolshed' API controller, class: ToolShedController +galaxy.web.framework.base DEBUG 2024-02-23 13:02:35,359 [pN:main,p:71805,tN:MainThread] Enabling 'tools' API controller, class: ToolsController +galaxy.web.framework.base DEBUG 2024-02-23 13:02:35,437 [pN:main,p:71805,tN:MainThread] Enabling 'trs_consumer' API controller, class: TrsConsumeAPIController +galaxy.web.framework.base DEBUG 2024-02-23 13:02:35,437 [pN:main,p:71805,tN:MainThread] Enabling 'history_dataset_extended_metadata' API controller, class: HistoryDatasetExtendMetadataController +galaxy.web.framework.base DEBUG 2024-02-23 13:02:35,437 [pN:main,p:71805,tN:MainThread] Enabling 'library_dataset_extended_metadata' API controller, class: LibraryDatasetExtendMetadataController +galaxy.web.framework.base DEBUG 2024-02-23 13:02:35,438 [pN:main,p:71805,tN:MainThread] Enabling 'container_resolution' API controller, class: ContainerResolutionAPIController +galaxy.web.framework.base DEBUG 2024-02-23 13:02:35,438 [pN:main,p:71805,tN:MainThread] Enabling 'job_ports' API controller, class: JobPortsAPIController +galaxy.web.framework.base DEBUG 2024-02-23 13:02:35,439 [pN:main,p:71805,tN:MainThread] Enabling 'tool_dependencies' API controller, class: ToolDependenciesAPIController +galaxy.web.framework.base DEBUG 2024-02-23 13:02:35,525 [pN:main,p:71805,tN:MainThread] Enabling 'history_content_provenance' API controller, class: HDAProvenanceController +galaxy.web.framework.base DEBUG 2024-02-23 13:02:35,525 [pN:main,p:71805,tN:MainThread] Enabling 'ldda_provenance' API controller, class: LDDAProvenanceController +galaxy.web.framework.base DEBUG 2024-02-23 13:02:35,525 [pN:main,p:71805,tN:MainThread] Enabling 'tool_entry_points' API controller, class: ToolEntryPointsAPIController +galaxy.web.framework.base DEBUG 2024-02-23 13:02:35,612 [pN:main,p:71805,tN:MainThread] Enabling 'authenticate' API controller, class: AuthenticationController +galaxy.web.framework.base DEBUG 2024-02-23 13:02:35,872 [pN:main,p:71805,tN:MainThread] Enabling 'trs_search' API controller, class: TrsSearchAPIController +galaxy.web.framework.base DEBUG 2024-02-23 13:02:35,905 [pN:main,p:71805,tN:MainThread] Enabling 'tool_shed_repositories' API controller, class: ToolShedRepositoriesController +galaxy.web.framework.base DEBUG 2024-02-23 13:02:36,022 [pN:main,p:71805,tN:MainThread] Enabling 'forms' API controller, class: FormDefinitionAPIController +galaxy.web.framework.base DEBUG 2024-02-23 13:02:36,195 [pN:main,p:71805,tN:MainThread] Enabling 'workflows' API controller, class: WorkflowsAPIController +galaxy.web.framework.base DEBUG 2024-02-23 13:02:36,195 [pN:main,p:71805,tN:MainThread] Enabling 'uploads' API controller, class: UploadsAPIController +galaxy.web.framework.base DEBUG 2024-02-23 13:02:36,689 [pN:main,p:71805,tN:MainThread] Enabling 'history_annotations' API controller, class: HistoryAnnotationsController +galaxy.web.framework.base DEBUG 2024-02-23 13:02:36,690 [pN:main,p:71805,tN:MainThread] Enabling 'history_content_annotations' API controller, class: HistoryContentAnnotationsController +galaxy.web.framework.base DEBUG 2024-02-23 13:02:36,690 [pN:main,p:71805,tN:MainThread] Enabling 'workflow_annotations' API controller, class: WorkflowAnnotationsController +galaxy.web.framework.base DEBUG 2024-02-23 13:02:36,735 [pN:main,p:71805,tN:MainThread] Enabling 'visualizations' API controller, class: VisualizationsController +galaxy.web.framework.base DEBUG 2024-02-23 13:02:36,735 [pN:main,p:71805,tN:MainThread] Enabling 'sanitize_allow' API controller, class: SanitizeAllowController +galaxy.web.framework.base DEBUG 2024-02-23 13:02:36,736 [pN:main,p:71805,tN:MainThread] Enabling 'page_revisions' API controller, class: PageRevisionsController +galaxy.web.framework.base DEBUG 2024-02-23 13:02:36,806 [pN:main,p:71805,tN:MainThread] Enabling 'library_contents' API controller, class: LibraryContentsController +galaxy.web.framework.base DEBUG 2024-02-23 13:02:36,926 [pN:main,p:71805,tN:MainThread] Enabling 'users' API controller, class: UserAPIController +galaxy.web.framework.base DEBUG 2024-02-23 13:02:36,927 [pN:main,p:71805,tN:MainThread] Enabling 'cloudauthz' API controller, class: CloudAuthzController +galaxy.web.framework.base DEBUG 2024-02-23 13:02:36,927 [pN:main,p:71805,tN:MainThread] Enabling 'webhooks' API controller, class: WebhooksController +galaxy.web.framework.base DEBUG 2024-02-23 13:02:37,002 [pN:main,p:71805,tN:MainThread] Enabling 'plugins' API controller, class: PluginsController +galaxy.web.framework.base DEBUG 2024-02-23 13:02:37,038 [pN:main,p:71805,tN:MainThread] Enabling 'dynamic_tools' API controller, class: DynamicToolsController +galaxy.webapps.util DEBUG 2024-02-23 13:02:37,320 [pN:main,p:71805,tN:MainThread] Enabling 'paste.httpexceptions' middleware +galaxy.webapps.util DEBUG 2024-02-23 13:02:37,321 [pN:main,p:71805,tN:MainThread] Enabling 'RemoteUser' middleware +galaxy.webapps.util DEBUG 2024-02-23 13:02:37,321 [pN:main,p:71805,tN:MainThread] Enabling 'ErrorMiddleware' middleware +galaxy.webapps.util DEBUG 2024-02-23 13:02:37,321 [pN:main,p:71805,tN:MainThread] Enabling 'TusMiddleware' middleware +galaxy.webapps.util DEBUG 2024-02-23 13:02:37,321 [pN:main,p:71805,tN:MainThread] Enabling 'XForwardedHostMiddleware' middleware +galaxy.webapps.util DEBUG 2024-02-23 13:02:37,321 [pN:main,p:71805,tN:MainThread] Enabling 'RequestIDMiddleware' middleware +galaxy.webapps.util DEBUG 2024-02-23 13:02:37,321 [pN:main,p:71805,tN:MainThread] Enabling 'build_url_map' middleware +galaxy.webapps.galaxy.buildapp DEBUG 2024-02-23 13:02:37,321 [pN:main,p:71805,tN:MainThread] Prior to webapp return, Galaxy thread <_MainThread(MainThread, started 139634151147328)> is alive. +galaxy.web_stack DEBUG 2024-02-23 13:02:38,927 [pN:main.1,p:72010,tN:Thread-2] server_name set to: main.1 +galaxy.jobs.manager DEBUG 2024-02-23 13:02:38,930 [pN:main.1,p:72010,tN:Thread-2] Initializing job handler +galaxy.jobs INFO 2024-02-23 13:02:38,930 [pN:main.1,p:72010,tN:Thread-2] Handler 'main.1' will load all configured runner plugins +galaxy.jobs.runners.state_handler_factory DEBUG 2024-02-23 13:02:38,948 [pN:main.1,p:72010,tN:Thread-2] Loaded 'failure' state handler from module galaxy.jobs.runners.state_handlers.resubmit +galaxy.jobs DEBUG 2024-02-23 13:02:38,948 [pN:main.1,p:72010,tN:Thread-2] Loaded job runner 'galaxy.jobs.runners.local:LocalJobRunner' as 'local' +galaxy.jobs.handler DEBUG 2024-02-23 13:02:38,949 [pN:main.1,p:72010,tN:Thread-2] Loaded job runners plugins: local +galaxy.jobs.runners DEBUG 2024-02-23 13:02:38,949 [pN:main.1,p:72010,tN:Thread-2] Starting 4 LocalRunner workers +galaxy.jobs.handler DEBUG 2024-02-23 13:02:38,962 [pN:main.1,p:72010,tN:Thread-2] Handler queue starting for jobs assigned to handler: main.1 +galaxy.jobs.handler INFO 2024-02-23 13:02:38,992 [pN:main.1,p:72010,tN:JobHandlerQueue.monitor_thread] Handler job grabber initialized with 'HANDLER_ASSIGNMENT_METHODS.DB_SKIP_LOCKED' assignment method for handler 'main.1', tag(s): +galaxy.jobs.handler INFO 2024-02-23 13:02:38,992 [pN:main.1,p:72010,tN:Thread-2] job handler queue started +galaxy.jobs.handler INFO 2024-02-23 13:02:38,997 [pN:main.1,p:72010,tN:Thread-2] job handler stop queue started +galaxy.jobs.handler INFO 2024-02-23 13:02:38,999 [pN:main.1,p:72010,tN:WorkflowRequestMonitor.monitor_thread] Handler job grabber initialized with 'HANDLER_ASSIGNMENT_METHODS.DB_SKIP_LOCKED' assignment method for handler 'main.1', tag(s): None, _default_ +galaxy.queue_worker INFO 2024-02-23 13:02:39,005 [pN:main.1,p:72010,tN:Thread-2] Binding and starting galaxy control worker for main.1 +galaxy.queue_worker DEBUG 2024-02-23 13:02:39,023 [pN:main.1,p:72010,tN:Thread-2] Executing toolbox reload on 'main.1' +galaxy.util WARNING 2024-02-23 13:02:39,059 [pN:main.1,p:72010,tN:Thread-2] directory not found: /scratch/rico/galaxy/lib/galaxy/util/../../../config/plugins/activities +galaxy.tools WARNING 2024-02-23 13:02:39,061 [pN:main.1,p:72010,tN:Thread-2] The default shed tool config file (/tmp/tmpup6p245_/shed_tool_conf.xml) has been added to the tool_config_file option, if this is not the desired behavior, please set shed_tool_config_file to your primary shed-enabled tool config file +galaxy.tool_util.toolbox.base INFO 2024-02-23 13:02:39,061 [pN:main.1,p:72010,tN:Thread-2] Parsing the tool configuration /tmp/tmpup6p245_/tool_conf.xml +galaxy.tool_util.toolbox.base DEBUG 2024-02-23 13:02:39,061 [pN:main.1,p:72010,tN:Thread-2] Tool path for tool configuration /tmp/tmpup6p245_/tool_conf.xml is None +galaxy.tools WARNING 2024-02-23 13:02:39,062 [pN:main.1,p:72010,tN:Thread-2] The default shed tool config file (/tmp/tmpup6p245_/shed_tool_conf.xml) has been added to the tool_config_file option, if this is not the desired behavior, please set shed_tool_config_file to your primary shed-enabled tool config file +galaxy.tool_util.toolbox.base INFO 2024-02-23 13:02:39,062 [pN:main.1,p:72010,tN:Thread-2] Parsing the tool configuration /tmp/tmpup6p245_/shed_tools_conf.xml +galaxy.tool_util.toolbox.base DEBUG 2024-02-23 13:02:39,062 [pN:main.1,p:72010,tN:Thread-2] Tool path for shed tool configuration /tmp/tmpup6p245_/shed_tools_conf.xml is /tmp/tmpup6p245_/shed_tools +galaxy.tools WARNING 2024-02-23 13:02:39,062 [pN:main.1,p:72010,tN:Thread-2] The default shed tool config file (/tmp/tmpup6p245_/shed_tool_conf.xml) has been added to the tool_config_file option, if this is not the desired behavior, please set shed_tool_config_file to your primary shed-enabled tool config file +galaxy.tool_util.toolbox.base INFO 2024-02-23 13:02:39,063 [pN:main.1,p:72010,tN:Thread-2] Parsing the tool configuration /tmp/tmpup6p245_/empty_tool_conf.xml +galaxy.tool_util.toolbox.base DEBUG 2024-02-23 13:02:39,063 [pN:main.1,p:72010,tN:Thread-2] Tool path for tool configuration /tmp/tmpup6p245_/empty_tool_conf.xml is None +galaxy.tool_util.toolbox.base DEBUG 2024-02-23 13:02:39,063 [pN:main.1,p:72010,tN:Thread-2] Reading tools from config files finished (2.649 ms) +galaxy.tool_util.toolbox.base DEBUG 2024-02-23 13:02:39,063 [pN:main.1,p:72010,tN:Thread-2] Loaded tool id: upload1, version: 1.1.7 into tool panel.. +galaxy.tool_util.toolbox.base DEBUG 2024-02-23 13:02:39,064 [pN:main.1,p:72010,tN:Thread-2] Loading tool panel finished (0.535 ms) +galaxy.tool_util.toolbox.base DEBUG 2024-02-23 13:02:39,069 [pN:main.1,p:72010,tN:Thread-2] Loaded tool id: upload1, version: 1.1.7 into tool panel.. +galaxy.tool_util.toolbox.views.edam DEBUG 2024-02-23 13:02:39,070 [pN:main.1,p:72010,tN:Thread-2] Loading EDAM tool panel finished (5.573 ms) +galaxy.tool_util.toolbox.base DEBUG 2024-02-23 13:02:39,072 [pN:main.1,p:72010,tN:Thread-2] Loaded tool id: upload1, version: 1.1.7 into tool panel.. +galaxy.tool_util.toolbox.views.edam DEBUG 2024-02-23 13:02:39,073 [pN:main.1,p:72010,tN:Thread-2] Loading EDAM tool panel finished (3.141 ms) +galaxy.datatypes.registry DEBUG 2024-02-23 13:02:39,085 [pN:main.1,p:72010,tN:Thread-2] Loaded converter: CONVERTER_uncompressed_to_gz +galaxy.datatypes.registry DEBUG 2024-02-23 13:02:39,085 [pN:main.1,p:72010,tN:Thread-2] Loaded converter: CONVERTER_gz_to_uncompressed +galaxy.datatypes.registry DEBUG 2024-02-23 13:02:39,086 [pN:main.1,p:72010,tN:Thread-2] Loaded converter: CONVERTER_uncompressed_to_gz +galaxy.datatypes.registry DEBUG 2024-02-23 13:02:39,086 [pN:main.1,p:72010,tN:Thread-2] Loaded converter: CONVERTER_gz_to_uncompressed +galaxy.datatypes.registry DEBUG 2024-02-23 13:02:39,086 [pN:main.1,p:72010,tN:Thread-2] Loaded converter: CONVERTER_uncompressed_to_gz +galaxy.datatypes.registry DEBUG 2024-02-23 13:02:39,086 [pN:main.1,p:72010,tN:Thread-2] Loaded converter: CONVERTER_gz_to_uncompressed +galaxy.datatypes.registry DEBUG 2024-02-23 13:02:39,086 [pN:main.1,p:72010,tN:Thread-2] Loaded converter: CONVERTER_Bam_Bai_0 +galaxy.datatypes.registry DEBUG 2024-02-23 13:02:39,087 [pN:main.1,p:72010,tN:Thread-2] Loaded converter: CONVERTER_bam_to_bigwig_0 +galaxy.datatypes.registry DEBUG 2024-02-23 13:02:39,092 [pN:main.1,p:72010,tN:Thread-2] Loaded converter: CONVERTER_bam_to_qname_sorted_bam +galaxy.datatypes.registry DEBUG 2024-02-23 13:02:39,092 [pN:main.1,p:72010,tN:Thread-2] Loaded converter: CONVERTER_bam_to_bigwig_0 +galaxy.datatypes.registry DEBUG 2024-02-23 13:02:39,093 [pN:main.1,p:72010,tN:Thread-2] Loaded converter: CONVERTER_bam_to_coodinate_sorted_bam +galaxy.datatypes.registry DEBUG 2024-02-23 13:02:39,093 [pN:main.1,p:72010,tN:Thread-2] Loaded converter: CONVERTER_bam_to_qname_sorted_bam +galaxy.datatypes.registry DEBUG 2024-02-23 13:02:39,093 [pN:main.1,p:72010,tN:Thread-2] Loaded converter: CONVERTER_cram_to_bam_0 +galaxy.datatypes.registry DEBUG 2024-02-23 13:02:39,093 [pN:main.1,p:72010,tN:Thread-2] Loaded converter: CONVERTER_bed_to_gff_0 +galaxy.datatypes.registry DEBUG 2024-02-23 13:02:39,094 [pN:main.1,p:72010,tN:Thread-2] Loaded converter: CONVERTER_interval_to_bgzip_0 +galaxy.datatypes.registry DEBUG 2024-02-23 13:02:39,094 [pN:main.1,p:72010,tN:Thread-2] Loaded converter: CONVERTER_interval_to_tabix_0 +galaxy.datatypes.registry DEBUG 2024-02-23 13:02:39,100 [pN:main.1,p:72010,tN:Thread-2] Loaded converter: CONVERTER_bed_gff_or_vcf_to_bigwig_0 +galaxy.datatypes.registry DEBUG 2024-02-23 13:02:39,100 [pN:main.1,p:72010,tN:Thread-2] Loaded converter: CONVERTER_bed_to_fli_0 +galaxy.datatypes.registry DEBUG 2024-02-23 13:02:39,100 [pN:main.1,p:72010,tN:Thread-2] Loaded converter: CONVERTER_bedgraph_to_bigwig +galaxy.datatypes.registry DEBUG 2024-02-23 13:02:39,100 [pN:main.1,p:72010,tN:Thread-2] Loaded converter: CONVERTER_len_to_linecount +galaxy.datatypes.registry DEBUG 2024-02-23 13:02:39,100 [pN:main.1,p:72010,tN:Thread-2] Loaded converter: CONVERTER_parquet_to_csv +galaxy.datatypes.registry DEBUG 2024-02-23 13:02:39,101 [pN:main.1,p:72010,tN:Thread-2] Loaded converter: bigwigtowig +galaxy.datatypes.registry DEBUG 2024-02-23 13:02:39,101 [pN:main.1,p:72010,tN:Thread-2] Loaded converter: CONVERTER_interval_to_bgzip_0 +galaxy.datatypes.registry DEBUG 2024-02-23 13:02:39,101 [pN:main.1,p:72010,tN:Thread-2] Loaded converter: CONVERTER_interval_to_tabix_0 +galaxy.datatypes.registry DEBUG 2024-02-23 13:02:39,101 [pN:main.1,p:72010,tN:Thread-2] Loaded converter: CONVERTER_bed_gff_or_vcf_to_bigwig_0 +galaxy.datatypes.registry DEBUG 2024-02-23 13:02:39,101 [pN:main.1,p:72010,tN:Thread-2] Loaded converter: csv_to_tabular +galaxy.datatypes.registry DEBUG 2024-02-23 13:02:39,102 [pN:main.1,p:72010,tN:Thread-2] Loaded converter: tabular_to_csv +galaxy.datatypes.registry DEBUG 2024-02-23 13:02:39,102 [pN:main.1,p:72010,tN:Thread-2] Loaded converter: CONVERTER_fasta_to_tabular +galaxy.datatypes.registry DEBUG 2024-02-23 13:02:39,102 [pN:main.1,p:72010,tN:Thread-2] Loaded converter: CONVERTER_fasta_to_bowtie_base_index +galaxy.datatypes.registry DEBUG 2024-02-23 13:02:39,102 [pN:main.1,p:72010,tN:Thread-2] Loaded converter: CONVERTER_fasta_to_bowtie_color_index +galaxy.datatypes.registry DEBUG 2024-02-23 13:02:39,112 [pN:main.1,p:72010,tN:Thread-2] Loaded converter: CONVERTER_fasta_to_2bit +galaxy.datatypes.registry DEBUG 2024-02-23 13:02:39,112 [pN:main.1,p:72010,tN:Thread-2] Loaded converter: CONVERTER_fasta_to_len +galaxy.datatypes.registry DEBUG 2024-02-23 13:02:39,112 [pN:main.1,p:72010,tN:Thread-2] Loaded converter: CONVERTER_fasta_to_fai +galaxy.datatypes.registry DEBUG 2024-02-23 13:02:39,113 [pN:main.1,p:72010,tN:Thread-2] Loaded converter: CONVERTER_uncompressed_to_gz +galaxy.datatypes.registry DEBUG 2024-02-23 13:02:39,113 [pN:main.1,p:72010,tN:Thread-2] Loaded converter: CONVERTER_gz_to_uncompressed +galaxy.datatypes.registry DEBUG 2024-02-23 13:02:39,114 [pN:main.1,p:72010,tN:Thread-2] Loaded converter: CONVERTER_fastq_to_fqtoc0 +galaxy.datatypes.registry DEBUG 2024-02-23 13:02:39,114 [pN:main.1,p:72010,tN:Thread-2] Loaded converter: CONVERTER_uncompressed_to_gz +galaxy.datatypes.registry DEBUG 2024-02-23 13:02:39,115 [pN:main.1,p:72010,tN:Thread-2] Loaded converter: CONVERTER_gz_to_uncompressed +galaxy.datatypes.registry DEBUG 2024-02-23 13:02:39,115 [pN:main.1,p:72010,tN:Thread-2] Loaded converter: CONVERTER_bz2_to_uncompressed +galaxy.datatypes.registry DEBUG 2024-02-23 13:02:39,116 [pN:main.1,p:72010,tN:Thread-2] Loaded converter: CONVERTER_fastq_to_fqtoc0 +galaxy.datatypes.registry DEBUG 2024-02-23 13:02:39,116 [pN:main.1,p:72010,tN:Thread-2] Loaded converter: CONVERTER_uncompressed_to_gz +galaxy.datatypes.registry DEBUG 2024-02-23 13:02:39,117 [pN:main.1,p:72010,tN:Thread-2] Loaded converter: CONVERTER_gz_to_uncompressed +galaxy.datatypes.registry DEBUG 2024-02-23 13:02:39,117 [pN:main.1,p:72010,tN:Thread-2] Loaded converter: CONVERTER_bz2_to_uncompressed +galaxy.datatypes.registry DEBUG 2024-02-23 13:02:39,118 [pN:main.1,p:72010,tN:Thread-2] Loaded converter: CONVERTER_fastq_to_fqtoc0 +galaxy.datatypes.registry DEBUG 2024-02-23 13:02:39,118 [pN:main.1,p:72010,tN:Thread-2] Loaded converter: CONVERTER_uncompressed_to_gz +galaxy.datatypes.registry DEBUG 2024-02-23 13:02:39,119 [pN:main.1,p:72010,tN:Thread-2] Loaded converter: CONVERTER_gz_to_uncompressed +galaxy.datatypes.registry DEBUG 2024-02-23 13:02:39,119 [pN:main.1,p:72010,tN:Thread-2] Loaded converter: CONVERTER_bz2_to_uncompressed +galaxy.datatypes.registry DEBUG 2024-02-23 13:02:39,120 [pN:main.1,p:72010,tN:Thread-2] Loaded converter: CONVERTER_fastq_to_fqtoc0 +galaxy.datatypes.registry DEBUG 2024-02-23 13:02:39,120 [pN:main.1,p:72010,tN:Thread-2] Loaded converter: CONVERTER_uncompressed_to_gz +galaxy.datatypes.registry DEBUG 2024-02-23 13:02:39,120 [pN:main.1,p:72010,tN:Thread-2] Loaded converter: CONVERTER_gz_to_uncompressed +galaxy.datatypes.registry DEBUG 2024-02-23 13:02:39,120 [pN:main.1,p:72010,tN:Thread-2] Loaded converter: CONVERTER_bz2_to_uncompressed +galaxy.datatypes.registry DEBUG 2024-02-23 13:02:39,121 [pN:main.1,p:72010,tN:Thread-2] Loaded converter: CONVERTER_fastq_to_fqtoc0 +galaxy.datatypes.registry DEBUG 2024-02-23 13:02:39,121 [pN:main.1,p:72010,tN:Thread-2] Loaded converter: CONVERTER_uncompressed_to_gz +galaxy.datatypes.registry DEBUG 2024-02-23 13:02:39,121 [pN:main.1,p:72010,tN:Thread-2] Loaded converter: CONVERTER_gz_to_uncompressed +galaxy.datatypes.registry DEBUG 2024-02-23 13:02:39,121 [pN:main.1,p:72010,tN:Thread-2] Loaded converter: CONVERTER_bz2_to_uncompressed +galaxy.datatypes.registry DEBUG 2024-02-23 13:02:39,122 [pN:main.1,p:72010,tN:Thread-2] Loaded converter: CONVERTER_gff_to_bed_0 +galaxy.datatypes.registry DEBUG 2024-02-23 13:02:39,122 [pN:main.1,p:72010,tN:Thread-2] Loaded converter: CONVERTER_gff_to_interval_index_0 +galaxy.datatypes.registry DEBUG 2024-02-23 13:02:39,122 [pN:main.1,p:72010,tN:Thread-2] Loaded converter: CONVERTER_bed_gff_or_vcf_to_bigwig_0 +galaxy.datatypes.registry DEBUG 2024-02-23 13:02:39,122 [pN:main.1,p:72010,tN:Thread-2] Loaded converter: CONVERTER_gff_to_fli_0 +galaxy.datatypes.registry DEBUG 2024-02-23 13:02:39,123 [pN:main.1,p:72010,tN:Thread-2] Loaded converter: CONVERTER_interval_to_bgzip_0 +galaxy.datatypes.registry DEBUG 2024-02-23 13:02:39,123 [pN:main.1,p:72010,tN:Thread-2] Loaded converter: CONVERTER_interval_to_tabix_0 +galaxy.datatypes.registry DEBUG 2024-02-23 13:02:39,123 [pN:main.1,p:72010,tN:Thread-2] Loaded converter: CONVERTER_uncompressed_to_gz +galaxy.datatypes.registry DEBUG 2024-02-23 13:02:39,123 [pN:main.1,p:72010,tN:Thread-2] Loaded converter: CONVERTER_gz_to_uncompressed +galaxy.datatypes.registry DEBUG 2024-02-23 13:02:39,123 [pN:main.1,p:72010,tN:Thread-2] Loaded converter: CONVERTER_bz2_to_uncompressed +galaxy.datatypes.registry DEBUG 2024-02-23 13:02:39,124 [pN:main.1,p:72010,tN:Thread-2] Loaded converter: CONVERTER_gff_to_interval_index_0 +galaxy.datatypes.registry DEBUG 2024-02-23 13:02:39,124 [pN:main.1,p:72010,tN:Thread-2] Loaded converter: CONVERTER_bed_gff_or_vcf_to_bigwig_0 +galaxy.datatypes.registry DEBUG 2024-02-23 13:02:39,124 [pN:main.1,p:72010,tN:Thread-2] Loaded converter: CONVERTER_interval_to_bed_0 +galaxy.datatypes.registry DEBUG 2024-02-23 13:02:39,124 [pN:main.1,p:72010,tN:Thread-2] Loaded converter: CONVERTER_interval_to_bedstrict_0 +galaxy.datatypes.registry DEBUG 2024-02-23 13:02:39,124 [pN:main.1,p:72010,tN:Thread-2] Loaded converter: CONVERTER_interval_to_bed6_0 +galaxy.datatypes.registry DEBUG 2024-02-23 13:02:39,124 [pN:main.1,p:72010,tN:Thread-2] Loaded converter: CONVERTER_interval_to_bed12_0 +galaxy.datatypes.registry DEBUG 2024-02-23 13:02:39,125 [pN:main.1,p:72010,tN:Thread-2] Loaded converter: CONVERTER_interval_to_bgzip_0 +galaxy.datatypes.registry DEBUG 2024-02-23 13:02:39,125 [pN:main.1,p:72010,tN:Thread-2] Loaded converter: CONVERTER_interval_to_tabix_0 +galaxy.datatypes.registry DEBUG 2024-02-23 13:02:39,125 [pN:main.1,p:72010,tN:Thread-2] Loaded converter: CONVERTER_interval_to_bigwig_0 +galaxy.datatypes.registry DEBUG 2024-02-23 13:02:39,125 [pN:main.1,p:72010,tN:Thread-2] Loaded converter: CONVERTER_picard_interval_list_to_bed6 +galaxy.datatypes.registry DEBUG 2024-02-23 13:02:39,125 [pN:main.1,p:72010,tN:Thread-2] Loaded converter: CONVERTER_tar_to_directory +galaxy.datatypes.registry DEBUG 2024-02-23 13:02:39,126 [pN:main.1,p:72010,tN:Thread-2] Loaded converter: CONVERTER_uncompressed_to_gz +galaxy.datatypes.registry DEBUG 2024-02-23 13:02:39,126 [pN:main.1,p:72010,tN:Thread-2] Loaded converter: CONVERTER_gz_to_uncompressed +galaxy.datatypes.registry DEBUG 2024-02-23 13:02:39,126 [pN:main.1,p:72010,tN:Thread-2] Loaded converter: CONVERTER_uncompressed_to_gz +galaxy.datatypes.registry DEBUG 2024-02-23 13:02:39,126 [pN:main.1,p:72010,tN:Thread-2] Loaded converter: CONVERTER_gz_to_uncompressed +galaxy.datatypes.registry DEBUG 2024-02-23 13:02:39,127 [pN:main.1,p:72010,tN:Thread-2] Loaded converter: CONVERTER_uncompressed_to_gz +galaxy.datatypes.registry DEBUG 2024-02-23 13:02:39,127 [pN:main.1,p:72010,tN:Thread-2] Loaded converter: CONVERTER_gz_to_uncompressed +galaxy.datatypes.registry DEBUG 2024-02-23 13:02:39,127 [pN:main.1,p:72010,tN:Thread-2] Loaded converter: CONVERTER_maf_to_fasta_0 +galaxy.datatypes.registry DEBUG 2024-02-23 13:02:39,127 [pN:main.1,p:72010,tN:Thread-2] Loaded converter: CONVERTER_maf_to_interval_0 +galaxy.datatypes.registry DEBUG 2024-02-23 13:02:39,128 [pN:main.1,p:72010,tN:Thread-2] Loaded converter: CONVERTER_interval_to_tabix_0 +galaxy.datatypes.registry DEBUG 2024-02-23 13:02:39,128 [pN:main.1,p:72010,tN:Thread-2] Loaded converter: CONVERTER_interval_to_bgzip_0 +galaxy.datatypes.registry DEBUG 2024-02-23 13:02:39,128 [pN:main.1,p:72010,tN:Thread-2] Loaded converter: CONVERTER_bed_gff_or_vcf_to_bigwig_0 +galaxy.datatypes.registry DEBUG 2024-02-23 13:02:39,128 [pN:main.1,p:72010,tN:Thread-2] Loaded converter: CONVERTER_interval_to_bgzip_0 +galaxy.datatypes.registry DEBUG 2024-02-23 13:02:39,128 [pN:main.1,p:72010,tN:Thread-2] Loaded converter: CONVERTER_interval_to_tabix_0 +galaxy.datatypes.registry DEBUG 2024-02-23 13:02:39,129 [pN:main.1,p:72010,tN:Thread-2] Loaded converter: CONVERTER_sam_to_unsorted_bam +galaxy.datatypes.registry DEBUG 2024-02-23 13:02:39,129 [pN:main.1,p:72010,tN:Thread-2] Loaded converter: CONVERTER_bam_to_coodinate_sorted_bam +galaxy.datatypes.registry DEBUG 2024-02-23 13:02:39,139 [pN:main.1,p:72010,tN:Thread-2] Loaded converter: CONVERTER_bam_to_qname_sorted_bam +galaxy.datatypes.registry DEBUG 2024-02-23 13:02:39,139 [pN:main.1,p:72010,tN:Thread-2] Loaded converter: CONVERTER_sam_to_bigwig_0 +galaxy.datatypes.registry DEBUG 2024-02-23 13:02:39,140 [pN:main.1,p:72010,tN:Thread-2] Loaded converter: tabular_to_dbnsfp +galaxy.datatypes.registry DEBUG 2024-02-23 13:02:39,140 [pN:main.1,p:72010,tN:Thread-2] Loaded converter: tabular_to_csv +galaxy.datatypes.registry DEBUG 2024-02-23 13:02:39,140 [pN:main.1,p:72010,tN:Thread-2] Loaded converter: CONVERTER_uncompressed_to_gz +galaxy.datatypes.registry DEBUG 2024-02-23 13:02:39,141 [pN:main.1,p:72010,tN:Thread-2] Loaded converter: CONVERTER_gz_to_uncompressed +galaxy.datatypes.registry DEBUG 2024-02-23 13:02:39,141 [pN:main.1,p:72010,tN:Thread-2] Loaded converter: CONVERTER_interval_to_bgzip_0 +galaxy.datatypes.registry DEBUG 2024-02-23 13:02:39,141 [pN:main.1,p:72010,tN:Thread-2] Loaded converter: CONVERTER_vcf_to_vcf_bgzip_0 +galaxy.datatypes.registry DEBUG 2024-02-23 13:02:39,151 [pN:main.1,p:72010,tN:Thread-2] Loaded converter: CONVERTER_interval_to_tabix_0 +galaxy.datatypes.registry DEBUG 2024-02-23 13:02:39,151 [pN:main.1,p:72010,tN:Thread-2] Loaded converter: CONVERTER_bed_gff_or_vcf_to_bigwig_0 +galaxy.datatypes.registry DEBUG 2024-02-23 13:02:39,151 [pN:main.1,p:72010,tN:Thread-2] Loaded converter: CONVERTER_uncompressed_to_gz +galaxy.datatypes.registry DEBUG 2024-02-23 13:02:39,152 [pN:main.1,p:72010,tN:Thread-2] Loaded converter: CONVERTER_bcf_uncompressed_to_bcf +galaxy.datatypes.registry DEBUG 2024-02-23 13:02:39,152 [pN:main.1,p:72010,tN:Thread-2] Loaded converter: CONVERTER_bcf_uncompressed_to_bcf +galaxy.datatypes.registry DEBUG 2024-02-23 13:02:39,156 [pN:main.1,p:72010,tN:Thread-2] Loaded converter: CONVERTER_wig_to_bigwig +galaxy.datatypes.registry DEBUG 2024-02-23 13:02:39,157 [pN:main.1,p:72010,tN:Thread-2] Loaded converter: CONVERTER_wiggle_to_interval_0 +galaxy.datatypes.registry DEBUG 2024-02-23 13:02:39,157 [pN:main.1,p:72010,tN:Thread-2] Loaded converter: CONVERTER_vcf_bgzip_to_tabix_0 +galaxy.datatypes.registry DEBUG 2024-02-23 13:02:39,157 [pN:main.1,p:72010,tN:Thread-2] Loaded converter: CONVERTER_gz_to_uncompressed +galaxy.datatypes.registry DEBUG 2024-02-23 13:02:39,159 [pN:main.1,p:72010,tN:Thread-2] Loaded converter: lped2fpedconvert +galaxy.datatypes.registry DEBUG 2024-02-23 13:02:39,159 [pN:main.1,p:72010,tN:Thread-2] Loaded converter: lped2pbedconvert +galaxy.datatypes.registry DEBUG 2024-02-23 13:02:39,159 [pN:main.1,p:72010,tN:Thread-2] Loaded converter: pbed2lpedconvert +galaxy.datatypes.registry DEBUG 2024-02-23 13:02:39,159 [pN:main.1,p:72010,tN:Thread-2] Loaded converter: pbed2ldindepconvert +galaxy.datatypes.registry DEBUG 2024-02-23 13:02:39,159 [pN:main.1,p:72010,tN:Thread-2] Loaded converter: CONVERTER_uncompressed_to_gz +galaxy.datatypes.registry DEBUG 2024-02-23 13:02:39,160 [pN:main.1,p:72010,tN:Thread-2] Loaded converter: CONVERTER_gz_to_uncompressed +galaxy.datatypes.registry DEBUG 2024-02-23 13:02:39,160 [pN:main.1,p:72010,tN:Thread-2] Loaded converter: CONVERTER_biom +galaxy.datatypes.registry DEBUG 2024-02-23 13:02:39,160 [pN:main.1,p:72010,tN:Thread-2] Loaded converter: CONVERTER_biom +galaxy.datatypes.registry DEBUG 2024-02-23 13:02:39,160 [pN:main.1,p:72010,tN:Thread-2] Loaded converter: CONVERTER_molecules +galaxy.datatypes.registry DEBUG 2024-02-23 13:02:39,160 [pN:main.1,p:72010,tN:Thread-2] Loaded converter: CONVERTER_molecules +galaxy.datatypes.registry DEBUG 2024-02-23 13:02:39,160 [pN:main.1,p:72010,tN:Thread-2] Loaded converter: CONVERTER_molecules +galaxy.datatypes.registry DEBUG 2024-02-23 13:02:39,161 [pN:main.1,p:72010,tN:Thread-2] Loaded converter: CONVERTER_SMILES_to_MOL +galaxy.datatypes.registry DEBUG 2024-02-23 13:02:39,161 [pN:main.1,p:72010,tN:Thread-2] Loaded converter: CONVERTER_molecules +galaxy.datatypes.registry DEBUG 2024-02-23 13:02:39,161 [pN:main.1,p:72010,tN:Thread-2] Loaded converter: CONVERTER_smiles_to_smiles +galaxy.datatypes.registry DEBUG 2024-02-23 13:02:39,161 [pN:main.1,p:72010,tN:Thread-2] Loaded converter: CONVERTER_molecules +galaxy.datatypes.registry DEBUG 2024-02-23 13:02:39,161 [pN:main.1,p:72010,tN:Thread-2] Loaded converter: CONVERTER_molecules +galaxy.datatypes.registry DEBUG 2024-02-23 13:02:39,161 [pN:main.1,p:72010,tN:Thread-2] Loaded converter: CONVERTER_molecules +galaxy.datatypes.registry DEBUG 2024-02-23 13:02:39,162 [pN:main.1,p:72010,tN:Thread-2] Loaded converter: CONVERTER_molecules +galaxy.datatypes.registry DEBUG 2024-02-23 13:02:39,162 [pN:main.1,p:72010,tN:Thread-2] Loaded converter: CONVERTER_molecules +galaxy.datatypes.registry DEBUG 2024-02-23 13:02:39,162 [pN:main.1,p:72010,tN:Thread-2] Loaded converter: CONVERTER_molecules +galaxy.datatypes.registry DEBUG 2024-02-23 13:02:39,162 [pN:main.1,p:72010,tN:Thread-2] Loaded converter: CONVERTER_inchi_to_mol +galaxy.model.database_heartbeat DEBUG 2024-02-23 13:02:39,162 [pN:main.1,p:72010,tN:database_heartbeart_main.1.thread] main.1 is config watcher +galaxy.datatypes.registry DEBUG 2024-02-23 13:02:39,166 [pN:main.1,p:72010,tN:Thread-2] Loaded converter: CONVERTER_molecules +galaxy.datatypes.registry DEBUG 2024-02-23 13:02:39,168 [pN:main.1,p:72010,tN:Thread-2] Loaded converter: CONVERTER_molecules +galaxy.datatypes.registry DEBUG 2024-02-23 13:02:39,168 [pN:main.1,p:72010,tN:Thread-2] Loaded converter: CONVERTER_molecules +galaxy.datatypes.registry DEBUG 2024-02-23 13:02:39,168 [pN:main.1,p:72010,tN:Thread-2] Loaded converter: CONVERTER_molecules +galaxy.datatypes.registry DEBUG 2024-02-23 13:02:39,168 [pN:main.1,p:72010,tN:Thread-2] Loaded converter: CONVERTER_molecules +galaxy.datatypes.registry DEBUG 2024-02-23 13:02:39,169 [pN:main.1,p:72010,tN:Thread-2] Loaded converter: CONVERTER_molecules +galaxy.datatypes.registry DEBUG 2024-02-23 13:02:39,169 [pN:main.1,p:72010,tN:Thread-2] Loaded converter: CONVERTER_molecules +galaxy.datatypes.registry DEBUG 2024-02-23 13:02:39,170 [pN:main.1,p:72010,tN:Thread-2] Loaded converter: CONVERTER_molecules +galaxy.datatypes.registry DEBUG 2024-02-23 13:02:39,170 [pN:main.1,p:72010,tN:Thread-2] Loaded converter: CONVERTER_molecules +galaxy.datatypes.registry DEBUG 2024-02-23 13:02:39,170 [pN:main.1,p:72010,tN:Thread-2] Loaded converter: CONVERTER_molecules +galaxy.datatypes.registry DEBUG 2024-02-23 13:02:39,170 [pN:main.1,p:72010,tN:Thread-2] Loaded converter: CONVERTER_mol2_to_mol +galaxy.datatypes.registry DEBUG 2024-02-23 13:02:39,170 [pN:main.1,p:72010,tN:Thread-2] Loaded converter: CONVERTER_molecules +galaxy.datatypes.registry DEBUG 2024-02-23 13:02:39,170 [pN:main.1,p:72010,tN:Thread-2] Loaded converter: CONVERTER_cml_to_smiles +galaxy.datatypes.registry DEBUG 2024-02-23 13:02:39,170 [pN:main.1,p:72010,tN:Thread-2] Loaded converter: CONVERTER_molecules +galaxy.datatypes.registry DEBUG 2024-02-23 13:02:39,170 [pN:main.1,p:72010,tN:Thread-2] Loaded converter: CONVERTER_molecules +galaxy.datatypes.registry DEBUG 2024-02-23 13:02:39,171 [pN:main.1,p:72010,tN:Thread-2] Loaded converter: CONVERTER_molecules +galaxy.datatypes.registry DEBUG 2024-02-23 13:02:39,171 [pN:main.1,p:72010,tN:Thread-2] Loaded converter: CONVERTER_Pdb_to_Gro_0 +galaxy.datatypes.registry DEBUG 2024-02-23 13:02:39,171 [pN:main.1,p:72010,tN:Thread-2] Loaded converter: CONVERTER_mdconvert +galaxy.datatypes.registry DEBUG 2024-02-23 13:02:39,171 [pN:main.1,p:72010,tN:Thread-2] Loaded converter: CONVERTER_mdconvert +galaxy.datatypes.registry DEBUG 2024-02-23 13:02:39,172 [pN:main.1,p:72010,tN:Thread-2] Loaded converter: CONVERTER_mdconvert +galaxy.datatypes.registry DEBUG 2024-02-23 13:02:39,172 [pN:main.1,p:72010,tN:Thread-2] Loaded converter: CONVERTER_mdconvert +galaxy.datatypes.registry DEBUG 2024-02-23 13:02:39,172 [pN:main.1,p:72010,tN:Thread-2] Loaded converter: CONVERTER_mdconvert +galaxy.datatypes.registry DEBUG 2024-02-23 13:02:39,173 [pN:main.1,p:72010,tN:Thread-2] Loaded converter: CONVERTER_mdconvert +galaxy.datatypes.registry DEBUG 2024-02-23 13:02:39,173 [pN:main.1,p:72010,tN:Thread-2] Loaded converter: CONVERTER_Gro_to_Pdb_0 +galaxy.datatypes.registry DEBUG 2024-02-23 13:02:39,173 [pN:main.1,p:72010,tN:Thread-2] Loaded converter: CONVERTER_ref_to_seq_taxomony +galaxy.datatypes.registry DEBUG 2024-02-23 13:02:39,174 [pN:main.1,p:72010,tN:Thread-2] Loaded converter: CONVERTER_neostorezip_to_neostore +galaxy.datatypes.registry DEBUG 2024-02-23 13:02:39,178 [pN:main.1,p:72010,tN:Thread-2] Loaded external metadata tool: __SET_METADATA__ +galaxy.tools.special_tools DEBUG 2024-02-23 13:02:39,180 [pN:main.1,p:72010,tN:Thread-2] Loaded history export tool: __EXPORT_HISTORY__ +galaxy.tools.special_tools DEBUG 2024-02-23 13:02:39,182 [pN:main.1,p:72010,tN:Thread-2] Loaded history export to uri tool: __EXPORT_HISTORY_TO_URI__ +galaxy.tools.special_tools DEBUG 2024-02-23 13:02:39,183 [pN:main.1,p:72010,tN:Thread-2] Loaded history import tool: __IMPORT_HISTORY__ +galaxy.tools.special_tools DEBUG 2024-02-23 13:02:39,185 [pN:main.1,p:72010,tN:Thread-2] Loaded data fetch tool: __DATA_FETCH__ +galaxy.queue_worker INFO 2024-02-23 13:02:39,185 [pN:main.1,p:72010,tN:Thread-2] Queuing async task rebuild_toolbox_search_index for main.1. +galaxy.queue_worker DEBUG 2024-02-23 13:02:39,274 [pN:main.1,p:72010,tN:Thread-2] Toolbox reload (252.104 ms) +galaxy.queue_worker INFO 2024-02-23 13:02:39,275 [pN:main.1,p:72010,tN:Thread-2] Queuing async task rebuild_toolbox_search_index for main.1. +galaxy.web_stack INFO 2024-02-23 13:02:39,315 [pN:main.1,p:72010,tN:Thread-2] Galaxy server instance 'main.1' is running +[92m +Serving on http://127.0.0.1:44419 +[0m +multipart.multipart DEBUG 2024-02-23 13:02:39,921 [pN:main.1,p:72010,tN:MainThread] Calling on_field_start with no data +multipart.multipart DEBUG 2024-02-23 13:02:39,922 [pN:main.1,p:72010,tN:MainThread] Calling on_field_name with data[0:4] +multipart.multipart DEBUG 2024-02-23 13:02:39,922 [pN:main.1,p:72010,tN:MainThread] Calling on_field_data with data[5:63] +multipart.multipart DEBUG 2024-02-23 13:02:39,922 [pN:main.1,p:72010,tN:MainThread] Calling on_field_end with no data +multipart.multipart DEBUG 2024-02-23 13:02:39,922 [pN:main.1,p:72010,tN:MainThread] Calling on_end with no data +galaxy.tools INFO 2024-02-23 13:02:40,095 [pN:main.1,p:72010,tN:WSGI_0] Validated and populated state for tool request (11.564 ms) +galaxy.tools.actions.upload DEBUG 2024-02-23 13:02:40,101 [pN:main.1,p:72010,tN:WSGI_0] Persisted uploads (0.134 ms) +galaxy.tools.actions.upload DEBUG 2024-02-23 13:02:40,161 [pN:main.1,p:72010,tN:WSGI_0] Checked uploads (59.407 ms) +galaxy.tools.actions.upload DEBUG 2024-02-23 13:02:40,164 [pN:main.1,p:72010,tN:WSGI_0] Created upload job (2.738 ms) +galaxy.tools.execute DEBUG 2024-02-23 13:02:40,164 [pN:main.1,p:72010,tN:WSGI_0] Tool upload1 created job None (62.872 ms) +galaxy.web_stack.handlers INFO 2024-02-23 13:02:40,197 [pN:main.1,p:72010,tN:WSGI_0] (Job[id=1,tool_id=upload1]) Handler '_default_' assigned using 'HANDLER_ASSIGNMENT_METHODS.DB_SKIP_LOCKED' assignment method +galaxy.tools.execute DEBUG 2024-02-23 13:02:40,204 [pN:main.1,p:72010,tN:WSGI_0] Created 1 job(s) for tool upload1 request (108.378 ms) +galaxy.queue_worker INFO 2024-02-23 13:02:40,294 [pN:main.1,p:72010,tN:Thread-1] Instance 'main.1' received 'rebuild_toolbox_search_index' task, executing now. +galaxy.tools.search DEBUG 2024-02-23 13:02:40,298 [pN:main.1,p:72010,tN:Thread-1] Starting to build toolbox index of panel default. +galaxy.tools.search DEBUG 2024-02-23 13:02:40,333 [pN:main.1,p:72010,tN:Thread-1] Toolbox index of panel default finished (34.582 ms) +galaxy.tools.search DEBUG 2024-02-23 13:02:40,333 [pN:main.1,p:72010,tN:Thread-1] Starting to build toolbox index of panel ontology:edam_operations. +galaxy.tools.search DEBUG 2024-02-23 13:02:40,341 [pN:main.1,p:72010,tN:Thread-1] Toolbox index of panel ontology:edam_operations finished (7.979 ms) +galaxy.tools.search DEBUG 2024-02-23 13:02:40,342 [pN:main.1,p:72010,tN:Thread-1] Starting to build toolbox index of panel ontology:edam_topics. +galaxy.tools.search DEBUG 2024-02-23 13:02:40,345 [pN:main.1,p:72010,tN:Thread-1] Toolbox index of panel ontology:edam_topics finished (3.699 ms) +galaxy.queue_worker INFO 2024-02-23 13:02:40,355 [pN:main.1,p:72010,tN:Thread-1] Instance 'main.1' received 'rebuild_toolbox_search_index' task, executing now. +galaxy.tools.search DEBUG 2024-02-23 13:02:40,356 [pN:main.1,p:72010,tN:Thread-1] Starting to build toolbox index of panel default. +galaxy.tools.search DEBUG 2024-02-23 13:02:40,359 [pN:main.1,p:72010,tN:Thread-1] Toolbox index of panel default finished (3.209 ms) +galaxy.tools.search DEBUG 2024-02-23 13:02:40,359 [pN:main.1,p:72010,tN:Thread-1] Starting to build toolbox index of panel ontology:edam_operations. +galaxy.tools.search DEBUG 2024-02-23 13:02:40,362 [pN:main.1,p:72010,tN:Thread-1] Toolbox index of panel ontology:edam_operations finished (3.098 ms) +galaxy.tools.search DEBUG 2024-02-23 13:02:40,363 [pN:main.1,p:72010,tN:Thread-1] Starting to build toolbox index of panel ontology:edam_topics. +galaxy.tools.search DEBUG 2024-02-23 13:02:40,366 [pN:main.1,p:72010,tN:Thread-1] Toolbox index of panel ontology:edam_topics finished (3.087 ms) +galaxy.jobs.mapper DEBUG 2024-02-23 13:02:41,235 [pN:main.1,p:72010,tN:JobHandlerQueue.monitor_thread] (1) Mapped job to destination id: docker_local +galaxy.jobs.handler DEBUG 2024-02-23 13:02:41,239 [pN:main.1,p:72010,tN:JobHandlerQueue.monitor_thread] (1) Dispatching to local runner +galaxy.jobs DEBUG 2024-02-23 13:02:41,249 [pN:main.1,p:72010,tN:JobHandlerQueue.monitor_thread] (1) Persisting job destination (destination id: docker_local) +galaxy.jobs DEBUG 2024-02-23 13:02:41,259 [pN:main.1,p:72010,tN:JobHandlerQueue.monitor_thread] (1) Working directory for job is: /tmp/tmpup6p245_/job_working_directory/000/1 +galaxy.jobs.runners DEBUG 2024-02-23 13:02:41,266 [pN:main.1,p:72010,tN:JobHandlerQueue.monitor_thread] Job [1] queued (27.171 ms) +galaxy.jobs.handler INFO 2024-02-23 13:02:41,282 [pN:main.1,p:72010,tN:JobHandlerQueue.monitor_thread] (1) Job dispatched +galaxy.jobs DEBUG 2024-02-23 13:02:41,379 [pN:main.1,p:72010,tN:LocalRunner.work_thread-0] Job wrapper for Job [1] prepared (84.087 ms) +galaxy.tool_util.deps.containers INFO 2024-02-23 13:02:41,379 [pN:main.1,p:72010,tN:LocalRunner.work_thread-0] Checking with container resolver [ExplicitContainerResolver[]] found description [None] +galaxy.tool_util.deps.containers INFO 2024-02-23 13:02:41,379 [pN:main.1,p:72010,tN:LocalRunner.work_thread-0] Checking with container resolver [CachedMulledDockerContainerResolver[namespace=biocontainers]] found description [None] +galaxy.tool_util.deps.containers INFO 2024-02-23 13:02:41,380 [pN:main.1,p:72010,tN:LocalRunner.work_thread-0] Checking with container resolver [CachedMulledDockerContainerResolver[namespace=local]] found description [None] +galaxy.tool_util.deps.containers INFO 2024-02-23 13:02:41,380 [pN:main.1,p:72010,tN:LocalRunner.work_thread-0] Checking with container resolver [MulledDockerContainerResolver[namespace=biocontainers]] found description [None] +galaxy.tool_util.deps.containers INFO 2024-02-23 13:02:41,380 [pN:main.1,p:72010,tN:LocalRunner.work_thread-0] Checking with container resolver [BuildDockerContainerResolver[namespace=local]] found description [None] +galaxy.jobs.command_factory INFO 2024-02-23 13:02:41,408 [pN:main.1,p:72010,tN:LocalRunner.work_thread-0] Built script [/tmp/tmpup6p245_/job_working_directory/000/1/tool_script.sh] for tool command [python '/scratch/rico/galaxy/tools/data_source/upload.py' '/scratch/rico/galaxy' '/tmp/tmpup6p245_/job_working_directory/000/1/registry.xml' '/tmp/tmpup6p245_/job_working_directory/000/1/upload_params.json' '1:/tmp/tmpup6p245_/job_working_directory/000/1/outputs/dataset_07699200-428e-4ded-926c-67545fea490c_files:/tmp/tmpup6p245_/job_working_directory/000/1/outputs/dataset_07699200-428e-4ded-926c-67545fea490c.dat'] +galaxy.jobs.runners DEBUG 2024-02-23 13:02:41,518 [pN:main.1,p:72010,tN:LocalRunner.work_thread-0] (1) command is: mkdir -p working outputs configs +if [ -d _working ]; then + rm -rf working/ outputs/ configs/; cp -R _working working; cp -R _outputs outputs; cp -R _configs configs +else + cp -R working _working; cp -R outputs _outputs; cp -R configs _configs +fi +cd working; /bin/bash /tmp/tmpup6p245_/job_working_directory/000/1/tool_script.sh > '../outputs/tool_stdout' 2> '../outputs/tool_stderr'; return_code=$?; echo $return_code > /tmp/tmpup6p245_/job_working_directory/000/1/galaxy_1.ec; cd '/tmp/tmpup6p245_/job_working_directory/000/1'; +[ "$GALAXY_VIRTUAL_ENV" = "None" ] && GALAXY_VIRTUAL_ENV="$_GALAXY_VIRTUAL_ENV"; _galaxy_setup_environment True; python metadata/set.py; sh -c "exit $return_code" +galaxy.jobs.runners.local DEBUG 2024-02-23 13:02:41,542 [pN:main.1,p:72010,tN:LocalRunner.work_thread-0] (1) executing job script: /tmp/tmpup6p245_/job_working_directory/000/1/galaxy_1.sh +galaxy.jobs.runners.util.process_groups DEBUG 2024-02-23 13:02:47,710 [pN:main.1,p:72010,tN:LocalRunner.work_thread-0] check_pg(): No process found in process group 72032 +galaxy.jobs.runners.local DEBUG 2024-02-23 13:02:47,711 [pN:main.1,p:72010,tN:LocalRunner.work_thread-0] execution finished: /tmp/tmpup6p245_/job_working_directory/000/1/galaxy_1.sh +galaxy.jobs DEBUG 2024-02-23 13:02:47,736 [pN:main.1,p:72010,tN:LocalRunner.work_thread-0] finish(): Moved /tmp/tmpup6p245_/job_working_directory/000/1/outputs/dataset_07699200-428e-4ded-926c-67545fea490c.dat to /tmp/tmpup6p245_/files/0/7/6/dataset_07699200-428e-4ded-926c-67545fea490c.dat +galaxy.model.metadata DEBUG 2024-02-23 13:02:47,746 [pN:main.1,p:72010,tN:LocalRunner.work_thread-0] loading metadata from file for: HistoryDatasetAssociation 1 +galaxy.jobs DEBUG 2024-02-23 13:02:47,790 [pN:main.1,p:72010,tN:LocalRunner.work_thread-0] job_wrapper.finish for job 1 executed (60.825 ms) +galaxy.tools INFO 2024-02-23 13:02:47,844 [pN:main.1,p:72010,tN:WSGI_2] Validated and populated state for tool request (11.670 ms) +galaxy.tools.actions INFO 2024-02-23 13:02:47,850 [pN:main.1,p:72010,tN:WSGI_2] Handled output named adaptor_report for tool ncbi_fcs_adaptor (3.313 ms) +galaxy.tools.actions INFO 2024-02-23 13:02:47,853 [pN:main.1,p:72010,tN:WSGI_2] Handled output named clean_fasta for tool ncbi_fcs_adaptor (2.419 ms) +galaxy.tools.actions INFO 2024-02-23 13:02:47,860 [pN:main.1,p:72010,tN:WSGI_2] Added output datasets to history (7.127 ms) +galaxy.tools.actions INFO 2024-02-23 13:02:47,862 [pN:main.1,p:72010,tN:WSGI_2] Setup for job Job[unflushed,tool_id=ncbi_fcs_adaptor] complete, ready to be enqueued (1.415 ms) +galaxy.tools.execute DEBUG 2024-02-23 13:02:47,862 [pN:main.1,p:72010,tN:WSGI_2] Tool ncbi_fcs_adaptor created job None (16.232 ms) +galaxy.web_stack.handlers INFO 2024-02-23 13:02:47,883 [pN:main.1,p:72010,tN:WSGI_2] (Job[id=2,tool_id=ncbi_fcs_adaptor]) Handler '_default_' assigned using 'HANDLER_ASSIGNMENT_METHODS.DB_SKIP_LOCKED' assignment method +galaxy.tools.execute DEBUG 2024-02-23 13:02:47,887 [pN:main.1,p:72010,tN:WSGI_2] Created 1 job(s) for tool ncbi_fcs_adaptor request (43.024 ms) +galaxy.jobs.mapper DEBUG 2024-02-23 13:02:48,469 [pN:main.1,p:72010,tN:JobHandlerQueue.monitor_thread] (2) Mapped job to destination id: docker_local +galaxy.jobs.handler DEBUG 2024-02-23 13:02:48,472 [pN:main.1,p:72010,tN:JobHandlerQueue.monitor_thread] (2) Dispatching to local runner +galaxy.jobs DEBUG 2024-02-23 13:02:48,484 [pN:main.1,p:72010,tN:JobHandlerQueue.monitor_thread] (2) Persisting job destination (destination id: docker_local) +galaxy.jobs DEBUG 2024-02-23 13:02:48,493 [pN:main.1,p:72010,tN:JobHandlerQueue.monitor_thread] (2) Working directory for job is: /tmp/tmpup6p245_/job_working_directory/000/2 +galaxy.jobs.runners DEBUG 2024-02-23 13:02:48,505 [pN:main.1,p:72010,tN:JobHandlerQueue.monitor_thread] Job [2] queued (32.742 ms) +galaxy.jobs.handler INFO 2024-02-23 13:02:48,514 [pN:main.1,p:72010,tN:JobHandlerQueue.monitor_thread] (2) Job dispatched +galaxy.security.object_wrapper WARNING 2024-02-23 13:02:48,562 [pN:main.1,p:72010,tN:LocalRunner.work_thread-0] Unable to create dynamic subclass SafeStringWrapper__galaxy.model.none_like.None__NoneType__NotImplementedType__Number__SafeStringWrapper__ToolParameterValueWrapper__bool__bytearray__ellipsis for <class 'galaxy.model.none_like.NoneDataset'>, None: type() doesn't support MRO entry resolution; use types.new_class() +galaxy.jobs DEBUG 2024-02-23 13:02:48,574 [pN:main.1,p:72010,tN:LocalRunner.work_thread-0] Job wrapper for Job [2] prepared (49.101 ms) +galaxy.tool_util.deps.containers INFO 2024-02-23 13:02:48,575 [pN:main.1,p:72010,tN:LocalRunner.work_thread-0] Checking with container resolver [ExplicitContainerResolver[]] found description [ContainerDescription[identifier=ncbi/fcs-adaptor:0.5.0,type=docker]] +galaxy.jobs.command_factory INFO 2024-02-23 13:02:48,610 [pN:main.1,p:72010,tN:LocalRunner.work_thread-0] Built script [/tmp/tmpup6p245_/job_working_directory/000/2/tool_script.sh] for tool command [/app/fcs/bin/av_screen_x -o "$(pwd)" '--prok' '/tmp/tmpup6p245_/files/0/7/6/dataset_07699200-428e-4ded-926c-67545fea490c.dat'] +galaxy.jobs.runners DEBUG 2024-02-23 13:02:48,646 [pN:main.1,p:72010,tN:LocalRunner.work_thread-0] (2) command is: mkdir -p working outputs configs +if [ -d _working ]; then + rm -rf working/ outputs/ configs/; cp -R _working working; cp -R _outputs outputs; cp -R _configs configs +else + cp -R working _working; cp -R outputs _outputs; cp -R configs _configs +fi +cd working; +_on_exit() { + docker kill 5a86b379e7394f348c6813a509d68a59 &> /dev/null +} +trap _on_exit EXIT +docker inspect ncbi/fcs-adaptor:0.5.0 > /dev/null 2>&1 +[ $? -ne 0 ] && docker pull ncbi/fcs-adaptor:0.5.0 > /dev/null 2>&1 + +docker run -e "GALAXY_SLOTS=$GALAXY_SLOTS" -e "GALAXY_MEMORY_MB=$GALAXY_MEMORY_MB" -e "GALAXY_MEMORY_MB_PER_SLOT=$GALAXY_MEMORY_MB_PER_SLOT" -e "HOME=$HOME" -e "_GALAXY_JOB_HOME_DIR=$_GALAXY_JOB_HOME_DIR" -e "_GALAXY_JOB_TMP_DIR=$_GALAXY_JOB_TMP_DIR" -e "TMPDIR=$TMPDIR" -e "TMP=$TMP" -e "TEMP=$TEMP" --name 5a86b379e7394f348c6813a509d68a59 -v "$_GALAXY_JOB_TMP_DIR:$_GALAXY_JOB_TMP_DIR:rw" -v "$TMPDIR:$TMPDIR:rw" -v "$TMP:$TMP:rw" -v "$TEMP:$TEMP:rw" -v /scratch/rico/galaxy:/scratch/rico/galaxy:ro -v /scratch/rico/galaxytools/tools/ncbi_fcs_adaptor:/scratch/rico/galaxytools/tools/ncbi_fcs_adaptor:ro -v /tmp/tmpup6p245_/job_working_directory/000/2:/tmp/tmpup6p245_/job_working_directory/000/2:ro -v /tmp/tmpup6p245_/job_working_directory/000/2/outputs:/tmp/tmpup6p245_/job_working_directory/000/2/outputs:rw -v "$_GALAXY_JOB_HOME_DIR:$_GALAXY_JOB_HOME_DIR:rw" -v /tmp/tmpup6p245_/job_working_directory/000/2/working:/tmp/tmpup6p245_/job_working_directory/000/2/working:rw -v /tmp/tmpup6p245_/files:/tmp/tmpup6p245_/files:ro -v /scratch/rico/galaxy/tool-data:/scratch/rico/galaxy/tool-data:ro --cpus ${GALAXY_SLOTS:-1} -w /tmp/tmpup6p245_/job_working_directory/000/2/working --rm --user 1028:1028 ncbi/fcs-adaptor:0.5.0 /bin/sh /tmp/tmpup6p245_/job_working_directory/000/2/tool_script.sh > '../outputs/tool_stdout' 2> '../outputs/tool_stderr'; return_code=$?; echo $return_code > /tmp/tmpup6p245_/job_working_directory/000/2/galaxy_2.ec; +if [ -f "/tmp/tmpup6p245_/job_working_directory/000/2/working/fcs_adaptor_report.txt" ] ; then cp "/tmp/tmpup6p245_/job_working_directory/000/2/working/fcs_adaptor_report.txt" "/tmp/tmpup6p245_/job_working_directory/000/2/outputs/dataset_55ebf7e9-ff3b-40a8-861e-ceb1a369b921.dat" ; fi; +if [ -f "/tmp/tmpup6p245_/job_working_directory/000/2/working/cleaned_sequences/"*".dat" ] ; then cp "/tmp/tmpup6p245_/job_working_directory/000/2/working/cleaned_sequences/"*".dat" "/tmp/tmpup6p245_/job_working_directory/000/2/outputs/dataset_5d9dd309-0ac0-4552-b677-da14173abff1.dat" ; fi; cd '/tmp/tmpup6p245_/job_working_directory/000/2'; +[ "$GALAXY_VIRTUAL_ENV" = "None" ] && GALAXY_VIRTUAL_ENV="$_GALAXY_VIRTUAL_ENV"; _galaxy_setup_environment True; python metadata/set.py; sh -c "exit $return_code" +galaxy.jobs.runners.local DEBUG 2024-02-23 13:02:48,667 [pN:main.1,p:72010,tN:LocalRunner.work_thread-0] (2) executing job script: /tmp/tmpup6p245_/job_working_directory/000/2/galaxy_2.sh +galaxy.jobs.runners.util.process_groups DEBUG 2024-02-23 13:03:41,023 [pN:main.1,p:72010,tN:LocalRunner.work_thread-0] check_pg(): No process found in process group 72188 +galaxy.jobs.runners.local DEBUG 2024-02-23 13:03:41,024 [pN:main.1,p:72010,tN:LocalRunner.work_thread-0] execution finished: /tmp/tmpup6p245_/job_working_directory/000/2/galaxy_2.sh +galaxy.jobs DEBUG 2024-02-23 13:03:41,042 [pN:main.1,p:72010,tN:LocalRunner.work_thread-0] finish(): Moved /tmp/tmpup6p245_/job_working_directory/000/2/outputs/dataset_55ebf7e9-ff3b-40a8-861e-ceb1a369b921.dat to /tmp/tmpup6p245_/files/5/5/e/dataset_55ebf7e9-ff3b-40a8-861e-ceb1a369b921.dat +galaxy.jobs DEBUG 2024-02-23 13:03:41,042 [pN:main.1,p:72010,tN:LocalRunner.work_thread-0] finish(): Moved /tmp/tmpup6p245_/job_working_directory/000/2/outputs/dataset_5d9dd309-0ac0-4552-b677-da14173abff1.dat to /tmp/tmpup6p245_/files/5/d/9/dataset_5d9dd309-0ac0-4552-b677-da14173abff1.dat +galaxy.model.metadata DEBUG 2024-02-23 13:03:41,052 [pN:main.1,p:72010,tN:LocalRunner.work_thread-0] loading metadata from file for: HistoryDatasetAssociation 2 +galaxy.model.metadata DEBUG 2024-02-23 13:03:41,058 [pN:main.1,p:72010,tN:LocalRunner.work_thread-0] loading metadata from file for: HistoryDatasetAssociation 3 +galaxy.jobs DEBUG 2024-02-23 13:03:41,089 [pN:main.1,p:72010,tN:LocalRunner.work_thread-0] job_wrapper.finish for job 2 executed (52.869 ms) +multipart.multipart DEBUG 2024-02-23 13:03:41,826 [pN:main.1,p:72010,tN:MainThread] Calling on_field_start with no data +multipart.multipart DEBUG 2024-02-23 13:03:41,826 [pN:main.1,p:72010,tN:MainThread] Calling on_field_name with data[0:4] +multipart.multipart DEBUG 2024-02-23 13:03:41,826 [pN:main.1,p:72010,tN:MainThread] Calling on_field_data with data[5:63] +multipart.multipart DEBUG 2024-02-23 13:03:41,826 [pN:main.1,p:72010,tN:MainThread] Calling on_field_end with no data +multipart.multipart DEBUG 2024-02-23 13:03:41,827 [pN:main.1,p:72010,tN:MainThread] Calling on_end with no data +galaxy.tools INFO 2024-02-23 13:03:41,973 [pN:main.1,p:72010,tN:WSGI_8] Validated and populated state for tool request (7.424 ms) +galaxy.tools.actions.upload DEBUG 2024-02-23 13:03:41,976 [pN:main.1,p:72010,tN:WSGI_8] Persisted uploads (0.117 ms) +galaxy.tools.actions.upload DEBUG 2024-02-23 13:03:42,018 [pN:main.1,p:72010,tN:WSGI_8] Checked uploads (41.453 ms) +galaxy.tools.actions.upload DEBUG 2024-02-23 13:03:42,020 [pN:main.1,p:72010,tN:WSGI_8] Created upload job (2.171 ms) +galaxy.tools.execute DEBUG 2024-02-23 13:03:42,020 [pN:main.1,p:72010,tN:WSGI_8] Tool upload1 created job None (44.281 ms) +galaxy.web_stack.handlers INFO 2024-02-23 13:03:42,034 [pN:main.1,p:72010,tN:WSGI_8] (Job[id=3,tool_id=upload1]) Handler '_default_' assigned using 'HANDLER_ASSIGNMENT_METHODS.DB_SKIP_LOCKED' assignment method +galaxy.tools.execute DEBUG 2024-02-23 13:03:42,038 [pN:main.1,p:72010,tN:WSGI_8] Created 1 job(s) for tool upload1 request (64.271 ms) +galaxy.jobs.mapper DEBUG 2024-02-23 13:03:42,755 [pN:main.1,p:72010,tN:JobHandlerQueue.monitor_thread] (3) Mapped job to destination id: docker_local +galaxy.jobs.handler DEBUG 2024-02-23 13:03:42,758 [pN:main.1,p:72010,tN:JobHandlerQueue.monitor_thread] (3) Dispatching to local runner +galaxy.jobs DEBUG 2024-02-23 13:03:42,764 [pN:main.1,p:72010,tN:JobHandlerQueue.monitor_thread] (3) Persisting job destination (destination id: docker_local) +galaxy.jobs DEBUG 2024-02-23 13:03:42,769 [pN:main.1,p:72010,tN:JobHandlerQueue.monitor_thread] (3) Working directory for job is: /tmp/tmpup6p245_/job_working_directory/000/3 +galaxy.jobs.runners DEBUG 2024-02-23 13:03:42,774 [pN:main.1,p:72010,tN:JobHandlerQueue.monitor_thread] Job [3] queued (15.913 ms) +galaxy.jobs.handler INFO 2024-02-23 13:03:42,786 [pN:main.1,p:72010,tN:JobHandlerQueue.monitor_thread] (3) Job dispatched +galaxy.jobs DEBUG 2024-02-23 13:03:42,830 [pN:main.1,p:72010,tN:LocalRunner.work_thread-1] Job wrapper for Job [3] prepared (37.010 ms) +galaxy.tool_util.deps.containers INFO 2024-02-23 13:03:42,830 [pN:main.1,p:72010,tN:LocalRunner.work_thread-1] Checking with container resolver [ExplicitContainerResolver[]] found description [None] +galaxy.tool_util.deps.containers INFO 2024-02-23 13:03:42,830 [pN:main.1,p:72010,tN:LocalRunner.work_thread-1] Checking with container resolver [CachedMulledDockerContainerResolver[namespace=biocontainers]] found description [None] +galaxy.tool_util.deps.containers INFO 2024-02-23 13:03:42,831 [pN:main.1,p:72010,tN:LocalRunner.work_thread-1] Checking with container resolver [CachedMulledDockerContainerResolver[namespace=local]] found description [None] +galaxy.tool_util.deps.containers INFO 2024-02-23 13:03:42,831 [pN:main.1,p:72010,tN:LocalRunner.work_thread-1] Checking with container resolver [MulledDockerContainerResolver[namespace=biocontainers]] found description [None] +galaxy.tool_util.deps.containers INFO 2024-02-23 13:03:42,831 [pN:main.1,p:72010,tN:LocalRunner.work_thread-1] Checking with container resolver [BuildDockerContainerResolver[namespace=local]] found description [None] +galaxy.jobs.command_factory INFO 2024-02-23 13:03:42,859 [pN:main.1,p:72010,tN:LocalRunner.work_thread-1] Built script [/tmp/tmpup6p245_/job_working_directory/000/3/tool_script.sh] for tool command [python '/scratch/rico/galaxy/tools/data_source/upload.py' '/scratch/rico/galaxy' '/tmp/tmpup6p245_/job_working_directory/000/3/registry.xml' '/tmp/tmpup6p245_/job_working_directory/000/3/upload_params.json' '4:/tmp/tmpup6p245_/job_working_directory/000/3/outputs/dataset_2c05641f-5c61-46a5-8e66-5f9b25f3452a_files:/tmp/tmpup6p245_/job_working_directory/000/3/outputs/dataset_2c05641f-5c61-46a5-8e66-5f9b25f3452a.dat'] +galaxy.jobs.runners DEBUG 2024-02-23 13:03:42,886 [pN:main.1,p:72010,tN:LocalRunner.work_thread-1] (3) command is: mkdir -p working outputs configs +if [ -d _working ]; then + rm -rf working/ outputs/ configs/; cp -R _working working; cp -R _outputs outputs; cp -R _configs configs +else + cp -R working _working; cp -R outputs _outputs; cp -R configs _configs +fi +cd working; /bin/bash /tmp/tmpup6p245_/job_working_directory/000/3/tool_script.sh > '../outputs/tool_stdout' 2> '../outputs/tool_stderr'; return_code=$?; echo $return_code > /tmp/tmpup6p245_/job_working_directory/000/3/galaxy_3.ec; cd '/tmp/tmpup6p245_/job_working_directory/000/3'; +[ "$GALAXY_VIRTUAL_ENV" = "None" ] && GALAXY_VIRTUAL_ENV="$_GALAXY_VIRTUAL_ENV"; _galaxy_setup_environment True; python metadata/set.py; sh -c "exit $return_code" +galaxy.jobs.runners.local DEBUG 2024-02-23 13:03:42,908 [pN:main.1,p:72010,tN:LocalRunner.work_thread-1] (3) executing job script: /tmp/tmpup6p245_/job_working_directory/000/3/galaxy_3.sh +galaxy.jobs.runners.util.process_groups DEBUG 2024-02-23 13:03:49,029 [pN:main.1,p:72010,tN:LocalRunner.work_thread-1] check_pg(): No process found in process group 72508 +galaxy.jobs.runners.local DEBUG 2024-02-23 13:03:49,030 [pN:main.1,p:72010,tN:LocalRunner.work_thread-1] execution finished: /tmp/tmpup6p245_/job_working_directory/000/3/galaxy_3.sh +galaxy.jobs DEBUG 2024-02-23 13:03:49,055 [pN:main.1,p:72010,tN:LocalRunner.work_thread-1] finish(): Moved /tmp/tmpup6p245_/job_working_directory/000/3/outputs/dataset_2c05641f-5c61-46a5-8e66-5f9b25f3452a.dat to /tmp/tmpup6p245_/files/2/c/0/dataset_2c05641f-5c61-46a5-8e66-5f9b25f3452a.dat +galaxy.model.metadata DEBUG 2024-02-23 13:03:49,063 [pN:main.1,p:72010,tN:LocalRunner.work_thread-1] loading metadata from file for: HistoryDatasetAssociation 4 +galaxy.jobs DEBUG 2024-02-23 13:03:49,101 [pN:main.1,p:72010,tN:LocalRunner.work_thread-1] job_wrapper.finish for job 3 executed (52.852 ms) +galaxy.tools INFO 2024-02-23 13:03:49,254 [pN:main.1,p:72010,tN:WSGI_0] Validated and populated state for tool request (4.457 ms) +galaxy.tools.actions INFO 2024-02-23 13:03:49,258 [pN:main.1,p:72010,tN:WSGI_0] Handled output named adaptor_report for tool ncbi_fcs_adaptor (1.020 ms) +galaxy.tools.actions INFO 2024-02-23 13:03:49,259 [pN:main.1,p:72010,tN:WSGI_0] Handled output named clean_fasta for tool ncbi_fcs_adaptor (0.691 ms) +galaxy.tools.actions DEBUG 2024-02-23 13:03:49,259 [pN:main.1,p:72010,tN:WSGI_0] Tool ncbi_fcs_adaptor output adaptor_log: dataset output filter (advanced['optional_log'] is not None and 'adaptor_log' in advanced['optional_log'].split(',')) failed: 'list' object has no attribute 'split' +galaxy.tools.actions INFO 2024-02-23 13:03:49,262 [pN:main.1,p:72010,tN:WSGI_0] Handled output named adaptor_log for tool ncbi_fcs_adaptor (2.792 ms) +galaxy.tools.actions DEBUG 2024-02-23 13:03:49,262 [pN:main.1,p:72010,tN:WSGI_0] Tool ncbi_fcs_adaptor output validate_fasta_log: dataset output filter (advanced['optional_log'] is not None and 'validate_fasta_log' in advanced['optional_log'].split(',')) failed: 'list' object has no attribute 'split' +galaxy.tools.actions INFO 2024-02-23 13:03:49,265 [pN:main.1,p:72010,tN:WSGI_0] Handled output named validate_fasta_log for tool ncbi_fcs_adaptor (2.342 ms) +galaxy.tools.actions INFO 2024-02-23 13:03:49,272 [pN:main.1,p:72010,tN:WSGI_0] Added output datasets to history (7.334 ms) +galaxy.tools.actions INFO 2024-02-23 13:03:49,274 [pN:main.1,p:72010,tN:WSGI_0] Setup for job Job[unflushed,tool_id=ncbi_fcs_adaptor] complete, ready to be enqueued (1.971 ms) +galaxy.tools.execute DEBUG 2024-02-23 13:03:49,274 [pN:main.1,p:72010,tN:WSGI_0] Tool ncbi_fcs_adaptor created job None (18.524 ms) +galaxy.web_stack.handlers INFO 2024-02-23 13:03:49,294 [pN:main.1,p:72010,tN:WSGI_0] (Job[id=4,tool_id=ncbi_fcs_adaptor]) Handler '_default_' assigned using 'HANDLER_ASSIGNMENT_METHODS.DB_SKIP_LOCKED' assignment method +galaxy.tools.execute DEBUG 2024-02-23 13:03:49,298 [pN:main.1,p:72010,tN:WSGI_0] Created 1 job(s) for tool ncbi_fcs_adaptor request (43.810 ms) +galaxy.jobs.mapper DEBUG 2024-02-23 13:03:49,957 [pN:main.1,p:72010,tN:JobHandlerQueue.monitor_thread] (4) Mapped job to destination id: docker_local +galaxy.jobs.handler DEBUG 2024-02-23 13:03:49,959 [pN:main.1,p:72010,tN:JobHandlerQueue.monitor_thread] (4) Dispatching to local runner +galaxy.jobs DEBUG 2024-02-23 13:03:49,965 [pN:main.1,p:72010,tN:JobHandlerQueue.monitor_thread] (4) Persisting job destination (destination id: docker_local) +galaxy.jobs DEBUG 2024-02-23 13:03:49,970 [pN:main.1,p:72010,tN:JobHandlerQueue.monitor_thread] (4) Working directory for job is: /tmp/tmpup6p245_/job_working_directory/000/4 +galaxy.jobs.runners DEBUG 2024-02-23 13:03:49,976 [pN:main.1,p:72010,tN:JobHandlerQueue.monitor_thread] Job [4] queued (16.158 ms) +galaxy.jobs.handler INFO 2024-02-23 13:03:49,984 [pN:main.1,p:72010,tN:JobHandlerQueue.monitor_thread] (4) Job dispatched +galaxy.jobs DEBUG 2024-02-23 13:03:50,035 [pN:main.1,p:72010,tN:LocalRunner.work_thread-2] Job wrapper for Job [4] prepared (39.235 ms) +galaxy.tool_util.deps.containers INFO 2024-02-23 13:03:50,036 [pN:main.1,p:72010,tN:LocalRunner.work_thread-2] Checking with container resolver [ExplicitContainerResolver[]] found description [ContainerDescription[identifier=ncbi/fcs-adaptor:0.5.0,type=docker]] +galaxy.jobs.command_factory INFO 2024-02-23 13:03:50,070 [pN:main.1,p:72010,tN:LocalRunner.work_thread-2] Built script [/tmp/tmpup6p245_/job_working_directory/000/4/tool_script.sh] for tool command [/app/fcs/bin/av_screen_x -o "$(pwd)" '--prok' '/tmp/tmpup6p245_/files/2/c/0/dataset_2c05641f-5c61-46a5-8e66-5f9b25f3452a.dat'] +galaxy.jobs.runners DEBUG 2024-02-23 13:03:50,118 [pN:main.1,p:72010,tN:LocalRunner.work_thread-2] (4) command is: mkdir -p working outputs configs +if [ -d _working ]; then + rm -rf working/ outputs/ configs/; cp -R _working working; cp -R _outputs outputs; cp -R _configs configs +else + cp -R working _working; cp -R outputs _outputs; cp -R configs _configs +fi +cd working; +_on_exit() { + docker kill c7f622aecef84f5faefa133d5b287870 &> /dev/null +} +trap _on_exit EXIT +docker inspect ncbi/fcs-adaptor:0.5.0 > /dev/null 2>&1 +[ $? -ne 0 ] && docker pull ncbi/fcs-adaptor:0.5.0 > /dev/null 2>&1 + +docker run -e "GALAXY_SLOTS=$GALAXY_SLOTS" -e "GALAXY_MEMORY_MB=$GALAXY_MEMORY_MB" -e "GALAXY_MEMORY_MB_PER_SLOT=$GALAXY_MEMORY_MB_PER_SLOT" -e "HOME=$HOME" -e "_GALAXY_JOB_HOME_DIR=$_GALAXY_JOB_HOME_DIR" -e "_GALAXY_JOB_TMP_DIR=$_GALAXY_JOB_TMP_DIR" -e "TMPDIR=$TMPDIR" -e "TMP=$TMP" -e "TEMP=$TEMP" --name c7f622aecef84f5faefa133d5b287870 -v "$_GALAXY_JOB_TMP_DIR:$_GALAXY_JOB_TMP_DIR:rw" -v "$TMPDIR:$TMPDIR:rw" -v "$TMP:$TMP:rw" -v "$TEMP:$TEMP:rw" -v /scratch/rico/galaxy:/scratch/rico/galaxy:ro -v /scratch/rico/galaxytools/tools/ncbi_fcs_adaptor:/scratch/rico/galaxytools/tools/ncbi_fcs_adaptor:ro -v /tmp/tmpup6p245_/job_working_directory/000/4:/tmp/tmpup6p245_/job_working_directory/000/4:ro -v /tmp/tmpup6p245_/job_working_directory/000/4/outputs:/tmp/tmpup6p245_/job_working_directory/000/4/outputs:rw -v "$_GALAXY_JOB_HOME_DIR:$_GALAXY_JOB_HOME_DIR:rw" -v /tmp/tmpup6p245_/job_working_directory/000/4/working:/tmp/tmpup6p245_/job_working_directory/000/4/working:rw -v /tmp/tmpup6p245_/files:/tmp/tmpup6p245_/files:ro -v /scratch/rico/galaxy/tool-data:/scratch/rico/galaxy/tool-data:ro --cpus ${GALAXY_SLOTS:-1} -w /tmp/tmpup6p245_/job_working_directory/000/4/working --rm --user 1028:1028 ncbi/fcs-adaptor:0.5.0 /bin/sh /tmp/tmpup6p245_/job_working_directory/000/4/tool_script.sh > '../outputs/tool_stdout' 2> '../outputs/tool_stderr'; return_code=$?; echo $return_code > /tmp/tmpup6p245_/job_working_directory/000/4/galaxy_4.ec; +if [ -f "/tmp/tmpup6p245_/job_working_directory/000/4/working/fcs_adaptor_report.txt" ] ; then cp "/tmp/tmpup6p245_/job_working_directory/000/4/working/fcs_adaptor_report.txt" "/tmp/tmpup6p245_/job_working_directory/000/4/outputs/dataset_954566da-5144-4a2d-b9d4-c957cb4686d9.dat" ; fi; +if [ -f "/tmp/tmpup6p245_/job_working_directory/000/4/working/cleaned_sequences/"*".dat" ] ; then cp "/tmp/tmpup6p245_/job_working_directory/000/4/working/cleaned_sequences/"*".dat" "/tmp/tmpup6p245_/job_working_directory/000/4/outputs/dataset_020eb0e5-c681-4d2d-80dc-b74084cf4900.dat" ; fi; +if [ -f "/tmp/tmpup6p245_/job_working_directory/000/4/working/fcs_adaptor.log" ] ; then cp "/tmp/tmpup6p245_/job_working_directory/000/4/working/fcs_adaptor.log" "/tmp/tmpup6p245_/job_working_directory/000/4/outputs/dataset_ab688873-96b9-46c9-b64c-7aff13729101.dat" ; fi; +if [ -f "/tmp/tmpup6p245_/job_working_directory/000/4/working/validate_fasta.txt" ] ; then cp "/tmp/tmpup6p245_/job_working_directory/000/4/working/validate_fasta.txt" "/tmp/tmpup6p245_/job_working_directory/000/4/outputs/dataset_5dbe8767-7e2c-44ab-8782-8cccd98a9dea.dat" ; fi; cd '/tmp/tmpup6p245_/job_working_directory/000/4'; +[ "$GALAXY_VIRTUAL_ENV" = "None" ] && GALAXY_VIRTUAL_ENV="$_GALAXY_VIRTUAL_ENV"; _galaxy_setup_environment True; python metadata/set.py; sh -c "exit $return_code" +galaxy.jobs.runners.local DEBUG 2024-02-23 13:03:50,143 [pN:main.1,p:72010,tN:LocalRunner.work_thread-2] (4) executing job script: /tmp/tmpup6p245_/job_working_directory/000/4/galaxy_4.sh +galaxy.jobs.runners.util.process_groups DEBUG 2024-02-23 13:04:39,243 [pN:main.1,p:72010,tN:LocalRunner.work_thread-2] check_pg(): No process found in process group 72664 +galaxy.jobs.runners.local DEBUG 2024-02-23 13:04:39,244 [pN:main.1,p:72010,tN:LocalRunner.work_thread-2] execution finished: /tmp/tmpup6p245_/job_working_directory/000/4/galaxy_4.sh +galaxy.jobs DEBUG 2024-02-23 13:04:39,271 [pN:main.1,p:72010,tN:LocalRunner.work_thread-2] finish(): Moved /tmp/tmpup6p245_/job_working_directory/000/4/outputs/dataset_954566da-5144-4a2d-b9d4-c957cb4686d9.dat to /tmp/tmpup6p245_/files/9/5/4/dataset_954566da-5144-4a2d-b9d4-c957cb4686d9.dat +galaxy.jobs DEBUG 2024-02-23 13:04:39,271 [pN:main.1,p:72010,tN:LocalRunner.work_thread-2] finish(): Moved /tmp/tmpup6p245_/job_working_directory/000/4/outputs/dataset_020eb0e5-c681-4d2d-80dc-b74084cf4900.dat to /tmp/tmpup6p245_/files/0/2/0/dataset_020eb0e5-c681-4d2d-80dc-b74084cf4900.dat +galaxy.jobs DEBUG 2024-02-23 13:04:39,271 [pN:main.1,p:72010,tN:LocalRunner.work_thread-2] finish(): Moved /tmp/tmpup6p245_/job_working_directory/000/4/outputs/dataset_ab688873-96b9-46c9-b64c-7aff13729101.dat to /tmp/tmpup6p245_/files/a/b/6/dataset_ab688873-96b9-46c9-b64c-7aff13729101.dat +galaxy.jobs DEBUG 2024-02-23 13:04:39,271 [pN:main.1,p:72010,tN:LocalRunner.work_thread-2] finish(): Moved /tmp/tmpup6p245_/job_working_directory/000/4/outputs/dataset_5dbe8767-7e2c-44ab-8782-8cccd98a9dea.dat to /tmp/tmpup6p245_/files/5/d/b/dataset_5dbe8767-7e2c-44ab-8782-8cccd98a9dea.dat +galaxy.model.metadata DEBUG 2024-02-23 13:04:39,281 [pN:main.1,p:72010,tN:LocalRunner.work_thread-2] loading metadata from file for: HistoryDatasetAssociation 5 +galaxy.model.metadata DEBUG 2024-02-23 13:04:39,285 [pN:main.1,p:72010,tN:LocalRunner.work_thread-2] loading metadata from file for: HistoryDatasetAssociation 6 +galaxy.model.metadata DEBUG 2024-02-23 13:04:39,287 [pN:main.1,p:72010,tN:LocalRunner.work_thread-2] loading metadata from file for: HistoryDatasetAssociation 7 +galaxy.model.metadata DEBUG 2024-02-23 13:04:39,310 [pN:main.1,p:72010,tN:LocalRunner.work_thread-2] loading metadata from file for: HistoryDatasetAssociation 8 +galaxy.jobs DEBUG 2024-02-23 13:04:39,372 [pN:main.1,p:72010,tN:LocalRunner.work_thread-2] job_wrapper.finish for job 4 executed (106.835 ms) +galaxy.queue_worker INFO 2024-02-23 13:04:41,328 [pN:main.1,p:72010,tN:MainThread] Sending reconfigure_watcher control task. +galaxy.util.monitors DEBUG 2024-02-23 13:04:41,343 [pN:main.1,p:72010,tN:MainThread] Joining monitor thread +galaxy.jobs.handler INFO 2024-02-23 13:04:41,343 [pN:main.1,p:72010,tN:MainThread] sending stop signal to worker thread +galaxy.util.monitors DEBUG 2024-02-23 13:04:41,343 [pN:main.1,p:72010,tN:MainThread] Joining monitor thread +galaxy.jobs.handler INFO 2024-02-23 13:04:41,343 [pN:main.1,p:72010,tN:MainThread] job handler queue stopped +galaxy.jobs.runners INFO 2024-02-23 13:04:41,344 [pN:main.1,p:72010,tN:MainThread] LocalRunner: Sending stop signal to 4 job worker threads +galaxy.jobs.runners INFO 2024-02-23 13:04:41,344 [pN:main.1,p:72010,tN:MainThread] Waiting up to 30 seconds for job worker threads to shutdown... +galaxy.jobs.runners DEBUG 2024-02-23 13:04:41,346 [pN:main.1,p:72010,tN:MainThread] Job worker thread terminated: LocalRunner.work_thread-0 +galaxy.jobs.runners INFO 2024-02-23 13:04:41,346 [pN:main.1,p:72010,tN:MainThread] All job worker threads shutdown cleanly +galaxy.jobs.handler INFO 2024-02-23 13:04:41,346 [pN:main.1,p:72010,tN:MainThread] sending stop signal to worker thread +galaxy.util.monitors DEBUG 2024-02-23 13:04:41,346 [pN:main.1,p:72010,tN:MainThread] Joining monitor thread +galaxy.jobs.handler INFO 2024-02-23 13:04:41,346 [pN:main.1,p:72010,tN:MainThread] job handler stop queue stopped +galaxy.jobs DEBUG 2024-02-23 13:08:01,783 [pN:main,p:73244,tN:MainThread] Loading job configuration from /scratch/rico/galaxytools/tools/ncbi_fcs_adaptor/planemo_job_conf.xml +galaxy.jobs DEBUG 2024-02-23 13:08:01,783 [pN:main,p:73244,tN:MainThread] Read job configuration from file: /scratch/rico/galaxytools/tools/ncbi_fcs_adaptor/planemo_job_conf.xml +galaxy.web_stack.handlers INFO 2024-02-23 13:08:01,793 [pN:main,p:73244,tN:MainThread] JobConfiguration: No job handler assignment method is set, defaulting to 'HANDLER_ASSIGNMENT_METHODS.DB_SKIP_LOCKED', set the `assign_with` attribute on <handlers> to override the default +galaxy.jobs INFO 2024-02-23 13:08:01,793 [pN:main,p:73244,tN:MainThread] Job handler assignment methods set to: db-skip-locked +galaxy.web_stack.handlers DEBUG 2024-02-23 13:08:01,793 [pN:main,p:73244,tN:MainThread] default set to child with id or tag 'docker_local' +galaxy.jobs DEBUG 2024-02-23 13:08:01,794 [pN:main,p:73244,tN:MainThread] Done loading job configuration +galaxy.security.vault WARNING 2024-02-23 13:08:01,972 [pN:main,p:73244,tN:MainThread] No vault configured. We recommend defining the vault_config_file setting in galaxy.yml +galaxy.datatypes.registry DEBUG 2024-02-23 13:08:02,014 [pN:main,p:73244,tN:MainThread] Loading datatypes from /scratch/rico/galaxy/lib/galaxy/config/sample/datatypes_conf.xml.sample +galaxy.datatypes.registry DEBUG 2024-02-23 13:08:02,015 [pN:main,p:73244,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension source.h. +galaxy.datatypes.registry DEBUG 2024-02-23 13:08:02,015 [pN:main,p:73244,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension source.c. +galaxy.datatypes.registry DEBUG 2024-02-23 13:08:02,015 [pN:main,p:73244,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension source.cpp. +galaxy.datatypes.registry DEBUG 2024-02-23 13:08:02,015 [pN:main,p:73244,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension source.py. +galaxy.datatypes.registry DEBUG 2024-02-23 13:08:02,015 [pN:main,p:73244,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension source.go. +galaxy.datatypes.registry DEBUG 2024-02-23 13:08:02,015 [pN:main,p:73244,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension source.rs. +galaxy.datatypes.registry DEBUG 2024-02-23 13:08:02,016 [pN:main,p:73244,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension source.cs. +galaxy.datatypes.registry DEBUG 2024-02-23 13:08:02,016 [pN:main,p:73244,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:Binary from the datatype registry for extension hep.root. +galaxy.datatypes.registry DEBUG 2024-02-23 13:08:02,016 [pN:main,p:73244,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:JP2 from the datatype registry for extension jp2. +galaxy.datatypes.registry DEBUG 2024-02-23 13:08:02,016 [pN:main,p:73244,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:Ab1 from the datatype registry for extension ab1. +galaxy.datatypes.registry DEBUG 2024-02-23 13:08:02,017 [pN:main,p:73244,tN:MainThread] Retrieved datatype module galaxy.datatypes.assembly:Amos from the datatype registry for extension afg. +galaxy.datatypes.registry DEBUG 2024-02-23 13:08:02,017 [pN:main,p:73244,tN:MainThread] Retrieved datatype module galaxy.datatypes.goldenpath:GoldenPath from the datatype registry for extension agp. +galaxy.datatypes.registry DEBUG 2024-02-23 13:08:02,018 [pN:main,p:73244,tN:MainThread] Retrieved datatype module galaxy.datatypes.anvio:AnvioComposite from the datatype registry for extension anvio_cog_profile. +galaxy.datatypes.registry DEBUG 2024-02-23 13:08:02,018 [pN:main,p:73244,tN:MainThread] Retrieved datatype module galaxy.datatypes.anvio:AnvioComposite from the datatype registry for extension anvio_composite. +galaxy.datatypes.registry DEBUG 2024-02-23 13:08:02,018 [pN:main,p:73244,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:Data from the datatype registry for extension anvio_classifier. +galaxy.datatypes.registry DEBUG 2024-02-23 13:08:02,019 [pN:main,p:73244,tN:MainThread] Retrieved datatype module galaxy.datatypes.anvio:AnvioContigsDB from the datatype registry for extension anvio_contigs_db. +galaxy.datatypes.registry DEBUG 2024-02-23 13:08:02,019 [pN:main,p:73244,tN:MainThread] Retrieved datatype module galaxy.datatypes.anvio:AnvioDB from the datatype registry for extension anvio_db. +galaxy.datatypes.registry DEBUG 2024-02-23 13:08:02,019 [pN:main,p:73244,tN:MainThread] Retrieved datatype module galaxy.datatypes.anvio:AnvioGenomesDB from the datatype registry for extension anvio_genomes_db. +galaxy.datatypes.registry DEBUG 2024-02-23 13:08:02,019 [pN:main,p:73244,tN:MainThread] Retrieved datatype module galaxy.datatypes.anvio:AnvioPanDB from the datatype registry for extension anvio_pan_db. +galaxy.datatypes.registry DEBUG 2024-02-23 13:08:02,019 [pN:main,p:73244,tN:MainThread] Retrieved datatype module galaxy.datatypes.anvio:AnvioComposite from the datatype registry for extension anvio_pfam_profile. +galaxy.datatypes.registry DEBUG 2024-02-23 13:08:02,019 [pN:main,p:73244,tN:MainThread] Retrieved datatype module galaxy.datatypes.anvio:AnvioProfileDB from the datatype registry for extension anvio_profile_db. +galaxy.datatypes.registry DEBUG 2024-02-23 13:08:02,019 [pN:main,p:73244,tN:MainThread] Retrieved datatype module galaxy.datatypes.anvio:AnvioSamplesDB from the datatype registry for extension anvio_samples_db. +galaxy.datatypes.registry DEBUG 2024-02-23 13:08:02,019 [pN:main,p:73244,tN:MainThread] Retrieved datatype module galaxy.datatypes.text:Json from the datatype registry for extension anvio_state. +galaxy.datatypes.registry DEBUG 2024-02-23 13:08:02,019 [pN:main,p:73244,tN:MainThread] Retrieved datatype module galaxy.datatypes.anvio:AnvioStructureDB from the datatype registry for extension anvio_structure_db. +galaxy.datatypes.registry DEBUG 2024-02-23 13:08:02,019 [pN:main,p:73244,tN:MainThread] Retrieved datatype module galaxy.datatypes.tabular:TSV from the datatype registry for extension anvio_variability. +galaxy.datatypes.registry DEBUG 2024-02-23 13:08:02,020 [pN:main,p:73244,tN:MainThread] Retrieved datatype module galaxy.datatypes.text:Arff from the datatype registry for extension arff. +galaxy.datatypes.registry DEBUG 2024-02-23 13:08:02,020 [pN:main,p:73244,tN:MainThread] Retrieved datatype module galaxy.datatypes.text:Paf from the datatype registry for extension paf. +galaxy.datatypes.registry DEBUG 2024-02-23 13:08:02,020 [pN:main,p:73244,tN:MainThread] Retrieved datatype module galaxy.datatypes.text:Gfa1 from the datatype registry for extension gfa1. +galaxy.datatypes.registry DEBUG 2024-02-23 13:08:02,020 [pN:main,p:73244,tN:MainThread] Retrieved datatype module galaxy.datatypes.text:Gfa2 from the datatype registry for extension gfa2. +galaxy.datatypes.registry DEBUG 2024-02-23 13:08:02,020 [pN:main,p:73244,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:GenericAsn1 from the datatype registry for extension asn1. +galaxy.datatypes.registry DEBUG 2024-02-23 13:08:02,020 [pN:main,p:73244,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:GenericAsn1Binary from the datatype registry for extension asn1-binary. +galaxy.datatypes.registry DEBUG 2024-02-23 13:08:02,020 [pN:main,p:73244,tN:MainThread] Retrieved datatype module galaxy.datatypes.sequence:Axt from the datatype registry for extension axt. +galaxy.datatypes.registry DEBUG 2024-02-23 13:08:02,020 [pN:main,p:73244,tN:MainThread] Retrieved datatype module galaxy.datatypes.tabular:FeatureLocationIndex from the datatype registry for extension fli. +galaxy.datatypes.registry DEBUG 2024-02-23 13:08:02,021 [pN:main,p:73244,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:Bam from the datatype registry for extension bam. +galaxy.datatypes.registry DEBUG 2024-02-23 13:08:02,021 [pN:main,p:73244,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:Binary from the datatype registry for extension bai. +galaxy.datatypes.registry DEBUG 2024-02-23 13:08:02,021 [pN:main,p:73244,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:BamInputSorted from the datatype registry for extension qname_input_sorted.bam. +galaxy.datatypes.registry DEBUG 2024-02-23 13:08:02,021 [pN:main,p:73244,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:BamQuerynameSorted from the datatype registry for extension qname_sorted.bam. +galaxy.datatypes.registry DEBUG 2024-02-23 13:08:02,021 [pN:main,p:73244,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:BamNative from the datatype registry for extension unsorted.bam. +galaxy.datatypes.registry DEBUG 2024-02-23 13:08:02,021 [pN:main,p:73244,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:ProBam from the datatype registry for extension probam. +galaxy.datatypes.registry DEBUG 2024-02-23 13:08:02,021 [pN:main,p:73244,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:CRAM from the datatype registry for extension cram. +galaxy.datatypes.registry DEBUG 2024-02-23 13:08:02,021 [pN:main,p:73244,tN:MainThread] Retrieved datatype module galaxy.datatypes.interval:Bed from the datatype registry for extension bed. +galaxy.datatypes.registry DEBUG 2024-02-23 13:08:02,021 [pN:main,p:73244,tN:MainThread] Retrieved datatype module galaxy.datatypes.interval:BedGraph from the datatype registry for extension bedgraph. +galaxy.datatypes.registry DEBUG 2024-02-23 13:08:02,022 [pN:main,p:73244,tN:MainThread] Retrieved datatype module galaxy.datatypes.interval:BedStrict from the datatype registry for extension bedstrict. +galaxy.datatypes.registry DEBUG 2024-02-23 13:08:02,022 [pN:main,p:73244,tN:MainThread] Retrieved datatype module galaxy.datatypes.interval:Bed6 from the datatype registry for extension bed6. +galaxy.datatypes.registry DEBUG 2024-02-23 13:08:02,022 [pN:main,p:73244,tN:MainThread] Retrieved datatype module galaxy.datatypes.interval:Bed12 from the datatype registry for extension bed12. +galaxy.datatypes.registry DEBUG 2024-02-23 13:08:02,022 [pN:main,p:73244,tN:MainThread] Retrieved datatype module galaxy.datatypes.interval:ProBed from the datatype registry for extension probed. +galaxy.datatypes.registry DEBUG 2024-02-23 13:08:02,022 [pN:main,p:73244,tN:MainThread] Retrieved datatype module galaxy.datatypes.chrominfo:ChromInfo from the datatype registry for extension len. +galaxy.datatypes.registry DEBUG 2024-02-23 13:08:02,023 [pN:main,p:73244,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:DAA from the datatype registry for extension daa. +galaxy.datatypes.registry DEBUG 2024-02-23 13:08:02,023 [pN:main,p:73244,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:RMA6 from the datatype registry for extension rma6. +galaxy.datatypes.registry DEBUG 2024-02-23 13:08:02,023 [pN:main,p:73244,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:DMND from the datatype registry for extension dmnd. +galaxy.datatypes.registry DEBUG 2024-02-23 13:08:02,023 [pN:main,p:73244,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:Parquet from the datatype registry for extension parquet. +galaxy.datatypes.registry DEBUG 2024-02-23 13:08:02,023 [pN:main,p:73244,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:Idat from the datatype registry for extension idat. +galaxy.datatypes.registry DEBUG 2024-02-23 13:08:02,023 [pN:main,p:73244,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:BigBed from the datatype registry for extension bigbed. +galaxy.datatypes.registry DEBUG 2024-02-23 13:08:02,023 [pN:main,p:73244,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:BigWig from the datatype registry for extension bigwig. +galaxy.datatypes.registry DEBUG 2024-02-23 13:08:02,023 [pN:main,p:73244,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:Binary from the datatype registry for extension cxb. +galaxy.datatypes.registry DEBUG 2024-02-23 13:08:02,023 [pN:main,p:73244,tN:MainThread] Retrieved datatype module galaxy.datatypes.interval:ChromatinInteractions from the datatype registry for extension chrint. +galaxy.datatypes.registry DEBUG 2024-02-23 13:08:02,023 [pN:main,p:73244,tN:MainThread] Retrieved datatype module galaxy.datatypes.tabular:CSV from the datatype registry for extension csv. +galaxy.datatypes.registry DEBUG 2024-02-23 13:08:02,024 [pN:main,p:73244,tN:MainThread] Retrieved datatype module galaxy.datatypes.tabular:TSV from the datatype registry for extension tsv. +galaxy.datatypes.registry DEBUG 2024-02-23 13:08:02,024 [pN:main,p:73244,tN:MainThread] Retrieved datatype module galaxy.datatypes.tabular:TSV from the datatype registry for extension intermine_tabular. +galaxy.datatypes.registry DEBUG 2024-02-23 13:08:02,024 [pN:main,p:73244,tN:MainThread] Retrieved datatype module galaxy.datatypes.interval:CustomTrack from the datatype registry for extension customtrack. +galaxy.datatypes.registry DEBUG 2024-02-23 13:08:02,024 [pN:main,p:73244,tN:MainThread] Retrieved datatype module galaxy.datatypes.ngsindex:BowtieColorIndex from the datatype registry for extension bowtie_color_index. +galaxy.datatypes.registry DEBUG 2024-02-23 13:08:02,024 [pN:main,p:73244,tN:MainThread] Retrieved datatype module galaxy.datatypes.ngsindex:BowtieBaseIndex from the datatype registry for extension bowtie_base_index. +galaxy.datatypes.registry DEBUG 2024-02-23 13:08:02,025 [pN:main,p:73244,tN:MainThread] Retrieved datatype module galaxy.datatypes.sequence:csFasta from the datatype registry for extension csfasta. +galaxy.datatypes.registry DEBUG 2024-02-23 13:08:02,025 [pN:main,p:73244,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:Data from the datatype registry for extension data. +galaxy.datatypes.registry DEBUG 2024-02-23 13:08:02,025 [pN:main,p:73244,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:Binary from the datatype registry for extension gz. +galaxy.datatypes.registry DEBUG 2024-02-23 13:08:02,025 [pN:main,p:73244,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:Binary from the datatype registry for extension binary. +galaxy.datatypes.registry DEBUG 2024-02-23 13:08:02,025 [pN:main,p:73244,tN:MainThread] Retrieved datatype module galaxy.datatypes.text:Json from the datatype registry for extension d3_hierarchy. +galaxy.datatypes.registry DEBUG 2024-02-23 13:08:02,025 [pN:main,p:73244,tN:MainThread] Retrieved datatype module galaxy.datatypes.text:ImgtJson from the datatype registry for extension imgt.json. +galaxy.datatypes.registry DEBUG 2024-02-23 13:08:02,025 [pN:main,p:73244,tN:MainThread] Retrieved datatype module galaxy.datatypes.text:GeoJson from the datatype registry for extension geojson. +galaxy.datatypes.registry DEBUG 2024-02-23 13:08:02,025 [pN:main,p:73244,tN:MainThread] Retrieved datatype module galaxy.datatypes.text:Json from the datatype registry for extension data_manager_json. +galaxy.datatypes.registry DEBUG 2024-02-23 13:08:02,025 [pN:main,p:73244,tN:MainThread] Retrieved datatype module galaxy.datatypes.sequence:DotBracket from the datatype registry for extension dbn. +galaxy.datatypes.registry DEBUG 2024-02-23 13:08:02,025 [pN:main,p:73244,tN:MainThread] Retrieved datatype module galaxy.datatypes.tabular:Tabular from the datatype registry for extension fai. +galaxy.datatypes.registry DEBUG 2024-02-23 13:08:02,026 [pN:main,p:73244,tN:MainThread] Retrieved datatype module galaxy.datatypes.sequence:Fasta from the datatype registry for extension fasta. +galaxy.datatypes.registry DEBUG 2024-02-23 13:08:02,026 [pN:main,p:73244,tN:MainThread] Retrieved datatype module galaxy.datatypes.sequence:Fastg from the datatype registry for extension fastg. +galaxy.datatypes.registry DEBUG 2024-02-23 13:08:02,026 [pN:main,p:73244,tN:MainThread] Retrieved datatype module galaxy.datatypes.sequence:Fastq from the datatype registry for extension fastq. +galaxy.datatypes.registry DEBUG 2024-02-23 13:08:02,026 [pN:main,p:73244,tN:MainThread] Retrieved datatype module galaxy.datatypes.sequence:FastqSanger from the datatype registry for extension fastqsanger. +galaxy.datatypes.registry DEBUG 2024-02-23 13:08:02,026 [pN:main,p:73244,tN:MainThread] Retrieved datatype module galaxy.datatypes.sequence:FastqSolexa from the datatype registry for extension fastqsolexa. +galaxy.datatypes.registry DEBUG 2024-02-23 13:08:02,027 [pN:main,p:73244,tN:MainThread] Retrieved datatype module galaxy.datatypes.sequence:FastqCSSanger from the datatype registry for extension fastqcssanger. +galaxy.datatypes.registry DEBUG 2024-02-23 13:08:02,027 [pN:main,p:73244,tN:MainThread] Retrieved datatype module galaxy.datatypes.sequence:FastqIllumina from the datatype registry for extension fastqillumina. +galaxy.datatypes.registry DEBUG 2024-02-23 13:08:02,027 [pN:main,p:73244,tN:MainThread] Retrieved datatype module galaxy.datatypes.sequence:SequenceSplitLocations from the datatype registry for extension fqtoc. +galaxy.datatypes.registry DEBUG 2024-02-23 13:08:02,027 [pN:main,p:73244,tN:MainThread] Retrieved datatype module galaxy.datatypes.tabular:Eland from the datatype registry for extension eland. +galaxy.datatypes.registry DEBUG 2024-02-23 13:08:02,027 [pN:main,p:73244,tN:MainThread] Retrieved datatype module galaxy.datatypes.tabular:ElandMulti from the datatype registry for extension elandmulti. +galaxy.datatypes.registry DEBUG 2024-02-23 13:08:02,027 [pN:main,p:73244,tN:MainThread] Retrieved datatype module galaxy.datatypes.tracks:GeneTrack from the datatype registry for extension genetrack. +galaxy.datatypes.registry DEBUG 2024-02-23 13:08:02,027 [pN:main,p:73244,tN:MainThread] Retrieved datatype module galaxy.datatypes.interval:Gff from the datatype registry for extension gff. +galaxy.datatypes.registry DEBUG 2024-02-23 13:08:02,028 [pN:main,p:73244,tN:MainThread] Retrieved datatype module galaxy.datatypes.interval:Gff3 from the datatype registry for extension gff3. +galaxy.datatypes.registry DEBUG 2024-02-23 13:08:02,028 [pN:main,p:73244,tN:MainThread] Retrieved datatype module galaxy.datatypes.images:Gif from the datatype registry for extension gif. +galaxy.datatypes.registry DEBUG 2024-02-23 13:08:02,028 [pN:main,p:73244,tN:MainThread] Retrieved datatype module galaxy.datatypes.images:Gmaj from the datatype registry for extension gmaj.zip. +galaxy.datatypes.registry DEBUG 2024-02-23 13:08:02,028 [pN:main,p:73244,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension graph_dot. +galaxy.datatypes.registry DEBUG 2024-02-23 13:08:02,028 [pN:main,p:73244,tN:MainThread] Retrieved datatype module galaxy.datatypes.interval:Gtf from the datatype registry for extension gtf. +galaxy.datatypes.registry DEBUG 2024-02-23 13:08:02,028 [pN:main,p:73244,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:Binary from the datatype registry for extension toolshed.gz. +galaxy.datatypes.registry DEBUG 2024-02-23 13:08:02,029 [pN:main,p:73244,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:Binary from the datatype registry for extension hdf4. +galaxy.datatypes.registry DEBUG 2024-02-23 13:08:02,029 [pN:main,p:73244,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:H5 from the datatype registry for extension h5. +galaxy.datatypes.registry DEBUG 2024-02-23 13:08:02,029 [pN:main,p:73244,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:H5 from the datatype registry for extension scool. +galaxy.datatypes.registry DEBUG 2024-02-23 13:08:02,029 [pN:main,p:73244,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:Grib from the datatype registry for extension grib. +galaxy.datatypes.registry DEBUG 2024-02-23 13:08:02,029 [pN:main,p:73244,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:Loom from the datatype registry for extension loom. +galaxy.datatypes.registry DEBUG 2024-02-23 13:08:02,029 [pN:main,p:73244,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:Anndata from the datatype registry for extension h5ad. +galaxy.datatypes.registry DEBUG 2024-02-23 13:08:02,029 [pN:main,p:73244,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:Visium from the datatype registry for extension visium.tar.gz. +galaxy.datatypes.registry DEBUG 2024-02-23 13:08:02,029 [pN:main,p:73244,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:H5 from the datatype registry for extension mz5. +galaxy.datatypes.registry DEBUG 2024-02-23 13:08:02,029 [pN:main,p:73244,tN:MainThread] Retrieved datatype module galaxy.datatypes.text:Json from the datatype registry for extension hyphy_results.json. +galaxy.datatypes.registry DEBUG 2024-02-23 13:08:02,030 [pN:main,p:73244,tN:MainThread] Retrieved datatype module galaxy.datatypes.text:Json from the datatype registry for extension hivtrace. +galaxy.datatypes.registry DEBUG 2024-02-23 13:08:02,030 [pN:main,p:73244,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:Cool from the datatype registry for extension cool. +galaxy.datatypes.registry DEBUG 2024-02-23 13:08:02,030 [pN:main,p:73244,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:MCool from the datatype registry for extension mcool. +galaxy.datatypes.registry DEBUG 2024-02-23 13:08:02,030 [pN:main,p:73244,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:H5MLM from the datatype registry for extension h5mlm. +galaxy.datatypes.registry DEBUG 2024-02-23 13:08:02,030 [pN:main,p:73244,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:LudwigModel from the datatype registry for extension ludwig_model. +galaxy.datatypes.registry DEBUG 2024-02-23 13:08:02,030 [pN:main,p:73244,tN:MainThread] Retrieved datatype module galaxy.datatypes.text:Html from the datatype registry for extension html. +galaxy.datatypes.registry DEBUG 2024-02-23 13:08:02,030 [pN:main,p:73244,tN:MainThread] Retrieved datatype module galaxy.datatypes.text:Html from the datatype registry for extension ludwig_report.html. +galaxy.datatypes.registry DEBUG 2024-02-23 13:08:02,030 [pN:main,p:73244,tN:MainThread] Retrieved datatype module galaxy.datatypes.interval:Interval from the datatype registry for extension interval. +galaxy.datatypes.registry DEBUG 2024-02-23 13:08:02,030 [pN:main,p:73244,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:Binary from the datatype registry for extension jellyfish. +galaxy.datatypes.registry DEBUG 2024-02-23 13:08:02,031 [pN:main,p:73244,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:Binary from the datatype registry for extension ktab. +galaxy.datatypes.registry DEBUG 2024-02-23 13:08:02,031 [pN:main,p:73244,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:Binary from the datatype registry for extension hist. +galaxy.datatypes.registry DEBUG 2024-02-23 13:08:02,031 [pN:main,p:73244,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:Binary from the datatype registry for extension prof. +galaxy.datatypes.registry DEBUG 2024-02-23 13:08:02,112 [pN:main,p:73244,tN:MainThread] Retrieved datatype module galaxy.datatypes.isa:IsaTab from the datatype registry for extension isa-tab. +galaxy.datatypes.registry DEBUG 2024-02-23 13:08:02,113 [pN:main,p:73244,tN:MainThread] Retrieved datatype module galaxy.datatypes.isa:IsaJson from the datatype registry for extension isa-json. +galaxy.datatypes.registry DEBUG 2024-02-23 13:08:02,113 [pN:main,p:73244,tN:MainThread] Retrieved datatype module galaxy.datatypes.tabular:Tabular from the datatype registry for extension picard_interval_list. +galaxy.datatypes.registry DEBUG 2024-02-23 13:08:02,113 [pN:main,p:73244,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension gatk_interval. +galaxy.datatypes.registry DEBUG 2024-02-23 13:08:02,113 [pN:main,p:73244,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension gatk_report. +galaxy.datatypes.registry DEBUG 2024-02-23 13:08:02,113 [pN:main,p:73244,tN:MainThread] Retrieved datatype module galaxy.datatypes.tabular:Tabular from the datatype registry for extension gatk_dbsnp. +galaxy.datatypes.registry DEBUG 2024-02-23 13:08:02,113 [pN:main,p:73244,tN:MainThread] Retrieved datatype module galaxy.datatypes.tabular:Tabular from the datatype registry for extension gatk_tranche. +galaxy.datatypes.registry DEBUG 2024-02-23 13:08:02,114 [pN:main,p:73244,tN:MainThread] Retrieved datatype module galaxy.datatypes.tabular:Tabular from the datatype registry for extension gatk_recal. +galaxy.datatypes.registry DEBUG 2024-02-23 13:08:02,114 [pN:main,p:73244,tN:MainThread] Retrieved datatype module galaxy.datatypes.tabular:Tabular from the datatype registry for extension cnn. +galaxy.datatypes.registry DEBUG 2024-02-23 13:08:02,114 [pN:main,p:73244,tN:MainThread] Retrieved datatype module galaxy.datatypes.tabular:Tabular from the datatype registry for extension cns. +galaxy.datatypes.registry DEBUG 2024-02-23 13:08:02,114 [pN:main,p:73244,tN:MainThread] Retrieved datatype module galaxy.datatypes.tabular:Tabular from the datatype registry for extension cnr. +galaxy.datatypes.registry DEBUG 2024-02-23 13:08:02,114 [pN:main,p:73244,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension hhr. +galaxy.datatypes.registry DEBUG 2024-02-23 13:08:02,114 [pN:main,p:73244,tN:MainThread] Retrieved datatype module galaxy.datatypes.images:Jpg from the datatype registry for extension jpg. +galaxy.datatypes.registry DEBUG 2024-02-23 13:08:02,115 [pN:main,p:73244,tN:MainThread] Retrieved datatype module galaxy.datatypes.images:Tiff from the datatype registry for extension tiff. +galaxy.datatypes.registry DEBUG 2024-02-23 13:08:02,115 [pN:main,p:73244,tN:MainThread] Retrieved datatype module galaxy.datatypes.images:Tiff from the datatype registry for extension tf2. +galaxy.datatypes.registry DEBUG 2024-02-23 13:08:02,115 [pN:main,p:73244,tN:MainThread] Retrieved datatype module galaxy.datatypes.images:Tiff from the datatype registry for extension tf8. +galaxy.datatypes.registry DEBUG 2024-02-23 13:08:02,115 [pN:main,p:73244,tN:MainThread] Retrieved datatype module galaxy.datatypes.images:Tiff from the datatype registry for extension btf. +galaxy.datatypes.registry DEBUG 2024-02-23 13:08:02,115 [pN:main,p:73244,tN:MainThread] Retrieved datatype module galaxy.datatypes.images:Tiff from the datatype registry for extension tif. +galaxy.datatypes.registry DEBUG 2024-02-23 13:08:02,115 [pN:main,p:73244,tN:MainThread] Retrieved datatype module galaxy.datatypes.images:Tiff from the datatype registry for extension svs. +galaxy.datatypes.registry DEBUG 2024-02-23 13:08:02,115 [pN:main,p:73244,tN:MainThread] Retrieved datatype module galaxy.datatypes.images:Tiff from the datatype registry for extension scn. +galaxy.datatypes.registry DEBUG 2024-02-23 13:08:02,115 [pN:main,p:73244,tN:MainThread] Retrieved datatype module galaxy.datatypes.images:Tiff from the datatype registry for extension bif. +galaxy.datatypes.registry DEBUG 2024-02-23 13:08:02,115 [pN:main,p:73244,tN:MainThread] Retrieved datatype module galaxy.datatypes.images:OMETiff from the datatype registry for extension ome.tiff. +galaxy.datatypes.registry DEBUG 2024-02-23 13:08:02,116 [pN:main,p:73244,tN:MainThread] Retrieved datatype module galaxy.datatypes.images:Hamamatsu from the datatype registry for extension vms. +galaxy.datatypes.registry DEBUG 2024-02-23 13:08:02,116 [pN:main,p:73244,tN:MainThread] Retrieved datatype module galaxy.datatypes.images:Hamamatsu from the datatype registry for extension vmu. +galaxy.datatypes.registry DEBUG 2024-02-23 13:08:02,116 [pN:main,p:73244,tN:MainThread] Retrieved datatype module galaxy.datatypes.images:Hamamatsu from the datatype registry for extension ndpi. +galaxy.datatypes.registry DEBUG 2024-02-23 13:08:02,116 [pN:main,p:73244,tN:MainThread] Retrieved datatype module galaxy.datatypes.images:Mirax from the datatype registry for extension mrxs. +galaxy.datatypes.registry DEBUG 2024-02-23 13:08:02,116 [pN:main,p:73244,tN:MainThread] Retrieved datatype module galaxy.datatypes.images:Sakura from the datatype registry for extension svslide. +galaxy.datatypes.registry DEBUG 2024-02-23 13:08:02,116 [pN:main,p:73244,tN:MainThread] Retrieved datatype module galaxy.datatypes.images:Bmp from the datatype registry for extension bmp. +galaxy.datatypes.registry DEBUG 2024-02-23 13:08:02,116 [pN:main,p:73244,tN:MainThread] Retrieved datatype module galaxy.datatypes.images:Im from the datatype registry for extension im. +galaxy.datatypes.registry DEBUG 2024-02-23 13:08:02,116 [pN:main,p:73244,tN:MainThread] Retrieved datatype module galaxy.datatypes.images:Pcd from the datatype registry for extension pcd. +galaxy.datatypes.registry DEBUG 2024-02-23 13:08:02,116 [pN:main,p:73244,tN:MainThread] Retrieved datatype module galaxy.datatypes.images:Pcx from the datatype registry for extension pcx. +galaxy.datatypes.registry DEBUG 2024-02-23 13:08:02,116 [pN:main,p:73244,tN:MainThread] Retrieved datatype module galaxy.datatypes.images:Ppm from the datatype registry for extension ppm. +galaxy.datatypes.registry DEBUG 2024-02-23 13:08:02,117 [pN:main,p:73244,tN:MainThread] Retrieved datatype module galaxy.datatypes.images:Psd from the datatype registry for extension psd. +galaxy.datatypes.registry DEBUG 2024-02-23 13:08:02,117 [pN:main,p:73244,tN:MainThread] Retrieved datatype module galaxy.datatypes.images:Xbm from the datatype registry for extension xbm. +galaxy.datatypes.registry DEBUG 2024-02-23 13:08:02,117 [pN:main,p:73244,tN:MainThread] Retrieved datatype module galaxy.datatypes.images:Xpm from the datatype registry for extension xpm. +galaxy.datatypes.registry DEBUG 2024-02-23 13:08:02,117 [pN:main,p:73244,tN:MainThread] Retrieved datatype module galaxy.datatypes.images:Rgb from the datatype registry for extension rgb. +galaxy.datatypes.registry DEBUG 2024-02-23 13:08:02,117 [pN:main,p:73244,tN:MainThread] Retrieved datatype module galaxy.datatypes.images:Pbm from the datatype registry for extension pbm. +galaxy.datatypes.registry DEBUG 2024-02-23 13:08:02,117 [pN:main,p:73244,tN:MainThread] Retrieved datatype module galaxy.datatypes.images:Pgm from the datatype registry for extension pgm. +galaxy.datatypes.registry DEBUG 2024-02-23 13:08:02,117 [pN:main,p:73244,tN:MainThread] Retrieved datatype module galaxy.datatypes.images:Nrrd from the datatype registry for extension nrrd. +galaxy.datatypes.registry DEBUG 2024-02-23 13:08:02,117 [pN:main,p:73244,tN:MainThread] Retrieved datatype module galaxy.datatypes.images:Nrrd from the datatype registry for extension nhdr. +galaxy.datatypes.registry DEBUG 2024-02-23 13:08:02,117 [pN:main,p:73244,tN:MainThread] Retrieved datatype module galaxy.datatypes.sequence:RNADotPlotMatrix from the datatype registry for extension rna_eps. +galaxy.datatypes.registry DEBUG 2024-02-23 13:08:02,118 [pN:main,p:73244,tN:MainThread] Retrieved datatype module galaxy.datatypes.qiime2:QIIME2Artifact from the datatype registry for extension qza. +galaxy.datatypes.registry DEBUG 2024-02-23 13:08:02,118 [pN:main,p:73244,tN:MainThread] Retrieved datatype module galaxy.datatypes.qiime2:QIIME2Visualization from the datatype registry for extension qzv. +galaxy.datatypes.registry DEBUG 2024-02-23 13:08:02,118 [pN:main,p:73244,tN:MainThread] Retrieved datatype module galaxy.datatypes.qiime2:QIIME2Metadata from the datatype registry for extension qiime2.tabular. +galaxy.datatypes.registry DEBUG 2024-02-23 13:08:02,118 [pN:main,p:73244,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:CompressedZipArchive from the datatype registry for extension zip. +galaxy.datatypes.registry DEBUG 2024-02-23 13:08:02,119 [pN:main,p:73244,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:CompressedZipArchive from the datatype registry for extension ncbi_genome_dataset.zip. +galaxy.datatypes.registry DEBUG 2024-02-23 13:08:02,119 [pN:main,p:73244,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:CompressedArchive from the datatype registry for extension tar. +galaxy.datatypes.registry DEBUG 2024-02-23 13:08:02,119 [pN:main,p:73244,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:Directory from the datatype registry for extension directory. +galaxy.datatypes.registry DEBUG 2024-02-23 13:08:02,119 [pN:main,p:73244,tN:MainThread] Retrieved datatype module galaxy.datatypes.text:Yaml from the datatype registry for extension yaml. +galaxy.datatypes.registry DEBUG 2024-02-23 13:08:02,119 [pN:main,p:73244,tN:MainThread] Retrieved datatype module galaxy.datatypes.tabular:Tabular from the datatype registry for extension mrm. +galaxy.datatypes.registry DEBUG 2024-02-23 13:08:02,121 [pN:main,p:73244,tN:MainThread] Retrieved datatype module galaxy.datatypes.proteomics:Dta from the datatype registry for extension dta. +galaxy.datatypes.registry DEBUG 2024-02-23 13:08:02,121 [pN:main,p:73244,tN:MainThread] Retrieved datatype module galaxy.datatypes.proteomics:Dta2d from the datatype registry for extension dta2d. +galaxy.datatypes.registry DEBUG 2024-02-23 13:08:02,122 [pN:main,p:73244,tN:MainThread] Retrieved datatype module galaxy.datatypes.proteomics:Edta from the datatype registry for extension edta. +galaxy.datatypes.registry DEBUG 2024-02-23 13:08:02,122 [pN:main,p:73244,tN:MainThread] Retrieved datatype module galaxy.datatypes.proteomics:PepXml from the datatype registry for extension pepxml. +galaxy.datatypes.registry DEBUG 2024-02-23 13:08:02,122 [pN:main,p:73244,tN:MainThread] Retrieved datatype module galaxy.datatypes.proteomics:PepXml from the datatype registry for extension raw_pepxml. +galaxy.datatypes.registry DEBUG 2024-02-23 13:08:02,122 [pN:main,p:73244,tN:MainThread] Retrieved datatype module galaxy.datatypes.proteomics:PepXml from the datatype registry for extension peptideprophet_pepxml. +galaxy.datatypes.registry DEBUG 2024-02-23 13:08:02,122 [pN:main,p:73244,tN:MainThread] Retrieved datatype module galaxy.datatypes.proteomics:PepXml from the datatype registry for extension interprophet_pepxml. +galaxy.datatypes.registry DEBUG 2024-02-23 13:08:02,122 [pN:main,p:73244,tN:MainThread] Retrieved datatype module galaxy.datatypes.proteomics:ProtXML from the datatype registry for extension protxml. +galaxy.datatypes.registry DEBUG 2024-02-23 13:08:02,122 [pN:main,p:73244,tN:MainThread] Retrieved datatype module galaxy.datatypes.proteomics:ParamXml from the datatype registry for extension paramxml. +galaxy.datatypes.registry DEBUG 2024-02-23 13:08:02,122 [pN:main,p:73244,tN:MainThread] Retrieved datatype module galaxy.datatypes.proteomics:Kroenik from the datatype registry for extension kroenik. +galaxy.datatypes.registry DEBUG 2024-02-23 13:08:02,122 [pN:main,p:73244,tN:MainThread] Retrieved datatype module galaxy.datatypes.proteomics:PepList from the datatype registry for extension peplist. +galaxy.datatypes.registry DEBUG 2024-02-23 13:08:02,123 [pN:main,p:73244,tN:MainThread] Retrieved datatype module galaxy.datatypes.proteomics:PSMS from the datatype registry for extension psms. +galaxy.datatypes.registry DEBUG 2024-02-23 13:08:02,123 [pN:main,p:73244,tN:MainThread] Retrieved datatype module galaxy.datatypes.proteomics:PepXmlReport from the datatype registry for extension pepxml.tsv. +galaxy.datatypes.registry DEBUG 2024-02-23 13:08:02,123 [pN:main,p:73244,tN:MainThread] Retrieved datatype module galaxy.datatypes.proteomics:ProtXmlReport from the datatype registry for extension protxml.tsv. +galaxy.datatypes.registry DEBUG 2024-02-23 13:08:02,123 [pN:main,p:73244,tN:MainThread] Retrieved datatype module galaxy.datatypes.proteomics:MascotDat from the datatype registry for extension mascotdat. +galaxy.datatypes.registry DEBUG 2024-02-23 13:08:02,123 [pN:main,p:73244,tN:MainThread] Retrieved datatype module galaxy.datatypes.proteomics:MzIdentML from the datatype registry for extension mzid. +galaxy.datatypes.registry DEBUG 2024-02-23 13:08:02,123 [pN:main,p:73244,tN:MainThread] Retrieved datatype module galaxy.datatypes.proteomics:IdXML from the datatype registry for extension idxml. +galaxy.datatypes.registry DEBUG 2024-02-23 13:08:02,123 [pN:main,p:73244,tN:MainThread] Retrieved datatype module galaxy.datatypes.proteomics:TandemXML from the datatype registry for extension tandem. +galaxy.datatypes.registry DEBUG 2024-02-23 13:08:02,123 [pN:main,p:73244,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension sirius.ms. +galaxy.datatypes.registry DEBUG 2024-02-23 13:08:02,123 [pN:main,p:73244,tN:MainThread] Retrieved datatype module galaxy.datatypes.proteomics:ThermoRAW from the datatype registry for extension thermo.raw. +galaxy.datatypes.registry DEBUG 2024-02-23 13:08:02,123 [pN:main,p:73244,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:BafTar from the datatype registry for extension brukerbaf.d.tar. +galaxy.datatypes.registry DEBUG 2024-02-23 13:08:02,123 [pN:main,p:73244,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:YepTar from the datatype registry for extension agilentbrukeryep.d.tar. +galaxy.datatypes.registry DEBUG 2024-02-23 13:08:02,124 [pN:main,p:73244,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:TdfTar from the datatype registry for extension brukertdf.d.tar. +galaxy.datatypes.registry DEBUG 2024-02-23 13:08:02,124 [pN:main,p:73244,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:MassHunterTar from the datatype registry for extension agilentmasshunter.d.tar. +galaxy.datatypes.registry DEBUG 2024-02-23 13:08:02,124 [pN:main,p:73244,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:MassLynxTar from the datatype registry for extension watersmasslynx.raw.tar. +galaxy.datatypes.registry DEBUG 2024-02-23 13:08:02,124 [pN:main,p:73244,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:WiffTar from the datatype registry for extension wiff.tar. +galaxy.datatypes.registry DEBUG 2024-02-23 13:08:02,124 [pN:main,p:73244,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:Wiff2Tar from the datatype registry for extension wiff2.tar. +galaxy.datatypes.registry DEBUG 2024-02-23 13:08:02,124 [pN:main,p:73244,tN:MainThread] Retrieved datatype module galaxy.datatypes.proteomics:MascotXML from the datatype registry for extension mascotxml. +galaxy.datatypes.registry DEBUG 2024-02-23 13:08:02,124 [pN:main,p:73244,tN:MainThread] Retrieved datatype module galaxy.datatypes.proteomics:MzTab from the datatype registry for extension mztab. +galaxy.datatypes.registry DEBUG 2024-02-23 13:08:02,124 [pN:main,p:73244,tN:MainThread] Retrieved datatype module galaxy.datatypes.proteomics:MzTab2 from the datatype registry for extension mztab2. +galaxy.datatypes.registry DEBUG 2024-02-23 13:08:02,124 [pN:main,p:73244,tN:MainThread] Retrieved datatype module galaxy.datatypes.proteomics:MzML from the datatype registry for extension mzml. +galaxy.datatypes.registry DEBUG 2024-02-23 13:08:02,124 [pN:main,p:73244,tN:MainThread] Retrieved datatype module galaxy.datatypes.proteomics:NmrML from the datatype registry for extension nmrml. +galaxy.datatypes.registry DEBUG 2024-02-23 13:08:02,124 [pN:main,p:73244,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:Meryldb from the datatype registry for extension meryldb. +galaxy.datatypes.registry DEBUG 2024-02-23 13:08:02,125 [pN:main,p:73244,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:Bref3 from the datatype registry for extension bref3. +galaxy.datatypes.registry DEBUG 2024-02-23 13:08:02,125 [pN:main,p:73244,tN:MainThread] Retrieved datatype module galaxy.datatypes.proteomics:Mgf from the datatype registry for extension mgf. +galaxy.datatypes.registry DEBUG 2024-02-23 13:08:02,125 [pN:main,p:73244,tN:MainThread] Retrieved datatype module galaxy.datatypes.proteomics:Wiff from the datatype registry for extension wiff. +galaxy.datatypes.registry DEBUG 2024-02-23 13:08:02,125 [pN:main,p:73244,tN:MainThread] Retrieved datatype module galaxy.datatypes.proteomics:Wiff2 from the datatype registry for extension wiff2. +galaxy.datatypes.registry DEBUG 2024-02-23 13:08:02,125 [pN:main,p:73244,tN:MainThread] Retrieved datatype module galaxy.datatypes.proteomics:MzXML from the datatype registry for extension mzxml. +galaxy.datatypes.registry DEBUG 2024-02-23 13:08:02,125 [pN:main,p:73244,tN:MainThread] Retrieved datatype module galaxy.datatypes.proteomics:MzData from the datatype registry for extension mzdata. +galaxy.datatypes.registry DEBUG 2024-02-23 13:08:02,125 [pN:main,p:73244,tN:MainThread] Retrieved datatype module galaxy.datatypes.proteomics:Ms2 from the datatype registry for extension ms2. +galaxy.datatypes.registry DEBUG 2024-02-23 13:08:02,125 [pN:main,p:73244,tN:MainThread] Retrieved datatype module galaxy.datatypes.proteomics:MzQuantML from the datatype registry for extension mzq. +galaxy.datatypes.registry DEBUG 2024-02-23 13:08:02,125 [pN:main,p:73244,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:SQlite from the datatype registry for extension sqlite. +galaxy.datatypes.registry DEBUG 2024-02-23 13:08:02,126 [pN:main,p:73244,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:MzSQlite from the datatype registry for extension mz.sqlite. +galaxy.datatypes.registry DEBUG 2024-02-23 13:08:02,126 [pN:main,p:73244,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:OSW from the datatype registry for extension osw. +galaxy.datatypes.registry DEBUG 2024-02-23 13:08:02,126 [pN:main,p:73244,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:PQP from the datatype registry for extension pqp. +galaxy.datatypes.registry DEBUG 2024-02-23 13:08:02,126 [pN:main,p:73244,tN:MainThread] Retrieved datatype module galaxy.datatypes.proteomics:TraML from the datatype registry for extension traml. +galaxy.datatypes.registry DEBUG 2024-02-23 13:08:02,126 [pN:main,p:73244,tN:MainThread] Retrieved datatype module galaxy.datatypes.proteomics:TrafoXML from the datatype registry for extension trafoxml. +galaxy.datatypes.registry DEBUG 2024-02-23 13:08:02,126 [pN:main,p:73244,tN:MainThread] Retrieved datatype module galaxy.datatypes.proteomics:FeatureXML from the datatype registry for extension featurexml. +galaxy.datatypes.registry DEBUG 2024-02-23 13:08:02,126 [pN:main,p:73244,tN:MainThread] Retrieved datatype module galaxy.datatypes.proteomics:ConsensusXML from the datatype registry for extension consensusxml. +galaxy.datatypes.registry DEBUG 2024-02-23 13:08:02,126 [pN:main,p:73244,tN:MainThread] Retrieved datatype module galaxy.datatypes.proteomics:UniProtXML from the datatype registry for extension uniprotxml. +galaxy.datatypes.registry DEBUG 2024-02-23 13:08:02,126 [pN:main,p:73244,tN:MainThread] Retrieved datatype module galaxy.datatypes.proteomics:XquestXML from the datatype registry for extension xquest.xml. +galaxy.datatypes.registry DEBUG 2024-02-23 13:08:02,126 [pN:main,p:73244,tN:MainThread] Retrieved datatype module galaxy.datatypes.proteomics:XquestSpecXML from the datatype registry for extension spec.xml. +galaxy.datatypes.registry DEBUG 2024-02-23 13:08:02,126 [pN:main,p:73244,tN:MainThread] Retrieved datatype module galaxy.datatypes.proteomics:QCML from the datatype registry for extension qcml. +galaxy.datatypes.registry DEBUG 2024-02-23 13:08:02,126 [pN:main,p:73244,tN:MainThread] Retrieved datatype module galaxy.datatypes.text:Json from the datatype registry for extension mzqc. +galaxy.datatypes.registry DEBUG 2024-02-23 13:08:02,127 [pN:main,p:73244,tN:MainThread] Retrieved datatype module galaxy.datatypes.proteomics:Msp from the datatype registry for extension msp. +galaxy.datatypes.registry DEBUG 2024-02-23 13:08:02,127 [pN:main,p:73244,tN:MainThread] Retrieved datatype module galaxy.datatypes.proteomics:SPLibNoIndex from the datatype registry for extension splib_noindex. +galaxy.datatypes.registry DEBUG 2024-02-23 13:08:02,127 [pN:main,p:73244,tN:MainThread] Retrieved datatype module galaxy.datatypes.proteomics:SPLib from the datatype registry for extension splib. +galaxy.datatypes.registry DEBUG 2024-02-23 13:08:02,127 [pN:main,p:73244,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:BlibSQlite from the datatype registry for extension blib. +galaxy.datatypes.registry DEBUG 2024-02-23 13:08:02,127 [pN:main,p:73244,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:DlibSQlite from the datatype registry for extension dlib. +galaxy.datatypes.registry DEBUG 2024-02-23 13:08:02,127 [pN:main,p:73244,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:ElibSQlite from the datatype registry for extension elib. +galaxy.datatypes.registry DEBUG 2024-02-23 13:08:02,127 [pN:main,p:73244,tN:MainThread] Retrieved datatype module galaxy.datatypes.proteomics:XHunterAslFormat from the datatype registry for extension hlf. +galaxy.datatypes.registry DEBUG 2024-02-23 13:08:02,127 [pN:main,p:73244,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:IdpDB from the datatype registry for extension idpdb. +galaxy.datatypes.registry DEBUG 2024-02-23 13:08:02,127 [pN:main,p:73244,tN:MainThread] Retrieved datatype module galaxy.datatypes.proteomics:Sf3 from the datatype registry for extension sf3. +galaxy.datatypes.registry DEBUG 2024-02-23 13:08:02,127 [pN:main,p:73244,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:Binary from the datatype registry for extension cps. +galaxy.datatypes.registry DEBUG 2024-02-23 13:08:02,128 [pN:main,p:73244,tN:MainThread] Retrieved datatype module galaxy.datatypes.tabular:ConnectivityTable from the datatype registry for extension ct. +galaxy.datatypes.registry DEBUG 2024-02-23 13:08:02,128 [pN:main,p:73244,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:PostgresqlArchive from the datatype registry for extension postgresql. +galaxy.datatypes.registry DEBUG 2024-02-23 13:08:02,128 [pN:main,p:73244,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:MongoDBArchive from the datatype registry for extension mongodb. +galaxy.datatypes.registry DEBUG 2024-02-23 13:08:02,128 [pN:main,p:73244,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:GeneNoteBook from the datatype registry for extension genenotebook. +galaxy.datatypes.registry DEBUG 2024-02-23 13:08:02,128 [pN:main,p:73244,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:SearchGuiArchive from the datatype registry for extension searchgui_archive. +galaxy.datatypes.registry DEBUG 2024-02-23 13:08:02,128 [pN:main,p:73244,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:Fast5Archive from the datatype registry for extension fast5.tar. +galaxy.datatypes.registry DEBUG 2024-02-23 13:08:02,128 [pN:main,p:73244,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:Fast5ArchiveGz from the datatype registry for extension fast5.tar.gz. +galaxy.datatypes.registry DEBUG 2024-02-23 13:08:02,128 [pN:main,p:73244,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:Fast5ArchiveBz2 from the datatype registry for extension fast5.tar.bz2. +galaxy.datatypes.registry DEBUG 2024-02-23 13:08:02,128 [pN:main,p:73244,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:CompressedArchive from the datatype registry for extension peptideshaker_archive. +galaxy.datatypes.registry DEBUG 2024-02-23 13:08:02,128 [pN:main,p:73244,tN:MainThread] Retrieved datatype module galaxy.datatypes.tabular:Tabular from the datatype registry for extension percin. +galaxy.datatypes.registry DEBUG 2024-02-23 13:08:02,129 [pN:main,p:73244,tN:MainThread] Retrieved datatype module galaxy.datatypes.xml:GenericXml from the datatype registry for extension percout. +galaxy.datatypes.registry DEBUG 2024-02-23 13:08:02,129 [pN:main,p:73244,tN:MainThread] Retrieved datatype module galaxy.datatypes.tabular:Tabular from the datatype registry for extension hardklor. +galaxy.datatypes.registry DEBUG 2024-02-23 13:08:02,129 [pN:main,p:73244,tN:MainThread] Retrieved datatype module galaxy.datatypes.tabular:Tabular from the datatype registry for extension kronik. +galaxy.datatypes.registry DEBUG 2024-02-23 13:08:02,129 [pN:main,p:73244,tN:MainThread] Retrieved datatype module galaxy.datatypes.proteomics:ImzML from the datatype registry for extension imzml. +galaxy.datatypes.registry DEBUG 2024-02-23 13:08:02,129 [pN:main,p:73244,tN:MainThread] Retrieved datatype module galaxy.datatypes.images:Analyze75 from the datatype registry for extension analyze75. +galaxy.datatypes.registry DEBUG 2024-02-23 13:08:02,129 [pN:main,p:73244,tN:MainThread] Retrieved datatype module galaxy.datatypes.images:Nifti1 from the datatype registry for extension nii1. +galaxy.datatypes.registry DEBUG 2024-02-23 13:08:02,129 [pN:main,p:73244,tN:MainThread] Retrieved datatype module galaxy.datatypes.images:Nifti2 from the datatype registry for extension nii2. +galaxy.datatypes.registry DEBUG 2024-02-23 13:08:02,130 [pN:main,p:73244,tN:MainThread] Retrieved datatype module galaxy.datatypes.images:Gifti from the datatype registry for extension gii. +galaxy.datatypes.registry DEBUG 2024-02-23 13:08:02,130 [pN:main,p:73244,tN:MainThread] Retrieved datatype module galaxy.datatypes.images:Tck from the datatype registry for extension tck. +galaxy.datatypes.registry DEBUG 2024-02-23 13:08:02,130 [pN:main,p:73244,tN:MainThread] Retrieved datatype module galaxy.datatypes.images:Trk from the datatype registry for extension trk. +galaxy.datatypes.registry DEBUG 2024-02-23 13:08:02,130 [pN:main,p:73244,tN:MainThread] Retrieved datatype module galaxy.datatypes.images:Mrc2014 from the datatype registry for extension mrc. +galaxy.datatypes.registry DEBUG 2024-02-23 13:08:02,130 [pN:main,p:73244,tN:MainThread] Retrieved datatype module galaxy.datatypes.images:Star from the datatype registry for extension star. +galaxy.datatypes.registry DEBUG 2024-02-23 13:08:02,130 [pN:main,p:73244,tN:MainThread] Retrieved datatype module galaxy.datatypes.proteomics:PEFF from the datatype registry for extension peff. +galaxy.datatypes.registry DEBUG 2024-02-23 13:08:02,130 [pN:main,p:73244,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension toml. +galaxy.datatypes.registry DEBUG 2024-02-23 13:08:02,131 [pN:main,p:73244,tN:MainThread] Retrieved datatype module galaxy.datatypes.flow:FCS from the datatype registry for extension fcs. +galaxy.datatypes.registry DEBUG 2024-02-23 13:08:02,131 [pN:main,p:73244,tN:MainThread] Retrieved datatype module galaxy.datatypes.tabular:Tabular from the datatype registry for extension flowtext. +galaxy.datatypes.registry DEBUG 2024-02-23 13:08:02,131 [pN:main,p:73244,tN:MainThread] Retrieved datatype module galaxy.datatypes.tabular:Tabular from the datatype registry for extension flowclr. +galaxy.datatypes.registry DEBUG 2024-02-23 13:08:02,131 [pN:main,p:73244,tN:MainThread] Retrieved datatype module galaxy.datatypes.tabular:Tabular from the datatype registry for extension flowmfi. +galaxy.datatypes.registry DEBUG 2024-02-23 13:08:02,131 [pN:main,p:73244,tN:MainThread] Retrieved datatype module galaxy.datatypes.tabular:Tabular from the datatype registry for extension flowstat1. +galaxy.datatypes.registry DEBUG 2024-02-23 13:08:02,131 [pN:main,p:73244,tN:MainThread] Retrieved datatype module galaxy.datatypes.tabular:Tabular from the datatype registry for extension flowstat2. +galaxy.datatypes.registry DEBUG 2024-02-23 13:08:02,131 [pN:main,p:73244,tN:MainThread] Retrieved datatype module galaxy.datatypes.tabular:Tabular from the datatype registry for extension flowstat3. +galaxy.datatypes.registry DEBUG 2024-02-23 13:08:02,132 [pN:main,p:73244,tN:MainThread] Retrieved datatype module galaxy.datatypes.tabular:Tabular from the datatype registry for extension flowscore. +galaxy.datatypes.registry DEBUG 2024-02-23 13:08:02,132 [pN:main,p:73244,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:RData from the datatype registry for extension flowframe. +galaxy.datatypes.registry DEBUG 2024-02-23 13:08:02,132 [pN:main,p:73244,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:RData from the datatype registry for extension fsom. +galaxy.datatypes.registry DEBUG 2024-02-23 13:08:02,132 [pN:main,p:73244,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:RData from the datatype registry for extension flowset. +galaxy.datatypes.registry DEBUG 2024-02-23 13:08:02,132 [pN:main,p:73244,tN:MainThread] Retrieved datatype module galaxy.datatypes.tabular:Tabular from the datatype registry for extension metacyto_clr.txt. +galaxy.datatypes.registry DEBUG 2024-02-23 13:08:02,133 [pN:main,p:73244,tN:MainThread] Retrieved datatype module galaxy.datatypes.metacyto:mSummary from the datatype registry for extension metacyto_summary.txt. +galaxy.datatypes.registry DEBUG 2024-02-23 13:08:02,133 [pN:main,p:73244,tN:MainThread] Retrieved datatype module galaxy.datatypes.metacyto:mStats from the datatype registry for extension metacyto_stats.txt. +galaxy.datatypes.registry DEBUG 2024-02-23 13:08:02,133 [pN:main,p:73244,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:CompressedArchive from the datatype registry for extension deeptools_compute_matrix_archive. +galaxy.datatypes.registry DEBUG 2024-02-23 13:08:02,133 [pN:main,p:73244,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:CompressedArchive from the datatype registry for extension deeptools_coverage_matrix. +galaxy.datatypes.registry DEBUG 2024-02-23 13:08:02,133 [pN:main,p:73244,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:NetCDF from the datatype registry for extension netcdf. +galaxy.datatypes.registry DEBUG 2024-02-23 13:08:02,133 [pN:main,p:73244,tN:MainThread] Retrieved datatype module galaxy.datatypes.images:Eps from the datatype registry for extension eps. +galaxy.datatypes.registry DEBUG 2024-02-23 13:08:02,133 [pN:main,p:73244,tN:MainThread] Retrieved datatype module galaxy.datatypes.images:Rast from the datatype registry for extension rast. +galaxy.datatypes.registry DEBUG 2024-02-23 13:08:02,133 [pN:main,p:73244,tN:MainThread] Retrieved datatype module galaxy.datatypes.images:Laj from the datatype registry for extension laj. +galaxy.datatypes.registry DEBUG 2024-02-23 13:08:02,133 [pN:main,p:73244,tN:MainThread] Retrieved datatype module galaxy.datatypes.sequence:Lav from the datatype registry for extension lav. +galaxy.datatypes.registry DEBUG 2024-02-23 13:08:02,134 [pN:main,p:73244,tN:MainThread] Retrieved datatype module galaxy.datatypes.sequence:Maf from the datatype registry for extension maf. +galaxy.datatypes.registry DEBUG 2024-02-23 13:08:02,134 [pN:main,p:73244,tN:MainThread] Retrieved datatype module galaxy.datatypes.sequence:MafCustomTrack from the datatype registry for extension mafcustomtrack. +galaxy.datatypes.registry DEBUG 2024-02-23 13:08:02,134 [pN:main,p:73244,tN:MainThread] Retrieved datatype module galaxy.datatypes.tabular:MatrixMarket from the datatype registry for extension mtx. +galaxy.datatypes.registry DEBUG 2024-02-23 13:08:02,134 [pN:main,p:73244,tN:MainThread] Retrieved datatype module galaxy.datatypes.tabular:CMAP from the datatype registry for extension cmap. +galaxy.datatypes.registry DEBUG 2024-02-23 13:08:02,134 [pN:main,p:73244,tN:MainThread] Retrieved datatype module galaxy.datatypes.interval:ENCODEPeak from the datatype registry for extension encodepeak. +galaxy.datatypes.registry DEBUG 2024-02-23 13:08:02,134 [pN:main,p:73244,tN:MainThread] Retrieved datatype module galaxy.datatypes.images:Pdf from the datatype registry for extension pdf. +galaxy.datatypes.registry DEBUG 2024-02-23 13:08:02,134 [pN:main,p:73244,tN:MainThread] Retrieved datatype module galaxy.datatypes.tabular:Pileup from the datatype registry for extension pileup. +galaxy.datatypes.registry DEBUG 2024-02-23 13:08:02,134 [pN:main,p:73244,tN:MainThread] Retrieved datatype module galaxy.datatypes.tabular:Psl from the datatype registry for extension psl. +galaxy.datatypes.registry DEBUG 2024-02-23 13:08:02,134 [pN:main,p:73244,tN:MainThread] Retrieved datatype module galaxy.datatypes.text:Obo from the datatype registry for extension obo. +galaxy.datatypes.registry DEBUG 2024-02-23 13:08:02,134 [pN:main,p:73244,tN:MainThread] Retrieved datatype module galaxy.datatypes.xml:Owl from the datatype registry for extension owl. +galaxy.datatypes.registry DEBUG 2024-02-23 13:08:02,135 [pN:main,p:73244,tN:MainThread] Retrieved datatype module galaxy.datatypes.images:Png from the datatype registry for extension png. +galaxy.datatypes.registry DEBUG 2024-02-23 13:08:02,135 [pN:main,p:73244,tN:MainThread] Retrieved datatype module galaxy.datatypes.qualityscore:QualityScore from the datatype registry for extension qual. +galaxy.datatypes.registry DEBUG 2024-02-23 13:08:02,135 [pN:main,p:73244,tN:MainThread] Retrieved datatype module galaxy.datatypes.qualityscore:QualityScoreSolexa from the datatype registry for extension qualsolexa. +galaxy.datatypes.registry DEBUG 2024-02-23 13:08:02,135 [pN:main,p:73244,tN:MainThread] Retrieved datatype module galaxy.datatypes.qualityscore:QualityScoreIllumina from the datatype registry for extension qualillumina. +galaxy.datatypes.registry DEBUG 2024-02-23 13:08:02,135 [pN:main,p:73244,tN:MainThread] Retrieved datatype module galaxy.datatypes.qualityscore:QualityScoreSOLiD from the datatype registry for extension qualsolid. +galaxy.datatypes.registry DEBUG 2024-02-23 13:08:02,135 [pN:main,p:73244,tN:MainThread] Retrieved datatype module galaxy.datatypes.qualityscore:QualityScore454 from the datatype registry for extension qual454. +galaxy.datatypes.registry DEBUG 2024-02-23 13:08:02,135 [pN:main,p:73244,tN:MainThread] Retrieved datatype module galaxy.datatypes.assembly:Roadmaps from the datatype registry for extension roadmaps. +galaxy.datatypes.registry DEBUG 2024-02-23 13:08:02,135 [pN:main,p:73244,tN:MainThread] Retrieved datatype module galaxy.datatypes.tabular:Sam from the datatype registry for extension sam. +galaxy.datatypes.registry DEBUG 2024-02-23 13:08:02,135 [pN:main,p:73244,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:Scf from the datatype registry for extension scf. +galaxy.datatypes.registry DEBUG 2024-02-23 13:08:02,135 [pN:main,p:73244,tN:MainThread] Retrieved datatype module galaxy.datatypes.assembly:Sequences from the datatype registry for extension sequences. +galaxy.datatypes.registry DEBUG 2024-02-23 13:08:02,135 [pN:main,p:73244,tN:MainThread] Retrieved datatype module galaxy.datatypes.text:SnpEffDb from the datatype registry for extension snpeffdb. +galaxy.datatypes.registry DEBUG 2024-02-23 13:08:02,136 [pN:main,p:73244,tN:MainThread] Retrieved datatype module galaxy.datatypes.text:SnpSiftDbNSFP from the datatype registry for extension snpsiftdbnsfp. +galaxy.datatypes.registry DEBUG 2024-02-23 13:08:02,136 [pN:main,p:73244,tN:MainThread] Retrieved datatype module galaxy.datatypes.tabular:Tabular from the datatype registry for extension dbnsfp.tabular. +galaxy.datatypes.registry DEBUG 2024-02-23 13:08:02,136 [pN:main,p:73244,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:Sff from the datatype registry for extension sff. +galaxy.datatypes.registry DEBUG 2024-02-23 13:08:02,136 [pN:main,p:73244,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:Sra from the datatype registry for extension sra. +galaxy.datatypes.registry DEBUG 2024-02-23 13:08:02,136 [pN:main,p:73244,tN:MainThread] Retrieved datatype module galaxy.datatypes.tabular:SraManifest from the datatype registry for extension sra_manifest.tabular. +galaxy.datatypes.registry DEBUG 2024-02-23 13:08:02,136 [pN:main,p:73244,tN:MainThread] Retrieved datatype module galaxy.datatypes.xml:GenericXml from the datatype registry for extension svg. +galaxy.datatypes.registry DEBUG 2024-02-23 13:08:02,136 [pN:main,p:73244,tN:MainThread] Retrieved datatype module galaxy.datatypes.tabular:Taxonomy from the datatype registry for extension taxonomy. +galaxy.datatypes.registry DEBUG 2024-02-23 13:08:02,136 [pN:main,p:73244,tN:MainThread] Retrieved datatype module galaxy.datatypes.tabular:Tabular from the datatype registry for extension tabular. +galaxy.datatypes.registry DEBUG 2024-02-23 13:08:02,137 [pN:main,p:73244,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:TwoBit from the datatype registry for extension twobit. +galaxy.datatypes.registry DEBUG 2024-02-23 13:08:02,137 [pN:main,p:73244,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:SQmass from the datatype registry for extension sqmass. +galaxy.datatypes.registry DEBUG 2024-02-23 13:08:02,137 [pN:main,p:73244,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:GeminiSQLite from the datatype registry for extension gemini.sqlite. +galaxy.datatypes.registry DEBUG 2024-02-23 13:08:02,137 [pN:main,p:73244,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:ChiraSQLite from the datatype registry for extension chira.sqlite. +galaxy.datatypes.registry DEBUG 2024-02-23 13:08:02,137 [pN:main,p:73244,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:CuffDiffSQlite from the datatype registry for extension cuffdiff.sqlite. +galaxy.datatypes.registry DEBUG 2024-02-23 13:08:02,137 [pN:main,p:73244,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:GAFASQLite from the datatype registry for extension gafa.sqlite. +galaxy.datatypes.registry DEBUG 2024-02-23 13:08:02,137 [pN:main,p:73244,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:NcbiTaxonomySQlite from the datatype registry for extension ncbitaxonomy.sqlite. +galaxy.datatypes.registry DEBUG 2024-02-23 13:08:02,137 [pN:main,p:73244,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension txt. +galaxy.datatypes.registry DEBUG 2024-02-23 13:08:02,137 [pN:main,p:73244,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:LineCount from the datatype registry for extension linecount. +galaxy.datatypes.registry DEBUG 2024-02-23 13:08:02,137 [pN:main,p:73244,tN:MainThread] Retrieved datatype module galaxy.datatypes.sequence:MemePsp from the datatype registry for extension memepsp. +galaxy.datatypes.registry DEBUG 2024-02-23 13:08:02,138 [pN:main,p:73244,tN:MainThread] Retrieved datatype module galaxy.datatypes.xml:MEMEXml from the datatype registry for extension memexml. +galaxy.datatypes.registry DEBUG 2024-02-23 13:08:02,138 [pN:main,p:73244,tN:MainThread] Retrieved datatype module galaxy.datatypes.xml:CisML from the datatype registry for extension cisml. +galaxy.datatypes.registry DEBUG 2024-02-23 13:08:02,138 [pN:main,p:73244,tN:MainThread] Retrieved datatype module galaxy.datatypes.xml:GenericXml from the datatype registry for extension xml. +galaxy.datatypes.registry DEBUG 2024-02-23 13:08:02,138 [pN:main,p:73244,tN:MainThread] Retrieved datatype module galaxy.datatypes.xml:GenericXml from the datatype registry for extension xsd. +galaxy.datatypes.registry DEBUG 2024-02-23 13:08:02,138 [pN:main,p:73244,tN:MainThread] Retrieved datatype module galaxy.datatypes.xml:Dzi from the datatype registry for extension dzi. +galaxy.datatypes.registry DEBUG 2024-02-23 13:08:02,138 [pN:main,p:73244,tN:MainThread] Retrieved datatype module galaxy.datatypes.tabular:Vcf from the datatype registry for extension vcf. +galaxy.datatypes.registry DEBUG 2024-02-23 13:08:02,138 [pN:main,p:73244,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:Bcf from the datatype registry for extension bcf. +galaxy.datatypes.registry DEBUG 2024-02-23 13:08:02,138 [pN:main,p:73244,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:Bcf from the datatype registry for extension bcf_bgzip. +galaxy.datatypes.registry DEBUG 2024-02-23 13:08:02,139 [pN:main,p:73244,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:BcfUncompressed from the datatype registry for extension bcf_uncompressed. +galaxy.datatypes.registry DEBUG 2024-02-23 13:08:02,140 [pN:main,p:73244,tN:MainThread] Retrieved datatype module galaxy.datatypes.assembly:Velvet from the datatype registry for extension velvet. +galaxy.datatypes.registry DEBUG 2024-02-23 13:08:02,140 [pN:main,p:73244,tN:MainThread] Retrieved datatype module galaxy.datatypes.interval:Wiggle from the datatype registry for extension wig. +galaxy.datatypes.registry DEBUG 2024-02-23 13:08:02,140 [pN:main,p:73244,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:Binary from the datatype registry for extension interval_index. +galaxy.datatypes.registry DEBUG 2024-02-23 13:08:02,140 [pN:main,p:73244,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:Binary from the datatype registry for extension odgi. +galaxy.datatypes.registry DEBUG 2024-02-23 13:08:02,140 [pN:main,p:73244,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:CompressedArchive from the datatype registry for extension vg. +galaxy.datatypes.registry DEBUG 2024-02-23 13:08:02,140 [pN:main,p:73244,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:Binary from the datatype registry for extension xg. +galaxy.datatypes.registry DEBUG 2024-02-23 13:08:02,140 [pN:main,p:73244,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:Binary from the datatype registry for extension protobuf2. +galaxy.datatypes.registry DEBUG 2024-02-23 13:08:02,140 [pN:main,p:73244,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:Binary from the datatype registry for extension protobuf3. +galaxy.datatypes.registry DEBUG 2024-02-23 13:08:02,141 [pN:main,p:73244,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:Binary from the datatype registry for extension onnx. +galaxy.datatypes.registry DEBUG 2024-02-23 13:08:02,141 [pN:main,p:73244,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:Binary from the datatype registry for extension tabix. +galaxy.datatypes.registry DEBUG 2024-02-23 13:08:02,141 [pN:main,p:73244,tN:MainThread] Retrieved datatype module galaxy.datatypes.interval:IntervalTabix from the datatype registry for extension interval_tabix.gz. +galaxy.datatypes.registry DEBUG 2024-02-23 13:08:02,141 [pN:main,p:73244,tN:MainThread] Retrieved datatype module galaxy.datatypes.interval:JuicerMediumTabix from the datatype registry for extension juicer_medium_tabix.gz. +galaxy.datatypes.registry DEBUG 2024-02-23 13:08:02,141 [pN:main,p:73244,tN:MainThread] Retrieved datatype module galaxy.datatypes.interval:BedTabix from the datatype registry for extension bed_tabix.gz. +galaxy.datatypes.registry DEBUG 2024-02-23 13:08:02,141 [pN:main,p:73244,tN:MainThread] Retrieved datatype module galaxy.datatypes.interval:GffTabix from the datatype registry for extension gff_tabix.gz. +galaxy.datatypes.registry DEBUG 2024-02-23 13:08:02,141 [pN:main,p:73244,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:Binary from the datatype registry for extension bgzip. +galaxy.datatypes.registry DEBUG 2024-02-23 13:08:02,141 [pN:main,p:73244,tN:MainThread] Retrieved datatype module galaxy.datatypes.tabular:VcfGz from the datatype registry for extension vcf_bgzip. +galaxy.datatypes.registry DEBUG 2024-02-23 13:08:02,142 [pN:main,p:73244,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:Binary from the datatype registry for extension bus. +galaxy.datatypes.registry DEBUG 2024-02-23 13:08:02,142 [pN:main,p:73244,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:Binary from the datatype registry for extension kallisto.idx. +galaxy.datatypes.registry DEBUG 2024-02-23 13:08:02,142 [pN:main,p:73244,tN:MainThread] Retrieved datatype module galaxy.datatypes.xml:Phyloxml from the datatype registry for extension phyloxml. +galaxy.datatypes.registry DEBUG 2024-02-23 13:08:02,142 [pN:main,p:73244,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:Newick from the datatype registry for extension newick. +galaxy.datatypes.registry DEBUG 2024-02-23 13:08:02,142 [pN:main,p:73244,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:Newick from the datatype registry for extension nhx. +galaxy.datatypes.registry DEBUG 2024-02-23 13:08:02,142 [pN:main,p:73244,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:Nexus from the datatype registry for extension nex. +galaxy.datatypes.registry DEBUG 2024-02-23 13:08:02,142 [pN:main,p:73244,tN:MainThread] Retrieved datatype module galaxy.datatypes.text:IQTree from the datatype registry for extension iqtree. +galaxy.datatypes.registry DEBUG 2024-02-23 13:08:02,144 [pN:main,p:73244,tN:MainThread] Retrieved datatype module galaxy.datatypes.mothur:SquareDistanceMatrix from the datatype registry for extension mldist. +galaxy.datatypes.registry DEBUG 2024-02-23 13:08:02,146 [pN:main,p:73244,tN:MainThread] Retrieved datatype module galaxy.datatypes.genetics:Affybatch from the datatype registry for extension affybatch. +galaxy.datatypes.registry DEBUG 2024-02-23 13:08:02,147 [pN:main,p:73244,tN:MainThread] Retrieved datatype module galaxy.datatypes.genetics:Eigenstratgeno from the datatype registry for extension eigenstratgeno. +galaxy.datatypes.registry DEBUG 2024-02-23 13:08:02,147 [pN:main,p:73244,tN:MainThread] Retrieved datatype module galaxy.datatypes.genetics:Eigenstratpca from the datatype registry for extension eigenstratpca. +galaxy.datatypes.registry DEBUG 2024-02-23 13:08:02,147 [pN:main,p:73244,tN:MainThread] Retrieved datatype module galaxy.datatypes.genetics:Eset from the datatype registry for extension eset. +galaxy.datatypes.registry DEBUG 2024-02-23 13:08:02,147 [pN:main,p:73244,tN:MainThread] Retrieved datatype module galaxy.datatypes.genetics:Fped from the datatype registry for extension fped. +galaxy.datatypes.registry DEBUG 2024-02-23 13:08:02,147 [pN:main,p:73244,tN:MainThread] Retrieved datatype module galaxy.datatypes.genetics:Fphe from the datatype registry for extension fphe. +galaxy.datatypes.registry DEBUG 2024-02-23 13:08:02,147 [pN:main,p:73244,tN:MainThread] Retrieved datatype module galaxy.datatypes.genetics:GenomeGraphs from the datatype registry for extension gg. +galaxy.datatypes.registry DEBUG 2024-02-23 13:08:02,147 [pN:main,p:73244,tN:MainThread] Retrieved datatype module galaxy.datatypes.genetics:ldIndep from the datatype registry for extension ldindep. +galaxy.datatypes.registry DEBUG 2024-02-23 13:08:02,147 [pN:main,p:73244,tN:MainThread] Retrieved datatype module galaxy.datatypes.genetics:MAlist from the datatype registry for extension malist. +galaxy.datatypes.registry DEBUG 2024-02-23 13:08:02,148 [pN:main,p:73244,tN:MainThread] Retrieved datatype module galaxy.datatypes.genetics:Lped from the datatype registry for extension lped. +galaxy.datatypes.registry DEBUG 2024-02-23 13:08:02,148 [pN:main,p:73244,tN:MainThread] Retrieved datatype module galaxy.datatypes.genetics:Pbed from the datatype registry for extension pbed. +galaxy.datatypes.registry DEBUG 2024-02-23 13:08:02,148 [pN:main,p:73244,tN:MainThread] Retrieved datatype module galaxy.datatypes.genetics:Pheno from the datatype registry for extension pheno. +galaxy.datatypes.registry DEBUG 2024-02-23 13:08:02,148 [pN:main,p:73244,tN:MainThread] Retrieved datatype module galaxy.datatypes.genetics:Pphe from the datatype registry for extension pphe. +galaxy.datatypes.registry DEBUG 2024-02-23 13:08:02,148 [pN:main,p:73244,tN:MainThread] Retrieved datatype module galaxy.datatypes.genetics:RexpBase from the datatype registry for extension rexpbase. +galaxy.datatypes.registry DEBUG 2024-02-23 13:08:02,148 [pN:main,p:73244,tN:MainThread] Retrieved datatype module galaxy.datatypes.genetics:Rgenetics from the datatype registry for extension rgenetics. +galaxy.datatypes.registry DEBUG 2024-02-23 13:08:02,148 [pN:main,p:73244,tN:MainThread] Retrieved datatype module galaxy.datatypes.genetics:Snptest from the datatype registry for extension snptest. +galaxy.datatypes.registry DEBUG 2024-02-23 13:08:02,148 [pN:main,p:73244,tN:MainThread] Retrieved datatype module galaxy.datatypes.genetics:SNPMatrix from the datatype registry for extension snpmatrix. +galaxy.datatypes.registry DEBUG 2024-02-23 13:08:02,148 [pN:main,p:73244,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:ExcelXls from the datatype registry for extension xls. +galaxy.datatypes.registry DEBUG 2024-02-23 13:08:02,148 [pN:main,p:73244,tN:MainThread] Retrieved datatype module galaxy.datatypes.text:Ipynb from the datatype registry for extension ipynb. +galaxy.datatypes.registry DEBUG 2024-02-23 13:08:02,148 [pN:main,p:73244,tN:MainThread] Retrieved datatype module galaxy.datatypes.text:Json from the datatype registry for extension json. +galaxy.datatypes.registry DEBUG 2024-02-23 13:08:02,149 [pN:main,p:73244,tN:MainThread] Retrieved datatype module galaxy.datatypes.text:ExpressionJson from the datatype registry for extension expression.json. +galaxy.datatypes.registry DEBUG 2024-02-23 13:08:02,149 [pN:main,p:73244,tN:MainThread] Retrieved datatype module galaxy.datatypes.graph:Xgmml from the datatype registry for extension xgmml. +galaxy.datatypes.registry DEBUG 2024-02-23 13:08:02,150 [pN:main,p:73244,tN:MainThread] Retrieved datatype module galaxy.datatypes.graph:Sif from the datatype registry for extension sif. +galaxy.datatypes.registry DEBUG 2024-02-23 13:08:02,151 [pN:main,p:73244,tN:MainThread] Retrieved datatype module galaxy.datatypes.triples:Triples from the datatype registry for extension triples. +galaxy.datatypes.registry DEBUG 2024-02-23 13:08:02,151 [pN:main,p:73244,tN:MainThread] Retrieved datatype module galaxy.datatypes.triples:HDT from the datatype registry for extension hdt. +galaxy.datatypes.registry DEBUG 2024-02-23 13:08:02,151 [pN:main,p:73244,tN:MainThread] Retrieved datatype module galaxy.datatypes.triples:NTriples from the datatype registry for extension nt. +galaxy.datatypes.registry DEBUG 2024-02-23 13:08:02,151 [pN:main,p:73244,tN:MainThread] Retrieved datatype module galaxy.datatypes.triples:N3 from the datatype registry for extension n3. +galaxy.datatypes.registry DEBUG 2024-02-23 13:08:02,151 [pN:main,p:73244,tN:MainThread] Retrieved datatype module galaxy.datatypes.triples:Turtle from the datatype registry for extension ttl. +galaxy.datatypes.registry DEBUG 2024-02-23 13:08:02,151 [pN:main,p:73244,tN:MainThread] Retrieved datatype module galaxy.datatypes.triples:Rdf from the datatype registry for extension rdf. +galaxy.datatypes.registry DEBUG 2024-02-23 13:08:02,151 [pN:main,p:73244,tN:MainThread] Retrieved datatype module galaxy.datatypes.triples:Jsonld from the datatype registry for extension jsonld. +galaxy.datatypes.registry DEBUG 2024-02-23 13:08:02,151 [pN:main,p:73244,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:ExcelXls from the datatype registry for extension excel.xls. +galaxy.datatypes.registry DEBUG 2024-02-23 13:08:02,151 [pN:main,p:73244,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:Xlsx from the datatype registry for extension xlsx. +galaxy.datatypes.registry DEBUG 2024-02-23 13:08:02,151 [pN:main,p:73244,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:Binary from the datatype registry for extension docx. +galaxy.datatypes.registry DEBUG 2024-02-23 13:08:02,152 [pN:main,p:73244,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension btwisted. +galaxy.datatypes.registry DEBUG 2024-02-23 13:08:02,152 [pN:main,p:73244,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension cai. +galaxy.datatypes.registry DEBUG 2024-02-23 13:08:02,152 [pN:main,p:73244,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension cat_db. +galaxy.datatypes.registry DEBUG 2024-02-23 13:08:02,152 [pN:main,p:73244,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension charge. +galaxy.datatypes.registry DEBUG 2024-02-23 13:08:02,152 [pN:main,p:73244,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension checktrans. +galaxy.datatypes.registry DEBUG 2024-02-23 13:08:02,152 [pN:main,p:73244,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension chips. +galaxy.datatypes.registry DEBUG 2024-02-23 13:08:02,152 [pN:main,p:73244,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension codcmp. +galaxy.datatypes.registry DEBUG 2024-02-23 13:08:02,153 [pN:main,p:73244,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension coderet. +galaxy.datatypes.registry DEBUG 2024-02-23 13:08:02,153 [pN:main,p:73244,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension compseq. +galaxy.datatypes.registry DEBUG 2024-02-23 13:08:02,153 [pN:main,p:73244,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension cpgplot. +galaxy.datatypes.registry DEBUG 2024-02-23 13:08:02,153 [pN:main,p:73244,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension cpgreport. +galaxy.datatypes.registry DEBUG 2024-02-23 13:08:02,153 [pN:main,p:73244,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension cusp. +galaxy.datatypes.registry DEBUG 2024-02-23 13:08:02,153 [pN:main,p:73244,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension cut. +galaxy.datatypes.registry DEBUG 2024-02-23 13:08:02,153 [pN:main,p:73244,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension dan. +galaxy.datatypes.registry DEBUG 2024-02-23 13:08:02,153 [pN:main,p:73244,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension digest. +galaxy.datatypes.registry DEBUG 2024-02-23 13:08:02,153 [pN:main,p:73244,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension dreg. +galaxy.datatypes.registry DEBUG 2024-02-23 13:08:02,154 [pN:main,p:73244,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension einverted. +galaxy.datatypes.registry DEBUG 2024-02-23 13:08:02,154 [pN:main,p:73244,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension epestfind. +galaxy.datatypes.registry DEBUG 2024-02-23 13:08:02,154 [pN:main,p:73244,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension equicktandem. +galaxy.datatypes.registry DEBUG 2024-02-23 13:08:02,154 [pN:main,p:73244,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension est2genome. +galaxy.datatypes.registry DEBUG 2024-02-23 13:08:02,154 [pN:main,p:73244,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension etandem. +galaxy.datatypes.registry DEBUG 2024-02-23 13:08:02,154 [pN:main,p:73244,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension freak. +galaxy.datatypes.registry DEBUG 2024-02-23 13:08:02,154 [pN:main,p:73244,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension fuzznuc. +galaxy.datatypes.registry DEBUG 2024-02-23 13:08:02,154 [pN:main,p:73244,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension fuzzpro. +galaxy.datatypes.registry DEBUG 2024-02-23 13:08:02,154 [pN:main,p:73244,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension fuzztran. +galaxy.datatypes.registry DEBUG 2024-02-23 13:08:02,155 [pN:main,p:73244,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension garnier. +galaxy.datatypes.registry DEBUG 2024-02-23 13:08:02,155 [pN:main,p:73244,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension geecee. +galaxy.datatypes.registry DEBUG 2024-02-23 13:08:02,155 [pN:main,p:73244,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension helixturnhelix. +galaxy.datatypes.registry DEBUG 2024-02-23 13:08:02,155 [pN:main,p:73244,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension hmoment. +galaxy.datatypes.registry DEBUG 2024-02-23 13:08:02,155 [pN:main,p:73244,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension isochore. +galaxy.datatypes.registry DEBUG 2024-02-23 13:08:02,155 [pN:main,p:73244,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension match. +galaxy.datatypes.registry DEBUG 2024-02-23 13:08:02,155 [pN:main,p:73244,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension nametable. +galaxy.datatypes.registry DEBUG 2024-02-23 13:08:02,155 [pN:main,p:73244,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension needle. +galaxy.datatypes.registry DEBUG 2024-02-23 13:08:02,155 [pN:main,p:73244,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension newcpgreport. +galaxy.datatypes.registry DEBUG 2024-02-23 13:08:02,155 [pN:main,p:73244,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension newcpgseek. +galaxy.datatypes.registry DEBUG 2024-02-23 13:08:02,156 [pN:main,p:73244,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension noreturn. +galaxy.datatypes.registry DEBUG 2024-02-23 13:08:02,156 [pN:main,p:73244,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension palindrome. +galaxy.datatypes.registry DEBUG 2024-02-23 13:08:02,156 [pN:main,p:73244,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension pepcoil. +galaxy.datatypes.registry DEBUG 2024-02-23 13:08:02,156 [pN:main,p:73244,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension pepinfo. +galaxy.datatypes.registry DEBUG 2024-02-23 13:08:02,156 [pN:main,p:73244,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension pepstats. +galaxy.datatypes.registry DEBUG 2024-02-23 13:08:02,156 [pN:main,p:73244,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension polydot. +galaxy.datatypes.registry DEBUG 2024-02-23 13:08:02,156 [pN:main,p:73244,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension preg. +galaxy.datatypes.registry DEBUG 2024-02-23 13:08:02,156 [pN:main,p:73244,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension prettyseq. +galaxy.datatypes.registry DEBUG 2024-02-23 13:08:02,156 [pN:main,p:73244,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension primersearch. +galaxy.datatypes.registry DEBUG 2024-02-23 13:08:02,157 [pN:main,p:73244,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension showfeat. +galaxy.datatypes.registry DEBUG 2024-02-23 13:08:02,157 [pN:main,p:73244,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension showorf. +galaxy.datatypes.registry DEBUG 2024-02-23 13:08:02,157 [pN:main,p:73244,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension sixpack. +galaxy.datatypes.registry DEBUG 2024-02-23 13:08:02,157 [pN:main,p:73244,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension strider. +galaxy.datatypes.registry DEBUG 2024-02-23 13:08:02,157 [pN:main,p:73244,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension supermatcher. +galaxy.datatypes.registry DEBUG 2024-02-23 13:08:02,157 [pN:main,p:73244,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension syco. +galaxy.datatypes.registry DEBUG 2024-02-23 13:08:02,157 [pN:main,p:73244,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension textsearch. +galaxy.datatypes.registry DEBUG 2024-02-23 13:08:02,157 [pN:main,p:73244,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension vectorstrip. +galaxy.datatypes.registry DEBUG 2024-02-23 13:08:02,158 [pN:main,p:73244,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension wobble. +galaxy.datatypes.registry DEBUG 2024-02-23 13:08:02,158 [pN:main,p:73244,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension wordcount. +galaxy.datatypes.registry DEBUG 2024-02-23 13:08:02,158 [pN:main,p:73244,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension dbmotif. +galaxy.datatypes.registry DEBUG 2024-02-23 13:08:02,158 [pN:main,p:73244,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension diffseq. +galaxy.datatypes.registry DEBUG 2024-02-23 13:08:02,158 [pN:main,p:73244,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension excel. +galaxy.datatypes.registry DEBUG 2024-02-23 13:08:02,158 [pN:main,p:73244,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension feattable. +galaxy.datatypes.registry DEBUG 2024-02-23 13:08:02,158 [pN:main,p:73244,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension motif. +galaxy.datatypes.registry DEBUG 2024-02-23 13:08:02,158 [pN:main,p:73244,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension regions. +galaxy.datatypes.registry DEBUG 2024-02-23 13:08:02,158 [pN:main,p:73244,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension seqtable. +galaxy.datatypes.registry DEBUG 2024-02-23 13:08:02,158 [pN:main,p:73244,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension simple. +galaxy.datatypes.registry DEBUG 2024-02-23 13:08:02,159 [pN:main,p:73244,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension table. +galaxy.datatypes.registry DEBUG 2024-02-23 13:08:02,159 [pN:main,p:73244,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension tagseq. +galaxy.datatypes.registry DEBUG 2024-02-23 13:08:02,159 [pN:main,p:73244,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension acedb. +galaxy.datatypes.registry DEBUG 2024-02-23 13:08:02,159 [pN:main,p:73244,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension clustal. +galaxy.datatypes.registry DEBUG 2024-02-23 13:08:02,159 [pN:main,p:73244,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension codata. +galaxy.datatypes.registry DEBUG 2024-02-23 13:08:02,159 [pN:main,p:73244,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension embl. +galaxy.datatypes.registry DEBUG 2024-02-23 13:08:02,159 [pN:main,p:73244,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension fitch. +galaxy.datatypes.registry DEBUG 2024-02-23 13:08:02,159 [pN:main,p:73244,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension gcg. +galaxy.datatypes.registry DEBUG 2024-02-23 13:08:02,159 [pN:main,p:73244,tN:MainThread] Retrieved datatype module galaxy.datatypes.sequence:Genbank from the datatype registry for extension genbank. +galaxy.datatypes.registry DEBUG 2024-02-23 13:08:02,160 [pN:main,p:73244,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension hennig86. +galaxy.datatypes.registry DEBUG 2024-02-23 13:08:02,160 [pN:main,p:73244,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension ig. +galaxy.datatypes.registry DEBUG 2024-02-23 13:08:02,160 [pN:main,p:73244,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension jackknifer. +galaxy.datatypes.registry DEBUG 2024-02-23 13:08:02,160 [pN:main,p:73244,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension jackknifernon. +galaxy.datatypes.registry DEBUG 2024-02-23 13:08:02,160 [pN:main,p:73244,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension mega. +galaxy.datatypes.registry DEBUG 2024-02-23 13:08:02,160 [pN:main,p:73244,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension meganon. +galaxy.datatypes.registry DEBUG 2024-02-23 13:08:02,160 [pN:main,p:73244,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension ncbi. +galaxy.datatypes.registry DEBUG 2024-02-23 13:08:02,160 [pN:main,p:73244,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension nexus. +galaxy.datatypes.registry DEBUG 2024-02-23 13:08:02,161 [pN:main,p:73244,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension nexusnon. +galaxy.datatypes.registry DEBUG 2024-02-23 13:08:02,161 [pN:main,p:73244,tN:MainThread] Retrieved datatype module galaxy.datatypes.phylip:Phylip from the datatype registry for extension phylip. +galaxy.datatypes.registry DEBUG 2024-02-23 13:08:02,161 [pN:main,p:73244,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension phylipnon. +galaxy.datatypes.registry DEBUG 2024-02-23 13:08:02,161 [pN:main,p:73244,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension pir. +galaxy.datatypes.registry DEBUG 2024-02-23 13:08:02,161 [pN:main,p:73244,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension staden. +galaxy.datatypes.registry DEBUG 2024-02-23 13:08:02,161 [pN:main,p:73244,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension swiss. +galaxy.datatypes.registry DEBUG 2024-02-23 13:08:02,163 [pN:main,p:73244,tN:MainThread] Retrieved datatype module galaxy.datatypes.msa:Msf from the datatype registry for extension msf. +galaxy.datatypes.registry DEBUG 2024-02-23 13:08:02,163 [pN:main,p:73244,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension markx0. +galaxy.datatypes.registry DEBUG 2024-02-23 13:08:02,163 [pN:main,p:73244,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension markx1. +galaxy.datatypes.registry DEBUG 2024-02-23 13:08:02,163 [pN:main,p:73244,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension markx10. +galaxy.datatypes.registry DEBUG 2024-02-23 13:08:02,163 [pN:main,p:73244,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension markx2. +galaxy.datatypes.registry DEBUG 2024-02-23 13:08:02,163 [pN:main,p:73244,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension markx3. +galaxy.datatypes.registry DEBUG 2024-02-23 13:08:02,163 [pN:main,p:73244,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension pair. +galaxy.datatypes.registry DEBUG 2024-02-23 13:08:02,163 [pN:main,p:73244,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension score. +galaxy.datatypes.registry DEBUG 2024-02-23 13:08:02,164 [pN:main,p:73244,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension srs. +galaxy.datatypes.registry DEBUG 2024-02-23 13:08:02,164 [pN:main,p:73244,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension srspair. +galaxy.datatypes.registry DEBUG 2024-02-23 13:08:02,164 [pN:main,p:73244,tN:MainThread] Retrieved datatype module galaxy.datatypes.annotation:SnapHmm from the datatype registry for extension snaphmm. +galaxy.datatypes.registry DEBUG 2024-02-23 13:08:02,164 [pN:main,p:73244,tN:MainThread] Retrieved datatype module galaxy.datatypes.annotation:Augustus from the datatype registry for extension augustus. +galaxy.datatypes.registry DEBUG 2024-02-23 13:08:02,164 [pN:main,p:73244,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:ICM from the datatype registry for extension icm. +galaxy.datatypes.registry DEBUG 2024-02-23 13:08:02,164 [pN:main,p:73244,tN:MainThread] Retrieved datatype module galaxy.datatypes.msa:InfernalCM from the datatype registry for extension cm. +galaxy.datatypes.registry DEBUG 2024-02-23 13:08:02,164 [pN:main,p:73244,tN:MainThread] Retrieved datatype module galaxy.datatypes.msa:Hmmer2 from the datatype registry for extension hmm2. +galaxy.datatypes.registry DEBUG 2024-02-23 13:08:02,165 [pN:main,p:73244,tN:MainThread] Retrieved datatype module galaxy.datatypes.msa:Hmmer3 from the datatype registry for extension hmm3. +galaxy.datatypes.registry DEBUG 2024-02-23 13:08:02,165 [pN:main,p:73244,tN:MainThread] Retrieved datatype module galaxy.datatypes.msa:Stockholm_1_0 from the datatype registry for extension stockholm. +galaxy.datatypes.registry DEBUG 2024-02-23 13:08:02,165 [pN:main,p:73244,tN:MainThread] Retrieved datatype module galaxy.datatypes.msa:MauveXmfa from the datatype registry for extension xmfa. +galaxy.datatypes.registry DEBUG 2024-02-23 13:08:02,165 [pN:main,p:73244,tN:MainThread] Retrieved datatype module galaxy.datatypes.microarrays:Cel from the datatype registry for extension cel. +galaxy.datatypes.registry DEBUG 2024-02-23 13:08:02,165 [pN:main,p:73244,tN:MainThread] Retrieved datatype module galaxy.datatypes.microarrays:Gpr from the datatype registry for extension gpr. +galaxy.datatypes.registry DEBUG 2024-02-23 13:08:02,166 [pN:main,p:73244,tN:MainThread] Retrieved datatype module galaxy.datatypes.microarrays:Gal from the datatype registry for extension gal. +galaxy.datatypes.registry DEBUG 2024-02-23 13:08:02,166 [pN:main,p:73244,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:RDS from the datatype registry for extension rds. +galaxy.datatypes.registry DEBUG 2024-02-23 13:08:02,166 [pN:main,p:73244,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:RDS from the datatype registry for extension phyloseq. +galaxy.datatypes.registry DEBUG 2024-02-23 13:08:02,166 [pN:main,p:73244,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:RData from the datatype registry for extension rdata. +galaxy.datatypes.registry DEBUG 2024-02-23 13:08:02,166 [pN:main,p:73244,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:RData from the datatype registry for extension rdata.sce. +galaxy.datatypes.registry DEBUG 2024-02-23 13:08:02,166 [pN:main,p:73244,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:RData from the datatype registry for extension rdata.xcms.raw. +galaxy.datatypes.registry DEBUG 2024-02-23 13:08:02,166 [pN:main,p:73244,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:RData from the datatype registry for extension rdata.msnbase.raw. +galaxy.datatypes.registry DEBUG 2024-02-23 13:08:02,166 [pN:main,p:73244,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:RData from the datatype registry for extension rdata.xcms.findchrompeaks. +galaxy.datatypes.registry DEBUG 2024-02-23 13:08:02,167 [pN:main,p:73244,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:RData from the datatype registry for extension rdata.xcms.group. +galaxy.datatypes.registry DEBUG 2024-02-23 13:08:02,167 [pN:main,p:73244,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:RData from the datatype registry for extension rdata.xcms.retcor. +galaxy.datatypes.registry DEBUG 2024-02-23 13:08:02,167 [pN:main,p:73244,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:RData from the datatype registry for extension rdata.xcms.fillpeaks. +galaxy.datatypes.registry DEBUG 2024-02-23 13:08:02,167 [pN:main,p:73244,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:RData from the datatype registry for extension rdata.camera.positive. +galaxy.datatypes.registry DEBUG 2024-02-23 13:08:02,167 [pN:main,p:73244,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:RData from the datatype registry for extension rdata.camera.negative. +galaxy.datatypes.registry DEBUG 2024-02-23 13:08:02,167 [pN:main,p:73244,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:RData from the datatype registry for extension rdata.camera.quick. +galaxy.datatypes.registry DEBUG 2024-02-23 13:08:02,168 [pN:main,p:73244,tN:MainThread] Retrieved datatype module galaxy.datatypes.hdf5:HDF5SummarizedExperiment from the datatype registry for extension rdata.se. +galaxy.datatypes.registry DEBUG 2024-02-23 13:08:02,168 [pN:main,p:73244,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:Binary from the datatype registry for extension rdock_as. +galaxy.datatypes.registry DEBUG 2024-02-23 13:08:02,168 [pN:main,p:73244,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:OxliCountGraph from the datatype registry for extension oxlicg. +galaxy.datatypes.registry DEBUG 2024-02-23 13:08:02,168 [pN:main,p:73244,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:OxliNodeGraph from the datatype registry for extension oxling. +galaxy.datatypes.registry DEBUG 2024-02-23 13:08:02,168 [pN:main,p:73244,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:OxliTagSet from the datatype registry for extension oxlits. +galaxy.datatypes.registry DEBUG 2024-02-23 13:08:02,168 [pN:main,p:73244,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:OxliStopTags from the datatype registry for extension oxlist. +galaxy.datatypes.registry DEBUG 2024-02-23 13:08:02,168 [pN:main,p:73244,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:OxliSubset from the datatype registry for extension oxliss. +galaxy.datatypes.registry DEBUG 2024-02-23 13:08:02,168 [pN:main,p:73244,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:OxliGraphLabels from the datatype registry for extension oxligl. +galaxy.datatypes.registry DEBUG 2024-02-23 13:08:02,170 [pN:main,p:73244,tN:MainThread] Retrieved datatype module galaxy.datatypes.constructive_solid_geometry:STL from the datatype registry for extension stl. +galaxy.datatypes.registry DEBUG 2024-02-23 13:08:02,170 [pN:main,p:73244,tN:MainThread] Retrieved datatype module galaxy.datatypes.constructive_solid_geometry:PlyAscii from the datatype registry for extension plyascii. +galaxy.datatypes.registry DEBUG 2024-02-23 13:08:02,170 [pN:main,p:73244,tN:MainThread] Retrieved datatype module galaxy.datatypes.constructive_solid_geometry:PlyBinary from the datatype registry for extension plybinary. +galaxy.datatypes.registry DEBUG 2024-02-23 13:08:02,170 [pN:main,p:73244,tN:MainThread] Retrieved datatype module galaxy.datatypes.constructive_solid_geometry:VtkAscii from the datatype registry for extension vtkascii. +galaxy.datatypes.registry DEBUG 2024-02-23 13:08:02,170 [pN:main,p:73244,tN:MainThread] Retrieved datatype module galaxy.datatypes.constructive_solid_geometry:VtkBinary from the datatype registry for extension vtkbinary. +galaxy.datatypes.registry DEBUG 2024-02-23 13:08:02,170 [pN:main,p:73244,tN:MainThread] Retrieved datatype module galaxy.datatypes.text:Biom1 from the datatype registry for extension biom1. +galaxy.datatypes.registry DEBUG 2024-02-23 13:08:02,170 [pN:main,p:73244,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:Biom2 from the datatype registry for extension biom2. +galaxy.datatypes.registry DEBUG 2024-02-23 13:08:02,170 [pN:main,p:73244,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:MashSketch from the datatype registry for extension msh. +galaxy.datatypes.registry DEBUG 2024-02-23 13:08:02,171 [pN:main,p:73244,tN:MainThread] Retrieved datatype module galaxy.datatypes.interval:ScIdx from the datatype registry for extension scidx. +galaxy.datatypes.registry DEBUG 2024-02-23 13:08:02,172 [pN:main,p:73244,tN:MainThread] Retrieved datatype module galaxy.datatypes.molecules:SMILES from the datatype registry for extension smi. +galaxy.datatypes.registry DEBUG 2024-02-23 13:08:02,173 [pN:main,p:73244,tN:MainThread] Retrieved datatype module galaxy.datatypes.molecules:SDF from the datatype registry for extension sdf. +galaxy.datatypes.registry DEBUG 2024-02-23 13:08:02,173 [pN:main,p:73244,tN:MainThread] Retrieved datatype module galaxy.datatypes.molecules:InChI from the datatype registry for extension inchi. +galaxy.datatypes.registry DEBUG 2024-02-23 13:08:02,173 [pN:main,p:73244,tN:MainThread] Retrieved datatype module galaxy.datatypes.molecules:MOL from the datatype registry for extension mol. +galaxy.datatypes.registry DEBUG 2024-02-23 13:08:02,173 [pN:main,p:73244,tN:MainThread] Retrieved datatype module galaxy.datatypes.molecules:MOL2 from the datatype registry for extension mol2. +galaxy.datatypes.registry DEBUG 2024-02-23 13:08:02,173 [pN:main,p:73244,tN:MainThread] Retrieved datatype module galaxy.datatypes.molecules:CML from the datatype registry for extension cml. +galaxy.datatypes.registry DEBUG 2024-02-23 13:08:02,173 [pN:main,p:73244,tN:MainThread] Retrieved datatype module galaxy.datatypes.molecules:FPS from the datatype registry for extension fps. +galaxy.datatypes.registry DEBUG 2024-02-23 13:08:02,173 [pN:main,p:73244,tN:MainThread] Retrieved datatype module galaxy.datatypes.molecules:OBFS from the datatype registry for extension obfs. +galaxy.datatypes.registry DEBUG 2024-02-23 13:08:02,173 [pN:main,p:73244,tN:MainThread] Retrieved datatype module galaxy.datatypes.molecules:DRF from the datatype registry for extension drf. +galaxy.datatypes.registry DEBUG 2024-02-23 13:08:02,174 [pN:main,p:73244,tN:MainThread] Retrieved datatype module galaxy.datatypes.molecules:PHAR from the datatype registry for extension phar. +galaxy.datatypes.registry DEBUG 2024-02-23 13:08:02,174 [pN:main,p:73244,tN:MainThread] Retrieved datatype module galaxy.datatypes.molecules:PDB from the datatype registry for extension pdb. +galaxy.datatypes.registry DEBUG 2024-02-23 13:08:02,174 [pN:main,p:73244,tN:MainThread] Retrieved datatype module galaxy.datatypes.molecules:PDBQT from the datatype registry for extension pdbqt. +galaxy.datatypes.registry DEBUG 2024-02-23 13:08:02,174 [pN:main,p:73244,tN:MainThread] Retrieved datatype module galaxy.datatypes.molecules:PQR from the datatype registry for extension pqr. +galaxy.datatypes.registry DEBUG 2024-02-23 13:08:02,174 [pN:main,p:73244,tN:MainThread] Retrieved datatype module galaxy.datatypes.molecules:Cell from the datatype registry for extension cell. +galaxy.datatypes.registry DEBUG 2024-02-23 13:08:02,174 [pN:main,p:73244,tN:MainThread] Retrieved datatype module galaxy.datatypes.molecules:CIF from the datatype registry for extension cif. +galaxy.datatypes.registry DEBUG 2024-02-23 13:08:02,174 [pN:main,p:73244,tN:MainThread] Retrieved datatype module galaxy.datatypes.molecules:XYZ from the datatype registry for extension xyz. +galaxy.datatypes.registry DEBUG 2024-02-23 13:08:02,174 [pN:main,p:73244,tN:MainThread] Retrieved datatype module galaxy.datatypes.molecules:ExtendedXYZ from the datatype registry for extension extxyz. +galaxy.datatypes.registry DEBUG 2024-02-23 13:08:02,174 [pN:main,p:73244,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:Trr from the datatype registry for extension trr. +galaxy.datatypes.registry DEBUG 2024-02-23 13:08:02,174 [pN:main,p:73244,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:Dcd from the datatype registry for extension dcd. +galaxy.datatypes.registry DEBUG 2024-02-23 13:08:02,175 [pN:main,p:73244,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension top. +galaxy.datatypes.registry DEBUG 2024-02-23 13:08:02,175 [pN:main,p:73244,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension prmtop. +galaxy.datatypes.registry DEBUG 2024-02-23 13:08:02,175 [pN:main,p:73244,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension itp. +galaxy.datatypes.registry DEBUG 2024-02-23 13:08:02,175 [pN:main,p:73244,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension mdp. +galaxy.datatypes.registry DEBUG 2024-02-23 13:08:02,175 [pN:main,p:73244,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension ndx. +galaxy.datatypes.registry DEBUG 2024-02-23 13:08:02,175 [pN:main,p:73244,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension xvg. +galaxy.datatypes.registry DEBUG 2024-02-23 13:08:02,175 [pN:main,p:73244,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:Xtc from the datatype registry for extension xtc. +galaxy.datatypes.registry DEBUG 2024-02-23 13:08:02,175 [pN:main,p:73244,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:Cpt from the datatype registry for extension cpt. +galaxy.datatypes.registry DEBUG 2024-02-23 13:08:02,176 [pN:main,p:73244,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:Edr from the datatype registry for extension edr. +galaxy.datatypes.registry DEBUG 2024-02-23 13:08:02,176 [pN:main,p:73244,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:Binary from the datatype registry for extension tpr. +galaxy.datatypes.registry DEBUG 2024-02-23 13:08:02,176 [pN:main,p:73244,tN:MainThread] Retrieved datatype module galaxy.datatypes.molecules:GRO from the datatype registry for extension gro. +galaxy.datatypes.registry DEBUG 2024-02-23 13:08:02,176 [pN:main,p:73244,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension inpcrd. +galaxy.datatypes.registry DEBUG 2024-02-23 13:08:02,176 [pN:main,p:73244,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:Vel from the datatype registry for extension vel. +galaxy.datatypes.registry DEBUG 2024-02-23 13:08:02,176 [pN:main,p:73244,tN:MainThread] Retrieved datatype module galaxy.datatypes.molecules:grd from the datatype registry for extension grd. +galaxy.datatypes.registry DEBUG 2024-02-23 13:08:02,176 [pN:main,p:73244,tN:MainThread] Retrieved datatype module galaxy.datatypes.molecules:grdtgz from the datatype registry for extension grd.tgz. +galaxy.datatypes.registry DEBUG 2024-02-23 13:08:02,176 [pN:main,p:73244,tN:MainThread] Retrieved datatype module galaxy.datatypes.mothur:Otu from the datatype registry for extension mothur.otu. +galaxy.datatypes.registry DEBUG 2024-02-23 13:08:02,176 [pN:main,p:73244,tN:MainThread] Retrieved datatype module galaxy.datatypes.mothur:Otu from the datatype registry for extension mothur.list. +galaxy.datatypes.registry DEBUG 2024-02-23 13:08:02,177 [pN:main,p:73244,tN:MainThread] Retrieved datatype module galaxy.datatypes.mothur:Sabund from the datatype registry for extension mothur.sabund. +galaxy.datatypes.registry DEBUG 2024-02-23 13:08:02,177 [pN:main,p:73244,tN:MainThread] Retrieved datatype module galaxy.datatypes.mothur:Sabund from the datatype registry for extension mothur.rabund. +galaxy.datatypes.registry DEBUG 2024-02-23 13:08:02,177 [pN:main,p:73244,tN:MainThread] Retrieved datatype module galaxy.datatypes.mothur:GroupAbund from the datatype registry for extension mothur.shared. +galaxy.datatypes.registry DEBUG 2024-02-23 13:08:02,177 [pN:main,p:73244,tN:MainThread] Retrieved datatype module galaxy.datatypes.mothur:GroupAbund from the datatype registry for extension mothur.relabund. +galaxy.datatypes.registry DEBUG 2024-02-23 13:08:02,177 [pN:main,p:73244,tN:MainThread] Retrieved datatype module galaxy.datatypes.mothur:Names from the datatype registry for extension mothur.names. +galaxy.datatypes.registry DEBUG 2024-02-23 13:08:02,177 [pN:main,p:73244,tN:MainThread] Retrieved datatype module galaxy.datatypes.mothur:Group from the datatype registry for extension mothur.design. +galaxy.datatypes.registry DEBUG 2024-02-23 13:08:02,177 [pN:main,p:73244,tN:MainThread] Retrieved datatype module galaxy.datatypes.mothur:Summary from the datatype registry for extension mothur.summary. +galaxy.datatypes.registry DEBUG 2024-02-23 13:08:02,177 [pN:main,p:73244,tN:MainThread] Retrieved datatype module galaxy.datatypes.mothur:Group from the datatype registry for extension mothur.groups. +galaxy.datatypes.registry DEBUG 2024-02-23 13:08:02,177 [pN:main,p:73244,tN:MainThread] Retrieved datatype module galaxy.datatypes.mothur:Oligos from the datatype registry for extension mothur.oligos. +galaxy.datatypes.registry DEBUG 2024-02-23 13:08:02,178 [pN:main,p:73244,tN:MainThread] Retrieved datatype module galaxy.datatypes.sequence:Fasta from the datatype registry for extension mothur.align. +galaxy.datatypes.registry DEBUG 2024-02-23 13:08:02,178 [pN:main,p:73244,tN:MainThread] Retrieved datatype module galaxy.datatypes.mothur:AccNos from the datatype registry for extension mothur.accnos. +galaxy.datatypes.registry DEBUG 2024-02-23 13:08:02,178 [pN:main,p:73244,tN:MainThread] Retrieved datatype module galaxy.datatypes.mothur:AccNos from the datatype registry for extension mothur.otulabels. +galaxy.datatypes.registry DEBUG 2024-02-23 13:08:02,178 [pN:main,p:73244,tN:MainThread] Retrieved datatype module galaxy.datatypes.tabular:Tabular from the datatype registry for extension mothur.otu.corr. +galaxy.datatypes.registry DEBUG 2024-02-23 13:08:02,178 [pN:main,p:73244,tN:MainThread] Retrieved datatype module galaxy.datatypes.mothur:SecondaryStructureMap from the datatype registry for extension mothur.map. +galaxy.datatypes.registry DEBUG 2024-02-23 13:08:02,178 [pN:main,p:73244,tN:MainThread] Retrieved datatype module galaxy.datatypes.mothur:AlignCheck from the datatype registry for extension mothur.align.check. +galaxy.datatypes.registry DEBUG 2024-02-23 13:08:02,178 [pN:main,p:73244,tN:MainThread] Retrieved datatype module galaxy.datatypes.mothur:AlignReport from the datatype registry for extension mothur.align.report. +galaxy.datatypes.registry DEBUG 2024-02-23 13:08:02,178 [pN:main,p:73244,tN:MainThread] Retrieved datatype module galaxy.datatypes.mothur:LaneMask from the datatype registry for extension mothur.filter. +galaxy.datatypes.registry DEBUG 2024-02-23 13:08:02,178 [pN:main,p:73244,tN:MainThread] Retrieved datatype module galaxy.datatypes.mothur:DistanceMatrix from the datatype registry for extension mothur.dist. +galaxy.datatypes.registry DEBUG 2024-02-23 13:08:02,179 [pN:main,p:73244,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension mothur.tre. +galaxy.datatypes.registry DEBUG 2024-02-23 13:08:02,179 [pN:main,p:73244,tN:MainThread] Retrieved datatype module galaxy.datatypes.mothur:PairwiseDistanceMatrix from the datatype registry for extension mothur.pair.dist. +galaxy.datatypes.registry DEBUG 2024-02-23 13:08:02,179 [pN:main,p:73244,tN:MainThread] Retrieved datatype module galaxy.datatypes.mothur:SquareDistanceMatrix from the datatype registry for extension mothur.square.dist. +galaxy.datatypes.registry DEBUG 2024-02-23 13:08:02,179 [pN:main,p:73244,tN:MainThread] Retrieved datatype module galaxy.datatypes.mothur:LowerTriangleDistanceMatrix from the datatype registry for extension mothur.lower.dist. +galaxy.datatypes.registry DEBUG 2024-02-23 13:08:02,179 [pN:main,p:73244,tN:MainThread] Retrieved datatype module galaxy.datatypes.mothur:RefTaxonomy from the datatype registry for extension mothur.ref.taxonomy. +galaxy.datatypes.registry DEBUG 2024-02-23 13:08:02,179 [pN:main,p:73244,tN:MainThread] Retrieved datatype module galaxy.datatypes.mothur:RefTaxonomy from the datatype registry for extension mothur.seq.taxonomy. +galaxy.datatypes.registry DEBUG 2024-02-23 13:08:02,179 [pN:main,p:73244,tN:MainThread] Retrieved datatype module galaxy.datatypes.mothur:RefTaxonomy from the datatype registry for extension mothur.rdp.taxonomy. +galaxy.datatypes.registry DEBUG 2024-02-23 13:08:02,179 [pN:main,p:73244,tN:MainThread] Retrieved datatype module galaxy.datatypes.mothur:ConsensusTaxonomy from the datatype registry for extension mothur.cons.taxonomy. +galaxy.datatypes.registry DEBUG 2024-02-23 13:08:02,179 [pN:main,p:73244,tN:MainThread] Retrieved datatype module galaxy.datatypes.mothur:TaxonomySummary from the datatype registry for extension mothur.tax.summary. +galaxy.datatypes.registry DEBUG 2024-02-23 13:08:02,180 [pN:main,p:73244,tN:MainThread] Retrieved datatype module galaxy.datatypes.mothur:Frequency from the datatype registry for extension mothur.freq. +galaxy.datatypes.registry DEBUG 2024-02-23 13:08:02,180 [pN:main,p:73244,tN:MainThread] Retrieved datatype module galaxy.datatypes.mothur:Quantile from the datatype registry for extension mothur.quan. +galaxy.datatypes.registry DEBUG 2024-02-23 13:08:02,180 [pN:main,p:73244,tN:MainThread] Retrieved datatype module galaxy.datatypes.mothur:Quantile from the datatype registry for extension mothur.filtered.quan. +galaxy.datatypes.registry DEBUG 2024-02-23 13:08:02,180 [pN:main,p:73244,tN:MainThread] Retrieved datatype module galaxy.datatypes.mothur:Quantile from the datatype registry for extension mothur.masked.quan. +galaxy.datatypes.registry DEBUG 2024-02-23 13:08:02,180 [pN:main,p:73244,tN:MainThread] Retrieved datatype module galaxy.datatypes.mothur:Quantile from the datatype registry for extension mothur.filtered.masked.quan. +galaxy.datatypes.registry DEBUG 2024-02-23 13:08:02,180 [pN:main,p:73244,tN:MainThread] Retrieved datatype module galaxy.datatypes.mothur:Axes from the datatype registry for extension mothur.axes. +galaxy.datatypes.registry DEBUG 2024-02-23 13:08:02,180 [pN:main,p:73244,tN:MainThread] Retrieved datatype module galaxy.datatypes.mothur:SffFlow from the datatype registry for extension mothur.sff.flow. +galaxy.datatypes.registry DEBUG 2024-02-23 13:08:02,180 [pN:main,p:73244,tN:MainThread] Retrieved datatype module galaxy.datatypes.mothur:CountTable from the datatype registry for extension mothur.count_table. +galaxy.datatypes.registry DEBUG 2024-02-23 13:08:02,181 [pN:main,p:73244,tN:MainThread] Retrieved datatype module galaxy.datatypes.neo4j:Neo4jDB from the datatype registry for extension neostore. +galaxy.datatypes.registry DEBUG 2024-02-23 13:08:02,181 [pN:main,p:73244,tN:MainThread] Retrieved datatype module galaxy.datatypes.neo4j:Neo4jDBzip from the datatype registry for extension neostore.zip. +galaxy.datatypes.registry DEBUG 2024-02-23 13:08:02,181 [pN:main,p:73244,tN:MainThread] Retrieved datatype module galaxy.datatypes.tracks:UCSCTrackHub from the datatype registry for extension trackhub. +galaxy.datatypes.registry DEBUG 2024-02-23 13:08:02,182 [pN:main,p:73244,tN:MainThread] Retrieved datatype module galaxy.datatypes.blast:BlastXml from the datatype registry for extension blastxml. +galaxy.datatypes.registry DEBUG 2024-02-23 13:08:02,182 [pN:main,p:73244,tN:MainThread] Retrieved datatype module galaxy.datatypes.blast:BlastNucDb from the datatype registry for extension blastdbn. +galaxy.datatypes.registry DEBUG 2024-02-23 13:08:02,182 [pN:main,p:73244,tN:MainThread] Retrieved datatype module galaxy.datatypes.blast:BlastProtDb from the datatype registry for extension blastdbp. +galaxy.datatypes.registry DEBUG 2024-02-23 13:08:02,182 [pN:main,p:73244,tN:MainThread] Retrieved datatype module galaxy.datatypes.blast:BlastDomainDb from the datatype registry for extension blastdbd. +galaxy.datatypes.registry DEBUG 2024-02-23 13:08:02,183 [pN:main,p:73244,tN:MainThread] Retrieved datatype module galaxy.datatypes.blast:LastDb from the datatype registry for extension lastdb. +galaxy.datatypes.registry DEBUG 2024-02-23 13:08:02,183 [pN:main,p:73244,tN:MainThread] Retrieved datatype module galaxy.datatypes.blast:BlastNucDb5 from the datatype registry for extension blastdbn5. +galaxy.datatypes.registry DEBUG 2024-02-23 13:08:02,183 [pN:main,p:73244,tN:MainThread] Retrieved datatype module galaxy.datatypes.blast:BlastProtDb5 from the datatype registry for extension blastdbp5. +galaxy.datatypes.registry DEBUG 2024-02-23 13:08:02,183 [pN:main,p:73244,tN:MainThread] Retrieved datatype module galaxy.datatypes.blast:BlastDomainDb5 from the datatype registry for extension blastdbd5. +galaxy.datatypes.registry DEBUG 2024-02-23 13:08:02,183 [pN:main,p:73244,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:GenericAsn1 from the datatype registry for extension maskinfo-asn1. +galaxy.datatypes.registry DEBUG 2024-02-23 13:08:02,183 [pN:main,p:73244,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:GenericAsn1Binary from the datatype registry for extension maskinfo-asn1-binary. +galaxy.datatypes.registry DEBUG 2024-02-23 13:08:02,183 [pN:main,p:73244,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:GenericAsn1 from the datatype registry for extension pssm-asn1. +galaxy.datatypes.registry DEBUG 2024-02-23 13:08:02,184 [pN:main,p:73244,tN:MainThread] Retrieved datatype module galaxy.datatypes.plant_tribes:PlantTribesKsComponents from the datatype registry for extension ptkscmp. +galaxy.datatypes.registry DEBUG 2024-02-23 13:08:02,184 [pN:main,p:73244,tN:MainThread] Retrieved datatype module galaxy.datatypes.plant_tribes:Smat from the datatype registry for extension smat. +galaxy.datatypes.registry DEBUG 2024-02-23 13:08:02,184 [pN:main,p:73244,tN:MainThread] Retrieved datatype module galaxy.datatypes.genetics:GenotypeMatrix from the datatype registry for extension alohomora_gts. +galaxy.datatypes.registry DEBUG 2024-02-23 13:08:02,184 [pN:main,p:73244,tN:MainThread] Retrieved datatype module galaxy.datatypes.tabular:Tabular from the datatype registry for extension alohomora_map. +galaxy.datatypes.registry DEBUG 2024-02-23 13:08:02,184 [pN:main,p:73244,tN:MainThread] Retrieved datatype module galaxy.datatypes.tabular:Tabular from the datatype registry for extension alohomora_maf. +galaxy.datatypes.registry DEBUG 2024-02-23 13:08:02,185 [pN:main,p:73244,tN:MainThread] Retrieved datatype module galaxy.datatypes.tabular:Tabular from the datatype registry for extension alohomora_ped. +galaxy.datatypes.registry DEBUG 2024-02-23 13:08:02,185 [pN:main,p:73244,tN:MainThread] Retrieved datatype module galaxy.datatypes.tabular:Tabular from the datatype registry for extension linkage_pedin. +galaxy.datatypes.registry DEBUG 2024-02-23 13:08:02,185 [pN:main,p:73244,tN:MainThread] Retrieved datatype module galaxy.datatypes.genetics:DataIn from the datatype registry for extension linkage_datain. +galaxy.datatypes.registry DEBUG 2024-02-23 13:08:02,185 [pN:main,p:73244,tN:MainThread] Retrieved datatype module galaxy.datatypes.genetics:MarkerMap from the datatype registry for extension linkage_map. +galaxy.datatypes.registry DEBUG 2024-02-23 13:08:02,185 [pN:main,p:73244,tN:MainThread] Retrieved datatype module galaxy.datatypes.tabular:Tabular from the datatype registry for extension allegro_ihaplo. +galaxy.datatypes.registry DEBUG 2024-02-23 13:08:02,185 [pN:main,p:73244,tN:MainThread] Retrieved datatype module galaxy.datatypes.tabular:Tabular from the datatype registry for extension allegro_descent. +galaxy.datatypes.registry DEBUG 2024-02-23 13:08:02,185 [pN:main,p:73244,tN:MainThread] Retrieved datatype module galaxy.datatypes.genetics:AllegroLOD from the datatype registry for extension allegro_fparam. +galaxy.datatypes.registry DEBUG 2024-02-23 13:08:02,185 [pN:main,p:73244,tN:MainThread] Retrieved datatype module galaxy.datatypes.genetics:IdeasPre from the datatype registry for extension ideaspre. +galaxy.datatypes.registry DEBUG 2024-02-23 13:08:02,185 [pN:main,p:73244,tN:MainThread] Retrieved datatype module galaxy.datatypes.xml:Sbml from the datatype registry for extension sbml. +galaxy.datatypes.registry DEBUG 2024-02-23 13:08:02,187 [pN:main,p:73244,tN:MainThread] Retrieved datatype module galaxy.datatypes.spaln:SpalnNuclDb from the datatype registry for extension spalndbnp. +galaxy.datatypes.registry DEBUG 2024-02-23 13:08:02,187 [pN:main,p:73244,tN:MainThread] Retrieved datatype module galaxy.datatypes.spaln:SpalnProtDb from the datatype registry for extension spalndba. +galaxy.datatypes.registry DEBUG 2024-02-23 13:08:02,187 [pN:main,p:73244,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:RDS from the datatype registry for extension dada2_dada. +galaxy.datatypes.registry DEBUG 2024-02-23 13:08:02,187 [pN:main,p:73244,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:RDS from the datatype registry for extension dada2_errorrates. +galaxy.datatypes.registry DEBUG 2024-02-23 13:08:02,188 [pN:main,p:73244,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:RDS from the datatype registry for extension dada2_mergepairs. +galaxy.datatypes.registry DEBUG 2024-02-23 13:08:02,188 [pN:main,p:73244,tN:MainThread] Retrieved datatype module galaxy.datatypes.tabular:Tabular from the datatype registry for extension dada2_sequencetable. +galaxy.datatypes.registry DEBUG 2024-02-23 13:08:02,188 [pN:main,p:73244,tN:MainThread] Retrieved datatype module galaxy.datatypes.tabular:Tabular from the datatype registry for extension dada2_uniques. +galaxy.datatypes.registry DEBUG 2024-02-23 13:08:02,188 [pN:main,p:73244,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:RDS from the datatype registry for extension ampvis2. +galaxy.datatypes.registry DEBUG 2024-02-23 13:08:02,188 [pN:main,p:73244,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:Binary from the datatype registry for extension ckpt. +galaxy.datatypes.registry DEBUG 2024-02-23 13:08:02,188 [pN:main,p:73244,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:Binary from the datatype registry for extension tgz. +galaxy.datatypes.registry DEBUG 2024-02-23 13:08:02,191 [pN:main,p:73244,tN:MainThread] Retrieved datatype module galaxy.datatypes.media:Wav from the datatype registry for extension wav. +galaxy.datatypes.registry DEBUG 2024-02-23 13:08:02,191 [pN:main,p:73244,tN:MainThread] Retrieved datatype module galaxy.datatypes.media:Mp3 from the datatype registry for extension mp3. +galaxy.datatypes.registry DEBUG 2024-02-23 13:08:02,191 [pN:main,p:73244,tN:MainThread] Retrieved datatype module galaxy.datatypes.media:Mkv from the datatype registry for extension mkv. +galaxy.datatypes.registry DEBUG 2024-02-23 13:08:02,191 [pN:main,p:73244,tN:MainThread] Retrieved datatype module galaxy.datatypes.media:Mp4 from the datatype registry for extension mp4. +galaxy.datatypes.registry DEBUG 2024-02-23 13:08:02,191 [pN:main,p:73244,tN:MainThread] Retrieved datatype module galaxy.datatypes.media:Flv from the datatype registry for extension flv. +galaxy.datatypes.registry DEBUG 2024-02-23 13:08:02,191 [pN:main,p:73244,tN:MainThread] Retrieved datatype module galaxy.datatypes.media:Mpg from the datatype registry for extension mpg. +galaxy.datatypes.registry DEBUG 2024-02-23 13:08:02,192 [pN:main,p:73244,tN:MainThread] Retrieved datatype module galaxy.datatypes.speech:TextGrid from the datatype registry for extension textgrid. +galaxy.datatypes.registry DEBUG 2024-02-23 13:08:02,192 [pN:main,p:73244,tN:MainThread] Retrieved datatype module galaxy.datatypes.speech:BPF from the datatype registry for extension par. +galaxy.datatypes.registry DEBUG 2024-02-23 13:08:02,192 [pN:main,p:73244,tN:MainThread] Retrieved datatype module galaxy.datatypes.tabular:Tabular from the datatype registry for extension ffindex. +galaxy.datatypes.registry DEBUG 2024-02-23 13:08:02,192 [pN:main,p:73244,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:Data from the datatype registry for extension ffdata. +galaxy.datatypes.registry DEBUG 2024-02-23 13:08:02,192 [pN:main,p:73244,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:Pretext from the datatype registry for extension pretext. +galaxy.datatypes.registry DEBUG 2024-02-23 13:08:02,192 [pN:main,p:73244,tN:MainThread] Retrieved datatype module galaxy.datatypes.text:Html from the datatype registry for extension immuneml_receptors.html. +galaxy.datatypes.registry DEBUG 2024-02-23 13:08:02,192 [pN:main,p:73244,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:HexrdMaterials from the datatype registry for extension hexrd.materials.h5. +galaxy.datatypes.registry DEBUG 2024-02-23 13:08:02,192 [pN:main,p:73244,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:Npz from the datatype registry for extension npz. +galaxy.datatypes.registry DEBUG 2024-02-23 13:08:02,192 [pN:main,p:73244,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:HexrdImagesNpz from the datatype registry for extension hexrd.images.npz. +galaxy.datatypes.registry DEBUG 2024-02-23 13:08:02,193 [pN:main,p:73244,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:HexrdEtaOmeNpz from the datatype registry for extension hexrd.eta_ome.npz. +galaxy.datatypes.registry DEBUG 2024-02-23 13:08:02,193 [pN:main,p:73244,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:Npz from the datatype registry for extension hexrd.scored_orientations.npz. +galaxy.datatypes.registry DEBUG 2024-02-23 13:08:02,193 [pN:main,p:73244,tN:MainThread] Retrieved datatype module galaxy.datatypes.tabular:Tabular from the datatype registry for extension hexrd.accepted_orientations. +galaxy.datatypes.registry DEBUG 2024-02-23 13:08:02,193 [pN:main,p:73244,tN:MainThread] Retrieved datatype module galaxy.datatypes.text:Yaml from the datatype registry for extension hexrd.yml. +galaxy.datatypes.registry DEBUG 2024-02-23 13:08:02,193 [pN:main,p:73244,tN:MainThread] Retrieved datatype module galaxy.datatypes.constructive_solid_geometry:NeperTess from the datatype registry for extension neper.tess. +galaxy.datatypes.registry DEBUG 2024-02-23 13:08:02,193 [pN:main,p:73244,tN:MainThread] Retrieved datatype module galaxy.datatypes.constructive_solid_geometry:NeperTesr from the datatype registry for extension neper.tesr. +galaxy.datatypes.registry DEBUG 2024-02-23 13:08:02,193 [pN:main,p:73244,tN:MainThread] Retrieved datatype module galaxy.datatypes.constructive_solid_geometry:NeperPoints from the datatype registry for extension neper.points. +galaxy.datatypes.registry DEBUG 2024-02-23 13:08:02,193 [pN:main,p:73244,tN:MainThread] Retrieved datatype module galaxy.datatypes.constructive_solid_geometry:NeperPointsTabular from the datatype registry for extension neper.points.tsv. +galaxy.datatypes.registry DEBUG 2024-02-23 13:08:02,193 [pN:main,p:73244,tN:MainThread] Retrieved datatype module galaxy.datatypes.constructive_solid_geometry:NeperMultiScaleCell from the datatype registry for extension neper.mscell. +galaxy.datatypes.registry DEBUG 2024-02-23 13:08:02,194 [pN:main,p:73244,tN:MainThread] Retrieved datatype module galaxy.datatypes.constructive_solid_geometry:GmshMsh from the datatype registry for extension gmsh.msh. +galaxy.datatypes.registry DEBUG 2024-02-23 13:08:02,194 [pN:main,p:73244,tN:MainThread] Retrieved datatype module galaxy.datatypes.constructive_solid_geometry:GmshGeo from the datatype registry for extension gmsh.geo. +galaxy.datatypes.registry DEBUG 2024-02-23 13:08:02,194 [pN:main,p:73244,tN:MainThread] Retrieved datatype module galaxy.datatypes.constructive_solid_geometry:ZsetGeof from the datatype registry for extension zset.geof. +galaxy.datatypes.registry DEBUG 2024-02-23 13:08:02,194 [pN:main,p:73244,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:Binary from the datatype registry for extension stl. +galaxy.datatypes.registry DEBUG 2024-02-23 13:08:02,194 [pN:main,p:73244,tN:MainThread] Overriding conflicting datatype with extension 'stl', using datatype from /scratch/rico/galaxy/lib/galaxy/config/sample/datatypes_conf.xml.sample. +galaxy.datatypes.registry DEBUG 2024-02-23 13:08:02,194 [pN:main,p:73244,tN:MainThread] Retrieved datatype module galaxy.datatypes.text:Text from the datatype registry for extension pov. +galaxy.datatypes.registry DEBUG 2024-02-23 13:08:02,194 [pN:main,p:73244,tN:MainThread] Retrieved datatype module galaxy.datatypes.text:PithyaResult from the datatype registry for extension pithya.result. +galaxy.datatypes.registry DEBUG 2024-02-23 13:08:02,194 [pN:main,p:73244,tN:MainThread] Retrieved datatype module galaxy.datatypes.text:PithyaProperty from the datatype registry for extension pithya.property. +galaxy.datatypes.registry DEBUG 2024-02-23 13:08:02,194 [pN:main,p:73244,tN:MainThread] Retrieved datatype module galaxy.datatypes.text:PithyaModel from the datatype registry for extension pithya.model. +galaxy.datatypes.registry DEBUG 2024-02-23 13:08:02,194 [pN:main,p:73244,tN:MainThread] Retrieved datatype module galaxy.datatypes.text:BCSLts from the datatype registry for extension bcsl.ts. +galaxy.datatypes.registry DEBUG 2024-02-23 13:08:02,194 [pN:main,p:73244,tN:MainThread] Retrieved datatype module galaxy.datatypes.text:BCSLmodel from the datatype registry for extension bcsl.model. +galaxy.datatypes.registry DEBUG 2024-02-23 13:08:02,195 [pN:main,p:73244,tN:MainThread] Retrieved datatype module galaxy.datatypes.text:StormSample from the datatype registry for extension storm.sample. +galaxy.datatypes.registry DEBUG 2024-02-23 13:08:02,195 [pN:main,p:73244,tN:MainThread] Retrieved datatype module galaxy.datatypes.text:StormCheck from the datatype registry for extension storm.check. +galaxy.datatypes.registry DEBUG 2024-02-23 13:08:02,195 [pN:main,p:73244,tN:MainThread] Retrieved datatype module galaxy.datatypes.text:CTLresult from the datatype registry for extension ctl.result. +galaxy.datatypes.registry DEBUG 2024-02-23 13:08:02,195 [pN:main,p:73244,tN:MainThread] Retrieved datatype module galaxy.datatypes.text:Castep from the datatype registry for extension castep. +galaxy.datatypes.registry DEBUG 2024-02-23 13:08:02,195 [pN:main,p:73244,tN:MainThread] Retrieved datatype module galaxy.datatypes.text:Param from the datatype registry for extension param. +galaxy.datatypes.registry DEBUG 2024-02-23 13:08:02,195 [pN:main,p:73244,tN:MainThread] Retrieved datatype module galaxy.datatypes.text:FormattedDensity from the datatype registry for extension den_fmt. +galaxy.datatypes.registry DEBUG 2024-02-23 13:08:02,196 [pN:main,p:73244,tN:MainThread] Retrieved datatype module galaxy.datatypes.larch:AthenaProject from the datatype registry for extension prj. +galaxy.datatypes.registry DEBUG 2024-02-23 13:08:02,196 [pN:main,p:73244,tN:MainThread] Retrieved datatype module galaxy.datatypes.larch:FEFFInput from the datatype registry for extension inp. +galaxy.datatypes.registry DEBUG 2024-02-23 13:08:02,196 [pN:main,p:73244,tN:MainThread] Retrieved datatype module galaxy.datatypes.tabular:CSV from the datatype registry for extension sp. +galaxy.datatypes.registry DEBUG 2024-02-23 13:08:02,196 [pN:main,p:73244,tN:MainThread] Retrieved datatype module galaxy.datatypes.tabular:CSV from the datatype registry for extension gds. +galaxy.datatypes.registry DEBUG 2024-02-23 13:08:02,196 [pN:main,p:73244,tN:MainThread] Retrieved datatype module galaxy.datatypes.tabular:CSV from the datatype registry for extension feff. +galaxy.datatypes.registry DEBUG 2024-02-23 13:08:02,196 [pN:main,p:73244,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension feffit. +galaxy.datatypes.registry DEBUG 2024-02-23 13:08:02,196 [pN:main,p:73244,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:Binary from the datatype registry for extension bil. +galaxy.datatypes.registry DEBUG 2024-02-23 13:08:02,197 [pN:main,p:73244,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension hdr. +galaxy.datatypes.registry DEBUG 2024-02-23 13:08:02,197 [pN:main,p:73244,tN:MainThread] Retrieved datatype module galaxy.datatypes.gis:Shapefile from the datatype registry for extension shp. +galaxy.datatypes.registry DEBUG 2024-02-23 13:08:02,197 [pN:main,p:73244,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:FITS from the datatype registry for extension fits. +galaxy.datatypes.registry DEBUG 2024-02-23 13:08:02,197 [pN:main,p:73244,tN:MainThread] Retrieved datatype module galaxy.datatypes.chain:Chain from the datatype registry for extension chain. +galaxy.datatypes.registry DEBUG 2024-02-23 13:08:02,198 [pN:main,p:73244,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.plant_tribes:PlantTribesKsComponents' +galaxy.datatypes.registry DEBUG 2024-02-23 13:08:02,198 [pN:main,p:73244,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.plant_tribes:Smat' +galaxy.datatypes.registry DEBUG 2024-02-23 13:08:02,198 [pN:main,p:73244,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.mothur:Sabund' +galaxy.datatypes.registry DEBUG 2024-02-23 13:08:02,198 [pN:main,p:73244,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.mothur:Otu' +galaxy.datatypes.registry DEBUG 2024-02-23 13:08:02,198 [pN:main,p:73244,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.mothur:GroupAbund' +galaxy.datatypes.registry DEBUG 2024-02-23 13:08:02,198 [pN:main,p:73244,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.mothur:SecondaryStructureMap' +galaxy.datatypes.registry DEBUG 2024-02-23 13:08:02,198 [pN:main,p:73244,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.mothur:LowerTriangleDistanceMatrix' +galaxy.datatypes.registry DEBUG 2024-02-23 13:08:02,198 [pN:main,p:73244,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.mothur:SquareDistanceMatrix' +galaxy.datatypes.registry DEBUG 2024-02-23 13:08:02,198 [pN:main,p:73244,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.mothur:PairwiseDistanceMatrix' +galaxy.datatypes.registry DEBUG 2024-02-23 13:08:02,198 [pN:main,p:73244,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.mothur:Oligos' +galaxy.datatypes.registry DEBUG 2024-02-23 13:08:02,198 [pN:main,p:73244,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.mothur:Quantile' +galaxy.datatypes.registry DEBUG 2024-02-23 13:08:02,198 [pN:main,p:73244,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.mothur:Frequency' +galaxy.datatypes.registry DEBUG 2024-02-23 13:08:02,199 [pN:main,p:73244,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.mothur:LaneMask' +galaxy.datatypes.registry DEBUG 2024-02-23 13:08:02,199 [pN:main,p:73244,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.mothur:RefTaxonomy' +galaxy.datatypes.registry DEBUG 2024-02-23 13:08:02,199 [pN:main,p:73244,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.mothur:Axes' +galaxy.datatypes.registry DEBUG 2024-02-23 13:08:02,199 [pN:main,p:73244,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.constructive_solid_geometry:PlyAscii' +galaxy.datatypes.registry DEBUG 2024-02-23 13:08:02,199 [pN:main,p:73244,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.constructive_solid_geometry:PlyBinary' +galaxy.datatypes.registry DEBUG 2024-02-23 13:08:02,199 [pN:main,p:73244,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.constructive_solid_geometry:VtkAscii' +galaxy.datatypes.registry DEBUG 2024-02-23 13:08:02,199 [pN:main,p:73244,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.constructive_solid_geometry:VtkBinary' +galaxy.datatypes.registry DEBUG 2024-02-23 13:08:02,199 [pN:main,p:73244,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.constructive_solid_geometry:NeperTess' +galaxy.datatypes.registry DEBUG 2024-02-23 13:08:02,199 [pN:main,p:73244,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.constructive_solid_geometry:NeperTesr' +galaxy.datatypes.registry DEBUG 2024-02-23 13:08:02,199 [pN:main,p:73244,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.constructive_solid_geometry:GmshMsh' +galaxy.datatypes.registry DEBUG 2024-02-23 13:08:02,199 [pN:main,p:73244,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.goldenpath:GoldenPath' +galaxy.datatypes.registry DEBUG 2024-02-23 13:08:02,199 [pN:main,p:73244,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.interval:ScIdx' +galaxy.datatypes.registry DEBUG 2024-02-23 13:08:02,199 [pN:main,p:73244,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.tabular:Vcf' +galaxy.datatypes.registry DEBUG 2024-02-23 13:08:02,199 [pN:main,p:73244,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.binary:JP2' +galaxy.datatypes.registry DEBUG 2024-02-23 13:08:02,199 [pN:main,p:73244,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.binary:TwoBit' +galaxy.datatypes.registry DEBUG 2024-02-23 13:08:02,199 [pN:main,p:73244,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.binary:GeminiSQLite' +galaxy.datatypes.registry DEBUG 2024-02-23 13:08:02,199 [pN:main,p:73244,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.binary:SQmass' +galaxy.datatypes.registry DEBUG 2024-02-23 13:08:02,199 [pN:main,p:73244,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.binary:MzSQlite' +galaxy.datatypes.registry DEBUG 2024-02-23 13:08:02,200 [pN:main,p:73244,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.binary:OSW' +galaxy.datatypes.registry DEBUG 2024-02-23 13:08:02,200 [pN:main,p:73244,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.binary:PQP' +galaxy.datatypes.registry DEBUG 2024-02-23 13:08:02,200 [pN:main,p:73244,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.binary:IdpDB' +galaxy.datatypes.registry DEBUG 2024-02-23 13:08:02,200 [pN:main,p:73244,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.binary:ElibSQlite' +galaxy.datatypes.registry DEBUG 2024-02-23 13:08:02,200 [pN:main,p:73244,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.binary:DlibSQlite' +galaxy.datatypes.registry DEBUG 2024-02-23 13:08:02,200 [pN:main,p:73244,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.binary:BlibSQlite' +galaxy.datatypes.registry DEBUG 2024-02-23 13:08:02,200 [pN:main,p:73244,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.binary:ChiraSQLite' +galaxy.datatypes.registry DEBUG 2024-02-23 13:08:02,200 [pN:main,p:73244,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.binary:CuffDiffSQlite' +galaxy.datatypes.registry DEBUG 2024-02-23 13:08:02,200 [pN:main,p:73244,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.binary:GAFASQLite' +galaxy.datatypes.registry DEBUG 2024-02-23 13:08:02,200 [pN:main,p:73244,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.binary:NcbiTaxonomySQlite' +galaxy.datatypes.registry DEBUG 2024-02-23 13:08:02,200 [pN:main,p:73244,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.binary:SQlite' +galaxy.datatypes.registry DEBUG 2024-02-23 13:08:02,200 [pN:main,p:73244,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.binary:H5MLM' +galaxy.datatypes.registry DEBUG 2024-02-23 13:08:02,200 [pN:main,p:73244,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.binary:Cool' +galaxy.datatypes.registry DEBUG 2024-02-23 13:08:02,200 [pN:main,p:73244,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.binary:MCool' +galaxy.datatypes.registry DEBUG 2024-02-23 13:08:02,200 [pN:main,p:73244,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.binary:Loom' +galaxy.datatypes.registry DEBUG 2024-02-23 13:08:02,200 [pN:main,p:73244,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.binary:Anndata' +galaxy.datatypes.registry DEBUG 2024-02-23 13:08:02,200 [pN:main,p:73244,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.binary:Biom2' +galaxy.datatypes.registry DEBUG 2024-02-23 13:08:02,200 [pN:main,p:73244,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.binary:HexrdMaterials' +galaxy.datatypes.registry DEBUG 2024-02-23 13:08:02,201 [pN:main,p:73244,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.binary:H5' +galaxy.datatypes.registry DEBUG 2024-02-23 13:08:02,201 [pN:main,p:73244,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.binary:Grib' +galaxy.datatypes.registry DEBUG 2024-02-23 13:08:02,201 [pN:main,p:73244,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.binary:HexrdImagesNpz' +galaxy.datatypes.registry DEBUG 2024-02-23 13:08:02,201 [pN:main,p:73244,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.binary:HexrdEtaOmeNpz' +galaxy.datatypes.registry DEBUG 2024-02-23 13:08:02,201 [pN:main,p:73244,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.binary:Npz' +galaxy.datatypes.registry DEBUG 2024-02-23 13:08:02,201 [pN:main,p:73244,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.binary:Bam' +galaxy.datatypes.registry DEBUG 2024-02-23 13:08:02,201 [pN:main,p:73244,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.binary:BamQuerynameSorted' +galaxy.datatypes.registry DEBUG 2024-02-23 13:08:02,201 [pN:main,p:73244,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.binary:BamNative' +galaxy.datatypes.registry DEBUG 2024-02-23 13:08:02,201 [pN:main,p:73244,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.binary:CRAM' +galaxy.datatypes.registry DEBUG 2024-02-23 13:08:02,201 [pN:main,p:73244,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.binary:Sff' +galaxy.datatypes.registry DEBUG 2024-02-23 13:08:02,201 [pN:main,p:73244,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.binary:Sra' +galaxy.datatypes.registry DEBUG 2024-02-23 13:08:02,201 [pN:main,p:73244,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.binary:NetCDF' +galaxy.datatypes.registry DEBUG 2024-02-23 13:08:02,201 [pN:main,p:73244,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.binary:DAA' +galaxy.datatypes.registry DEBUG 2024-02-23 13:08:02,201 [pN:main,p:73244,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.binary:RMA6' +galaxy.datatypes.registry DEBUG 2024-02-23 13:08:02,201 [pN:main,p:73244,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.binary:DMND' +galaxy.datatypes.registry DEBUG 2024-02-23 13:08:02,202 [pN:main,p:73244,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.binary:Parquet' +galaxy.datatypes.registry DEBUG 2024-02-23 13:08:02,202 [pN:main,p:73244,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.binary:BafTar' +galaxy.datatypes.registry DEBUG 2024-02-23 13:08:02,202 [pN:main,p:73244,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.binary:TdfTar' +galaxy.datatypes.registry DEBUG 2024-02-23 13:08:02,202 [pN:main,p:73244,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.binary:MassHunterTar' +galaxy.datatypes.registry DEBUG 2024-02-23 13:08:02,202 [pN:main,p:73244,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.binary:MassLynxTar' +galaxy.datatypes.registry DEBUG 2024-02-23 13:08:02,202 [pN:main,p:73244,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.binary:YepTar' +galaxy.datatypes.registry DEBUG 2024-02-23 13:08:02,202 [pN:main,p:73244,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.binary:WiffTar' +galaxy.datatypes.registry DEBUG 2024-02-23 13:08:02,202 [pN:main,p:73244,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.binary:Fast5ArchiveGz' +galaxy.datatypes.registry DEBUG 2024-02-23 13:08:02,202 [pN:main,p:73244,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.binary:Fast5ArchiveBz2' +galaxy.datatypes.registry DEBUG 2024-02-23 13:08:02,202 [pN:main,p:73244,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.binary:Fast5Archive' +galaxy.datatypes.registry DEBUG 2024-02-23 13:08:02,202 [pN:main,p:73244,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.binary:Meryldb' +galaxy.datatypes.registry DEBUG 2024-02-23 13:08:02,202 [pN:main,p:73244,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.binary:Bref3' +galaxy.datatypes.registry DEBUG 2024-02-23 13:08:02,202 [pN:main,p:73244,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.binary:PostgresqlArchive' +galaxy.datatypes.registry DEBUG 2024-02-23 13:08:02,202 [pN:main,p:73244,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.binary:ICM' +galaxy.datatypes.registry DEBUG 2024-02-23 13:08:02,202 [pN:main,p:73244,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.binary:Idat' +galaxy.datatypes.registry DEBUG 2024-02-23 13:08:02,202 [pN:main,p:73244,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.binary:Trr' +galaxy.datatypes.registry DEBUG 2024-02-23 13:08:02,202 [pN:main,p:73244,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.binary:Dcd' +galaxy.datatypes.registry DEBUG 2024-02-23 13:08:02,203 [pN:main,p:73244,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.binary:Xtc' +galaxy.datatypes.registry DEBUG 2024-02-23 13:08:02,203 [pN:main,p:73244,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.binary:Cpt' +galaxy.datatypes.registry DEBUG 2024-02-23 13:08:02,203 [pN:main,p:73244,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.binary:Edr' +galaxy.datatypes.registry DEBUG 2024-02-23 13:08:02,203 [pN:main,p:73244,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.binary:Vel' +galaxy.datatypes.registry DEBUG 2024-02-23 13:08:02,203 [pN:main,p:73244,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.binary:Xlsx' +galaxy.datatypes.registry DEBUG 2024-02-23 13:08:02,203 [pN:main,p:73244,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.qiime2:QIIME2Metadata' +galaxy.datatypes.registry DEBUG 2024-02-23 13:08:02,203 [pN:main,p:73244,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.qiime2:QIIME2Artifact' +galaxy.datatypes.registry DEBUG 2024-02-23 13:08:02,203 [pN:main,p:73244,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.qiime2:QIIME2Visualization' +galaxy.datatypes.registry DEBUG 2024-02-23 13:08:02,203 [pN:main,p:73244,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.binary:CompressedZipArchive' +galaxy.datatypes.registry DEBUG 2024-02-23 13:08:02,203 [pN:main,p:73244,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.binary:Pretext' +galaxy.datatypes.registry DEBUG 2024-02-23 13:08:02,203 [pN:main,p:73244,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.annotation:Augustus' +galaxy.datatypes.registry DEBUG 2024-02-23 13:08:02,203 [pN:main,p:73244,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.xml:Owl' +galaxy.datatypes.registry DEBUG 2024-02-23 13:08:02,203 [pN:main,p:73244,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.chain:Chain' +galaxy.datatypes.registry DEBUG 2024-02-23 13:08:02,203 [pN:main,p:73244,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.triples:Rdf' +galaxy.datatypes.registry DEBUG 2024-02-23 13:08:02,203 [pN:main,p:73244,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.blast:BlastXml' +galaxy.datatypes.registry DEBUG 2024-02-23 13:08:02,204 [pN:main,p:73244,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.images:Gifti' +galaxy.datatypes.registry DEBUG 2024-02-23 13:08:02,204 [pN:main,p:73244,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.xml:Phyloxml' +galaxy.datatypes.registry DEBUG 2024-02-23 13:08:02,204 [pN:main,p:73244,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.xml:Dzi' +galaxy.datatypes.registry DEBUG 2024-02-23 13:08:02,204 [pN:main,p:73244,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.xml:Sbml' +galaxy.datatypes.registry DEBUG 2024-02-23 13:08:02,204 [pN:main,p:73244,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.proteomics:Dta2d' +galaxy.datatypes.registry DEBUG 2024-02-23 13:08:02,204 [pN:main,p:73244,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.proteomics:Edta' +galaxy.datatypes.registry DEBUG 2024-02-23 13:08:02,204 [pN:main,p:73244,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.proteomics:ConsensusXML' +galaxy.datatypes.registry DEBUG 2024-02-23 13:08:02,204 [pN:main,p:73244,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.proteomics:IdXML' +galaxy.datatypes.registry DEBUG 2024-02-23 13:08:02,204 [pN:main,p:73244,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.proteomics:FeatureXML' +galaxy.datatypes.registry DEBUG 2024-02-23 13:08:02,204 [pN:main,p:73244,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.proteomics:MascotXML' +galaxy.datatypes.registry DEBUG 2024-02-23 13:08:02,204 [pN:main,p:73244,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.proteomics:Mgf' +galaxy.datatypes.registry DEBUG 2024-02-23 13:08:02,204 [pN:main,p:73244,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.proteomics:Ms2' +galaxy.datatypes.registry DEBUG 2024-02-23 13:08:02,204 [pN:main,p:73244,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.proteomics:Msp' +galaxy.datatypes.registry DEBUG 2024-02-23 13:08:02,204 [pN:main,p:73244,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.proteomics:MzData' +galaxy.datatypes.registry DEBUG 2024-02-23 13:08:02,204 [pN:main,p:73244,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.proteomics:MzIdentML' +galaxy.datatypes.registry DEBUG 2024-02-23 13:08:02,205 [pN:main,p:73244,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.proteomics:MzML' +galaxy.datatypes.registry DEBUG 2024-02-23 13:08:02,205 [pN:main,p:73244,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.proteomics:MzQuantML' +galaxy.datatypes.registry DEBUG 2024-02-23 13:08:02,205 [pN:main,p:73244,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.proteomics:MzTab' +galaxy.datatypes.registry DEBUG 2024-02-23 13:08:02,205 [pN:main,p:73244,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.proteomics:MzTab2' +galaxy.datatypes.registry DEBUG 2024-02-23 13:08:02,205 [pN:main,p:73244,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.proteomics:ParamXml' +galaxy.datatypes.registry DEBUG 2024-02-23 13:08:02,205 [pN:main,p:73244,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.proteomics:MzXML' +galaxy.datatypes.registry DEBUG 2024-02-23 13:08:02,205 [pN:main,p:73244,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.proteomics:NmrML' +galaxy.datatypes.registry DEBUG 2024-02-23 13:08:02,205 [pN:main,p:73244,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.proteomics:Kroenik' +galaxy.datatypes.registry DEBUG 2024-02-23 13:08:02,205 [pN:main,p:73244,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.proteomics:PepList' +galaxy.datatypes.registry DEBUG 2024-02-23 13:08:02,205 [pN:main,p:73244,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.proteomics:PSMS' +galaxy.datatypes.registry DEBUG 2024-02-23 13:08:02,205 [pN:main,p:73244,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.proteomics:PepXml' +galaxy.datatypes.registry DEBUG 2024-02-23 13:08:02,205 [pN:main,p:73244,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.proteomics:ProtXML' +galaxy.datatypes.registry DEBUG 2024-02-23 13:08:02,205 [pN:main,p:73244,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.proteomics:SPLib' +galaxy.datatypes.registry DEBUG 2024-02-23 13:08:02,205 [pN:main,p:73244,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.proteomics:TandemXML' +galaxy.datatypes.registry DEBUG 2024-02-23 13:08:02,206 [pN:main,p:73244,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.proteomics:ThermoRAW' +galaxy.datatypes.registry DEBUG 2024-02-23 13:08:02,206 [pN:main,p:73244,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.proteomics:TraML' +galaxy.datatypes.registry DEBUG 2024-02-23 13:08:02,206 [pN:main,p:73244,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.proteomics:TrafoXML' +galaxy.datatypes.registry DEBUG 2024-02-23 13:08:02,206 [pN:main,p:73244,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.proteomics:UniProtXML' +galaxy.datatypes.registry DEBUG 2024-02-23 13:08:02,206 [pN:main,p:73244,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.proteomics:XquestXML' +galaxy.datatypes.registry DEBUG 2024-02-23 13:08:02,206 [pN:main,p:73244,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.proteomics:XquestSpecXML' +galaxy.datatypes.registry DEBUG 2024-02-23 13:08:02,206 [pN:main,p:73244,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.proteomics:QCML' +galaxy.datatypes.registry DEBUG 2024-02-23 13:08:02,206 [pN:main,p:73244,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.proteomics:Wiff' +galaxy.datatypes.registry DEBUG 2024-02-23 13:08:02,206 [pN:main,p:73244,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.proteomics:PEFF' +galaxy.datatypes.registry DEBUG 2024-02-23 13:08:02,206 [pN:main,p:73244,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.molecules:CML' +galaxy.datatypes.registry DEBUG 2024-02-23 13:08:02,206 [pN:main,p:73244,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.xml:GenericXml' +galaxy.datatypes.registry DEBUG 2024-02-23 13:08:02,206 [pN:main,p:73244,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.triples:HDT' +galaxy.datatypes.registry DEBUG 2024-02-23 13:08:02,206 [pN:main,p:73244,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.triples:Turtle' +galaxy.datatypes.registry DEBUG 2024-02-23 13:08:02,206 [pN:main,p:73244,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.triples:NTriples' +galaxy.datatypes.registry DEBUG 2024-02-23 13:08:02,207 [pN:main,p:73244,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.triples:Jsonld' +galaxy.datatypes.registry DEBUG 2024-02-23 13:08:02,207 [pN:main,p:73244,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.sequence:Maf' +galaxy.datatypes.registry DEBUG 2024-02-23 13:08:02,207 [pN:main,p:73244,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.sequence:Lav' +galaxy.datatypes.registry DEBUG 2024-02-23 13:08:02,207 [pN:main,p:73244,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.sequence:MemePsp' +galaxy.datatypes.registry DEBUG 2024-02-23 13:08:02,207 [pN:main,p:73244,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.sequence:Fastg' +galaxy.datatypes.registry DEBUG 2024-02-23 13:08:02,207 [pN:main,p:73244,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.sequence:csFasta' +galaxy.datatypes.registry DEBUG 2024-02-23 13:08:02,207 [pN:main,p:73244,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.qualityscore:QualityScoreSOLiD' +galaxy.datatypes.registry DEBUG 2024-02-23 13:08:02,207 [pN:main,p:73244,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.qualityscore:QualityScore454' +galaxy.datatypes.registry DEBUG 2024-02-23 13:08:02,207 [pN:main,p:73244,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.molecules:SDF' +galaxy.datatypes.registry DEBUG 2024-02-23 13:08:02,207 [pN:main,p:73244,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.molecules:PDB' +galaxy.datatypes.registry DEBUG 2024-02-23 13:08:02,207 [pN:main,p:73244,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.molecules:Cell' +galaxy.datatypes.registry DEBUG 2024-02-23 13:08:02,207 [pN:main,p:73244,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.molecules:CIF' +galaxy.datatypes.registry DEBUG 2024-02-23 13:08:02,207 [pN:main,p:73244,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.molecules:ExtendedXYZ' +galaxy.datatypes.registry DEBUG 2024-02-23 13:08:02,207 [pN:main,p:73244,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.molecules:XYZ' +galaxy.datatypes.registry DEBUG 2024-02-23 13:08:02,208 [pN:main,p:73244,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.molecules:MOL2' +galaxy.datatypes.registry DEBUG 2024-02-23 13:08:02,208 [pN:main,p:73244,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.molecules:InChI' +galaxy.datatypes.registry DEBUG 2024-02-23 13:08:02,208 [pN:main,p:73244,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.molecules:FPS' +galaxy.datatypes.registry DEBUG 2024-02-23 13:08:02,208 [pN:main,p:73244,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.molecules:PQR' +galaxy.datatypes.registry DEBUG 2024-02-23 13:08:02,208 [pN:main,p:73244,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.molecules:GRO' +galaxy.datatypes.registry DEBUG 2024-02-23 13:08:02,208 [pN:main,p:73244,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.phylip:Phylip' +galaxy.datatypes.registry DEBUG 2024-02-23 13:08:02,208 [pN:main,p:73244,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.sequence:Fasta' +galaxy.datatypes.registry DEBUG 2024-02-23 13:08:02,208 [pN:main,p:73244,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.sequence:FastqCSSanger' +galaxy.datatypes.registry DEBUG 2024-02-23 13:08:02,208 [pN:main,p:73244,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.sequence:FastqSanger' +galaxy.datatypes.registry DEBUG 2024-02-23 13:08:02,208 [pN:main,p:73244,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.sequence:Fastq' +galaxy.datatypes.registry DEBUG 2024-02-23 13:08:02,208 [pN:main,p:73244,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.interval:Wiggle' +galaxy.datatypes.registry DEBUG 2024-02-23 13:08:02,208 [pN:main,p:73244,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.text:Html' +galaxy.datatypes.registry DEBUG 2024-02-23 13:08:02,208 [pN:main,p:73244,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.images:Pdf' +galaxy.datatypes.registry DEBUG 2024-02-23 13:08:02,209 [pN:main,p:73244,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.sequence:Axt' +galaxy.datatypes.registry DEBUG 2024-02-23 13:08:02,209 [pN:main,p:73244,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.sequence:Genbank' +galaxy.datatypes.registry DEBUG 2024-02-23 13:08:02,209 [pN:main,p:73244,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.interval:Bed' +galaxy.datatypes.registry DEBUG 2024-02-23 13:08:02,209 [pN:main,p:73244,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.interval:CustomTrack' +galaxy.datatypes.registry DEBUG 2024-02-23 13:08:02,209 [pN:main,p:73244,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.interval:Gtf' +galaxy.datatypes.registry DEBUG 2024-02-23 13:08:02,209 [pN:main,p:73244,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.interval:Gff' +galaxy.datatypes.registry DEBUG 2024-02-23 13:08:02,209 [pN:main,p:73244,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.interval:Gff3' +galaxy.datatypes.registry DEBUG 2024-02-23 13:08:02,209 [pN:main,p:73244,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.tabular:Pileup' +galaxy.datatypes.registry DEBUG 2024-02-23 13:08:02,209 [pN:main,p:73244,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.tabular:Psl' +galaxy.datatypes.registry DEBUG 2024-02-23 13:08:02,209 [pN:main,p:73244,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.text:Paf' +galaxy.datatypes.registry DEBUG 2024-02-23 13:08:02,209 [pN:main,p:73244,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.interval:Interval' +galaxy.datatypes.registry DEBUG 2024-02-23 13:08:02,209 [pN:main,p:73244,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.tabular:Sam' +galaxy.datatypes.registry DEBUG 2024-02-23 13:08:02,210 [pN:main,p:73244,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.data:Newick' +galaxy.datatypes.registry DEBUG 2024-02-23 13:08:02,210 [pN:main,p:73244,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.data:Nexus' +galaxy.datatypes.registry DEBUG 2024-02-23 13:08:02,210 [pN:main,p:73244,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.text:IQTree' +galaxy.datatypes.registry DEBUG 2024-02-23 13:08:02,210 [pN:main,p:73244,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.text:Obo' +galaxy.datatypes.registry DEBUG 2024-02-23 13:08:02,210 [pN:main,p:73244,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.text:Arff' +galaxy.datatypes.registry DEBUG 2024-02-23 13:08:02,210 [pN:main,p:73244,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.text:Ipynb' +galaxy.datatypes.registry DEBUG 2024-02-23 13:08:02,210 [pN:main,p:73244,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.text:Biom1' +galaxy.datatypes.registry DEBUG 2024-02-23 13:08:02,210 [pN:main,p:73244,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.text:ImgtJson' +galaxy.datatypes.registry DEBUG 2024-02-23 13:08:02,210 [pN:main,p:73244,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.text:GeoJson' +galaxy.datatypes.registry DEBUG 2024-02-23 13:08:02,210 [pN:main,p:73244,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.text:PithyaResult' +galaxy.datatypes.registry DEBUG 2024-02-23 13:08:02,210 [pN:main,p:73244,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.text:BCSLts' +galaxy.datatypes.registry DEBUG 2024-02-23 13:08:02,210 [pN:main,p:73244,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.text:Json' +galaxy.datatypes.registry DEBUG 2024-02-23 13:08:02,210 [pN:main,p:73244,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.genetics:GenotypeMatrix' +galaxy.datatypes.registry DEBUG 2024-02-23 13:08:02,210 [pN:main,p:73244,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.genetics:DataIn' +galaxy.datatypes.registry DEBUG 2024-02-23 13:08:02,211 [pN:main,p:73244,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.genetics:MarkerMap' +galaxy.datatypes.registry DEBUG 2024-02-23 13:08:02,211 [pN:main,p:73244,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.genetics:AllegroLOD' +galaxy.datatypes.registry DEBUG 2024-02-23 13:08:02,211 [pN:main,p:73244,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.sequence:RNADotPlotMatrix' +galaxy.datatypes.registry DEBUG 2024-02-23 13:08:02,211 [pN:main,p:73244,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.sequence:DotBracket' +galaxy.datatypes.registry DEBUG 2024-02-23 13:08:02,211 [pN:main,p:73244,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.tabular:CMAP' +galaxy.datatypes.registry DEBUG 2024-02-23 13:08:02,211 [pN:main,p:73244,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.tabular:ConnectivityTable' +galaxy.datatypes.registry DEBUG 2024-02-23 13:08:02,211 [pN:main,p:73244,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.tabular:CSV' +galaxy.datatypes.registry DEBUG 2024-02-23 13:08:02,211 [pN:main,p:73244,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.metacyto:mSummary' +galaxy.datatypes.registry DEBUG 2024-02-23 13:08:02,211 [pN:main,p:73244,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.metacyto:mStats' +galaxy.datatypes.registry DEBUG 2024-02-23 13:08:02,211 [pN:main,p:73244,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.tabular:TSV' +galaxy.datatypes.registry DEBUG 2024-02-23 13:08:02,211 [pN:main,p:73244,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.tabular:MatrixMarket' +galaxy.datatypes.registry DEBUG 2024-02-23 13:08:02,211 [pN:main,p:73244,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.msa:Hmmer2' +galaxy.datatypes.registry DEBUG 2024-02-23 13:08:02,212 [pN:main,p:73244,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.msa:Hmmer3' +galaxy.datatypes.registry DEBUG 2024-02-23 13:08:02,212 [pN:main,p:73244,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.msa:Stockholm_1_0' +galaxy.datatypes.registry DEBUG 2024-02-23 13:08:02,212 [pN:main,p:73244,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.msa:MauveXmfa' +galaxy.datatypes.registry DEBUG 2024-02-23 13:08:02,212 [pN:main,p:73244,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.msa:InfernalCM' +galaxy.datatypes.registry DEBUG 2024-02-23 13:08:02,212 [pN:main,p:73244,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.annotation:SnapHmm' +galaxy.datatypes.registry DEBUG 2024-02-23 13:08:02,212 [pN:main,p:73244,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.microarrays:Cel' +galaxy.datatypes.registry DEBUG 2024-02-23 13:08:02,212 [pN:main,p:73244,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.microarrays:Gpr' +galaxy.datatypes.registry DEBUG 2024-02-23 13:08:02,212 [pN:main,p:73244,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.microarrays:Gal' +galaxy.datatypes.registry DEBUG 2024-02-23 13:08:02,212 [pN:main,p:73244,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.binary:RData' +galaxy.datatypes.registry DEBUG 2024-02-23 13:08:02,212 [pN:main,p:73244,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.binary:RDS' +galaxy.datatypes.registry DEBUG 2024-02-23 13:08:02,212 [pN:main,p:73244,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.images:Mrc2014' +galaxy.datatypes.registry DEBUG 2024-02-23 13:08:02,212 [pN:main,p:73244,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.images:Jpg' +galaxy.datatypes.registry DEBUG 2024-02-23 13:08:02,212 [pN:main,p:73244,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.images:Png' +galaxy.datatypes.registry DEBUG 2024-02-23 13:08:02,213 [pN:main,p:73244,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.images:OMETiff' +galaxy.datatypes.registry DEBUG 2024-02-23 13:08:02,213 [pN:main,p:73244,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.images:Tiff' +galaxy.datatypes.registry DEBUG 2024-02-23 13:08:02,213 [pN:main,p:73244,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.images:Bmp' +galaxy.datatypes.registry DEBUG 2024-02-23 13:08:02,213 [pN:main,p:73244,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.images:Gif' +galaxy.datatypes.registry DEBUG 2024-02-23 13:08:02,213 [pN:main,p:73244,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.images:Im' +galaxy.datatypes.registry DEBUG 2024-02-23 13:08:02,213 [pN:main,p:73244,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.images:Pcd' +galaxy.datatypes.registry DEBUG 2024-02-23 13:08:02,213 [pN:main,p:73244,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.images:Pcx' +galaxy.datatypes.registry DEBUG 2024-02-23 13:08:02,213 [pN:main,p:73244,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.images:Ppm' +galaxy.datatypes.registry DEBUG 2024-02-23 13:08:02,213 [pN:main,p:73244,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.images:Psd' +galaxy.datatypes.registry DEBUG 2024-02-23 13:08:02,213 [pN:main,p:73244,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.images:Xbm' +galaxy.datatypes.registry DEBUG 2024-02-23 13:08:02,213 [pN:main,p:73244,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.images:Rgb' +galaxy.datatypes.registry DEBUG 2024-02-23 13:08:02,213 [pN:main,p:73244,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.images:Pbm' +galaxy.datatypes.registry DEBUG 2024-02-23 13:08:02,214 [pN:main,p:73244,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.images:Pgm' +galaxy.datatypes.registry DEBUG 2024-02-23 13:08:02,214 [pN:main,p:73244,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.images:Xpm' +galaxy.datatypes.registry DEBUG 2024-02-23 13:08:02,214 [pN:main,p:73244,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.images:Eps' +galaxy.datatypes.registry DEBUG 2024-02-23 13:08:02,214 [pN:main,p:73244,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.images:Rast' +galaxy.datatypes.registry DEBUG 2024-02-23 13:08:02,214 [pN:main,p:73244,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.images:Tck' +galaxy.datatypes.registry DEBUG 2024-02-23 13:08:02,214 [pN:main,p:73244,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.images:Trk' +galaxy.datatypes.registry DEBUG 2024-02-23 13:08:02,214 [pN:main,p:73244,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.images:Nifti1' +galaxy.datatypes.registry DEBUG 2024-02-23 13:08:02,214 [pN:main,p:73244,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.images:Nifti2' +galaxy.datatypes.registry DEBUG 2024-02-23 13:08:02,214 [pN:main,p:73244,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.images:Star' +galaxy.datatypes.registry DEBUG 2024-02-23 13:08:02,214 [pN:main,p:73244,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.media:Wav' +galaxy.datatypes.registry DEBUG 2024-02-23 13:08:02,214 [pN:main,p:73244,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.media:Mkv' +galaxy.datatypes.registry DEBUG 2024-02-23 13:08:02,214 [pN:main,p:73244,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.media:Mp3' +galaxy.datatypes.registry DEBUG 2024-02-23 13:08:02,215 [pN:main,p:73244,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.media:Mp4' +galaxy.datatypes.registry DEBUG 2024-02-23 13:08:02,215 [pN:main,p:73244,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.media:Flv' +galaxy.datatypes.registry DEBUG 2024-02-23 13:08:02,215 [pN:main,p:73244,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.media:Mpg' +galaxy.datatypes.registry DEBUG 2024-02-23 13:08:02,215 [pN:main,p:73244,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.speech:TextGrid' +galaxy.datatypes.registry DEBUG 2024-02-23 13:08:02,215 [pN:main,p:73244,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.speech:BPF' +galaxy.datatypes.registry DEBUG 2024-02-23 13:08:02,215 [pN:main,p:73244,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.larch:FEFFInput' +galaxy.datatypes.registry DEBUG 2024-02-23 13:08:02,215 [pN:main,p:73244,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.larch:AthenaProject' +galaxy.datatypes.registry DEBUG 2024-02-23 13:08:02,215 [pN:main,p:73244,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.text:Castep' +galaxy.datatypes.registry DEBUG 2024-02-23 13:08:02,215 [pN:main,p:73244,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.text:CTLresult' +galaxy.datatypes.registry DEBUG 2024-02-23 13:08:02,215 [pN:main,p:73244,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.text:FormattedDensity' +galaxy.datatypes.registry DEBUG 2024-02-23 13:08:02,215 [pN:main,p:73244,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.text:Param' +galaxy.datatypes.registry DEBUG 2024-02-23 13:08:02,215 [pN:main,p:73244,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.text:Yaml' +galaxy.datatypes.registry DEBUG 2024-02-23 13:08:02,216 [pN:main,p:73244,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.binary:OxliCountGraph' +galaxy.datatypes.registry DEBUG 2024-02-23 13:08:02,216 [pN:main,p:73244,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.binary:OxliNodeGraph' +galaxy.datatypes.registry DEBUG 2024-02-23 13:08:02,216 [pN:main,p:73244,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.binary:OxliTagSet' +galaxy.datatypes.registry DEBUG 2024-02-23 13:08:02,216 [pN:main,p:73244,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.binary:OxliStopTags' +galaxy.datatypes.registry DEBUG 2024-02-23 13:08:02,216 [pN:main,p:73244,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.binary:OxliSubset' +galaxy.datatypes.registry DEBUG 2024-02-23 13:08:02,216 [pN:main,p:73244,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.binary:OxliGraphLabels' +galaxy.datatypes.registry DEBUG 2024-02-23 13:08:02,216 [pN:main,p:73244,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.binary:FITS' +galaxy.datatypes.registry DEBUG 2024-02-23 13:08:02,216 [pN:main,p:73244,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.neo4j:Neo4jDBzip' +galaxy.datatypes.registry DEBUG 2024-02-23 13:08:02,216 [pN:main,p:73244,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.text:PithyaProperty' +galaxy.datatypes.registry DEBUG 2024-02-23 13:08:02,216 [pN:main,p:73244,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.text:PithyaModel' +galaxy.datatypes.registry DEBUG 2024-02-23 13:08:02,216 [pN:main,p:73244,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.text:BCSLmodel' +galaxy.datatypes.registry DEBUG 2024-02-23 13:08:02,216 [pN:main,p:73244,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.text:StormSample' +galaxy.datatypes.registry DEBUG 2024-02-23 13:08:02,217 [pN:main,p:73244,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.text:StormCheck' +galaxy.datatypes.registry DEBUG 2024-02-23 13:08:02,221 [pN:main,p:73244,tN:MainThread] Build site file [tool-data/shared/ucsc/ucsc_build_sites.txt] not found using sample [tool-data/shared/ucsc/ucsc_build_sites.txt.sample]. +galaxy.datatypes.registry DEBUG 2024-02-23 13:08:02,221 [pN:main,p:73244,tN:MainThread] Loaded build site 'ucsc': tool-data/shared/ucsc/ucsc_build_sites.txt.sample with display sites: ['main', 'test', 'archaea', 'ucla'] +galaxy.datatypes.registry DEBUG 2024-02-23 13:08:02,221 [pN:main,p:73244,tN:MainThread] Loaded build site 'gbrowse': tool-data/shared/gbrowse/gbrowse_build_sites.txt with display sites: ['modencode', 'sgd_yeast', 'tair', 'wormbase', 'wormbase_ws120', 'wormbase_ws140', 'wormbase_ws170', 'wormbase_ws180', 'wormbase_ws190', 'wormbase_ws200', 'wormbase_ws204', 'wormbase_ws210', 'wormbase_ws220', 'wormbase_ws225'] +galaxy.datatypes.registry DEBUG 2024-02-23 13:08:02,222 [pN:main,p:73244,tN:MainThread] Loaded build site 'ensembl': tool-data/shared/ensembl/ensembl_sites.txt +galaxy.datatypes.registry DEBUG 2024-02-23 13:08:02,222 [pN:main,p:73244,tN:MainThread] Loaded build site 'ensembl_data_url': tool-data/shared/ensembl/ensembl_sites_data_URL.txt +galaxy.datatypes.registry DEBUG 2024-02-23 13:08:02,222 [pN:main,p:73244,tN:MainThread] Build site file [tool-data/shared/igv/igv_build_sites.txt] not found using sample [tool-data/shared/igv/igv_build_sites.txt.sample]. +galaxy.datatypes.registry DEBUG 2024-02-23 13:08:02,222 [pN:main,p:73244,tN:MainThread] Loaded build site 'igv': tool-data/shared/igv/igv_build_sites.txt.sample +galaxy.datatypes.registry DEBUG 2024-02-23 13:08:02,222 [pN:main,p:73244,tN:MainThread] Build site file [tool-data/shared/rviewer/rviewer_build_sites.txt] not found using sample [tool-data/shared/rviewer/rviewer_build_sites.txt.sample]. +galaxy.datatypes.registry DEBUG 2024-02-23 13:08:02,222 [pN:main,p:73244,tN:MainThread] Loaded build site 'rviewer': tool-data/shared/rviewer/rviewer_build_sites.txt.sample +galaxy.util.tool_shed.tool_shed_registry DEBUG 2024-02-23 13:08:02,223 [pN:main,p:73244,tN:MainThread] Loading references to tool sheds from /tmp/tmpcb4g3qga/tool_sheds_conf.xml +galaxy.util.tool_shed.tool_shed_registry DEBUG 2024-02-23 13:08:02,223 [pN:main,p:73244,tN:MainThread] Loaded reference to tool shed: Target Shed +galaxy.queue_worker INFO 2024-02-23 13:08:02,223 [pN:main,p:73244,tN:MainThread] Initializing main Galaxy Queue Worker on sqlalchemy+sqlite:////tmp/tmpcb4g3qga/galaxy.sqlite?isolation_level=IMMEDIATE +galaxy.tool_util.data WARNING 2024-02-23 13:08:02,234 [pN:main,p:73244,tN:MainThread] Cannot find index file '/scratch/rico/galaxytools/tools/ncbi_fcs_adaptor/test-data/ncbi_fcs_adaptor_config.tsv' for tool data table 'ncbi_fcs_adaptor_config' +galaxy.tool_util.data DEBUG 2024-02-23 13:08:02,234 [pN:main,p:73244,tN:MainThread] Loaded tool data table 'ncbi_fcs_adaptor_config' from file '/scratch/rico/galaxytools/tools/ncbi_fcs_adaptor/tool_data_table_conf.xml.test' +galaxy.tool_util.data WARNING 2024-02-23 13:08:02,235 [pN:main,p:73244,tN:MainThread] Cannot find index file '/scratch/rico/galaxytools/tools/ncbi_fcs_adaptor/test-data/ncbi_fcs_adaptor_databases.loc' for tool data table 'ncbi_fcs_adaptor_databases' +galaxy.tool_util.data DEBUG 2024-02-23 13:08:02,235 [pN:main,p:73244,tN:MainThread] Loaded tool data table 'ncbi_fcs_adaptor_databases' from file '/scratch/rico/galaxytools/tools/ncbi_fcs_adaptor/tool_data_table_conf.xml.test' +galaxy.tool_util.data WARNING 2024-02-23 13:08:02,235 [pN:main,p:73244,tN:MainThread] Cannot find index file '/scratch/rico/galaxytools/tools/ncbi_fcs_adaptor/test-data/ncbi_fcs_adaptor_divisions.tsv' for tool data table 'ncbi_fcs_adaptor_divisions' +galaxy.tool_util.data DEBUG 2024-02-23 13:08:02,235 [pN:main,p:73244,tN:MainThread] Loaded tool data table 'ncbi_fcs_adaptor_divisions' from file '/scratch/rico/galaxytools/tools/ncbi_fcs_adaptor/tool_data_table_conf.xml.test' +galaxy.visualization.genomes ERROR 2024-02-23 13:08:02,240 [pN:main,p:73244,tN:MainThread] Error reading twobit.loc +Traceback (most recent call last): + File "/scratch/rico/galaxy/lib/galaxy/visualization/genomes.py", line 220, in reload_genomes + with open(twobit_path) as f: +FileNotFoundError: [Errno 2] No such file or directory: '/scratch/rico/galaxy/tool-data/twobit.loc' +galaxy.util WARNING 2024-02-23 13:08:02,478 [pN:main,p:73244,tN:MainThread] directory not found: /scratch/rico/galaxy/lib/galaxy/util/../../../config/plugins/activities +galaxy.tools WARNING 2024-02-23 13:08:02,479 [pN:main,p:73244,tN:MainThread] The default shed tool config file (/tmp/tmpcb4g3qga/shed_tool_conf.xml) has been added to the tool_config_file option, if this is not the desired behavior, please set shed_tool_config_file to your primary shed-enabled tool config file +galaxy.tool_util.toolbox.base INFO 2024-02-23 13:08:02,479 [pN:main,p:73244,tN:MainThread] Parsing the tool configuration /tmp/tmpcb4g3qga/tool_conf.xml +galaxy.tool_util.toolbox.base DEBUG 2024-02-23 13:08:02,479 [pN:main,p:73244,tN:MainThread] Tool path for tool configuration /tmp/tmpcb4g3qga/tool_conf.xml is None +galaxy.tool_util.toolbox.base DEBUG 2024-02-23 13:08:02,489 [pN:main,p:73244,tN:MainThread] Loaded tool id: upload1, version: 1.1.7 into tool panel.. +galaxy.tool_util.toolbox.base DEBUG 2024-02-23 13:08:02,492 [pN:main,p:73244,tN:MainThread] Loaded tool id: ncbi_fcs_adaptor, version: 0.5.0+galaxy0 into tool panel.. +galaxy.tools WARNING 2024-02-23 13:08:02,492 [pN:main,p:73244,tN:MainThread] The default shed tool config file (/tmp/tmpcb4g3qga/shed_tool_conf.xml) has been added to the tool_config_file option, if this is not the desired behavior, please set shed_tool_config_file to your primary shed-enabled tool config file +galaxy.tool_util.toolbox.base INFO 2024-02-23 13:08:02,492 [pN:main,p:73244,tN:MainThread] Parsing the tool configuration /tmp/tmpcb4g3qga/shed_tools_conf.xml +galaxy.tool_util.toolbox.base DEBUG 2024-02-23 13:08:02,492 [pN:main,p:73244,tN:MainThread] Tool path for shed tool configuration /tmp/tmpcb4g3qga/shed_tools_conf.xml is /tmp/tmpcb4g3qga/shed_tools +galaxy.tools WARNING 2024-02-23 13:08:02,492 [pN:main,p:73244,tN:MainThread] The default shed tool config file (/tmp/tmpcb4g3qga/shed_tool_conf.xml) has been added to the tool_config_file option, if this is not the desired behavior, please set shed_tool_config_file to your primary shed-enabled tool config file +galaxy.tool_util.toolbox.base INFO 2024-02-23 13:08:02,493 [pN:main,p:73244,tN:MainThread] Parsing the tool configuration /tmp/tmpcb4g3qga/empty_tool_conf.xml +galaxy.tool_util.toolbox.base DEBUG 2024-02-23 13:08:02,493 [pN:main,p:73244,tN:MainThread] Tool path for tool configuration /tmp/tmpcb4g3qga/empty_tool_conf.xml is None +galaxy.tool_util.toolbox.base DEBUG 2024-02-23 13:08:02,493 [pN:main,p:73244,tN:MainThread] Reading tools from config files finished (14.563 ms) +galaxy.tool_util.toolbox.base DEBUG 2024-02-23 13:08:02,495 [pN:main,p:73244,tN:MainThread] Loaded tool id: upload1, version: 1.1.7 into tool panel.. +galaxy.tool_util.toolbox.views.edam DEBUG 2024-02-23 13:08:02,495 [pN:main,p:73244,tN:MainThread] Loading EDAM tool panel finished (1.547 ms) +galaxy.tool_util.toolbox.base DEBUG 2024-02-23 13:08:02,496 [pN:main,p:73244,tN:MainThread] Loaded tool id: upload1, version: 1.1.7 into tool panel.. +galaxy.tool_util.toolbox.views.edam DEBUG 2024-02-23 13:08:02,496 [pN:main,p:73244,tN:MainThread] Loading EDAM tool panel finished (1.258 ms) +galaxy.tool_util.toolbox.integrated_panel DEBUG 2024-02-23 13:08:02,496 [pN:main,p:73244,tN:MainThread] Writing integrated tool panel config file to '/tmp/tmpcb4g3qga/integrated_tool_panel_conf.xml' +galaxy.util ERROR 2024-02-23 13:08:02,936 [pN:main,p:73244,tN:MainThread] Error parsing file /tmp/tmpcb4g3qga +Traceback (most recent call last): + File "/scratch/rico/galaxy/lib/galaxy/util/__init__.py", line 305, in parse_xml + tree = etree.parse(str(fname), parser=parser) + File "src/lxml/etree.pyx", line 3541, in lxml.etree.parse + File "src/lxml/parser.pxi", line 1879, in lxml.etree._parseDocument + File "src/lxml/parser.pxi", line 1905, in lxml.etree._parseDocumentFromURL + File "src/lxml/parser.pxi", line 1808, in lxml.etree._parseDocFromFile + File "src/lxml/parser.pxi", line 1180, in lxml.etree._BaseParser._parseDocFromFile + File "src/lxml/parser.pxi", line 618, in lxml.etree._ParserContext._handleParseResultDoc + File "src/lxml/parser.pxi", line 728, in lxml.etree._handleParseResult + File "src/lxml/parser.pxi", line 657, in lxml.etree._raiseParseError + File "/tmp/tmpcb4g3qga", line 1 +lxml.etree.XMLSyntaxError: Document is empty, line 1, column 1 +galaxy.tools.data_manager.manager ERROR 2024-02-23 13:08:02,937 [pN:main,p:73244,tN:MainThread] There was an error parsing your Data Manager config file "/tmp/tmpcb4g3qga": Document is empty, line 1, column 1 (tmpcb4g3qga, line 1) +galaxy.datatypes.registry DEBUG 2024-02-23 13:08:02,938 [pN:main,p:73244,tN:MainThread] Loaded display application 'ucsc_bam' for datatype 'bam', inherit=False. +galaxy.datatypes.registry DEBUG 2024-02-23 13:08:02,939 [pN:main,p:73244,tN:MainThread] Loaded display application 'ensembl_bam' for datatype 'bam', inherit=False. +galaxy.datatypes.display_applications.application ERROR 2024-02-23 13:08:02,939 [pN:main,p:73244,tN:MainThread] Error loading a set of Dynamic Display Application links: Unable to find data table named "igv_broad_genomes". +galaxy.datatypes.registry DEBUG 2024-02-23 13:08:02,941 [pN:main,p:73244,tN:MainThread] Loaded display application 'igv_bam' for datatype 'bam', inherit=False. +galaxy.datatypes.registry DEBUG 2024-02-23 13:08:02,941 [pN:main,p:73244,tN:MainThread] Loaded display application 'igb_bam' for datatype 'bam', inherit=False. +galaxy.datatypes.display_applications.application ERROR 2024-02-23 13:08:02,941 [pN:main,p:73244,tN:MainThread] Error loading a set of Dynamic Display Application links: Unable to find data table named "bam_iobio". +galaxy.datatypes.registry DEBUG 2024-02-23 13:08:02,941 [pN:main,p:73244,tN:MainThread] Loaded display application 'iobio_bam' for datatype 'bam', inherit=False. +galaxy.datatypes.registry DEBUG 2024-02-23 13:08:02,941 [pN:main,p:73244,tN:MainThread] Loaded display application 'igb_bed' for datatype 'bed', inherit=False. +galaxy.datatypes.registry DEBUG 2024-02-23 13:08:02,942 [pN:main,p:73244,tN:MainThread] Loaded display application 'igb_bedgraph' for datatype 'bedgraph', inherit=False. +galaxy.datatypes.registry DEBUG 2024-02-23 13:08:02,942 [pN:main,p:73244,tN:MainThread] Loaded display application 'ucsc_bigbed' for datatype 'bigbed', inherit=False. +galaxy.datatypes.registry DEBUG 2024-02-23 13:08:02,942 [pN:main,p:73244,tN:MainThread] Loaded display application 'igb_bb' for datatype 'bigbed', inherit=False. +galaxy.datatypes.registry DEBUG 2024-02-23 13:08:02,943 [pN:main,p:73244,tN:MainThread] Loaded display application 'ucsc_bigwig' for datatype 'bigwig', inherit=False. +galaxy.datatypes.registry DEBUG 2024-02-23 13:08:02,943 [pN:main,p:73244,tN:MainThread] Loaded display application 'igb_bigwig' for datatype 'bigwig', inherit=False. +galaxy.datatypes.registry DEBUG 2024-02-23 13:08:02,944 [pN:main,p:73244,tN:MainThread] Loaded display application 'igv_bigwig' for datatype 'bigwig', inherit=False. +galaxy.datatypes.display_applications.application ERROR 2024-02-23 13:08:02,944 [pN:main,p:73244,tN:MainThread] Error loading a set of Dynamic Display Application links: Unable to find data table named "intermine_simple_display". +galaxy.datatypes.registry DEBUG 2024-02-23 13:08:02,944 [pN:main,p:73244,tN:MainThread] Loaded display application 'intermine_simple' for datatype 'intermine_tabular', inherit=False. +galaxy.datatypes.display_applications.application ERROR 2024-02-23 13:08:02,945 [pN:main,p:73244,tN:MainThread] Error loading a set of Dynamic Display Application links: Unable to find data table named "igv_broad_genomes". +galaxy.datatypes.registry DEBUG 2024-02-23 13:08:02,945 [pN:main,p:73244,tN:MainThread] Loaded display application 'igv_fasta' for datatype 'fasta', inherit=True. +galaxy.datatypes.registry DEBUG 2024-02-23 13:08:02,946 [pN:main,p:73244,tN:MainThread] Loaded display application 'ensembl_gff' for datatype 'gff', inherit=True. +galaxy.datatypes.display_applications.application ERROR 2024-02-23 13:08:02,947 [pN:main,p:73244,tN:MainThread] Error loading a set of Dynamic Display Application links: Unable to find data table named "igv_broad_genomes". +galaxy.datatypes.registry DEBUG 2024-02-23 13:08:02,947 [pN:main,p:73244,tN:MainThread] Loaded display application 'igv_gff' for datatype 'gff', inherit=True. +galaxy.datatypes.registry DEBUG 2024-02-23 13:08:02,947 [pN:main,p:73244,tN:MainThread] Loaded display application 'igb_gtf' for datatype 'gtf', inherit=False. +galaxy.datatypes.registry DEBUG 2024-02-23 13:08:02,948 [pN:main,p:73244,tN:MainThread] Loaded display application 'ensembl_interval' for datatype 'interval', inherit=True. +galaxy.datatypes.registry DEBUG 2024-02-23 13:08:02,949 [pN:main,p:73244,tN:MainThread] Loaded display application 'gbrowse_interval_as_bed' for datatype 'interval', inherit=True. +galaxy.datatypes.registry DEBUG 2024-02-23 13:08:02,949 [pN:main,p:73244,tN:MainThread] Loaded display application 'rviewer_interval' for datatype 'interval', inherit=True. +galaxy.datatypes.display_applications.application ERROR 2024-02-23 13:08:02,950 [pN:main,p:73244,tN:MainThread] Error loading a set of Dynamic Display Application links: Unable to find data table named "igv_broad_genomes". +galaxy.datatypes.registry DEBUG 2024-02-23 13:08:02,950 [pN:main,p:73244,tN:MainThread] Loaded display application 'igv_interval_as_bed' for datatype 'interval', inherit=True. +galaxy.datatypes.registry DEBUG 2024-02-23 13:08:02,950 [pN:main,p:73244,tN:MainThread] Loaded display application 'avivator' for datatype 'ome.tiff', inherit=False. +galaxy.datatypes.display_applications.application ERROR 2024-02-23 13:08:02,950 [pN:main,p:73244,tN:MainThread] Error loading a set of Dynamic Display Application links: Unable to find data table named "q2view_display". +galaxy.datatypes.registry DEBUG 2024-02-23 13:08:02,951 [pN:main,p:73244,tN:MainThread] Loaded display application 'q2view' for datatype 'qza', inherit=False. +galaxy.datatypes.display_applications.application ERROR 2024-02-23 13:08:02,951 [pN:main,p:73244,tN:MainThread] Error loading a set of Dynamic Display Application links: Unable to find data table named "q2view_display". +galaxy.datatypes.registry DEBUG 2024-02-23 13:08:02,951 [pN:main,p:73244,tN:MainThread] Loaded display application 'q2view' for datatype 'qzv', inherit=False. +galaxy.datatypes.registry DEBUG 2024-02-23 13:08:02,951 [pN:main,p:73244,tN:MainThread] Loaded display application 'ucsc_maf_customtrack' for datatype 'mafcustomtrack', inherit=False. +galaxy.datatypes.registry DEBUG 2024-02-23 13:08:02,952 [pN:main,p:73244,tN:MainThread] Loaded display application 'minerva_tabular' for datatype 'tabular', inherit=False. +galaxy.datatypes.registry DEBUG 2024-02-23 13:08:02,952 [pN:main,p:73244,tN:MainThread] Loaded display application 'ucsc_vcf' for datatype 'vcf', inherit=False. +galaxy.datatypes.display_applications.application ERROR 2024-02-23 13:08:02,953 [pN:main,p:73244,tN:MainThread] Error loading a set of Dynamic Display Application links: Unable to find data table named "igv_broad_genomes". +galaxy.datatypes.registry DEBUG 2024-02-23 13:08:02,953 [pN:main,p:73244,tN:MainThread] Loaded display application 'igv_vcf' for datatype 'vcf', inherit=False. +galaxy.datatypes.registry DEBUG 2024-02-23 13:08:02,953 [pN:main,p:73244,tN:MainThread] Loaded display application 'rviewer_vcf' for datatype 'vcf', inherit=True. +galaxy.datatypes.display_applications.application ERROR 2024-02-23 13:08:02,953 [pN:main,p:73244,tN:MainThread] Error loading a set of Dynamic Display Application links: Unable to find data table named "vcf_iobio". +galaxy.datatypes.registry DEBUG 2024-02-23 13:08:02,954 [pN:main,p:73244,tN:MainThread] Loaded display application 'iobio_vcf' for datatype 'vcf', inherit=False. +galaxy.datatypes.registry DEBUG 2024-02-23 13:08:02,954 [pN:main,p:73244,tN:MainThread] Loaded display application 'igb_wig' for datatype 'wig', inherit=False. +galaxy.datatypes.display_applications.application ERROR 2024-02-23 13:08:02,954 [pN:main,p:73244,tN:MainThread] Error loading a set of Dynamic Display Application links: Unable to find data table named "igv_broad_genomes". +galaxy.datatypes.registry DEBUG 2024-02-23 13:08:02,954 [pN:main,p:73244,tN:MainThread] Loaded display application 'igv_vcf' for datatype 'vcf_bgzip', inherit=False. +galaxy.datatypes.display_applications.application ERROR 2024-02-23 13:08:02,955 [pN:main,p:73244,tN:MainThread] Error loading a set of Dynamic Display Application links: Unable to find data table named "igv_broad_genomes". +galaxy.datatypes.registry DEBUG 2024-02-23 13:08:02,955 [pN:main,p:73244,tN:MainThread] Loaded display application 'igv_genbank' for datatype 'genbank', inherit=False. +galaxy.datatypes.display_applications.application ERROR 2024-02-23 13:08:02,955 [pN:main,p:73244,tN:MainThread] Error loading a set of Dynamic Display Application links: Unable to find data table named "biom_simple_display". +galaxy.datatypes.registry DEBUG 2024-02-23 13:08:02,955 [pN:main,p:73244,tN:MainThread] Loaded display application 'biom_simple' for datatype 'biom1', inherit=False. +galaxy.datatypes.display_applications.application ERROR 2024-02-23 13:08:02,955 [pN:main,p:73244,tN:MainThread] Error loading a set of Dynamic Display Application links: Unable to find data table named "icn3d_simple_display". +galaxy.datatypes.registry DEBUG 2024-02-23 13:08:02,956 [pN:main,p:73244,tN:MainThread] Loaded display application 'icn3d_simple' for datatype 'sdf', inherit=False. +galaxy.datatypes.display_applications.application ERROR 2024-02-23 13:08:02,956 [pN:main,p:73244,tN:MainThread] Error loading a set of Dynamic Display Application links: Unable to find data table named "icn3d_simple_display". +galaxy.datatypes.registry DEBUG 2024-02-23 13:08:02,956 [pN:main,p:73244,tN:MainThread] Loaded display application 'icn3d_simple' for datatype 'mol2', inherit=False. +galaxy.datatypes.display_applications.application ERROR 2024-02-23 13:08:02,956 [pN:main,p:73244,tN:MainThread] Error loading a set of Dynamic Display Application links: Unable to find data table named "icn3d_simple_display". +galaxy.datatypes.registry DEBUG 2024-02-23 13:08:02,956 [pN:main,p:73244,tN:MainThread] Loaded display application 'icn3d_simple' for datatype 'pdb', inherit=False. +galaxy.datatypes.registry DEBUG 2024-02-23 13:08:02,956 [pN:main,p:73244,tN:MainThread] Loaded display application 'ucsc_trackhub' for datatype 'trackhub', inherit=False. +galaxy.datatypes.registry DEBUG 2024-02-23 13:08:02,956 [pN:main,p:73244,tN:MainThread] Adding inherited display application 'ensembl_interval' to datatype 'bed' +galaxy.datatypes.registry DEBUG 2024-02-23 13:08:02,956 [pN:main,p:73244,tN:MainThread] Adding inherited display application 'gbrowse_interval_as_bed' to datatype 'bed' +galaxy.datatypes.registry DEBUG 2024-02-23 13:08:02,957 [pN:main,p:73244,tN:MainThread] Adding inherited display application 'rviewer_interval' to datatype 'bed' +galaxy.datatypes.registry DEBUG 2024-02-23 13:08:02,957 [pN:main,p:73244,tN:MainThread] Adding inherited display application 'igv_interval_as_bed' to datatype 'bed' +galaxy.datatypes.registry DEBUG 2024-02-23 13:08:02,957 [pN:main,p:73244,tN:MainThread] Adding inherited display application 'ensembl_interval' to datatype 'bedgraph' +galaxy.datatypes.registry DEBUG 2024-02-23 13:08:02,957 [pN:main,p:73244,tN:MainThread] Adding inherited display application 'gbrowse_interval_as_bed' to datatype 'bedgraph' +galaxy.datatypes.registry DEBUG 2024-02-23 13:08:02,957 [pN:main,p:73244,tN:MainThread] Adding inherited display application 'rviewer_interval' to datatype 'bedgraph' +galaxy.datatypes.registry DEBUG 2024-02-23 13:08:02,957 [pN:main,p:73244,tN:MainThread] Adding inherited display application 'igv_interval_as_bed' to datatype 'bedgraph' +galaxy.datatypes.registry DEBUG 2024-02-23 13:08:02,957 [pN:main,p:73244,tN:MainThread] Adding inherited display application 'ensembl_interval' to datatype 'bedstrict' +galaxy.datatypes.registry DEBUG 2024-02-23 13:08:02,957 [pN:main,p:73244,tN:MainThread] Adding inherited display application 'gbrowse_interval_as_bed' to datatype 'bedstrict' +galaxy.datatypes.registry DEBUG 2024-02-23 13:08:02,957 [pN:main,p:73244,tN:MainThread] Adding inherited display application 'rviewer_interval' to datatype 'bedstrict' +galaxy.datatypes.registry DEBUG 2024-02-23 13:08:02,957 [pN:main,p:73244,tN:MainThread] Adding inherited display application 'igv_interval_as_bed' to datatype 'bedstrict' +galaxy.datatypes.registry DEBUG 2024-02-23 13:08:02,957 [pN:main,p:73244,tN:MainThread] Adding inherited display application 'ensembl_interval' to datatype 'bed6' +galaxy.datatypes.registry DEBUG 2024-02-23 13:08:02,957 [pN:main,p:73244,tN:MainThread] Adding inherited display application 'gbrowse_interval_as_bed' to datatype 'bed6' +galaxy.datatypes.registry DEBUG 2024-02-23 13:08:02,957 [pN:main,p:73244,tN:MainThread] Adding inherited display application 'rviewer_interval' to datatype 'bed6' +galaxy.datatypes.registry DEBUG 2024-02-23 13:08:02,957 [pN:main,p:73244,tN:MainThread] Adding inherited display application 'igv_interval_as_bed' to datatype 'bed6' +galaxy.datatypes.registry DEBUG 2024-02-23 13:08:02,957 [pN:main,p:73244,tN:MainThread] Adding inherited display application 'ensembl_interval' to datatype 'bed12' +galaxy.datatypes.registry DEBUG 2024-02-23 13:08:02,957 [pN:main,p:73244,tN:MainThread] Adding inherited display application 'gbrowse_interval_as_bed' to datatype 'bed12' +galaxy.datatypes.registry DEBUG 2024-02-23 13:08:02,957 [pN:main,p:73244,tN:MainThread] Adding inherited display application 'rviewer_interval' to datatype 'bed12' +galaxy.datatypes.registry DEBUG 2024-02-23 13:08:02,957 [pN:main,p:73244,tN:MainThread] Adding inherited display application 'igv_interval_as_bed' to datatype 'bed12' +galaxy.datatypes.registry DEBUG 2024-02-23 13:08:02,957 [pN:main,p:73244,tN:MainThread] Adding inherited display application 'ensembl_interval' to datatype 'probed' +galaxy.datatypes.registry DEBUG 2024-02-23 13:08:02,957 [pN:main,p:73244,tN:MainThread] Adding inherited display application 'gbrowse_interval_as_bed' to datatype 'probed' +galaxy.datatypes.registry DEBUG 2024-02-23 13:08:02,957 [pN:main,p:73244,tN:MainThread] Adding inherited display application 'rviewer_interval' to datatype 'probed' +galaxy.datatypes.registry DEBUG 2024-02-23 13:08:02,957 [pN:main,p:73244,tN:MainThread] Adding inherited display application 'igv_interval_as_bed' to datatype 'probed' +galaxy.datatypes.registry DEBUG 2024-02-23 13:08:02,958 [pN:main,p:73244,tN:MainThread] Adding inherited display application 'ensembl_interval' to datatype 'chrint' +galaxy.datatypes.registry DEBUG 2024-02-23 13:08:02,958 [pN:main,p:73244,tN:MainThread] Adding inherited display application 'gbrowse_interval_as_bed' to datatype 'chrint' +galaxy.datatypes.registry DEBUG 2024-02-23 13:08:02,958 [pN:main,p:73244,tN:MainThread] Adding inherited display application 'rviewer_interval' to datatype 'chrint' +galaxy.datatypes.registry DEBUG 2024-02-23 13:08:02,958 [pN:main,p:73244,tN:MainThread] Adding inherited display application 'igv_interval_as_bed' to datatype 'chrint' +galaxy.datatypes.registry DEBUG 2024-02-23 13:08:02,958 [pN:main,p:73244,tN:MainThread] Adding inherited display application 'igv_fasta' to datatype 'fasta.gz' +galaxy.datatypes.registry DEBUG 2024-02-23 13:08:02,958 [pN:main,p:73244,tN:MainThread] Adding inherited display application 'ensembl_gff' to datatype 'gff3' +galaxy.datatypes.registry DEBUG 2024-02-23 13:08:02,958 [pN:main,p:73244,tN:MainThread] Adding inherited display application 'igv_gff' to datatype 'gff3' +galaxy.datatypes.registry DEBUG 2024-02-23 13:08:02,958 [pN:main,p:73244,tN:MainThread] Adding inherited display application 'ensembl_gff' to datatype 'gff3.gz' +galaxy.datatypes.registry DEBUG 2024-02-23 13:08:02,958 [pN:main,p:73244,tN:MainThread] Adding inherited display application 'igv_gff' to datatype 'gff3.gz' +galaxy.datatypes.registry DEBUG 2024-02-23 13:08:02,958 [pN:main,p:73244,tN:MainThread] Adding inherited display application 'ensembl_gff' to datatype 'gff3.bz2' +galaxy.datatypes.registry DEBUG 2024-02-23 13:08:02,958 [pN:main,p:73244,tN:MainThread] Adding inherited display application 'igv_gff' to datatype 'gff3.bz2' +galaxy.datatypes.registry DEBUG 2024-02-23 13:08:02,958 [pN:main,p:73244,tN:MainThread] Adding inherited display application 'ensembl_gff' to datatype 'gtf' +galaxy.datatypes.registry DEBUG 2024-02-23 13:08:02,958 [pN:main,p:73244,tN:MainThread] Adding inherited display application 'igv_gff' to datatype 'gtf' +galaxy.datatypes.registry DEBUG 2024-02-23 13:08:02,959 [pN:main,p:73244,tN:MainThread] Adding inherited display application 'ensembl_interval' to datatype 'encodepeak' +galaxy.datatypes.registry DEBUG 2024-02-23 13:08:02,959 [pN:main,p:73244,tN:MainThread] Adding inherited display application 'gbrowse_interval_as_bed' to datatype 'encodepeak' +galaxy.datatypes.registry DEBUG 2024-02-23 13:08:02,959 [pN:main,p:73244,tN:MainThread] Adding inherited display application 'rviewer_interval' to datatype 'encodepeak' +galaxy.datatypes.registry DEBUG 2024-02-23 13:08:02,959 [pN:main,p:73244,tN:MainThread] Adding inherited display application 'igv_interval_as_bed' to datatype 'encodepeak' +galaxy.datatypes.registry DEBUG 2024-02-23 13:08:02,960 [pN:main,p:73244,tN:MainThread] Adding inherited display application 'igv_fasta' to datatype 'sequences' +galaxy.datatypes.registry DEBUG 2024-02-23 13:08:02,960 [pN:main,p:73244,tN:MainThread] Adding inherited display application 'ensembl_interval' to datatype 'interval_tabix.gz' +galaxy.datatypes.registry DEBUG 2024-02-23 13:08:02,960 [pN:main,p:73244,tN:MainThread] Adding inherited display application 'gbrowse_interval_as_bed' to datatype 'interval_tabix.gz' +galaxy.datatypes.registry DEBUG 2024-02-23 13:08:02,960 [pN:main,p:73244,tN:MainThread] Adding inherited display application 'rviewer_interval' to datatype 'interval_tabix.gz' +galaxy.datatypes.registry DEBUG 2024-02-23 13:08:02,960 [pN:main,p:73244,tN:MainThread] Adding inherited display application 'igv_interval_as_bed' to datatype 'interval_tabix.gz' +galaxy.datatypes.registry DEBUG 2024-02-23 13:08:02,960 [pN:main,p:73244,tN:MainThread] Adding inherited display application 'ensembl_interval' to datatype 'juicer_medium_tabix.gz' +galaxy.datatypes.registry DEBUG 2024-02-23 13:08:02,960 [pN:main,p:73244,tN:MainThread] Adding inherited display application 'gbrowse_interval_as_bed' to datatype 'juicer_medium_tabix.gz' +galaxy.datatypes.registry DEBUG 2024-02-23 13:08:02,960 [pN:main,p:73244,tN:MainThread] Adding inherited display application 'rviewer_interval' to datatype 'juicer_medium_tabix.gz' +galaxy.datatypes.registry DEBUG 2024-02-23 13:08:02,960 [pN:main,p:73244,tN:MainThread] Adding inherited display application 'igv_interval_as_bed' to datatype 'juicer_medium_tabix.gz' +galaxy.datatypes.registry DEBUG 2024-02-23 13:08:02,960 [pN:main,p:73244,tN:MainThread] Adding inherited display application 'ensembl_interval' to datatype 'bed_tabix.gz' +galaxy.datatypes.registry DEBUG 2024-02-23 13:08:02,960 [pN:main,p:73244,tN:MainThread] Adding inherited display application 'gbrowse_interval_as_bed' to datatype 'bed_tabix.gz' +galaxy.datatypes.registry DEBUG 2024-02-23 13:08:02,960 [pN:main,p:73244,tN:MainThread] Adding inherited display application 'rviewer_interval' to datatype 'bed_tabix.gz' +galaxy.datatypes.registry DEBUG 2024-02-23 13:08:02,960 [pN:main,p:73244,tN:MainThread] Adding inherited display application 'igv_interval_as_bed' to datatype 'bed_tabix.gz' +galaxy.datatypes.registry DEBUG 2024-02-23 13:08:02,960 [pN:main,p:73244,tN:MainThread] Adding inherited display application 'ensembl_interval' to datatype 'gff_tabix.gz' +galaxy.datatypes.registry DEBUG 2024-02-23 13:08:02,960 [pN:main,p:73244,tN:MainThread] Adding inherited display application 'gbrowse_interval_as_bed' to datatype 'gff_tabix.gz' +galaxy.datatypes.registry DEBUG 2024-02-23 13:08:02,960 [pN:main,p:73244,tN:MainThread] Adding inherited display application 'rviewer_interval' to datatype 'gff_tabix.gz' +galaxy.datatypes.registry DEBUG 2024-02-23 13:08:02,960 [pN:main,p:73244,tN:MainThread] Adding inherited display application 'igv_interval_as_bed' to datatype 'gff_tabix.gz' +galaxy.datatypes.registry DEBUG 2024-02-23 13:08:02,962 [pN:main,p:73244,tN:MainThread] Adding inherited display application 'igv_fasta' to datatype 'mothur.align' +galaxy.datatypes.registry DEBUG 2024-02-23 13:08:02,964 [pN:main,p:73244,tN:MainThread] Loaded converter: CONVERTER_uncompressed_to_gz +galaxy.datatypes.registry DEBUG 2024-02-23 13:08:02,965 [pN:main,p:73244,tN:MainThread] Loaded converter: CONVERTER_gz_to_uncompressed +galaxy.datatypes.registry DEBUG 2024-02-23 13:08:02,967 [pN:main,p:73244,tN:MainThread] Loaded converter: CONVERTER_uncompressed_to_gz +galaxy.datatypes.registry DEBUG 2024-02-23 13:08:02,968 [pN:main,p:73244,tN:MainThread] Loaded converter: CONVERTER_gz_to_uncompressed +galaxy.datatypes.registry DEBUG 2024-02-23 13:08:02,970 [pN:main,p:73244,tN:MainThread] Loaded converter: CONVERTER_uncompressed_to_gz +galaxy.datatypes.registry DEBUG 2024-02-23 13:08:02,971 [pN:main,p:73244,tN:MainThread] Loaded converter: CONVERTER_gz_to_uncompressed +galaxy.datatypes.registry DEBUG 2024-02-23 13:08:02,972 [pN:main,p:73244,tN:MainThread] Loaded converter: CONVERTER_Bam_Bai_0 +galaxy.datatypes.registry DEBUG 2024-02-23 13:08:02,973 [pN:main,p:73244,tN:MainThread] Loaded converter: CONVERTER_bam_to_bigwig_0 +galaxy.datatypes.registry DEBUG 2024-02-23 13:08:02,974 [pN:main,p:73244,tN:MainThread] Loaded converter: CONVERTER_bam_to_qname_sorted_bam +galaxy.datatypes.registry DEBUG 2024-02-23 13:08:02,975 [pN:main,p:73244,tN:MainThread] Loaded converter: CONVERTER_bam_to_bigwig_0 +galaxy.datatypes.registry DEBUG 2024-02-23 13:08:02,976 [pN:main,p:73244,tN:MainThread] Loaded converter: CONVERTER_bam_to_coodinate_sorted_bam +galaxy.datatypes.registry DEBUG 2024-02-23 13:08:02,977 [pN:main,p:73244,tN:MainThread] Loaded converter: CONVERTER_bam_to_qname_sorted_bam +galaxy.datatypes.registry DEBUG 2024-02-23 13:08:02,978 [pN:main,p:73244,tN:MainThread] Loaded converter: CONVERTER_cram_to_bam_0 +galaxy.datatypes.registry DEBUG 2024-02-23 13:08:02,979 [pN:main,p:73244,tN:MainThread] Loaded converter: CONVERTER_bed_to_gff_0 +galaxy.datatypes.registry DEBUG 2024-02-23 13:08:02,981 [pN:main,p:73244,tN:MainThread] Loaded converter: CONVERTER_interval_to_bgzip_0 +galaxy.datatypes.registry DEBUG 2024-02-23 13:08:02,983 [pN:main,p:73244,tN:MainThread] Loaded converter: CONVERTER_interval_to_tabix_0 +galaxy.datatypes.registry DEBUG 2024-02-23 13:08:02,984 [pN:main,p:73244,tN:MainThread] Loaded converter: CONVERTER_bed_gff_or_vcf_to_bigwig_0 +galaxy.datatypes.registry DEBUG 2024-02-23 13:08:02,985 [pN:main,p:73244,tN:MainThread] Loaded converter: CONVERTER_bed_to_fli_0 +galaxy.datatypes.registry DEBUG 2024-02-23 13:08:02,986 [pN:main,p:73244,tN:MainThread] Loaded converter: CONVERTER_bedgraph_to_bigwig +galaxy.datatypes.registry DEBUG 2024-02-23 13:08:02,987 [pN:main,p:73244,tN:MainThread] Loaded converter: CONVERTER_len_to_linecount +galaxy.datatypes.registry DEBUG 2024-02-23 13:08:02,988 [pN:main,p:73244,tN:MainThread] Loaded converter: CONVERTER_parquet_to_csv +galaxy.datatypes.registry DEBUG 2024-02-23 13:08:02,990 [pN:main,p:73244,tN:MainThread] Loaded converter: bigwigtowig +galaxy.datatypes.registry DEBUG 2024-02-23 13:08:02,993 [pN:main,p:73244,tN:MainThread] Loaded converter: CONVERTER_interval_to_bgzip_0 +galaxy.datatypes.registry DEBUG 2024-02-23 13:08:02,995 [pN:main,p:73244,tN:MainThread] Loaded converter: CONVERTER_interval_to_tabix_0 +galaxy.datatypes.registry DEBUG 2024-02-23 13:08:02,996 [pN:main,p:73244,tN:MainThread] Loaded converter: CONVERTER_bed_gff_or_vcf_to_bigwig_0 +galaxy.datatypes.registry DEBUG 2024-02-23 13:08:02,997 [pN:main,p:73244,tN:MainThread] Loaded converter: csv_to_tabular +galaxy.datatypes.registry DEBUG 2024-02-23 13:08:02,998 [pN:main,p:73244,tN:MainThread] Loaded converter: tabular_to_csv +galaxy.datatypes.registry DEBUG 2024-02-23 13:08:02,999 [pN:main,p:73244,tN:MainThread] Loaded converter: CONVERTER_fasta_to_tabular +galaxy.datatypes.registry DEBUG 2024-02-23 13:08:03,000 [pN:main,p:73244,tN:MainThread] Loaded converter: CONVERTER_fasta_to_bowtie_base_index +galaxy.datatypes.registry DEBUG 2024-02-23 13:08:03,001 [pN:main,p:73244,tN:MainThread] Loaded converter: CONVERTER_fasta_to_bowtie_color_index +galaxy.datatypes.registry DEBUG 2024-02-23 13:08:03,002 [pN:main,p:73244,tN:MainThread] Loaded converter: CONVERTER_fasta_to_2bit +galaxy.datatypes.registry DEBUG 2024-02-23 13:08:03,003 [pN:main,p:73244,tN:MainThread] Loaded converter: CONVERTER_fasta_to_len +galaxy.datatypes.registry DEBUG 2024-02-23 13:08:03,004 [pN:main,p:73244,tN:MainThread] Loaded converter: CONVERTER_fasta_to_fai +galaxy.datatypes.registry DEBUG 2024-02-23 13:08:03,005 [pN:main,p:73244,tN:MainThread] Loaded converter: CONVERTER_uncompressed_to_gz +galaxy.datatypes.registry DEBUG 2024-02-23 13:08:03,006 [pN:main,p:73244,tN:MainThread] Loaded converter: CONVERTER_gz_to_uncompressed +galaxy.datatypes.registry DEBUG 2024-02-23 13:08:03,007 [pN:main,p:73244,tN:MainThread] Loaded converter: CONVERTER_fastq_to_fqtoc0 +galaxy.datatypes.registry DEBUG 2024-02-23 13:08:03,009 [pN:main,p:73244,tN:MainThread] Loaded converter: CONVERTER_uncompressed_to_gz +galaxy.datatypes.registry DEBUG 2024-02-23 13:08:03,010 [pN:main,p:73244,tN:MainThread] Loaded converter: CONVERTER_gz_to_uncompressed +galaxy.datatypes.registry DEBUG 2024-02-23 13:08:03,011 [pN:main,p:73244,tN:MainThread] Loaded converter: CONVERTER_bz2_to_uncompressed +galaxy.datatypes.registry DEBUG 2024-02-23 13:08:03,012 [pN:main,p:73244,tN:MainThread] Loaded converter: CONVERTER_fastq_to_fqtoc0 +galaxy.datatypes.registry DEBUG 2024-02-23 13:08:03,014 [pN:main,p:73244,tN:MainThread] Loaded converter: CONVERTER_uncompressed_to_gz +galaxy.datatypes.registry DEBUG 2024-02-23 13:08:03,015 [pN:main,p:73244,tN:MainThread] Loaded converter: CONVERTER_gz_to_uncompressed +galaxy.datatypes.registry DEBUG 2024-02-23 13:08:03,016 [pN:main,p:73244,tN:MainThread] Loaded converter: CONVERTER_bz2_to_uncompressed +galaxy.datatypes.registry DEBUG 2024-02-23 13:08:03,017 [pN:main,p:73244,tN:MainThread] Loaded converter: CONVERTER_fastq_to_fqtoc0 +galaxy.datatypes.registry DEBUG 2024-02-23 13:08:03,019 [pN:main,p:73244,tN:MainThread] Loaded converter: CONVERTER_uncompressed_to_gz +galaxy.datatypes.registry DEBUG 2024-02-23 13:08:03,020 [pN:main,p:73244,tN:MainThread] Loaded converter: CONVERTER_gz_to_uncompressed +galaxy.datatypes.registry DEBUG 2024-02-23 13:08:03,021 [pN:main,p:73244,tN:MainThread] Loaded converter: CONVERTER_bz2_to_uncompressed +galaxy.datatypes.registry DEBUG 2024-02-23 13:08:03,022 [pN:main,p:73244,tN:MainThread] Loaded converter: CONVERTER_fastq_to_fqtoc0 +galaxy.datatypes.registry DEBUG 2024-02-23 13:08:03,023 [pN:main,p:73244,tN:MainThread] Loaded converter: CONVERTER_uncompressed_to_gz +galaxy.datatypes.registry DEBUG 2024-02-23 13:08:03,025 [pN:main,p:73244,tN:MainThread] Loaded converter: CONVERTER_gz_to_uncompressed +galaxy.datatypes.registry DEBUG 2024-02-23 13:08:03,026 [pN:main,p:73244,tN:MainThread] Loaded converter: CONVERTER_bz2_to_uncompressed +galaxy.datatypes.registry DEBUG 2024-02-23 13:08:03,027 [pN:main,p:73244,tN:MainThread] Loaded converter: CONVERTER_fastq_to_fqtoc0 +galaxy.datatypes.registry DEBUG 2024-02-23 13:08:03,029 [pN:main,p:73244,tN:MainThread] Loaded converter: CONVERTER_uncompressed_to_gz +galaxy.datatypes.registry DEBUG 2024-02-23 13:08:03,030 [pN:main,p:73244,tN:MainThread] Loaded converter: CONVERTER_gz_to_uncompressed +galaxy.datatypes.registry DEBUG 2024-02-23 13:08:03,031 [pN:main,p:73244,tN:MainThread] Loaded converter: CONVERTER_bz2_to_uncompressed +galaxy.datatypes.registry DEBUG 2024-02-23 13:08:03,032 [pN:main,p:73244,tN:MainThread] Loaded converter: CONVERTER_gff_to_bed_0 +galaxy.datatypes.registry DEBUG 2024-02-23 13:08:03,033 [pN:main,p:73244,tN:MainThread] Loaded converter: CONVERTER_gff_to_interval_index_0 +galaxy.datatypes.registry DEBUG 2024-02-23 13:08:03,034 [pN:main,p:73244,tN:MainThread] Loaded converter: CONVERTER_bed_gff_or_vcf_to_bigwig_0 +galaxy.datatypes.registry DEBUG 2024-02-23 13:08:03,035 [pN:main,p:73244,tN:MainThread] Loaded converter: CONVERTER_gff_to_fli_0 +galaxy.datatypes.registry DEBUG 2024-02-23 13:08:03,038 [pN:main,p:73244,tN:MainThread] Loaded converter: CONVERTER_interval_to_bgzip_0 +galaxy.datatypes.registry DEBUG 2024-02-23 13:08:03,040 [pN:main,p:73244,tN:MainThread] Loaded converter: CONVERTER_interval_to_tabix_0 +galaxy.datatypes.registry DEBUG 2024-02-23 13:08:03,041 [pN:main,p:73244,tN:MainThread] Loaded converter: CONVERTER_uncompressed_to_gz +galaxy.datatypes.registry DEBUG 2024-02-23 13:08:03,042 [pN:main,p:73244,tN:MainThread] Loaded converter: CONVERTER_gz_to_uncompressed +galaxy.datatypes.registry DEBUG 2024-02-23 13:08:03,043 [pN:main,p:73244,tN:MainThread] Loaded converter: CONVERTER_bz2_to_uncompressed +galaxy.datatypes.registry DEBUG 2024-02-23 13:08:03,044 [pN:main,p:73244,tN:MainThread] Loaded converter: CONVERTER_gff_to_interval_index_0 +galaxy.datatypes.registry DEBUG 2024-02-23 13:08:03,046 [pN:main,p:73244,tN:MainThread] Loaded converter: CONVERTER_bed_gff_or_vcf_to_bigwig_0 +galaxy.datatypes.registry DEBUG 2024-02-23 13:08:03,047 [pN:main,p:73244,tN:MainThread] Loaded converter: CONVERTER_interval_to_bed_0 +galaxy.datatypes.registry DEBUG 2024-02-23 13:08:03,048 [pN:main,p:73244,tN:MainThread] Loaded converter: CONVERTER_interval_to_bedstrict_0 +galaxy.datatypes.registry DEBUG 2024-02-23 13:08:03,049 [pN:main,p:73244,tN:MainThread] Loaded converter: CONVERTER_interval_to_bed6_0 +galaxy.datatypes.registry DEBUG 2024-02-23 13:08:03,052 [pN:main,p:73244,tN:MainThread] Loaded converter: CONVERTER_interval_to_bed12_0 +galaxy.datatypes.registry DEBUG 2024-02-23 13:08:03,055 [pN:main,p:73244,tN:MainThread] Loaded converter: CONVERTER_interval_to_bgzip_0 +galaxy.datatypes.registry DEBUG 2024-02-23 13:08:03,057 [pN:main,p:73244,tN:MainThread] Loaded converter: CONVERTER_interval_to_tabix_0 +galaxy.datatypes.registry DEBUG 2024-02-23 13:08:03,058 [pN:main,p:73244,tN:MainThread] Loaded converter: CONVERTER_interval_to_bigwig_0 +galaxy.datatypes.registry DEBUG 2024-02-23 13:08:03,059 [pN:main,p:73244,tN:MainThread] Loaded converter: CONVERTER_picard_interval_list_to_bed6 +galaxy.datatypes.registry DEBUG 2024-02-23 13:08:03,060 [pN:main,p:73244,tN:MainThread] Loaded converter: CONVERTER_tar_to_directory +galaxy.datatypes.registry DEBUG 2024-02-23 13:08:03,061 [pN:main,p:73244,tN:MainThread] Loaded converter: CONVERTER_uncompressed_to_gz +galaxy.datatypes.registry DEBUG 2024-02-23 13:08:03,063 [pN:main,p:73244,tN:MainThread] Loaded converter: CONVERTER_gz_to_uncompressed +galaxy.datatypes.registry DEBUG 2024-02-23 13:08:03,064 [pN:main,p:73244,tN:MainThread] Loaded converter: CONVERTER_uncompressed_to_gz +galaxy.datatypes.registry DEBUG 2024-02-23 13:08:03,065 [pN:main,p:73244,tN:MainThread] Loaded converter: CONVERTER_gz_to_uncompressed +galaxy.datatypes.registry DEBUG 2024-02-23 13:08:03,067 [pN:main,p:73244,tN:MainThread] Loaded converter: CONVERTER_uncompressed_to_gz +galaxy.datatypes.registry DEBUG 2024-02-23 13:08:03,068 [pN:main,p:73244,tN:MainThread] Loaded converter: CONVERTER_gz_to_uncompressed +galaxy.datatypes.registry DEBUG 2024-02-23 13:08:03,069 [pN:main,p:73244,tN:MainThread] Loaded converter: CONVERTER_maf_to_fasta_0 +galaxy.datatypes.registry DEBUG 2024-02-23 13:08:03,070 [pN:main,p:73244,tN:MainThread] Loaded converter: CONVERTER_maf_to_interval_0 +galaxy.datatypes.registry DEBUG 2024-02-23 13:08:03,072 [pN:main,p:73244,tN:MainThread] Loaded converter: CONVERTER_interval_to_tabix_0 +galaxy.datatypes.registry DEBUG 2024-02-23 13:08:03,075 [pN:main,p:73244,tN:MainThread] Loaded converter: CONVERTER_interval_to_bgzip_0 +galaxy.datatypes.registry DEBUG 2024-02-23 13:08:03,076 [pN:main,p:73244,tN:MainThread] Loaded converter: CONVERTER_bed_gff_or_vcf_to_bigwig_0 +galaxy.datatypes.registry DEBUG 2024-02-23 13:08:03,079 [pN:main,p:73244,tN:MainThread] Loaded converter: CONVERTER_interval_to_bgzip_0 +galaxy.datatypes.registry DEBUG 2024-02-23 13:08:03,081 [pN:main,p:73244,tN:MainThread] Loaded converter: CONVERTER_interval_to_tabix_0 +galaxy.datatypes.registry DEBUG 2024-02-23 13:08:03,082 [pN:main,p:73244,tN:MainThread] Loaded converter: CONVERTER_sam_to_unsorted_bam +galaxy.datatypes.registry DEBUG 2024-02-23 13:08:03,083 [pN:main,p:73244,tN:MainThread] Loaded converter: CONVERTER_bam_to_coodinate_sorted_bam +galaxy.datatypes.registry DEBUG 2024-02-23 13:08:03,084 [pN:main,p:73244,tN:MainThread] Loaded converter: CONVERTER_bam_to_qname_sorted_bam +galaxy.datatypes.registry DEBUG 2024-02-23 13:08:03,085 [pN:main,p:73244,tN:MainThread] Loaded converter: CONVERTER_sam_to_bigwig_0 +galaxy.datatypes.registry DEBUG 2024-02-23 13:08:03,087 [pN:main,p:73244,tN:MainThread] Loaded converter: tabular_to_dbnsfp +galaxy.datatypes.registry DEBUG 2024-02-23 13:08:03,088 [pN:main,p:73244,tN:MainThread] Loaded converter: tabular_to_csv +galaxy.datatypes.registry DEBUG 2024-02-23 13:08:03,090 [pN:main,p:73244,tN:MainThread] Loaded converter: CONVERTER_uncompressed_to_gz +galaxy.datatypes.registry DEBUG 2024-02-23 13:08:03,091 [pN:main,p:73244,tN:MainThread] Loaded converter: CONVERTER_gz_to_uncompressed +galaxy.datatypes.registry DEBUG 2024-02-23 13:08:03,093 [pN:main,p:73244,tN:MainThread] Loaded converter: CONVERTER_interval_to_bgzip_0 +galaxy.datatypes.registry DEBUG 2024-02-23 13:08:03,094 [pN:main,p:73244,tN:MainThread] Loaded converter: CONVERTER_vcf_to_vcf_bgzip_0 +galaxy.datatypes.registry DEBUG 2024-02-23 13:08:03,097 [pN:main,p:73244,tN:MainThread] Loaded converter: CONVERTER_interval_to_tabix_0 +galaxy.datatypes.registry DEBUG 2024-02-23 13:08:03,098 [pN:main,p:73244,tN:MainThread] Loaded converter: CONVERTER_bed_gff_or_vcf_to_bigwig_0 +galaxy.datatypes.registry DEBUG 2024-02-23 13:08:03,099 [pN:main,p:73244,tN:MainThread] Loaded converter: CONVERTER_uncompressed_to_gz +galaxy.datatypes.registry DEBUG 2024-02-23 13:08:03,101 [pN:main,p:73244,tN:MainThread] Loaded converter: CONVERTER_bcf_uncompressed_to_bcf +galaxy.datatypes.registry DEBUG 2024-02-23 13:08:03,102 [pN:main,p:73244,tN:MainThread] Loaded converter: CONVERTER_bcf_uncompressed_to_bcf +galaxy.datatypes.registry DEBUG 2024-02-23 13:08:03,103 [pN:main,p:73244,tN:MainThread] Loaded converter: CONVERTER_wig_to_bigwig +galaxy.datatypes.registry DEBUG 2024-02-23 13:08:03,104 [pN:main,p:73244,tN:MainThread] Loaded converter: CONVERTER_wiggle_to_interval_0 +galaxy.datatypes.registry DEBUG 2024-02-23 13:08:03,105 [pN:main,p:73244,tN:MainThread] Loaded converter: CONVERTER_vcf_bgzip_to_tabix_0 +galaxy.datatypes.registry DEBUG 2024-02-23 13:08:03,106 [pN:main,p:73244,tN:MainThread] Loaded converter: CONVERTER_gz_to_uncompressed +galaxy.datatypes.registry DEBUG 2024-02-23 13:08:03,107 [pN:main,p:73244,tN:MainThread] Loaded converter: lped2fpedconvert +galaxy.datatypes.registry DEBUG 2024-02-23 13:08:03,108 [pN:main,p:73244,tN:MainThread] Loaded converter: lped2pbedconvert +galaxy.datatypes.registry DEBUG 2024-02-23 13:08:03,109 [pN:main,p:73244,tN:MainThread] Loaded converter: pbed2lpedconvert +galaxy.datatypes.registry DEBUG 2024-02-23 13:08:03,109 [pN:main,p:73244,tN:MainThread] Loaded converter: pbed2ldindepconvert +galaxy.datatypes.registry DEBUG 2024-02-23 13:08:03,111 [pN:main,p:73244,tN:MainThread] Loaded converter: CONVERTER_uncompressed_to_gz +galaxy.datatypes.registry DEBUG 2024-02-23 13:08:03,112 [pN:main,p:73244,tN:MainThread] Loaded converter: CONVERTER_gz_to_uncompressed +galaxy.datatypes.registry DEBUG 2024-02-23 13:08:03,114 [pN:main,p:73244,tN:MainThread] Loaded converter: CONVERTER_biom +galaxy.datatypes.registry DEBUG 2024-02-23 13:08:03,115 [pN:main,p:73244,tN:MainThread] Loaded converter: CONVERTER_biom +galaxy.datatypes.registry DEBUG 2024-02-23 13:08:03,120 [pN:main,p:73244,tN:MainThread] Loaded converter: CONVERTER_molecules +galaxy.datatypes.registry DEBUG 2024-02-23 13:08:03,125 [pN:main,p:73244,tN:MainThread] Loaded converter: CONVERTER_molecules +galaxy.datatypes.registry DEBUG 2024-02-23 13:08:03,130 [pN:main,p:73244,tN:MainThread] Loaded converter: CONVERTER_molecules +galaxy.datatypes.registry DEBUG 2024-02-23 13:08:03,131 [pN:main,p:73244,tN:MainThread] Loaded converter: CONVERTER_SMILES_to_MOL +galaxy.datatypes.registry DEBUG 2024-02-23 13:08:03,136 [pN:main,p:73244,tN:MainThread] Loaded converter: CONVERTER_molecules +galaxy.datatypes.registry DEBUG 2024-02-23 13:08:03,137 [pN:main,p:73244,tN:MainThread] Loaded converter: CONVERTER_smiles_to_smiles +galaxy.datatypes.registry DEBUG 2024-02-23 13:08:03,142 [pN:main,p:73244,tN:MainThread] Loaded converter: CONVERTER_molecules +galaxy.datatypes.registry DEBUG 2024-02-23 13:08:03,147 [pN:main,p:73244,tN:MainThread] Loaded converter: CONVERTER_molecules +galaxy.datatypes.registry DEBUG 2024-02-23 13:08:03,152 [pN:main,p:73244,tN:MainThread] Loaded converter: CONVERTER_molecules +galaxy.datatypes.registry DEBUG 2024-02-23 13:08:03,157 [pN:main,p:73244,tN:MainThread] Loaded converter: CONVERTER_molecules +galaxy.datatypes.registry DEBUG 2024-02-23 13:08:03,161 [pN:main,p:73244,tN:MainThread] Loaded converter: CONVERTER_molecules +galaxy.datatypes.registry DEBUG 2024-02-23 13:08:03,166 [pN:main,p:73244,tN:MainThread] Loaded converter: CONVERTER_molecules +galaxy.datatypes.registry DEBUG 2024-02-23 13:08:03,167 [pN:main,p:73244,tN:MainThread] Loaded converter: CONVERTER_inchi_to_mol +galaxy.datatypes.registry DEBUG 2024-02-23 13:08:03,172 [pN:main,p:73244,tN:MainThread] Loaded converter: CONVERTER_molecules +galaxy.datatypes.registry DEBUG 2024-02-23 13:08:03,177 [pN:main,p:73244,tN:MainThread] Loaded converter: CONVERTER_molecules +galaxy.datatypes.registry DEBUG 2024-02-23 13:08:03,182 [pN:main,p:73244,tN:MainThread] Loaded converter: CONVERTER_molecules +galaxy.datatypes.registry DEBUG 2024-02-23 13:08:03,187 [pN:main,p:73244,tN:MainThread] Loaded converter: CONVERTER_molecules +galaxy.datatypes.registry DEBUG 2024-02-23 13:08:03,192 [pN:main,p:73244,tN:MainThread] Loaded converter: CONVERTER_molecules +galaxy.datatypes.registry DEBUG 2024-02-23 13:08:03,197 [pN:main,p:73244,tN:MainThread] Loaded converter: CONVERTER_molecules +galaxy.datatypes.registry DEBUG 2024-02-23 13:08:03,201 [pN:main,p:73244,tN:MainThread] Loaded converter: CONVERTER_molecules +galaxy.datatypes.registry DEBUG 2024-02-23 13:08:03,206 [pN:main,p:73244,tN:MainThread] Loaded converter: CONVERTER_molecules +galaxy.datatypes.registry DEBUG 2024-02-23 13:08:03,211 [pN:main,p:73244,tN:MainThread] Loaded converter: CONVERTER_molecules +galaxy.datatypes.registry DEBUG 2024-02-23 13:08:03,216 [pN:main,p:73244,tN:MainThread] Loaded converter: CONVERTER_molecules +galaxy.datatypes.registry DEBUG 2024-02-23 13:08:03,217 [pN:main,p:73244,tN:MainThread] Loaded converter: CONVERTER_mol2_to_mol +galaxy.datatypes.registry DEBUG 2024-02-23 13:08:03,222 [pN:main,p:73244,tN:MainThread] Loaded converter: CONVERTER_molecules +galaxy.datatypes.registry DEBUG 2024-02-23 13:08:03,224 [pN:main,p:73244,tN:MainThread] Loaded converter: CONVERTER_cml_to_smiles +galaxy.datatypes.registry DEBUG 2024-02-23 13:08:03,229 [pN:main,p:73244,tN:MainThread] Loaded converter: CONVERTER_molecules +galaxy.datatypes.registry DEBUG 2024-02-23 13:08:03,233 [pN:main,p:73244,tN:MainThread] Loaded converter: CONVERTER_molecules +galaxy.datatypes.registry DEBUG 2024-02-23 13:08:03,239 [pN:main,p:73244,tN:MainThread] Loaded converter: CONVERTER_molecules +galaxy.datatypes.registry DEBUG 2024-02-23 13:08:03,240 [pN:main,p:73244,tN:MainThread] Loaded converter: CONVERTER_Pdb_to_Gro_0 +galaxy.datatypes.registry DEBUG 2024-02-23 13:08:03,242 [pN:main,p:73244,tN:MainThread] Loaded converter: CONVERTER_mdconvert +galaxy.datatypes.registry DEBUG 2024-02-23 13:08:03,244 [pN:main,p:73244,tN:MainThread] Loaded converter: CONVERTER_mdconvert +galaxy.datatypes.registry DEBUG 2024-02-23 13:08:03,245 [pN:main,p:73244,tN:MainThread] Loaded converter: CONVERTER_mdconvert +galaxy.datatypes.registry DEBUG 2024-02-23 13:08:03,248 [pN:main,p:73244,tN:MainThread] Loaded converter: CONVERTER_mdconvert +galaxy.datatypes.registry DEBUG 2024-02-23 13:08:03,250 [pN:main,p:73244,tN:MainThread] Loaded converter: CONVERTER_mdconvert +galaxy.datatypes.registry DEBUG 2024-02-23 13:08:03,251 [pN:main,p:73244,tN:MainThread] Loaded converter: CONVERTER_mdconvert +galaxy.datatypes.registry DEBUG 2024-02-23 13:08:03,253 [pN:main,p:73244,tN:MainThread] Loaded converter: CONVERTER_Gro_to_Pdb_0 +galaxy.datatypes.registry DEBUG 2024-02-23 13:08:03,254 [pN:main,p:73244,tN:MainThread] Loaded converter: CONVERTER_ref_to_seq_taxomony +galaxy.datatypes.registry DEBUG 2024-02-23 13:08:03,255 [pN:main,p:73244,tN:MainThread] Loaded converter: CONVERTER_neostorezip_to_neostore +galaxy.datatypes.registry DEBUG 2024-02-23 13:08:03,256 [pN:main,p:73244,tN:MainThread] Loaded external metadata tool: __SET_METADATA__ +galaxy.tools.special_tools DEBUG 2024-02-23 13:08:03,258 [pN:main,p:73244,tN:MainThread] Loaded history export tool: __EXPORT_HISTORY__ +galaxy.tools.special_tools DEBUG 2024-02-23 13:08:03,259 [pN:main,p:73244,tN:MainThread] Loaded history export to uri tool: __EXPORT_HISTORY_TO_URI__ +galaxy.tools.special_tools DEBUG 2024-02-23 13:08:03,260 [pN:main,p:73244,tN:MainThread] Loaded history import tool: __IMPORT_HISTORY__ +galaxy.tools.special_tools DEBUG 2024-02-23 13:08:03,261 [pN:main,p:73244,tN:MainThread] Loaded data fetch tool: __DATA_FETCH__ +galaxy.visualization.plugins.registry INFO 2024-02-23 13:08:03,262 [pN:main,p:73244,tN:MainThread] VisualizationsRegistry, loaded plugin: PCA_3Dplot +galaxy.visualization.plugins.registry INFO 2024-02-23 13:08:03,263 [pN:main,p:73244,tN:MainThread] VisualizationsRegistry, loaded plugin: aequatus +galaxy.visualization.plugins.registry INFO 2024-02-23 13:08:03,263 [pN:main,p:73244,tN:MainThread] VisualizationsRegistry, loaded plugin: annotate_image +galaxy.visualization.plugins.config_parser INFO 2024-02-23 13:08:03,264 [pN:main,p:73244,tN:MainThread] template syntax is deprecated: use entry_point instead +galaxy.visualization.plugins.registry INFO 2024-02-23 13:08:03,265 [pN:main,p:73244,tN:MainThread] VisualizationsRegistry, loaded plugin: chiraviz +galaxy.visualization.plugins.config_parser INFO 2024-02-23 13:08:03,266 [pN:main,p:73244,tN:MainThread] Visualizations plugin disabled: Circster. Skipping... +galaxy.visualization.plugins.config_parser INFO 2024-02-23 13:08:03,266 [pN:main,p:73244,tN:MainThread] template syntax is deprecated: use entry_point instead +galaxy.visualization.plugins.registry INFO 2024-02-23 13:08:03,266 [pN:main,p:73244,tN:MainThread] VisualizationsRegistry, loaded plugin: csg +galaxy.visualization.plugins.registry INFO 2024-02-23 13:08:03,267 [pN:main,p:73244,tN:MainThread] VisualizationsRegistry, loaded plugin: cytoscape +galaxy.visualization.plugins.registry INFO 2024-02-23 13:08:03,268 [pN:main,p:73244,tN:MainThread] VisualizationsRegistry, loaded plugin: drawrna +galaxy.visualization.plugins.registry INFO 2024-02-23 13:08:03,269 [pN:main,p:73244,tN:MainThread] VisualizationsRegistry, loaded plugin: editor +galaxy.visualization.plugins.registry INFO 2024-02-23 13:08:03,270 [pN:main,p:73244,tN:MainThread] VisualizationsRegistry, loaded plugin: example +galaxy.visualization.plugins.config_parser INFO 2024-02-23 13:08:03,271 [pN:main,p:73244,tN:MainThread] template syntax is deprecated: use entry_point instead +galaxy.visualization.plugins.registry INFO 2024-02-23 13:08:03,272 [pN:main,p:73244,tN:MainThread] VisualizationsRegistry, loaded plugin: fits_image_viewer +galaxy.visualization.plugins.config_parser INFO 2024-02-23 13:08:03,273 [pN:main,p:73244,tN:MainThread] template syntax is deprecated: use entry_point instead +galaxy.visualization.plugins.registry INFO 2024-02-23 13:08:03,273 [pN:main,p:73244,tN:MainThread] VisualizationsRegistry, loaded plugin: graphviz +galaxy.visualization.plugins.registry INFO 2024-02-23 13:08:03,273 [pN:main,p:73244,tN:MainThread] VisualizationsRegistry, loaded plugin: h5web +galaxy.visualization.plugins.registry INFO 2024-02-23 13:08:03,276 [pN:main,p:73244,tN:MainThread] VisualizationsRegistry, loaded plugin: heatmap_cluster +galaxy.visualization.plugins.registry INFO 2024-02-23 13:08:03,278 [pN:main,p:73244,tN:MainThread] VisualizationsRegistry, loaded plugin: heatmap_default +galaxy.visualization.plugins.config_parser INFO 2024-02-23 13:08:03,278 [pN:main,p:73244,tN:MainThread] template syntax is deprecated: use entry_point instead +galaxy.visualization.plugins.registry INFO 2024-02-23 13:08:03,279 [pN:main,p:73244,tN:MainThread] VisualizationsRegistry, loaded plugin: hivtrace +galaxy.visualization.plugins.config_parser INFO 2024-02-23 13:08:03,279 [pN:main,p:73244,tN:MainThread] template syntax is deprecated: use entry_point instead +galaxy.visualization.plugins.registry INFO 2024-02-23 13:08:03,279 [pN:main,p:73244,tN:MainThread] VisualizationsRegistry, loaded plugin: hyphyvision +galaxy.visualization.plugins.registry INFO 2024-02-23 13:08:03,282 [pN:main,p:73244,tN:MainThread] VisualizationsRegistry, loaded plugin: jqplot_bar +galaxy.visualization.plugins.registry INFO 2024-02-23 13:08:03,284 [pN:main,p:73244,tN:MainThread] VisualizationsRegistry, loaded plugin: jqplot_box +galaxy.visualization.plugins.registry INFO 2024-02-23 13:08:03,286 [pN:main,p:73244,tN:MainThread] VisualizationsRegistry, loaded plugin: jqplot_histogram +galaxy.visualization.plugins.registry INFO 2024-02-23 13:08:03,288 [pN:main,p:73244,tN:MainThread] VisualizationsRegistry, loaded plugin: jqplot_line +galaxy.visualization.plugins.registry INFO 2024-02-23 13:08:03,290 [pN:main,p:73244,tN:MainThread] VisualizationsRegistry, loaded plugin: jqplot_scatter +galaxy.visualization.plugins.config_parser INFO 2024-02-23 13:08:03,290 [pN:main,p:73244,tN:MainThread] template syntax is deprecated: use entry_point instead +galaxy.visualization.plugins.registry INFO 2024-02-23 13:08:03,291 [pN:main,p:73244,tN:MainThread] VisualizationsRegistry, loaded plugin: audio_player +galaxy.visualization.plugins.config_parser INFO 2024-02-23 13:08:03,291 [pN:main,p:73244,tN:MainThread] template syntax is deprecated: use entry_point instead +galaxy.visualization.plugins.registry INFO 2024-02-23 13:08:03,291 [pN:main,p:73244,tN:MainThread] VisualizationsRegistry, loaded plugin: video_player +galaxy.visualization.plugins.registry INFO 2024-02-23 13:08:03,291 [pN:main,p:73244,tN:MainThread] VisualizationsRegistry, loaded plugin: msa +galaxy.visualization.plugins.config_parser INFO 2024-02-23 13:08:03,293 [pN:main,p:73244,tN:MainThread] template syntax is deprecated: use entry_point instead +galaxy.visualization.plugins.registry INFO 2024-02-23 13:08:03,293 [pN:main,p:73244,tN:MainThread] VisualizationsRegistry, loaded plugin: mvpapp +galaxy.visualization.plugins.registry INFO 2024-02-23 13:08:03,294 [pN:main,p:73244,tN:MainThread] VisualizationsRegistry, loaded plugin: ngl +galaxy.visualization.plugins.registry INFO 2024-02-23 13:08:03,295 [pN:main,p:73244,tN:MainThread] VisualizationsRegistry, loaded plugin: nora +galaxy.visualization.plugins.registry INFO 2024-02-23 13:08:03,298 [pN:main,p:73244,tN:MainThread] VisualizationsRegistry, loaded plugin: nvd3_bar +galaxy.visualization.plugins.registry INFO 2024-02-23 13:08:03,300 [pN:main,p:73244,tN:MainThread] VisualizationsRegistry, loaded plugin: nvd3_bar_stacked +galaxy.visualization.plugins.registry INFO 2024-02-23 13:08:03,302 [pN:main,p:73244,tN:MainThread] VisualizationsRegistry, loaded plugin: nvd3_histogram +galaxy.visualization.plugins.registry INFO 2024-02-23 13:08:03,304 [pN:main,p:73244,tN:MainThread] VisualizationsRegistry, loaded plugin: nvd3_histogram_discrete +galaxy.visualization.plugins.registry INFO 2024-02-23 13:08:03,306 [pN:main,p:73244,tN:MainThread] VisualizationsRegistry, loaded plugin: nvd3_horizontal +galaxy.visualization.plugins.registry INFO 2024-02-23 13:08:03,308 [pN:main,p:73244,tN:MainThread] VisualizationsRegistry, loaded plugin: nvd3_horizontal_stacked +galaxy.visualization.plugins.registry INFO 2024-02-23 13:08:03,310 [pN:main,p:73244,tN:MainThread] VisualizationsRegistry, loaded plugin: nvd3_line +galaxy.visualization.plugins.registry INFO 2024-02-23 13:08:03,312 [pN:main,p:73244,tN:MainThread] VisualizationsRegistry, loaded plugin: nvd3_line_focus +galaxy.visualization.plugins.registry INFO 2024-02-23 13:08:03,313 [pN:main,p:73244,tN:MainThread] VisualizationsRegistry, loaded plugin: nvd3_pie +galaxy.visualization.plugins.registry INFO 2024-02-23 13:08:03,315 [pN:main,p:73244,tN:MainThread] VisualizationsRegistry, loaded plugin: nvd3_scatter +galaxy.visualization.plugins.registry INFO 2024-02-23 13:08:03,317 [pN:main,p:73244,tN:MainThread] VisualizationsRegistry, loaded plugin: nvd3_stackedarea +galaxy.visualization.plugins.registry INFO 2024-02-23 13:08:03,319 [pN:main,p:73244,tN:MainThread] VisualizationsRegistry, loaded plugin: nvd3_stackedarea_full +galaxy.visualization.plugins.registry INFO 2024-02-23 13:08:03,321 [pN:main,p:73244,tN:MainThread] VisualizationsRegistry, loaded plugin: nvd3_stackedarea_stream +galaxy.visualization.plugins.registry INFO 2024-02-23 13:08:03,322 [pN:main,p:73244,tN:MainThread] VisualizationsRegistry, loaded plugin: openlayers +galaxy.visualization.plugins.registry INFO 2024-02-23 13:08:03,323 [pN:main,p:73244,tN:MainThread] VisualizationsRegistry, loaded plugin: openseadragon +galaxy.visualization.plugins.registry INFO 2024-02-23 13:08:03,324 [pN:main,p:73244,tN:MainThread] VisualizationsRegistry, loaded plugin: phylocanvas +galaxy.visualization.plugins.registry INFO 2024-02-23 13:08:03,326 [pN:main,p:73244,tN:MainThread] VisualizationsRegistry, loaded plugin: phyloviz +galaxy.visualization.plugins.registry INFO 2024-02-23 13:08:03,326 [pN:main,p:73244,tN:MainThread] VisualizationsRegistry, loaded plugin: pv +galaxy.visualization.plugins.registry INFO 2024-02-23 13:08:03,327 [pN:main,p:73244,tN:MainThread] VisualizationsRegistry, loaded plugin: scatterplot +galaxy.visualization.plugins.config_parser INFO 2024-02-23 13:08:03,328 [pN:main,p:73244,tN:MainThread] Visualizations plugin disabled: Sweepster. Skipping... +galaxy.visualization.plugins.registry INFO 2024-02-23 13:08:03,328 [pN:main,p:73244,tN:MainThread] VisualizationsRegistry, loaded plugin: trackster +galaxy.visualization.plugins.registry INFO 2024-02-23 13:08:03,329 [pN:main,p:73244,tN:MainThread] VisualizationsRegistry, loaded plugin: ts_visjs +galaxy.visualization.plugins.config_parser INFO 2024-02-23 13:08:03,329 [pN:main,p:73244,tN:MainThread] template syntax is deprecated: use entry_point instead +galaxy.visualization.plugins.registry INFO 2024-02-23 13:08:03,329 [pN:main,p:73244,tN:MainThread] VisualizationsRegistry, loaded plugin: unipept +galaxy.visualization.plugins.registry INFO 2024-02-23 13:08:03,330 [pN:main,p:73244,tN:MainThread] VisualizationsRegistry, loaded plugin: venn +galaxy.tours._impl INFO 2024-02-23 13:08:03,354 [pN:main,p:73244,tN:MainThread] Loaded tour 'core.galaxy_ui' +galaxy.tours._impl INFO 2024-02-23 13:08:03,371 [pN:main,p:73244,tN:MainThread] Loaded tour 'core.deferred' +galaxy.tours._impl INFO 2024-02-23 13:08:03,384 [pN:main,p:73244,tN:MainThread] Loaded tour 'core.history' +galaxy.tours._impl INFO 2024-02-23 13:08:03,395 [pN:main,p:73244,tN:MainThread] Loaded tour 'core.windows' +galaxy.workflow.scheduling_manager INFO 2024-02-23 13:08:03,401 [pN:main,p:73244,tN:MainThread] No workflow schedulers plugin config file defined, using default scheduler. +galaxy.web_stack.handlers INFO 2024-02-23 13:08:03,401 [pN:main,p:73244,tN:MainThread] WorkflowSchedulingManager: No job handler assignment method is set, defaulting to 'HANDLER_ASSIGNMENT_METHODS.DB_SKIP_LOCKED', set the `assign_with` attribute on <handlers> to override the default +galaxy.workflow.scheduling_manager DEBUG 2024-02-23 13:08:03,401 [pN:main,p:73244,tN:MainThread] Starting workflow schedulers +galaxy.app INFO 2024-02-23 13:08:03,403 [pN:main,p:73244,tN:MainThread] Galaxy app startup finished (2667.379 ms) +galaxy.web.framework.base DEBUG 2024-02-23 13:08:03,430 [pN:main,p:73244,tN:MainThread] Enabling 'user' controller, class: User +galaxy.web.framework.base DEBUG 2024-02-23 13:08:03,431 [pN:main,p:73244,tN:MainThread] Enabling 'data_manager' controller, class: DataManager +galaxy.web.framework.base DEBUG 2024-02-23 13:08:03,432 [pN:main,p:73244,tN:MainThread] Enabling 'async' controller, class: ASync +galaxy.web.framework.base DEBUG 2024-02-23 13:08:03,432 [pN:main,p:73244,tN:MainThread] Enabling 'tag' controller, class: TagsController +galaxy.web.framework.base DEBUG 2024-02-23 13:08:03,437 [pN:main,p:73244,tN:MainThread] Enabling 'page' controller, class: PageController +galaxy.web.framework.base DEBUG 2024-02-23 13:08:03,438 [pN:main,p:73244,tN:MainThread] Enabling 'root' controller, class: RootController +galaxy.web.framework.base DEBUG 2024-02-23 13:08:03,438 [pN:main,p:73244,tN:MainThread] Enabling 'tool_runner' controller, class: ToolRunner +galaxy.web.framework.base DEBUG 2024-02-23 13:08:03,439 [pN:main,p:73244,tN:MainThread] Enabling 'error' controller, class: Error +galaxy.web.framework.base DEBUG 2024-02-23 13:08:03,439 [pN:main,p:73244,tN:MainThread] Enabling 'forms' controller, class: Forms +galaxy.web.framework.base DEBUG 2024-02-23 13:08:03,454 [pN:main,p:73244,tN:MainThread] Enabling 'admin_toolshed' controller, class: AdminGalaxy +galaxy.web.framework.base DEBUG 2024-02-23 13:08:03,454 [pN:main,p:73244,tN:MainThread] Enabling 'admin_toolshed' controller, class: AdminToolshed +galaxy.web.framework.base DEBUG 2024-02-23 13:08:03,456 [pN:main,p:73244,tN:MainThread] Enabling 'visualization' controller, class: VisualizationController +galaxy.web.framework.base DEBUG 2024-02-23 13:08:03,456 [pN:main,p:73244,tN:MainThread] Enabling 'shed_tool_static' controller, class: ShedToolStatic +galaxy.web.framework.base DEBUG 2024-02-23 13:08:03,457 [pN:main,p:73244,tN:MainThread] Enabling 'authnz' controller, class: JSAppLauncher +galaxy.web.framework.base DEBUG 2024-02-23 13:08:03,457 [pN:main,p:73244,tN:MainThread] Enabling 'authnz' controller, class: OIDC +galaxy.web.framework.base DEBUG 2024-02-23 13:08:03,459 [pN:main,p:73244,tN:MainThread] Enabling 'workflow' controller, class: WorkflowController +galaxy.web.framework.base DEBUG 2024-02-23 13:08:03,460 [pN:main,p:73244,tN:MainThread] Enabling 'history' controller, class: HistoryController +galaxy.web.framework.base DEBUG 2024-02-23 13:08:03,490 [pN:main,p:73244,tN:MainThread] Enabling 'dataset' controller, class: DatasetInterface +galaxy.web.framework.base DEBUG 2024-02-23 13:08:03,490 [pN:main,p:73244,tN:MainThread] Enabling 'admin' controller, class: AdminGalaxy +galaxy.web.framework.base DEBUG 2024-02-23 13:08:04,203 [pN:main,p:73244,tN:MainThread] Enabling 'library_datasets' API controller, class: LibraryDatasetsController +galaxy.web.framework.base DEBUG 2024-02-23 13:08:04,355 [pN:main,p:73244,tN:MainThread] Enabling 'jobs' API controller, class: JobController +galaxy.web.framework.base DEBUG 2024-02-23 13:08:04,475 [pN:main,p:73244,tN:MainThread] Enabling 'job_files' API controller, class: JobFilesAPIController +galaxy.web.framework.base DEBUG 2024-02-23 13:08:04,523 [pN:main,p:73244,tN:MainThread] Enabling 'toolshed' API controller, class: ToolShedController +galaxy.web.framework.base DEBUG 2024-02-23 13:08:04,539 [pN:main,p:73244,tN:MainThread] Enabling 'tools' API controller, class: ToolsController +galaxy.web.framework.base DEBUG 2024-02-23 13:08:04,660 [pN:main,p:73244,tN:MainThread] Enabling 'trs_consumer' API controller, class: TrsConsumeAPIController +galaxy.web.framework.base DEBUG 2024-02-23 13:08:04,661 [pN:main,p:73244,tN:MainThread] Enabling 'history_dataset_extended_metadata' API controller, class: HistoryDatasetExtendMetadataController +galaxy.web.framework.base DEBUG 2024-02-23 13:08:04,661 [pN:main,p:73244,tN:MainThread] Enabling 'library_dataset_extended_metadata' API controller, class: LibraryDatasetExtendMetadataController +galaxy.web.framework.base DEBUG 2024-02-23 13:08:04,661 [pN:main,p:73244,tN:MainThread] Enabling 'container_resolution' API controller, class: ContainerResolutionAPIController +galaxy.web.framework.base DEBUG 2024-02-23 13:08:04,662 [pN:main,p:73244,tN:MainThread] Enabling 'job_ports' API controller, class: JobPortsAPIController +galaxy.web.framework.base DEBUG 2024-02-23 13:08:04,663 [pN:main,p:73244,tN:MainThread] Enabling 'tool_dependencies' API controller, class: ToolDependenciesAPIController +galaxy.web.framework.base DEBUG 2024-02-23 13:08:04,802 [pN:main,p:73244,tN:MainThread] Enabling 'history_content_provenance' API controller, class: HDAProvenanceController +galaxy.web.framework.base DEBUG 2024-02-23 13:08:04,802 [pN:main,p:73244,tN:MainThread] Enabling 'ldda_provenance' API controller, class: LDDAProvenanceController +galaxy.web.framework.base DEBUG 2024-02-23 13:08:04,803 [pN:main,p:73244,tN:MainThread] Enabling 'tool_entry_points' API controller, class: ToolEntryPointsAPIController +galaxy.web.framework.base DEBUG 2024-02-23 13:08:04,939 [pN:main,p:73244,tN:MainThread] Enabling 'authenticate' API controller, class: AuthenticationController +galaxy.web.framework.base DEBUG 2024-02-23 13:08:05,372 [pN:main,p:73244,tN:MainThread] Enabling 'trs_search' API controller, class: TrsSearchAPIController +galaxy.web.framework.base DEBUG 2024-02-23 13:08:05,425 [pN:main,p:73244,tN:MainThread] Enabling 'tool_shed_repositories' API controller, class: ToolShedRepositoriesController +galaxy.web.framework.base DEBUG 2024-02-23 13:08:05,611 [pN:main,p:73244,tN:MainThread] Enabling 'forms' API controller, class: FormDefinitionAPIController +galaxy.web.framework.base DEBUG 2024-02-23 13:08:05,887 [pN:main,p:73244,tN:MainThread] Enabling 'workflows' API controller, class: WorkflowsAPIController +galaxy.web.framework.base DEBUG 2024-02-23 13:08:05,888 [pN:main,p:73244,tN:MainThread] Enabling 'uploads' API controller, class: UploadsAPIController +galaxy.web.framework.base DEBUG 2024-02-23 13:08:06,537 [pN:main,p:73244,tN:MainThread] Enabling 'history_annotations' API controller, class: HistoryAnnotationsController +galaxy.web.framework.base DEBUG 2024-02-23 13:08:06,538 [pN:main,p:73244,tN:MainThread] Enabling 'history_content_annotations' API controller, class: HistoryContentAnnotationsController +galaxy.web.framework.base DEBUG 2024-02-23 13:08:06,538 [pN:main,p:73244,tN:MainThread] Enabling 'workflow_annotations' API controller, class: WorkflowAnnotationsController +galaxy.web.framework.base DEBUG 2024-02-23 13:08:06,582 [pN:main,p:73244,tN:MainThread] Enabling 'visualizations' API controller, class: VisualizationsController +galaxy.web.framework.base DEBUG 2024-02-23 13:08:06,583 [pN:main,p:73244,tN:MainThread] Enabling 'sanitize_allow' API controller, class: SanitizeAllowController +galaxy.web.framework.base DEBUG 2024-02-23 13:08:06,583 [pN:main,p:73244,tN:MainThread] Enabling 'page_revisions' API controller, class: PageRevisionsController +galaxy.web.framework.base DEBUG 2024-02-23 13:08:06,653 [pN:main,p:73244,tN:MainThread] Enabling 'library_contents' API controller, class: LibraryContentsController +galaxy.web.framework.base DEBUG 2024-02-23 13:08:06,771 [pN:main,p:73244,tN:MainThread] Enabling 'users' API controller, class: UserAPIController +galaxy.web.framework.base DEBUG 2024-02-23 13:08:06,772 [pN:main,p:73244,tN:MainThread] Enabling 'cloudauthz' API controller, class: CloudAuthzController +galaxy.web.framework.base DEBUG 2024-02-23 13:08:06,772 [pN:main,p:73244,tN:MainThread] Enabling 'webhooks' API controller, class: WebhooksController +galaxy.web.framework.base DEBUG 2024-02-23 13:08:06,847 [pN:main,p:73244,tN:MainThread] Enabling 'plugins' API controller, class: PluginsController +galaxy.web.framework.base DEBUG 2024-02-23 13:08:06,882 [pN:main,p:73244,tN:MainThread] Enabling 'dynamic_tools' API controller, class: DynamicToolsController +galaxy.webapps.util DEBUG 2024-02-23 13:08:07,164 [pN:main,p:73244,tN:MainThread] Enabling 'paste.httpexceptions' middleware +galaxy.webapps.util DEBUG 2024-02-23 13:08:07,165 [pN:main,p:73244,tN:MainThread] Enabling 'RemoteUser' middleware +galaxy.webapps.util DEBUG 2024-02-23 13:08:07,165 [pN:main,p:73244,tN:MainThread] Enabling 'ErrorMiddleware' middleware +galaxy.webapps.util DEBUG 2024-02-23 13:08:07,165 [pN:main,p:73244,tN:MainThread] Enabling 'TusMiddleware' middleware +galaxy.webapps.util DEBUG 2024-02-23 13:08:07,165 [pN:main,p:73244,tN:MainThread] Enabling 'XForwardedHostMiddleware' middleware +galaxy.webapps.util DEBUG 2024-02-23 13:08:07,165 [pN:main,p:73244,tN:MainThread] Enabling 'RequestIDMiddleware' middleware +galaxy.webapps.util DEBUG 2024-02-23 13:08:07,165 [pN:main,p:73244,tN:MainThread] Enabling 'build_url_map' middleware +galaxy.webapps.galaxy.buildapp DEBUG 2024-02-23 13:08:07,165 [pN:main,p:73244,tN:MainThread] Prior to webapp return, Galaxy thread <_MainThread(MainThread, started 140325188585280)> is alive. +galaxy.web_stack DEBUG 2024-02-23 13:08:08,774 [pN:main.1,p:73449,tN:Thread-2] server_name set to: main.1 +galaxy.jobs.manager DEBUG 2024-02-23 13:08:08,775 [pN:main.1,p:73449,tN:Thread-2] Initializing job handler +galaxy.jobs INFO 2024-02-23 13:08:08,775 [pN:main.1,p:73449,tN:Thread-2] Handler 'main.1' will load all configured runner plugins +galaxy.jobs.runners.state_handler_factory DEBUG 2024-02-23 13:08:08,786 [pN:main.1,p:73449,tN:Thread-2] Loaded 'failure' state handler from module galaxy.jobs.runners.state_handlers.resubmit +galaxy.jobs DEBUG 2024-02-23 13:08:08,786 [pN:main.1,p:73449,tN:Thread-2] Loaded job runner 'galaxy.jobs.runners.local:LocalJobRunner' as 'local' +galaxy.jobs.handler DEBUG 2024-02-23 13:08:08,786 [pN:main.1,p:73449,tN:Thread-2] Loaded job runners plugins: local +galaxy.jobs.runners DEBUG 2024-02-23 13:08:08,787 [pN:main.1,p:73449,tN:Thread-2] Starting 4 LocalRunner workers +galaxy.jobs.handler DEBUG 2024-02-23 13:08:08,795 [pN:main.1,p:73449,tN:Thread-2] Handler queue starting for jobs assigned to handler: main.1 +galaxy.jobs.handler INFO 2024-02-23 13:08:08,825 [pN:main.1,p:73449,tN:JobHandlerQueue.monitor_thread] Handler job grabber initialized with 'HANDLER_ASSIGNMENT_METHODS.DB_SKIP_LOCKED' assignment method for handler 'main.1', tag(s): +galaxy.jobs.handler INFO 2024-02-23 13:08:08,825 [pN:main.1,p:73449,tN:Thread-2] job handler queue started +galaxy.jobs.handler INFO 2024-02-23 13:08:08,839 [pN:main.1,p:73449,tN:Thread-2] job handler stop queue started +galaxy.jobs.handler INFO 2024-02-23 13:08:08,847 [pN:main.1,p:73449,tN:WorkflowRequestMonitor.monitor_thread] Handler job grabber initialized with 'HANDLER_ASSIGNMENT_METHODS.DB_SKIP_LOCKED' assignment method for handler 'main.1', tag(s): None, _default_ +galaxy.queue_worker INFO 2024-02-23 13:08:08,860 [pN:main.1,p:73449,tN:Thread-2] Binding and starting galaxy control worker for main.1 +galaxy.queue_worker DEBUG 2024-02-23 13:08:08,867 [pN:main.1,p:73449,tN:Thread-2] Executing toolbox reload on 'main.1' +galaxy.util WARNING 2024-02-23 13:08:08,928 [pN:main.1,p:73449,tN:Thread-2] directory not found: /scratch/rico/galaxy/lib/galaxy/util/../../../config/plugins/activities +galaxy.tools WARNING 2024-02-23 13:08:08,954 [pN:main.1,p:73449,tN:Thread-2] The default shed tool config file (/tmp/tmpcb4g3qga/shed_tool_conf.xml) has been added to the tool_config_file option, if this is not the desired behavior, please set shed_tool_config_file to your primary shed-enabled tool config file +galaxy.model.database_heartbeat DEBUG 2024-02-23 13:08:08,955 [pN:main.1,p:73449,tN:database_heartbeart_main.1.thread] main.1 is config watcher +galaxy.tool_util.toolbox.base INFO 2024-02-23 13:08:08,959 [pN:main.1,p:73449,tN:Thread-2] Parsing the tool configuration /tmp/tmpcb4g3qga/tool_conf.xml +galaxy.tool_util.toolbox.base DEBUG 2024-02-23 13:08:08,962 [pN:main.1,p:73449,tN:Thread-2] Tool path for tool configuration /tmp/tmpcb4g3qga/tool_conf.xml is None +galaxy.tools WARNING 2024-02-23 13:08:08,964 [pN:main.1,p:73449,tN:Thread-2] The default shed tool config file (/tmp/tmpcb4g3qga/shed_tool_conf.xml) has been added to the tool_config_file option, if this is not the desired behavior, please set shed_tool_config_file to your primary shed-enabled tool config file +galaxy.tool_util.toolbox.base INFO 2024-02-23 13:08:08,964 [pN:main.1,p:73449,tN:Thread-2] Parsing the tool configuration /tmp/tmpcb4g3qga/shed_tools_conf.xml +galaxy.tool_util.toolbox.base DEBUG 2024-02-23 13:08:08,965 [pN:main.1,p:73449,tN:Thread-2] Tool path for shed tool configuration /tmp/tmpcb4g3qga/shed_tools_conf.xml is /tmp/tmpcb4g3qga/shed_tools +galaxy.tools WARNING 2024-02-23 13:08:08,966 [pN:main.1,p:73449,tN:Thread-2] The default shed tool config file (/tmp/tmpcb4g3qga/shed_tool_conf.xml) has been added to the tool_config_file option, if this is not the desired behavior, please set shed_tool_config_file to your primary shed-enabled tool config file +galaxy.tool_util.toolbox.base INFO 2024-02-23 13:08:08,966 [pN:main.1,p:73449,tN:Thread-2] Parsing the tool configuration /tmp/tmpcb4g3qga/empty_tool_conf.xml +galaxy.tool_util.toolbox.base DEBUG 2024-02-23 13:08:08,969 [pN:main.1,p:73449,tN:Thread-2] Tool path for tool configuration /tmp/tmpcb4g3qga/empty_tool_conf.xml is None +galaxy.tool_util.toolbox.base DEBUG 2024-02-23 13:08:08,970 [pN:main.1,p:73449,tN:Thread-2] Reading tools from config files finished (21.047 ms) +galaxy.tool_util.toolbox.base DEBUG 2024-02-23 13:08:08,970 [pN:main.1,p:73449,tN:Thread-2] Loaded tool id: upload1, version: 1.1.7 into tool panel.. +galaxy.tool_util.toolbox.base DEBUG 2024-02-23 13:08:08,970 [pN:main.1,p:73449,tN:Thread-2] Loading tool panel finished (0.578 ms) +galaxy.tool_util.toolbox.base DEBUG 2024-02-23 13:08:08,975 [pN:main.1,p:73449,tN:Thread-2] Loaded tool id: upload1, version: 1.1.7 into tool panel.. +galaxy.tool_util.toolbox.views.edam DEBUG 2024-02-23 13:08:08,975 [pN:main.1,p:73449,tN:Thread-2] Loading EDAM tool panel finished (4.166 ms) +galaxy.tool_util.toolbox.base DEBUG 2024-02-23 13:08:08,977 [pN:main.1,p:73449,tN:Thread-2] Loaded tool id: upload1, version: 1.1.7 into tool panel.. +galaxy.tool_util.toolbox.views.edam DEBUG 2024-02-23 13:08:08,977 [pN:main.1,p:73449,tN:Thread-2] Loading EDAM tool panel finished (1.780 ms) +galaxy.datatypes.registry DEBUG 2024-02-23 13:08:08,977 [pN:main.1,p:73449,tN:Thread-2] Loaded converter: CONVERTER_uncompressed_to_gz +galaxy.datatypes.registry DEBUG 2024-02-23 13:08:08,978 [pN:main.1,p:73449,tN:Thread-2] Loaded converter: CONVERTER_gz_to_uncompressed +galaxy.datatypes.registry DEBUG 2024-02-23 13:08:08,978 [pN:main.1,p:73449,tN:Thread-2] Loaded converter: CONVERTER_uncompressed_to_gz +galaxy.datatypes.registry DEBUG 2024-02-23 13:08:08,978 [pN:main.1,p:73449,tN:Thread-2] Loaded converter: CONVERTER_gz_to_uncompressed +galaxy.datatypes.registry DEBUG 2024-02-23 13:08:08,978 [pN:main.1,p:73449,tN:Thread-2] Loaded converter: CONVERTER_uncompressed_to_gz +galaxy.datatypes.registry DEBUG 2024-02-23 13:08:08,979 [pN:main.1,p:73449,tN:Thread-2] Loaded converter: CONVERTER_gz_to_uncompressed +galaxy.datatypes.registry DEBUG 2024-02-23 13:08:08,979 [pN:main.1,p:73449,tN:Thread-2] Loaded converter: CONVERTER_Bam_Bai_0 +galaxy.datatypes.registry DEBUG 2024-02-23 13:08:08,979 [pN:main.1,p:73449,tN:Thread-2] Loaded converter: CONVERTER_bam_to_bigwig_0 +galaxy.datatypes.registry DEBUG 2024-02-23 13:08:08,979 [pN:main.1,p:73449,tN:Thread-2] Loaded converter: CONVERTER_bam_to_qname_sorted_bam +galaxy.datatypes.registry DEBUG 2024-02-23 13:08:08,980 [pN:main.1,p:73449,tN:Thread-2] Loaded converter: CONVERTER_bam_to_bigwig_0 +galaxy.datatypes.registry DEBUG 2024-02-23 13:08:08,980 [pN:main.1,p:73449,tN:Thread-2] Loaded converter: CONVERTER_bam_to_coodinate_sorted_bam +galaxy.datatypes.registry DEBUG 2024-02-23 13:08:08,980 [pN:main.1,p:73449,tN:Thread-2] Loaded converter: CONVERTER_bam_to_qname_sorted_bam +galaxy.datatypes.registry DEBUG 2024-02-23 13:08:08,980 [pN:main.1,p:73449,tN:Thread-2] Loaded converter: CONVERTER_cram_to_bam_0 +galaxy.datatypes.registry DEBUG 2024-02-23 13:08:08,980 [pN:main.1,p:73449,tN:Thread-2] Loaded converter: CONVERTER_bed_to_gff_0 +galaxy.datatypes.registry DEBUG 2024-02-23 13:08:08,981 [pN:main.1,p:73449,tN:Thread-2] Loaded converter: CONVERTER_interval_to_bgzip_0 +galaxy.datatypes.registry DEBUG 2024-02-23 13:08:08,981 [pN:main.1,p:73449,tN:Thread-2] Loaded converter: CONVERTER_interval_to_tabix_0 +galaxy.datatypes.registry DEBUG 2024-02-23 13:08:08,981 [pN:main.1,p:73449,tN:Thread-2] Loaded converter: CONVERTER_bed_gff_or_vcf_to_bigwig_0 +galaxy.datatypes.registry DEBUG 2024-02-23 13:08:08,981 [pN:main.1,p:73449,tN:Thread-2] Loaded converter: CONVERTER_bed_to_fli_0 +galaxy.datatypes.registry DEBUG 2024-02-23 13:08:08,981 [pN:main.1,p:73449,tN:Thread-2] Loaded converter: CONVERTER_bedgraph_to_bigwig +galaxy.datatypes.registry DEBUG 2024-02-23 13:08:08,982 [pN:main.1,p:73449,tN:Thread-2] Loaded converter: CONVERTER_len_to_linecount +galaxy.datatypes.registry DEBUG 2024-02-23 13:08:08,982 [pN:main.1,p:73449,tN:Thread-2] Loaded converter: CONVERTER_parquet_to_csv +galaxy.datatypes.registry DEBUG 2024-02-23 13:08:08,983 [pN:main.1,p:73449,tN:Thread-2] Loaded converter: bigwigtowig +galaxy.datatypes.registry DEBUG 2024-02-23 13:08:08,983 [pN:main.1,p:73449,tN:Thread-2] Loaded converter: CONVERTER_interval_to_bgzip_0 +galaxy.datatypes.registry DEBUG 2024-02-23 13:08:08,983 [pN:main.1,p:73449,tN:Thread-2] Loaded converter: CONVERTER_interval_to_tabix_0 +galaxy.datatypes.registry DEBUG 2024-02-23 13:08:08,983 [pN:main.1,p:73449,tN:Thread-2] Loaded converter: CONVERTER_bed_gff_or_vcf_to_bigwig_0 +galaxy.datatypes.registry DEBUG 2024-02-23 13:08:08,983 [pN:main.1,p:73449,tN:Thread-2] Loaded converter: csv_to_tabular +galaxy.datatypes.registry DEBUG 2024-02-23 13:08:08,984 [pN:main.1,p:73449,tN:Thread-2] Loaded converter: tabular_to_csv +galaxy.datatypes.registry DEBUG 2024-02-23 13:08:08,984 [pN:main.1,p:73449,tN:Thread-2] Loaded converter: CONVERTER_fasta_to_tabular +galaxy.datatypes.registry DEBUG 2024-02-23 13:08:08,984 [pN:main.1,p:73449,tN:Thread-2] Loaded converter: CONVERTER_fasta_to_bowtie_base_index +galaxy.datatypes.registry DEBUG 2024-02-23 13:08:08,984 [pN:main.1,p:73449,tN:Thread-2] Loaded converter: CONVERTER_fasta_to_bowtie_color_index +galaxy.datatypes.registry DEBUG 2024-02-23 13:08:08,984 [pN:main.1,p:73449,tN:Thread-2] Loaded converter: CONVERTER_fasta_to_2bit +galaxy.datatypes.registry DEBUG 2024-02-23 13:08:08,985 [pN:main.1,p:73449,tN:Thread-2] Loaded converter: CONVERTER_fasta_to_len +galaxy.datatypes.registry DEBUG 2024-02-23 13:08:08,986 [pN:main.1,p:73449,tN:Thread-2] Loaded converter: CONVERTER_fasta_to_fai +galaxy.datatypes.registry DEBUG 2024-02-23 13:08:08,986 [pN:main.1,p:73449,tN:Thread-2] Loaded converter: CONVERTER_uncompressed_to_gz +galaxy.datatypes.registry DEBUG 2024-02-23 13:08:08,986 [pN:main.1,p:73449,tN:Thread-2] Loaded converter: CONVERTER_gz_to_uncompressed +galaxy.datatypes.registry DEBUG 2024-02-23 13:08:08,987 [pN:main.1,p:73449,tN:Thread-2] Loaded converter: CONVERTER_fastq_to_fqtoc0 +galaxy.datatypes.registry DEBUG 2024-02-23 13:08:08,987 [pN:main.1,p:73449,tN:Thread-2] Loaded converter: CONVERTER_uncompressed_to_gz +galaxy.datatypes.registry DEBUG 2024-02-23 13:08:08,987 [pN:main.1,p:73449,tN:Thread-2] Loaded converter: CONVERTER_gz_to_uncompressed +galaxy.datatypes.registry DEBUG 2024-02-23 13:08:08,987 [pN:main.1,p:73449,tN:Thread-2] Loaded converter: CONVERTER_bz2_to_uncompressed +galaxy.datatypes.registry DEBUG 2024-02-23 13:08:08,987 [pN:main.1,p:73449,tN:Thread-2] Loaded converter: CONVERTER_fastq_to_fqtoc0 +galaxy.datatypes.registry DEBUG 2024-02-23 13:08:08,988 [pN:main.1,p:73449,tN:Thread-2] Loaded converter: CONVERTER_uncompressed_to_gz +galaxy.datatypes.registry DEBUG 2024-02-23 13:08:08,988 [pN:main.1,p:73449,tN:Thread-2] Loaded converter: CONVERTER_gz_to_uncompressed +galaxy.datatypes.registry DEBUG 2024-02-23 13:08:08,988 [pN:main.1,p:73449,tN:Thread-2] Loaded converter: CONVERTER_bz2_to_uncompressed +galaxy.datatypes.registry DEBUG 2024-02-23 13:08:08,988 [pN:main.1,p:73449,tN:Thread-2] Loaded converter: CONVERTER_fastq_to_fqtoc0 +galaxy.datatypes.registry DEBUG 2024-02-23 13:08:08,988 [pN:main.1,p:73449,tN:Thread-2] Loaded converter: CONVERTER_uncompressed_to_gz +galaxy.datatypes.registry DEBUG 2024-02-23 13:08:08,988 [pN:main.1,p:73449,tN:Thread-2] Loaded converter: CONVERTER_gz_to_uncompressed +galaxy.datatypes.registry DEBUG 2024-02-23 13:08:08,989 [pN:main.1,p:73449,tN:Thread-2] Loaded converter: CONVERTER_bz2_to_uncompressed +galaxy.datatypes.registry DEBUG 2024-02-23 13:08:08,990 [pN:main.1,p:73449,tN:Thread-2] Loaded converter: CONVERTER_fastq_to_fqtoc0 +galaxy.datatypes.registry DEBUG 2024-02-23 13:08:08,990 [pN:main.1,p:73449,tN:Thread-2] Loaded converter: CONVERTER_uncompressed_to_gz +galaxy.datatypes.registry DEBUG 2024-02-23 13:08:08,990 [pN:main.1,p:73449,tN:Thread-2] Loaded converter: CONVERTER_gz_to_uncompressed +galaxy.datatypes.registry DEBUG 2024-02-23 13:08:08,990 [pN:main.1,p:73449,tN:Thread-2] Loaded converter: CONVERTER_bz2_to_uncompressed +galaxy.datatypes.registry DEBUG 2024-02-23 13:08:08,990 [pN:main.1,p:73449,tN:Thread-2] Loaded converter: CONVERTER_fastq_to_fqtoc0 +galaxy.datatypes.registry DEBUG 2024-02-23 13:08:08,990 [pN:main.1,p:73449,tN:Thread-2] Loaded converter: CONVERTER_uncompressed_to_gz +galaxy.datatypes.registry DEBUG 2024-02-23 13:08:08,991 [pN:main.1,p:73449,tN:Thread-2] Loaded converter: CONVERTER_gz_to_uncompressed +galaxy.datatypes.registry DEBUG 2024-02-23 13:08:08,991 [pN:main.1,p:73449,tN:Thread-2] Loaded converter: CONVERTER_bz2_to_uncompressed +galaxy.datatypes.registry DEBUG 2024-02-23 13:08:08,991 [pN:main.1,p:73449,tN:Thread-2] Loaded converter: CONVERTER_gff_to_bed_0 +galaxy.datatypes.registry DEBUG 2024-02-23 13:08:08,991 [pN:main.1,p:73449,tN:Thread-2] Loaded converter: CONVERTER_gff_to_interval_index_0 +galaxy.datatypes.registry DEBUG 2024-02-23 13:08:08,991 [pN:main.1,p:73449,tN:Thread-2] Loaded converter: CONVERTER_bed_gff_or_vcf_to_bigwig_0 +galaxy.datatypes.registry DEBUG 2024-02-23 13:08:08,991 [pN:main.1,p:73449,tN:Thread-2] Loaded converter: CONVERTER_gff_to_fli_0 +galaxy.datatypes.registry DEBUG 2024-02-23 13:08:08,991 [pN:main.1,p:73449,tN:Thread-2] Loaded converter: CONVERTER_interval_to_bgzip_0 +galaxy.datatypes.registry DEBUG 2024-02-23 13:08:08,992 [pN:main.1,p:73449,tN:Thread-2] Loaded converter: CONVERTER_interval_to_tabix_0 +galaxy.datatypes.registry DEBUG 2024-02-23 13:08:08,992 [pN:main.1,p:73449,tN:Thread-2] Loaded converter: CONVERTER_uncompressed_to_gz +galaxy.datatypes.registry DEBUG 2024-02-23 13:08:08,992 [pN:main.1,p:73449,tN:Thread-2] Loaded converter: CONVERTER_gz_to_uncompressed +galaxy.datatypes.registry DEBUG 2024-02-23 13:08:08,992 [pN:main.1,p:73449,tN:Thread-2] Loaded converter: CONVERTER_bz2_to_uncompressed +galaxy.datatypes.registry DEBUG 2024-02-23 13:08:08,992 [pN:main.1,p:73449,tN:Thread-2] Loaded converter: CONVERTER_gff_to_interval_index_0 +galaxy.datatypes.registry DEBUG 2024-02-23 13:08:08,992 [pN:main.1,p:73449,tN:Thread-2] Loaded converter: CONVERTER_bed_gff_or_vcf_to_bigwig_0 +galaxy.datatypes.registry DEBUG 2024-02-23 13:08:08,992 [pN:main.1,p:73449,tN:Thread-2] Loaded converter: CONVERTER_interval_to_bed_0 +galaxy.datatypes.registry DEBUG 2024-02-23 13:08:08,992 [pN:main.1,p:73449,tN:Thread-2] Loaded converter: CONVERTER_interval_to_bedstrict_0 +galaxy.datatypes.registry DEBUG 2024-02-23 13:08:08,992 [pN:main.1,p:73449,tN:Thread-2] Loaded converter: CONVERTER_interval_to_bed6_0 +galaxy.datatypes.registry DEBUG 2024-02-23 13:08:08,993 [pN:main.1,p:73449,tN:Thread-2] Loaded converter: CONVERTER_interval_to_bed12_0 +galaxy.datatypes.registry DEBUG 2024-02-23 13:08:08,993 [pN:main.1,p:73449,tN:Thread-2] Loaded converter: CONVERTER_interval_to_bgzip_0 +galaxy.datatypes.registry DEBUG 2024-02-23 13:08:08,993 [pN:main.1,p:73449,tN:Thread-2] Loaded converter: CONVERTER_interval_to_tabix_0 +galaxy.datatypes.registry DEBUG 2024-02-23 13:08:08,993 [pN:main.1,p:73449,tN:Thread-2] Loaded converter: CONVERTER_interval_to_bigwig_0 +galaxy.datatypes.registry DEBUG 2024-02-23 13:08:08,993 [pN:main.1,p:73449,tN:Thread-2] Loaded converter: CONVERTER_picard_interval_list_to_bed6 +galaxy.datatypes.registry DEBUG 2024-02-23 13:08:08,993 [pN:main.1,p:73449,tN:Thread-2] Loaded converter: CONVERTER_tar_to_directory +galaxy.datatypes.registry DEBUG 2024-02-23 13:08:08,993 [pN:main.1,p:73449,tN:Thread-2] Loaded converter: CONVERTER_uncompressed_to_gz +galaxy.datatypes.registry DEBUG 2024-02-23 13:08:08,993 [pN:main.1,p:73449,tN:Thread-2] Loaded converter: CONVERTER_gz_to_uncompressed +galaxy.datatypes.registry DEBUG 2024-02-23 13:08:08,993 [pN:main.1,p:73449,tN:Thread-2] Loaded converter: CONVERTER_uncompressed_to_gz +galaxy.datatypes.registry DEBUG 2024-02-23 13:08:08,993 [pN:main.1,p:73449,tN:Thread-2] Loaded converter: CONVERTER_gz_to_uncompressed +galaxy.datatypes.registry DEBUG 2024-02-23 13:08:08,994 [pN:main.1,p:73449,tN:Thread-2] Loaded converter: CONVERTER_uncompressed_to_gz +galaxy.datatypes.registry DEBUG 2024-02-23 13:08:08,994 [pN:main.1,p:73449,tN:Thread-2] Loaded converter: CONVERTER_gz_to_uncompressed +galaxy.datatypes.registry DEBUG 2024-02-23 13:08:08,994 [pN:main.1,p:73449,tN:Thread-2] Loaded converter: CONVERTER_maf_to_fasta_0 +galaxy.datatypes.registry DEBUG 2024-02-23 13:08:08,994 [pN:main.1,p:73449,tN:Thread-2] Loaded converter: CONVERTER_maf_to_interval_0 +galaxy.datatypes.registry DEBUG 2024-02-23 13:08:08,994 [pN:main.1,p:73449,tN:Thread-2] Loaded converter: CONVERTER_interval_to_tabix_0 +galaxy.datatypes.registry DEBUG 2024-02-23 13:08:08,994 [pN:main.1,p:73449,tN:Thread-2] Loaded converter: CONVERTER_interval_to_bgzip_0 +galaxy.datatypes.registry DEBUG 2024-02-23 13:08:08,994 [pN:main.1,p:73449,tN:Thread-2] Loaded converter: CONVERTER_bed_gff_or_vcf_to_bigwig_0 +galaxy.datatypes.registry DEBUG 2024-02-23 13:08:08,994 [pN:main.1,p:73449,tN:Thread-2] Loaded converter: CONVERTER_interval_to_bgzip_0 +galaxy.datatypes.registry DEBUG 2024-02-23 13:08:08,995 [pN:main.1,p:73449,tN:Thread-2] Loaded converter: CONVERTER_interval_to_tabix_0 +galaxy.datatypes.registry DEBUG 2024-02-23 13:08:08,995 [pN:main.1,p:73449,tN:Thread-2] Loaded converter: CONVERTER_sam_to_unsorted_bam +galaxy.datatypes.registry DEBUG 2024-02-23 13:08:08,995 [pN:main.1,p:73449,tN:Thread-2] Loaded converter: CONVERTER_bam_to_coodinate_sorted_bam +galaxy.datatypes.registry DEBUG 2024-02-23 13:08:08,995 [pN:main.1,p:73449,tN:Thread-2] Loaded converter: CONVERTER_bam_to_qname_sorted_bam +galaxy.datatypes.registry DEBUG 2024-02-23 13:08:08,995 [pN:main.1,p:73449,tN:Thread-2] Loaded converter: CONVERTER_sam_to_bigwig_0 +galaxy.datatypes.registry DEBUG 2024-02-23 13:08:08,995 [pN:main.1,p:73449,tN:Thread-2] Loaded converter: tabular_to_dbnsfp +galaxy.datatypes.registry DEBUG 2024-02-23 13:08:08,995 [pN:main.1,p:73449,tN:Thread-2] Loaded converter: tabular_to_csv +galaxy.datatypes.registry DEBUG 2024-02-23 13:08:08,995 [pN:main.1,p:73449,tN:Thread-2] Loaded converter: CONVERTER_uncompressed_to_gz +galaxy.datatypes.registry DEBUG 2024-02-23 13:08:08,995 [pN:main.1,p:73449,tN:Thread-2] Loaded converter: CONVERTER_gz_to_uncompressed +galaxy.datatypes.registry DEBUG 2024-02-23 13:08:08,995 [pN:main.1,p:73449,tN:Thread-2] Loaded converter: CONVERTER_interval_to_bgzip_0 +galaxy.datatypes.registry DEBUG 2024-02-23 13:08:08,996 [pN:main.1,p:73449,tN:Thread-2] Loaded converter: CONVERTER_vcf_to_vcf_bgzip_0 +galaxy.datatypes.registry DEBUG 2024-02-23 13:08:08,996 [pN:main.1,p:73449,tN:Thread-2] Loaded converter: CONVERTER_interval_to_tabix_0 +galaxy.datatypes.registry DEBUG 2024-02-23 13:08:08,996 [pN:main.1,p:73449,tN:Thread-2] Loaded converter: CONVERTER_bed_gff_or_vcf_to_bigwig_0 +galaxy.datatypes.registry DEBUG 2024-02-23 13:08:08,996 [pN:main.1,p:73449,tN:Thread-2] Loaded converter: CONVERTER_uncompressed_to_gz +galaxy.datatypes.registry DEBUG 2024-02-23 13:08:08,996 [pN:main.1,p:73449,tN:Thread-2] Loaded converter: CONVERTER_bcf_uncompressed_to_bcf +galaxy.datatypes.registry DEBUG 2024-02-23 13:08:08,996 [pN:main.1,p:73449,tN:Thread-2] Loaded converter: CONVERTER_bcf_uncompressed_to_bcf +galaxy.datatypes.registry DEBUG 2024-02-23 13:08:08,997 [pN:main.1,p:73449,tN:Thread-2] Loaded converter: CONVERTER_wig_to_bigwig +galaxy.datatypes.registry DEBUG 2024-02-23 13:08:08,997 [pN:main.1,p:73449,tN:Thread-2] Loaded converter: CONVERTER_wiggle_to_interval_0 +galaxy.datatypes.registry DEBUG 2024-02-23 13:08:08,997 [pN:main.1,p:73449,tN:Thread-2] Loaded converter: CONVERTER_vcf_bgzip_to_tabix_0 +galaxy.datatypes.registry DEBUG 2024-02-23 13:08:08,997 [pN:main.1,p:73449,tN:Thread-2] Loaded converter: CONVERTER_gz_to_uncompressed +galaxy.datatypes.registry DEBUG 2024-02-23 13:08:08,997 [pN:main.1,p:73449,tN:Thread-2] Loaded converter: lped2fpedconvert +galaxy.datatypes.registry DEBUG 2024-02-23 13:08:08,998 [pN:main.1,p:73449,tN:Thread-2] Loaded converter: lped2pbedconvert +galaxy.datatypes.registry DEBUG 2024-02-23 13:08:08,998 [pN:main.1,p:73449,tN:Thread-2] Loaded converter: pbed2lpedconvert +galaxy.datatypes.registry DEBUG 2024-02-23 13:08:08,998 [pN:main.1,p:73449,tN:Thread-2] Loaded converter: pbed2ldindepconvert +galaxy.datatypes.registry DEBUG 2024-02-23 13:08:08,998 [pN:main.1,p:73449,tN:Thread-2] Loaded converter: CONVERTER_uncompressed_to_gz +galaxy.datatypes.registry DEBUG 2024-02-23 13:08:08,998 [pN:main.1,p:73449,tN:Thread-2] Loaded converter: CONVERTER_gz_to_uncompressed +galaxy.datatypes.registry DEBUG 2024-02-23 13:08:08,999 [pN:main.1,p:73449,tN:Thread-2] Loaded converter: CONVERTER_biom +galaxy.datatypes.registry DEBUG 2024-02-23 13:08:08,999 [pN:main.1,p:73449,tN:Thread-2] Loaded converter: CONVERTER_biom +galaxy.datatypes.registry DEBUG 2024-02-23 13:08:09,000 [pN:main.1,p:73449,tN:Thread-2] Loaded converter: CONVERTER_molecules +galaxy.datatypes.registry DEBUG 2024-02-23 13:08:09,000 [pN:main.1,p:73449,tN:Thread-2] Loaded converter: CONVERTER_molecules +galaxy.datatypes.registry DEBUG 2024-02-23 13:08:09,001 [pN:main.1,p:73449,tN:Thread-2] Loaded converter: CONVERTER_molecules +galaxy.datatypes.registry DEBUG 2024-02-23 13:08:09,002 [pN:main.1,p:73449,tN:Thread-2] Loaded converter: CONVERTER_SMILES_to_MOL +galaxy.datatypes.registry DEBUG 2024-02-23 13:08:09,002 [pN:main.1,p:73449,tN:Thread-2] Loaded converter: CONVERTER_molecules +galaxy.datatypes.registry DEBUG 2024-02-23 13:08:09,002 [pN:main.1,p:73449,tN:Thread-2] Loaded converter: CONVERTER_smiles_to_smiles +galaxy.datatypes.registry DEBUG 2024-02-23 13:08:09,003 [pN:main.1,p:73449,tN:Thread-2] Loaded converter: CONVERTER_molecules +galaxy.datatypes.registry DEBUG 2024-02-23 13:08:09,003 [pN:main.1,p:73449,tN:Thread-2] Loaded converter: CONVERTER_molecules +galaxy.datatypes.registry DEBUG 2024-02-23 13:08:09,003 [pN:main.1,p:73449,tN:Thread-2] Loaded converter: CONVERTER_molecules +galaxy.datatypes.registry DEBUG 2024-02-23 13:08:09,013 [pN:main.1,p:73449,tN:Thread-2] Loaded converter: CONVERTER_molecules +galaxy.datatypes.registry DEBUG 2024-02-23 13:08:09,014 [pN:main.1,p:73449,tN:Thread-2] Loaded converter: CONVERTER_molecules +galaxy.datatypes.registry DEBUG 2024-02-23 13:08:09,014 [pN:main.1,p:73449,tN:Thread-2] Loaded converter: CONVERTER_molecules +galaxy.datatypes.registry DEBUG 2024-02-23 13:08:09,014 [pN:main.1,p:73449,tN:Thread-2] Loaded converter: CONVERTER_inchi_to_mol +galaxy.datatypes.registry DEBUG 2024-02-23 13:08:09,014 [pN:main.1,p:73449,tN:Thread-2] Loaded converter: CONVERTER_molecules +galaxy.datatypes.registry DEBUG 2024-02-23 13:08:09,014 [pN:main.1,p:73449,tN:Thread-2] Loaded converter: CONVERTER_molecules +galaxy.datatypes.registry DEBUG 2024-02-23 13:08:09,014 [pN:main.1,p:73449,tN:Thread-2] Loaded converter: CONVERTER_molecules +galaxy.datatypes.registry DEBUG 2024-02-23 13:08:09,015 [pN:main.1,p:73449,tN:Thread-2] Loaded converter: CONVERTER_molecules +galaxy.datatypes.registry DEBUG 2024-02-23 13:08:09,015 [pN:main.1,p:73449,tN:Thread-2] Loaded converter: CONVERTER_molecules +galaxy.datatypes.registry DEBUG 2024-02-23 13:08:09,018 [pN:main.1,p:73449,tN:Thread-2] Loaded converter: CONVERTER_molecules +galaxy.datatypes.registry DEBUG 2024-02-23 13:08:09,020 [pN:main.1,p:73449,tN:Thread-2] Loaded converter: CONVERTER_molecules +galaxy.datatypes.registry DEBUG 2024-02-23 13:08:09,020 [pN:main.1,p:73449,tN:Thread-2] Loaded converter: CONVERTER_molecules +galaxy.datatypes.registry DEBUG 2024-02-23 13:08:09,020 [pN:main.1,p:73449,tN:Thread-2] Loaded converter: CONVERTER_molecules +galaxy.datatypes.registry DEBUG 2024-02-23 13:08:09,020 [pN:main.1,p:73449,tN:Thread-2] Loaded converter: CONVERTER_molecules +galaxy.datatypes.registry DEBUG 2024-02-23 13:08:09,020 [pN:main.1,p:73449,tN:Thread-2] Loaded converter: CONVERTER_mol2_to_mol +galaxy.datatypes.registry DEBUG 2024-02-23 13:08:09,021 [pN:main.1,p:73449,tN:Thread-2] Loaded converter: CONVERTER_molecules +galaxy.datatypes.registry DEBUG 2024-02-23 13:08:09,021 [pN:main.1,p:73449,tN:Thread-2] Loaded converter: CONVERTER_cml_to_smiles +galaxy.datatypes.registry DEBUG 2024-02-23 13:08:09,021 [pN:main.1,p:73449,tN:Thread-2] Loaded converter: CONVERTER_molecules +galaxy.datatypes.registry DEBUG 2024-02-23 13:08:09,022 [pN:main.1,p:73449,tN:Thread-2] Loaded converter: CONVERTER_molecules +galaxy.datatypes.registry DEBUG 2024-02-23 13:08:09,022 [pN:main.1,p:73449,tN:Thread-2] Loaded converter: CONVERTER_molecules +galaxy.datatypes.registry DEBUG 2024-02-23 13:08:09,022 [pN:main.1,p:73449,tN:Thread-2] Loaded converter: CONVERTER_Pdb_to_Gro_0 +galaxy.datatypes.registry DEBUG 2024-02-23 13:08:09,022 [pN:main.1,p:73449,tN:Thread-2] Loaded converter: CONVERTER_mdconvert +galaxy.datatypes.registry DEBUG 2024-02-23 13:08:09,022 [pN:main.1,p:73449,tN:Thread-2] Loaded converter: CONVERTER_mdconvert +galaxy.datatypes.registry DEBUG 2024-02-23 13:08:09,023 [pN:main.1,p:73449,tN:Thread-2] Loaded converter: CONVERTER_mdconvert +galaxy.datatypes.registry DEBUG 2024-02-23 13:08:09,023 [pN:main.1,p:73449,tN:Thread-2] Loaded converter: CONVERTER_mdconvert +galaxy.datatypes.registry DEBUG 2024-02-23 13:08:09,023 [pN:main.1,p:73449,tN:Thread-2] Loaded converter: CONVERTER_mdconvert +galaxy.datatypes.registry DEBUG 2024-02-23 13:08:09,023 [pN:main.1,p:73449,tN:Thread-2] Loaded converter: CONVERTER_mdconvert +galaxy.datatypes.registry DEBUG 2024-02-23 13:08:09,023 [pN:main.1,p:73449,tN:Thread-2] Loaded converter: CONVERTER_Gro_to_Pdb_0 +galaxy.datatypes.registry DEBUG 2024-02-23 13:08:09,024 [pN:main.1,p:73449,tN:Thread-2] Loaded converter: CONVERTER_ref_to_seq_taxomony +galaxy.datatypes.registry DEBUG 2024-02-23 13:08:09,024 [pN:main.1,p:73449,tN:Thread-2] Loaded converter: CONVERTER_neostorezip_to_neostore +galaxy.datatypes.registry DEBUG 2024-02-23 13:08:09,028 [pN:main.1,p:73449,tN:Thread-2] Loaded external metadata tool: __SET_METADATA__ +galaxy.tools.special_tools DEBUG 2024-02-23 13:08:09,031 [pN:main.1,p:73449,tN:Thread-2] Loaded history export tool: __EXPORT_HISTORY__ +galaxy.tools.special_tools DEBUG 2024-02-23 13:08:09,032 [pN:main.1,p:73449,tN:Thread-2] Loaded history export to uri tool: __EXPORT_HISTORY_TO_URI__ +galaxy.tools.special_tools DEBUG 2024-02-23 13:08:09,033 [pN:main.1,p:73449,tN:Thread-2] Loaded history import tool: __IMPORT_HISTORY__ +galaxy.tools.special_tools DEBUG 2024-02-23 13:08:09,036 [pN:main.1,p:73449,tN:Thread-2] Loaded data fetch tool: __DATA_FETCH__ +galaxy.queue_worker INFO 2024-02-23 13:08:09,036 [pN:main.1,p:73449,tN:Thread-2] Queuing async task rebuild_toolbox_search_index for main.1. +galaxy.queue_worker DEBUG 2024-02-23 13:08:09,112 [pN:main.1,p:73449,tN:Thread-2] Toolbox reload (245.340 ms) +galaxy.queue_worker INFO 2024-02-23 13:08:09,112 [pN:main.1,p:73449,tN:Thread-2] Queuing async task rebuild_toolbox_search_index for main.1. +galaxy.web_stack INFO 2024-02-23 13:08:09,134 [pN:main.1,p:73449,tN:Thread-2] Galaxy server instance 'main.1' is running +[92m +Serving on http://127.0.0.1:45699 +[0m +multipart.multipart DEBUG 2024-02-23 13:08:09,336 [pN:main.1,p:73449,tN:MainThread] Calling on_field_start with no data +multipart.multipart DEBUG 2024-02-23 13:08:09,336 [pN:main.1,p:73449,tN:MainThread] Calling on_field_name with data[0:4] +multipart.multipart DEBUG 2024-02-23 13:08:09,336 [pN:main.1,p:73449,tN:MainThread] Calling on_field_data with data[5:63] +multipart.multipart DEBUG 2024-02-23 13:08:09,337 [pN:main.1,p:73449,tN:MainThread] Calling on_field_end with no data +multipart.multipart DEBUG 2024-02-23 13:08:09,337 [pN:main.1,p:73449,tN:MainThread] Calling on_end with no data +galaxy.tools INFO 2024-02-23 13:08:09,508 [pN:main.1,p:73449,tN:WSGI_2] Validated and populated state for tool request (11.339 ms) +galaxy.tools.actions.upload DEBUG 2024-02-23 13:08:09,514 [pN:main.1,p:73449,tN:WSGI_2] Persisted uploads (0.138 ms) +galaxy.tools.actions.upload DEBUG 2024-02-23 13:08:09,569 [pN:main.1,p:73449,tN:WSGI_2] Checked uploads (55.105 ms) +galaxy.tools.actions.upload DEBUG 2024-02-23 13:08:09,572 [pN:main.1,p:73449,tN:WSGI_2] Created upload job (2.692 ms) +galaxy.tools.execute DEBUG 2024-02-23 13:08:09,572 [pN:main.1,p:73449,tN:WSGI_2] Tool upload1 created job None (58.508 ms) +galaxy.web_stack.handlers INFO 2024-02-23 13:08:09,591 [pN:main.1,p:73449,tN:WSGI_2] (Job[id=1,tool_id=upload1]) Handler '_default_' assigned using 'HANDLER_ASSIGNMENT_METHODS.DB_SKIP_LOCKED' assignment method +galaxy.tools.execute DEBUG 2024-02-23 13:08:09,595 [pN:main.1,p:73449,tN:WSGI_2] Created 1 job(s) for tool upload1 request (86.887 ms) +galaxy.jobs.mapper DEBUG 2024-02-23 13:08:10,003 [pN:main.1,p:73449,tN:JobHandlerQueue.monitor_thread] (1) Mapped job to destination id: docker_local +galaxy.jobs.handler DEBUG 2024-02-23 13:08:10,007 [pN:main.1,p:73449,tN:JobHandlerQueue.monitor_thread] (1) Dispatching to local runner +galaxy.jobs DEBUG 2024-02-23 13:08:10,017 [pN:main.1,p:73449,tN:JobHandlerQueue.monitor_thread] (1) Persisting job destination (destination id: docker_local) +galaxy.jobs DEBUG 2024-02-23 13:08:10,027 [pN:main.1,p:73449,tN:JobHandlerQueue.monitor_thread] (1) Working directory for job is: /tmp/tmpcb4g3qga/job_working_directory/000/1 +galaxy.jobs.runners DEBUG 2024-02-23 13:08:10,033 [pN:main.1,p:73449,tN:JobHandlerQueue.monitor_thread] Job [1] queued (25.746 ms) +galaxy.jobs.handler INFO 2024-02-23 13:08:10,042 [pN:main.1,p:73449,tN:JobHandlerQueue.monitor_thread] (1) Job dispatched +galaxy.queue_worker INFO 2024-02-23 13:08:10,123 [pN:main.1,p:73449,tN:Thread-1] Instance 'main.1' received 'rebuild_toolbox_search_index' task, executing now. +galaxy.tools.search DEBUG 2024-02-23 13:08:10,123 [pN:main.1,p:73449,tN:Thread-1] Starting to build toolbox index of panel default. +galaxy.tools.search DEBUG 2024-02-23 13:08:10,135 [pN:main.1,p:73449,tN:Thread-1] Toolbox index of panel default finished (11.545 ms) +galaxy.tools.search DEBUG 2024-02-23 13:08:10,135 [pN:main.1,p:73449,tN:Thread-1] Starting to build toolbox index of panel ontology:edam_operations. +galaxy.tools.search DEBUG 2024-02-23 13:08:10,140 [pN:main.1,p:73449,tN:Thread-1] Toolbox index of panel ontology:edam_operations finished (4.820 ms) +galaxy.tools.search DEBUG 2024-02-23 13:08:10,141 [pN:main.1,p:73449,tN:Thread-1] Starting to build toolbox index of panel ontology:edam_topics. +galaxy.tools.search DEBUG 2024-02-23 13:08:10,144 [pN:main.1,p:73449,tN:Thread-1] Toolbox index of panel ontology:edam_topics finished (3.156 ms) +galaxy.queue_worker INFO 2024-02-23 13:08:10,151 [pN:main.1,p:73449,tN:Thread-1] Instance 'main.1' received 'rebuild_toolbox_search_index' task, executing now. +galaxy.tools.search DEBUG 2024-02-23 13:08:10,151 [pN:main.1,p:73449,tN:Thread-1] Starting to build toolbox index of panel default. +galaxy.tools.search DEBUG 2024-02-23 13:08:10,156 [pN:main.1,p:73449,tN:Thread-1] Toolbox index of panel default finished (4.966 ms) +galaxy.tools.search DEBUG 2024-02-23 13:08:10,157 [pN:main.1,p:73449,tN:Thread-1] Starting to build toolbox index of panel ontology:edam_operations. +galaxy.tools.search DEBUG 2024-02-23 13:08:10,162 [pN:main.1,p:73449,tN:Thread-1] Toolbox index of panel ontology:edam_operations finished (5.241 ms) +galaxy.tools.search DEBUG 2024-02-23 13:08:10,162 [pN:main.1,p:73449,tN:Thread-1] Starting to build toolbox index of panel ontology:edam_topics. +galaxy.tools.search DEBUG 2024-02-23 13:08:10,171 [pN:main.1,p:73449,tN:Thread-1] Toolbox index of panel ontology:edam_topics finished (8.195 ms) +galaxy.jobs DEBUG 2024-02-23 13:08:10,206 [pN:main.1,p:73449,tN:LocalRunner.work_thread-0] Job wrapper for Job [1] prepared (153.017 ms) +galaxy.tool_util.deps.containers INFO 2024-02-23 13:08:10,208 [pN:main.1,p:73449,tN:LocalRunner.work_thread-0] Checking with container resolver [ExplicitContainerResolver[]] found description [None] +galaxy.tool_util.deps.containers INFO 2024-02-23 13:08:10,208 [pN:main.1,p:73449,tN:LocalRunner.work_thread-0] Checking with container resolver [CachedMulledDockerContainerResolver[namespace=biocontainers]] found description [None] +galaxy.tool_util.deps.containers INFO 2024-02-23 13:08:10,208 [pN:main.1,p:73449,tN:LocalRunner.work_thread-0] Checking with container resolver [CachedMulledDockerContainerResolver[namespace=local]] found description [None] +galaxy.tool_util.deps.containers INFO 2024-02-23 13:08:10,209 [pN:main.1,p:73449,tN:LocalRunner.work_thread-0] Checking with container resolver [MulledDockerContainerResolver[namespace=biocontainers]] found description [None] +galaxy.tool_util.deps.containers INFO 2024-02-23 13:08:10,209 [pN:main.1,p:73449,tN:LocalRunner.work_thread-0] Checking with container resolver [BuildDockerContainerResolver[namespace=local]] found description [None] +galaxy.jobs.command_factory INFO 2024-02-23 13:08:10,238 [pN:main.1,p:73449,tN:LocalRunner.work_thread-0] Built script [/tmp/tmpcb4g3qga/job_working_directory/000/1/tool_script.sh] for tool command [python '/scratch/rico/galaxy/tools/data_source/upload.py' '/scratch/rico/galaxy' '/tmp/tmpcb4g3qga/job_working_directory/000/1/registry.xml' '/tmp/tmpcb4g3qga/job_working_directory/000/1/upload_params.json' '1:/tmp/tmpcb4g3qga/job_working_directory/000/1/outputs/dataset_8346b28b-7368-4ba4-bc11-fb6aad7e77c9_files:/tmp/tmpcb4g3qga/job_working_directory/000/1/outputs/dataset_8346b28b-7368-4ba4-bc11-fb6aad7e77c9.dat'] +galaxy.jobs.runners DEBUG 2024-02-23 13:08:10,329 [pN:main.1,p:73449,tN:LocalRunner.work_thread-0] (1) command is: mkdir -p working outputs configs +if [ -d _working ]; then + rm -rf working/ outputs/ configs/; cp -R _working working; cp -R _outputs outputs; cp -R _configs configs +else + cp -R working _working; cp -R outputs _outputs; cp -R configs _configs +fi +cd working; /bin/bash /tmp/tmpcb4g3qga/job_working_directory/000/1/tool_script.sh > '../outputs/tool_stdout' 2> '../outputs/tool_stderr'; return_code=$?; echo $return_code > /tmp/tmpcb4g3qga/job_working_directory/000/1/galaxy_1.ec; cd '/tmp/tmpcb4g3qga/job_working_directory/000/1'; +[ "$GALAXY_VIRTUAL_ENV" = "None" ] && GALAXY_VIRTUAL_ENV="$_GALAXY_VIRTUAL_ENV"; _galaxy_setup_environment True; python metadata/set.py; sh -c "exit $return_code" +galaxy.jobs.runners.local DEBUG 2024-02-23 13:08:10,352 [pN:main.1,p:73449,tN:LocalRunner.work_thread-0] (1) executing job script: /tmp/tmpcb4g3qga/job_working_directory/000/1/galaxy_1.sh +galaxy.jobs.runners.util.process_groups DEBUG 2024-02-23 13:08:16,529 [pN:main.1,p:73449,tN:LocalRunner.work_thread-0] check_pg(): No process found in process group 73471 +galaxy.jobs.runners.local DEBUG 2024-02-23 13:08:16,530 [pN:main.1,p:73449,tN:LocalRunner.work_thread-0] execution finished: /tmp/tmpcb4g3qga/job_working_directory/000/1/galaxy_1.sh +galaxy.jobs DEBUG 2024-02-23 13:08:16,553 [pN:main.1,p:73449,tN:LocalRunner.work_thread-0] finish(): Moved /tmp/tmpcb4g3qga/job_working_directory/000/1/outputs/dataset_8346b28b-7368-4ba4-bc11-fb6aad7e77c9.dat to /tmp/tmpcb4g3qga/files/8/3/4/dataset_8346b28b-7368-4ba4-bc11-fb6aad7e77c9.dat +galaxy.model.metadata DEBUG 2024-02-23 13:08:16,562 [pN:main.1,p:73449,tN:LocalRunner.work_thread-0] loading metadata from file for: HistoryDatasetAssociation 1 +galaxy.jobs DEBUG 2024-02-23 13:08:16,617 [pN:main.1,p:73449,tN:LocalRunner.work_thread-0] job_wrapper.finish for job 1 executed (70.619 ms) +galaxy.tools INFO 2024-02-23 13:08:16,664 [pN:main.1,p:73449,tN:WSGI_1] Validated and populated state for tool request (12.309 ms) +galaxy.tools.actions INFO 2024-02-23 13:08:16,671 [pN:main.1,p:73449,tN:WSGI_1] Handled output named adaptor_report for tool ncbi_fcs_adaptor (3.210 ms) +galaxy.tools.actions INFO 2024-02-23 13:08:16,674 [pN:main.1,p:73449,tN:WSGI_1] Handled output named clean_fasta for tool ncbi_fcs_adaptor (2.623 ms) +galaxy.tools.actions INFO 2024-02-23 13:08:16,681 [pN:main.1,p:73449,tN:WSGI_1] Added output datasets to history (7.376 ms) +galaxy.tools.actions INFO 2024-02-23 13:08:16,683 [pN:main.1,p:73449,tN:WSGI_1] Setup for job Job[unflushed,tool_id=ncbi_fcs_adaptor] complete, ready to be enqueued (1.395 ms) +galaxy.tools.execute DEBUG 2024-02-23 13:08:16,683 [pN:main.1,p:73449,tN:WSGI_1] Tool ncbi_fcs_adaptor created job None (16.631 ms) +galaxy.web_stack.handlers INFO 2024-02-23 13:08:16,705 [pN:main.1,p:73449,tN:WSGI_1] (Job[id=2,tool_id=ncbi_fcs_adaptor]) Handler '_default_' assigned using 'HANDLER_ASSIGNMENT_METHODS.DB_SKIP_LOCKED' assignment method +galaxy.tools.execute DEBUG 2024-02-23 13:08:16,708 [pN:main.1,p:73449,tN:WSGI_1] Created 1 job(s) for tool ncbi_fcs_adaptor request (43.875 ms) +galaxy.jobs.mapper DEBUG 2024-02-23 13:08:17,184 [pN:main.1,p:73449,tN:JobHandlerQueue.monitor_thread] (2) Mapped job to destination id: docker_local +galaxy.jobs.handler DEBUG 2024-02-23 13:08:17,187 [pN:main.1,p:73449,tN:JobHandlerQueue.monitor_thread] (2) Dispatching to local runner +galaxy.jobs DEBUG 2024-02-23 13:08:17,192 [pN:main.1,p:73449,tN:JobHandlerQueue.monitor_thread] (2) Persisting job destination (destination id: docker_local) +galaxy.jobs DEBUG 2024-02-23 13:08:17,199 [pN:main.1,p:73449,tN:JobHandlerQueue.monitor_thread] (2) Working directory for job is: /tmp/tmpcb4g3qga/job_working_directory/000/2 +galaxy.jobs.runners DEBUG 2024-02-23 13:08:17,206 [pN:main.1,p:73449,tN:JobHandlerQueue.monitor_thread] Job [2] queued (18.655 ms) +galaxy.jobs.handler INFO 2024-02-23 13:08:17,217 [pN:main.1,p:73449,tN:JobHandlerQueue.monitor_thread] (2) Job dispatched +galaxy.security.object_wrapper WARNING 2024-02-23 13:08:17,255 [pN:main.1,p:73449,tN:LocalRunner.work_thread-0] Unable to create dynamic subclass SafeStringWrapper__galaxy.model.none_like.None__NoneType__NotImplementedType__Number__SafeStringWrapper__ToolParameterValueWrapper__bool__bytearray__ellipsis for <class 'galaxy.model.none_like.NoneDataset'>, None: type() doesn't support MRO entry resolution; use types.new_class() +galaxy.jobs DEBUG 2024-02-23 13:08:17,268 [pN:main.1,p:73449,tN:LocalRunner.work_thread-0] Job wrapper for Job [2] prepared (41.890 ms) +galaxy.tool_util.deps.containers INFO 2024-02-23 13:08:17,268 [pN:main.1,p:73449,tN:LocalRunner.work_thread-0] Checking with container resolver [ExplicitContainerResolver[]] found description [ContainerDescription[identifier=ncbi/fcs-adaptor:0.5.0,type=docker]] +galaxy.jobs.command_factory INFO 2024-02-23 13:08:17,304 [pN:main.1,p:73449,tN:LocalRunner.work_thread-0] Built script [/tmp/tmpcb4g3qga/job_working_directory/000/2/tool_script.sh] for tool command [/app/fcs/bin/av_screen_x -o "$(pwd)" '--prok' '/tmp/tmpcb4g3qga/files/8/3/4/dataset_8346b28b-7368-4ba4-bc11-fb6aad7e77c9.dat'] +galaxy.jobs.runners DEBUG 2024-02-23 13:08:17,371 [pN:main.1,p:73449,tN:LocalRunner.work_thread-0] (2) command is: mkdir -p working outputs configs +if [ -d _working ]; then + rm -rf working/ outputs/ configs/; cp -R _working working; cp -R _outputs outputs; cp -R _configs configs +else + cp -R working _working; cp -R outputs _outputs; cp -R configs _configs +fi +cd working; +_on_exit() { + docker kill ed7f173e111a4a46b8e32e5b6284b151 &> /dev/null +} +trap _on_exit EXIT +docker inspect ncbi/fcs-adaptor:0.5.0 > /dev/null 2>&1 +[ $? -ne 0 ] && docker pull ncbi/fcs-adaptor:0.5.0 > /dev/null 2>&1 + +docker run -e "GALAXY_SLOTS=$GALAXY_SLOTS" -e "GALAXY_MEMORY_MB=$GALAXY_MEMORY_MB" -e "GALAXY_MEMORY_MB_PER_SLOT=$GALAXY_MEMORY_MB_PER_SLOT" -e "HOME=$HOME" -e "_GALAXY_JOB_HOME_DIR=$_GALAXY_JOB_HOME_DIR" -e "_GALAXY_JOB_TMP_DIR=$_GALAXY_JOB_TMP_DIR" -e "TMPDIR=$TMPDIR" -e "TMP=$TMP" -e "TEMP=$TEMP" --name ed7f173e111a4a46b8e32e5b6284b151 -v "$_GALAXY_JOB_TMP_DIR:$_GALAXY_JOB_TMP_DIR:rw" -v "$TMPDIR:$TMPDIR:rw" -v "$TMP:$TMP:rw" -v "$TEMP:$TEMP:rw" -v /scratch/rico/galaxy:/scratch/rico/galaxy:ro -v /scratch/rico/galaxytools/tools/ncbi_fcs_adaptor:/scratch/rico/galaxytools/tools/ncbi_fcs_adaptor:ro -v /tmp/tmpcb4g3qga/job_working_directory/000/2:/tmp/tmpcb4g3qga/job_working_directory/000/2:ro -v /tmp/tmpcb4g3qga/job_working_directory/000/2/outputs:/tmp/tmpcb4g3qga/job_working_directory/000/2/outputs:rw -v "$_GALAXY_JOB_HOME_DIR:$_GALAXY_JOB_HOME_DIR:rw" -v /tmp/tmpcb4g3qga/job_working_directory/000/2/working:/tmp/tmpcb4g3qga/job_working_directory/000/2/working:rw -v /tmp/tmpcb4g3qga/files:/tmp/tmpcb4g3qga/files:ro -v /scratch/rico/galaxy/tool-data:/scratch/rico/galaxy/tool-data:ro --cpus ${GALAXY_SLOTS:-1} -w /tmp/tmpcb4g3qga/job_working_directory/000/2/working --rm --user 1028:1028 ncbi/fcs-adaptor:0.5.0 /bin/sh /tmp/tmpcb4g3qga/job_working_directory/000/2/tool_script.sh > '../outputs/tool_stdout' 2> '../outputs/tool_stderr'; return_code=$?; echo $return_code > /tmp/tmpcb4g3qga/job_working_directory/000/2/galaxy_2.ec; +if [ -f "/tmp/tmpcb4g3qga/job_working_directory/000/2/working/fcs_adaptor_report.txt" ] ; then cp "/tmp/tmpcb4g3qga/job_working_directory/000/2/working/fcs_adaptor_report.txt" "/tmp/tmpcb4g3qga/job_working_directory/000/2/outputs/dataset_ad6ed385-7ea5-4304-844d-28eb8215db3a.dat" ; fi; +if [ -f "/tmp/tmpcb4g3qga/job_working_directory/000/2/working/cleaned_sequences/"*".dat" ] ; then cp "/tmp/tmpcb4g3qga/job_working_directory/000/2/working/cleaned_sequences/"*".dat" "/tmp/tmpcb4g3qga/job_working_directory/000/2/outputs/dataset_82681053-1c9b-4cc3-8301-1946931e8f25.dat" ; fi; cd '/tmp/tmpcb4g3qga/job_working_directory/000/2'; +[ "$GALAXY_VIRTUAL_ENV" = "None" ] && GALAXY_VIRTUAL_ENV="$_GALAXY_VIRTUAL_ENV"; _galaxy_setup_environment True; python metadata/set.py; sh -c "exit $return_code" +galaxy.jobs.runners.local DEBUG 2024-02-23 13:08:17,393 [pN:main.1,p:73449,tN:LocalRunner.work_thread-0] (2) executing job script: /tmp/tmpcb4g3qga/job_working_directory/000/2/galaxy_2.sh +galaxy.jobs.runners.util.process_groups DEBUG 2024-02-23 13:09:07,443 [pN:main.1,p:73449,tN:LocalRunner.work_thread-0] check_pg(): No process found in process group 73627 +galaxy.jobs.runners.local DEBUG 2024-02-23 13:09:07,444 [pN:main.1,p:73449,tN:LocalRunner.work_thread-0] execution finished: /tmp/tmpcb4g3qga/job_working_directory/000/2/galaxy_2.sh +galaxy.jobs DEBUG 2024-02-23 13:09:07,468 [pN:main.1,p:73449,tN:LocalRunner.work_thread-0] finish(): Moved /tmp/tmpcb4g3qga/job_working_directory/000/2/outputs/dataset_ad6ed385-7ea5-4304-844d-28eb8215db3a.dat to /tmp/tmpcb4g3qga/files/a/d/6/dataset_ad6ed385-7ea5-4304-844d-28eb8215db3a.dat +galaxy.jobs DEBUG 2024-02-23 13:09:07,468 [pN:main.1,p:73449,tN:LocalRunner.work_thread-0] finish(): Moved /tmp/tmpcb4g3qga/job_working_directory/000/2/outputs/dataset_82681053-1c9b-4cc3-8301-1946931e8f25.dat to /tmp/tmpcb4g3qga/files/8/2/6/dataset_82681053-1c9b-4cc3-8301-1946931e8f25.dat +galaxy.model.metadata DEBUG 2024-02-23 13:09:07,480 [pN:main.1,p:73449,tN:LocalRunner.work_thread-0] loading metadata from file for: HistoryDatasetAssociation 2 +galaxy.model.metadata DEBUG 2024-02-23 13:09:07,487 [pN:main.1,p:73449,tN:LocalRunner.work_thread-0] loading metadata from file for: HistoryDatasetAssociation 3 +galaxy.jobs DEBUG 2024-02-23 13:09:07,518 [pN:main.1,p:73449,tN:LocalRunner.work_thread-0] job_wrapper.finish for job 2 executed (55.826 ms) +multipart.multipart DEBUG 2024-02-23 13:09:08,238 [pN:main.1,p:73449,tN:MainThread] Calling on_field_start with no data +multipart.multipart DEBUG 2024-02-23 13:09:08,238 [pN:main.1,p:73449,tN:MainThread] Calling on_field_name with data[0:4] +multipart.multipart DEBUG 2024-02-23 13:09:08,238 [pN:main.1,p:73449,tN:MainThread] Calling on_field_data with data[5:63] +multipart.multipart DEBUG 2024-02-23 13:09:08,238 [pN:main.1,p:73449,tN:MainThread] Calling on_field_end with no data +multipart.multipart DEBUG 2024-02-23 13:09:08,238 [pN:main.1,p:73449,tN:MainThread] Calling on_end with no data +galaxy.tools INFO 2024-02-23 13:09:08,372 [pN:main.1,p:73449,tN:WSGI_8] Validated and populated state for tool request (7.386 ms) +galaxy.tools.actions.upload DEBUG 2024-02-23 13:09:08,375 [pN:main.1,p:73449,tN:WSGI_8] Persisted uploads (0.123 ms) +galaxy.tools.actions.upload DEBUG 2024-02-23 13:09:08,436 [pN:main.1,p:73449,tN:WSGI_8] Checked uploads (61.223 ms) +galaxy.tools.actions.upload DEBUG 2024-02-23 13:09:08,439 [pN:main.1,p:73449,tN:WSGI_8] Created upload job (2.191 ms) +galaxy.tools.execute DEBUG 2024-02-23 13:09:08,439 [pN:main.1,p:73449,tN:WSGI_8] Tool upload1 created job None (64.062 ms) +galaxy.web_stack.handlers INFO 2024-02-23 13:09:08,452 [pN:main.1,p:73449,tN:WSGI_8] (Job[id=3,tool_id=upload1]) Handler '_default_' assigned using 'HANDLER_ASSIGNMENT_METHODS.DB_SKIP_LOCKED' assignment method +galaxy.tools.execute DEBUG 2024-02-23 13:09:08,456 [pN:main.1,p:73449,tN:WSGI_8] Created 1 job(s) for tool upload1 request (83.236 ms) +galaxy.jobs.mapper DEBUG 2024-02-23 13:09:09,438 [pN:main.1,p:73449,tN:JobHandlerQueue.monitor_thread] (3) Mapped job to destination id: docker_local +galaxy.jobs.handler DEBUG 2024-02-23 13:09:09,441 [pN:main.1,p:73449,tN:JobHandlerQueue.monitor_thread] (3) Dispatching to local runner +galaxy.jobs DEBUG 2024-02-23 13:09:09,447 [pN:main.1,p:73449,tN:JobHandlerQueue.monitor_thread] (3) Persisting job destination (destination id: docker_local) +galaxy.jobs DEBUG 2024-02-23 13:09:09,452 [pN:main.1,p:73449,tN:JobHandlerQueue.monitor_thread] (3) Working directory for job is: /tmp/tmpcb4g3qga/job_working_directory/000/3 +galaxy.jobs.runners DEBUG 2024-02-23 13:09:09,458 [pN:main.1,p:73449,tN:JobHandlerQueue.monitor_thread] Job [3] queued (16.448 ms) +galaxy.jobs.handler INFO 2024-02-23 13:09:09,469 [pN:main.1,p:73449,tN:JobHandlerQueue.monitor_thread] (3) Job dispatched +galaxy.jobs DEBUG 2024-02-23 13:09:09,518 [pN:main.1,p:73449,tN:LocalRunner.work_thread-0] Job wrapper for Job [3] prepared (40.235 ms) +galaxy.tool_util.deps.containers INFO 2024-02-23 13:09:09,518 [pN:main.1,p:73449,tN:LocalRunner.work_thread-0] Checking with container resolver [ExplicitContainerResolver[]] found description [None] +galaxy.tool_util.deps.containers INFO 2024-02-23 13:09:09,519 [pN:main.1,p:73449,tN:LocalRunner.work_thread-0] Checking with container resolver [CachedMulledDockerContainerResolver[namespace=biocontainers]] found description [None] +galaxy.tool_util.deps.containers INFO 2024-02-23 13:09:09,519 [pN:main.1,p:73449,tN:LocalRunner.work_thread-0] Checking with container resolver [CachedMulledDockerContainerResolver[namespace=local]] found description [None] +galaxy.tool_util.deps.containers INFO 2024-02-23 13:09:09,519 [pN:main.1,p:73449,tN:LocalRunner.work_thread-0] Checking with container resolver [MulledDockerContainerResolver[namespace=biocontainers]] found description [None] +galaxy.tool_util.deps.containers INFO 2024-02-23 13:09:09,519 [pN:main.1,p:73449,tN:LocalRunner.work_thread-0] Checking with container resolver [BuildDockerContainerResolver[namespace=local]] found description [None] +galaxy.jobs.command_factory INFO 2024-02-23 13:09:09,545 [pN:main.1,p:73449,tN:LocalRunner.work_thread-0] Built script [/tmp/tmpcb4g3qga/job_working_directory/000/3/tool_script.sh] for tool command [python '/scratch/rico/galaxy/tools/data_source/upload.py' '/scratch/rico/galaxy' '/tmp/tmpcb4g3qga/job_working_directory/000/3/registry.xml' '/tmp/tmpcb4g3qga/job_working_directory/000/3/upload_params.json' '4:/tmp/tmpcb4g3qga/job_working_directory/000/3/outputs/dataset_fc42c29c-8c8a-41a3-8529-54f958c0d9bf_files:/tmp/tmpcb4g3qga/job_working_directory/000/3/outputs/dataset_fc42c29c-8c8a-41a3-8529-54f958c0d9bf.dat'] +galaxy.jobs.runners DEBUG 2024-02-23 13:09:09,571 [pN:main.1,p:73449,tN:LocalRunner.work_thread-0] (3) command is: mkdir -p working outputs configs +if [ -d _working ]; then + rm -rf working/ outputs/ configs/; cp -R _working working; cp -R _outputs outputs; cp -R _configs configs +else + cp -R working _working; cp -R outputs _outputs; cp -R configs _configs +fi +cd working; /bin/bash /tmp/tmpcb4g3qga/job_working_directory/000/3/tool_script.sh > '../outputs/tool_stdout' 2> '../outputs/tool_stderr'; return_code=$?; echo $return_code > /tmp/tmpcb4g3qga/job_working_directory/000/3/galaxy_3.ec; cd '/tmp/tmpcb4g3qga/job_working_directory/000/3'; +[ "$GALAXY_VIRTUAL_ENV" = "None" ] && GALAXY_VIRTUAL_ENV="$_GALAXY_VIRTUAL_ENV"; _galaxy_setup_environment True; python metadata/set.py; sh -c "exit $return_code" +galaxy.jobs.runners.local DEBUG 2024-02-23 13:09:09,593 [pN:main.1,p:73449,tN:LocalRunner.work_thread-0] (3) executing job script: /tmp/tmpcb4g3qga/job_working_directory/000/3/galaxy_3.sh +galaxy.jobs.runners.util.process_groups DEBUG 2024-02-23 13:09:15,780 [pN:main.1,p:73449,tN:LocalRunner.work_thread-0] check_pg(): No process found in process group 73939 +galaxy.jobs.runners.local DEBUG 2024-02-23 13:09:15,780 [pN:main.1,p:73449,tN:LocalRunner.work_thread-0] execution finished: /tmp/tmpcb4g3qga/job_working_directory/000/3/galaxy_3.sh +galaxy.jobs DEBUG 2024-02-23 13:09:15,804 [pN:main.1,p:73449,tN:LocalRunner.work_thread-0] finish(): Moved /tmp/tmpcb4g3qga/job_working_directory/000/3/outputs/dataset_fc42c29c-8c8a-41a3-8529-54f958c0d9bf.dat to /tmp/tmpcb4g3qga/files/f/c/4/dataset_fc42c29c-8c8a-41a3-8529-54f958c0d9bf.dat +galaxy.model.metadata DEBUG 2024-02-23 13:09:15,811 [pN:main.1,p:73449,tN:LocalRunner.work_thread-0] loading metadata from file for: HistoryDatasetAssociation 4 +galaxy.jobs DEBUG 2024-02-23 13:09:15,839 [pN:main.1,p:73449,tN:LocalRunner.work_thread-0] job_wrapper.finish for job 3 executed (41.729 ms) +galaxy.tools INFO 2024-02-23 13:09:15,955 [pN:main.1,p:73449,tN:WSGI_5] Validated and populated state for tool request (4.001 ms) +galaxy.tools.actions INFO 2024-02-23 13:09:15,959 [pN:main.1,p:73449,tN:WSGI_5] Handled output named adaptor_report for tool ncbi_fcs_adaptor (1.009 ms) +galaxy.tools.actions INFO 2024-02-23 13:09:15,960 [pN:main.1,p:73449,tN:WSGI_5] Handled output named clean_fasta for tool ncbi_fcs_adaptor (0.689 ms) +galaxy.tools.actions DEBUG 2024-02-23 13:09:15,960 [pN:main.1,p:73449,tN:WSGI_5] Tool ncbi_fcs_adaptor output adaptor_log: dataset output filter (advanced['optional_log'] is not None and 'adaptor_log' in advanced['optional_log'].split(',')) failed: 'list' object has no attribute 'split' +galaxy.tools.actions INFO 2024-02-23 13:09:15,963 [pN:main.1,p:73449,tN:WSGI_5] Handled output named adaptor_log for tool ncbi_fcs_adaptor (2.806 ms) +galaxy.tools.actions DEBUG 2024-02-23 13:09:15,963 [pN:main.1,p:73449,tN:WSGI_5] Tool ncbi_fcs_adaptor output validate_fasta_log: dataset output filter (advanced['optional_log'] is not None and 'validate_fasta_log' in advanced['optional_log'].split(',')) failed: 'list' object has no attribute 'split' +galaxy.tools.actions INFO 2024-02-23 13:09:15,966 [pN:main.1,p:73449,tN:WSGI_5] Handled output named validate_fasta_log for tool ncbi_fcs_adaptor (2.437 ms) +galaxy.tools.actions INFO 2024-02-23 13:09:15,973 [pN:main.1,p:73449,tN:WSGI_5] Added output datasets to history (7.460 ms) +galaxy.tools.actions INFO 2024-02-23 13:09:15,975 [pN:main.1,p:73449,tN:WSGI_5] Setup for job Job[unflushed,tool_id=ncbi_fcs_adaptor] complete, ready to be enqueued (1.927 ms) +galaxy.tools.execute DEBUG 2024-02-23 13:09:15,975 [pN:main.1,p:73449,tN:WSGI_5] Tool ncbi_fcs_adaptor created job None (18.870 ms) +galaxy.web_stack.handlers INFO 2024-02-23 13:09:15,995 [pN:main.1,p:73449,tN:WSGI_5] (Job[id=4,tool_id=ncbi_fcs_adaptor]) Handler '_default_' assigned using 'HANDLER_ASSIGNMENT_METHODS.DB_SKIP_LOCKED' assignment method +galaxy.tools.execute DEBUG 2024-02-23 13:09:15,999 [pN:main.1,p:73449,tN:WSGI_5] Created 1 job(s) for tool ncbi_fcs_adaptor request (44.554 ms) +galaxy.jobs.mapper DEBUG 2024-02-23 13:09:16,643 [pN:main.1,p:73449,tN:JobHandlerQueue.monitor_thread] (4) Mapped job to destination id: docker_local +galaxy.jobs.handler DEBUG 2024-02-23 13:09:16,646 [pN:main.1,p:73449,tN:JobHandlerQueue.monitor_thread] (4) Dispatching to local runner +galaxy.jobs DEBUG 2024-02-23 13:09:16,652 [pN:main.1,p:73449,tN:JobHandlerQueue.monitor_thread] (4) Persisting job destination (destination id: docker_local) +galaxy.jobs DEBUG 2024-02-23 13:09:16,657 [pN:main.1,p:73449,tN:JobHandlerQueue.monitor_thread] (4) Working directory for job is: /tmp/tmpcb4g3qga/job_working_directory/000/4 +galaxy.jobs.runners DEBUG 2024-02-23 13:09:16,664 [pN:main.1,p:73449,tN:JobHandlerQueue.monitor_thread] Job [4] queued (17.581 ms) +galaxy.jobs.handler INFO 2024-02-23 13:09:16,675 [pN:main.1,p:73449,tN:JobHandlerQueue.monitor_thread] (4) Job dispatched +galaxy.jobs DEBUG 2024-02-23 13:09:16,719 [pN:main.1,p:73449,tN:LocalRunner.work_thread-1] Job wrapper for Job [4] prepared (38.445 ms) +galaxy.tool_util.deps.containers INFO 2024-02-23 13:09:16,720 [pN:main.1,p:73449,tN:LocalRunner.work_thread-1] Checking with container resolver [ExplicitContainerResolver[]] found description [ContainerDescription[identifier=ncbi/fcs-adaptor:0.5.0,type=docker]] +galaxy.jobs.command_factory INFO 2024-02-23 13:09:16,754 [pN:main.1,p:73449,tN:LocalRunner.work_thread-1] Built script [/tmp/tmpcb4g3qga/job_working_directory/000/4/tool_script.sh] for tool command [/app/fcs/bin/av_screen_x -o "$(pwd)" '--prok' '/tmp/tmpcb4g3qga/files/f/c/4/dataset_fc42c29c-8c8a-41a3-8529-54f958c0d9bf.dat'] +galaxy.jobs.runners DEBUG 2024-02-23 13:09:16,801 [pN:main.1,p:73449,tN:LocalRunner.work_thread-1] (4) command is: mkdir -p working outputs configs +if [ -d _working ]; then + rm -rf working/ outputs/ configs/; cp -R _working working; cp -R _outputs outputs; cp -R _configs configs +else + cp -R working _working; cp -R outputs _outputs; cp -R configs _configs +fi +cd working; +_on_exit() { + docker kill 713cf55fdfca4b289b354b6ec6c008f4 &> /dev/null +} +trap _on_exit EXIT +docker inspect ncbi/fcs-adaptor:0.5.0 > /dev/null 2>&1 +[ $? -ne 0 ] && docker pull ncbi/fcs-adaptor:0.5.0 > /dev/null 2>&1 + +docker run -e "GALAXY_SLOTS=$GALAXY_SLOTS" -e "GALAXY_MEMORY_MB=$GALAXY_MEMORY_MB" -e "GALAXY_MEMORY_MB_PER_SLOT=$GALAXY_MEMORY_MB_PER_SLOT" -e "HOME=$HOME" -e "_GALAXY_JOB_HOME_DIR=$_GALAXY_JOB_HOME_DIR" -e "_GALAXY_JOB_TMP_DIR=$_GALAXY_JOB_TMP_DIR" -e "TMPDIR=$TMPDIR" -e "TMP=$TMP" -e "TEMP=$TEMP" --name 713cf55fdfca4b289b354b6ec6c008f4 -v "$_GALAXY_JOB_TMP_DIR:$_GALAXY_JOB_TMP_DIR:rw" -v "$TMPDIR:$TMPDIR:rw" -v "$TMP:$TMP:rw" -v "$TEMP:$TEMP:rw" -v /scratch/rico/galaxy:/scratch/rico/galaxy:ro -v /scratch/rico/galaxytools/tools/ncbi_fcs_adaptor:/scratch/rico/galaxytools/tools/ncbi_fcs_adaptor:ro -v /tmp/tmpcb4g3qga/job_working_directory/000/4:/tmp/tmpcb4g3qga/job_working_directory/000/4:ro -v /tmp/tmpcb4g3qga/job_working_directory/000/4/outputs:/tmp/tmpcb4g3qga/job_working_directory/000/4/outputs:rw -v "$_GALAXY_JOB_HOME_DIR:$_GALAXY_JOB_HOME_DIR:rw" -v /tmp/tmpcb4g3qga/job_working_directory/000/4/working:/tmp/tmpcb4g3qga/job_working_directory/000/4/working:rw -v /tmp/tmpcb4g3qga/files:/tmp/tmpcb4g3qga/files:ro -v /scratch/rico/galaxy/tool-data:/scratch/rico/galaxy/tool-data:ro --cpus ${GALAXY_SLOTS:-1} -w /tmp/tmpcb4g3qga/job_working_directory/000/4/working --rm --user 1028:1028 ncbi/fcs-adaptor:0.5.0 /bin/sh /tmp/tmpcb4g3qga/job_working_directory/000/4/tool_script.sh > '../outputs/tool_stdout' 2> '../outputs/tool_stderr'; return_code=$?; echo $return_code > /tmp/tmpcb4g3qga/job_working_directory/000/4/galaxy_4.ec; +if [ -f "/tmp/tmpcb4g3qga/job_working_directory/000/4/working/fcs_adaptor_report.txt" ] ; then cp "/tmp/tmpcb4g3qga/job_working_directory/000/4/working/fcs_adaptor_report.txt" "/tmp/tmpcb4g3qga/job_working_directory/000/4/outputs/dataset_6a4a8934-d778-4ecd-8c28-14e5ab8e7772.dat" ; fi; +if [ -f "/tmp/tmpcb4g3qga/job_working_directory/000/4/working/cleaned_sequences/"*".dat" ] ; then cp "/tmp/tmpcb4g3qga/job_working_directory/000/4/working/cleaned_sequences/"*".dat" "/tmp/tmpcb4g3qga/job_working_directory/000/4/outputs/dataset_afaf8650-15ba-417a-ab4b-433ba85d77a2.dat" ; fi; +if [ -f "/tmp/tmpcb4g3qga/job_working_directory/000/4/working/fcs_adaptor.log" ] ; then cp "/tmp/tmpcb4g3qga/job_working_directory/000/4/working/fcs_adaptor.log" "/tmp/tmpcb4g3qga/job_working_directory/000/4/outputs/dataset_0617e59a-99eb-4562-b1e2-ea6ae59c8276.dat" ; fi; +if [ -f "/tmp/tmpcb4g3qga/job_working_directory/000/4/working/validate_fasta.txt" ] ; then cp "/tmp/tmpcb4g3qga/job_working_directory/000/4/working/validate_fasta.txt" "/tmp/tmpcb4g3qga/job_working_directory/000/4/outputs/dataset_9c11713d-b338-47c2-b62f-aedd31eaaa4e.dat" ; fi; cd '/tmp/tmpcb4g3qga/job_working_directory/000/4'; +[ "$GALAXY_VIRTUAL_ENV" = "None" ] && GALAXY_VIRTUAL_ENV="$_GALAXY_VIRTUAL_ENV"; _galaxy_setup_environment True; python metadata/set.py; sh -c "exit $return_code" +galaxy.jobs.runners.local DEBUG 2024-02-23 13:09:16,823 [pN:main.1,p:73449,tN:LocalRunner.work_thread-1] (4) executing job script: /tmp/tmpcb4g3qga/job_working_directory/000/4/galaxy_4.sh +galaxy.jobs.runners.util.process_groups DEBUG 2024-02-23 13:10:06,458 [pN:main.1,p:73449,tN:LocalRunner.work_thread-1] check_pg(): No process found in process group 74094 +galaxy.jobs.runners.local DEBUG 2024-02-23 13:10:06,460 [pN:main.1,p:73449,tN:LocalRunner.work_thread-1] execution finished: /tmp/tmpcb4g3qga/job_working_directory/000/4/galaxy_4.sh +galaxy.jobs DEBUG 2024-02-23 13:10:06,484 [pN:main.1,p:73449,tN:LocalRunner.work_thread-1] finish(): Moved /tmp/tmpcb4g3qga/job_working_directory/000/4/outputs/dataset_6a4a8934-d778-4ecd-8c28-14e5ab8e7772.dat to /tmp/tmpcb4g3qga/files/6/a/4/dataset_6a4a8934-d778-4ecd-8c28-14e5ab8e7772.dat +galaxy.jobs DEBUG 2024-02-23 13:10:06,484 [pN:main.1,p:73449,tN:LocalRunner.work_thread-1] finish(): Moved /tmp/tmpcb4g3qga/job_working_directory/000/4/outputs/dataset_afaf8650-15ba-417a-ab4b-433ba85d77a2.dat to /tmp/tmpcb4g3qga/files/a/f/a/dataset_afaf8650-15ba-417a-ab4b-433ba85d77a2.dat +galaxy.jobs DEBUG 2024-02-23 13:10:06,484 [pN:main.1,p:73449,tN:LocalRunner.work_thread-1] finish(): Moved /tmp/tmpcb4g3qga/job_working_directory/000/4/outputs/dataset_0617e59a-99eb-4562-b1e2-ea6ae59c8276.dat to /tmp/tmpcb4g3qga/files/0/6/1/dataset_0617e59a-99eb-4562-b1e2-ea6ae59c8276.dat +galaxy.jobs DEBUG 2024-02-23 13:10:06,484 [pN:main.1,p:73449,tN:LocalRunner.work_thread-1] finish(): Moved /tmp/tmpcb4g3qga/job_working_directory/000/4/outputs/dataset_9c11713d-b338-47c2-b62f-aedd31eaaa4e.dat to /tmp/tmpcb4g3qga/files/9/c/1/dataset_9c11713d-b338-47c2-b62f-aedd31eaaa4e.dat +galaxy.model.metadata DEBUG 2024-02-23 13:10:06,493 [pN:main.1,p:73449,tN:LocalRunner.work_thread-1] loading metadata from file for: HistoryDatasetAssociation 5 +galaxy.model.metadata DEBUG 2024-02-23 13:10:06,497 [pN:main.1,p:73449,tN:LocalRunner.work_thread-1] loading metadata from file for: HistoryDatasetAssociation 6 +galaxy.model.metadata DEBUG 2024-02-23 13:10:06,500 [pN:main.1,p:73449,tN:LocalRunner.work_thread-1] loading metadata from file for: HistoryDatasetAssociation 7 +galaxy.model.metadata DEBUG 2024-02-23 13:10:06,523 [pN:main.1,p:73449,tN:LocalRunner.work_thread-1] loading metadata from file for: HistoryDatasetAssociation 8 +galaxy.jobs DEBUG 2024-02-23 13:10:06,583 [pN:main.1,p:73449,tN:LocalRunner.work_thread-1] job_wrapper.finish for job 4 executed (104.537 ms) +galaxy.queue_worker INFO 2024-02-23 13:10:08,737 [pN:main.1,p:73449,tN:MainThread] Sending reconfigure_watcher control task. +galaxy.util.monitors DEBUG 2024-02-23 13:10:08,752 [pN:main.1,p:73449,tN:MainThread] Joining monitor thread +galaxy.jobs.handler INFO 2024-02-23 13:10:08,752 [pN:main.1,p:73449,tN:MainThread] sending stop signal to worker thread +galaxy.util.monitors DEBUG 2024-02-23 13:10:08,752 [pN:main.1,p:73449,tN:MainThread] Joining monitor thread +galaxy.jobs.handler INFO 2024-02-23 13:10:08,753 [pN:main.1,p:73449,tN:MainThread] job handler queue stopped +galaxy.jobs.runners INFO 2024-02-23 13:10:08,753 [pN:main.1,p:73449,tN:MainThread] LocalRunner: Sending stop signal to 4 job worker threads +galaxy.jobs.runners INFO 2024-02-23 13:10:08,753 [pN:main.1,p:73449,tN:MainThread] Waiting up to 30 seconds for job worker threads to shutdown... +galaxy.jobs.runners DEBUG 2024-02-23 13:10:08,755 [pN:main.1,p:73449,tN:MainThread] Job worker thread terminated: LocalRunner.work_thread-0 +galaxy.jobs.runners INFO 2024-02-23 13:10:08,755 [pN:main.1,p:73449,tN:MainThread] All job worker threads shutdown cleanly +galaxy.jobs.handler INFO 2024-02-23 13:10:08,755 [pN:main.1,p:73449,tN:MainThread] sending stop signal to worker thread +galaxy.util.monitors DEBUG 2024-02-23 13:10:08,755 [pN:main.1,p:73449,tN:MainThread] Joining monitor thread +galaxy.jobs.handler INFO 2024-02-23 13:10:08,755 [pN:main.1,p:73449,tN:MainThread] job handler stop queue stopped +galaxy.jobs DEBUG 2024-02-23 13:13:44,712 [pN:main,p:74649,tN:MainThread] Loading job configuration from /scratch/rico/galaxytools/tools/ncbi_fcs_adaptor/planemo_job_conf.xml +galaxy.jobs DEBUG 2024-02-23 13:13:44,713 [pN:main,p:74649,tN:MainThread] Read job configuration from file: /scratch/rico/galaxytools/tools/ncbi_fcs_adaptor/planemo_job_conf.xml +galaxy.web_stack.handlers INFO 2024-02-23 13:13:44,724 [pN:main,p:74649,tN:MainThread] JobConfiguration: No job handler assignment method is set, defaulting to 'HANDLER_ASSIGNMENT_METHODS.DB_SKIP_LOCKED', set the `assign_with` attribute on <handlers> to override the default +galaxy.jobs INFO 2024-02-23 13:13:44,724 [pN:main,p:74649,tN:MainThread] Job handler assignment methods set to: db-skip-locked +galaxy.web_stack.handlers DEBUG 2024-02-23 13:13:44,725 [pN:main,p:74649,tN:MainThread] default set to child with id or tag 'docker_local' +galaxy.jobs DEBUG 2024-02-23 13:13:44,725 [pN:main,p:74649,tN:MainThread] Done loading job configuration +galaxy.security.vault WARNING 2024-02-23 13:13:44,906 [pN:main,p:74649,tN:MainThread] No vault configured. We recommend defining the vault_config_file setting in galaxy.yml +galaxy.datatypes.registry DEBUG 2024-02-23 13:13:44,948 [pN:main,p:74649,tN:MainThread] Loading datatypes from /scratch/rico/galaxy/lib/galaxy/config/sample/datatypes_conf.xml.sample +galaxy.datatypes.registry DEBUG 2024-02-23 13:13:44,949 [pN:main,p:74649,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension source.h. +galaxy.datatypes.registry DEBUG 2024-02-23 13:13:44,950 [pN:main,p:74649,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension source.c. +galaxy.datatypes.registry DEBUG 2024-02-23 13:13:44,950 [pN:main,p:74649,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension source.cpp. +galaxy.datatypes.registry DEBUG 2024-02-23 13:13:44,950 [pN:main,p:74649,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension source.py. +galaxy.datatypes.registry DEBUG 2024-02-23 13:13:44,950 [pN:main,p:74649,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension source.go. +galaxy.datatypes.registry DEBUG 2024-02-23 13:13:44,950 [pN:main,p:74649,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension source.rs. +galaxy.datatypes.registry DEBUG 2024-02-23 13:13:44,950 [pN:main,p:74649,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension source.cs. +galaxy.datatypes.registry DEBUG 2024-02-23 13:13:44,950 [pN:main,p:74649,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:Binary from the datatype registry for extension hep.root. +galaxy.datatypes.registry DEBUG 2024-02-23 13:13:44,951 [pN:main,p:74649,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:JP2 from the datatype registry for extension jp2. +galaxy.datatypes.registry DEBUG 2024-02-23 13:13:44,951 [pN:main,p:74649,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:Ab1 from the datatype registry for extension ab1. +galaxy.datatypes.registry DEBUG 2024-02-23 13:13:44,951 [pN:main,p:74649,tN:MainThread] Retrieved datatype module galaxy.datatypes.assembly:Amos from the datatype registry for extension afg. +galaxy.datatypes.registry DEBUG 2024-02-23 13:13:44,952 [pN:main,p:74649,tN:MainThread] Retrieved datatype module galaxy.datatypes.goldenpath:GoldenPath from the datatype registry for extension agp. +galaxy.datatypes.registry DEBUG 2024-02-23 13:13:44,953 [pN:main,p:74649,tN:MainThread] Retrieved datatype module galaxy.datatypes.anvio:AnvioComposite from the datatype registry for extension anvio_cog_profile. +galaxy.datatypes.registry DEBUG 2024-02-23 13:13:44,953 [pN:main,p:74649,tN:MainThread] Retrieved datatype module galaxy.datatypes.anvio:AnvioComposite from the datatype registry for extension anvio_composite. +galaxy.datatypes.registry DEBUG 2024-02-23 13:13:44,953 [pN:main,p:74649,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:Data from the datatype registry for extension anvio_classifier. +galaxy.datatypes.registry DEBUG 2024-02-23 13:13:44,953 [pN:main,p:74649,tN:MainThread] Retrieved datatype module galaxy.datatypes.anvio:AnvioContigsDB from the datatype registry for extension anvio_contigs_db. +galaxy.datatypes.registry DEBUG 2024-02-23 13:13:44,953 [pN:main,p:74649,tN:MainThread] Retrieved datatype module galaxy.datatypes.anvio:AnvioDB from the datatype registry for extension anvio_db. +galaxy.datatypes.registry DEBUG 2024-02-23 13:13:44,954 [pN:main,p:74649,tN:MainThread] Retrieved datatype module galaxy.datatypes.anvio:AnvioGenomesDB from the datatype registry for extension anvio_genomes_db. +galaxy.datatypes.registry DEBUG 2024-02-23 13:13:44,954 [pN:main,p:74649,tN:MainThread] Retrieved datatype module galaxy.datatypes.anvio:AnvioPanDB from the datatype registry for extension anvio_pan_db. +galaxy.datatypes.registry DEBUG 2024-02-23 13:13:44,954 [pN:main,p:74649,tN:MainThread] Retrieved datatype module galaxy.datatypes.anvio:AnvioComposite from the datatype registry for extension anvio_pfam_profile. +galaxy.datatypes.registry DEBUG 2024-02-23 13:13:44,954 [pN:main,p:74649,tN:MainThread] Retrieved datatype module galaxy.datatypes.anvio:AnvioProfileDB from the datatype registry for extension anvio_profile_db. +galaxy.datatypes.registry DEBUG 2024-02-23 13:13:44,954 [pN:main,p:74649,tN:MainThread] Retrieved datatype module galaxy.datatypes.anvio:AnvioSamplesDB from the datatype registry for extension anvio_samples_db. +galaxy.datatypes.registry DEBUG 2024-02-23 13:13:44,954 [pN:main,p:74649,tN:MainThread] Retrieved datatype module galaxy.datatypes.text:Json from the datatype registry for extension anvio_state. +galaxy.datatypes.registry DEBUG 2024-02-23 13:13:44,954 [pN:main,p:74649,tN:MainThread] Retrieved datatype module galaxy.datatypes.anvio:AnvioStructureDB from the datatype registry for extension anvio_structure_db. +galaxy.datatypes.registry DEBUG 2024-02-23 13:13:44,954 [pN:main,p:74649,tN:MainThread] Retrieved datatype module galaxy.datatypes.tabular:TSV from the datatype registry for extension anvio_variability. +galaxy.datatypes.registry DEBUG 2024-02-23 13:13:44,955 [pN:main,p:74649,tN:MainThread] Retrieved datatype module galaxy.datatypes.text:Arff from the datatype registry for extension arff. +galaxy.datatypes.registry DEBUG 2024-02-23 13:13:44,955 [pN:main,p:74649,tN:MainThread] Retrieved datatype module galaxy.datatypes.text:Paf from the datatype registry for extension paf. +galaxy.datatypes.registry DEBUG 2024-02-23 13:13:44,955 [pN:main,p:74649,tN:MainThread] Retrieved datatype module galaxy.datatypes.text:Gfa1 from the datatype registry for extension gfa1. +galaxy.datatypes.registry DEBUG 2024-02-23 13:13:44,955 [pN:main,p:74649,tN:MainThread] Retrieved datatype module galaxy.datatypes.text:Gfa2 from the datatype registry for extension gfa2. +galaxy.datatypes.registry DEBUG 2024-02-23 13:13:44,955 [pN:main,p:74649,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:GenericAsn1 from the datatype registry for extension asn1. +galaxy.datatypes.registry DEBUG 2024-02-23 13:13:44,955 [pN:main,p:74649,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:GenericAsn1Binary from the datatype registry for extension asn1-binary. +galaxy.datatypes.registry DEBUG 2024-02-23 13:13:44,955 [pN:main,p:74649,tN:MainThread] Retrieved datatype module galaxy.datatypes.sequence:Axt from the datatype registry for extension axt. +galaxy.datatypes.registry DEBUG 2024-02-23 13:13:44,955 [pN:main,p:74649,tN:MainThread] Retrieved datatype module galaxy.datatypes.tabular:FeatureLocationIndex from the datatype registry for extension fli. +galaxy.datatypes.registry DEBUG 2024-02-23 13:13:44,955 [pN:main,p:74649,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:Bam from the datatype registry for extension bam. +galaxy.datatypes.registry DEBUG 2024-02-23 13:13:44,956 [pN:main,p:74649,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:Binary from the datatype registry for extension bai. +galaxy.datatypes.registry DEBUG 2024-02-23 13:13:44,956 [pN:main,p:74649,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:BamInputSorted from the datatype registry for extension qname_input_sorted.bam. +galaxy.datatypes.registry DEBUG 2024-02-23 13:13:44,956 [pN:main,p:74649,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:BamQuerynameSorted from the datatype registry for extension qname_sorted.bam. +galaxy.datatypes.registry DEBUG 2024-02-23 13:13:44,956 [pN:main,p:74649,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:BamNative from the datatype registry for extension unsorted.bam. +galaxy.datatypes.registry DEBUG 2024-02-23 13:13:44,956 [pN:main,p:74649,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:ProBam from the datatype registry for extension probam. +galaxy.datatypes.registry DEBUG 2024-02-23 13:13:44,956 [pN:main,p:74649,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:CRAM from the datatype registry for extension cram. +galaxy.datatypes.registry DEBUG 2024-02-23 13:13:44,956 [pN:main,p:74649,tN:MainThread] Retrieved datatype module galaxy.datatypes.interval:Bed from the datatype registry for extension bed. +galaxy.datatypes.registry DEBUG 2024-02-23 13:13:44,956 [pN:main,p:74649,tN:MainThread] Retrieved datatype module galaxy.datatypes.interval:BedGraph from the datatype registry for extension bedgraph. +galaxy.datatypes.registry DEBUG 2024-02-23 13:13:44,957 [pN:main,p:74649,tN:MainThread] Retrieved datatype module galaxy.datatypes.interval:BedStrict from the datatype registry for extension bedstrict. +galaxy.datatypes.registry DEBUG 2024-02-23 13:13:44,957 [pN:main,p:74649,tN:MainThread] Retrieved datatype module galaxy.datatypes.interval:Bed6 from the datatype registry for extension bed6. +galaxy.datatypes.registry DEBUG 2024-02-23 13:13:44,957 [pN:main,p:74649,tN:MainThread] Retrieved datatype module galaxy.datatypes.interval:Bed12 from the datatype registry for extension bed12. +galaxy.datatypes.registry DEBUG 2024-02-23 13:13:44,957 [pN:main,p:74649,tN:MainThread] Retrieved datatype module galaxy.datatypes.interval:ProBed from the datatype registry for extension probed. +galaxy.datatypes.registry DEBUG 2024-02-23 13:13:44,957 [pN:main,p:74649,tN:MainThread] Retrieved datatype module galaxy.datatypes.chrominfo:ChromInfo from the datatype registry for extension len. +galaxy.datatypes.registry DEBUG 2024-02-23 13:13:44,958 [pN:main,p:74649,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:DAA from the datatype registry for extension daa. +galaxy.datatypes.registry DEBUG 2024-02-23 13:13:44,958 [pN:main,p:74649,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:RMA6 from the datatype registry for extension rma6. +galaxy.datatypes.registry DEBUG 2024-02-23 13:13:44,958 [pN:main,p:74649,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:DMND from the datatype registry for extension dmnd. +galaxy.datatypes.registry DEBUG 2024-02-23 13:13:44,958 [pN:main,p:74649,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:Parquet from the datatype registry for extension parquet. +galaxy.datatypes.registry DEBUG 2024-02-23 13:13:44,958 [pN:main,p:74649,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:Idat from the datatype registry for extension idat. +galaxy.datatypes.registry DEBUG 2024-02-23 13:13:44,958 [pN:main,p:74649,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:BigBed from the datatype registry for extension bigbed. +galaxy.datatypes.registry DEBUG 2024-02-23 13:13:44,958 [pN:main,p:74649,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:BigWig from the datatype registry for extension bigwig. +galaxy.datatypes.registry DEBUG 2024-02-23 13:13:44,958 [pN:main,p:74649,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:Binary from the datatype registry for extension cxb. +galaxy.datatypes.registry DEBUG 2024-02-23 13:13:44,958 [pN:main,p:74649,tN:MainThread] Retrieved datatype module galaxy.datatypes.interval:ChromatinInteractions from the datatype registry for extension chrint. +galaxy.datatypes.registry DEBUG 2024-02-23 13:13:44,958 [pN:main,p:74649,tN:MainThread] Retrieved datatype module galaxy.datatypes.tabular:CSV from the datatype registry for extension csv. +galaxy.datatypes.registry DEBUG 2024-02-23 13:13:44,959 [pN:main,p:74649,tN:MainThread] Retrieved datatype module galaxy.datatypes.tabular:TSV from the datatype registry for extension tsv. +galaxy.datatypes.registry DEBUG 2024-02-23 13:13:44,959 [pN:main,p:74649,tN:MainThread] Retrieved datatype module galaxy.datatypes.tabular:TSV from the datatype registry for extension intermine_tabular. +galaxy.datatypes.registry DEBUG 2024-02-23 13:13:44,959 [pN:main,p:74649,tN:MainThread] Retrieved datatype module galaxy.datatypes.interval:CustomTrack from the datatype registry for extension customtrack. +galaxy.datatypes.registry DEBUG 2024-02-23 13:13:44,959 [pN:main,p:74649,tN:MainThread] Retrieved datatype module galaxy.datatypes.ngsindex:BowtieColorIndex from the datatype registry for extension bowtie_color_index. +galaxy.datatypes.registry DEBUG 2024-02-23 13:13:44,960 [pN:main,p:74649,tN:MainThread] Retrieved datatype module galaxy.datatypes.ngsindex:BowtieBaseIndex from the datatype registry for extension bowtie_base_index. +galaxy.datatypes.registry DEBUG 2024-02-23 13:13:44,960 [pN:main,p:74649,tN:MainThread] Retrieved datatype module galaxy.datatypes.sequence:csFasta from the datatype registry for extension csfasta. +galaxy.datatypes.registry DEBUG 2024-02-23 13:13:44,960 [pN:main,p:74649,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:Data from the datatype registry for extension data. +galaxy.datatypes.registry DEBUG 2024-02-23 13:13:44,960 [pN:main,p:74649,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:Binary from the datatype registry for extension gz. +galaxy.datatypes.registry DEBUG 2024-02-23 13:13:44,960 [pN:main,p:74649,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:Binary from the datatype registry for extension binary. +galaxy.datatypes.registry DEBUG 2024-02-23 13:13:44,960 [pN:main,p:74649,tN:MainThread] Retrieved datatype module galaxy.datatypes.text:Json from the datatype registry for extension d3_hierarchy. +galaxy.datatypes.registry DEBUG 2024-02-23 13:13:44,960 [pN:main,p:74649,tN:MainThread] Retrieved datatype module galaxy.datatypes.text:ImgtJson from the datatype registry for extension imgt.json. +galaxy.datatypes.registry DEBUG 2024-02-23 13:13:44,960 [pN:main,p:74649,tN:MainThread] Retrieved datatype module galaxy.datatypes.text:GeoJson from the datatype registry for extension geojson. +galaxy.datatypes.registry DEBUG 2024-02-23 13:13:44,960 [pN:main,p:74649,tN:MainThread] Retrieved datatype module galaxy.datatypes.text:Json from the datatype registry for extension data_manager_json. +galaxy.datatypes.registry DEBUG 2024-02-23 13:13:44,961 [pN:main,p:74649,tN:MainThread] Retrieved datatype module galaxy.datatypes.sequence:DotBracket from the datatype registry for extension dbn. +galaxy.datatypes.registry DEBUG 2024-02-23 13:13:44,961 [pN:main,p:74649,tN:MainThread] Retrieved datatype module galaxy.datatypes.tabular:Tabular from the datatype registry for extension fai. +galaxy.datatypes.registry DEBUG 2024-02-23 13:13:44,961 [pN:main,p:74649,tN:MainThread] Retrieved datatype module galaxy.datatypes.sequence:Fasta from the datatype registry for extension fasta. +galaxy.datatypes.registry DEBUG 2024-02-23 13:13:44,961 [pN:main,p:74649,tN:MainThread] Retrieved datatype module galaxy.datatypes.sequence:Fastg from the datatype registry for extension fastg. +galaxy.datatypes.registry DEBUG 2024-02-23 13:13:44,961 [pN:main,p:74649,tN:MainThread] Retrieved datatype module galaxy.datatypes.sequence:Fastq from the datatype registry for extension fastq. +galaxy.datatypes.registry DEBUG 2024-02-23 13:13:44,961 [pN:main,p:74649,tN:MainThread] Retrieved datatype module galaxy.datatypes.sequence:FastqSanger from the datatype registry for extension fastqsanger. +galaxy.datatypes.registry DEBUG 2024-02-23 13:13:44,962 [pN:main,p:74649,tN:MainThread] Retrieved datatype module galaxy.datatypes.sequence:FastqSolexa from the datatype registry for extension fastqsolexa. +galaxy.datatypes.registry DEBUG 2024-02-23 13:13:44,962 [pN:main,p:74649,tN:MainThread] Retrieved datatype module galaxy.datatypes.sequence:FastqCSSanger from the datatype registry for extension fastqcssanger. +galaxy.datatypes.registry DEBUG 2024-02-23 13:13:44,962 [pN:main,p:74649,tN:MainThread] Retrieved datatype module galaxy.datatypes.sequence:FastqIllumina from the datatype registry for extension fastqillumina. +galaxy.datatypes.registry DEBUG 2024-02-23 13:13:44,962 [pN:main,p:74649,tN:MainThread] Retrieved datatype module galaxy.datatypes.sequence:SequenceSplitLocations from the datatype registry for extension fqtoc. +galaxy.datatypes.registry DEBUG 2024-02-23 13:13:44,962 [pN:main,p:74649,tN:MainThread] Retrieved datatype module galaxy.datatypes.tabular:Eland from the datatype registry for extension eland. +galaxy.datatypes.registry DEBUG 2024-02-23 13:13:44,963 [pN:main,p:74649,tN:MainThread] Retrieved datatype module galaxy.datatypes.tabular:ElandMulti from the datatype registry for extension elandmulti. +galaxy.datatypes.registry DEBUG 2024-02-23 13:13:44,963 [pN:main,p:74649,tN:MainThread] Retrieved datatype module galaxy.datatypes.tracks:GeneTrack from the datatype registry for extension genetrack. +galaxy.datatypes.registry DEBUG 2024-02-23 13:13:44,963 [pN:main,p:74649,tN:MainThread] Retrieved datatype module galaxy.datatypes.interval:Gff from the datatype registry for extension gff. +galaxy.datatypes.registry DEBUG 2024-02-23 13:13:44,963 [pN:main,p:74649,tN:MainThread] Retrieved datatype module galaxy.datatypes.interval:Gff3 from the datatype registry for extension gff3. +galaxy.datatypes.registry DEBUG 2024-02-23 13:13:44,963 [pN:main,p:74649,tN:MainThread] Retrieved datatype module galaxy.datatypes.images:Gif from the datatype registry for extension gif. +galaxy.datatypes.registry DEBUG 2024-02-23 13:13:44,963 [pN:main,p:74649,tN:MainThread] Retrieved datatype module galaxy.datatypes.images:Gmaj from the datatype registry for extension gmaj.zip. +galaxy.datatypes.registry DEBUG 2024-02-23 13:13:44,963 [pN:main,p:74649,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension graph_dot. +galaxy.datatypes.registry DEBUG 2024-02-23 13:13:44,964 [pN:main,p:74649,tN:MainThread] Retrieved datatype module galaxy.datatypes.interval:Gtf from the datatype registry for extension gtf. +galaxy.datatypes.registry DEBUG 2024-02-23 13:13:44,964 [pN:main,p:74649,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:Binary from the datatype registry for extension toolshed.gz. +galaxy.datatypes.registry DEBUG 2024-02-23 13:13:44,964 [pN:main,p:74649,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:Binary from the datatype registry for extension hdf4. +galaxy.datatypes.registry DEBUG 2024-02-23 13:13:44,964 [pN:main,p:74649,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:H5 from the datatype registry for extension h5. +galaxy.datatypes.registry DEBUG 2024-02-23 13:13:44,964 [pN:main,p:74649,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:H5 from the datatype registry for extension scool. +galaxy.datatypes.registry DEBUG 2024-02-23 13:13:44,964 [pN:main,p:74649,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:Grib from the datatype registry for extension grib. +galaxy.datatypes.registry DEBUG 2024-02-23 13:13:44,964 [pN:main,p:74649,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:Loom from the datatype registry for extension loom. +galaxy.datatypes.registry DEBUG 2024-02-23 13:13:44,964 [pN:main,p:74649,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:Anndata from the datatype registry for extension h5ad. +galaxy.datatypes.registry DEBUG 2024-02-23 13:13:44,964 [pN:main,p:74649,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:Visium from the datatype registry for extension visium.tar.gz. +galaxy.datatypes.registry DEBUG 2024-02-23 13:13:44,965 [pN:main,p:74649,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:H5 from the datatype registry for extension mz5. +galaxy.datatypes.registry DEBUG 2024-02-23 13:13:44,965 [pN:main,p:74649,tN:MainThread] Retrieved datatype module galaxy.datatypes.text:Json from the datatype registry for extension hyphy_results.json. +galaxy.datatypes.registry DEBUG 2024-02-23 13:13:44,965 [pN:main,p:74649,tN:MainThread] Retrieved datatype module galaxy.datatypes.text:Json from the datatype registry for extension hivtrace. +galaxy.datatypes.registry DEBUG 2024-02-23 13:13:44,965 [pN:main,p:74649,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:Cool from the datatype registry for extension cool. +galaxy.datatypes.registry DEBUG 2024-02-23 13:13:44,965 [pN:main,p:74649,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:MCool from the datatype registry for extension mcool. +galaxy.datatypes.registry DEBUG 2024-02-23 13:13:44,965 [pN:main,p:74649,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:H5MLM from the datatype registry for extension h5mlm. +galaxy.datatypes.registry DEBUG 2024-02-23 13:13:44,965 [pN:main,p:74649,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:LudwigModel from the datatype registry for extension ludwig_model. +galaxy.datatypes.registry DEBUG 2024-02-23 13:13:44,965 [pN:main,p:74649,tN:MainThread] Retrieved datatype module galaxy.datatypes.text:Html from the datatype registry for extension html. +galaxy.datatypes.registry DEBUG 2024-02-23 13:13:44,965 [pN:main,p:74649,tN:MainThread] Retrieved datatype module galaxy.datatypes.text:Html from the datatype registry for extension ludwig_report.html. +galaxy.datatypes.registry DEBUG 2024-02-23 13:13:44,966 [pN:main,p:74649,tN:MainThread] Retrieved datatype module galaxy.datatypes.interval:Interval from the datatype registry for extension interval. +galaxy.datatypes.registry DEBUG 2024-02-23 13:13:44,966 [pN:main,p:74649,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:Binary from the datatype registry for extension jellyfish. +galaxy.datatypes.registry DEBUG 2024-02-23 13:13:44,966 [pN:main,p:74649,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:Binary from the datatype registry for extension ktab. +galaxy.datatypes.registry DEBUG 2024-02-23 13:13:44,966 [pN:main,p:74649,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:Binary from the datatype registry for extension hist. +galaxy.datatypes.registry DEBUG 2024-02-23 13:13:44,966 [pN:main,p:74649,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:Binary from the datatype registry for extension prof. +galaxy.datatypes.registry DEBUG 2024-02-23 13:13:45,048 [pN:main,p:74649,tN:MainThread] Retrieved datatype module galaxy.datatypes.isa:IsaTab from the datatype registry for extension isa-tab. +galaxy.datatypes.registry DEBUG 2024-02-23 13:13:45,049 [pN:main,p:74649,tN:MainThread] Retrieved datatype module galaxy.datatypes.isa:IsaJson from the datatype registry for extension isa-json. +galaxy.datatypes.registry DEBUG 2024-02-23 13:13:45,049 [pN:main,p:74649,tN:MainThread] Retrieved datatype module galaxy.datatypes.tabular:Tabular from the datatype registry for extension picard_interval_list. +galaxy.datatypes.registry DEBUG 2024-02-23 13:13:45,049 [pN:main,p:74649,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension gatk_interval. +galaxy.datatypes.registry DEBUG 2024-02-23 13:13:45,049 [pN:main,p:74649,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension gatk_report. +galaxy.datatypes.registry DEBUG 2024-02-23 13:13:45,049 [pN:main,p:74649,tN:MainThread] Retrieved datatype module galaxy.datatypes.tabular:Tabular from the datatype registry for extension gatk_dbsnp. +galaxy.datatypes.registry DEBUG 2024-02-23 13:13:45,049 [pN:main,p:74649,tN:MainThread] Retrieved datatype module galaxy.datatypes.tabular:Tabular from the datatype registry for extension gatk_tranche. +galaxy.datatypes.registry DEBUG 2024-02-23 13:13:45,049 [pN:main,p:74649,tN:MainThread] Retrieved datatype module galaxy.datatypes.tabular:Tabular from the datatype registry for extension gatk_recal. +galaxy.datatypes.registry DEBUG 2024-02-23 13:13:45,050 [pN:main,p:74649,tN:MainThread] Retrieved datatype module galaxy.datatypes.tabular:Tabular from the datatype registry for extension cnn. +galaxy.datatypes.registry DEBUG 2024-02-23 13:13:45,050 [pN:main,p:74649,tN:MainThread] Retrieved datatype module galaxy.datatypes.tabular:Tabular from the datatype registry for extension cns. +galaxy.datatypes.registry DEBUG 2024-02-23 13:13:45,050 [pN:main,p:74649,tN:MainThread] Retrieved datatype module galaxy.datatypes.tabular:Tabular from the datatype registry for extension cnr. +galaxy.datatypes.registry DEBUG 2024-02-23 13:13:45,050 [pN:main,p:74649,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension hhr. +galaxy.datatypes.registry DEBUG 2024-02-23 13:13:45,050 [pN:main,p:74649,tN:MainThread] Retrieved datatype module galaxy.datatypes.images:Jpg from the datatype registry for extension jpg. +galaxy.datatypes.registry DEBUG 2024-02-23 13:13:45,050 [pN:main,p:74649,tN:MainThread] Retrieved datatype module galaxy.datatypes.images:Tiff from the datatype registry for extension tiff. +galaxy.datatypes.registry DEBUG 2024-02-23 13:13:45,051 [pN:main,p:74649,tN:MainThread] Retrieved datatype module galaxy.datatypes.images:Tiff from the datatype registry for extension tf2. +galaxy.datatypes.registry DEBUG 2024-02-23 13:13:45,051 [pN:main,p:74649,tN:MainThread] Retrieved datatype module galaxy.datatypes.images:Tiff from the datatype registry for extension tf8. +galaxy.datatypes.registry DEBUG 2024-02-23 13:13:45,051 [pN:main,p:74649,tN:MainThread] Retrieved datatype module galaxy.datatypes.images:Tiff from the datatype registry for extension btf. +galaxy.datatypes.registry DEBUG 2024-02-23 13:13:45,051 [pN:main,p:74649,tN:MainThread] Retrieved datatype module galaxy.datatypes.images:Tiff from the datatype registry for extension tif. +galaxy.datatypes.registry DEBUG 2024-02-23 13:13:45,051 [pN:main,p:74649,tN:MainThread] Retrieved datatype module galaxy.datatypes.images:Tiff from the datatype registry for extension svs. +galaxy.datatypes.registry DEBUG 2024-02-23 13:13:45,051 [pN:main,p:74649,tN:MainThread] Retrieved datatype module galaxy.datatypes.images:Tiff from the datatype registry for extension scn. +galaxy.datatypes.registry DEBUG 2024-02-23 13:13:45,051 [pN:main,p:74649,tN:MainThread] Retrieved datatype module galaxy.datatypes.images:Tiff from the datatype registry for extension bif. +galaxy.datatypes.registry DEBUG 2024-02-23 13:13:45,051 [pN:main,p:74649,tN:MainThread] Retrieved datatype module galaxy.datatypes.images:OMETiff from the datatype registry for extension ome.tiff. +galaxy.datatypes.registry DEBUG 2024-02-23 13:13:45,051 [pN:main,p:74649,tN:MainThread] Retrieved datatype module galaxy.datatypes.images:Hamamatsu from the datatype registry for extension vms. +galaxy.datatypes.registry DEBUG 2024-02-23 13:13:45,052 [pN:main,p:74649,tN:MainThread] Retrieved datatype module galaxy.datatypes.images:Hamamatsu from the datatype registry for extension vmu. +galaxy.datatypes.registry DEBUG 2024-02-23 13:13:45,052 [pN:main,p:74649,tN:MainThread] Retrieved datatype module galaxy.datatypes.images:Hamamatsu from the datatype registry for extension ndpi. +galaxy.datatypes.registry DEBUG 2024-02-23 13:13:45,052 [pN:main,p:74649,tN:MainThread] Retrieved datatype module galaxy.datatypes.images:Mirax from the datatype registry for extension mrxs. +galaxy.datatypes.registry DEBUG 2024-02-23 13:13:45,052 [pN:main,p:74649,tN:MainThread] Retrieved datatype module galaxy.datatypes.images:Sakura from the datatype registry for extension svslide. +galaxy.datatypes.registry DEBUG 2024-02-23 13:13:45,052 [pN:main,p:74649,tN:MainThread] Retrieved datatype module galaxy.datatypes.images:Bmp from the datatype registry for extension bmp. +galaxy.datatypes.registry DEBUG 2024-02-23 13:13:45,052 [pN:main,p:74649,tN:MainThread] Retrieved datatype module galaxy.datatypes.images:Im from the datatype registry for extension im. +galaxy.datatypes.registry DEBUG 2024-02-23 13:13:45,052 [pN:main,p:74649,tN:MainThread] Retrieved datatype module galaxy.datatypes.images:Pcd from the datatype registry for extension pcd. +galaxy.datatypes.registry DEBUG 2024-02-23 13:13:45,052 [pN:main,p:74649,tN:MainThread] Retrieved datatype module galaxy.datatypes.images:Pcx from the datatype registry for extension pcx. +galaxy.datatypes.registry DEBUG 2024-02-23 13:13:45,052 [pN:main,p:74649,tN:MainThread] Retrieved datatype module galaxy.datatypes.images:Ppm from the datatype registry for extension ppm. +galaxy.datatypes.registry DEBUG 2024-02-23 13:13:45,052 [pN:main,p:74649,tN:MainThread] Retrieved datatype module galaxy.datatypes.images:Psd from the datatype registry for extension psd. +galaxy.datatypes.registry DEBUG 2024-02-23 13:13:45,053 [pN:main,p:74649,tN:MainThread] Retrieved datatype module galaxy.datatypes.images:Xbm from the datatype registry for extension xbm. +galaxy.datatypes.registry DEBUG 2024-02-23 13:13:45,053 [pN:main,p:74649,tN:MainThread] Retrieved datatype module galaxy.datatypes.images:Xpm from the datatype registry for extension xpm. +galaxy.datatypes.registry DEBUG 2024-02-23 13:13:45,053 [pN:main,p:74649,tN:MainThread] Retrieved datatype module galaxy.datatypes.images:Rgb from the datatype registry for extension rgb. +galaxy.datatypes.registry DEBUG 2024-02-23 13:13:45,053 [pN:main,p:74649,tN:MainThread] Retrieved datatype module galaxy.datatypes.images:Pbm from the datatype registry for extension pbm. +galaxy.datatypes.registry DEBUG 2024-02-23 13:13:45,053 [pN:main,p:74649,tN:MainThread] Retrieved datatype module galaxy.datatypes.images:Pgm from the datatype registry for extension pgm. +galaxy.datatypes.registry DEBUG 2024-02-23 13:13:45,053 [pN:main,p:74649,tN:MainThread] Retrieved datatype module galaxy.datatypes.images:Nrrd from the datatype registry for extension nrrd. +galaxy.datatypes.registry DEBUG 2024-02-23 13:13:45,053 [pN:main,p:74649,tN:MainThread] Retrieved datatype module galaxy.datatypes.images:Nrrd from the datatype registry for extension nhdr. +galaxy.datatypes.registry DEBUG 2024-02-23 13:13:45,053 [pN:main,p:74649,tN:MainThread] Retrieved datatype module galaxy.datatypes.sequence:RNADotPlotMatrix from the datatype registry for extension rna_eps. +galaxy.datatypes.registry DEBUG 2024-02-23 13:13:45,054 [pN:main,p:74649,tN:MainThread] Retrieved datatype module galaxy.datatypes.qiime2:QIIME2Artifact from the datatype registry for extension qza. +galaxy.datatypes.registry DEBUG 2024-02-23 13:13:45,054 [pN:main,p:74649,tN:MainThread] Retrieved datatype module galaxy.datatypes.qiime2:QIIME2Visualization from the datatype registry for extension qzv. +galaxy.datatypes.registry DEBUG 2024-02-23 13:13:45,054 [pN:main,p:74649,tN:MainThread] Retrieved datatype module galaxy.datatypes.qiime2:QIIME2Metadata from the datatype registry for extension qiime2.tabular. +galaxy.datatypes.registry DEBUG 2024-02-23 13:13:45,054 [pN:main,p:74649,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:CompressedZipArchive from the datatype registry for extension zip. +galaxy.datatypes.registry DEBUG 2024-02-23 13:13:45,055 [pN:main,p:74649,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:CompressedZipArchive from the datatype registry for extension ncbi_genome_dataset.zip. +galaxy.datatypes.registry DEBUG 2024-02-23 13:13:45,055 [pN:main,p:74649,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:CompressedArchive from the datatype registry for extension tar. +galaxy.datatypes.registry DEBUG 2024-02-23 13:13:45,055 [pN:main,p:74649,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:Directory from the datatype registry for extension directory. +galaxy.datatypes.registry DEBUG 2024-02-23 13:13:45,055 [pN:main,p:74649,tN:MainThread] Retrieved datatype module galaxy.datatypes.text:Yaml from the datatype registry for extension yaml. +galaxy.datatypes.registry DEBUG 2024-02-23 13:13:45,055 [pN:main,p:74649,tN:MainThread] Retrieved datatype module galaxy.datatypes.tabular:Tabular from the datatype registry for extension mrm. +galaxy.datatypes.registry DEBUG 2024-02-23 13:13:45,057 [pN:main,p:74649,tN:MainThread] Retrieved datatype module galaxy.datatypes.proteomics:Dta from the datatype registry for extension dta. +galaxy.datatypes.registry DEBUG 2024-02-23 13:13:45,057 [pN:main,p:74649,tN:MainThread] Retrieved datatype module galaxy.datatypes.proteomics:Dta2d from the datatype registry for extension dta2d. +galaxy.datatypes.registry DEBUG 2024-02-23 13:13:45,058 [pN:main,p:74649,tN:MainThread] Retrieved datatype module galaxy.datatypes.proteomics:Edta from the datatype registry for extension edta. +galaxy.datatypes.registry DEBUG 2024-02-23 13:13:45,058 [pN:main,p:74649,tN:MainThread] Retrieved datatype module galaxy.datatypes.proteomics:PepXml from the datatype registry for extension pepxml. +galaxy.datatypes.registry DEBUG 2024-02-23 13:13:45,058 [pN:main,p:74649,tN:MainThread] Retrieved datatype module galaxy.datatypes.proteomics:PepXml from the datatype registry for extension raw_pepxml. +galaxy.datatypes.registry DEBUG 2024-02-23 13:13:45,058 [pN:main,p:74649,tN:MainThread] Retrieved datatype module galaxy.datatypes.proteomics:PepXml from the datatype registry for extension peptideprophet_pepxml. +galaxy.datatypes.registry DEBUG 2024-02-23 13:13:45,058 [pN:main,p:74649,tN:MainThread] Retrieved datatype module galaxy.datatypes.proteomics:PepXml from the datatype registry for extension interprophet_pepxml. +galaxy.datatypes.registry DEBUG 2024-02-23 13:13:45,058 [pN:main,p:74649,tN:MainThread] Retrieved datatype module galaxy.datatypes.proteomics:ProtXML from the datatype registry for extension protxml. +galaxy.datatypes.registry DEBUG 2024-02-23 13:13:45,058 [pN:main,p:74649,tN:MainThread] Retrieved datatype module galaxy.datatypes.proteomics:ParamXml from the datatype registry for extension paramxml. +galaxy.datatypes.registry DEBUG 2024-02-23 13:13:45,058 [pN:main,p:74649,tN:MainThread] Retrieved datatype module galaxy.datatypes.proteomics:Kroenik from the datatype registry for extension kroenik. +galaxy.datatypes.registry DEBUG 2024-02-23 13:13:45,058 [pN:main,p:74649,tN:MainThread] Retrieved datatype module galaxy.datatypes.proteomics:PepList from the datatype registry for extension peplist. +galaxy.datatypes.registry DEBUG 2024-02-23 13:13:45,059 [pN:main,p:74649,tN:MainThread] Retrieved datatype module galaxy.datatypes.proteomics:PSMS from the datatype registry for extension psms. +galaxy.datatypes.registry DEBUG 2024-02-23 13:13:45,059 [pN:main,p:74649,tN:MainThread] Retrieved datatype module galaxy.datatypes.proteomics:PepXmlReport from the datatype registry for extension pepxml.tsv. +galaxy.datatypes.registry DEBUG 2024-02-23 13:13:45,059 [pN:main,p:74649,tN:MainThread] Retrieved datatype module galaxy.datatypes.proteomics:ProtXmlReport from the datatype registry for extension protxml.tsv. +galaxy.datatypes.registry DEBUG 2024-02-23 13:13:45,059 [pN:main,p:74649,tN:MainThread] Retrieved datatype module galaxy.datatypes.proteomics:MascotDat from the datatype registry for extension mascotdat. +galaxy.datatypes.registry DEBUG 2024-02-23 13:13:45,059 [pN:main,p:74649,tN:MainThread] Retrieved datatype module galaxy.datatypes.proteomics:MzIdentML from the datatype registry for extension mzid. +galaxy.datatypes.registry DEBUG 2024-02-23 13:13:45,059 [pN:main,p:74649,tN:MainThread] Retrieved datatype module galaxy.datatypes.proteomics:IdXML from the datatype registry for extension idxml. +galaxy.datatypes.registry DEBUG 2024-02-23 13:13:45,059 [pN:main,p:74649,tN:MainThread] Retrieved datatype module galaxy.datatypes.proteomics:TandemXML from the datatype registry for extension tandem. +galaxy.datatypes.registry DEBUG 2024-02-23 13:13:45,059 [pN:main,p:74649,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension sirius.ms. +galaxy.datatypes.registry DEBUG 2024-02-23 13:13:45,059 [pN:main,p:74649,tN:MainThread] Retrieved datatype module galaxy.datatypes.proteomics:ThermoRAW from the datatype registry for extension thermo.raw. +galaxy.datatypes.registry DEBUG 2024-02-23 13:13:45,059 [pN:main,p:74649,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:BafTar from the datatype registry for extension brukerbaf.d.tar. +galaxy.datatypes.registry DEBUG 2024-02-23 13:13:45,060 [pN:main,p:74649,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:YepTar from the datatype registry for extension agilentbrukeryep.d.tar. +galaxy.datatypes.registry DEBUG 2024-02-23 13:13:45,060 [pN:main,p:74649,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:TdfTar from the datatype registry for extension brukertdf.d.tar. +galaxy.datatypes.registry DEBUG 2024-02-23 13:13:45,060 [pN:main,p:74649,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:MassHunterTar from the datatype registry for extension agilentmasshunter.d.tar. +galaxy.datatypes.registry DEBUG 2024-02-23 13:13:45,060 [pN:main,p:74649,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:MassLynxTar from the datatype registry for extension watersmasslynx.raw.tar. +galaxy.datatypes.registry DEBUG 2024-02-23 13:13:45,060 [pN:main,p:74649,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:WiffTar from the datatype registry for extension wiff.tar. +galaxy.datatypes.registry DEBUG 2024-02-23 13:13:45,060 [pN:main,p:74649,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:Wiff2Tar from the datatype registry for extension wiff2.tar. +galaxy.datatypes.registry DEBUG 2024-02-23 13:13:45,060 [pN:main,p:74649,tN:MainThread] Retrieved datatype module galaxy.datatypes.proteomics:MascotXML from the datatype registry for extension mascotxml. +galaxy.datatypes.registry DEBUG 2024-02-23 13:13:45,060 [pN:main,p:74649,tN:MainThread] Retrieved datatype module galaxy.datatypes.proteomics:MzTab from the datatype registry for extension mztab. +galaxy.datatypes.registry DEBUG 2024-02-23 13:13:45,060 [pN:main,p:74649,tN:MainThread] Retrieved datatype module galaxy.datatypes.proteomics:MzTab2 from the datatype registry for extension mztab2. +galaxy.datatypes.registry DEBUG 2024-02-23 13:13:45,060 [pN:main,p:74649,tN:MainThread] Retrieved datatype module galaxy.datatypes.proteomics:MzML from the datatype registry for extension mzml. +galaxy.datatypes.registry DEBUG 2024-02-23 13:13:45,060 [pN:main,p:74649,tN:MainThread] Retrieved datatype module galaxy.datatypes.proteomics:NmrML from the datatype registry for extension nmrml. +galaxy.datatypes.registry DEBUG 2024-02-23 13:13:45,061 [pN:main,p:74649,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:Meryldb from the datatype registry for extension meryldb. +galaxy.datatypes.registry DEBUG 2024-02-23 13:13:45,061 [pN:main,p:74649,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:Bref3 from the datatype registry for extension bref3. +galaxy.datatypes.registry DEBUG 2024-02-23 13:13:45,061 [pN:main,p:74649,tN:MainThread] Retrieved datatype module galaxy.datatypes.proteomics:Mgf from the datatype registry for extension mgf. +galaxy.datatypes.registry DEBUG 2024-02-23 13:13:45,061 [pN:main,p:74649,tN:MainThread] Retrieved datatype module galaxy.datatypes.proteomics:Wiff from the datatype registry for extension wiff. +galaxy.datatypes.registry DEBUG 2024-02-23 13:13:45,061 [pN:main,p:74649,tN:MainThread] Retrieved datatype module galaxy.datatypes.proteomics:Wiff2 from the datatype registry for extension wiff2. +galaxy.datatypes.registry DEBUG 2024-02-23 13:13:45,061 [pN:main,p:74649,tN:MainThread] Retrieved datatype module galaxy.datatypes.proteomics:MzXML from the datatype registry for extension mzxml. +galaxy.datatypes.registry DEBUG 2024-02-23 13:13:45,061 [pN:main,p:74649,tN:MainThread] Retrieved datatype module galaxy.datatypes.proteomics:MzData from the datatype registry for extension mzdata. +galaxy.datatypes.registry DEBUG 2024-02-23 13:13:45,061 [pN:main,p:74649,tN:MainThread] Retrieved datatype module galaxy.datatypes.proteomics:Ms2 from the datatype registry for extension ms2. +galaxy.datatypes.registry DEBUG 2024-02-23 13:13:45,061 [pN:main,p:74649,tN:MainThread] Retrieved datatype module galaxy.datatypes.proteomics:MzQuantML from the datatype registry for extension mzq. +galaxy.datatypes.registry DEBUG 2024-02-23 13:13:45,062 [pN:main,p:74649,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:SQlite from the datatype registry for extension sqlite. +galaxy.datatypes.registry DEBUG 2024-02-23 13:13:45,062 [pN:main,p:74649,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:MzSQlite from the datatype registry for extension mz.sqlite. +galaxy.datatypes.registry DEBUG 2024-02-23 13:13:45,062 [pN:main,p:74649,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:OSW from the datatype registry for extension osw. +galaxy.datatypes.registry DEBUG 2024-02-23 13:13:45,062 [pN:main,p:74649,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:PQP from the datatype registry for extension pqp. +galaxy.datatypes.registry DEBUG 2024-02-23 13:13:45,062 [pN:main,p:74649,tN:MainThread] Retrieved datatype module galaxy.datatypes.proteomics:TraML from the datatype registry for extension traml. +galaxy.datatypes.registry DEBUG 2024-02-23 13:13:45,062 [pN:main,p:74649,tN:MainThread] Retrieved datatype module galaxy.datatypes.proteomics:TrafoXML from the datatype registry for extension trafoxml. +galaxy.datatypes.registry DEBUG 2024-02-23 13:13:45,062 [pN:main,p:74649,tN:MainThread] Retrieved datatype module galaxy.datatypes.proteomics:FeatureXML from the datatype registry for extension featurexml. +galaxy.datatypes.registry DEBUG 2024-02-23 13:13:45,062 [pN:main,p:74649,tN:MainThread] Retrieved datatype module galaxy.datatypes.proteomics:ConsensusXML from the datatype registry for extension consensusxml. +galaxy.datatypes.registry DEBUG 2024-02-23 13:13:45,062 [pN:main,p:74649,tN:MainThread] Retrieved datatype module galaxy.datatypes.proteomics:UniProtXML from the datatype registry for extension uniprotxml. +galaxy.datatypes.registry DEBUG 2024-02-23 13:13:45,062 [pN:main,p:74649,tN:MainThread] Retrieved datatype module galaxy.datatypes.proteomics:XquestXML from the datatype registry for extension xquest.xml. +galaxy.datatypes.registry DEBUG 2024-02-23 13:13:45,063 [pN:main,p:74649,tN:MainThread] Retrieved datatype module galaxy.datatypes.proteomics:XquestSpecXML from the datatype registry for extension spec.xml. +galaxy.datatypes.registry DEBUG 2024-02-23 13:13:45,063 [pN:main,p:74649,tN:MainThread] Retrieved datatype module galaxy.datatypes.proteomics:QCML from the datatype registry for extension qcml. +galaxy.datatypes.registry DEBUG 2024-02-23 13:13:45,063 [pN:main,p:74649,tN:MainThread] Retrieved datatype module galaxy.datatypes.text:Json from the datatype registry for extension mzqc. +galaxy.datatypes.registry DEBUG 2024-02-23 13:13:45,063 [pN:main,p:74649,tN:MainThread] Retrieved datatype module galaxy.datatypes.proteomics:Msp from the datatype registry for extension msp. +galaxy.datatypes.registry DEBUG 2024-02-23 13:13:45,063 [pN:main,p:74649,tN:MainThread] Retrieved datatype module galaxy.datatypes.proteomics:SPLibNoIndex from the datatype registry for extension splib_noindex. +galaxy.datatypes.registry DEBUG 2024-02-23 13:13:45,063 [pN:main,p:74649,tN:MainThread] Retrieved datatype module galaxy.datatypes.proteomics:SPLib from the datatype registry for extension splib. +galaxy.datatypes.registry DEBUG 2024-02-23 13:13:45,063 [pN:main,p:74649,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:BlibSQlite from the datatype registry for extension blib. +galaxy.datatypes.registry DEBUG 2024-02-23 13:13:45,063 [pN:main,p:74649,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:DlibSQlite from the datatype registry for extension dlib. +galaxy.datatypes.registry DEBUG 2024-02-23 13:13:45,063 [pN:main,p:74649,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:ElibSQlite from the datatype registry for extension elib. +galaxy.datatypes.registry DEBUG 2024-02-23 13:13:45,063 [pN:main,p:74649,tN:MainThread] Retrieved datatype module galaxy.datatypes.proteomics:XHunterAslFormat from the datatype registry for extension hlf. +galaxy.datatypes.registry DEBUG 2024-02-23 13:13:45,064 [pN:main,p:74649,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:IdpDB from the datatype registry for extension idpdb. +galaxy.datatypes.registry DEBUG 2024-02-23 13:13:45,064 [pN:main,p:74649,tN:MainThread] Retrieved datatype module galaxy.datatypes.proteomics:Sf3 from the datatype registry for extension sf3. +galaxy.datatypes.registry DEBUG 2024-02-23 13:13:45,064 [pN:main,p:74649,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:Binary from the datatype registry for extension cps. +galaxy.datatypes.registry DEBUG 2024-02-23 13:13:45,064 [pN:main,p:74649,tN:MainThread] Retrieved datatype module galaxy.datatypes.tabular:ConnectivityTable from the datatype registry for extension ct. +galaxy.datatypes.registry DEBUG 2024-02-23 13:13:45,064 [pN:main,p:74649,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:PostgresqlArchive from the datatype registry for extension postgresql. +galaxy.datatypes.registry DEBUG 2024-02-23 13:13:45,064 [pN:main,p:74649,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:MongoDBArchive from the datatype registry for extension mongodb. +galaxy.datatypes.registry DEBUG 2024-02-23 13:13:45,064 [pN:main,p:74649,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:GeneNoteBook from the datatype registry for extension genenotebook. +galaxy.datatypes.registry DEBUG 2024-02-23 13:13:45,064 [pN:main,p:74649,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:SearchGuiArchive from the datatype registry for extension searchgui_archive. +galaxy.datatypes.registry DEBUG 2024-02-23 13:13:45,064 [pN:main,p:74649,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:Fast5Archive from the datatype registry for extension fast5.tar. +galaxy.datatypes.registry DEBUG 2024-02-23 13:13:45,064 [pN:main,p:74649,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:Fast5ArchiveGz from the datatype registry for extension fast5.tar.gz. +galaxy.datatypes.registry DEBUG 2024-02-23 13:13:45,065 [pN:main,p:74649,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:Fast5ArchiveBz2 from the datatype registry for extension fast5.tar.bz2. +galaxy.datatypes.registry DEBUG 2024-02-23 13:13:45,065 [pN:main,p:74649,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:CompressedArchive from the datatype registry for extension peptideshaker_archive. +galaxy.datatypes.registry DEBUG 2024-02-23 13:13:45,065 [pN:main,p:74649,tN:MainThread] Retrieved datatype module galaxy.datatypes.tabular:Tabular from the datatype registry for extension percin. +galaxy.datatypes.registry DEBUG 2024-02-23 13:13:45,065 [pN:main,p:74649,tN:MainThread] Retrieved datatype module galaxy.datatypes.xml:GenericXml from the datatype registry for extension percout. +galaxy.datatypes.registry DEBUG 2024-02-23 13:13:45,065 [pN:main,p:74649,tN:MainThread] Retrieved datatype module galaxy.datatypes.tabular:Tabular from the datatype registry for extension hardklor. +galaxy.datatypes.registry DEBUG 2024-02-23 13:13:45,065 [pN:main,p:74649,tN:MainThread] Retrieved datatype module galaxy.datatypes.tabular:Tabular from the datatype registry for extension kronik. +galaxy.datatypes.registry DEBUG 2024-02-23 13:13:45,065 [pN:main,p:74649,tN:MainThread] Retrieved datatype module galaxy.datatypes.proteomics:ImzML from the datatype registry for extension imzml. +galaxy.datatypes.registry DEBUG 2024-02-23 13:13:45,065 [pN:main,p:74649,tN:MainThread] Retrieved datatype module galaxy.datatypes.images:Analyze75 from the datatype registry for extension analyze75. +galaxy.datatypes.registry DEBUG 2024-02-23 13:13:45,066 [pN:main,p:74649,tN:MainThread] Retrieved datatype module galaxy.datatypes.images:Nifti1 from the datatype registry for extension nii1. +galaxy.datatypes.registry DEBUG 2024-02-23 13:13:45,066 [pN:main,p:74649,tN:MainThread] Retrieved datatype module galaxy.datatypes.images:Nifti2 from the datatype registry for extension nii2. +galaxy.datatypes.registry DEBUG 2024-02-23 13:13:45,066 [pN:main,p:74649,tN:MainThread] Retrieved datatype module galaxy.datatypes.images:Gifti from the datatype registry for extension gii. +galaxy.datatypes.registry DEBUG 2024-02-23 13:13:45,066 [pN:main,p:74649,tN:MainThread] Retrieved datatype module galaxy.datatypes.images:Tck from the datatype registry for extension tck. +galaxy.datatypes.registry DEBUG 2024-02-23 13:13:45,066 [pN:main,p:74649,tN:MainThread] Retrieved datatype module galaxy.datatypes.images:Trk from the datatype registry for extension trk. +galaxy.datatypes.registry DEBUG 2024-02-23 13:13:45,066 [pN:main,p:74649,tN:MainThread] Retrieved datatype module galaxy.datatypes.images:Mrc2014 from the datatype registry for extension mrc. +galaxy.datatypes.registry DEBUG 2024-02-23 13:13:45,066 [pN:main,p:74649,tN:MainThread] Retrieved datatype module galaxy.datatypes.images:Star from the datatype registry for extension star. +galaxy.datatypes.registry DEBUG 2024-02-23 13:13:45,066 [pN:main,p:74649,tN:MainThread] Retrieved datatype module galaxy.datatypes.proteomics:PEFF from the datatype registry for extension peff. +galaxy.datatypes.registry DEBUG 2024-02-23 13:13:45,067 [pN:main,p:74649,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension toml. +galaxy.datatypes.registry DEBUG 2024-02-23 13:13:45,067 [pN:main,p:74649,tN:MainThread] Retrieved datatype module galaxy.datatypes.flow:FCS from the datatype registry for extension fcs. +galaxy.datatypes.registry DEBUG 2024-02-23 13:13:45,067 [pN:main,p:74649,tN:MainThread] Retrieved datatype module galaxy.datatypes.tabular:Tabular from the datatype registry for extension flowtext. +galaxy.datatypes.registry DEBUG 2024-02-23 13:13:45,067 [pN:main,p:74649,tN:MainThread] Retrieved datatype module galaxy.datatypes.tabular:Tabular from the datatype registry for extension flowclr. +galaxy.datatypes.registry DEBUG 2024-02-23 13:13:45,067 [pN:main,p:74649,tN:MainThread] Retrieved datatype module galaxy.datatypes.tabular:Tabular from the datatype registry for extension flowmfi. +galaxy.datatypes.registry DEBUG 2024-02-23 13:13:45,068 [pN:main,p:74649,tN:MainThread] Retrieved datatype module galaxy.datatypes.tabular:Tabular from the datatype registry for extension flowstat1. +galaxy.datatypes.registry DEBUG 2024-02-23 13:13:45,068 [pN:main,p:74649,tN:MainThread] Retrieved datatype module galaxy.datatypes.tabular:Tabular from the datatype registry for extension flowstat2. +galaxy.datatypes.registry DEBUG 2024-02-23 13:13:45,068 [pN:main,p:74649,tN:MainThread] Retrieved datatype module galaxy.datatypes.tabular:Tabular from the datatype registry for extension flowstat3. +galaxy.datatypes.registry DEBUG 2024-02-23 13:13:45,068 [pN:main,p:74649,tN:MainThread] Retrieved datatype module galaxy.datatypes.tabular:Tabular from the datatype registry for extension flowscore. +galaxy.datatypes.registry DEBUG 2024-02-23 13:13:45,068 [pN:main,p:74649,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:RData from the datatype registry for extension flowframe. +galaxy.datatypes.registry DEBUG 2024-02-23 13:13:45,068 [pN:main,p:74649,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:RData from the datatype registry for extension fsom. +galaxy.datatypes.registry DEBUG 2024-02-23 13:13:45,068 [pN:main,p:74649,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:RData from the datatype registry for extension flowset. +galaxy.datatypes.registry DEBUG 2024-02-23 13:13:45,069 [pN:main,p:74649,tN:MainThread] Retrieved datatype module galaxy.datatypes.tabular:Tabular from the datatype registry for extension metacyto_clr.txt. +galaxy.datatypes.registry DEBUG 2024-02-23 13:13:45,069 [pN:main,p:74649,tN:MainThread] Retrieved datatype module galaxy.datatypes.metacyto:mSummary from the datatype registry for extension metacyto_summary.txt. +galaxy.datatypes.registry DEBUG 2024-02-23 13:13:45,069 [pN:main,p:74649,tN:MainThread] Retrieved datatype module galaxy.datatypes.metacyto:mStats from the datatype registry for extension metacyto_stats.txt. +galaxy.datatypes.registry DEBUG 2024-02-23 13:13:45,069 [pN:main,p:74649,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:CompressedArchive from the datatype registry for extension deeptools_compute_matrix_archive. +galaxy.datatypes.registry DEBUG 2024-02-23 13:13:45,069 [pN:main,p:74649,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:CompressedArchive from the datatype registry for extension deeptools_coverage_matrix. +galaxy.datatypes.registry DEBUG 2024-02-23 13:13:45,070 [pN:main,p:74649,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:NetCDF from the datatype registry for extension netcdf. +galaxy.datatypes.registry DEBUG 2024-02-23 13:13:45,070 [pN:main,p:74649,tN:MainThread] Retrieved datatype module galaxy.datatypes.images:Eps from the datatype registry for extension eps. +galaxy.datatypes.registry DEBUG 2024-02-23 13:13:45,070 [pN:main,p:74649,tN:MainThread] Retrieved datatype module galaxy.datatypes.images:Rast from the datatype registry for extension rast. +galaxy.datatypes.registry DEBUG 2024-02-23 13:13:45,070 [pN:main,p:74649,tN:MainThread] Retrieved datatype module galaxy.datatypes.images:Laj from the datatype registry for extension laj. +galaxy.datatypes.registry DEBUG 2024-02-23 13:13:45,070 [pN:main,p:74649,tN:MainThread] Retrieved datatype module galaxy.datatypes.sequence:Lav from the datatype registry for extension lav. +galaxy.datatypes.registry DEBUG 2024-02-23 13:13:45,070 [pN:main,p:74649,tN:MainThread] Retrieved datatype module galaxy.datatypes.sequence:Maf from the datatype registry for extension maf. +galaxy.datatypes.registry DEBUG 2024-02-23 13:13:45,070 [pN:main,p:74649,tN:MainThread] Retrieved datatype module galaxy.datatypes.sequence:MafCustomTrack from the datatype registry for extension mafcustomtrack. +galaxy.datatypes.registry DEBUG 2024-02-23 13:13:45,070 [pN:main,p:74649,tN:MainThread] Retrieved datatype module galaxy.datatypes.tabular:MatrixMarket from the datatype registry for extension mtx. +galaxy.datatypes.registry DEBUG 2024-02-23 13:13:45,070 [pN:main,p:74649,tN:MainThread] Retrieved datatype module galaxy.datatypes.tabular:CMAP from the datatype registry for extension cmap. +galaxy.datatypes.registry DEBUG 2024-02-23 13:13:45,070 [pN:main,p:74649,tN:MainThread] Retrieved datatype module galaxy.datatypes.interval:ENCODEPeak from the datatype registry for extension encodepeak. +galaxy.datatypes.registry DEBUG 2024-02-23 13:13:45,071 [pN:main,p:74649,tN:MainThread] Retrieved datatype module galaxy.datatypes.images:Pdf from the datatype registry for extension pdf. +galaxy.datatypes.registry DEBUG 2024-02-23 13:13:45,071 [pN:main,p:74649,tN:MainThread] Retrieved datatype module galaxy.datatypes.tabular:Pileup from the datatype registry for extension pileup. +galaxy.datatypes.registry DEBUG 2024-02-23 13:13:45,071 [pN:main,p:74649,tN:MainThread] Retrieved datatype module galaxy.datatypes.tabular:Psl from the datatype registry for extension psl. +galaxy.datatypes.registry DEBUG 2024-02-23 13:13:45,071 [pN:main,p:74649,tN:MainThread] Retrieved datatype module galaxy.datatypes.text:Obo from the datatype registry for extension obo. +galaxy.datatypes.registry DEBUG 2024-02-23 13:13:45,071 [pN:main,p:74649,tN:MainThread] Retrieved datatype module galaxy.datatypes.xml:Owl from the datatype registry for extension owl. +galaxy.datatypes.registry DEBUG 2024-02-23 13:13:45,071 [pN:main,p:74649,tN:MainThread] Retrieved datatype module galaxy.datatypes.images:Png from the datatype registry for extension png. +galaxy.datatypes.registry DEBUG 2024-02-23 13:13:45,071 [pN:main,p:74649,tN:MainThread] Retrieved datatype module galaxy.datatypes.qualityscore:QualityScore from the datatype registry for extension qual. +galaxy.datatypes.registry DEBUG 2024-02-23 13:13:45,071 [pN:main,p:74649,tN:MainThread] Retrieved datatype module galaxy.datatypes.qualityscore:QualityScoreSolexa from the datatype registry for extension qualsolexa. +galaxy.datatypes.registry DEBUG 2024-02-23 13:13:45,071 [pN:main,p:74649,tN:MainThread] Retrieved datatype module galaxy.datatypes.qualityscore:QualityScoreIllumina from the datatype registry for extension qualillumina. +galaxy.datatypes.registry DEBUG 2024-02-23 13:13:45,071 [pN:main,p:74649,tN:MainThread] Retrieved datatype module galaxy.datatypes.qualityscore:QualityScoreSOLiD from the datatype registry for extension qualsolid. +galaxy.datatypes.registry DEBUG 2024-02-23 13:13:45,072 [pN:main,p:74649,tN:MainThread] Retrieved datatype module galaxy.datatypes.qualityscore:QualityScore454 from the datatype registry for extension qual454. +galaxy.datatypes.registry DEBUG 2024-02-23 13:13:45,072 [pN:main,p:74649,tN:MainThread] Retrieved datatype module galaxy.datatypes.assembly:Roadmaps from the datatype registry for extension roadmaps. +galaxy.datatypes.registry DEBUG 2024-02-23 13:13:45,072 [pN:main,p:74649,tN:MainThread] Retrieved datatype module galaxy.datatypes.tabular:Sam from the datatype registry for extension sam. +galaxy.datatypes.registry DEBUG 2024-02-23 13:13:45,072 [pN:main,p:74649,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:Scf from the datatype registry for extension scf. +galaxy.datatypes.registry DEBUG 2024-02-23 13:13:45,072 [pN:main,p:74649,tN:MainThread] Retrieved datatype module galaxy.datatypes.assembly:Sequences from the datatype registry for extension sequences. +galaxy.datatypes.registry DEBUG 2024-02-23 13:13:45,072 [pN:main,p:74649,tN:MainThread] Retrieved datatype module galaxy.datatypes.text:SnpEffDb from the datatype registry for extension snpeffdb. +galaxy.datatypes.registry DEBUG 2024-02-23 13:13:45,072 [pN:main,p:74649,tN:MainThread] Retrieved datatype module galaxy.datatypes.text:SnpSiftDbNSFP from the datatype registry for extension snpsiftdbnsfp. +galaxy.datatypes.registry DEBUG 2024-02-23 13:13:45,072 [pN:main,p:74649,tN:MainThread] Retrieved datatype module galaxy.datatypes.tabular:Tabular from the datatype registry for extension dbnsfp.tabular. +galaxy.datatypes.registry DEBUG 2024-02-23 13:13:45,072 [pN:main,p:74649,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:Sff from the datatype registry for extension sff. +galaxy.datatypes.registry DEBUG 2024-02-23 13:13:45,073 [pN:main,p:74649,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:Sra from the datatype registry for extension sra. +galaxy.datatypes.registry DEBUG 2024-02-23 13:13:45,073 [pN:main,p:74649,tN:MainThread] Retrieved datatype module galaxy.datatypes.tabular:SraManifest from the datatype registry for extension sra_manifest.tabular. +galaxy.datatypes.registry DEBUG 2024-02-23 13:13:45,073 [pN:main,p:74649,tN:MainThread] Retrieved datatype module galaxy.datatypes.xml:GenericXml from the datatype registry for extension svg. +galaxy.datatypes.registry DEBUG 2024-02-23 13:13:45,073 [pN:main,p:74649,tN:MainThread] Retrieved datatype module galaxy.datatypes.tabular:Taxonomy from the datatype registry for extension taxonomy. +galaxy.datatypes.registry DEBUG 2024-02-23 13:13:45,073 [pN:main,p:74649,tN:MainThread] Retrieved datatype module galaxy.datatypes.tabular:Tabular from the datatype registry for extension tabular. +galaxy.datatypes.registry DEBUG 2024-02-23 13:13:45,073 [pN:main,p:74649,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:TwoBit from the datatype registry for extension twobit. +galaxy.datatypes.registry DEBUG 2024-02-23 13:13:45,073 [pN:main,p:74649,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:SQmass from the datatype registry for extension sqmass. +galaxy.datatypes.registry DEBUG 2024-02-23 13:13:45,073 [pN:main,p:74649,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:GeminiSQLite from the datatype registry for extension gemini.sqlite. +galaxy.datatypes.registry DEBUG 2024-02-23 13:13:45,073 [pN:main,p:74649,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:ChiraSQLite from the datatype registry for extension chira.sqlite. +galaxy.datatypes.registry DEBUG 2024-02-23 13:13:45,074 [pN:main,p:74649,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:CuffDiffSQlite from the datatype registry for extension cuffdiff.sqlite. +galaxy.datatypes.registry DEBUG 2024-02-23 13:13:45,074 [pN:main,p:74649,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:GAFASQLite from the datatype registry for extension gafa.sqlite. +galaxy.datatypes.registry DEBUG 2024-02-23 13:13:45,074 [pN:main,p:74649,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:NcbiTaxonomySQlite from the datatype registry for extension ncbitaxonomy.sqlite. +galaxy.datatypes.registry DEBUG 2024-02-23 13:13:45,074 [pN:main,p:74649,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension txt. +galaxy.datatypes.registry DEBUG 2024-02-23 13:13:45,074 [pN:main,p:74649,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:LineCount from the datatype registry for extension linecount. +galaxy.datatypes.registry DEBUG 2024-02-23 13:13:45,074 [pN:main,p:74649,tN:MainThread] Retrieved datatype module galaxy.datatypes.sequence:MemePsp from the datatype registry for extension memepsp. +galaxy.datatypes.registry DEBUG 2024-02-23 13:13:45,074 [pN:main,p:74649,tN:MainThread] Retrieved datatype module galaxy.datatypes.xml:MEMEXml from the datatype registry for extension memexml. +galaxy.datatypes.registry DEBUG 2024-02-23 13:13:45,074 [pN:main,p:74649,tN:MainThread] Retrieved datatype module galaxy.datatypes.xml:CisML from the datatype registry for extension cisml. +galaxy.datatypes.registry DEBUG 2024-02-23 13:13:45,074 [pN:main,p:74649,tN:MainThread] Retrieved datatype module galaxy.datatypes.xml:GenericXml from the datatype registry for extension xml. +galaxy.datatypes.registry DEBUG 2024-02-23 13:13:45,074 [pN:main,p:74649,tN:MainThread] Retrieved datatype module galaxy.datatypes.xml:GenericXml from the datatype registry for extension xsd. +galaxy.datatypes.registry DEBUG 2024-02-23 13:13:45,074 [pN:main,p:74649,tN:MainThread] Retrieved datatype module galaxy.datatypes.xml:Dzi from the datatype registry for extension dzi. +galaxy.datatypes.registry DEBUG 2024-02-23 13:13:45,075 [pN:main,p:74649,tN:MainThread] Retrieved datatype module galaxy.datatypes.tabular:Vcf from the datatype registry for extension vcf. +galaxy.datatypes.registry DEBUG 2024-02-23 13:13:45,075 [pN:main,p:74649,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:Bcf from the datatype registry for extension bcf. +galaxy.datatypes.registry DEBUG 2024-02-23 13:13:45,075 [pN:main,p:74649,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:Bcf from the datatype registry for extension bcf_bgzip. +galaxy.datatypes.registry DEBUG 2024-02-23 13:13:45,076 [pN:main,p:74649,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:BcfUncompressed from the datatype registry for extension bcf_uncompressed. +galaxy.datatypes.registry DEBUG 2024-02-23 13:13:45,076 [pN:main,p:74649,tN:MainThread] Retrieved datatype module galaxy.datatypes.assembly:Velvet from the datatype registry for extension velvet. +galaxy.datatypes.registry DEBUG 2024-02-23 13:13:45,076 [pN:main,p:74649,tN:MainThread] Retrieved datatype module galaxy.datatypes.interval:Wiggle from the datatype registry for extension wig. +galaxy.datatypes.registry DEBUG 2024-02-23 13:13:45,076 [pN:main,p:74649,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:Binary from the datatype registry for extension interval_index. +galaxy.datatypes.registry DEBUG 2024-02-23 13:13:45,077 [pN:main,p:74649,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:Binary from the datatype registry for extension odgi. +galaxy.datatypes.registry DEBUG 2024-02-23 13:13:45,077 [pN:main,p:74649,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:CompressedArchive from the datatype registry for extension vg. +galaxy.datatypes.registry DEBUG 2024-02-23 13:13:45,077 [pN:main,p:74649,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:Binary from the datatype registry for extension xg. +galaxy.datatypes.registry DEBUG 2024-02-23 13:13:45,077 [pN:main,p:74649,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:Binary from the datatype registry for extension protobuf2. +galaxy.datatypes.registry DEBUG 2024-02-23 13:13:45,077 [pN:main,p:74649,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:Binary from the datatype registry for extension protobuf3. +galaxy.datatypes.registry DEBUG 2024-02-23 13:13:45,077 [pN:main,p:74649,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:Binary from the datatype registry for extension onnx. +galaxy.datatypes.registry DEBUG 2024-02-23 13:13:45,077 [pN:main,p:74649,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:Binary from the datatype registry for extension tabix. +galaxy.datatypes.registry DEBUG 2024-02-23 13:13:45,078 [pN:main,p:74649,tN:MainThread] Retrieved datatype module galaxy.datatypes.interval:IntervalTabix from the datatype registry for extension interval_tabix.gz. +galaxy.datatypes.registry DEBUG 2024-02-23 13:13:45,078 [pN:main,p:74649,tN:MainThread] Retrieved datatype module galaxy.datatypes.interval:JuicerMediumTabix from the datatype registry for extension juicer_medium_tabix.gz. +galaxy.datatypes.registry DEBUG 2024-02-23 13:13:45,078 [pN:main,p:74649,tN:MainThread] Retrieved datatype module galaxy.datatypes.interval:BedTabix from the datatype registry for extension bed_tabix.gz. +galaxy.datatypes.registry DEBUG 2024-02-23 13:13:45,078 [pN:main,p:74649,tN:MainThread] Retrieved datatype module galaxy.datatypes.interval:GffTabix from the datatype registry for extension gff_tabix.gz. +galaxy.datatypes.registry DEBUG 2024-02-23 13:13:45,078 [pN:main,p:74649,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:Binary from the datatype registry for extension bgzip. +galaxy.datatypes.registry DEBUG 2024-02-23 13:13:45,078 [pN:main,p:74649,tN:MainThread] Retrieved datatype module galaxy.datatypes.tabular:VcfGz from the datatype registry for extension vcf_bgzip. +galaxy.datatypes.registry DEBUG 2024-02-23 13:13:45,078 [pN:main,p:74649,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:Binary from the datatype registry for extension bus. +galaxy.datatypes.registry DEBUG 2024-02-23 13:13:45,078 [pN:main,p:74649,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:Binary from the datatype registry for extension kallisto.idx. +galaxy.datatypes.registry DEBUG 2024-02-23 13:13:45,078 [pN:main,p:74649,tN:MainThread] Retrieved datatype module galaxy.datatypes.xml:Phyloxml from the datatype registry for extension phyloxml. +galaxy.datatypes.registry DEBUG 2024-02-23 13:13:45,078 [pN:main,p:74649,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:Newick from the datatype registry for extension newick. +galaxy.datatypes.registry DEBUG 2024-02-23 13:13:45,079 [pN:main,p:74649,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:Newick from the datatype registry for extension nhx. +galaxy.datatypes.registry DEBUG 2024-02-23 13:13:45,079 [pN:main,p:74649,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:Nexus from the datatype registry for extension nex. +galaxy.datatypes.registry DEBUG 2024-02-23 13:13:45,079 [pN:main,p:74649,tN:MainThread] Retrieved datatype module galaxy.datatypes.text:IQTree from the datatype registry for extension iqtree. +galaxy.datatypes.registry DEBUG 2024-02-23 13:13:45,080 [pN:main,p:74649,tN:MainThread] Retrieved datatype module galaxy.datatypes.mothur:SquareDistanceMatrix from the datatype registry for extension mldist. +galaxy.datatypes.registry DEBUG 2024-02-23 13:13:45,083 [pN:main,p:74649,tN:MainThread] Retrieved datatype module galaxy.datatypes.genetics:Affybatch from the datatype registry for extension affybatch. +galaxy.datatypes.registry DEBUG 2024-02-23 13:13:45,083 [pN:main,p:74649,tN:MainThread] Retrieved datatype module galaxy.datatypes.genetics:Eigenstratgeno from the datatype registry for extension eigenstratgeno. +galaxy.datatypes.registry DEBUG 2024-02-23 13:13:45,083 [pN:main,p:74649,tN:MainThread] Retrieved datatype module galaxy.datatypes.genetics:Eigenstratpca from the datatype registry for extension eigenstratpca. +galaxy.datatypes.registry DEBUG 2024-02-23 13:13:45,083 [pN:main,p:74649,tN:MainThread] Retrieved datatype module galaxy.datatypes.genetics:Eset from the datatype registry for extension eset. +galaxy.datatypes.registry DEBUG 2024-02-23 13:13:45,084 [pN:main,p:74649,tN:MainThread] Retrieved datatype module galaxy.datatypes.genetics:Fped from the datatype registry for extension fped. +galaxy.datatypes.registry DEBUG 2024-02-23 13:13:45,084 [pN:main,p:74649,tN:MainThread] Retrieved datatype module galaxy.datatypes.genetics:Fphe from the datatype registry for extension fphe. +galaxy.datatypes.registry DEBUG 2024-02-23 13:13:45,084 [pN:main,p:74649,tN:MainThread] Retrieved datatype module galaxy.datatypes.genetics:GenomeGraphs from the datatype registry for extension gg. +galaxy.datatypes.registry DEBUG 2024-02-23 13:13:45,084 [pN:main,p:74649,tN:MainThread] Retrieved datatype module galaxy.datatypes.genetics:ldIndep from the datatype registry for extension ldindep. +galaxy.datatypes.registry DEBUG 2024-02-23 13:13:45,084 [pN:main,p:74649,tN:MainThread] Retrieved datatype module galaxy.datatypes.genetics:MAlist from the datatype registry for extension malist. +galaxy.datatypes.registry DEBUG 2024-02-23 13:13:45,084 [pN:main,p:74649,tN:MainThread] Retrieved datatype module galaxy.datatypes.genetics:Lped from the datatype registry for extension lped. +galaxy.datatypes.registry DEBUG 2024-02-23 13:13:45,084 [pN:main,p:74649,tN:MainThread] Retrieved datatype module galaxy.datatypes.genetics:Pbed from the datatype registry for extension pbed. +galaxy.datatypes.registry DEBUG 2024-02-23 13:13:45,084 [pN:main,p:74649,tN:MainThread] Retrieved datatype module galaxy.datatypes.genetics:Pheno from the datatype registry for extension pheno. +galaxy.datatypes.registry DEBUG 2024-02-23 13:13:45,084 [pN:main,p:74649,tN:MainThread] Retrieved datatype module galaxy.datatypes.genetics:Pphe from the datatype registry for extension pphe. +galaxy.datatypes.registry DEBUG 2024-02-23 13:13:45,085 [pN:main,p:74649,tN:MainThread] Retrieved datatype module galaxy.datatypes.genetics:RexpBase from the datatype registry for extension rexpbase. +galaxy.datatypes.registry DEBUG 2024-02-23 13:13:45,085 [pN:main,p:74649,tN:MainThread] Retrieved datatype module galaxy.datatypes.genetics:Rgenetics from the datatype registry for extension rgenetics. +galaxy.datatypes.registry DEBUG 2024-02-23 13:13:45,085 [pN:main,p:74649,tN:MainThread] Retrieved datatype module galaxy.datatypes.genetics:Snptest from the datatype registry for extension snptest. +galaxy.datatypes.registry DEBUG 2024-02-23 13:13:45,085 [pN:main,p:74649,tN:MainThread] Retrieved datatype module galaxy.datatypes.genetics:SNPMatrix from the datatype registry for extension snpmatrix. +galaxy.datatypes.registry DEBUG 2024-02-23 13:13:45,085 [pN:main,p:74649,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:ExcelXls from the datatype registry for extension xls. +galaxy.datatypes.registry DEBUG 2024-02-23 13:13:45,085 [pN:main,p:74649,tN:MainThread] Retrieved datatype module galaxy.datatypes.text:Ipynb from the datatype registry for extension ipynb. +galaxy.datatypes.registry DEBUG 2024-02-23 13:13:45,085 [pN:main,p:74649,tN:MainThread] Retrieved datatype module galaxy.datatypes.text:Json from the datatype registry for extension json. +galaxy.datatypes.registry DEBUG 2024-02-23 13:13:45,085 [pN:main,p:74649,tN:MainThread] Retrieved datatype module galaxy.datatypes.text:ExpressionJson from the datatype registry for extension expression.json. +galaxy.datatypes.registry DEBUG 2024-02-23 13:13:45,086 [pN:main,p:74649,tN:MainThread] Retrieved datatype module galaxy.datatypes.graph:Xgmml from the datatype registry for extension xgmml. +galaxy.datatypes.registry DEBUG 2024-02-23 13:13:45,086 [pN:main,p:74649,tN:MainThread] Retrieved datatype module galaxy.datatypes.graph:Sif from the datatype registry for extension sif. +galaxy.datatypes.registry DEBUG 2024-02-23 13:13:45,087 [pN:main,p:74649,tN:MainThread] Retrieved datatype module galaxy.datatypes.triples:Triples from the datatype registry for extension triples. +galaxy.datatypes.registry DEBUG 2024-02-23 13:13:45,087 [pN:main,p:74649,tN:MainThread] Retrieved datatype module galaxy.datatypes.triples:HDT from the datatype registry for extension hdt. +galaxy.datatypes.registry DEBUG 2024-02-23 13:13:45,088 [pN:main,p:74649,tN:MainThread] Retrieved datatype module galaxy.datatypes.triples:NTriples from the datatype registry for extension nt. +galaxy.datatypes.registry DEBUG 2024-02-23 13:13:45,088 [pN:main,p:74649,tN:MainThread] Retrieved datatype module galaxy.datatypes.triples:N3 from the datatype registry for extension n3. +galaxy.datatypes.registry DEBUG 2024-02-23 13:13:45,088 [pN:main,p:74649,tN:MainThread] Retrieved datatype module galaxy.datatypes.triples:Turtle from the datatype registry for extension ttl. +galaxy.datatypes.registry DEBUG 2024-02-23 13:13:45,088 [pN:main,p:74649,tN:MainThread] Retrieved datatype module galaxy.datatypes.triples:Rdf from the datatype registry for extension rdf. +galaxy.datatypes.registry DEBUG 2024-02-23 13:13:45,088 [pN:main,p:74649,tN:MainThread] Retrieved datatype module galaxy.datatypes.triples:Jsonld from the datatype registry for extension jsonld. +galaxy.datatypes.registry DEBUG 2024-02-23 13:13:45,088 [pN:main,p:74649,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:ExcelXls from the datatype registry for extension excel.xls. +galaxy.datatypes.registry DEBUG 2024-02-23 13:13:45,088 [pN:main,p:74649,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:Xlsx from the datatype registry for extension xlsx. +galaxy.datatypes.registry DEBUG 2024-02-23 13:13:45,088 [pN:main,p:74649,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:Binary from the datatype registry for extension docx. +galaxy.datatypes.registry DEBUG 2024-02-23 13:13:45,088 [pN:main,p:74649,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension btwisted. +galaxy.datatypes.registry DEBUG 2024-02-23 13:13:45,088 [pN:main,p:74649,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension cai. +galaxy.datatypes.registry DEBUG 2024-02-23 13:13:45,089 [pN:main,p:74649,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension cat_db. +galaxy.datatypes.registry DEBUG 2024-02-23 13:13:45,089 [pN:main,p:74649,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension charge. +galaxy.datatypes.registry DEBUG 2024-02-23 13:13:45,089 [pN:main,p:74649,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension checktrans. +galaxy.datatypes.registry DEBUG 2024-02-23 13:13:45,089 [pN:main,p:74649,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension chips. +galaxy.datatypes.registry DEBUG 2024-02-23 13:13:45,089 [pN:main,p:74649,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension codcmp. +galaxy.datatypes.registry DEBUG 2024-02-23 13:13:45,089 [pN:main,p:74649,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension coderet. +galaxy.datatypes.registry DEBUG 2024-02-23 13:13:45,089 [pN:main,p:74649,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension compseq. +galaxy.datatypes.registry DEBUG 2024-02-23 13:13:45,089 [pN:main,p:74649,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension cpgplot. +galaxy.datatypes.registry DEBUG 2024-02-23 13:13:45,090 [pN:main,p:74649,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension cpgreport. +galaxy.datatypes.registry DEBUG 2024-02-23 13:13:45,090 [pN:main,p:74649,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension cusp. +galaxy.datatypes.registry DEBUG 2024-02-23 13:13:45,090 [pN:main,p:74649,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension cut. +galaxy.datatypes.registry DEBUG 2024-02-23 13:13:45,090 [pN:main,p:74649,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension dan. +galaxy.datatypes.registry DEBUG 2024-02-23 13:13:45,090 [pN:main,p:74649,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension digest. +galaxy.datatypes.registry DEBUG 2024-02-23 13:13:45,090 [pN:main,p:74649,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension dreg. +galaxy.datatypes.registry DEBUG 2024-02-23 13:13:45,090 [pN:main,p:74649,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension einverted. +galaxy.datatypes.registry DEBUG 2024-02-23 13:13:45,090 [pN:main,p:74649,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension epestfind. +galaxy.datatypes.registry DEBUG 2024-02-23 13:13:45,090 [pN:main,p:74649,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension equicktandem. +galaxy.datatypes.registry DEBUG 2024-02-23 13:13:45,091 [pN:main,p:74649,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension est2genome. +galaxy.datatypes.registry DEBUG 2024-02-23 13:13:45,091 [pN:main,p:74649,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension etandem. +galaxy.datatypes.registry DEBUG 2024-02-23 13:13:45,091 [pN:main,p:74649,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension freak. +galaxy.datatypes.registry DEBUG 2024-02-23 13:13:45,091 [pN:main,p:74649,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension fuzznuc. +galaxy.datatypes.registry DEBUG 2024-02-23 13:13:45,091 [pN:main,p:74649,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension fuzzpro. +galaxy.datatypes.registry DEBUG 2024-02-23 13:13:45,091 [pN:main,p:74649,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension fuzztran. +galaxy.datatypes.registry DEBUG 2024-02-23 13:13:45,091 [pN:main,p:74649,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension garnier. +galaxy.datatypes.registry DEBUG 2024-02-23 13:13:45,091 [pN:main,p:74649,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension geecee. +galaxy.datatypes.registry DEBUG 2024-02-23 13:13:45,091 [pN:main,p:74649,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension helixturnhelix. +galaxy.datatypes.registry DEBUG 2024-02-23 13:13:45,092 [pN:main,p:74649,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension hmoment. +galaxy.datatypes.registry DEBUG 2024-02-23 13:13:45,092 [pN:main,p:74649,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension isochore. +galaxy.datatypes.registry DEBUG 2024-02-23 13:13:45,092 [pN:main,p:74649,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension match. +galaxy.datatypes.registry DEBUG 2024-02-23 13:13:45,092 [pN:main,p:74649,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension nametable. +galaxy.datatypes.registry DEBUG 2024-02-23 13:13:45,092 [pN:main,p:74649,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension needle. +galaxy.datatypes.registry DEBUG 2024-02-23 13:13:45,092 [pN:main,p:74649,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension newcpgreport. +galaxy.datatypes.registry DEBUG 2024-02-23 13:13:45,092 [pN:main,p:74649,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension newcpgseek. +galaxy.datatypes.registry DEBUG 2024-02-23 13:13:45,092 [pN:main,p:74649,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension noreturn. +galaxy.datatypes.registry DEBUG 2024-02-23 13:13:45,092 [pN:main,p:74649,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension palindrome. +galaxy.datatypes.registry DEBUG 2024-02-23 13:13:45,093 [pN:main,p:74649,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension pepcoil. +galaxy.datatypes.registry DEBUG 2024-02-23 13:13:45,093 [pN:main,p:74649,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension pepinfo. +galaxy.datatypes.registry DEBUG 2024-02-23 13:13:45,093 [pN:main,p:74649,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension pepstats. +galaxy.datatypes.registry DEBUG 2024-02-23 13:13:45,093 [pN:main,p:74649,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension polydot. +galaxy.datatypes.registry DEBUG 2024-02-23 13:13:45,093 [pN:main,p:74649,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension preg. +galaxy.datatypes.registry DEBUG 2024-02-23 13:13:45,093 [pN:main,p:74649,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension prettyseq. +galaxy.datatypes.registry DEBUG 2024-02-23 13:13:45,093 [pN:main,p:74649,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension primersearch. +galaxy.datatypes.registry DEBUG 2024-02-23 13:13:45,093 [pN:main,p:74649,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension showfeat. +galaxy.datatypes.registry DEBUG 2024-02-23 13:13:45,093 [pN:main,p:74649,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension showorf. +galaxy.datatypes.registry DEBUG 2024-02-23 13:13:45,094 [pN:main,p:74649,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension sixpack. +galaxy.datatypes.registry DEBUG 2024-02-23 13:13:45,094 [pN:main,p:74649,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension strider. +galaxy.datatypes.registry DEBUG 2024-02-23 13:13:45,094 [pN:main,p:74649,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension supermatcher. +galaxy.datatypes.registry DEBUG 2024-02-23 13:13:45,094 [pN:main,p:74649,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension syco. +galaxy.datatypes.registry DEBUG 2024-02-23 13:13:45,094 [pN:main,p:74649,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension textsearch. +galaxy.datatypes.registry DEBUG 2024-02-23 13:13:45,094 [pN:main,p:74649,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension vectorstrip. +galaxy.datatypes.registry DEBUG 2024-02-23 13:13:45,094 [pN:main,p:74649,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension wobble. +galaxy.datatypes.registry DEBUG 2024-02-23 13:13:45,094 [pN:main,p:74649,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension wordcount. +galaxy.datatypes.registry DEBUG 2024-02-23 13:13:45,095 [pN:main,p:74649,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension dbmotif. +galaxy.datatypes.registry DEBUG 2024-02-23 13:13:45,095 [pN:main,p:74649,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension diffseq. +galaxy.datatypes.registry DEBUG 2024-02-23 13:13:45,095 [pN:main,p:74649,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension excel. +galaxy.datatypes.registry DEBUG 2024-02-23 13:13:45,095 [pN:main,p:74649,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension feattable. +galaxy.datatypes.registry DEBUG 2024-02-23 13:13:45,095 [pN:main,p:74649,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension motif. +galaxy.datatypes.registry DEBUG 2024-02-23 13:13:45,095 [pN:main,p:74649,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension regions. +galaxy.datatypes.registry DEBUG 2024-02-23 13:13:45,095 [pN:main,p:74649,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension seqtable. +galaxy.datatypes.registry DEBUG 2024-02-23 13:13:45,095 [pN:main,p:74649,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension simple. +galaxy.datatypes.registry DEBUG 2024-02-23 13:13:45,095 [pN:main,p:74649,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension table. +galaxy.datatypes.registry DEBUG 2024-02-23 13:13:45,096 [pN:main,p:74649,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension tagseq. +galaxy.datatypes.registry DEBUG 2024-02-23 13:13:45,096 [pN:main,p:74649,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension acedb. +galaxy.datatypes.registry DEBUG 2024-02-23 13:13:45,096 [pN:main,p:74649,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension clustal. +galaxy.datatypes.registry DEBUG 2024-02-23 13:13:45,096 [pN:main,p:74649,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension codata. +galaxy.datatypes.registry DEBUG 2024-02-23 13:13:45,096 [pN:main,p:74649,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension embl. +galaxy.datatypes.registry DEBUG 2024-02-23 13:13:45,096 [pN:main,p:74649,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension fitch. +galaxy.datatypes.registry DEBUG 2024-02-23 13:13:45,096 [pN:main,p:74649,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension gcg. +galaxy.datatypes.registry DEBUG 2024-02-23 13:13:45,096 [pN:main,p:74649,tN:MainThread] Retrieved datatype module galaxy.datatypes.sequence:Genbank from the datatype registry for extension genbank. +galaxy.datatypes.registry DEBUG 2024-02-23 13:13:45,097 [pN:main,p:74649,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension hennig86. +galaxy.datatypes.registry DEBUG 2024-02-23 13:13:45,097 [pN:main,p:74649,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension ig. +galaxy.datatypes.registry DEBUG 2024-02-23 13:13:45,097 [pN:main,p:74649,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension jackknifer. +galaxy.datatypes.registry DEBUG 2024-02-23 13:13:45,097 [pN:main,p:74649,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension jackknifernon. +galaxy.datatypes.registry DEBUG 2024-02-23 13:13:45,097 [pN:main,p:74649,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension mega. +galaxy.datatypes.registry DEBUG 2024-02-23 13:13:45,097 [pN:main,p:74649,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension meganon. +galaxy.datatypes.registry DEBUG 2024-02-23 13:13:45,097 [pN:main,p:74649,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension ncbi. +galaxy.datatypes.registry DEBUG 2024-02-23 13:13:45,097 [pN:main,p:74649,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension nexus. +galaxy.datatypes.registry DEBUG 2024-02-23 13:13:45,097 [pN:main,p:74649,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension nexusnon. +galaxy.datatypes.registry DEBUG 2024-02-23 13:13:45,098 [pN:main,p:74649,tN:MainThread] Retrieved datatype module galaxy.datatypes.phylip:Phylip from the datatype registry for extension phylip. +galaxy.datatypes.registry DEBUG 2024-02-23 13:13:45,098 [pN:main,p:74649,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension phylipnon. +galaxy.datatypes.registry DEBUG 2024-02-23 13:13:45,098 [pN:main,p:74649,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension pir. +galaxy.datatypes.registry DEBUG 2024-02-23 13:13:45,098 [pN:main,p:74649,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension staden. +galaxy.datatypes.registry DEBUG 2024-02-23 13:13:45,098 [pN:main,p:74649,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension swiss. +galaxy.datatypes.registry DEBUG 2024-02-23 13:13:45,099 [pN:main,p:74649,tN:MainThread] Retrieved datatype module galaxy.datatypes.msa:Msf from the datatype registry for extension msf. +galaxy.datatypes.registry DEBUG 2024-02-23 13:13:45,100 [pN:main,p:74649,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension markx0. +galaxy.datatypes.registry DEBUG 2024-02-23 13:13:45,100 [pN:main,p:74649,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension markx1. +galaxy.datatypes.registry DEBUG 2024-02-23 13:13:45,100 [pN:main,p:74649,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension markx10. +galaxy.datatypes.registry DEBUG 2024-02-23 13:13:45,100 [pN:main,p:74649,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension markx2. +galaxy.datatypes.registry DEBUG 2024-02-23 13:13:45,100 [pN:main,p:74649,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension markx3. +galaxy.datatypes.registry DEBUG 2024-02-23 13:13:45,100 [pN:main,p:74649,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension pair. +galaxy.datatypes.registry DEBUG 2024-02-23 13:13:45,100 [pN:main,p:74649,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension score. +galaxy.datatypes.registry DEBUG 2024-02-23 13:13:45,100 [pN:main,p:74649,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension srs. +galaxy.datatypes.registry DEBUG 2024-02-23 13:13:45,101 [pN:main,p:74649,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension srspair. +galaxy.datatypes.registry DEBUG 2024-02-23 13:13:45,101 [pN:main,p:74649,tN:MainThread] Retrieved datatype module galaxy.datatypes.annotation:SnapHmm from the datatype registry for extension snaphmm. +galaxy.datatypes.registry DEBUG 2024-02-23 13:13:45,101 [pN:main,p:74649,tN:MainThread] Retrieved datatype module galaxy.datatypes.annotation:Augustus from the datatype registry for extension augustus. +galaxy.datatypes.registry DEBUG 2024-02-23 13:13:45,101 [pN:main,p:74649,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:ICM from the datatype registry for extension icm. +galaxy.datatypes.registry DEBUG 2024-02-23 13:13:45,101 [pN:main,p:74649,tN:MainThread] Retrieved datatype module galaxy.datatypes.msa:InfernalCM from the datatype registry for extension cm. +galaxy.datatypes.registry DEBUG 2024-02-23 13:13:45,102 [pN:main,p:74649,tN:MainThread] Retrieved datatype module galaxy.datatypes.msa:Hmmer2 from the datatype registry for extension hmm2. +galaxy.datatypes.registry DEBUG 2024-02-23 13:13:45,102 [pN:main,p:74649,tN:MainThread] Retrieved datatype module galaxy.datatypes.msa:Hmmer3 from the datatype registry for extension hmm3. +galaxy.datatypes.registry DEBUG 2024-02-23 13:13:45,102 [pN:main,p:74649,tN:MainThread] Retrieved datatype module galaxy.datatypes.msa:Stockholm_1_0 from the datatype registry for extension stockholm. +galaxy.datatypes.registry DEBUG 2024-02-23 13:13:45,102 [pN:main,p:74649,tN:MainThread] Retrieved datatype module galaxy.datatypes.msa:MauveXmfa from the datatype registry for extension xmfa. +galaxy.datatypes.registry DEBUG 2024-02-23 13:13:45,102 [pN:main,p:74649,tN:MainThread] Retrieved datatype module galaxy.datatypes.microarrays:Cel from the datatype registry for extension cel. +galaxy.datatypes.registry DEBUG 2024-02-23 13:13:45,102 [pN:main,p:74649,tN:MainThread] Retrieved datatype module galaxy.datatypes.microarrays:Gpr from the datatype registry for extension gpr. +galaxy.datatypes.registry DEBUG 2024-02-23 13:13:45,103 [pN:main,p:74649,tN:MainThread] Retrieved datatype module galaxy.datatypes.microarrays:Gal from the datatype registry for extension gal. +galaxy.datatypes.registry DEBUG 2024-02-23 13:13:45,103 [pN:main,p:74649,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:RDS from the datatype registry for extension rds. +galaxy.datatypes.registry DEBUG 2024-02-23 13:13:45,103 [pN:main,p:74649,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:RDS from the datatype registry for extension phyloseq. +galaxy.datatypes.registry DEBUG 2024-02-23 13:13:45,103 [pN:main,p:74649,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:RData from the datatype registry for extension rdata. +galaxy.datatypes.registry DEBUG 2024-02-23 13:13:45,103 [pN:main,p:74649,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:RData from the datatype registry for extension rdata.sce. +galaxy.datatypes.registry DEBUG 2024-02-23 13:13:45,103 [pN:main,p:74649,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:RData from the datatype registry for extension rdata.xcms.raw. +galaxy.datatypes.registry DEBUG 2024-02-23 13:13:45,103 [pN:main,p:74649,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:RData from the datatype registry for extension rdata.msnbase.raw. +galaxy.datatypes.registry DEBUG 2024-02-23 13:13:45,103 [pN:main,p:74649,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:RData from the datatype registry for extension rdata.xcms.findchrompeaks. +galaxy.datatypes.registry DEBUG 2024-02-23 13:13:45,104 [pN:main,p:74649,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:RData from the datatype registry for extension rdata.xcms.group. +galaxy.datatypes.registry DEBUG 2024-02-23 13:13:45,104 [pN:main,p:74649,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:RData from the datatype registry for extension rdata.xcms.retcor. +galaxy.datatypes.registry DEBUG 2024-02-23 13:13:45,104 [pN:main,p:74649,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:RData from the datatype registry for extension rdata.xcms.fillpeaks. +galaxy.datatypes.registry DEBUG 2024-02-23 13:13:45,104 [pN:main,p:74649,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:RData from the datatype registry for extension rdata.camera.positive. +galaxy.datatypes.registry DEBUG 2024-02-23 13:13:45,104 [pN:main,p:74649,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:RData from the datatype registry for extension rdata.camera.negative. +galaxy.datatypes.registry DEBUG 2024-02-23 13:13:45,104 [pN:main,p:74649,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:RData from the datatype registry for extension rdata.camera.quick. +galaxy.datatypes.registry DEBUG 2024-02-23 13:13:45,105 [pN:main,p:74649,tN:MainThread] Retrieved datatype module galaxy.datatypes.hdf5:HDF5SummarizedExperiment from the datatype registry for extension rdata.se. +galaxy.datatypes.registry DEBUG 2024-02-23 13:13:45,105 [pN:main,p:74649,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:Binary from the datatype registry for extension rdock_as. +galaxy.datatypes.registry DEBUG 2024-02-23 13:13:45,105 [pN:main,p:74649,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:OxliCountGraph from the datatype registry for extension oxlicg. +galaxy.datatypes.registry DEBUG 2024-02-23 13:13:45,105 [pN:main,p:74649,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:OxliNodeGraph from the datatype registry for extension oxling. +galaxy.datatypes.registry DEBUG 2024-02-23 13:13:45,105 [pN:main,p:74649,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:OxliTagSet from the datatype registry for extension oxlits. +galaxy.datatypes.registry DEBUG 2024-02-23 13:13:45,105 [pN:main,p:74649,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:OxliStopTags from the datatype registry for extension oxlist. +galaxy.datatypes.registry DEBUG 2024-02-23 13:13:45,105 [pN:main,p:74649,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:OxliSubset from the datatype registry for extension oxliss. +galaxy.datatypes.registry DEBUG 2024-02-23 13:13:45,105 [pN:main,p:74649,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:OxliGraphLabels from the datatype registry for extension oxligl. +galaxy.datatypes.registry DEBUG 2024-02-23 13:13:45,107 [pN:main,p:74649,tN:MainThread] Retrieved datatype module galaxy.datatypes.constructive_solid_geometry:STL from the datatype registry for extension stl. +galaxy.datatypes.registry DEBUG 2024-02-23 13:13:45,107 [pN:main,p:74649,tN:MainThread] Retrieved datatype module galaxy.datatypes.constructive_solid_geometry:PlyAscii from the datatype registry for extension plyascii. +galaxy.datatypes.registry DEBUG 2024-02-23 13:13:45,107 [pN:main,p:74649,tN:MainThread] Retrieved datatype module galaxy.datatypes.constructive_solid_geometry:PlyBinary from the datatype registry for extension plybinary. +galaxy.datatypes.registry DEBUG 2024-02-23 13:13:45,107 [pN:main,p:74649,tN:MainThread] Retrieved datatype module galaxy.datatypes.constructive_solid_geometry:VtkAscii from the datatype registry for extension vtkascii. +galaxy.datatypes.registry DEBUG 2024-02-23 13:13:45,107 [pN:main,p:74649,tN:MainThread] Retrieved datatype module galaxy.datatypes.constructive_solid_geometry:VtkBinary from the datatype registry for extension vtkbinary. +galaxy.datatypes.registry DEBUG 2024-02-23 13:13:45,107 [pN:main,p:74649,tN:MainThread] Retrieved datatype module galaxy.datatypes.text:Biom1 from the datatype registry for extension biom1. +galaxy.datatypes.registry DEBUG 2024-02-23 13:13:45,107 [pN:main,p:74649,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:Biom2 from the datatype registry for extension biom2. +galaxy.datatypes.registry DEBUG 2024-02-23 13:13:45,108 [pN:main,p:74649,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:MashSketch from the datatype registry for extension msh. +galaxy.datatypes.registry DEBUG 2024-02-23 13:13:45,108 [pN:main,p:74649,tN:MainThread] Retrieved datatype module galaxy.datatypes.interval:ScIdx from the datatype registry for extension scidx. +galaxy.datatypes.registry DEBUG 2024-02-23 13:13:45,110 [pN:main,p:74649,tN:MainThread] Retrieved datatype module galaxy.datatypes.molecules:SMILES from the datatype registry for extension smi. +galaxy.datatypes.registry DEBUG 2024-02-23 13:13:45,110 [pN:main,p:74649,tN:MainThread] Retrieved datatype module galaxy.datatypes.molecules:SDF from the datatype registry for extension sdf. +galaxy.datatypes.registry DEBUG 2024-02-23 13:13:45,110 [pN:main,p:74649,tN:MainThread] Retrieved datatype module galaxy.datatypes.molecules:InChI from the datatype registry for extension inchi. +galaxy.datatypes.registry DEBUG 2024-02-23 13:13:45,110 [pN:main,p:74649,tN:MainThread] Retrieved datatype module galaxy.datatypes.molecules:MOL from the datatype registry for extension mol. +galaxy.datatypes.registry DEBUG 2024-02-23 13:13:45,110 [pN:main,p:74649,tN:MainThread] Retrieved datatype module galaxy.datatypes.molecules:MOL2 from the datatype registry for extension mol2. +galaxy.datatypes.registry DEBUG 2024-02-23 13:13:45,110 [pN:main,p:74649,tN:MainThread] Retrieved datatype module galaxy.datatypes.molecules:CML from the datatype registry for extension cml. +galaxy.datatypes.registry DEBUG 2024-02-23 13:13:45,110 [pN:main,p:74649,tN:MainThread] Retrieved datatype module galaxy.datatypes.molecules:FPS from the datatype registry for extension fps. +galaxy.datatypes.registry DEBUG 2024-02-23 13:13:45,111 [pN:main,p:74649,tN:MainThread] Retrieved datatype module galaxy.datatypes.molecules:OBFS from the datatype registry for extension obfs. +galaxy.datatypes.registry DEBUG 2024-02-23 13:13:45,111 [pN:main,p:74649,tN:MainThread] Retrieved datatype module galaxy.datatypes.molecules:DRF from the datatype registry for extension drf. +galaxy.datatypes.registry DEBUG 2024-02-23 13:13:45,111 [pN:main,p:74649,tN:MainThread] Retrieved datatype module galaxy.datatypes.molecules:PHAR from the datatype registry for extension phar. +galaxy.datatypes.registry DEBUG 2024-02-23 13:13:45,111 [pN:main,p:74649,tN:MainThread] Retrieved datatype module galaxy.datatypes.molecules:PDB from the datatype registry for extension pdb. +galaxy.datatypes.registry DEBUG 2024-02-23 13:13:45,111 [pN:main,p:74649,tN:MainThread] Retrieved datatype module galaxy.datatypes.molecules:PDBQT from the datatype registry for extension pdbqt. +galaxy.datatypes.registry DEBUG 2024-02-23 13:13:45,111 [pN:main,p:74649,tN:MainThread] Retrieved datatype module galaxy.datatypes.molecules:PQR from the datatype registry for extension pqr. +galaxy.datatypes.registry DEBUG 2024-02-23 13:13:45,111 [pN:main,p:74649,tN:MainThread] Retrieved datatype module galaxy.datatypes.molecules:Cell from the datatype registry for extension cell. +galaxy.datatypes.registry DEBUG 2024-02-23 13:13:45,111 [pN:main,p:74649,tN:MainThread] Retrieved datatype module galaxy.datatypes.molecules:CIF from the datatype registry for extension cif. +galaxy.datatypes.registry DEBUG 2024-02-23 13:13:45,111 [pN:main,p:74649,tN:MainThread] Retrieved datatype module galaxy.datatypes.molecules:XYZ from the datatype registry for extension xyz. +galaxy.datatypes.registry DEBUG 2024-02-23 13:13:45,111 [pN:main,p:74649,tN:MainThread] Retrieved datatype module galaxy.datatypes.molecules:ExtendedXYZ from the datatype registry for extension extxyz. +galaxy.datatypes.registry DEBUG 2024-02-23 13:13:45,112 [pN:main,p:74649,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:Trr from the datatype registry for extension trr. +galaxy.datatypes.registry DEBUG 2024-02-23 13:13:45,112 [pN:main,p:74649,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:Dcd from the datatype registry for extension dcd. +galaxy.datatypes.registry DEBUG 2024-02-23 13:13:45,112 [pN:main,p:74649,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension top. +galaxy.datatypes.registry DEBUG 2024-02-23 13:13:45,112 [pN:main,p:74649,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension prmtop. +galaxy.datatypes.registry DEBUG 2024-02-23 13:13:45,112 [pN:main,p:74649,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension itp. +galaxy.datatypes.registry DEBUG 2024-02-23 13:13:45,112 [pN:main,p:74649,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension mdp. +galaxy.datatypes.registry DEBUG 2024-02-23 13:13:45,112 [pN:main,p:74649,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension ndx. +galaxy.datatypes.registry DEBUG 2024-02-23 13:13:45,112 [pN:main,p:74649,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension xvg. +galaxy.datatypes.registry DEBUG 2024-02-23 13:13:45,112 [pN:main,p:74649,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:Xtc from the datatype registry for extension xtc. +galaxy.datatypes.registry DEBUG 2024-02-23 13:13:45,113 [pN:main,p:74649,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:Cpt from the datatype registry for extension cpt. +galaxy.datatypes.registry DEBUG 2024-02-23 13:13:45,113 [pN:main,p:74649,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:Edr from the datatype registry for extension edr. +galaxy.datatypes.registry DEBUG 2024-02-23 13:13:45,113 [pN:main,p:74649,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:Binary from the datatype registry for extension tpr. +galaxy.datatypes.registry DEBUG 2024-02-23 13:13:45,113 [pN:main,p:74649,tN:MainThread] Retrieved datatype module galaxy.datatypes.molecules:GRO from the datatype registry for extension gro. +galaxy.datatypes.registry DEBUG 2024-02-23 13:13:45,113 [pN:main,p:74649,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension inpcrd. +galaxy.datatypes.registry DEBUG 2024-02-23 13:13:45,113 [pN:main,p:74649,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:Vel from the datatype registry for extension vel. +galaxy.datatypes.registry DEBUG 2024-02-23 13:13:45,113 [pN:main,p:74649,tN:MainThread] Retrieved datatype module galaxy.datatypes.molecules:grd from the datatype registry for extension grd. +galaxy.datatypes.registry DEBUG 2024-02-23 13:13:45,113 [pN:main,p:74649,tN:MainThread] Retrieved datatype module galaxy.datatypes.molecules:grdtgz from the datatype registry for extension grd.tgz. +galaxy.datatypes.registry DEBUG 2024-02-23 13:13:45,113 [pN:main,p:74649,tN:MainThread] Retrieved datatype module galaxy.datatypes.mothur:Otu from the datatype registry for extension mothur.otu. +galaxy.datatypes.registry DEBUG 2024-02-23 13:13:45,114 [pN:main,p:74649,tN:MainThread] Retrieved datatype module galaxy.datatypes.mothur:Otu from the datatype registry for extension mothur.list. +galaxy.datatypes.registry DEBUG 2024-02-23 13:13:45,114 [pN:main,p:74649,tN:MainThread] Retrieved datatype module galaxy.datatypes.mothur:Sabund from the datatype registry for extension mothur.sabund. +galaxy.datatypes.registry DEBUG 2024-02-23 13:13:45,114 [pN:main,p:74649,tN:MainThread] Retrieved datatype module galaxy.datatypes.mothur:Sabund from the datatype registry for extension mothur.rabund. +galaxy.datatypes.registry DEBUG 2024-02-23 13:13:45,114 [pN:main,p:74649,tN:MainThread] Retrieved datatype module galaxy.datatypes.mothur:GroupAbund from the datatype registry for extension mothur.shared. +galaxy.datatypes.registry DEBUG 2024-02-23 13:13:45,114 [pN:main,p:74649,tN:MainThread] Retrieved datatype module galaxy.datatypes.mothur:GroupAbund from the datatype registry for extension mothur.relabund. +galaxy.datatypes.registry DEBUG 2024-02-23 13:13:45,114 [pN:main,p:74649,tN:MainThread] Retrieved datatype module galaxy.datatypes.mothur:Names from the datatype registry for extension mothur.names. +galaxy.datatypes.registry DEBUG 2024-02-23 13:13:45,114 [pN:main,p:74649,tN:MainThread] Retrieved datatype module galaxy.datatypes.mothur:Group from the datatype registry for extension mothur.design. +galaxy.datatypes.registry DEBUG 2024-02-23 13:13:45,114 [pN:main,p:74649,tN:MainThread] Retrieved datatype module galaxy.datatypes.mothur:Summary from the datatype registry for extension mothur.summary. +galaxy.datatypes.registry DEBUG 2024-02-23 13:13:45,115 [pN:main,p:74649,tN:MainThread] Retrieved datatype module galaxy.datatypes.mothur:Group from the datatype registry for extension mothur.groups. +galaxy.datatypes.registry DEBUG 2024-02-23 13:13:45,115 [pN:main,p:74649,tN:MainThread] Retrieved datatype module galaxy.datatypes.mothur:Oligos from the datatype registry for extension mothur.oligos. +galaxy.datatypes.registry DEBUG 2024-02-23 13:13:45,115 [pN:main,p:74649,tN:MainThread] Retrieved datatype module galaxy.datatypes.sequence:Fasta from the datatype registry for extension mothur.align. +galaxy.datatypes.registry DEBUG 2024-02-23 13:13:45,115 [pN:main,p:74649,tN:MainThread] Retrieved datatype module galaxy.datatypes.mothur:AccNos from the datatype registry for extension mothur.accnos. +galaxy.datatypes.registry DEBUG 2024-02-23 13:13:45,115 [pN:main,p:74649,tN:MainThread] Retrieved datatype module galaxy.datatypes.mothur:AccNos from the datatype registry for extension mothur.otulabels. +galaxy.datatypes.registry DEBUG 2024-02-23 13:13:45,115 [pN:main,p:74649,tN:MainThread] Retrieved datatype module galaxy.datatypes.tabular:Tabular from the datatype registry for extension mothur.otu.corr. +galaxy.datatypes.registry DEBUG 2024-02-23 13:13:45,115 [pN:main,p:74649,tN:MainThread] Retrieved datatype module galaxy.datatypes.mothur:SecondaryStructureMap from the datatype registry for extension mothur.map. +galaxy.datatypes.registry DEBUG 2024-02-23 13:13:45,115 [pN:main,p:74649,tN:MainThread] Retrieved datatype module galaxy.datatypes.mothur:AlignCheck from the datatype registry for extension mothur.align.check. +galaxy.datatypes.registry DEBUG 2024-02-23 13:13:45,115 [pN:main,p:74649,tN:MainThread] Retrieved datatype module galaxy.datatypes.mothur:AlignReport from the datatype registry for extension mothur.align.report. +galaxy.datatypes.registry DEBUG 2024-02-23 13:13:45,116 [pN:main,p:74649,tN:MainThread] Retrieved datatype module galaxy.datatypes.mothur:LaneMask from the datatype registry for extension mothur.filter. +galaxy.datatypes.registry DEBUG 2024-02-23 13:13:45,116 [pN:main,p:74649,tN:MainThread] Retrieved datatype module galaxy.datatypes.mothur:DistanceMatrix from the datatype registry for extension mothur.dist. +galaxy.datatypes.registry DEBUG 2024-02-23 13:13:45,116 [pN:main,p:74649,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension mothur.tre. +galaxy.datatypes.registry DEBUG 2024-02-23 13:13:45,116 [pN:main,p:74649,tN:MainThread] Retrieved datatype module galaxy.datatypes.mothur:PairwiseDistanceMatrix from the datatype registry for extension mothur.pair.dist. +galaxy.datatypes.registry DEBUG 2024-02-23 13:13:45,116 [pN:main,p:74649,tN:MainThread] Retrieved datatype module galaxy.datatypes.mothur:SquareDistanceMatrix from the datatype registry for extension mothur.square.dist. +galaxy.datatypes.registry DEBUG 2024-02-23 13:13:45,116 [pN:main,p:74649,tN:MainThread] Retrieved datatype module galaxy.datatypes.mothur:LowerTriangleDistanceMatrix from the datatype registry for extension mothur.lower.dist. +galaxy.datatypes.registry DEBUG 2024-02-23 13:13:45,116 [pN:main,p:74649,tN:MainThread] Retrieved datatype module galaxy.datatypes.mothur:RefTaxonomy from the datatype registry for extension mothur.ref.taxonomy. +galaxy.datatypes.registry DEBUG 2024-02-23 13:13:45,116 [pN:main,p:74649,tN:MainThread] Retrieved datatype module galaxy.datatypes.mothur:RefTaxonomy from the datatype registry for extension mothur.seq.taxonomy. +galaxy.datatypes.registry DEBUG 2024-02-23 13:13:45,116 [pN:main,p:74649,tN:MainThread] Retrieved datatype module galaxy.datatypes.mothur:RefTaxonomy from the datatype registry for extension mothur.rdp.taxonomy. +galaxy.datatypes.registry DEBUG 2024-02-23 13:13:45,117 [pN:main,p:74649,tN:MainThread] Retrieved datatype module galaxy.datatypes.mothur:ConsensusTaxonomy from the datatype registry for extension mothur.cons.taxonomy. +galaxy.datatypes.registry DEBUG 2024-02-23 13:13:45,117 [pN:main,p:74649,tN:MainThread] Retrieved datatype module galaxy.datatypes.mothur:TaxonomySummary from the datatype registry for extension mothur.tax.summary. +galaxy.datatypes.registry DEBUG 2024-02-23 13:13:45,117 [pN:main,p:74649,tN:MainThread] Retrieved datatype module galaxy.datatypes.mothur:Frequency from the datatype registry for extension mothur.freq. +galaxy.datatypes.registry DEBUG 2024-02-23 13:13:45,117 [pN:main,p:74649,tN:MainThread] Retrieved datatype module galaxy.datatypes.mothur:Quantile from the datatype registry for extension mothur.quan. +galaxy.datatypes.registry DEBUG 2024-02-23 13:13:45,117 [pN:main,p:74649,tN:MainThread] Retrieved datatype module galaxy.datatypes.mothur:Quantile from the datatype registry for extension mothur.filtered.quan. +galaxy.datatypes.registry DEBUG 2024-02-23 13:13:45,117 [pN:main,p:74649,tN:MainThread] Retrieved datatype module galaxy.datatypes.mothur:Quantile from the datatype registry for extension mothur.masked.quan. +galaxy.datatypes.registry DEBUG 2024-02-23 13:13:45,117 [pN:main,p:74649,tN:MainThread] Retrieved datatype module galaxy.datatypes.mothur:Quantile from the datatype registry for extension mothur.filtered.masked.quan. +galaxy.datatypes.registry DEBUG 2024-02-23 13:13:45,117 [pN:main,p:74649,tN:MainThread] Retrieved datatype module galaxy.datatypes.mothur:Axes from the datatype registry for extension mothur.axes. +galaxy.datatypes.registry DEBUG 2024-02-23 13:13:45,117 [pN:main,p:74649,tN:MainThread] Retrieved datatype module galaxy.datatypes.mothur:SffFlow from the datatype registry for extension mothur.sff.flow. +galaxy.datatypes.registry DEBUG 2024-02-23 13:13:45,118 [pN:main,p:74649,tN:MainThread] Retrieved datatype module galaxy.datatypes.mothur:CountTable from the datatype registry for extension mothur.count_table. +galaxy.datatypes.registry DEBUG 2024-02-23 13:13:45,118 [pN:main,p:74649,tN:MainThread] Retrieved datatype module galaxy.datatypes.neo4j:Neo4jDB from the datatype registry for extension neostore. +galaxy.datatypes.registry DEBUG 2024-02-23 13:13:45,118 [pN:main,p:74649,tN:MainThread] Retrieved datatype module galaxy.datatypes.neo4j:Neo4jDBzip from the datatype registry for extension neostore.zip. +galaxy.datatypes.registry DEBUG 2024-02-23 13:13:45,118 [pN:main,p:74649,tN:MainThread] Retrieved datatype module galaxy.datatypes.tracks:UCSCTrackHub from the datatype registry for extension trackhub. +galaxy.datatypes.registry DEBUG 2024-02-23 13:13:45,119 [pN:main,p:74649,tN:MainThread] Retrieved datatype module galaxy.datatypes.blast:BlastXml from the datatype registry for extension blastxml. +galaxy.datatypes.registry DEBUG 2024-02-23 13:13:45,119 [pN:main,p:74649,tN:MainThread] Retrieved datatype module galaxy.datatypes.blast:BlastNucDb from the datatype registry for extension blastdbn. +galaxy.datatypes.registry DEBUG 2024-02-23 13:13:45,120 [pN:main,p:74649,tN:MainThread] Retrieved datatype module galaxy.datatypes.blast:BlastProtDb from the datatype registry for extension blastdbp. +galaxy.datatypes.registry DEBUG 2024-02-23 13:13:45,120 [pN:main,p:74649,tN:MainThread] Retrieved datatype module galaxy.datatypes.blast:BlastDomainDb from the datatype registry for extension blastdbd. +galaxy.datatypes.registry DEBUG 2024-02-23 13:13:45,120 [pN:main,p:74649,tN:MainThread] Retrieved datatype module galaxy.datatypes.blast:LastDb from the datatype registry for extension lastdb. +galaxy.datatypes.registry DEBUG 2024-02-23 13:13:45,120 [pN:main,p:74649,tN:MainThread] Retrieved datatype module galaxy.datatypes.blast:BlastNucDb5 from the datatype registry for extension blastdbn5. +galaxy.datatypes.registry DEBUG 2024-02-23 13:13:45,120 [pN:main,p:74649,tN:MainThread] Retrieved datatype module galaxy.datatypes.blast:BlastProtDb5 from the datatype registry for extension blastdbp5. +galaxy.datatypes.registry DEBUG 2024-02-23 13:13:45,120 [pN:main,p:74649,tN:MainThread] Retrieved datatype module galaxy.datatypes.blast:BlastDomainDb5 from the datatype registry for extension blastdbd5. +galaxy.datatypes.registry DEBUG 2024-02-23 13:13:45,120 [pN:main,p:74649,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:GenericAsn1 from the datatype registry for extension maskinfo-asn1. +galaxy.datatypes.registry DEBUG 2024-02-23 13:13:45,121 [pN:main,p:74649,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:GenericAsn1Binary from the datatype registry for extension maskinfo-asn1-binary. +galaxy.datatypes.registry DEBUG 2024-02-23 13:13:45,121 [pN:main,p:74649,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:GenericAsn1 from the datatype registry for extension pssm-asn1. +galaxy.datatypes.registry DEBUG 2024-02-23 13:13:45,121 [pN:main,p:74649,tN:MainThread] Retrieved datatype module galaxy.datatypes.plant_tribes:PlantTribesKsComponents from the datatype registry for extension ptkscmp. +galaxy.datatypes.registry DEBUG 2024-02-23 13:13:45,121 [pN:main,p:74649,tN:MainThread] Retrieved datatype module galaxy.datatypes.plant_tribes:Smat from the datatype registry for extension smat. +galaxy.datatypes.registry DEBUG 2024-02-23 13:13:45,121 [pN:main,p:74649,tN:MainThread] Retrieved datatype module galaxy.datatypes.genetics:GenotypeMatrix from the datatype registry for extension alohomora_gts. +galaxy.datatypes.registry DEBUG 2024-02-23 13:13:45,122 [pN:main,p:74649,tN:MainThread] Retrieved datatype module galaxy.datatypes.tabular:Tabular from the datatype registry for extension alohomora_map. +galaxy.datatypes.registry DEBUG 2024-02-23 13:13:45,122 [pN:main,p:74649,tN:MainThread] Retrieved datatype module galaxy.datatypes.tabular:Tabular from the datatype registry for extension alohomora_maf. +galaxy.datatypes.registry DEBUG 2024-02-23 13:13:45,122 [pN:main,p:74649,tN:MainThread] Retrieved datatype module galaxy.datatypes.tabular:Tabular from the datatype registry for extension alohomora_ped. +galaxy.datatypes.registry DEBUG 2024-02-23 13:13:45,122 [pN:main,p:74649,tN:MainThread] Retrieved datatype module galaxy.datatypes.tabular:Tabular from the datatype registry for extension linkage_pedin. +galaxy.datatypes.registry DEBUG 2024-02-23 13:13:45,122 [pN:main,p:74649,tN:MainThread] Retrieved datatype module galaxy.datatypes.genetics:DataIn from the datatype registry for extension linkage_datain. +galaxy.datatypes.registry DEBUG 2024-02-23 13:13:45,122 [pN:main,p:74649,tN:MainThread] Retrieved datatype module galaxy.datatypes.genetics:MarkerMap from the datatype registry for extension linkage_map. +galaxy.datatypes.registry DEBUG 2024-02-23 13:13:45,122 [pN:main,p:74649,tN:MainThread] Retrieved datatype module galaxy.datatypes.tabular:Tabular from the datatype registry for extension allegro_ihaplo. +galaxy.datatypes.registry DEBUG 2024-02-23 13:13:45,122 [pN:main,p:74649,tN:MainThread] Retrieved datatype module galaxy.datatypes.tabular:Tabular from the datatype registry for extension allegro_descent. +galaxy.datatypes.registry DEBUG 2024-02-23 13:13:45,122 [pN:main,p:74649,tN:MainThread] Retrieved datatype module galaxy.datatypes.genetics:AllegroLOD from the datatype registry for extension allegro_fparam. +galaxy.datatypes.registry DEBUG 2024-02-23 13:13:45,123 [pN:main,p:74649,tN:MainThread] Retrieved datatype module galaxy.datatypes.genetics:IdeasPre from the datatype registry for extension ideaspre. +galaxy.datatypes.registry DEBUG 2024-02-23 13:13:45,123 [pN:main,p:74649,tN:MainThread] Retrieved datatype module galaxy.datatypes.xml:Sbml from the datatype registry for extension sbml. +galaxy.datatypes.registry DEBUG 2024-02-23 13:13:45,124 [pN:main,p:74649,tN:MainThread] Retrieved datatype module galaxy.datatypes.spaln:SpalnNuclDb from the datatype registry for extension spalndbnp. +galaxy.datatypes.registry DEBUG 2024-02-23 13:13:45,124 [pN:main,p:74649,tN:MainThread] Retrieved datatype module galaxy.datatypes.spaln:SpalnProtDb from the datatype registry for extension spalndba. +galaxy.datatypes.registry DEBUG 2024-02-23 13:13:45,125 [pN:main,p:74649,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:RDS from the datatype registry for extension dada2_dada. +galaxy.datatypes.registry DEBUG 2024-02-23 13:13:45,125 [pN:main,p:74649,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:RDS from the datatype registry for extension dada2_errorrates. +galaxy.datatypes.registry DEBUG 2024-02-23 13:13:45,125 [pN:main,p:74649,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:RDS from the datatype registry for extension dada2_mergepairs. +galaxy.datatypes.registry DEBUG 2024-02-23 13:13:45,125 [pN:main,p:74649,tN:MainThread] Retrieved datatype module galaxy.datatypes.tabular:Tabular from the datatype registry for extension dada2_sequencetable. +galaxy.datatypes.registry DEBUG 2024-02-23 13:13:45,125 [pN:main,p:74649,tN:MainThread] Retrieved datatype module galaxy.datatypes.tabular:Tabular from the datatype registry for extension dada2_uniques. +galaxy.datatypes.registry DEBUG 2024-02-23 13:13:45,125 [pN:main,p:74649,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:RDS from the datatype registry for extension ampvis2. +galaxy.datatypes.registry DEBUG 2024-02-23 13:13:45,126 [pN:main,p:74649,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:Binary from the datatype registry for extension ckpt. +galaxy.datatypes.registry DEBUG 2024-02-23 13:13:45,126 [pN:main,p:74649,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:Binary from the datatype registry for extension tgz. +galaxy.datatypes.registry DEBUG 2024-02-23 13:13:45,128 [pN:main,p:74649,tN:MainThread] Retrieved datatype module galaxy.datatypes.media:Wav from the datatype registry for extension wav. +galaxy.datatypes.registry DEBUG 2024-02-23 13:13:45,128 [pN:main,p:74649,tN:MainThread] Retrieved datatype module galaxy.datatypes.media:Mp3 from the datatype registry for extension mp3. +galaxy.datatypes.registry DEBUG 2024-02-23 13:13:45,128 [pN:main,p:74649,tN:MainThread] Retrieved datatype module galaxy.datatypes.media:Mkv from the datatype registry for extension mkv. +galaxy.datatypes.registry DEBUG 2024-02-23 13:13:45,129 [pN:main,p:74649,tN:MainThread] Retrieved datatype module galaxy.datatypes.media:Mp4 from the datatype registry for extension mp4. +galaxy.datatypes.registry DEBUG 2024-02-23 13:13:45,129 [pN:main,p:74649,tN:MainThread] Retrieved datatype module galaxy.datatypes.media:Flv from the datatype registry for extension flv. +galaxy.datatypes.registry DEBUG 2024-02-23 13:13:45,129 [pN:main,p:74649,tN:MainThread] Retrieved datatype module galaxy.datatypes.media:Mpg from the datatype registry for extension mpg. +galaxy.datatypes.registry DEBUG 2024-02-23 13:13:45,129 [pN:main,p:74649,tN:MainThread] Retrieved datatype module galaxy.datatypes.speech:TextGrid from the datatype registry for extension textgrid. +galaxy.datatypes.registry DEBUG 2024-02-23 13:13:45,129 [pN:main,p:74649,tN:MainThread] Retrieved datatype module galaxy.datatypes.speech:BPF from the datatype registry for extension par. +galaxy.datatypes.registry DEBUG 2024-02-23 13:13:45,129 [pN:main,p:74649,tN:MainThread] Retrieved datatype module galaxy.datatypes.tabular:Tabular from the datatype registry for extension ffindex. +galaxy.datatypes.registry DEBUG 2024-02-23 13:13:45,130 [pN:main,p:74649,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:Data from the datatype registry for extension ffdata. +galaxy.datatypes.registry DEBUG 2024-02-23 13:13:45,130 [pN:main,p:74649,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:Pretext from the datatype registry for extension pretext. +galaxy.datatypes.registry DEBUG 2024-02-23 13:13:45,130 [pN:main,p:74649,tN:MainThread] Retrieved datatype module galaxy.datatypes.text:Html from the datatype registry for extension immuneml_receptors.html. +galaxy.datatypes.registry DEBUG 2024-02-23 13:13:45,130 [pN:main,p:74649,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:HexrdMaterials from the datatype registry for extension hexrd.materials.h5. +galaxy.datatypes.registry DEBUG 2024-02-23 13:13:45,130 [pN:main,p:74649,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:Npz from the datatype registry for extension npz. +galaxy.datatypes.registry DEBUG 2024-02-23 13:13:45,130 [pN:main,p:74649,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:HexrdImagesNpz from the datatype registry for extension hexrd.images.npz. +galaxy.datatypes.registry DEBUG 2024-02-23 13:13:45,130 [pN:main,p:74649,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:HexrdEtaOmeNpz from the datatype registry for extension hexrd.eta_ome.npz. +galaxy.datatypes.registry DEBUG 2024-02-23 13:13:45,130 [pN:main,p:74649,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:Npz from the datatype registry for extension hexrd.scored_orientations.npz. +galaxy.datatypes.registry DEBUG 2024-02-23 13:13:45,130 [pN:main,p:74649,tN:MainThread] Retrieved datatype module galaxy.datatypes.tabular:Tabular from the datatype registry for extension hexrd.accepted_orientations. +galaxy.datatypes.registry DEBUG 2024-02-23 13:13:45,131 [pN:main,p:74649,tN:MainThread] Retrieved datatype module galaxy.datatypes.text:Yaml from the datatype registry for extension hexrd.yml. +galaxy.datatypes.registry DEBUG 2024-02-23 13:13:45,131 [pN:main,p:74649,tN:MainThread] Retrieved datatype module galaxy.datatypes.constructive_solid_geometry:NeperTess from the datatype registry for extension neper.tess. +galaxy.datatypes.registry DEBUG 2024-02-23 13:13:45,131 [pN:main,p:74649,tN:MainThread] Retrieved datatype module galaxy.datatypes.constructive_solid_geometry:NeperTesr from the datatype registry for extension neper.tesr. +galaxy.datatypes.registry DEBUG 2024-02-23 13:13:45,131 [pN:main,p:74649,tN:MainThread] Retrieved datatype module galaxy.datatypes.constructive_solid_geometry:NeperPoints from the datatype registry for extension neper.points. +galaxy.datatypes.registry DEBUG 2024-02-23 13:13:45,131 [pN:main,p:74649,tN:MainThread] Retrieved datatype module galaxy.datatypes.constructive_solid_geometry:NeperPointsTabular from the datatype registry for extension neper.points.tsv. +galaxy.datatypes.registry DEBUG 2024-02-23 13:13:45,131 [pN:main,p:74649,tN:MainThread] Retrieved datatype module galaxy.datatypes.constructive_solid_geometry:NeperMultiScaleCell from the datatype registry for extension neper.mscell. +galaxy.datatypes.registry DEBUG 2024-02-23 13:13:45,131 [pN:main,p:74649,tN:MainThread] Retrieved datatype module galaxy.datatypes.constructive_solid_geometry:GmshMsh from the datatype registry for extension gmsh.msh. +galaxy.datatypes.registry DEBUG 2024-02-23 13:13:45,131 [pN:main,p:74649,tN:MainThread] Retrieved datatype module galaxy.datatypes.constructive_solid_geometry:GmshGeo from the datatype registry for extension gmsh.geo. +galaxy.datatypes.registry DEBUG 2024-02-23 13:13:45,131 [pN:main,p:74649,tN:MainThread] Retrieved datatype module galaxy.datatypes.constructive_solid_geometry:ZsetGeof from the datatype registry for extension zset.geof. +galaxy.datatypes.registry DEBUG 2024-02-23 13:13:45,132 [pN:main,p:74649,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:Binary from the datatype registry for extension stl. +galaxy.datatypes.registry DEBUG 2024-02-23 13:13:45,132 [pN:main,p:74649,tN:MainThread] Overriding conflicting datatype with extension 'stl', using datatype from /scratch/rico/galaxy/lib/galaxy/config/sample/datatypes_conf.xml.sample. +galaxy.datatypes.registry DEBUG 2024-02-23 13:13:45,132 [pN:main,p:74649,tN:MainThread] Retrieved datatype module galaxy.datatypes.text:Text from the datatype registry for extension pov. +galaxy.datatypes.registry DEBUG 2024-02-23 13:13:45,132 [pN:main,p:74649,tN:MainThread] Retrieved datatype module galaxy.datatypes.text:PithyaResult from the datatype registry for extension pithya.result. +galaxy.datatypes.registry DEBUG 2024-02-23 13:13:45,132 [pN:main,p:74649,tN:MainThread] Retrieved datatype module galaxy.datatypes.text:PithyaProperty from the datatype registry for extension pithya.property. +galaxy.datatypes.registry DEBUG 2024-02-23 13:13:45,132 [pN:main,p:74649,tN:MainThread] Retrieved datatype module galaxy.datatypes.text:PithyaModel from the datatype registry for extension pithya.model. +galaxy.datatypes.registry DEBUG 2024-02-23 13:13:45,132 [pN:main,p:74649,tN:MainThread] Retrieved datatype module galaxy.datatypes.text:BCSLts from the datatype registry for extension bcsl.ts. +galaxy.datatypes.registry DEBUG 2024-02-23 13:13:45,132 [pN:main,p:74649,tN:MainThread] Retrieved datatype module galaxy.datatypes.text:BCSLmodel from the datatype registry for extension bcsl.model. +galaxy.datatypes.registry DEBUG 2024-02-23 13:13:45,132 [pN:main,p:74649,tN:MainThread] Retrieved datatype module galaxy.datatypes.text:StormSample from the datatype registry for extension storm.sample. +galaxy.datatypes.registry DEBUG 2024-02-23 13:13:45,132 [pN:main,p:74649,tN:MainThread] Retrieved datatype module galaxy.datatypes.text:StormCheck from the datatype registry for extension storm.check. +galaxy.datatypes.registry DEBUG 2024-02-23 13:13:45,133 [pN:main,p:74649,tN:MainThread] Retrieved datatype module galaxy.datatypes.text:CTLresult from the datatype registry for extension ctl.result. +galaxy.datatypes.registry DEBUG 2024-02-23 13:13:45,133 [pN:main,p:74649,tN:MainThread] Retrieved datatype module galaxy.datatypes.text:Castep from the datatype registry for extension castep. +galaxy.datatypes.registry DEBUG 2024-02-23 13:13:45,133 [pN:main,p:74649,tN:MainThread] Retrieved datatype module galaxy.datatypes.text:Param from the datatype registry for extension param. +galaxy.datatypes.registry DEBUG 2024-02-23 13:13:45,133 [pN:main,p:74649,tN:MainThread] Retrieved datatype module galaxy.datatypes.text:FormattedDensity from the datatype registry for extension den_fmt. +galaxy.datatypes.registry DEBUG 2024-02-23 13:13:45,133 [pN:main,p:74649,tN:MainThread] Retrieved datatype module galaxy.datatypes.larch:AthenaProject from the datatype registry for extension prj. +galaxy.datatypes.registry DEBUG 2024-02-23 13:13:45,133 [pN:main,p:74649,tN:MainThread] Retrieved datatype module galaxy.datatypes.larch:FEFFInput from the datatype registry for extension inp. +galaxy.datatypes.registry DEBUG 2024-02-23 13:13:45,134 [pN:main,p:74649,tN:MainThread] Retrieved datatype module galaxy.datatypes.tabular:CSV from the datatype registry for extension sp. +galaxy.datatypes.registry DEBUG 2024-02-23 13:13:45,134 [pN:main,p:74649,tN:MainThread] Retrieved datatype module galaxy.datatypes.tabular:CSV from the datatype registry for extension gds. +galaxy.datatypes.registry DEBUG 2024-02-23 13:13:45,134 [pN:main,p:74649,tN:MainThread] Retrieved datatype module galaxy.datatypes.tabular:CSV from the datatype registry for extension feff. +galaxy.datatypes.registry DEBUG 2024-02-23 13:13:45,134 [pN:main,p:74649,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension feffit. +galaxy.datatypes.registry DEBUG 2024-02-23 13:13:45,134 [pN:main,p:74649,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:Binary from the datatype registry for extension bil. +galaxy.datatypes.registry DEBUG 2024-02-23 13:13:45,134 [pN:main,p:74649,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension hdr. +galaxy.datatypes.registry DEBUG 2024-02-23 13:13:45,135 [pN:main,p:74649,tN:MainThread] Retrieved datatype module galaxy.datatypes.gis:Shapefile from the datatype registry for extension shp. +galaxy.datatypes.registry DEBUG 2024-02-23 13:13:45,135 [pN:main,p:74649,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:FITS from the datatype registry for extension fits. +galaxy.datatypes.registry DEBUG 2024-02-23 13:13:45,135 [pN:main,p:74649,tN:MainThread] Retrieved datatype module galaxy.datatypes.chain:Chain from the datatype registry for extension chain. +galaxy.datatypes.registry DEBUG 2024-02-23 13:13:45,136 [pN:main,p:74649,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.plant_tribes:PlantTribesKsComponents' +galaxy.datatypes.registry DEBUG 2024-02-23 13:13:45,136 [pN:main,p:74649,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.plant_tribes:Smat' +galaxy.datatypes.registry DEBUG 2024-02-23 13:13:45,136 [pN:main,p:74649,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.mothur:Sabund' +galaxy.datatypes.registry DEBUG 2024-02-23 13:13:45,136 [pN:main,p:74649,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.mothur:Otu' +galaxy.datatypes.registry DEBUG 2024-02-23 13:13:45,136 [pN:main,p:74649,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.mothur:GroupAbund' +galaxy.datatypes.registry DEBUG 2024-02-23 13:13:45,136 [pN:main,p:74649,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.mothur:SecondaryStructureMap' +galaxy.datatypes.registry DEBUG 2024-02-23 13:13:45,136 [pN:main,p:74649,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.mothur:LowerTriangleDistanceMatrix' +galaxy.datatypes.registry DEBUG 2024-02-23 13:13:45,136 [pN:main,p:74649,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.mothur:SquareDistanceMatrix' +galaxy.datatypes.registry DEBUG 2024-02-23 13:13:45,136 [pN:main,p:74649,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.mothur:PairwiseDistanceMatrix' +galaxy.datatypes.registry DEBUG 2024-02-23 13:13:45,136 [pN:main,p:74649,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.mothur:Oligos' +galaxy.datatypes.registry DEBUG 2024-02-23 13:13:45,136 [pN:main,p:74649,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.mothur:Quantile' +galaxy.datatypes.registry DEBUG 2024-02-23 13:13:45,136 [pN:main,p:74649,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.mothur:Frequency' +galaxy.datatypes.registry DEBUG 2024-02-23 13:13:45,136 [pN:main,p:74649,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.mothur:LaneMask' +galaxy.datatypes.registry DEBUG 2024-02-23 13:13:45,136 [pN:main,p:74649,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.mothur:RefTaxonomy' +galaxy.datatypes.registry DEBUG 2024-02-23 13:13:45,136 [pN:main,p:74649,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.mothur:Axes' +galaxy.datatypes.registry DEBUG 2024-02-23 13:13:45,136 [pN:main,p:74649,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.constructive_solid_geometry:PlyAscii' +galaxy.datatypes.registry DEBUG 2024-02-23 13:13:45,137 [pN:main,p:74649,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.constructive_solid_geometry:PlyBinary' +galaxy.datatypes.registry DEBUG 2024-02-23 13:13:45,137 [pN:main,p:74649,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.constructive_solid_geometry:VtkAscii' +galaxy.datatypes.registry DEBUG 2024-02-23 13:13:45,137 [pN:main,p:74649,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.constructive_solid_geometry:VtkBinary' +galaxy.datatypes.registry DEBUG 2024-02-23 13:13:45,137 [pN:main,p:74649,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.constructive_solid_geometry:NeperTess' +galaxy.datatypes.registry DEBUG 2024-02-23 13:13:45,137 [pN:main,p:74649,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.constructive_solid_geometry:NeperTesr' +galaxy.datatypes.registry DEBUG 2024-02-23 13:13:45,137 [pN:main,p:74649,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.constructive_solid_geometry:GmshMsh' +galaxy.datatypes.registry DEBUG 2024-02-23 13:13:45,137 [pN:main,p:74649,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.goldenpath:GoldenPath' +galaxy.datatypes.registry DEBUG 2024-02-23 13:13:45,137 [pN:main,p:74649,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.interval:ScIdx' +galaxy.datatypes.registry DEBUG 2024-02-23 13:13:45,137 [pN:main,p:74649,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.tabular:Vcf' +galaxy.datatypes.registry DEBUG 2024-02-23 13:13:45,137 [pN:main,p:74649,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.binary:JP2' +galaxy.datatypes.registry DEBUG 2024-02-23 13:13:45,137 [pN:main,p:74649,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.binary:TwoBit' +galaxy.datatypes.registry DEBUG 2024-02-23 13:13:45,137 [pN:main,p:74649,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.binary:GeminiSQLite' +galaxy.datatypes.registry DEBUG 2024-02-23 13:13:45,137 [pN:main,p:74649,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.binary:SQmass' +galaxy.datatypes.registry DEBUG 2024-02-23 13:13:45,137 [pN:main,p:74649,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.binary:MzSQlite' +galaxy.datatypes.registry DEBUG 2024-02-23 13:13:45,137 [pN:main,p:74649,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.binary:OSW' +galaxy.datatypes.registry DEBUG 2024-02-23 13:13:45,137 [pN:main,p:74649,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.binary:PQP' +galaxy.datatypes.registry DEBUG 2024-02-23 13:13:45,137 [pN:main,p:74649,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.binary:IdpDB' +galaxy.datatypes.registry DEBUG 2024-02-23 13:13:45,138 [pN:main,p:74649,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.binary:ElibSQlite' +galaxy.datatypes.registry DEBUG 2024-02-23 13:13:45,138 [pN:main,p:74649,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.binary:DlibSQlite' +galaxy.datatypes.registry DEBUG 2024-02-23 13:13:45,138 [pN:main,p:74649,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.binary:BlibSQlite' +galaxy.datatypes.registry DEBUG 2024-02-23 13:13:45,138 [pN:main,p:74649,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.binary:ChiraSQLite' +galaxy.datatypes.registry DEBUG 2024-02-23 13:13:45,138 [pN:main,p:74649,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.binary:CuffDiffSQlite' +galaxy.datatypes.registry DEBUG 2024-02-23 13:13:45,138 [pN:main,p:74649,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.binary:GAFASQLite' +galaxy.datatypes.registry DEBUG 2024-02-23 13:13:45,138 [pN:main,p:74649,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.binary:NcbiTaxonomySQlite' +galaxy.datatypes.registry DEBUG 2024-02-23 13:13:45,138 [pN:main,p:74649,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.binary:SQlite' +galaxy.datatypes.registry DEBUG 2024-02-23 13:13:45,138 [pN:main,p:74649,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.binary:H5MLM' +galaxy.datatypes.registry DEBUG 2024-02-23 13:13:45,138 [pN:main,p:74649,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.binary:Cool' +galaxy.datatypes.registry DEBUG 2024-02-23 13:13:45,138 [pN:main,p:74649,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.binary:MCool' +galaxy.datatypes.registry DEBUG 2024-02-23 13:13:45,138 [pN:main,p:74649,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.binary:Loom' +galaxy.datatypes.registry DEBUG 2024-02-23 13:13:45,138 [pN:main,p:74649,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.binary:Anndata' +galaxy.datatypes.registry DEBUG 2024-02-23 13:13:45,138 [pN:main,p:74649,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.binary:Biom2' +galaxy.datatypes.registry DEBUG 2024-02-23 13:13:45,138 [pN:main,p:74649,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.binary:HexrdMaterials' +galaxy.datatypes.registry DEBUG 2024-02-23 13:13:45,138 [pN:main,p:74649,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.binary:H5' +galaxy.datatypes.registry DEBUG 2024-02-23 13:13:45,138 [pN:main,p:74649,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.binary:Grib' +galaxy.datatypes.registry DEBUG 2024-02-23 13:13:45,139 [pN:main,p:74649,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.binary:HexrdImagesNpz' +galaxy.datatypes.registry DEBUG 2024-02-23 13:13:45,139 [pN:main,p:74649,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.binary:HexrdEtaOmeNpz' +galaxy.datatypes.registry DEBUG 2024-02-23 13:13:45,139 [pN:main,p:74649,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.binary:Npz' +galaxy.datatypes.registry DEBUG 2024-02-23 13:13:45,139 [pN:main,p:74649,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.binary:Bam' +galaxy.datatypes.registry DEBUG 2024-02-23 13:13:45,139 [pN:main,p:74649,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.binary:BamQuerynameSorted' +galaxy.datatypes.registry DEBUG 2024-02-23 13:13:45,139 [pN:main,p:74649,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.binary:BamNative' +galaxy.datatypes.registry DEBUG 2024-02-23 13:13:45,139 [pN:main,p:74649,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.binary:CRAM' +galaxy.datatypes.registry DEBUG 2024-02-23 13:13:45,139 [pN:main,p:74649,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.binary:Sff' +galaxy.datatypes.registry DEBUG 2024-02-23 13:13:45,139 [pN:main,p:74649,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.binary:Sra' +galaxy.datatypes.registry DEBUG 2024-02-23 13:13:45,139 [pN:main,p:74649,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.binary:NetCDF' +galaxy.datatypes.registry DEBUG 2024-02-23 13:13:45,139 [pN:main,p:74649,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.binary:DAA' +galaxy.datatypes.registry DEBUG 2024-02-23 13:13:45,139 [pN:main,p:74649,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.binary:RMA6' +galaxy.datatypes.registry DEBUG 2024-02-23 13:13:45,139 [pN:main,p:74649,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.binary:DMND' +galaxy.datatypes.registry DEBUG 2024-02-23 13:13:45,139 [pN:main,p:74649,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.binary:Parquet' +galaxy.datatypes.registry DEBUG 2024-02-23 13:13:45,139 [pN:main,p:74649,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.binary:BafTar' +galaxy.datatypes.registry DEBUG 2024-02-23 13:13:45,139 [pN:main,p:74649,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.binary:TdfTar' +galaxy.datatypes.registry DEBUG 2024-02-23 13:13:45,139 [pN:main,p:74649,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.binary:MassHunterTar' +galaxy.datatypes.registry DEBUG 2024-02-23 13:13:45,140 [pN:main,p:74649,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.binary:MassLynxTar' +galaxy.datatypes.registry DEBUG 2024-02-23 13:13:45,140 [pN:main,p:74649,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.binary:YepTar' +galaxy.datatypes.registry DEBUG 2024-02-23 13:13:45,140 [pN:main,p:74649,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.binary:WiffTar' +galaxy.datatypes.registry DEBUG 2024-02-23 13:13:45,140 [pN:main,p:74649,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.binary:Fast5ArchiveGz' +galaxy.datatypes.registry DEBUG 2024-02-23 13:13:45,140 [pN:main,p:74649,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.binary:Fast5ArchiveBz2' +galaxy.datatypes.registry DEBUG 2024-02-23 13:13:45,140 [pN:main,p:74649,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.binary:Fast5Archive' +galaxy.datatypes.registry DEBUG 2024-02-23 13:13:45,140 [pN:main,p:74649,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.binary:Meryldb' +galaxy.datatypes.registry DEBUG 2024-02-23 13:13:45,140 [pN:main,p:74649,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.binary:Bref3' +galaxy.datatypes.registry DEBUG 2024-02-23 13:13:45,140 [pN:main,p:74649,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.binary:PostgresqlArchive' +galaxy.datatypes.registry DEBUG 2024-02-23 13:13:45,140 [pN:main,p:74649,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.binary:ICM' +galaxy.datatypes.registry DEBUG 2024-02-23 13:13:45,140 [pN:main,p:74649,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.binary:Idat' +galaxy.datatypes.registry DEBUG 2024-02-23 13:13:45,140 [pN:main,p:74649,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.binary:Trr' +galaxy.datatypes.registry DEBUG 2024-02-23 13:13:45,140 [pN:main,p:74649,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.binary:Dcd' +galaxy.datatypes.registry DEBUG 2024-02-23 13:13:45,140 [pN:main,p:74649,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.binary:Xtc' +galaxy.datatypes.registry DEBUG 2024-02-23 13:13:45,140 [pN:main,p:74649,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.binary:Cpt' +galaxy.datatypes.registry DEBUG 2024-02-23 13:13:45,140 [pN:main,p:74649,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.binary:Edr' +galaxy.datatypes.registry DEBUG 2024-02-23 13:13:45,141 [pN:main,p:74649,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.binary:Vel' +galaxy.datatypes.registry DEBUG 2024-02-23 13:13:45,141 [pN:main,p:74649,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.binary:Xlsx' +galaxy.datatypes.registry DEBUG 2024-02-23 13:13:45,141 [pN:main,p:74649,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.qiime2:QIIME2Metadata' +galaxy.datatypes.registry DEBUG 2024-02-23 13:13:45,141 [pN:main,p:74649,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.qiime2:QIIME2Artifact' +galaxy.datatypes.registry DEBUG 2024-02-23 13:13:45,141 [pN:main,p:74649,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.qiime2:QIIME2Visualization' +galaxy.datatypes.registry DEBUG 2024-02-23 13:13:45,141 [pN:main,p:74649,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.binary:CompressedZipArchive' +galaxy.datatypes.registry DEBUG 2024-02-23 13:13:45,141 [pN:main,p:74649,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.binary:Pretext' +galaxy.datatypes.registry DEBUG 2024-02-23 13:13:45,141 [pN:main,p:74649,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.annotation:Augustus' +galaxy.datatypes.registry DEBUG 2024-02-23 13:13:45,141 [pN:main,p:74649,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.xml:Owl' +galaxy.datatypes.registry DEBUG 2024-02-23 13:13:45,141 [pN:main,p:74649,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.chain:Chain' +galaxy.datatypes.registry DEBUG 2024-02-23 13:13:45,141 [pN:main,p:74649,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.triples:Rdf' +galaxy.datatypes.registry DEBUG 2024-02-23 13:13:45,141 [pN:main,p:74649,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.blast:BlastXml' +galaxy.datatypes.registry DEBUG 2024-02-23 13:13:45,141 [pN:main,p:74649,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.images:Gifti' +galaxy.datatypes.registry DEBUG 2024-02-23 13:13:45,141 [pN:main,p:74649,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.xml:Phyloxml' +galaxy.datatypes.registry DEBUG 2024-02-23 13:13:45,141 [pN:main,p:74649,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.xml:Dzi' +galaxy.datatypes.registry DEBUG 2024-02-23 13:13:45,142 [pN:main,p:74649,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.xml:Sbml' +galaxy.datatypes.registry DEBUG 2024-02-23 13:13:45,142 [pN:main,p:74649,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.proteomics:Dta2d' +galaxy.datatypes.registry DEBUG 2024-02-23 13:13:45,142 [pN:main,p:74649,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.proteomics:Edta' +galaxy.datatypes.registry DEBUG 2024-02-23 13:13:45,142 [pN:main,p:74649,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.proteomics:ConsensusXML' +galaxy.datatypes.registry DEBUG 2024-02-23 13:13:45,142 [pN:main,p:74649,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.proteomics:IdXML' +galaxy.datatypes.registry DEBUG 2024-02-23 13:13:45,142 [pN:main,p:74649,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.proteomics:FeatureXML' +galaxy.datatypes.registry DEBUG 2024-02-23 13:13:45,142 [pN:main,p:74649,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.proteomics:MascotXML' +galaxy.datatypes.registry DEBUG 2024-02-23 13:13:45,142 [pN:main,p:74649,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.proteomics:Mgf' +galaxy.datatypes.registry DEBUG 2024-02-23 13:13:45,142 [pN:main,p:74649,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.proteomics:Ms2' +galaxy.datatypes.registry DEBUG 2024-02-23 13:13:45,142 [pN:main,p:74649,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.proteomics:Msp' +galaxy.datatypes.registry DEBUG 2024-02-23 13:13:45,142 [pN:main,p:74649,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.proteomics:MzData' +galaxy.datatypes.registry DEBUG 2024-02-23 13:13:45,142 [pN:main,p:74649,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.proteomics:MzIdentML' +galaxy.datatypes.registry DEBUG 2024-02-23 13:13:45,142 [pN:main,p:74649,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.proteomics:MzML' +galaxy.datatypes.registry DEBUG 2024-02-23 13:13:45,142 [pN:main,p:74649,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.proteomics:MzQuantML' +galaxy.datatypes.registry DEBUG 2024-02-23 13:13:45,142 [pN:main,p:74649,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.proteomics:MzTab' +galaxy.datatypes.registry DEBUG 2024-02-23 13:13:45,142 [pN:main,p:74649,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.proteomics:MzTab2' +galaxy.datatypes.registry DEBUG 2024-02-23 13:13:45,143 [pN:main,p:74649,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.proteomics:ParamXml' +galaxy.datatypes.registry DEBUG 2024-02-23 13:13:45,143 [pN:main,p:74649,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.proteomics:MzXML' +galaxy.datatypes.registry DEBUG 2024-02-23 13:13:45,143 [pN:main,p:74649,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.proteomics:NmrML' +galaxy.datatypes.registry DEBUG 2024-02-23 13:13:45,143 [pN:main,p:74649,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.proteomics:Kroenik' +galaxy.datatypes.registry DEBUG 2024-02-23 13:13:45,143 [pN:main,p:74649,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.proteomics:PepList' +galaxy.datatypes.registry DEBUG 2024-02-23 13:13:45,143 [pN:main,p:74649,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.proteomics:PSMS' +galaxy.datatypes.registry DEBUG 2024-02-23 13:13:45,143 [pN:main,p:74649,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.proteomics:PepXml' +galaxy.datatypes.registry DEBUG 2024-02-23 13:13:45,143 [pN:main,p:74649,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.proteomics:ProtXML' +galaxy.datatypes.registry DEBUG 2024-02-23 13:13:45,143 [pN:main,p:74649,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.proteomics:SPLib' +galaxy.datatypes.registry DEBUG 2024-02-23 13:13:45,143 [pN:main,p:74649,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.proteomics:TandemXML' +galaxy.datatypes.registry DEBUG 2024-02-23 13:13:45,143 [pN:main,p:74649,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.proteomics:ThermoRAW' +galaxy.datatypes.registry DEBUG 2024-02-23 13:13:45,143 [pN:main,p:74649,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.proteomics:TraML' +galaxy.datatypes.registry DEBUG 2024-02-23 13:13:45,143 [pN:main,p:74649,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.proteomics:TrafoXML' +galaxy.datatypes.registry DEBUG 2024-02-23 13:13:45,143 [pN:main,p:74649,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.proteomics:UniProtXML' +galaxy.datatypes.registry DEBUG 2024-02-23 13:13:45,143 [pN:main,p:74649,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.proteomics:XquestXML' +galaxy.datatypes.registry DEBUG 2024-02-23 13:13:45,144 [pN:main,p:74649,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.proteomics:XquestSpecXML' +galaxy.datatypes.registry DEBUG 2024-02-23 13:13:45,144 [pN:main,p:74649,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.proteomics:QCML' +galaxy.datatypes.registry DEBUG 2024-02-23 13:13:45,144 [pN:main,p:74649,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.proteomics:Wiff' +galaxy.datatypes.registry DEBUG 2024-02-23 13:13:45,144 [pN:main,p:74649,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.proteomics:PEFF' +galaxy.datatypes.registry DEBUG 2024-02-23 13:13:45,144 [pN:main,p:74649,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.molecules:CML' +galaxy.datatypes.registry DEBUG 2024-02-23 13:13:45,144 [pN:main,p:74649,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.xml:GenericXml' +galaxy.datatypes.registry DEBUG 2024-02-23 13:13:45,144 [pN:main,p:74649,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.triples:HDT' +galaxy.datatypes.registry DEBUG 2024-02-23 13:13:45,144 [pN:main,p:74649,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.triples:Turtle' +galaxy.datatypes.registry DEBUG 2024-02-23 13:13:45,144 [pN:main,p:74649,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.triples:NTriples' +galaxy.datatypes.registry DEBUG 2024-02-23 13:13:45,144 [pN:main,p:74649,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.triples:Jsonld' +galaxy.datatypes.registry DEBUG 2024-02-23 13:13:45,144 [pN:main,p:74649,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.sequence:Maf' +galaxy.datatypes.registry DEBUG 2024-02-23 13:13:45,144 [pN:main,p:74649,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.sequence:Lav' +galaxy.datatypes.registry DEBUG 2024-02-23 13:13:45,144 [pN:main,p:74649,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.sequence:MemePsp' +galaxy.datatypes.registry DEBUG 2024-02-23 13:13:45,144 [pN:main,p:74649,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.sequence:Fastg' +galaxy.datatypes.registry DEBUG 2024-02-23 13:13:45,145 [pN:main,p:74649,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.sequence:csFasta' +galaxy.datatypes.registry DEBUG 2024-02-23 13:13:45,145 [pN:main,p:74649,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.qualityscore:QualityScoreSOLiD' +galaxy.datatypes.registry DEBUG 2024-02-23 13:13:45,145 [pN:main,p:74649,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.qualityscore:QualityScore454' +galaxy.datatypes.registry DEBUG 2024-02-23 13:13:45,145 [pN:main,p:74649,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.molecules:SDF' +galaxy.datatypes.registry DEBUG 2024-02-23 13:13:45,145 [pN:main,p:74649,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.molecules:PDB' +galaxy.datatypes.registry DEBUG 2024-02-23 13:13:45,145 [pN:main,p:74649,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.molecules:Cell' +galaxy.datatypes.registry DEBUG 2024-02-23 13:13:45,145 [pN:main,p:74649,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.molecules:CIF' +galaxy.datatypes.registry DEBUG 2024-02-23 13:13:45,145 [pN:main,p:74649,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.molecules:ExtendedXYZ' +galaxy.datatypes.registry DEBUG 2024-02-23 13:13:45,145 [pN:main,p:74649,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.molecules:XYZ' +galaxy.datatypes.registry DEBUG 2024-02-23 13:13:45,145 [pN:main,p:74649,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.molecules:MOL2' +galaxy.datatypes.registry DEBUG 2024-02-23 13:13:45,145 [pN:main,p:74649,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.molecules:InChI' +galaxy.datatypes.registry DEBUG 2024-02-23 13:13:45,145 [pN:main,p:74649,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.molecules:FPS' +galaxy.datatypes.registry DEBUG 2024-02-23 13:13:45,145 [pN:main,p:74649,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.molecules:PQR' +galaxy.datatypes.registry DEBUG 2024-02-23 13:13:45,145 [pN:main,p:74649,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.molecules:GRO' +galaxy.datatypes.registry DEBUG 2024-02-23 13:13:45,146 [pN:main,p:74649,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.phylip:Phylip' +galaxy.datatypes.registry DEBUG 2024-02-23 13:13:45,146 [pN:main,p:74649,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.sequence:Fasta' +galaxy.datatypes.registry DEBUG 2024-02-23 13:13:45,146 [pN:main,p:74649,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.sequence:FastqCSSanger' +galaxy.datatypes.registry DEBUG 2024-02-23 13:13:45,146 [pN:main,p:74649,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.sequence:FastqSanger' +galaxy.datatypes.registry DEBUG 2024-02-23 13:13:45,146 [pN:main,p:74649,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.sequence:Fastq' +galaxy.datatypes.registry DEBUG 2024-02-23 13:13:45,146 [pN:main,p:74649,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.interval:Wiggle' +galaxy.datatypes.registry DEBUG 2024-02-23 13:13:45,146 [pN:main,p:74649,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.text:Html' +galaxy.datatypes.registry DEBUG 2024-02-23 13:13:45,146 [pN:main,p:74649,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.images:Pdf' +galaxy.datatypes.registry DEBUG 2024-02-23 13:13:45,146 [pN:main,p:74649,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.sequence:Axt' +galaxy.datatypes.registry DEBUG 2024-02-23 13:13:45,146 [pN:main,p:74649,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.sequence:Genbank' +galaxy.datatypes.registry DEBUG 2024-02-23 13:13:45,146 [pN:main,p:74649,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.interval:Bed' +galaxy.datatypes.registry DEBUG 2024-02-23 13:13:45,146 [pN:main,p:74649,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.interval:CustomTrack' +galaxy.datatypes.registry DEBUG 2024-02-23 13:13:45,146 [pN:main,p:74649,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.interval:Gtf' +galaxy.datatypes.registry DEBUG 2024-02-23 13:13:45,147 [pN:main,p:74649,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.interval:Gff' +galaxy.datatypes.registry DEBUG 2024-02-23 13:13:45,147 [pN:main,p:74649,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.interval:Gff3' +galaxy.datatypes.registry DEBUG 2024-02-23 13:13:45,147 [pN:main,p:74649,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.tabular:Pileup' +galaxy.datatypes.registry DEBUG 2024-02-23 13:13:45,147 [pN:main,p:74649,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.tabular:Psl' +galaxy.datatypes.registry DEBUG 2024-02-23 13:13:45,147 [pN:main,p:74649,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.text:Paf' +galaxy.datatypes.registry DEBUG 2024-02-23 13:13:45,147 [pN:main,p:74649,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.interval:Interval' +galaxy.datatypes.registry DEBUG 2024-02-23 13:13:45,147 [pN:main,p:74649,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.tabular:Sam' +galaxy.datatypes.registry DEBUG 2024-02-23 13:13:45,147 [pN:main,p:74649,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.data:Newick' +galaxy.datatypes.registry DEBUG 2024-02-23 13:13:45,147 [pN:main,p:74649,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.data:Nexus' +galaxy.datatypes.registry DEBUG 2024-02-23 13:13:45,147 [pN:main,p:74649,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.text:IQTree' +galaxy.datatypes.registry DEBUG 2024-02-23 13:13:45,147 [pN:main,p:74649,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.text:Obo' +galaxy.datatypes.registry DEBUG 2024-02-23 13:13:45,147 [pN:main,p:74649,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.text:Arff' +galaxy.datatypes.registry DEBUG 2024-02-23 13:13:45,147 [pN:main,p:74649,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.text:Ipynb' +galaxy.datatypes.registry DEBUG 2024-02-23 13:13:45,148 [pN:main,p:74649,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.text:Biom1' +galaxy.datatypes.registry DEBUG 2024-02-23 13:13:45,148 [pN:main,p:74649,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.text:ImgtJson' +galaxy.datatypes.registry DEBUG 2024-02-23 13:13:45,148 [pN:main,p:74649,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.text:GeoJson' +galaxy.datatypes.registry DEBUG 2024-02-23 13:13:45,148 [pN:main,p:74649,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.text:PithyaResult' +galaxy.datatypes.registry DEBUG 2024-02-23 13:13:45,148 [pN:main,p:74649,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.text:BCSLts' +galaxy.datatypes.registry DEBUG 2024-02-23 13:13:45,148 [pN:main,p:74649,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.text:Json' +galaxy.datatypes.registry DEBUG 2024-02-23 13:13:45,148 [pN:main,p:74649,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.genetics:GenotypeMatrix' +galaxy.datatypes.registry DEBUG 2024-02-23 13:13:45,148 [pN:main,p:74649,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.genetics:DataIn' +galaxy.datatypes.registry DEBUG 2024-02-23 13:13:45,148 [pN:main,p:74649,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.genetics:MarkerMap' +galaxy.datatypes.registry DEBUG 2024-02-23 13:13:45,148 [pN:main,p:74649,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.genetics:AllegroLOD' +galaxy.datatypes.registry DEBUG 2024-02-23 13:13:45,148 [pN:main,p:74649,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.sequence:RNADotPlotMatrix' +galaxy.datatypes.registry DEBUG 2024-02-23 13:13:45,148 [pN:main,p:74649,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.sequence:DotBracket' +galaxy.datatypes.registry DEBUG 2024-02-23 13:13:45,148 [pN:main,p:74649,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.tabular:CMAP' +galaxy.datatypes.registry DEBUG 2024-02-23 13:13:45,149 [pN:main,p:74649,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.tabular:ConnectivityTable' +galaxy.datatypes.registry DEBUG 2024-02-23 13:13:45,149 [pN:main,p:74649,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.tabular:CSV' +galaxy.datatypes.registry DEBUG 2024-02-23 13:13:45,149 [pN:main,p:74649,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.metacyto:mSummary' +galaxy.datatypes.registry DEBUG 2024-02-23 13:13:45,149 [pN:main,p:74649,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.metacyto:mStats' +galaxy.datatypes.registry DEBUG 2024-02-23 13:13:45,149 [pN:main,p:74649,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.tabular:TSV' +galaxy.datatypes.registry DEBUG 2024-02-23 13:13:45,149 [pN:main,p:74649,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.tabular:MatrixMarket' +galaxy.datatypes.registry DEBUG 2024-02-23 13:13:45,149 [pN:main,p:74649,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.msa:Hmmer2' +galaxy.datatypes.registry DEBUG 2024-02-23 13:13:45,149 [pN:main,p:74649,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.msa:Hmmer3' +galaxy.datatypes.registry DEBUG 2024-02-23 13:13:45,149 [pN:main,p:74649,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.msa:Stockholm_1_0' +galaxy.datatypes.registry DEBUG 2024-02-23 13:13:45,149 [pN:main,p:74649,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.msa:MauveXmfa' +galaxy.datatypes.registry DEBUG 2024-02-23 13:13:45,149 [pN:main,p:74649,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.msa:InfernalCM' +galaxy.datatypes.registry DEBUG 2024-02-23 13:13:45,149 [pN:main,p:74649,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.annotation:SnapHmm' +galaxy.datatypes.registry DEBUG 2024-02-23 13:13:45,150 [pN:main,p:74649,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.microarrays:Cel' +galaxy.datatypes.registry DEBUG 2024-02-23 13:13:45,150 [pN:main,p:74649,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.microarrays:Gpr' +galaxy.datatypes.registry DEBUG 2024-02-23 13:13:45,150 [pN:main,p:74649,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.microarrays:Gal' +galaxy.datatypes.registry DEBUG 2024-02-23 13:13:45,150 [pN:main,p:74649,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.binary:RData' +galaxy.datatypes.registry DEBUG 2024-02-23 13:13:45,150 [pN:main,p:74649,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.binary:RDS' +galaxy.datatypes.registry DEBUG 2024-02-23 13:13:45,150 [pN:main,p:74649,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.images:Mrc2014' +galaxy.datatypes.registry DEBUG 2024-02-23 13:13:45,150 [pN:main,p:74649,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.images:Jpg' +galaxy.datatypes.registry DEBUG 2024-02-23 13:13:45,150 [pN:main,p:74649,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.images:Png' +galaxy.datatypes.registry DEBUG 2024-02-23 13:13:45,150 [pN:main,p:74649,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.images:OMETiff' +galaxy.datatypes.registry DEBUG 2024-02-23 13:13:45,150 [pN:main,p:74649,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.images:Tiff' +galaxy.datatypes.registry DEBUG 2024-02-23 13:13:45,150 [pN:main,p:74649,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.images:Bmp' +galaxy.datatypes.registry DEBUG 2024-02-23 13:13:45,150 [pN:main,p:74649,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.images:Gif' +galaxy.datatypes.registry DEBUG 2024-02-23 13:13:45,151 [pN:main,p:74649,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.images:Im' +galaxy.datatypes.registry DEBUG 2024-02-23 13:13:45,151 [pN:main,p:74649,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.images:Pcd' +galaxy.datatypes.registry DEBUG 2024-02-23 13:13:45,151 [pN:main,p:74649,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.images:Pcx' +galaxy.datatypes.registry DEBUG 2024-02-23 13:13:45,151 [pN:main,p:74649,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.images:Ppm' +galaxy.datatypes.registry DEBUG 2024-02-23 13:13:45,151 [pN:main,p:74649,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.images:Psd' +galaxy.datatypes.registry DEBUG 2024-02-23 13:13:45,151 [pN:main,p:74649,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.images:Xbm' +galaxy.datatypes.registry DEBUG 2024-02-23 13:13:45,151 [pN:main,p:74649,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.images:Rgb' +galaxy.datatypes.registry DEBUG 2024-02-23 13:13:45,151 [pN:main,p:74649,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.images:Pbm' +galaxy.datatypes.registry DEBUG 2024-02-23 13:13:45,151 [pN:main,p:74649,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.images:Pgm' +galaxy.datatypes.registry DEBUG 2024-02-23 13:13:45,151 [pN:main,p:74649,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.images:Xpm' +galaxy.datatypes.registry DEBUG 2024-02-23 13:13:45,151 [pN:main,p:74649,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.images:Eps' +galaxy.datatypes.registry DEBUG 2024-02-23 13:13:45,151 [pN:main,p:74649,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.images:Rast' +galaxy.datatypes.registry DEBUG 2024-02-23 13:13:45,152 [pN:main,p:74649,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.images:Tck' +galaxy.datatypes.registry DEBUG 2024-02-23 13:13:45,152 [pN:main,p:74649,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.images:Trk' +galaxy.datatypes.registry DEBUG 2024-02-23 13:13:45,152 [pN:main,p:74649,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.images:Nifti1' +galaxy.datatypes.registry DEBUG 2024-02-23 13:13:45,152 [pN:main,p:74649,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.images:Nifti2' +galaxy.datatypes.registry DEBUG 2024-02-23 13:13:45,152 [pN:main,p:74649,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.images:Star' +galaxy.datatypes.registry DEBUG 2024-02-23 13:13:45,152 [pN:main,p:74649,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.media:Wav' +galaxy.datatypes.registry DEBUG 2024-02-23 13:13:45,152 [pN:main,p:74649,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.media:Mkv' +galaxy.datatypes.registry DEBUG 2024-02-23 13:13:45,152 [pN:main,p:74649,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.media:Mp3' +galaxy.datatypes.registry DEBUG 2024-02-23 13:13:45,152 [pN:main,p:74649,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.media:Mp4' +galaxy.datatypes.registry DEBUG 2024-02-23 13:13:45,152 [pN:main,p:74649,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.media:Flv' +galaxy.datatypes.registry DEBUG 2024-02-23 13:13:45,152 [pN:main,p:74649,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.media:Mpg' +galaxy.datatypes.registry DEBUG 2024-02-23 13:13:45,152 [pN:main,p:74649,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.speech:TextGrid' +galaxy.datatypes.registry DEBUG 2024-02-23 13:13:45,152 [pN:main,p:74649,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.speech:BPF' +galaxy.datatypes.registry DEBUG 2024-02-23 13:13:45,153 [pN:main,p:74649,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.larch:FEFFInput' +galaxy.datatypes.registry DEBUG 2024-02-23 13:13:45,153 [pN:main,p:74649,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.larch:AthenaProject' +galaxy.datatypes.registry DEBUG 2024-02-23 13:13:45,153 [pN:main,p:74649,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.text:Castep' +galaxy.datatypes.registry DEBUG 2024-02-23 13:13:45,153 [pN:main,p:74649,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.text:CTLresult' +galaxy.datatypes.registry DEBUG 2024-02-23 13:13:45,153 [pN:main,p:74649,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.text:FormattedDensity' +galaxy.datatypes.registry DEBUG 2024-02-23 13:13:45,153 [pN:main,p:74649,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.text:Param' +galaxy.datatypes.registry DEBUG 2024-02-23 13:13:45,153 [pN:main,p:74649,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.text:Yaml' +galaxy.datatypes.registry DEBUG 2024-02-23 13:13:45,153 [pN:main,p:74649,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.binary:OxliCountGraph' +galaxy.datatypes.registry DEBUG 2024-02-23 13:13:45,153 [pN:main,p:74649,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.binary:OxliNodeGraph' +galaxy.datatypes.registry DEBUG 2024-02-23 13:13:45,153 [pN:main,p:74649,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.binary:OxliTagSet' +galaxy.datatypes.registry DEBUG 2024-02-23 13:13:45,153 [pN:main,p:74649,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.binary:OxliStopTags' +galaxy.datatypes.registry DEBUG 2024-02-23 13:13:45,154 [pN:main,p:74649,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.binary:OxliSubset' +galaxy.datatypes.registry DEBUG 2024-02-23 13:13:45,154 [pN:main,p:74649,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.binary:OxliGraphLabels' +galaxy.datatypes.registry DEBUG 2024-02-23 13:13:45,154 [pN:main,p:74649,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.binary:FITS' +galaxy.datatypes.registry DEBUG 2024-02-23 13:13:45,154 [pN:main,p:74649,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.neo4j:Neo4jDBzip' +galaxy.datatypes.registry DEBUG 2024-02-23 13:13:45,154 [pN:main,p:74649,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.text:PithyaProperty' +galaxy.datatypes.registry DEBUG 2024-02-23 13:13:45,154 [pN:main,p:74649,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.text:PithyaModel' +galaxy.datatypes.registry DEBUG 2024-02-23 13:13:45,154 [pN:main,p:74649,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.text:BCSLmodel' +galaxy.datatypes.registry DEBUG 2024-02-23 13:13:45,154 [pN:main,p:74649,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.text:StormSample' +galaxy.datatypes.registry DEBUG 2024-02-23 13:13:45,154 [pN:main,p:74649,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.text:StormCheck' +galaxy.datatypes.registry DEBUG 2024-02-23 13:13:45,159 [pN:main,p:74649,tN:MainThread] Build site file [tool-data/shared/ucsc/ucsc_build_sites.txt] not found using sample [tool-data/shared/ucsc/ucsc_build_sites.txt.sample]. +galaxy.datatypes.registry DEBUG 2024-02-23 13:13:45,159 [pN:main,p:74649,tN:MainThread] Loaded build site 'ucsc': tool-data/shared/ucsc/ucsc_build_sites.txt.sample with display sites: ['main', 'test', 'archaea', 'ucla'] +galaxy.datatypes.registry DEBUG 2024-02-23 13:13:45,159 [pN:main,p:74649,tN:MainThread] Loaded build site 'gbrowse': tool-data/shared/gbrowse/gbrowse_build_sites.txt with display sites: ['modencode', 'sgd_yeast', 'tair', 'wormbase', 'wormbase_ws120', 'wormbase_ws140', 'wormbase_ws170', 'wormbase_ws180', 'wormbase_ws190', 'wormbase_ws200', 'wormbase_ws204', 'wormbase_ws210', 'wormbase_ws220', 'wormbase_ws225'] +galaxy.datatypes.registry DEBUG 2024-02-23 13:13:45,159 [pN:main,p:74649,tN:MainThread] Loaded build site 'ensembl': tool-data/shared/ensembl/ensembl_sites.txt +galaxy.datatypes.registry DEBUG 2024-02-23 13:13:45,159 [pN:main,p:74649,tN:MainThread] Loaded build site 'ensembl_data_url': tool-data/shared/ensembl/ensembl_sites_data_URL.txt +galaxy.datatypes.registry DEBUG 2024-02-23 13:13:45,159 [pN:main,p:74649,tN:MainThread] Build site file [tool-data/shared/igv/igv_build_sites.txt] not found using sample [tool-data/shared/igv/igv_build_sites.txt.sample]. +galaxy.datatypes.registry DEBUG 2024-02-23 13:13:45,159 [pN:main,p:74649,tN:MainThread] Loaded build site 'igv': tool-data/shared/igv/igv_build_sites.txt.sample +galaxy.datatypes.registry DEBUG 2024-02-23 13:13:45,159 [pN:main,p:74649,tN:MainThread] Build site file [tool-data/shared/rviewer/rviewer_build_sites.txt] not found using sample [tool-data/shared/rviewer/rviewer_build_sites.txt.sample]. +galaxy.datatypes.registry DEBUG 2024-02-23 13:13:45,159 [pN:main,p:74649,tN:MainThread] Loaded build site 'rviewer': tool-data/shared/rviewer/rviewer_build_sites.txt.sample +galaxy.util.tool_shed.tool_shed_registry DEBUG 2024-02-23 13:13:45,160 [pN:main,p:74649,tN:MainThread] Loading references to tool sheds from /tmp/tmpj6ure7bs/tool_sheds_conf.xml +galaxy.util.tool_shed.tool_shed_registry DEBUG 2024-02-23 13:13:45,160 [pN:main,p:74649,tN:MainThread] Loaded reference to tool shed: Target Shed +galaxy.queue_worker INFO 2024-02-23 13:13:45,161 [pN:main,p:74649,tN:MainThread] Initializing main Galaxy Queue Worker on sqlalchemy+sqlite:////tmp/tmpj6ure7bs/galaxy.sqlite?isolation_level=IMMEDIATE +galaxy.tool_util.data WARNING 2024-02-23 13:13:45,173 [pN:main,p:74649,tN:MainThread] Cannot find index file '/scratch/rico/galaxytools/tools/ncbi_fcs_adaptor/test-data/ncbi_fcs_adaptor_config.tsv' for tool data table 'ncbi_fcs_adaptor_config' +galaxy.tool_util.data DEBUG 2024-02-23 13:13:45,173 [pN:main,p:74649,tN:MainThread] Loaded tool data table 'ncbi_fcs_adaptor_config' from file '/scratch/rico/galaxytools/tools/ncbi_fcs_adaptor/tool_data_table_conf.xml.test' +galaxy.tool_util.data WARNING 2024-02-23 13:13:45,173 [pN:main,p:74649,tN:MainThread] Cannot find index file '/scratch/rico/galaxytools/tools/ncbi_fcs_adaptor/test-data/ncbi_fcs_adaptor_databases.loc' for tool data table 'ncbi_fcs_adaptor_databases' +galaxy.tool_util.data DEBUG 2024-02-23 13:13:45,173 [pN:main,p:74649,tN:MainThread] Loaded tool data table 'ncbi_fcs_adaptor_databases' from file '/scratch/rico/galaxytools/tools/ncbi_fcs_adaptor/tool_data_table_conf.xml.test' +galaxy.tool_util.data WARNING 2024-02-23 13:13:45,173 [pN:main,p:74649,tN:MainThread] Cannot find index file '/scratch/rico/galaxytools/tools/ncbi_fcs_adaptor/test-data/ncbi_fcs_adaptor_divisions.tsv' for tool data table 'ncbi_fcs_adaptor_divisions' +galaxy.tool_util.data DEBUG 2024-02-23 13:13:45,173 [pN:main,p:74649,tN:MainThread] Loaded tool data table 'ncbi_fcs_adaptor_divisions' from file '/scratch/rico/galaxytools/tools/ncbi_fcs_adaptor/tool_data_table_conf.xml.test' +galaxy.visualization.genomes ERROR 2024-02-23 13:13:45,178 [pN:main,p:74649,tN:MainThread] Error reading twobit.loc +Traceback (most recent call last): + File "/scratch/rico/galaxy/lib/galaxy/visualization/genomes.py", line 220, in reload_genomes + with open(twobit_path) as f: +FileNotFoundError: [Errno 2] No such file or directory: '/scratch/rico/galaxy/tool-data/twobit.loc' +galaxy.util WARNING 2024-02-23 13:13:45,495 [pN:main,p:74649,tN:MainThread] directory not found: /scratch/rico/galaxy/lib/galaxy/util/../../../config/plugins/activities +galaxy.tools WARNING 2024-02-23 13:13:45,496 [pN:main,p:74649,tN:MainThread] The default shed tool config file (/tmp/tmpj6ure7bs/shed_tool_conf.xml) has been added to the tool_config_file option, if this is not the desired behavior, please set shed_tool_config_file to your primary shed-enabled tool config file +galaxy.tool_util.toolbox.base INFO 2024-02-23 13:13:45,496 [pN:main,p:74649,tN:MainThread] Parsing the tool configuration /tmp/tmpj6ure7bs/tool_conf.xml +galaxy.tool_util.toolbox.base DEBUG 2024-02-23 13:13:45,496 [pN:main,p:74649,tN:MainThread] Tool path for tool configuration /tmp/tmpj6ure7bs/tool_conf.xml is None +galaxy.tool_util.toolbox.base DEBUG 2024-02-23 13:13:45,506 [pN:main,p:74649,tN:MainThread] Loaded tool id: upload1, version: 1.1.7 into tool panel.. +galaxy.tool_util.toolbox.base DEBUG 2024-02-23 13:13:45,509 [pN:main,p:74649,tN:MainThread] Loaded tool id: ncbi_fcs_adaptor, version: 0.5.0+galaxy0 into tool panel.. +galaxy.tools WARNING 2024-02-23 13:13:45,509 [pN:main,p:74649,tN:MainThread] The default shed tool config file (/tmp/tmpj6ure7bs/shed_tool_conf.xml) has been added to the tool_config_file option, if this is not the desired behavior, please set shed_tool_config_file to your primary shed-enabled tool config file +galaxy.tool_util.toolbox.base INFO 2024-02-23 13:13:45,509 [pN:main,p:74649,tN:MainThread] Parsing the tool configuration /tmp/tmpj6ure7bs/shed_tools_conf.xml +galaxy.tool_util.toolbox.base DEBUG 2024-02-23 13:13:45,510 [pN:main,p:74649,tN:MainThread] Tool path for shed tool configuration /tmp/tmpj6ure7bs/shed_tools_conf.xml is /tmp/tmpj6ure7bs/shed_tools +galaxy.tools WARNING 2024-02-23 13:13:45,510 [pN:main,p:74649,tN:MainThread] The default shed tool config file (/tmp/tmpj6ure7bs/shed_tool_conf.xml) has been added to the tool_config_file option, if this is not the desired behavior, please set shed_tool_config_file to your primary shed-enabled tool config file +galaxy.tool_util.toolbox.base INFO 2024-02-23 13:13:45,510 [pN:main,p:74649,tN:MainThread] Parsing the tool configuration /tmp/tmpj6ure7bs/empty_tool_conf.xml +galaxy.tool_util.toolbox.base DEBUG 2024-02-23 13:13:45,510 [pN:main,p:74649,tN:MainThread] Tool path for tool configuration /tmp/tmpj6ure7bs/empty_tool_conf.xml is None +galaxy.tool_util.toolbox.base DEBUG 2024-02-23 13:13:45,510 [pN:main,p:74649,tN:MainThread] Reading tools from config files finished (14.795 ms) +galaxy.tool_util.toolbox.base DEBUG 2024-02-23 13:13:45,512 [pN:main,p:74649,tN:MainThread] Loaded tool id: upload1, version: 1.1.7 into tool panel.. +galaxy.tool_util.toolbox.views.edam DEBUG 2024-02-23 13:13:45,512 [pN:main,p:74649,tN:MainThread] Loading EDAM tool panel finished (1.500 ms) +galaxy.tool_util.toolbox.base DEBUG 2024-02-23 13:13:45,513 [pN:main,p:74649,tN:MainThread] Loaded tool id: upload1, version: 1.1.7 into tool panel.. +galaxy.tool_util.toolbox.views.edam DEBUG 2024-02-23 13:13:45,513 [pN:main,p:74649,tN:MainThread] Loading EDAM tool panel finished (1.310 ms) +galaxy.tool_util.toolbox.integrated_panel DEBUG 2024-02-23 13:13:45,514 [pN:main,p:74649,tN:MainThread] Writing integrated tool panel config file to '/tmp/tmpj6ure7bs/integrated_tool_panel_conf.xml' +galaxy.util ERROR 2024-02-23 13:13:45,966 [pN:main,p:74649,tN:MainThread] Error parsing file /tmp/tmpj6ure7bs +Traceback (most recent call last): + File "/scratch/rico/galaxy/lib/galaxy/util/__init__.py", line 305, in parse_xml + tree = etree.parse(str(fname), parser=parser) + File "src/lxml/etree.pyx", line 3541, in lxml.etree.parse + File "src/lxml/parser.pxi", line 1879, in lxml.etree._parseDocument + File "src/lxml/parser.pxi", line 1905, in lxml.etree._parseDocumentFromURL + File "src/lxml/parser.pxi", line 1808, in lxml.etree._parseDocFromFile + File "src/lxml/parser.pxi", line 1180, in lxml.etree._BaseParser._parseDocFromFile + File "src/lxml/parser.pxi", line 618, in lxml.etree._ParserContext._handleParseResultDoc + File "src/lxml/parser.pxi", line 728, in lxml.etree._handleParseResult + File "src/lxml/parser.pxi", line 657, in lxml.etree._raiseParseError + File "/tmp/tmpj6ure7bs", line 1 +lxml.etree.XMLSyntaxError: Document is empty, line 1, column 1 +galaxy.tools.data_manager.manager ERROR 2024-02-23 13:13:45,967 [pN:main,p:74649,tN:MainThread] There was an error parsing your Data Manager config file "/tmp/tmpj6ure7bs": Document is empty, line 1, column 1 (tmpj6ure7bs, line 1) +galaxy.datatypes.registry DEBUG 2024-02-23 13:13:45,969 [pN:main,p:74649,tN:MainThread] Loaded display application 'ucsc_bam' for datatype 'bam', inherit=False. +galaxy.datatypes.registry DEBUG 2024-02-23 13:13:45,970 [pN:main,p:74649,tN:MainThread] Loaded display application 'ensembl_bam' for datatype 'bam', inherit=False. +galaxy.datatypes.display_applications.application ERROR 2024-02-23 13:13:45,971 [pN:main,p:74649,tN:MainThread] Error loading a set of Dynamic Display Application links: Unable to find data table named "igv_broad_genomes". +galaxy.datatypes.registry DEBUG 2024-02-23 13:13:45,973 [pN:main,p:74649,tN:MainThread] Loaded display application 'igv_bam' for datatype 'bam', inherit=False. +galaxy.datatypes.registry DEBUG 2024-02-23 13:13:45,973 [pN:main,p:74649,tN:MainThread] Loaded display application 'igb_bam' for datatype 'bam', inherit=False. +galaxy.datatypes.display_applications.application ERROR 2024-02-23 13:13:45,974 [pN:main,p:74649,tN:MainThread] Error loading a set of Dynamic Display Application links: Unable to find data table named "bam_iobio". +galaxy.datatypes.registry DEBUG 2024-02-23 13:13:45,974 [pN:main,p:74649,tN:MainThread] Loaded display application 'iobio_bam' for datatype 'bam', inherit=False. +galaxy.datatypes.registry DEBUG 2024-02-23 13:13:45,974 [pN:main,p:74649,tN:MainThread] Loaded display application 'igb_bed' for datatype 'bed', inherit=False. +galaxy.datatypes.registry DEBUG 2024-02-23 13:13:45,974 [pN:main,p:74649,tN:MainThread] Loaded display application 'igb_bedgraph' for datatype 'bedgraph', inherit=False. +galaxy.datatypes.registry DEBUG 2024-02-23 13:13:45,975 [pN:main,p:74649,tN:MainThread] Loaded display application 'ucsc_bigbed' for datatype 'bigbed', inherit=False. +galaxy.datatypes.registry DEBUG 2024-02-23 13:13:45,975 [pN:main,p:74649,tN:MainThread] Loaded display application 'igb_bb' for datatype 'bigbed', inherit=False. +galaxy.datatypes.registry DEBUG 2024-02-23 13:13:45,976 [pN:main,p:74649,tN:MainThread] Loaded display application 'ucsc_bigwig' for datatype 'bigwig', inherit=False. +galaxy.datatypes.registry DEBUG 2024-02-23 13:13:45,976 [pN:main,p:74649,tN:MainThread] Loaded display application 'igb_bigwig' for datatype 'bigwig', inherit=False. +galaxy.datatypes.registry DEBUG 2024-02-23 13:13:45,977 [pN:main,p:74649,tN:MainThread] Loaded display application 'igv_bigwig' for datatype 'bigwig', inherit=False. +galaxy.datatypes.display_applications.application ERROR 2024-02-23 13:13:45,977 [pN:main,p:74649,tN:MainThread] Error loading a set of Dynamic Display Application links: Unable to find data table named "intermine_simple_display". +galaxy.datatypes.registry DEBUG 2024-02-23 13:13:45,977 [pN:main,p:74649,tN:MainThread] Loaded display application 'intermine_simple' for datatype 'intermine_tabular', inherit=False. +galaxy.datatypes.display_applications.application ERROR 2024-02-23 13:13:45,978 [pN:main,p:74649,tN:MainThread] Error loading a set of Dynamic Display Application links: Unable to find data table named "igv_broad_genomes". +galaxy.datatypes.registry DEBUG 2024-02-23 13:13:45,978 [pN:main,p:74649,tN:MainThread] Loaded display application 'igv_fasta' for datatype 'fasta', inherit=True. +galaxy.datatypes.registry DEBUG 2024-02-23 13:13:45,979 [pN:main,p:74649,tN:MainThread] Loaded display application 'ensembl_gff' for datatype 'gff', inherit=True. +galaxy.datatypes.display_applications.application ERROR 2024-02-23 13:13:45,980 [pN:main,p:74649,tN:MainThread] Error loading a set of Dynamic Display Application links: Unable to find data table named "igv_broad_genomes". +galaxy.datatypes.registry DEBUG 2024-02-23 13:13:45,980 [pN:main,p:74649,tN:MainThread] Loaded display application 'igv_gff' for datatype 'gff', inherit=True. +galaxy.datatypes.registry DEBUG 2024-02-23 13:13:45,980 [pN:main,p:74649,tN:MainThread] Loaded display application 'igb_gtf' for datatype 'gtf', inherit=False. +galaxy.datatypes.registry DEBUG 2024-02-23 13:13:45,981 [pN:main,p:74649,tN:MainThread] Loaded display application 'ensembl_interval' for datatype 'interval', inherit=True. +galaxy.datatypes.registry DEBUG 2024-02-23 13:13:45,982 [pN:main,p:74649,tN:MainThread] Loaded display application 'gbrowse_interval_as_bed' for datatype 'interval', inherit=True. +galaxy.datatypes.registry DEBUG 2024-02-23 13:13:45,983 [pN:main,p:74649,tN:MainThread] Loaded display application 'rviewer_interval' for datatype 'interval', inherit=True. +galaxy.datatypes.display_applications.application ERROR 2024-02-23 13:13:45,984 [pN:main,p:74649,tN:MainThread] Error loading a set of Dynamic Display Application links: Unable to find data table named "igv_broad_genomes". +galaxy.datatypes.registry DEBUG 2024-02-23 13:13:45,984 [pN:main,p:74649,tN:MainThread] Loaded display application 'igv_interval_as_bed' for datatype 'interval', inherit=True. +galaxy.datatypes.registry DEBUG 2024-02-23 13:13:45,984 [pN:main,p:74649,tN:MainThread] Loaded display application 'avivator' for datatype 'ome.tiff', inherit=False. +galaxy.datatypes.display_applications.application ERROR 2024-02-23 13:13:45,984 [pN:main,p:74649,tN:MainThread] Error loading a set of Dynamic Display Application links: Unable to find data table named "q2view_display". +galaxy.datatypes.registry DEBUG 2024-02-23 13:13:45,984 [pN:main,p:74649,tN:MainThread] Loaded display application 'q2view' for datatype 'qza', inherit=False. +galaxy.datatypes.display_applications.application ERROR 2024-02-23 13:13:45,984 [pN:main,p:74649,tN:MainThread] Error loading a set of Dynamic Display Application links: Unable to find data table named "q2view_display". +galaxy.datatypes.registry DEBUG 2024-02-23 13:13:45,985 [pN:main,p:74649,tN:MainThread] Loaded display application 'q2view' for datatype 'qzv', inherit=False. +galaxy.datatypes.registry DEBUG 2024-02-23 13:13:45,985 [pN:main,p:74649,tN:MainThread] Loaded display application 'ucsc_maf_customtrack' for datatype 'mafcustomtrack', inherit=False. +galaxy.datatypes.registry DEBUG 2024-02-23 13:13:45,985 [pN:main,p:74649,tN:MainThread] Loaded display application 'minerva_tabular' for datatype 'tabular', inherit=False. +galaxy.datatypes.registry DEBUG 2024-02-23 13:13:45,986 [pN:main,p:74649,tN:MainThread] Loaded display application 'ucsc_vcf' for datatype 'vcf', inherit=False. +galaxy.datatypes.display_applications.application ERROR 2024-02-23 13:13:45,987 [pN:main,p:74649,tN:MainThread] Error loading a set of Dynamic Display Application links: Unable to find data table named "igv_broad_genomes". +galaxy.datatypes.registry DEBUG 2024-02-23 13:13:45,987 [pN:main,p:74649,tN:MainThread] Loaded display application 'igv_vcf' for datatype 'vcf', inherit=False. +galaxy.datatypes.registry DEBUG 2024-02-23 13:13:45,987 [pN:main,p:74649,tN:MainThread] Loaded display application 'rviewer_vcf' for datatype 'vcf', inherit=True. +galaxy.datatypes.display_applications.application ERROR 2024-02-23 13:13:45,987 [pN:main,p:74649,tN:MainThread] Error loading a set of Dynamic Display Application links: Unable to find data table named "vcf_iobio". +galaxy.datatypes.registry DEBUG 2024-02-23 13:13:45,988 [pN:main,p:74649,tN:MainThread] Loaded display application 'iobio_vcf' for datatype 'vcf', inherit=False. +galaxy.datatypes.registry DEBUG 2024-02-23 13:13:45,988 [pN:main,p:74649,tN:MainThread] Loaded display application 'igb_wig' for datatype 'wig', inherit=False. +galaxy.datatypes.display_applications.application ERROR 2024-02-23 13:13:45,988 [pN:main,p:74649,tN:MainThread] Error loading a set of Dynamic Display Application links: Unable to find data table named "igv_broad_genomes". +galaxy.datatypes.registry DEBUG 2024-02-23 13:13:45,989 [pN:main,p:74649,tN:MainThread] Loaded display application 'igv_vcf' for datatype 'vcf_bgzip', inherit=False. +galaxy.datatypes.display_applications.application ERROR 2024-02-23 13:13:45,989 [pN:main,p:74649,tN:MainThread] Error loading a set of Dynamic Display Application links: Unable to find data table named "igv_broad_genomes". +galaxy.datatypes.registry DEBUG 2024-02-23 13:13:45,989 [pN:main,p:74649,tN:MainThread] Loaded display application 'igv_genbank' for datatype 'genbank', inherit=False. +galaxy.datatypes.display_applications.application ERROR 2024-02-23 13:13:45,989 [pN:main,p:74649,tN:MainThread] Error loading a set of Dynamic Display Application links: Unable to find data table named "biom_simple_display". +galaxy.datatypes.registry DEBUG 2024-02-23 13:13:45,990 [pN:main,p:74649,tN:MainThread] Loaded display application 'biom_simple' for datatype 'biom1', inherit=False. +galaxy.datatypes.display_applications.application ERROR 2024-02-23 13:13:45,990 [pN:main,p:74649,tN:MainThread] Error loading a set of Dynamic Display Application links: Unable to find data table named "icn3d_simple_display". +galaxy.datatypes.registry DEBUG 2024-02-23 13:13:45,990 [pN:main,p:74649,tN:MainThread] Loaded display application 'icn3d_simple' for datatype 'sdf', inherit=False. +galaxy.datatypes.display_applications.application ERROR 2024-02-23 13:13:45,990 [pN:main,p:74649,tN:MainThread] Error loading a set of Dynamic Display Application links: Unable to find data table named "icn3d_simple_display". +galaxy.datatypes.registry DEBUG 2024-02-23 13:13:45,990 [pN:main,p:74649,tN:MainThread] Loaded display application 'icn3d_simple' for datatype 'mol2', inherit=False. +galaxy.datatypes.display_applications.application ERROR 2024-02-23 13:13:45,990 [pN:main,p:74649,tN:MainThread] Error loading a set of Dynamic Display Application links: Unable to find data table named "icn3d_simple_display". +galaxy.datatypes.registry DEBUG 2024-02-23 13:13:45,990 [pN:main,p:74649,tN:MainThread] Loaded display application 'icn3d_simple' for datatype 'pdb', inherit=False. +galaxy.datatypes.registry DEBUG 2024-02-23 13:13:45,990 [pN:main,p:74649,tN:MainThread] Loaded display application 'ucsc_trackhub' for datatype 'trackhub', inherit=False. +galaxy.datatypes.registry DEBUG 2024-02-23 13:13:45,991 [pN:main,p:74649,tN:MainThread] Adding inherited display application 'ensembl_interval' to datatype 'bed' +galaxy.datatypes.registry DEBUG 2024-02-23 13:13:45,991 [pN:main,p:74649,tN:MainThread] Adding inherited display application 'gbrowse_interval_as_bed' to datatype 'bed' +galaxy.datatypes.registry DEBUG 2024-02-23 13:13:45,991 [pN:main,p:74649,tN:MainThread] Adding inherited display application 'rviewer_interval' to datatype 'bed' +galaxy.datatypes.registry DEBUG 2024-02-23 13:13:45,991 [pN:main,p:74649,tN:MainThread] Adding inherited display application 'igv_interval_as_bed' to datatype 'bed' +galaxy.datatypes.registry DEBUG 2024-02-23 13:13:45,991 [pN:main,p:74649,tN:MainThread] Adding inherited display application 'ensembl_interval' to datatype 'bedgraph' +galaxy.datatypes.registry DEBUG 2024-02-23 13:13:45,991 [pN:main,p:74649,tN:MainThread] Adding inherited display application 'gbrowse_interval_as_bed' to datatype 'bedgraph' +galaxy.datatypes.registry DEBUG 2024-02-23 13:13:45,991 [pN:main,p:74649,tN:MainThread] Adding inherited display application 'rviewer_interval' to datatype 'bedgraph' +galaxy.datatypes.registry DEBUG 2024-02-23 13:13:45,991 [pN:main,p:74649,tN:MainThread] Adding inherited display application 'igv_interval_as_bed' to datatype 'bedgraph' +galaxy.datatypes.registry DEBUG 2024-02-23 13:13:45,991 [pN:main,p:74649,tN:MainThread] Adding inherited display application 'ensembl_interval' to datatype 'bedstrict' +galaxy.datatypes.registry DEBUG 2024-02-23 13:13:45,991 [pN:main,p:74649,tN:MainThread] Adding inherited display application 'gbrowse_interval_as_bed' to datatype 'bedstrict' +galaxy.datatypes.registry DEBUG 2024-02-23 13:13:45,991 [pN:main,p:74649,tN:MainThread] Adding inherited display application 'rviewer_interval' to datatype 'bedstrict' +galaxy.datatypes.registry DEBUG 2024-02-23 13:13:45,991 [pN:main,p:74649,tN:MainThread] Adding inherited display application 'igv_interval_as_bed' to datatype 'bedstrict' +galaxy.datatypes.registry DEBUG 2024-02-23 13:13:45,991 [pN:main,p:74649,tN:MainThread] Adding inherited display application 'ensembl_interval' to datatype 'bed6' +galaxy.datatypes.registry DEBUG 2024-02-23 13:13:45,991 [pN:main,p:74649,tN:MainThread] Adding inherited display application 'gbrowse_interval_as_bed' to datatype 'bed6' +galaxy.datatypes.registry DEBUG 2024-02-23 13:13:45,991 [pN:main,p:74649,tN:MainThread] Adding inherited display application 'rviewer_interval' to datatype 'bed6' +galaxy.datatypes.registry DEBUG 2024-02-23 13:13:45,991 [pN:main,p:74649,tN:MainThread] Adding inherited display application 'igv_interval_as_bed' to datatype 'bed6' +galaxy.datatypes.registry DEBUG 2024-02-23 13:13:45,991 [pN:main,p:74649,tN:MainThread] Adding inherited display application 'ensembl_interval' to datatype 'bed12' +galaxy.datatypes.registry DEBUG 2024-02-23 13:13:45,991 [pN:main,p:74649,tN:MainThread] Adding inherited display application 'gbrowse_interval_as_bed' to datatype 'bed12' +galaxy.datatypes.registry DEBUG 2024-02-23 13:13:45,992 [pN:main,p:74649,tN:MainThread] Adding inherited display application 'rviewer_interval' to datatype 'bed12' +galaxy.datatypes.registry DEBUG 2024-02-23 13:13:45,992 [pN:main,p:74649,tN:MainThread] Adding inherited display application 'igv_interval_as_bed' to datatype 'bed12' +galaxy.datatypes.registry DEBUG 2024-02-23 13:13:45,992 [pN:main,p:74649,tN:MainThread] Adding inherited display application 'ensembl_interval' to datatype 'probed' +galaxy.datatypes.registry DEBUG 2024-02-23 13:13:45,992 [pN:main,p:74649,tN:MainThread] Adding inherited display application 'gbrowse_interval_as_bed' to datatype 'probed' +galaxy.datatypes.registry DEBUG 2024-02-23 13:13:45,992 [pN:main,p:74649,tN:MainThread] Adding inherited display application 'rviewer_interval' to datatype 'probed' +galaxy.datatypes.registry DEBUG 2024-02-23 13:13:45,992 [pN:main,p:74649,tN:MainThread] Adding inherited display application 'igv_interval_as_bed' to datatype 'probed' +galaxy.datatypes.registry DEBUG 2024-02-23 13:13:45,992 [pN:main,p:74649,tN:MainThread] Adding inherited display application 'ensembl_interval' to datatype 'chrint' +galaxy.datatypes.registry DEBUG 2024-02-23 13:13:45,992 [pN:main,p:74649,tN:MainThread] Adding inherited display application 'gbrowse_interval_as_bed' to datatype 'chrint' +galaxy.datatypes.registry DEBUG 2024-02-23 13:13:45,992 [pN:main,p:74649,tN:MainThread] Adding inherited display application 'rviewer_interval' to datatype 'chrint' +galaxy.datatypes.registry DEBUG 2024-02-23 13:13:45,992 [pN:main,p:74649,tN:MainThread] Adding inherited display application 'igv_interval_as_bed' to datatype 'chrint' +galaxy.datatypes.registry DEBUG 2024-02-23 13:13:45,992 [pN:main,p:74649,tN:MainThread] Adding inherited display application 'igv_fasta' to datatype 'fasta.gz' +galaxy.datatypes.registry DEBUG 2024-02-23 13:13:45,992 [pN:main,p:74649,tN:MainThread] Adding inherited display application 'ensembl_gff' to datatype 'gff3' +galaxy.datatypes.registry DEBUG 2024-02-23 13:13:45,992 [pN:main,p:74649,tN:MainThread] Adding inherited display application 'igv_gff' to datatype 'gff3' +galaxy.datatypes.registry DEBUG 2024-02-23 13:13:45,992 [pN:main,p:74649,tN:MainThread] Adding inherited display application 'ensembl_gff' to datatype 'gff3.gz' +galaxy.datatypes.registry DEBUG 2024-02-23 13:13:45,992 [pN:main,p:74649,tN:MainThread] Adding inherited display application 'igv_gff' to datatype 'gff3.gz' +galaxy.datatypes.registry DEBUG 2024-02-23 13:13:45,992 [pN:main,p:74649,tN:MainThread] Adding inherited display application 'ensembl_gff' to datatype 'gff3.bz2' +galaxy.datatypes.registry DEBUG 2024-02-23 13:13:45,993 [pN:main,p:74649,tN:MainThread] Adding inherited display application 'igv_gff' to datatype 'gff3.bz2' +galaxy.datatypes.registry DEBUG 2024-02-23 13:13:45,993 [pN:main,p:74649,tN:MainThread] Adding inherited display application 'ensembl_gff' to datatype 'gtf' +galaxy.datatypes.registry DEBUG 2024-02-23 13:13:45,993 [pN:main,p:74649,tN:MainThread] Adding inherited display application 'igv_gff' to datatype 'gtf' +galaxy.datatypes.registry DEBUG 2024-02-23 13:13:45,994 [pN:main,p:74649,tN:MainThread] Adding inherited display application 'ensembl_interval' to datatype 'encodepeak' +galaxy.datatypes.registry DEBUG 2024-02-23 13:13:45,994 [pN:main,p:74649,tN:MainThread] Adding inherited display application 'gbrowse_interval_as_bed' to datatype 'encodepeak' +galaxy.datatypes.registry DEBUG 2024-02-23 13:13:45,994 [pN:main,p:74649,tN:MainThread] Adding inherited display application 'rviewer_interval' to datatype 'encodepeak' +galaxy.datatypes.registry DEBUG 2024-02-23 13:13:45,994 [pN:main,p:74649,tN:MainThread] Adding inherited display application 'igv_interval_as_bed' to datatype 'encodepeak' +galaxy.datatypes.registry DEBUG 2024-02-23 13:13:45,994 [pN:main,p:74649,tN:MainThread] Adding inherited display application 'igv_fasta' to datatype 'sequences' +galaxy.datatypes.registry DEBUG 2024-02-23 13:13:45,994 [pN:main,p:74649,tN:MainThread] Adding inherited display application 'ensembl_interval' to datatype 'interval_tabix.gz' +galaxy.datatypes.registry DEBUG 2024-02-23 13:13:45,994 [pN:main,p:74649,tN:MainThread] Adding inherited display application 'gbrowse_interval_as_bed' to datatype 'interval_tabix.gz' +galaxy.datatypes.registry DEBUG 2024-02-23 13:13:45,994 [pN:main,p:74649,tN:MainThread] Adding inherited display application 'rviewer_interval' to datatype 'interval_tabix.gz' +galaxy.datatypes.registry DEBUG 2024-02-23 13:13:45,994 [pN:main,p:74649,tN:MainThread] Adding inherited display application 'igv_interval_as_bed' to datatype 'interval_tabix.gz' +galaxy.datatypes.registry DEBUG 2024-02-23 13:13:45,994 [pN:main,p:74649,tN:MainThread] Adding inherited display application 'ensembl_interval' to datatype 'juicer_medium_tabix.gz' +galaxy.datatypes.registry DEBUG 2024-02-23 13:13:45,994 [pN:main,p:74649,tN:MainThread] Adding inherited display application 'gbrowse_interval_as_bed' to datatype 'juicer_medium_tabix.gz' +galaxy.datatypes.registry DEBUG 2024-02-23 13:13:45,994 [pN:main,p:74649,tN:MainThread] Adding inherited display application 'rviewer_interval' to datatype 'juicer_medium_tabix.gz' +galaxy.datatypes.registry DEBUG 2024-02-23 13:13:45,995 [pN:main,p:74649,tN:MainThread] Adding inherited display application 'igv_interval_as_bed' to datatype 'juicer_medium_tabix.gz' +galaxy.datatypes.registry DEBUG 2024-02-23 13:13:45,995 [pN:main,p:74649,tN:MainThread] Adding inherited display application 'ensembl_interval' to datatype 'bed_tabix.gz' +galaxy.datatypes.registry DEBUG 2024-02-23 13:13:45,995 [pN:main,p:74649,tN:MainThread] Adding inherited display application 'gbrowse_interval_as_bed' to datatype 'bed_tabix.gz' +galaxy.datatypes.registry DEBUG 2024-02-23 13:13:45,995 [pN:main,p:74649,tN:MainThread] Adding inherited display application 'rviewer_interval' to datatype 'bed_tabix.gz' +galaxy.datatypes.registry DEBUG 2024-02-23 13:13:45,995 [pN:main,p:74649,tN:MainThread] Adding inherited display application 'igv_interval_as_bed' to datatype 'bed_tabix.gz' +galaxy.datatypes.registry DEBUG 2024-02-23 13:13:45,995 [pN:main,p:74649,tN:MainThread] Adding inherited display application 'ensembl_interval' to datatype 'gff_tabix.gz' +galaxy.datatypes.registry DEBUG 2024-02-23 13:13:45,995 [pN:main,p:74649,tN:MainThread] Adding inherited display application 'gbrowse_interval_as_bed' to datatype 'gff_tabix.gz' +galaxy.datatypes.registry DEBUG 2024-02-23 13:13:45,995 [pN:main,p:74649,tN:MainThread] Adding inherited display application 'rviewer_interval' to datatype 'gff_tabix.gz' +galaxy.datatypes.registry DEBUG 2024-02-23 13:13:45,995 [pN:main,p:74649,tN:MainThread] Adding inherited display application 'igv_interval_as_bed' to datatype 'gff_tabix.gz' +galaxy.datatypes.registry DEBUG 2024-02-23 13:13:45,996 [pN:main,p:74649,tN:MainThread] Adding inherited display application 'igv_fasta' to datatype 'mothur.align' +galaxy.datatypes.registry DEBUG 2024-02-23 13:13:45,999 [pN:main,p:74649,tN:MainThread] Loaded converter: CONVERTER_uncompressed_to_gz +galaxy.datatypes.registry DEBUG 2024-02-23 13:13:46,000 [pN:main,p:74649,tN:MainThread] Loaded converter: CONVERTER_gz_to_uncompressed +galaxy.datatypes.registry DEBUG 2024-02-23 13:13:46,002 [pN:main,p:74649,tN:MainThread] Loaded converter: CONVERTER_uncompressed_to_gz +galaxy.datatypes.registry DEBUG 2024-02-23 13:13:46,003 [pN:main,p:74649,tN:MainThread] Loaded converter: CONVERTER_gz_to_uncompressed +galaxy.datatypes.registry DEBUG 2024-02-23 13:13:46,005 [pN:main,p:74649,tN:MainThread] Loaded converter: CONVERTER_uncompressed_to_gz +galaxy.datatypes.registry DEBUG 2024-02-23 13:13:46,006 [pN:main,p:74649,tN:MainThread] Loaded converter: CONVERTER_gz_to_uncompressed +galaxy.datatypes.registry DEBUG 2024-02-23 13:13:46,007 [pN:main,p:74649,tN:MainThread] Loaded converter: CONVERTER_Bam_Bai_0 +galaxy.datatypes.registry DEBUG 2024-02-23 13:13:46,008 [pN:main,p:74649,tN:MainThread] Loaded converter: CONVERTER_bam_to_bigwig_0 +galaxy.datatypes.registry DEBUG 2024-02-23 13:13:46,010 [pN:main,p:74649,tN:MainThread] Loaded converter: CONVERTER_bam_to_qname_sorted_bam +galaxy.datatypes.registry DEBUG 2024-02-23 13:13:46,011 [pN:main,p:74649,tN:MainThread] Loaded converter: CONVERTER_bam_to_bigwig_0 +galaxy.datatypes.registry DEBUG 2024-02-23 13:13:46,012 [pN:main,p:74649,tN:MainThread] Loaded converter: CONVERTER_bam_to_coodinate_sorted_bam +galaxy.datatypes.registry DEBUG 2024-02-23 13:13:46,013 [pN:main,p:74649,tN:MainThread] Loaded converter: CONVERTER_bam_to_qname_sorted_bam +galaxy.datatypes.registry DEBUG 2024-02-23 13:13:46,014 [pN:main,p:74649,tN:MainThread] Loaded converter: CONVERTER_cram_to_bam_0 +galaxy.datatypes.registry DEBUG 2024-02-23 13:13:46,016 [pN:main,p:74649,tN:MainThread] Loaded converter: CONVERTER_bed_to_gff_0 +galaxy.datatypes.registry DEBUG 2024-02-23 13:13:46,018 [pN:main,p:74649,tN:MainThread] Loaded converter: CONVERTER_interval_to_bgzip_0 +galaxy.datatypes.registry DEBUG 2024-02-23 13:13:46,020 [pN:main,p:74649,tN:MainThread] Loaded converter: CONVERTER_interval_to_tabix_0 +galaxy.datatypes.registry DEBUG 2024-02-23 13:13:46,022 [pN:main,p:74649,tN:MainThread] Loaded converter: CONVERTER_bed_gff_or_vcf_to_bigwig_0 +galaxy.datatypes.registry DEBUG 2024-02-23 13:13:46,023 [pN:main,p:74649,tN:MainThread] Loaded converter: CONVERTER_bed_to_fli_0 +galaxy.datatypes.registry DEBUG 2024-02-23 13:13:46,024 [pN:main,p:74649,tN:MainThread] Loaded converter: CONVERTER_bedgraph_to_bigwig +galaxy.datatypes.registry DEBUG 2024-02-23 13:13:46,025 [pN:main,p:74649,tN:MainThread] Loaded converter: CONVERTER_len_to_linecount +galaxy.datatypes.registry DEBUG 2024-02-23 13:13:46,026 [pN:main,p:74649,tN:MainThread] Loaded converter: CONVERTER_parquet_to_csv +galaxy.datatypes.registry DEBUG 2024-02-23 13:13:46,029 [pN:main,p:74649,tN:MainThread] Loaded converter: bigwigtowig +galaxy.datatypes.registry DEBUG 2024-02-23 13:13:46,031 [pN:main,p:74649,tN:MainThread] Loaded converter: CONVERTER_interval_to_bgzip_0 +galaxy.datatypes.registry DEBUG 2024-02-23 13:13:46,033 [pN:main,p:74649,tN:MainThread] Loaded converter: CONVERTER_interval_to_tabix_0 +galaxy.datatypes.registry DEBUG 2024-02-23 13:13:46,035 [pN:main,p:74649,tN:MainThread] Loaded converter: CONVERTER_bed_gff_or_vcf_to_bigwig_0 +galaxy.datatypes.registry DEBUG 2024-02-23 13:13:46,036 [pN:main,p:74649,tN:MainThread] Loaded converter: csv_to_tabular +galaxy.datatypes.registry DEBUG 2024-02-23 13:13:46,037 [pN:main,p:74649,tN:MainThread] Loaded converter: tabular_to_csv +galaxy.datatypes.registry DEBUG 2024-02-23 13:13:46,038 [pN:main,p:74649,tN:MainThread] Loaded converter: CONVERTER_fasta_to_tabular +galaxy.datatypes.registry DEBUG 2024-02-23 13:13:46,039 [pN:main,p:74649,tN:MainThread] Loaded converter: CONVERTER_fasta_to_bowtie_base_index +galaxy.datatypes.registry DEBUG 2024-02-23 13:13:46,040 [pN:main,p:74649,tN:MainThread] Loaded converter: CONVERTER_fasta_to_bowtie_color_index +galaxy.datatypes.registry DEBUG 2024-02-23 13:13:46,041 [pN:main,p:74649,tN:MainThread] Loaded converter: CONVERTER_fasta_to_2bit +galaxy.datatypes.registry DEBUG 2024-02-23 13:13:46,042 [pN:main,p:74649,tN:MainThread] Loaded converter: CONVERTER_fasta_to_len +galaxy.datatypes.registry DEBUG 2024-02-23 13:13:46,044 [pN:main,p:74649,tN:MainThread] Loaded converter: CONVERTER_fasta_to_fai +galaxy.datatypes.registry DEBUG 2024-02-23 13:13:46,045 [pN:main,p:74649,tN:MainThread] Loaded converter: CONVERTER_uncompressed_to_gz +galaxy.datatypes.registry DEBUG 2024-02-23 13:13:46,047 [pN:main,p:74649,tN:MainThread] Loaded converter: CONVERTER_gz_to_uncompressed +galaxy.datatypes.registry DEBUG 2024-02-23 13:13:46,048 [pN:main,p:74649,tN:MainThread] Loaded converter: CONVERTER_fastq_to_fqtoc0 +galaxy.datatypes.registry DEBUG 2024-02-23 13:13:46,049 [pN:main,p:74649,tN:MainThread] Loaded converter: CONVERTER_uncompressed_to_gz +galaxy.datatypes.registry DEBUG 2024-02-23 13:13:46,051 [pN:main,p:74649,tN:MainThread] Loaded converter: CONVERTER_gz_to_uncompressed +galaxy.datatypes.registry DEBUG 2024-02-23 13:13:46,052 [pN:main,p:74649,tN:MainThread] Loaded converter: CONVERTER_bz2_to_uncompressed +galaxy.datatypes.registry DEBUG 2024-02-23 13:13:46,053 [pN:main,p:74649,tN:MainThread] Loaded converter: CONVERTER_fastq_to_fqtoc0 +galaxy.datatypes.registry DEBUG 2024-02-23 13:13:46,055 [pN:main,p:74649,tN:MainThread] Loaded converter: CONVERTER_uncompressed_to_gz +galaxy.datatypes.registry DEBUG 2024-02-23 13:13:46,056 [pN:main,p:74649,tN:MainThread] Loaded converter: CONVERTER_gz_to_uncompressed +galaxy.datatypes.registry DEBUG 2024-02-23 13:13:46,057 [pN:main,p:74649,tN:MainThread] Loaded converter: CONVERTER_bz2_to_uncompressed +galaxy.datatypes.registry DEBUG 2024-02-23 13:13:46,058 [pN:main,p:74649,tN:MainThread] Loaded converter: CONVERTER_fastq_to_fqtoc0 +galaxy.datatypes.registry DEBUG 2024-02-23 13:13:46,060 [pN:main,p:74649,tN:MainThread] Loaded converter: CONVERTER_uncompressed_to_gz +galaxy.datatypes.registry DEBUG 2024-02-23 13:13:46,061 [pN:main,p:74649,tN:MainThread] Loaded converter: CONVERTER_gz_to_uncompressed +galaxy.datatypes.registry DEBUG 2024-02-23 13:13:46,062 [pN:main,p:74649,tN:MainThread] Loaded converter: CONVERTER_bz2_to_uncompressed +galaxy.datatypes.registry DEBUG 2024-02-23 13:13:46,064 [pN:main,p:74649,tN:MainThread] Loaded converter: CONVERTER_fastq_to_fqtoc0 +galaxy.datatypes.registry DEBUG 2024-02-23 13:13:46,065 [pN:main,p:74649,tN:MainThread] Loaded converter: CONVERTER_uncompressed_to_gz +galaxy.datatypes.registry DEBUG 2024-02-23 13:13:46,067 [pN:main,p:74649,tN:MainThread] Loaded converter: CONVERTER_gz_to_uncompressed +galaxy.datatypes.registry DEBUG 2024-02-23 13:13:46,069 [pN:main,p:74649,tN:MainThread] Loaded converter: CONVERTER_bz2_to_uncompressed +galaxy.datatypes.registry DEBUG 2024-02-23 13:13:46,070 [pN:main,p:74649,tN:MainThread] Loaded converter: CONVERTER_fastq_to_fqtoc0 +galaxy.datatypes.registry DEBUG 2024-02-23 13:13:46,072 [pN:main,p:74649,tN:MainThread] Loaded converter: CONVERTER_uncompressed_to_gz +galaxy.datatypes.registry DEBUG 2024-02-23 13:13:46,073 [pN:main,p:74649,tN:MainThread] Loaded converter: CONVERTER_gz_to_uncompressed +galaxy.datatypes.registry DEBUG 2024-02-23 13:13:46,074 [pN:main,p:74649,tN:MainThread] Loaded converter: CONVERTER_bz2_to_uncompressed +galaxy.datatypes.registry DEBUG 2024-02-23 13:13:46,075 [pN:main,p:74649,tN:MainThread] Loaded converter: CONVERTER_gff_to_bed_0 +galaxy.datatypes.registry DEBUG 2024-02-23 13:13:46,076 [pN:main,p:74649,tN:MainThread] Loaded converter: CONVERTER_gff_to_interval_index_0 +galaxy.datatypes.registry DEBUG 2024-02-23 13:13:46,078 [pN:main,p:74649,tN:MainThread] Loaded converter: CONVERTER_bed_gff_or_vcf_to_bigwig_0 +galaxy.datatypes.registry DEBUG 2024-02-23 13:13:46,079 [pN:main,p:74649,tN:MainThread] Loaded converter: CONVERTER_gff_to_fli_0 +galaxy.datatypes.registry DEBUG 2024-02-23 13:13:46,081 [pN:main,p:74649,tN:MainThread] Loaded converter: CONVERTER_interval_to_bgzip_0 +galaxy.datatypes.registry DEBUG 2024-02-23 13:13:46,083 [pN:main,p:74649,tN:MainThread] Loaded converter: CONVERTER_interval_to_tabix_0 +galaxy.datatypes.registry DEBUG 2024-02-23 13:13:46,085 [pN:main,p:74649,tN:MainThread] Loaded converter: CONVERTER_uncompressed_to_gz +galaxy.datatypes.registry DEBUG 2024-02-23 13:13:46,086 [pN:main,p:74649,tN:MainThread] Loaded converter: CONVERTER_gz_to_uncompressed +galaxy.datatypes.registry DEBUG 2024-02-23 13:13:46,087 [pN:main,p:74649,tN:MainThread] Loaded converter: CONVERTER_bz2_to_uncompressed +galaxy.datatypes.registry DEBUG 2024-02-23 13:13:46,089 [pN:main,p:74649,tN:MainThread] Loaded converter: CONVERTER_gff_to_interval_index_0 +galaxy.datatypes.registry DEBUG 2024-02-23 13:13:46,090 [pN:main,p:74649,tN:MainThread] Loaded converter: CONVERTER_bed_gff_or_vcf_to_bigwig_0 +galaxy.datatypes.registry DEBUG 2024-02-23 13:13:46,091 [pN:main,p:74649,tN:MainThread] Loaded converter: CONVERTER_interval_to_bed_0 +galaxy.datatypes.registry DEBUG 2024-02-23 13:13:46,092 [pN:main,p:74649,tN:MainThread] Loaded converter: CONVERTER_interval_to_bedstrict_0 +galaxy.datatypes.registry DEBUG 2024-02-23 13:13:46,093 [pN:main,p:74649,tN:MainThread] Loaded converter: CONVERTER_interval_to_bed6_0 +galaxy.datatypes.registry DEBUG 2024-02-23 13:13:46,094 [pN:main,p:74649,tN:MainThread] Loaded converter: CONVERTER_interval_to_bed12_0 +galaxy.datatypes.registry DEBUG 2024-02-23 13:13:46,097 [pN:main,p:74649,tN:MainThread] Loaded converter: CONVERTER_interval_to_bgzip_0 +galaxy.datatypes.registry DEBUG 2024-02-23 13:13:46,099 [pN:main,p:74649,tN:MainThread] Loaded converter: CONVERTER_interval_to_tabix_0 +galaxy.datatypes.registry DEBUG 2024-02-23 13:13:46,101 [pN:main,p:74649,tN:MainThread] Loaded converter: CONVERTER_interval_to_bigwig_0 +galaxy.datatypes.registry DEBUG 2024-02-23 13:13:46,102 [pN:main,p:74649,tN:MainThread] Loaded converter: CONVERTER_picard_interval_list_to_bed6 +galaxy.datatypes.registry DEBUG 2024-02-23 13:13:46,103 [pN:main,p:74649,tN:MainThread] Loaded converter: CONVERTER_tar_to_directory +galaxy.datatypes.registry DEBUG 2024-02-23 13:13:46,104 [pN:main,p:74649,tN:MainThread] Loaded converter: CONVERTER_uncompressed_to_gz +galaxy.datatypes.registry DEBUG 2024-02-23 13:13:46,106 [pN:main,p:74649,tN:MainThread] Loaded converter: CONVERTER_gz_to_uncompressed +galaxy.datatypes.registry DEBUG 2024-02-23 13:13:46,107 [pN:main,p:74649,tN:MainThread] Loaded converter: CONVERTER_uncompressed_to_gz +galaxy.datatypes.registry DEBUG 2024-02-23 13:13:46,109 [pN:main,p:74649,tN:MainThread] Loaded converter: CONVERTER_gz_to_uncompressed +galaxy.datatypes.registry DEBUG 2024-02-23 13:13:46,110 [pN:main,p:74649,tN:MainThread] Loaded converter: CONVERTER_uncompressed_to_gz +galaxy.datatypes.registry DEBUG 2024-02-23 13:13:46,111 [pN:main,p:74649,tN:MainThread] Loaded converter: CONVERTER_gz_to_uncompressed +galaxy.datatypes.registry DEBUG 2024-02-23 13:13:46,113 [pN:main,p:74649,tN:MainThread] Loaded converter: CONVERTER_maf_to_fasta_0 +galaxy.datatypes.registry DEBUG 2024-02-23 13:13:46,114 [pN:main,p:74649,tN:MainThread] Loaded converter: CONVERTER_maf_to_interval_0 +galaxy.datatypes.registry DEBUG 2024-02-23 13:13:46,116 [pN:main,p:74649,tN:MainThread] Loaded converter: CONVERTER_interval_to_tabix_0 +galaxy.datatypes.registry DEBUG 2024-02-23 13:13:46,119 [pN:main,p:74649,tN:MainThread] Loaded converter: CONVERTER_interval_to_bgzip_0 +galaxy.datatypes.registry DEBUG 2024-02-23 13:13:46,120 [pN:main,p:74649,tN:MainThread] Loaded converter: CONVERTER_bed_gff_or_vcf_to_bigwig_0 +galaxy.datatypes.registry DEBUG 2024-02-23 13:13:46,122 [pN:main,p:74649,tN:MainThread] Loaded converter: CONVERTER_interval_to_bgzip_0 +galaxy.datatypes.registry DEBUG 2024-02-23 13:13:46,125 [pN:main,p:74649,tN:MainThread] Loaded converter: CONVERTER_interval_to_tabix_0 +galaxy.datatypes.registry DEBUG 2024-02-23 13:13:46,126 [pN:main,p:74649,tN:MainThread] Loaded converter: CONVERTER_sam_to_unsorted_bam +galaxy.datatypes.registry DEBUG 2024-02-23 13:13:46,127 [pN:main,p:74649,tN:MainThread] Loaded converter: CONVERTER_bam_to_coodinate_sorted_bam +galaxy.datatypes.registry DEBUG 2024-02-23 13:13:46,129 [pN:main,p:74649,tN:MainThread] Loaded converter: CONVERTER_bam_to_qname_sorted_bam +galaxy.datatypes.registry DEBUG 2024-02-23 13:13:46,130 [pN:main,p:74649,tN:MainThread] Loaded converter: CONVERTER_sam_to_bigwig_0 +galaxy.datatypes.registry DEBUG 2024-02-23 13:13:46,131 [pN:main,p:74649,tN:MainThread] Loaded converter: tabular_to_dbnsfp +galaxy.datatypes.registry DEBUG 2024-02-23 13:13:46,132 [pN:main,p:74649,tN:MainThread] Loaded converter: tabular_to_csv +galaxy.datatypes.registry DEBUG 2024-02-23 13:13:46,134 [pN:main,p:74649,tN:MainThread] Loaded converter: CONVERTER_uncompressed_to_gz +galaxy.datatypes.registry DEBUG 2024-02-23 13:13:46,135 [pN:main,p:74649,tN:MainThread] Loaded converter: CONVERTER_gz_to_uncompressed +galaxy.datatypes.registry DEBUG 2024-02-23 13:13:46,138 [pN:main,p:74649,tN:MainThread] Loaded converter: CONVERTER_interval_to_bgzip_0 +galaxy.datatypes.registry DEBUG 2024-02-23 13:13:46,139 [pN:main,p:74649,tN:MainThread] Loaded converter: CONVERTER_vcf_to_vcf_bgzip_0 +galaxy.datatypes.registry DEBUG 2024-02-23 13:13:46,141 [pN:main,p:74649,tN:MainThread] Loaded converter: CONVERTER_interval_to_tabix_0 +galaxy.datatypes.registry DEBUG 2024-02-23 13:13:46,142 [pN:main,p:74649,tN:MainThread] Loaded converter: CONVERTER_bed_gff_or_vcf_to_bigwig_0 +galaxy.datatypes.registry DEBUG 2024-02-23 13:13:46,144 [pN:main,p:74649,tN:MainThread] Loaded converter: CONVERTER_uncompressed_to_gz +galaxy.datatypes.registry DEBUG 2024-02-23 13:13:46,145 [pN:main,p:74649,tN:MainThread] Loaded converter: CONVERTER_bcf_uncompressed_to_bcf +galaxy.datatypes.registry DEBUG 2024-02-23 13:13:46,147 [pN:main,p:74649,tN:MainThread] Loaded converter: CONVERTER_bcf_uncompressed_to_bcf +galaxy.datatypes.registry DEBUG 2024-02-23 13:13:46,148 [pN:main,p:74649,tN:MainThread] Loaded converter: CONVERTER_wig_to_bigwig +galaxy.datatypes.registry DEBUG 2024-02-23 13:13:46,149 [pN:main,p:74649,tN:MainThread] Loaded converter: CONVERTER_wiggle_to_interval_0 +galaxy.datatypes.registry DEBUG 2024-02-23 13:13:46,150 [pN:main,p:74649,tN:MainThread] Loaded converter: CONVERTER_vcf_bgzip_to_tabix_0 +galaxy.datatypes.registry DEBUG 2024-02-23 13:13:46,152 [pN:main,p:74649,tN:MainThread] Loaded converter: CONVERTER_gz_to_uncompressed +galaxy.datatypes.registry DEBUG 2024-02-23 13:13:46,153 [pN:main,p:74649,tN:MainThread] Loaded converter: lped2fpedconvert +galaxy.datatypes.registry DEBUG 2024-02-23 13:13:46,154 [pN:main,p:74649,tN:MainThread] Loaded converter: lped2pbedconvert +galaxy.datatypes.registry DEBUG 2024-02-23 13:13:46,154 [pN:main,p:74649,tN:MainThread] Loaded converter: pbed2lpedconvert +galaxy.datatypes.registry DEBUG 2024-02-23 13:13:46,155 [pN:main,p:74649,tN:MainThread] Loaded converter: pbed2ldindepconvert +galaxy.datatypes.registry DEBUG 2024-02-23 13:13:46,157 [pN:main,p:74649,tN:MainThread] Loaded converter: CONVERTER_uncompressed_to_gz +galaxy.datatypes.registry DEBUG 2024-02-23 13:13:46,158 [pN:main,p:74649,tN:MainThread] Loaded converter: CONVERTER_gz_to_uncompressed +galaxy.datatypes.registry DEBUG 2024-02-23 13:13:46,160 [pN:main,p:74649,tN:MainThread] Loaded converter: CONVERTER_biom +galaxy.datatypes.registry DEBUG 2024-02-23 13:13:46,162 [pN:main,p:74649,tN:MainThread] Loaded converter: CONVERTER_biom +galaxy.datatypes.registry DEBUG 2024-02-23 13:13:46,168 [pN:main,p:74649,tN:MainThread] Loaded converter: CONVERTER_molecules +galaxy.datatypes.registry DEBUG 2024-02-23 13:13:46,173 [pN:main,p:74649,tN:MainThread] Loaded converter: CONVERTER_molecules +galaxy.datatypes.registry DEBUG 2024-02-23 13:13:46,178 [pN:main,p:74649,tN:MainThread] Loaded converter: CONVERTER_molecules +galaxy.datatypes.registry DEBUG 2024-02-23 13:13:46,179 [pN:main,p:74649,tN:MainThread] Loaded converter: CONVERTER_SMILES_to_MOL +galaxy.datatypes.registry DEBUG 2024-02-23 13:13:46,184 [pN:main,p:74649,tN:MainThread] Loaded converter: CONVERTER_molecules +galaxy.datatypes.registry DEBUG 2024-02-23 13:13:46,186 [pN:main,p:74649,tN:MainThread] Loaded converter: CONVERTER_smiles_to_smiles +galaxy.datatypes.registry DEBUG 2024-02-23 13:13:46,191 [pN:main,p:74649,tN:MainThread] Loaded converter: CONVERTER_molecules +galaxy.datatypes.registry DEBUG 2024-02-23 13:13:46,196 [pN:main,p:74649,tN:MainThread] Loaded converter: CONVERTER_molecules +galaxy.datatypes.registry DEBUG 2024-02-23 13:13:46,201 [pN:main,p:74649,tN:MainThread] Loaded converter: CONVERTER_molecules +galaxy.datatypes.registry DEBUG 2024-02-23 13:13:46,206 [pN:main,p:74649,tN:MainThread] Loaded converter: CONVERTER_molecules +galaxy.datatypes.registry DEBUG 2024-02-23 13:13:46,212 [pN:main,p:74649,tN:MainThread] Loaded converter: CONVERTER_molecules +galaxy.datatypes.registry DEBUG 2024-02-23 13:13:46,217 [pN:main,p:74649,tN:MainThread] Loaded converter: CONVERTER_molecules +galaxy.datatypes.registry DEBUG 2024-02-23 13:13:46,218 [pN:main,p:74649,tN:MainThread] Loaded converter: CONVERTER_inchi_to_mol +galaxy.datatypes.registry DEBUG 2024-02-23 13:13:46,223 [pN:main,p:74649,tN:MainThread] Loaded converter: CONVERTER_molecules +galaxy.datatypes.registry DEBUG 2024-02-23 13:13:46,228 [pN:main,p:74649,tN:MainThread] Loaded converter: CONVERTER_molecules +galaxy.datatypes.registry DEBUG 2024-02-23 13:13:46,234 [pN:main,p:74649,tN:MainThread] Loaded converter: CONVERTER_molecules +galaxy.datatypes.registry DEBUG 2024-02-23 13:13:46,239 [pN:main,p:74649,tN:MainThread] Loaded converter: CONVERTER_molecules +galaxy.datatypes.registry DEBUG 2024-02-23 13:13:46,244 [pN:main,p:74649,tN:MainThread] Loaded converter: CONVERTER_molecules +galaxy.datatypes.registry DEBUG 2024-02-23 13:13:46,249 [pN:main,p:74649,tN:MainThread] Loaded converter: CONVERTER_molecules +galaxy.datatypes.registry DEBUG 2024-02-23 13:13:46,254 [pN:main,p:74649,tN:MainThread] Loaded converter: CONVERTER_molecules +galaxy.datatypes.registry DEBUG 2024-02-23 13:13:46,260 [pN:main,p:74649,tN:MainThread] Loaded converter: CONVERTER_molecules +galaxy.datatypes.registry DEBUG 2024-02-23 13:13:46,265 [pN:main,p:74649,tN:MainThread] Loaded converter: CONVERTER_molecules +galaxy.datatypes.registry DEBUG 2024-02-23 13:13:46,270 [pN:main,p:74649,tN:MainThread] Loaded converter: CONVERTER_molecules +galaxy.datatypes.registry DEBUG 2024-02-23 13:13:46,271 [pN:main,p:74649,tN:MainThread] Loaded converter: CONVERTER_mol2_to_mol +galaxy.datatypes.registry DEBUG 2024-02-23 13:13:46,277 [pN:main,p:74649,tN:MainThread] Loaded converter: CONVERTER_molecules +galaxy.datatypes.registry DEBUG 2024-02-23 13:13:46,278 [pN:main,p:74649,tN:MainThread] Loaded converter: CONVERTER_cml_to_smiles +galaxy.datatypes.registry DEBUG 2024-02-23 13:13:46,283 [pN:main,p:74649,tN:MainThread] Loaded converter: CONVERTER_molecules +galaxy.datatypes.registry DEBUG 2024-02-23 13:13:46,288 [pN:main,p:74649,tN:MainThread] Loaded converter: CONVERTER_molecules +galaxy.datatypes.registry DEBUG 2024-02-23 13:13:46,294 [pN:main,p:74649,tN:MainThread] Loaded converter: CONVERTER_molecules +galaxy.datatypes.registry DEBUG 2024-02-23 13:13:46,295 [pN:main,p:74649,tN:MainThread] Loaded converter: CONVERTER_Pdb_to_Gro_0 +galaxy.datatypes.registry DEBUG 2024-02-23 13:13:46,297 [pN:main,p:74649,tN:MainThread] Loaded converter: CONVERTER_mdconvert +galaxy.datatypes.registry DEBUG 2024-02-23 13:13:46,299 [pN:main,p:74649,tN:MainThread] Loaded converter: CONVERTER_mdconvert +galaxy.datatypes.registry DEBUG 2024-02-23 13:13:46,301 [pN:main,p:74649,tN:MainThread] Loaded converter: CONVERTER_mdconvert +galaxy.datatypes.registry DEBUG 2024-02-23 13:13:46,303 [pN:main,p:74649,tN:MainThread] Loaded converter: CONVERTER_mdconvert +galaxy.datatypes.registry DEBUG 2024-02-23 13:13:46,305 [pN:main,p:74649,tN:MainThread] Loaded converter: CONVERTER_mdconvert +galaxy.datatypes.registry DEBUG 2024-02-23 13:13:46,307 [pN:main,p:74649,tN:MainThread] Loaded converter: CONVERTER_mdconvert +galaxy.datatypes.registry DEBUG 2024-02-23 13:13:46,308 [pN:main,p:74649,tN:MainThread] Loaded converter: CONVERTER_Gro_to_Pdb_0 +galaxy.datatypes.registry DEBUG 2024-02-23 13:13:46,310 [pN:main,p:74649,tN:MainThread] Loaded converter: CONVERTER_ref_to_seq_taxomony +galaxy.datatypes.registry DEBUG 2024-02-23 13:13:46,311 [pN:main,p:74649,tN:MainThread] Loaded converter: CONVERTER_neostorezip_to_neostore +galaxy.datatypes.registry DEBUG 2024-02-23 13:13:46,312 [pN:main,p:74649,tN:MainThread] Loaded external metadata tool: __SET_METADATA__ +galaxy.tools.special_tools DEBUG 2024-02-23 13:13:46,314 [pN:main,p:74649,tN:MainThread] Loaded history export tool: __EXPORT_HISTORY__ +galaxy.tools.special_tools DEBUG 2024-02-23 13:13:46,315 [pN:main,p:74649,tN:MainThread] Loaded history export to uri tool: __EXPORT_HISTORY_TO_URI__ +galaxy.tools.special_tools DEBUG 2024-02-23 13:13:46,316 [pN:main,p:74649,tN:MainThread] Loaded history import tool: __IMPORT_HISTORY__ +galaxy.tools.special_tools DEBUG 2024-02-23 13:13:46,317 [pN:main,p:74649,tN:MainThread] Loaded data fetch tool: __DATA_FETCH__ +galaxy.visualization.plugins.registry INFO 2024-02-23 13:13:46,318 [pN:main,p:74649,tN:MainThread] VisualizationsRegistry, loaded plugin: PCA_3Dplot +galaxy.visualization.plugins.registry INFO 2024-02-23 13:13:46,319 [pN:main,p:74649,tN:MainThread] VisualizationsRegistry, loaded plugin: aequatus +galaxy.visualization.plugins.registry INFO 2024-02-23 13:13:46,320 [pN:main,p:74649,tN:MainThread] VisualizationsRegistry, loaded plugin: annotate_image +galaxy.visualization.plugins.config_parser INFO 2024-02-23 13:13:46,321 [pN:main,p:74649,tN:MainThread] template syntax is deprecated: use entry_point instead +galaxy.visualization.plugins.registry INFO 2024-02-23 13:13:46,321 [pN:main,p:74649,tN:MainThread] VisualizationsRegistry, loaded plugin: chiraviz +galaxy.visualization.plugins.config_parser INFO 2024-02-23 13:13:46,322 [pN:main,p:74649,tN:MainThread] Visualizations plugin disabled: Circster. Skipping... +galaxy.visualization.plugins.config_parser INFO 2024-02-23 13:13:46,322 [pN:main,p:74649,tN:MainThread] template syntax is deprecated: use entry_point instead +galaxy.visualization.plugins.registry INFO 2024-02-23 13:13:46,322 [pN:main,p:74649,tN:MainThread] VisualizationsRegistry, loaded plugin: csg +galaxy.visualization.plugins.registry INFO 2024-02-23 13:13:46,323 [pN:main,p:74649,tN:MainThread] VisualizationsRegistry, loaded plugin: cytoscape +galaxy.visualization.plugins.registry INFO 2024-02-23 13:13:46,325 [pN:main,p:74649,tN:MainThread] VisualizationsRegistry, loaded plugin: drawrna +galaxy.visualization.plugins.registry INFO 2024-02-23 13:13:46,326 [pN:main,p:74649,tN:MainThread] VisualizationsRegistry, loaded plugin: editor +galaxy.visualization.plugins.registry INFO 2024-02-23 13:13:46,327 [pN:main,p:74649,tN:MainThread] VisualizationsRegistry, loaded plugin: example +galaxy.visualization.plugins.config_parser INFO 2024-02-23 13:13:46,328 [pN:main,p:74649,tN:MainThread] template syntax is deprecated: use entry_point instead +galaxy.visualization.plugins.registry INFO 2024-02-23 13:13:46,328 [pN:main,p:74649,tN:MainThread] VisualizationsRegistry, loaded plugin: fits_image_viewer +galaxy.visualization.plugins.config_parser INFO 2024-02-23 13:13:46,329 [pN:main,p:74649,tN:MainThread] template syntax is deprecated: use entry_point instead +galaxy.visualization.plugins.registry INFO 2024-02-23 13:13:46,329 [pN:main,p:74649,tN:MainThread] VisualizationsRegistry, loaded plugin: graphviz +galaxy.visualization.plugins.registry INFO 2024-02-23 13:13:46,330 [pN:main,p:74649,tN:MainThread] VisualizationsRegistry, loaded plugin: h5web +galaxy.visualization.plugins.registry INFO 2024-02-23 13:13:46,332 [pN:main,p:74649,tN:MainThread] VisualizationsRegistry, loaded plugin: heatmap_cluster +galaxy.visualization.plugins.registry INFO 2024-02-23 13:13:46,335 [pN:main,p:74649,tN:MainThread] VisualizationsRegistry, loaded plugin: heatmap_default +galaxy.visualization.plugins.config_parser INFO 2024-02-23 13:13:46,335 [pN:main,p:74649,tN:MainThread] template syntax is deprecated: use entry_point instead +galaxy.visualization.plugins.registry INFO 2024-02-23 13:13:46,335 [pN:main,p:74649,tN:MainThread] VisualizationsRegistry, loaded plugin: hivtrace +galaxy.visualization.plugins.config_parser INFO 2024-02-23 13:13:46,336 [pN:main,p:74649,tN:MainThread] template syntax is deprecated: use entry_point instead +galaxy.visualization.plugins.registry INFO 2024-02-23 13:13:46,336 [pN:main,p:74649,tN:MainThread] VisualizationsRegistry, loaded plugin: hyphyvision +galaxy.visualization.plugins.registry INFO 2024-02-23 13:13:46,338 [pN:main,p:74649,tN:MainThread] VisualizationsRegistry, loaded plugin: jqplot_bar +galaxy.visualization.plugins.registry INFO 2024-02-23 13:13:46,340 [pN:main,p:74649,tN:MainThread] VisualizationsRegistry, loaded plugin: jqplot_box +galaxy.visualization.plugins.registry INFO 2024-02-23 13:13:46,342 [pN:main,p:74649,tN:MainThread] VisualizationsRegistry, loaded plugin: jqplot_histogram +galaxy.visualization.plugins.registry INFO 2024-02-23 13:13:46,345 [pN:main,p:74649,tN:MainThread] VisualizationsRegistry, loaded plugin: jqplot_line +galaxy.visualization.plugins.registry INFO 2024-02-23 13:13:46,347 [pN:main,p:74649,tN:MainThread] VisualizationsRegistry, loaded plugin: jqplot_scatter +galaxy.visualization.plugins.config_parser INFO 2024-02-23 13:13:46,347 [pN:main,p:74649,tN:MainThread] template syntax is deprecated: use entry_point instead +galaxy.visualization.plugins.registry INFO 2024-02-23 13:13:46,347 [pN:main,p:74649,tN:MainThread] VisualizationsRegistry, loaded plugin: audio_player +galaxy.visualization.plugins.config_parser INFO 2024-02-23 13:13:46,348 [pN:main,p:74649,tN:MainThread] template syntax is deprecated: use entry_point instead +galaxy.visualization.plugins.registry INFO 2024-02-23 13:13:46,348 [pN:main,p:74649,tN:MainThread] VisualizationsRegistry, loaded plugin: video_player +galaxy.visualization.plugins.registry INFO 2024-02-23 13:13:46,348 [pN:main,p:74649,tN:MainThread] VisualizationsRegistry, loaded plugin: msa +galaxy.visualization.plugins.config_parser INFO 2024-02-23 13:13:46,350 [pN:main,p:74649,tN:MainThread] template syntax is deprecated: use entry_point instead +galaxy.visualization.plugins.registry INFO 2024-02-23 13:13:46,350 [pN:main,p:74649,tN:MainThread] VisualizationsRegistry, loaded plugin: mvpapp +galaxy.visualization.plugins.registry INFO 2024-02-23 13:13:46,351 [pN:main,p:74649,tN:MainThread] VisualizationsRegistry, loaded plugin: ngl +galaxy.visualization.plugins.registry INFO 2024-02-23 13:13:46,352 [pN:main,p:74649,tN:MainThread] VisualizationsRegistry, loaded plugin: nora +galaxy.visualization.plugins.registry INFO 2024-02-23 13:13:46,355 [pN:main,p:74649,tN:MainThread] VisualizationsRegistry, loaded plugin: nvd3_bar +galaxy.visualization.plugins.registry INFO 2024-02-23 13:13:46,357 [pN:main,p:74649,tN:MainThread] VisualizationsRegistry, loaded plugin: nvd3_bar_stacked +galaxy.visualization.plugins.registry INFO 2024-02-23 13:13:46,359 [pN:main,p:74649,tN:MainThread] VisualizationsRegistry, loaded plugin: nvd3_histogram +galaxy.visualization.plugins.registry INFO 2024-02-23 13:13:46,361 [pN:main,p:74649,tN:MainThread] VisualizationsRegistry, loaded plugin: nvd3_histogram_discrete +galaxy.visualization.plugins.registry INFO 2024-02-23 13:13:46,363 [pN:main,p:74649,tN:MainThread] VisualizationsRegistry, loaded plugin: nvd3_horizontal +galaxy.visualization.plugins.registry INFO 2024-02-23 13:13:46,365 [pN:main,p:74649,tN:MainThread] VisualizationsRegistry, loaded plugin: nvd3_horizontal_stacked +galaxy.visualization.plugins.registry INFO 2024-02-23 13:13:46,367 [pN:main,p:74649,tN:MainThread] VisualizationsRegistry, loaded plugin: nvd3_line +galaxy.visualization.plugins.registry INFO 2024-02-23 13:13:46,369 [pN:main,p:74649,tN:MainThread] VisualizationsRegistry, loaded plugin: nvd3_line_focus +galaxy.visualization.plugins.registry INFO 2024-02-23 13:13:46,371 [pN:main,p:74649,tN:MainThread] VisualizationsRegistry, loaded plugin: nvd3_pie +galaxy.visualization.plugins.registry INFO 2024-02-23 13:13:46,373 [pN:main,p:74649,tN:MainThread] VisualizationsRegistry, loaded plugin: nvd3_scatter +galaxy.visualization.plugins.registry INFO 2024-02-23 13:13:46,375 [pN:main,p:74649,tN:MainThread] VisualizationsRegistry, loaded plugin: nvd3_stackedarea +galaxy.visualization.plugins.registry INFO 2024-02-23 13:13:46,377 [pN:main,p:74649,tN:MainThread] VisualizationsRegistry, loaded plugin: nvd3_stackedarea_full +galaxy.visualization.plugins.registry INFO 2024-02-23 13:13:46,379 [pN:main,p:74649,tN:MainThread] VisualizationsRegistry, loaded plugin: nvd3_stackedarea_stream +galaxy.visualization.plugins.registry INFO 2024-02-23 13:13:46,380 [pN:main,p:74649,tN:MainThread] VisualizationsRegistry, loaded plugin: openlayers +galaxy.visualization.plugins.registry INFO 2024-02-23 13:13:46,381 [pN:main,p:74649,tN:MainThread] VisualizationsRegistry, loaded plugin: openseadragon +galaxy.visualization.plugins.registry INFO 2024-02-23 13:13:46,382 [pN:main,p:74649,tN:MainThread] VisualizationsRegistry, loaded plugin: phylocanvas +galaxy.visualization.plugins.registry INFO 2024-02-23 13:13:46,383 [pN:main,p:74649,tN:MainThread] VisualizationsRegistry, loaded plugin: phyloviz +galaxy.visualization.plugins.registry INFO 2024-02-23 13:13:46,384 [pN:main,p:74649,tN:MainThread] VisualizationsRegistry, loaded plugin: pv +galaxy.visualization.plugins.registry INFO 2024-02-23 13:13:46,385 [pN:main,p:74649,tN:MainThread] VisualizationsRegistry, loaded plugin: scatterplot +galaxy.visualization.plugins.config_parser INFO 2024-02-23 13:13:46,386 [pN:main,p:74649,tN:MainThread] Visualizations plugin disabled: Sweepster. Skipping... +galaxy.visualization.plugins.registry INFO 2024-02-23 13:13:46,386 [pN:main,p:74649,tN:MainThread] VisualizationsRegistry, loaded plugin: trackster +galaxy.visualization.plugins.registry INFO 2024-02-23 13:13:46,387 [pN:main,p:74649,tN:MainThread] VisualizationsRegistry, loaded plugin: ts_visjs +galaxy.visualization.plugins.config_parser INFO 2024-02-23 13:13:46,387 [pN:main,p:74649,tN:MainThread] template syntax is deprecated: use entry_point instead +galaxy.visualization.plugins.registry INFO 2024-02-23 13:13:46,387 [pN:main,p:74649,tN:MainThread] VisualizationsRegistry, loaded plugin: unipept +galaxy.visualization.plugins.registry INFO 2024-02-23 13:13:46,388 [pN:main,p:74649,tN:MainThread] VisualizationsRegistry, loaded plugin: venn +galaxy.tours._impl INFO 2024-02-23 13:13:46,412 [pN:main,p:74649,tN:MainThread] Loaded tour 'core.galaxy_ui' +galaxy.tours._impl INFO 2024-02-23 13:13:46,429 [pN:main,p:74649,tN:MainThread] Loaded tour 'core.deferred' +galaxy.tours._impl INFO 2024-02-23 13:13:46,441 [pN:main,p:74649,tN:MainThread] Loaded tour 'core.history' +galaxy.tours._impl INFO 2024-02-23 13:13:46,452 [pN:main,p:74649,tN:MainThread] Loaded tour 'core.windows' +galaxy.workflow.scheduling_manager INFO 2024-02-23 13:13:46,458 [pN:main,p:74649,tN:MainThread] No workflow schedulers plugin config file defined, using default scheduler. +galaxy.web_stack.handlers INFO 2024-02-23 13:13:46,458 [pN:main,p:74649,tN:MainThread] WorkflowSchedulingManager: No job handler assignment method is set, defaulting to 'HANDLER_ASSIGNMENT_METHODS.DB_SKIP_LOCKED', set the `assign_with` attribute on <handlers> to override the default +galaxy.workflow.scheduling_manager DEBUG 2024-02-23 13:13:46,458 [pN:main,p:74649,tN:MainThread] Starting workflow schedulers +galaxy.app INFO 2024-02-23 13:13:46,461 [pN:main,p:74649,tN:MainThread] Galaxy app startup finished (3665.046 ms) +galaxy.web.framework.base DEBUG 2024-02-23 13:13:46,488 [pN:main,p:74649,tN:MainThread] Enabling 'user' controller, class: User +galaxy.web.framework.base DEBUG 2024-02-23 13:13:46,489 [pN:main,p:74649,tN:MainThread] Enabling 'data_manager' controller, class: DataManager +galaxy.web.framework.base DEBUG 2024-02-23 13:13:46,489 [pN:main,p:74649,tN:MainThread] Enabling 'async' controller, class: ASync +galaxy.web.framework.base DEBUG 2024-02-23 13:13:46,490 [pN:main,p:74649,tN:MainThread] Enabling 'tag' controller, class: TagsController +galaxy.web.framework.base DEBUG 2024-02-23 13:13:46,495 [pN:main,p:74649,tN:MainThread] Enabling 'page' controller, class: PageController +galaxy.web.framework.base DEBUG 2024-02-23 13:13:46,496 [pN:main,p:74649,tN:MainThread] Enabling 'root' controller, class: RootController +galaxy.web.framework.base DEBUG 2024-02-23 13:13:46,496 [pN:main,p:74649,tN:MainThread] Enabling 'tool_runner' controller, class: ToolRunner +galaxy.web.framework.base DEBUG 2024-02-23 13:13:46,497 [pN:main,p:74649,tN:MainThread] Enabling 'error' controller, class: Error +galaxy.web.framework.base DEBUG 2024-02-23 13:13:46,497 [pN:main,p:74649,tN:MainThread] Enabling 'forms' controller, class: Forms +galaxy.web.framework.base DEBUG 2024-02-23 13:13:46,512 [pN:main,p:74649,tN:MainThread] Enabling 'admin_toolshed' controller, class: AdminGalaxy +galaxy.web.framework.base DEBUG 2024-02-23 13:13:46,512 [pN:main,p:74649,tN:MainThread] Enabling 'admin_toolshed' controller, class: AdminToolshed +galaxy.web.framework.base DEBUG 2024-02-23 13:13:46,514 [pN:main,p:74649,tN:MainThread] Enabling 'visualization' controller, class: VisualizationController +galaxy.web.framework.base DEBUG 2024-02-23 13:13:46,514 [pN:main,p:74649,tN:MainThread] Enabling 'shed_tool_static' controller, class: ShedToolStatic +galaxy.web.framework.base DEBUG 2024-02-23 13:13:46,515 [pN:main,p:74649,tN:MainThread] Enabling 'authnz' controller, class: JSAppLauncher +galaxy.web.framework.base DEBUG 2024-02-23 13:13:46,515 [pN:main,p:74649,tN:MainThread] Enabling 'authnz' controller, class: OIDC +galaxy.web.framework.base DEBUG 2024-02-23 13:13:46,517 [pN:main,p:74649,tN:MainThread] Enabling 'workflow' controller, class: WorkflowController +galaxy.web.framework.base DEBUG 2024-02-23 13:13:46,518 [pN:main,p:74649,tN:MainThread] Enabling 'history' controller, class: HistoryController +galaxy.web.framework.base DEBUG 2024-02-23 13:13:46,548 [pN:main,p:74649,tN:MainThread] Enabling 'dataset' controller, class: DatasetInterface +galaxy.web.framework.base DEBUG 2024-02-23 13:13:46,548 [pN:main,p:74649,tN:MainThread] Enabling 'admin' controller, class: AdminGalaxy +galaxy.web.framework.base DEBUG 2024-02-23 13:13:47,269 [pN:main,p:74649,tN:MainThread] Enabling 'library_datasets' API controller, class: LibraryDatasetsController +galaxy.web.framework.base DEBUG 2024-02-23 13:13:47,423 [pN:main,p:74649,tN:MainThread] Enabling 'jobs' API controller, class: JobController +galaxy.web.framework.base DEBUG 2024-02-23 13:13:47,544 [pN:main,p:74649,tN:MainThread] Enabling 'job_files' API controller, class: JobFilesAPIController +galaxy.web.framework.base DEBUG 2024-02-23 13:13:47,592 [pN:main,p:74649,tN:MainThread] Enabling 'toolshed' API controller, class: ToolShedController +galaxy.web.framework.base DEBUG 2024-02-23 13:13:47,608 [pN:main,p:74649,tN:MainThread] Enabling 'tools' API controller, class: ToolsController +galaxy.web.framework.base DEBUG 2024-02-23 13:13:47,730 [pN:main,p:74649,tN:MainThread] Enabling 'trs_consumer' API controller, class: TrsConsumeAPIController +galaxy.web.framework.base DEBUG 2024-02-23 13:13:47,731 [pN:main,p:74649,tN:MainThread] Enabling 'history_dataset_extended_metadata' API controller, class: HistoryDatasetExtendMetadataController +galaxy.web.framework.base DEBUG 2024-02-23 13:13:47,731 [pN:main,p:74649,tN:MainThread] Enabling 'library_dataset_extended_metadata' API controller, class: LibraryDatasetExtendMetadataController +galaxy.web.framework.base DEBUG 2024-02-23 13:13:47,731 [pN:main,p:74649,tN:MainThread] Enabling 'container_resolution' API controller, class: ContainerResolutionAPIController +galaxy.web.framework.base DEBUG 2024-02-23 13:13:47,732 [pN:main,p:74649,tN:MainThread] Enabling 'job_ports' API controller, class: JobPortsAPIController +galaxy.web.framework.base DEBUG 2024-02-23 13:13:47,733 [pN:main,p:74649,tN:MainThread] Enabling 'tool_dependencies' API controller, class: ToolDependenciesAPIController +galaxy.web.framework.base DEBUG 2024-02-23 13:13:47,874 [pN:main,p:74649,tN:MainThread] Enabling 'history_content_provenance' API controller, class: HDAProvenanceController +galaxy.web.framework.base DEBUG 2024-02-23 13:13:47,874 [pN:main,p:74649,tN:MainThread] Enabling 'ldda_provenance' API controller, class: LDDAProvenanceController +galaxy.web.framework.base DEBUG 2024-02-23 13:13:47,874 [pN:main,p:74649,tN:MainThread] Enabling 'tool_entry_points' API controller, class: ToolEntryPointsAPIController +galaxy.web.framework.base DEBUG 2024-02-23 13:13:48,009 [pN:main,p:74649,tN:MainThread] Enabling 'authenticate' API controller, class: AuthenticationController +galaxy.web.framework.base DEBUG 2024-02-23 13:13:48,424 [pN:main,p:74649,tN:MainThread] Enabling 'trs_search' API controller, class: TrsSearchAPIController +galaxy.web.framework.base DEBUG 2024-02-23 13:13:48,477 [pN:main,p:74649,tN:MainThread] Enabling 'tool_shed_repositories' API controller, class: ToolShedRepositoriesController +galaxy.web.framework.base DEBUG 2024-02-23 13:13:48,666 [pN:main,p:74649,tN:MainThread] Enabling 'forms' API controller, class: FormDefinitionAPIController +galaxy.web.framework.base DEBUG 2024-02-23 13:13:48,947 [pN:main,p:74649,tN:MainThread] Enabling 'workflows' API controller, class: WorkflowsAPIController +galaxy.web.framework.base DEBUG 2024-02-23 13:13:48,947 [pN:main,p:74649,tN:MainThread] Enabling 'uploads' API controller, class: UploadsAPIController +galaxy.web.framework.base DEBUG 2024-02-23 13:13:49,744 [pN:main,p:74649,tN:MainThread] Enabling 'history_annotations' API controller, class: HistoryAnnotationsController +galaxy.web.framework.base DEBUG 2024-02-23 13:13:49,744 [pN:main,p:74649,tN:MainThread] Enabling 'history_content_annotations' API controller, class: HistoryContentAnnotationsController +galaxy.web.framework.base DEBUG 2024-02-23 13:13:49,744 [pN:main,p:74649,tN:MainThread] Enabling 'workflow_annotations' API controller, class: WorkflowAnnotationsController +galaxy.web.framework.base DEBUG 2024-02-23 13:13:49,818 [pN:main,p:74649,tN:MainThread] Enabling 'visualizations' API controller, class: VisualizationsController +galaxy.web.framework.base DEBUG 2024-02-23 13:13:49,818 [pN:main,p:74649,tN:MainThread] Enabling 'sanitize_allow' API controller, class: SanitizeAllowController +galaxy.web.framework.base DEBUG 2024-02-23 13:13:49,819 [pN:main,p:74649,tN:MainThread] Enabling 'page_revisions' API controller, class: PageRevisionsController +galaxy.web.framework.base DEBUG 2024-02-23 13:13:49,913 [pN:main,p:74649,tN:MainThread] Enabling 'library_contents' API controller, class: LibraryContentsController +galaxy.web.framework.base DEBUG 2024-02-23 13:13:50,034 [pN:main,p:74649,tN:MainThread] Enabling 'users' API controller, class: UserAPIController +galaxy.web.framework.base DEBUG 2024-02-23 13:13:50,034 [pN:main,p:74649,tN:MainThread] Enabling 'cloudauthz' API controller, class: CloudAuthzController +galaxy.web.framework.base DEBUG 2024-02-23 13:13:50,035 [pN:main,p:74649,tN:MainThread] Enabling 'webhooks' API controller, class: WebhooksController +galaxy.web.framework.base DEBUG 2024-02-23 13:13:50,109 [pN:main,p:74649,tN:MainThread] Enabling 'plugins' API controller, class: PluginsController +galaxy.web.framework.base DEBUG 2024-02-23 13:13:50,147 [pN:main,p:74649,tN:MainThread] Enabling 'dynamic_tools' API controller, class: DynamicToolsController +galaxy.webapps.util DEBUG 2024-02-23 13:13:50,430 [pN:main,p:74649,tN:MainThread] Enabling 'paste.httpexceptions' middleware +galaxy.webapps.util DEBUG 2024-02-23 13:13:50,430 [pN:main,p:74649,tN:MainThread] Enabling 'RemoteUser' middleware +galaxy.webapps.util DEBUG 2024-02-23 13:13:50,430 [pN:main,p:74649,tN:MainThread] Enabling 'ErrorMiddleware' middleware +galaxy.webapps.util DEBUG 2024-02-23 13:13:50,430 [pN:main,p:74649,tN:MainThread] Enabling 'TusMiddleware' middleware +galaxy.webapps.util DEBUG 2024-02-23 13:13:50,430 [pN:main,p:74649,tN:MainThread] Enabling 'XForwardedHostMiddleware' middleware +galaxy.webapps.util DEBUG 2024-02-23 13:13:50,430 [pN:main,p:74649,tN:MainThread] Enabling 'RequestIDMiddleware' middleware +galaxy.webapps.util DEBUG 2024-02-23 13:13:50,430 [pN:main,p:74649,tN:MainThread] Enabling 'build_url_map' middleware +galaxy.webapps.galaxy.buildapp DEBUG 2024-02-23 13:13:50,431 [pN:main,p:74649,tN:MainThread] Prior to webapp return, Galaxy thread <_MainThread(MainThread, started 140550736676672)> is alive. +galaxy.web_stack DEBUG 2024-02-23 13:13:52,070 [pN:main.1,p:74853,tN:Thread-2] server_name set to: main.1 +galaxy.jobs.manager DEBUG 2024-02-23 13:13:52,080 [pN:main.1,p:74853,tN:Thread-2] Initializing job handler +galaxy.jobs INFO 2024-02-23 13:13:52,080 [pN:main.1,p:74853,tN:Thread-2] Handler 'main.1' will load all configured runner plugins +galaxy.jobs.runners.state_handler_factory DEBUG 2024-02-23 13:13:52,087 [pN:main.1,p:74853,tN:Thread-2] Loaded 'failure' state handler from module galaxy.jobs.runners.state_handlers.resubmit +galaxy.jobs DEBUG 2024-02-23 13:13:52,087 [pN:main.1,p:74853,tN:Thread-2] Loaded job runner 'galaxy.jobs.runners.local:LocalJobRunner' as 'local' +galaxy.jobs.handler DEBUG 2024-02-23 13:13:52,088 [pN:main.1,p:74853,tN:Thread-2] Loaded job runners plugins: local +galaxy.jobs.runners DEBUG 2024-02-23 13:13:52,089 [pN:main.1,p:74853,tN:Thread-2] Starting 4 LocalRunner workers +galaxy.jobs.handler DEBUG 2024-02-23 13:13:52,105 [pN:main.1,p:74853,tN:Thread-2] Handler queue starting for jobs assigned to handler: main.1 +galaxy.jobs.handler INFO 2024-02-23 13:13:52,130 [pN:main.1,p:74853,tN:JobHandlerQueue.monitor_thread] Handler job grabber initialized with 'HANDLER_ASSIGNMENT_METHODS.DB_SKIP_LOCKED' assignment method for handler 'main.1', tag(s): +galaxy.jobs.handler INFO 2024-02-23 13:13:52,130 [pN:main.1,p:74853,tN:Thread-2] job handler queue started +galaxy.jobs.handler INFO 2024-02-23 13:13:52,135 [pN:main.1,p:74853,tN:Thread-2] job handler stop queue started +galaxy.jobs.handler INFO 2024-02-23 13:13:52,138 [pN:main.1,p:74853,tN:WorkflowRequestMonitor.monitor_thread] Handler job grabber initialized with 'HANDLER_ASSIGNMENT_METHODS.DB_SKIP_LOCKED' assignment method for handler 'main.1', tag(s): None, _default_ +galaxy.queue_worker INFO 2024-02-23 13:13:52,143 [pN:main.1,p:74853,tN:Thread-2] Binding and starting galaxy control worker for main.1 +galaxy.queue_worker DEBUG 2024-02-23 13:13:52,158 [pN:main.1,p:74853,tN:Thread-2] Executing toolbox reload on 'main.1' +galaxy.util WARNING 2024-02-23 13:13:52,165 [pN:main.1,p:74853,tN:Thread-2] directory not found: /scratch/rico/galaxy/lib/galaxy/util/../../../config/plugins/activities +galaxy.tools WARNING 2024-02-23 13:13:52,166 [pN:main.1,p:74853,tN:Thread-2] The default shed tool config file (/tmp/tmpj6ure7bs/shed_tool_conf.xml) has been added to the tool_config_file option, if this is not the desired behavior, please set shed_tool_config_file to your primary shed-enabled tool config file +galaxy.tool_util.toolbox.base INFO 2024-02-23 13:13:52,166 [pN:main.1,p:74853,tN:Thread-2] Parsing the tool configuration /tmp/tmpj6ure7bs/tool_conf.xml +galaxy.tool_util.toolbox.base DEBUG 2024-02-23 13:13:52,166 [pN:main.1,p:74853,tN:Thread-2] Tool path for tool configuration /tmp/tmpj6ure7bs/tool_conf.xml is None +galaxy.tools WARNING 2024-02-23 13:13:52,167 [pN:main.1,p:74853,tN:Thread-2] The default shed tool config file (/tmp/tmpj6ure7bs/shed_tool_conf.xml) has been added to the tool_config_file option, if this is not the desired behavior, please set shed_tool_config_file to your primary shed-enabled tool config file +galaxy.tool_util.toolbox.base INFO 2024-02-23 13:13:52,167 [pN:main.1,p:74853,tN:Thread-2] Parsing the tool configuration /tmp/tmpj6ure7bs/shed_tools_conf.xml +galaxy.tool_util.toolbox.base DEBUG 2024-02-23 13:13:52,167 [pN:main.1,p:74853,tN:Thread-2] Tool path for shed tool configuration /tmp/tmpj6ure7bs/shed_tools_conf.xml is /tmp/tmpj6ure7bs/shed_tools +galaxy.tools WARNING 2024-02-23 13:13:52,167 [pN:main.1,p:74853,tN:Thread-2] The default shed tool config file (/tmp/tmpj6ure7bs/shed_tool_conf.xml) has been added to the tool_config_file option, if this is not the desired behavior, please set shed_tool_config_file to your primary shed-enabled tool config file +galaxy.tool_util.toolbox.base INFO 2024-02-23 13:13:52,167 [pN:main.1,p:74853,tN:Thread-2] Parsing the tool configuration /tmp/tmpj6ure7bs/empty_tool_conf.xml +galaxy.tool_util.toolbox.base DEBUG 2024-02-23 13:13:52,168 [pN:main.1,p:74853,tN:Thread-2] Tool path for tool configuration /tmp/tmpj6ure7bs/empty_tool_conf.xml is None +galaxy.tool_util.toolbox.base DEBUG 2024-02-23 13:13:52,168 [pN:main.1,p:74853,tN:Thread-2] Reading tools from config files finished (2.113 ms) +galaxy.tool_util.toolbox.base DEBUG 2024-02-23 13:13:52,168 [pN:main.1,p:74853,tN:Thread-2] Loaded tool id: upload1, version: 1.1.7 into tool panel.. +galaxy.tool_util.toolbox.base DEBUG 2024-02-23 13:13:52,168 [pN:main.1,p:74853,tN:Thread-2] Loading tool panel finished (0.446 ms) +galaxy.tool_util.toolbox.base DEBUG 2024-02-23 13:13:52,173 [pN:main.1,p:74853,tN:Thread-2] Loaded tool id: upload1, version: 1.1.7 into tool panel.. +galaxy.tool_util.toolbox.views.edam DEBUG 2024-02-23 13:13:52,173 [pN:main.1,p:74853,tN:Thread-2] Loading EDAM tool panel finished (4.446 ms) +galaxy.tool_util.toolbox.base DEBUG 2024-02-23 13:13:52,175 [pN:main.1,p:74853,tN:Thread-2] Loaded tool id: upload1, version: 1.1.7 into tool panel.. +galaxy.tool_util.toolbox.views.edam DEBUG 2024-02-23 13:13:52,175 [pN:main.1,p:74853,tN:Thread-2] Loading EDAM tool panel finished (2.077 ms) +galaxy.datatypes.registry DEBUG 2024-02-23 13:13:52,176 [pN:main.1,p:74853,tN:Thread-2] Loaded converter: CONVERTER_uncompressed_to_gz +galaxy.datatypes.registry DEBUG 2024-02-23 13:13:52,176 [pN:main.1,p:74853,tN:Thread-2] Loaded converter: CONVERTER_gz_to_uncompressed +galaxy.datatypes.registry DEBUG 2024-02-23 13:13:52,176 [pN:main.1,p:74853,tN:Thread-2] Loaded converter: CONVERTER_uncompressed_to_gz +galaxy.datatypes.registry DEBUG 2024-02-23 13:13:52,177 [pN:main.1,p:74853,tN:Thread-2] Loaded converter: CONVERTER_gz_to_uncompressed +galaxy.datatypes.registry DEBUG 2024-02-23 13:13:52,177 [pN:main.1,p:74853,tN:Thread-2] Loaded converter: CONVERTER_uncompressed_to_gz +galaxy.datatypes.registry DEBUG 2024-02-23 13:13:52,177 [pN:main.1,p:74853,tN:Thread-2] Loaded converter: CONVERTER_gz_to_uncompressed +galaxy.datatypes.registry DEBUG 2024-02-23 13:13:52,177 [pN:main.1,p:74853,tN:Thread-2] Loaded converter: CONVERTER_Bam_Bai_0 +galaxy.datatypes.registry DEBUG 2024-02-23 13:13:52,177 [pN:main.1,p:74853,tN:Thread-2] Loaded converter: CONVERTER_bam_to_bigwig_0 +galaxy.datatypes.registry DEBUG 2024-02-23 13:13:52,177 [pN:main.1,p:74853,tN:Thread-2] Loaded converter: CONVERTER_bam_to_qname_sorted_bam +galaxy.datatypes.registry DEBUG 2024-02-23 13:13:52,178 [pN:main.1,p:74853,tN:Thread-2] Loaded converter: CONVERTER_bam_to_bigwig_0 +galaxy.datatypes.registry DEBUG 2024-02-23 13:13:52,178 [pN:main.1,p:74853,tN:Thread-2] Loaded converter: CONVERTER_bam_to_coodinate_sorted_bam +galaxy.datatypes.registry DEBUG 2024-02-23 13:13:52,183 [pN:main.1,p:74853,tN:Thread-2] Loaded converter: CONVERTER_bam_to_qname_sorted_bam +galaxy.datatypes.registry DEBUG 2024-02-23 13:13:52,183 [pN:main.1,p:74853,tN:Thread-2] Loaded converter: CONVERTER_cram_to_bam_0 +galaxy.datatypes.registry DEBUG 2024-02-23 13:13:52,183 [pN:main.1,p:74853,tN:Thread-2] Loaded converter: CONVERTER_bed_to_gff_0 +galaxy.datatypes.registry DEBUG 2024-02-23 13:13:52,183 [pN:main.1,p:74853,tN:Thread-2] Loaded converter: CONVERTER_interval_to_bgzip_0 +galaxy.datatypes.registry DEBUG 2024-02-23 13:13:52,184 [pN:main.1,p:74853,tN:Thread-2] Loaded converter: CONVERTER_interval_to_tabix_0 +galaxy.datatypes.registry DEBUG 2024-02-23 13:13:52,184 [pN:main.1,p:74853,tN:Thread-2] Loaded converter: CONVERTER_bed_gff_or_vcf_to_bigwig_0 +galaxy.datatypes.registry DEBUG 2024-02-23 13:13:52,184 [pN:main.1,p:74853,tN:Thread-2] Loaded converter: CONVERTER_bed_to_fli_0 +galaxy.datatypes.registry DEBUG 2024-02-23 13:13:52,185 [pN:main.1,p:74853,tN:Thread-2] Loaded converter: CONVERTER_bedgraph_to_bigwig +galaxy.datatypes.registry DEBUG 2024-02-23 13:13:52,185 [pN:main.1,p:74853,tN:Thread-2] Loaded converter: CONVERTER_len_to_linecount +galaxy.datatypes.registry DEBUG 2024-02-23 13:13:52,185 [pN:main.1,p:74853,tN:Thread-2] Loaded converter: CONVERTER_parquet_to_csv +galaxy.datatypes.registry DEBUG 2024-02-23 13:13:52,186 [pN:main.1,p:74853,tN:Thread-2] Loaded converter: bigwigtowig +galaxy.datatypes.registry DEBUG 2024-02-23 13:13:52,186 [pN:main.1,p:74853,tN:Thread-2] Loaded converter: CONVERTER_interval_to_bgzip_0 +galaxy.datatypes.registry DEBUG 2024-02-23 13:13:52,186 [pN:main.1,p:74853,tN:Thread-2] Loaded converter: CONVERTER_interval_to_tabix_0 +galaxy.datatypes.registry DEBUG 2024-02-23 13:13:52,186 [pN:main.1,p:74853,tN:Thread-2] Loaded converter: CONVERTER_bed_gff_or_vcf_to_bigwig_0 +galaxy.datatypes.registry DEBUG 2024-02-23 13:13:52,187 [pN:main.1,p:74853,tN:Thread-2] Loaded converter: csv_to_tabular +galaxy.datatypes.registry DEBUG 2024-02-23 13:13:52,187 [pN:main.1,p:74853,tN:Thread-2] Loaded converter: tabular_to_csv +galaxy.datatypes.registry DEBUG 2024-02-23 13:13:52,187 [pN:main.1,p:74853,tN:Thread-2] Loaded converter: CONVERTER_fasta_to_tabular +galaxy.datatypes.registry DEBUG 2024-02-23 13:13:52,187 [pN:main.1,p:74853,tN:Thread-2] Loaded converter: CONVERTER_fasta_to_bowtie_base_index +galaxy.datatypes.registry DEBUG 2024-02-23 13:13:52,187 [pN:main.1,p:74853,tN:Thread-2] Loaded converter: CONVERTER_fasta_to_bowtie_color_index +galaxy.datatypes.registry DEBUG 2024-02-23 13:13:52,187 [pN:main.1,p:74853,tN:Thread-2] Loaded converter: CONVERTER_fasta_to_2bit +galaxy.datatypes.registry DEBUG 2024-02-23 13:13:52,187 [pN:main.1,p:74853,tN:Thread-2] Loaded converter: CONVERTER_fasta_to_len +galaxy.datatypes.registry DEBUG 2024-02-23 13:13:52,188 [pN:main.1,p:74853,tN:Thread-2] Loaded converter: CONVERTER_fasta_to_fai +galaxy.datatypes.registry DEBUG 2024-02-23 13:13:52,188 [pN:main.1,p:74853,tN:Thread-2] Loaded converter: CONVERTER_uncompressed_to_gz +galaxy.datatypes.registry DEBUG 2024-02-23 13:13:52,188 [pN:main.1,p:74853,tN:Thread-2] Loaded converter: CONVERTER_gz_to_uncompressed +galaxy.datatypes.registry DEBUG 2024-02-23 13:13:52,188 [pN:main.1,p:74853,tN:Thread-2] Loaded converter: CONVERTER_fastq_to_fqtoc0 +galaxy.datatypes.registry DEBUG 2024-02-23 13:13:52,189 [pN:main.1,p:74853,tN:Thread-2] Loaded converter: CONVERTER_uncompressed_to_gz +galaxy.datatypes.registry DEBUG 2024-02-23 13:13:52,189 [pN:main.1,p:74853,tN:Thread-2] Loaded converter: CONVERTER_gz_to_uncompressed +galaxy.datatypes.registry DEBUG 2024-02-23 13:13:52,189 [pN:main.1,p:74853,tN:Thread-2] Loaded converter: CONVERTER_bz2_to_uncompressed +galaxy.datatypes.registry DEBUG 2024-02-23 13:13:52,189 [pN:main.1,p:74853,tN:Thread-2] Loaded converter: CONVERTER_fastq_to_fqtoc0 +galaxy.datatypes.registry DEBUG 2024-02-23 13:13:52,189 [pN:main.1,p:74853,tN:Thread-2] Loaded converter: CONVERTER_uncompressed_to_gz +galaxy.datatypes.registry DEBUG 2024-02-23 13:13:52,189 [pN:main.1,p:74853,tN:Thread-2] Loaded converter: CONVERTER_gz_to_uncompressed +galaxy.datatypes.registry DEBUG 2024-02-23 13:13:52,190 [pN:main.1,p:74853,tN:Thread-2] Loaded converter: CONVERTER_bz2_to_uncompressed +galaxy.datatypes.registry DEBUG 2024-02-23 13:13:52,190 [pN:main.1,p:74853,tN:Thread-2] Loaded converter: CONVERTER_fastq_to_fqtoc0 +galaxy.datatypes.registry DEBUG 2024-02-23 13:13:52,190 [pN:main.1,p:74853,tN:Thread-2] Loaded converter: CONVERTER_uncompressed_to_gz +galaxy.datatypes.registry DEBUG 2024-02-23 13:13:52,190 [pN:main.1,p:74853,tN:Thread-2] Loaded converter: CONVERTER_gz_to_uncompressed +galaxy.datatypes.registry DEBUG 2024-02-23 13:13:52,190 [pN:main.1,p:74853,tN:Thread-2] Loaded converter: CONVERTER_bz2_to_uncompressed +galaxy.datatypes.registry DEBUG 2024-02-23 13:13:52,190 [pN:main.1,p:74853,tN:Thread-2] Loaded converter: CONVERTER_fastq_to_fqtoc0 +galaxy.datatypes.registry DEBUG 2024-02-23 13:13:52,191 [pN:main.1,p:74853,tN:Thread-2] Loaded converter: CONVERTER_uncompressed_to_gz +galaxy.datatypes.registry DEBUG 2024-02-23 13:13:52,191 [pN:main.1,p:74853,tN:Thread-2] Loaded converter: CONVERTER_gz_to_uncompressed +galaxy.datatypes.registry DEBUG 2024-02-23 13:13:52,191 [pN:main.1,p:74853,tN:Thread-2] Loaded converter: CONVERTER_bz2_to_uncompressed +galaxy.datatypes.registry DEBUG 2024-02-23 13:13:52,191 [pN:main.1,p:74853,tN:Thread-2] Loaded converter: CONVERTER_fastq_to_fqtoc0 +galaxy.datatypes.registry DEBUG 2024-02-23 13:13:52,192 [pN:main.1,p:74853,tN:Thread-2] Loaded converter: CONVERTER_uncompressed_to_gz +galaxy.datatypes.registry DEBUG 2024-02-23 13:13:52,192 [pN:main.1,p:74853,tN:Thread-2] Loaded converter: CONVERTER_gz_to_uncompressed +galaxy.datatypes.registry DEBUG 2024-02-23 13:13:52,192 [pN:main.1,p:74853,tN:Thread-2] Loaded converter: CONVERTER_bz2_to_uncompressed +galaxy.datatypes.registry DEBUG 2024-02-23 13:13:52,192 [pN:main.1,p:74853,tN:Thread-2] Loaded converter: CONVERTER_gff_to_bed_0 +galaxy.datatypes.registry DEBUG 2024-02-23 13:13:52,192 [pN:main.1,p:74853,tN:Thread-2] Loaded converter: CONVERTER_gff_to_interval_index_0 +galaxy.datatypes.registry DEBUG 2024-02-23 13:13:52,193 [pN:main.1,p:74853,tN:Thread-2] Loaded converter: CONVERTER_bed_gff_or_vcf_to_bigwig_0 +galaxy.datatypes.registry DEBUG 2024-02-23 13:13:52,193 [pN:main.1,p:74853,tN:Thread-2] Loaded converter: CONVERTER_gff_to_fli_0 +galaxy.datatypes.registry DEBUG 2024-02-23 13:13:52,193 [pN:main.1,p:74853,tN:Thread-2] Loaded converter: CONVERTER_interval_to_bgzip_0 +galaxy.datatypes.registry DEBUG 2024-02-23 13:13:52,193 [pN:main.1,p:74853,tN:Thread-2] Loaded converter: CONVERTER_interval_to_tabix_0 +galaxy.datatypes.registry DEBUG 2024-02-23 13:13:52,193 [pN:main.1,p:74853,tN:Thread-2] Loaded converter: CONVERTER_uncompressed_to_gz +galaxy.datatypes.registry DEBUG 2024-02-23 13:13:52,194 [pN:main.1,p:74853,tN:Thread-2] Loaded converter: CONVERTER_gz_to_uncompressed +galaxy.datatypes.registry DEBUG 2024-02-23 13:13:52,194 [pN:main.1,p:74853,tN:Thread-2] Loaded converter: CONVERTER_bz2_to_uncompressed +galaxy.datatypes.registry DEBUG 2024-02-23 13:13:52,194 [pN:main.1,p:74853,tN:Thread-2] Loaded converter: CONVERTER_gff_to_interval_index_0 +galaxy.datatypes.registry DEBUG 2024-02-23 13:13:52,194 [pN:main.1,p:74853,tN:Thread-2] Loaded converter: CONVERTER_bed_gff_or_vcf_to_bigwig_0 +galaxy.datatypes.registry DEBUG 2024-02-23 13:13:52,194 [pN:main.1,p:74853,tN:Thread-2] Loaded converter: CONVERTER_interval_to_bed_0 +galaxy.datatypes.registry DEBUG 2024-02-23 13:13:52,195 [pN:main.1,p:74853,tN:Thread-2] Loaded converter: CONVERTER_interval_to_bedstrict_0 +galaxy.datatypes.registry DEBUG 2024-02-23 13:13:52,195 [pN:main.1,p:74853,tN:Thread-2] Loaded converter: CONVERTER_interval_to_bed6_0 +galaxy.datatypes.registry DEBUG 2024-02-23 13:13:52,195 [pN:main.1,p:74853,tN:Thread-2] Loaded converter: CONVERTER_interval_to_bed12_0 +galaxy.datatypes.registry DEBUG 2024-02-23 13:13:52,195 [pN:main.1,p:74853,tN:Thread-2] Loaded converter: CONVERTER_interval_to_bgzip_0 +galaxy.datatypes.registry DEBUG 2024-02-23 13:13:52,196 [pN:main.1,p:74853,tN:Thread-2] Loaded converter: CONVERTER_interval_to_tabix_0 +galaxy.datatypes.registry DEBUG 2024-02-23 13:13:52,196 [pN:main.1,p:74853,tN:Thread-2] Loaded converter: CONVERTER_interval_to_bigwig_0 +galaxy.datatypes.registry DEBUG 2024-02-23 13:13:52,196 [pN:main.1,p:74853,tN:Thread-2] Loaded converter: CONVERTER_picard_interval_list_to_bed6 +galaxy.datatypes.registry DEBUG 2024-02-23 13:13:52,196 [pN:main.1,p:74853,tN:Thread-2] Loaded converter: CONVERTER_tar_to_directory +galaxy.datatypes.registry DEBUG 2024-02-23 13:13:52,196 [pN:main.1,p:74853,tN:Thread-2] Loaded converter: CONVERTER_uncompressed_to_gz +galaxy.datatypes.registry DEBUG 2024-02-23 13:13:52,197 [pN:main.1,p:74853,tN:Thread-2] Loaded converter: CONVERTER_gz_to_uncompressed +galaxy.datatypes.registry DEBUG 2024-02-23 13:13:52,197 [pN:main.1,p:74853,tN:Thread-2] Loaded converter: CONVERTER_uncompressed_to_gz +galaxy.datatypes.registry DEBUG 2024-02-23 13:13:52,197 [pN:main.1,p:74853,tN:Thread-2] Loaded converter: CONVERTER_gz_to_uncompressed +galaxy.datatypes.registry DEBUG 2024-02-23 13:13:52,197 [pN:main.1,p:74853,tN:Thread-2] Loaded converter: CONVERTER_uncompressed_to_gz +galaxy.datatypes.registry DEBUG 2024-02-23 13:13:52,197 [pN:main.1,p:74853,tN:Thread-2] Loaded converter: CONVERTER_gz_to_uncompressed +galaxy.datatypes.registry DEBUG 2024-02-23 13:13:52,197 [pN:main.1,p:74853,tN:Thread-2] Loaded converter: CONVERTER_maf_to_fasta_0 +galaxy.datatypes.registry DEBUG 2024-02-23 13:13:52,198 [pN:main.1,p:74853,tN:Thread-2] Loaded converter: CONVERTER_maf_to_interval_0 +galaxy.datatypes.registry DEBUG 2024-02-23 13:13:52,198 [pN:main.1,p:74853,tN:Thread-2] Loaded converter: CONVERTER_interval_to_tabix_0 +galaxy.datatypes.registry DEBUG 2024-02-23 13:13:52,198 [pN:main.1,p:74853,tN:Thread-2] Loaded converter: CONVERTER_interval_to_bgzip_0 +galaxy.datatypes.registry DEBUG 2024-02-23 13:13:52,198 [pN:main.1,p:74853,tN:Thread-2] Loaded converter: CONVERTER_bed_gff_or_vcf_to_bigwig_0 +galaxy.datatypes.registry DEBUG 2024-02-23 13:13:52,198 [pN:main.1,p:74853,tN:Thread-2] Loaded converter: CONVERTER_interval_to_bgzip_0 +galaxy.datatypes.registry DEBUG 2024-02-23 13:13:52,199 [pN:main.1,p:74853,tN:Thread-2] Loaded converter: CONVERTER_interval_to_tabix_0 +galaxy.datatypes.registry DEBUG 2024-02-23 13:13:52,199 [pN:main.1,p:74853,tN:Thread-2] Loaded converter: CONVERTER_sam_to_unsorted_bam +galaxy.datatypes.registry DEBUG 2024-02-23 13:13:52,199 [pN:main.1,p:74853,tN:Thread-2] Loaded converter: CONVERTER_bam_to_coodinate_sorted_bam +galaxy.datatypes.registry DEBUG 2024-02-23 13:13:52,200 [pN:main.1,p:74853,tN:Thread-2] Loaded converter: CONVERTER_bam_to_qname_sorted_bam +galaxy.datatypes.registry DEBUG 2024-02-23 13:13:52,200 [pN:main.1,p:74853,tN:Thread-2] Loaded converter: CONVERTER_sam_to_bigwig_0 +galaxy.datatypes.registry DEBUG 2024-02-23 13:13:52,200 [pN:main.1,p:74853,tN:Thread-2] Loaded converter: tabular_to_dbnsfp +galaxy.datatypes.registry DEBUG 2024-02-23 13:13:52,200 [pN:main.1,p:74853,tN:Thread-2] Loaded converter: tabular_to_csv +galaxy.datatypes.registry DEBUG 2024-02-23 13:13:52,200 [pN:main.1,p:74853,tN:Thread-2] Loaded converter: CONVERTER_uncompressed_to_gz +galaxy.datatypes.registry DEBUG 2024-02-23 13:13:52,200 [pN:main.1,p:74853,tN:Thread-2] Loaded converter: CONVERTER_gz_to_uncompressed +galaxy.datatypes.registry DEBUG 2024-02-23 13:13:52,201 [pN:main.1,p:74853,tN:Thread-2] Loaded converter: CONVERTER_interval_to_bgzip_0 +galaxy.datatypes.registry DEBUG 2024-02-23 13:13:52,201 [pN:main.1,p:74853,tN:Thread-2] Loaded converter: CONVERTER_vcf_to_vcf_bgzip_0 +galaxy.datatypes.registry DEBUG 2024-02-23 13:13:52,201 [pN:main.1,p:74853,tN:Thread-2] Loaded converter: CONVERTER_interval_to_tabix_0 +galaxy.datatypes.registry DEBUG 2024-02-23 13:13:52,201 [pN:main.1,p:74853,tN:Thread-2] Loaded converter: CONVERTER_bed_gff_or_vcf_to_bigwig_0 +galaxy.datatypes.registry DEBUG 2024-02-23 13:13:52,201 [pN:main.1,p:74853,tN:Thread-2] Loaded converter: CONVERTER_uncompressed_to_gz +galaxy.datatypes.registry DEBUG 2024-02-23 13:13:52,201 [pN:main.1,p:74853,tN:Thread-2] Loaded converter: CONVERTER_bcf_uncompressed_to_bcf +galaxy.datatypes.registry DEBUG 2024-02-23 13:13:52,202 [pN:main.1,p:74853,tN:Thread-2] Loaded converter: CONVERTER_bcf_uncompressed_to_bcf +galaxy.datatypes.registry DEBUG 2024-02-23 13:13:52,202 [pN:main.1,p:74853,tN:Thread-2] Loaded converter: CONVERTER_wig_to_bigwig +galaxy.datatypes.registry DEBUG 2024-02-23 13:13:52,202 [pN:main.1,p:74853,tN:Thread-2] Loaded converter: CONVERTER_wiggle_to_interval_0 +galaxy.datatypes.registry DEBUG 2024-02-23 13:13:52,202 [pN:main.1,p:74853,tN:Thread-2] Loaded converter: CONVERTER_vcf_bgzip_to_tabix_0 +galaxy.datatypes.registry DEBUG 2024-02-23 13:13:52,203 [pN:main.1,p:74853,tN:Thread-2] Loaded converter: CONVERTER_gz_to_uncompressed +galaxy.datatypes.registry DEBUG 2024-02-23 13:13:52,203 [pN:main.1,p:74853,tN:Thread-2] Loaded converter: lped2fpedconvert +galaxy.datatypes.registry DEBUG 2024-02-23 13:13:52,203 [pN:main.1,p:74853,tN:Thread-2] Loaded converter: lped2pbedconvert +galaxy.datatypes.registry DEBUG 2024-02-23 13:13:52,203 [pN:main.1,p:74853,tN:Thread-2] Loaded converter: pbed2lpedconvert +galaxy.datatypes.registry DEBUG 2024-02-23 13:13:52,204 [pN:main.1,p:74853,tN:Thread-2] Loaded converter: pbed2ldindepconvert +galaxy.datatypes.registry DEBUG 2024-02-23 13:13:52,204 [pN:main.1,p:74853,tN:Thread-2] Loaded converter: CONVERTER_uncompressed_to_gz +galaxy.datatypes.registry DEBUG 2024-02-23 13:13:52,204 [pN:main.1,p:74853,tN:Thread-2] Loaded converter: CONVERTER_gz_to_uncompressed +galaxy.datatypes.registry DEBUG 2024-02-23 13:13:52,204 [pN:main.1,p:74853,tN:Thread-2] Loaded converter: CONVERTER_biom +galaxy.datatypes.registry DEBUG 2024-02-23 13:13:52,205 [pN:main.1,p:74853,tN:Thread-2] Loaded converter: CONVERTER_biom +galaxy.datatypes.registry DEBUG 2024-02-23 13:13:52,205 [pN:main.1,p:74853,tN:Thread-2] Loaded converter: CONVERTER_molecules +galaxy.datatypes.registry DEBUG 2024-02-23 13:13:52,205 [pN:main.1,p:74853,tN:Thread-2] Loaded converter: CONVERTER_molecules +galaxy.datatypes.registry DEBUG 2024-02-23 13:13:52,206 [pN:main.1,p:74853,tN:Thread-2] Loaded converter: CONVERTER_molecules +galaxy.datatypes.registry DEBUG 2024-02-23 13:13:52,206 [pN:main.1,p:74853,tN:Thread-2] Loaded converter: CONVERTER_SMILES_to_MOL +galaxy.datatypes.registry DEBUG 2024-02-23 13:13:52,206 [pN:main.1,p:74853,tN:Thread-2] Loaded converter: CONVERTER_molecules +galaxy.datatypes.registry DEBUG 2024-02-23 13:13:52,206 [pN:main.1,p:74853,tN:Thread-2] Loaded converter: CONVERTER_smiles_to_smiles +galaxy.datatypes.registry DEBUG 2024-02-23 13:13:52,206 [pN:main.1,p:74853,tN:Thread-2] Loaded converter: CONVERTER_molecules +galaxy.datatypes.registry DEBUG 2024-02-23 13:13:52,207 [pN:main.1,p:74853,tN:Thread-2] Loaded converter: CONVERTER_molecules +galaxy.datatypes.registry DEBUG 2024-02-23 13:13:52,207 [pN:main.1,p:74853,tN:Thread-2] Loaded converter: CONVERTER_molecules +galaxy.datatypes.registry DEBUG 2024-02-23 13:13:52,207 [pN:main.1,p:74853,tN:Thread-2] Loaded converter: CONVERTER_molecules +galaxy.datatypes.registry DEBUG 2024-02-23 13:13:52,207 [pN:main.1,p:74853,tN:Thread-2] Loaded converter: CONVERTER_molecules +galaxy.datatypes.registry DEBUG 2024-02-23 13:13:52,207 [pN:main.1,p:74853,tN:Thread-2] Loaded converter: CONVERTER_molecules +galaxy.datatypes.registry DEBUG 2024-02-23 13:13:52,208 [pN:main.1,p:74853,tN:Thread-2] Loaded converter: CONVERTER_inchi_to_mol +galaxy.datatypes.registry DEBUG 2024-02-23 13:13:52,208 [pN:main.1,p:74853,tN:Thread-2] Loaded converter: CONVERTER_molecules +galaxy.datatypes.registry DEBUG 2024-02-23 13:13:52,208 [pN:main.1,p:74853,tN:Thread-2] Loaded converter: CONVERTER_molecules +galaxy.datatypes.registry DEBUG 2024-02-23 13:13:52,208 [pN:main.1,p:74853,tN:Thread-2] Loaded converter: CONVERTER_molecules +galaxy.datatypes.registry DEBUG 2024-02-23 13:13:52,208 [pN:main.1,p:74853,tN:Thread-2] Loaded converter: CONVERTER_molecules +galaxy.datatypes.registry DEBUG 2024-02-23 13:13:52,209 [pN:main.1,p:74853,tN:Thread-2] Loaded converter: CONVERTER_molecules +galaxy.datatypes.registry DEBUG 2024-02-23 13:13:52,209 [pN:main.1,p:74853,tN:Thread-2] Loaded converter: CONVERTER_molecules +galaxy.datatypes.registry DEBUG 2024-02-23 13:13:52,209 [pN:main.1,p:74853,tN:Thread-2] Loaded converter: CONVERTER_molecules +galaxy.datatypes.registry DEBUG 2024-02-23 13:13:52,209 [pN:main.1,p:74853,tN:Thread-2] Loaded converter: CONVERTER_molecules +galaxy.datatypes.registry DEBUG 2024-02-23 13:13:52,209 [pN:main.1,p:74853,tN:Thread-2] Loaded converter: CONVERTER_molecules +galaxy.datatypes.registry DEBUG 2024-02-23 13:13:52,210 [pN:main.1,p:74853,tN:Thread-2] Loaded converter: CONVERTER_molecules +galaxy.datatypes.registry DEBUG 2024-02-23 13:13:52,210 [pN:main.1,p:74853,tN:Thread-2] Loaded converter: CONVERTER_mol2_to_mol +galaxy.datatypes.registry DEBUG 2024-02-23 13:13:52,210 [pN:main.1,p:74853,tN:Thread-2] Loaded converter: CONVERTER_molecules +galaxy.datatypes.registry DEBUG 2024-02-23 13:13:52,210 [pN:main.1,p:74853,tN:Thread-2] Loaded converter: CONVERTER_cml_to_smiles +galaxy.datatypes.registry DEBUG 2024-02-23 13:13:52,210 [pN:main.1,p:74853,tN:Thread-2] Loaded converter: CONVERTER_molecules +galaxy.datatypes.registry DEBUG 2024-02-23 13:13:52,210 [pN:main.1,p:74853,tN:Thread-2] Loaded converter: CONVERTER_molecules +galaxy.datatypes.registry DEBUG 2024-02-23 13:13:52,211 [pN:main.1,p:74853,tN:Thread-2] Loaded converter: CONVERTER_molecules +galaxy.datatypes.registry DEBUG 2024-02-23 13:13:52,211 [pN:main.1,p:74853,tN:Thread-2] Loaded converter: CONVERTER_Pdb_to_Gro_0 +galaxy.datatypes.registry DEBUG 2024-02-23 13:13:52,211 [pN:main.1,p:74853,tN:Thread-2] Loaded converter: CONVERTER_mdconvert +galaxy.datatypes.registry DEBUG 2024-02-23 13:13:52,212 [pN:main.1,p:74853,tN:Thread-2] Loaded converter: CONVERTER_mdconvert +galaxy.datatypes.registry DEBUG 2024-02-23 13:13:52,212 [pN:main.1,p:74853,tN:Thread-2] Loaded converter: CONVERTER_mdconvert +galaxy.datatypes.registry DEBUG 2024-02-23 13:13:52,212 [pN:main.1,p:74853,tN:Thread-2] Loaded converter: CONVERTER_mdconvert +galaxy.datatypes.registry DEBUG 2024-02-23 13:13:52,213 [pN:main.1,p:74853,tN:Thread-2] Loaded converter: CONVERTER_mdconvert +galaxy.datatypes.registry DEBUG 2024-02-23 13:13:52,213 [pN:main.1,p:74853,tN:Thread-2] Loaded converter: CONVERTER_mdconvert +galaxy.datatypes.registry DEBUG 2024-02-23 13:13:52,214 [pN:main.1,p:74853,tN:Thread-2] Loaded converter: CONVERTER_Gro_to_Pdb_0 +galaxy.datatypes.registry DEBUG 2024-02-23 13:13:52,214 [pN:main.1,p:74853,tN:Thread-2] Loaded converter: CONVERTER_ref_to_seq_taxomony +galaxy.datatypes.registry DEBUG 2024-02-23 13:13:52,214 [pN:main.1,p:74853,tN:Thread-2] Loaded converter: CONVERTER_neostorezip_to_neostore +galaxy.datatypes.registry DEBUG 2024-02-23 13:13:52,240 [pN:main.1,p:74853,tN:Thread-2] Loaded external metadata tool: __SET_METADATA__ +galaxy.tools.special_tools DEBUG 2024-02-23 13:13:52,253 [pN:main.1,p:74853,tN:Thread-2] Loaded history export tool: __EXPORT_HISTORY__ +galaxy.tools.special_tools DEBUG 2024-02-23 13:13:52,265 [pN:main.1,p:74853,tN:Thread-2] Loaded history export to uri tool: __EXPORT_HISTORY_TO_URI__ +galaxy.tools.special_tools DEBUG 2024-02-23 13:13:52,275 [pN:main.1,p:74853,tN:Thread-2] Loaded history import tool: __IMPORT_HISTORY__ +galaxy.tools.special_tools DEBUG 2024-02-23 13:13:52,304 [pN:main.1,p:74853,tN:Thread-2] Loaded data fetch tool: __DATA_FETCH__ +galaxy.model.database_heartbeat DEBUG 2024-02-23 13:13:52,304 [pN:main.1,p:74853,tN:database_heartbeart_main.1.thread] main.1 is config watcher +galaxy.queue_worker INFO 2024-02-23 13:13:52,305 [pN:main.1,p:74853,tN:Thread-2] Queuing async task rebuild_toolbox_search_index for main.1. +galaxy.queue_worker DEBUG 2024-02-23 13:13:52,333 [pN:main.1,p:74853,tN:Thread-2] Toolbox reload (175.370 ms) +galaxy.queue_worker INFO 2024-02-23 13:13:52,333 [pN:main.1,p:74853,tN:Thread-2] Queuing async task rebuild_toolbox_search_index for main.1. +galaxy.queue_worker INFO 2024-02-23 13:13:52,346 [pN:main.1,p:74853,tN:Thread-1] Instance 'main.1' received 'rebuild_toolbox_search_index' task, executing now. +galaxy.tools.search DEBUG 2024-02-23 13:13:52,346 [pN:main.1,p:74853,tN:Thread-1] Starting to build toolbox index of panel default. +galaxy.web_stack INFO 2024-02-23 13:13:52,356 [pN:main.1,p:74853,tN:Thread-2] Galaxy server instance 'main.1' is running +[92m +Serving on http://127.0.0.1:45523 +[0m +galaxy.tools.search DEBUG 2024-02-23 13:13:52,358 [pN:main.1,p:74853,tN:Thread-1] Toolbox index of panel default finished (11.396 ms) +galaxy.tools.search DEBUG 2024-02-23 13:13:52,358 [pN:main.1,p:74853,tN:Thread-1] Starting to build toolbox index of panel ontology:edam_operations. +galaxy.tools.search DEBUG 2024-02-23 13:13:52,362 [pN:main.1,p:74853,tN:Thread-1] Toolbox index of panel ontology:edam_operations finished (4.037 ms) +galaxy.tools.search DEBUG 2024-02-23 13:13:52,363 [pN:main.1,p:74853,tN:Thread-1] Starting to build toolbox index of panel ontology:edam_topics. +galaxy.tools.search DEBUG 2024-02-23 13:13:52,366 [pN:main.1,p:74853,tN:Thread-1] Toolbox index of panel ontology:edam_topics finished (3.603 ms) +galaxy.queue_worker INFO 2024-02-23 13:13:52,375 [pN:main.1,p:74853,tN:Thread-1] Instance 'main.1' received 'rebuild_toolbox_search_index' task, executing now. +galaxy.tools.search DEBUG 2024-02-23 13:13:52,375 [pN:main.1,p:74853,tN:Thread-1] Starting to build toolbox index of panel default. +galaxy.tools.search DEBUG 2024-02-23 13:13:52,378 [pN:main.1,p:74853,tN:Thread-1] Toolbox index of panel default finished (3.323 ms) +galaxy.tools.search DEBUG 2024-02-23 13:13:52,379 [pN:main.1,p:74853,tN:Thread-1] Starting to build toolbox index of panel ontology:edam_operations. +galaxy.tools.search DEBUG 2024-02-23 13:13:52,382 [pN:main.1,p:74853,tN:Thread-1] Toolbox index of panel ontology:edam_operations finished (3.145 ms) +galaxy.tools.search DEBUG 2024-02-23 13:13:52,382 [pN:main.1,p:74853,tN:Thread-1] Starting to build toolbox index of panel ontology:edam_topics. +galaxy.tools.search DEBUG 2024-02-23 13:13:52,385 [pN:main.1,p:74853,tN:Thread-1] Toolbox index of panel ontology:edam_topics finished (3.148 ms) +multipart.multipart DEBUG 2024-02-23 13:13:53,181 [pN:main.1,p:74853,tN:MainThread] Calling on_field_start with no data +multipart.multipart DEBUG 2024-02-23 13:13:53,181 [pN:main.1,p:74853,tN:MainThread] Calling on_field_name with data[0:4] +multipart.multipart DEBUG 2024-02-23 13:13:53,182 [pN:main.1,p:74853,tN:MainThread] Calling on_field_data with data[5:63] +multipart.multipart DEBUG 2024-02-23 13:13:53,182 [pN:main.1,p:74853,tN:MainThread] Calling on_field_end with no data +multipart.multipart DEBUG 2024-02-23 13:13:53,182 [pN:main.1,p:74853,tN:MainThread] Calling on_end with no data +galaxy.tools INFO 2024-02-23 13:13:53,372 [pN:main.1,p:74853,tN:WSGI_3] Validated and populated state for tool request (12.245 ms) +galaxy.tools.actions.upload DEBUG 2024-02-23 13:13:53,378 [pN:main.1,p:74853,tN:WSGI_3] Persisted uploads (0.124 ms) +galaxy.tools.actions.upload DEBUG 2024-02-23 13:13:53,486 [pN:main.1,p:74853,tN:WSGI_3] Checked uploads (107.703 ms) +galaxy.tools.actions.upload DEBUG 2024-02-23 13:13:53,490 [pN:main.1,p:74853,tN:WSGI_3] Created upload job (3.579 ms) +galaxy.tools.execute DEBUG 2024-02-23 13:13:53,490 [pN:main.1,p:74853,tN:WSGI_3] Tool upload1 created job None (112.119 ms) +galaxy.web_stack.handlers INFO 2024-02-23 13:13:53,513 [pN:main.1,p:74853,tN:WSGI_3] (Job[id=1,tool_id=upload1]) Handler '_default_' assigned using 'HANDLER_ASSIGNMENT_METHODS.DB_SKIP_LOCKED' assignment method +galaxy.tools.execute DEBUG 2024-02-23 13:13:53,518 [pN:main.1,p:74853,tN:WSGI_3] Created 1 job(s) for tool upload1 request (145.749 ms) +galaxy.jobs.mapper DEBUG 2024-02-23 13:13:54,375 [pN:main.1,p:74853,tN:JobHandlerQueue.monitor_thread] (1) Mapped job to destination id: docker_local +galaxy.jobs.handler DEBUG 2024-02-23 13:13:54,379 [pN:main.1,p:74853,tN:JobHandlerQueue.monitor_thread] (1) Dispatching to local runner +galaxy.jobs DEBUG 2024-02-23 13:13:54,387 [pN:main.1,p:74853,tN:JobHandlerQueue.monitor_thread] (1) Persisting job destination (destination id: docker_local) +galaxy.jobs DEBUG 2024-02-23 13:13:54,394 [pN:main.1,p:74853,tN:JobHandlerQueue.monitor_thread] (1) Working directory for job is: /tmp/tmpj6ure7bs/job_working_directory/000/1 +galaxy.jobs.runners DEBUG 2024-02-23 13:13:54,399 [pN:main.1,p:74853,tN:JobHandlerQueue.monitor_thread] Job [1] queued (19.134 ms) +galaxy.jobs.handler INFO 2024-02-23 13:13:54,409 [pN:main.1,p:74853,tN:JobHandlerQueue.monitor_thread] (1) Job dispatched +galaxy.jobs DEBUG 2024-02-23 13:13:54,559 [pN:main.1,p:74853,tN:LocalRunner.work_thread-0] Job wrapper for Job [1] prepared (143.512 ms) +galaxy.tool_util.deps.containers INFO 2024-02-23 13:13:54,560 [pN:main.1,p:74853,tN:LocalRunner.work_thread-0] Checking with container resolver [ExplicitContainerResolver[]] found description [None] +galaxy.tool_util.deps.containers INFO 2024-02-23 13:13:54,560 [pN:main.1,p:74853,tN:LocalRunner.work_thread-0] Checking with container resolver [CachedMulledDockerContainerResolver[namespace=biocontainers]] found description [None] +galaxy.tool_util.deps.containers INFO 2024-02-23 13:13:54,560 [pN:main.1,p:74853,tN:LocalRunner.work_thread-0] Checking with container resolver [CachedMulledDockerContainerResolver[namespace=local]] found description [None] +galaxy.tool_util.deps.containers INFO 2024-02-23 13:13:54,560 [pN:main.1,p:74853,tN:LocalRunner.work_thread-0] Checking with container resolver [MulledDockerContainerResolver[namespace=biocontainers]] found description [None] +galaxy.tool_util.deps.containers INFO 2024-02-23 13:13:54,560 [pN:main.1,p:74853,tN:LocalRunner.work_thread-0] Checking with container resolver [BuildDockerContainerResolver[namespace=local]] found description [None] +galaxy.jobs.command_factory INFO 2024-02-23 13:13:54,591 [pN:main.1,p:74853,tN:LocalRunner.work_thread-0] Built script [/tmp/tmpj6ure7bs/job_working_directory/000/1/tool_script.sh] for tool command [python '/scratch/rico/galaxy/tools/data_source/upload.py' '/scratch/rico/galaxy' '/tmp/tmpj6ure7bs/job_working_directory/000/1/registry.xml' '/tmp/tmpj6ure7bs/job_working_directory/000/1/upload_params.json' '1:/tmp/tmpj6ure7bs/job_working_directory/000/1/outputs/dataset_303483b7-51f2-45b2-8279-f59f17d38a4c_files:/tmp/tmpj6ure7bs/job_working_directory/000/1/outputs/dataset_303483b7-51f2-45b2-8279-f59f17d38a4c.dat'] +galaxy.jobs.runners DEBUG 2024-02-23 13:13:54,641 [pN:main.1,p:74853,tN:LocalRunner.work_thread-0] (1) command is: mkdir -p working outputs configs +if [ -d _working ]; then + rm -rf working/ outputs/ configs/; cp -R _working working; cp -R _outputs outputs; cp -R _configs configs +else + cp -R working _working; cp -R outputs _outputs; cp -R configs _configs +fi +cd working; /bin/bash /tmp/tmpj6ure7bs/job_working_directory/000/1/tool_script.sh > '../outputs/tool_stdout' 2> '../outputs/tool_stderr'; return_code=$?; echo $return_code > /tmp/tmpj6ure7bs/job_working_directory/000/1/galaxy_1.ec; cd '/tmp/tmpj6ure7bs/job_working_directory/000/1'; +[ "$GALAXY_VIRTUAL_ENV" = "None" ] && GALAXY_VIRTUAL_ENV="$_GALAXY_VIRTUAL_ENV"; _galaxy_setup_environment True; python metadata/set.py; sh -c "exit $return_code" +galaxy.jobs.runners.local DEBUG 2024-02-23 13:13:54,664 [pN:main.1,p:74853,tN:LocalRunner.work_thread-0] (1) executing job script: /tmp/tmpj6ure7bs/job_working_directory/000/1/galaxy_1.sh +galaxy.jobs.runners.util.process_groups DEBUG 2024-02-23 13:14:01,259 [pN:main.1,p:74853,tN:LocalRunner.work_thread-0] check_pg(): No process found in process group 74876 +galaxy.jobs.runners.local DEBUG 2024-02-23 13:14:01,260 [pN:main.1,p:74853,tN:LocalRunner.work_thread-0] execution finished: /tmp/tmpj6ure7bs/job_working_directory/000/1/galaxy_1.sh +galaxy.jobs DEBUG 2024-02-23 13:14:01,284 [pN:main.1,p:74853,tN:LocalRunner.work_thread-0] finish(): Moved /tmp/tmpj6ure7bs/job_working_directory/000/1/outputs/dataset_303483b7-51f2-45b2-8279-f59f17d38a4c.dat to /tmp/tmpj6ure7bs/files/3/0/3/dataset_303483b7-51f2-45b2-8279-f59f17d38a4c.dat +galaxy.model.metadata DEBUG 2024-02-23 13:14:01,294 [pN:main.1,p:74853,tN:LocalRunner.work_thread-0] loading metadata from file for: HistoryDatasetAssociation 1 +galaxy.jobs DEBUG 2024-02-23 13:14:01,328 [pN:main.1,p:74853,tN:LocalRunner.work_thread-0] job_wrapper.finish for job 1 executed (49.786 ms) +galaxy.tools INFO 2024-02-23 13:14:01,409 [pN:main.1,p:74853,tN:WSGI_0] Validated and populated state for tool request (13.629 ms) +galaxy.tools.actions INFO 2024-02-23 13:14:01,416 [pN:main.1,p:74853,tN:WSGI_0] Handled output named adaptor_report for tool ncbi_fcs_adaptor (3.499 ms) +galaxy.tools.actions INFO 2024-02-23 13:14:01,418 [pN:main.1,p:74853,tN:WSGI_0] Handled output named clean_fasta for tool ncbi_fcs_adaptor (2.432 ms) +galaxy.tools.actions INFO 2024-02-23 13:14:01,444 [pN:main.1,p:74853,tN:WSGI_0] Added output datasets to history (25.351 ms) +galaxy.tools.actions INFO 2024-02-23 13:14:01,447 [pN:main.1,p:74853,tN:WSGI_0] Setup for job Job[unflushed,tool_id=ncbi_fcs_adaptor] complete, ready to be enqueued (2.539 ms) +galaxy.tools.execute DEBUG 2024-02-23 13:14:01,447 [pN:main.1,p:74853,tN:WSGI_0] Tool ncbi_fcs_adaptor created job None (36.068 ms) +galaxy.web_stack.handlers INFO 2024-02-23 13:14:01,474 [pN:main.1,p:74853,tN:WSGI_0] (Job[id=2,tool_id=ncbi_fcs_adaptor]) Handler '_default_' assigned using 'HANDLER_ASSIGNMENT_METHODS.DB_SKIP_LOCKED' assignment method +galaxy.tools.execute DEBUG 2024-02-23 13:14:01,478 [pN:main.1,p:74853,tN:WSGI_0] Created 1 job(s) for tool ncbi_fcs_adaptor request (69.445 ms) +galaxy.jobs.mapper DEBUG 2024-02-23 13:14:01,570 [pN:main.1,p:74853,tN:JobHandlerQueue.monitor_thread] (2) Mapped job to destination id: docker_local +galaxy.jobs.handler DEBUG 2024-02-23 13:14:01,573 [pN:main.1,p:74853,tN:JobHandlerQueue.monitor_thread] (2) Dispatching to local runner +galaxy.jobs DEBUG 2024-02-23 13:14:01,579 [pN:main.1,p:74853,tN:JobHandlerQueue.monitor_thread] (2) Persisting job destination (destination id: docker_local) +galaxy.jobs DEBUG 2024-02-23 13:14:01,584 [pN:main.1,p:74853,tN:JobHandlerQueue.monitor_thread] (2) Working directory for job is: /tmp/tmpj6ure7bs/job_working_directory/000/2 +galaxy.jobs.runners DEBUG 2024-02-23 13:14:01,593 [pN:main.1,p:74853,tN:JobHandlerQueue.monitor_thread] Job [2] queued (19.486 ms) +galaxy.jobs.handler INFO 2024-02-23 13:14:01,603 [pN:main.1,p:74853,tN:JobHandlerQueue.monitor_thread] (2) Job dispatched +galaxy.security.object_wrapper WARNING 2024-02-23 13:14:01,642 [pN:main.1,p:74853,tN:LocalRunner.work_thread-1] Unable to create dynamic subclass SafeStringWrapper__galaxy.model.none_like.None__NoneType__NotImplementedType__Number__SafeStringWrapper__ToolParameterValueWrapper__bool__bytearray__ellipsis for <class 'galaxy.model.none_like.NoneDataset'>, None: type() doesn't support MRO entry resolution; use types.new_class() +galaxy.jobs DEBUG 2024-02-23 13:14:01,656 [pN:main.1,p:74853,tN:LocalRunner.work_thread-1] Job wrapper for Job [2] prepared (42.575 ms) +galaxy.tool_util.deps.containers INFO 2024-02-23 13:14:01,656 [pN:main.1,p:74853,tN:LocalRunner.work_thread-1] Checking with container resolver [ExplicitContainerResolver[]] found description [ContainerDescription[identifier=ncbi/fcs-adaptor:0.5.0,type=docker]] +galaxy.jobs.command_factory INFO 2024-02-23 13:14:01,698 [pN:main.1,p:74853,tN:LocalRunner.work_thread-1] Built script [/tmp/tmpj6ure7bs/job_working_directory/000/2/tool_script.sh] for tool command [/app/fcs/bin/av_screen_x -o "$(pwd)" '--prok' '/tmp/tmpj6ure7bs/files/3/0/3/dataset_303483b7-51f2-45b2-8279-f59f17d38a4c.dat'] +galaxy.jobs.runners DEBUG 2024-02-23 13:14:01,733 [pN:main.1,p:74853,tN:LocalRunner.work_thread-1] (2) command is: mkdir -p working outputs configs +if [ -d _working ]; then + rm -rf working/ outputs/ configs/; cp -R _working working; cp -R _outputs outputs; cp -R _configs configs +else + cp -R working _working; cp -R outputs _outputs; cp -R configs _configs +fi +cd working; +_on_exit() { + docker kill 15900a0a49e5416fa624bbd7d174f9d5 &> /dev/null +} +trap _on_exit EXIT +docker inspect ncbi/fcs-adaptor:0.5.0 > /dev/null 2>&1 +[ $? -ne 0 ] && docker pull ncbi/fcs-adaptor:0.5.0 > /dev/null 2>&1 + +docker run -e "GALAXY_SLOTS=$GALAXY_SLOTS" -e "GALAXY_MEMORY_MB=$GALAXY_MEMORY_MB" -e "GALAXY_MEMORY_MB_PER_SLOT=$GALAXY_MEMORY_MB_PER_SLOT" -e "HOME=$HOME" -e "_GALAXY_JOB_HOME_DIR=$_GALAXY_JOB_HOME_DIR" -e "_GALAXY_JOB_TMP_DIR=$_GALAXY_JOB_TMP_DIR" -e "TMPDIR=$TMPDIR" -e "TMP=$TMP" -e "TEMP=$TEMP" --name 15900a0a49e5416fa624bbd7d174f9d5 -v "$_GALAXY_JOB_TMP_DIR:$_GALAXY_JOB_TMP_DIR:rw" -v "$TMPDIR:$TMPDIR:rw" -v "$TMP:$TMP:rw" -v "$TEMP:$TEMP:rw" -v /scratch/rico/galaxy:/scratch/rico/galaxy:ro -v /scratch/rico/galaxytools/tools/ncbi_fcs_adaptor:/scratch/rico/galaxytools/tools/ncbi_fcs_adaptor:ro -v /tmp/tmpj6ure7bs/job_working_directory/000/2:/tmp/tmpj6ure7bs/job_working_directory/000/2:ro -v /tmp/tmpj6ure7bs/job_working_directory/000/2/outputs:/tmp/tmpj6ure7bs/job_working_directory/000/2/outputs:rw -v "$_GALAXY_JOB_HOME_DIR:$_GALAXY_JOB_HOME_DIR:rw" -v /tmp/tmpj6ure7bs/job_working_directory/000/2/working:/tmp/tmpj6ure7bs/job_working_directory/000/2/working:rw -v /tmp/tmpj6ure7bs/files:/tmp/tmpj6ure7bs/files:ro -v /scratch/rico/galaxy/tool-data:/scratch/rico/galaxy/tool-data:ro --cpus ${GALAXY_SLOTS:-1} -w /tmp/tmpj6ure7bs/job_working_directory/000/2/working --rm --user 1028:1028 ncbi/fcs-adaptor:0.5.0 /bin/sh /tmp/tmpj6ure7bs/job_working_directory/000/2/tool_script.sh > '../outputs/tool_stdout' 2> '../outputs/tool_stderr'; return_code=$?; echo $return_code > /tmp/tmpj6ure7bs/job_working_directory/000/2/galaxy_2.ec; +if [ -f "/tmp/tmpj6ure7bs/job_working_directory/000/2/working/fcs_adaptor_report.txt" ] ; then cp "/tmp/tmpj6ure7bs/job_working_directory/000/2/working/fcs_adaptor_report.txt" "/tmp/tmpj6ure7bs/job_working_directory/000/2/outputs/dataset_fab2b00e-e716-4cd6-ab32-0509438ea8f2.dat" ; fi; +if [ -f "/tmp/tmpj6ure7bs/job_working_directory/000/2/working/cleaned_sequences/"*".dat" ] ; then cp "/tmp/tmpj6ure7bs/job_working_directory/000/2/working/cleaned_sequences/"*".dat" "/tmp/tmpj6ure7bs/job_working_directory/000/2/outputs/dataset_ccbb6293-458e-4095-89f6-0e946f989b0b.dat" ; fi; cd '/tmp/tmpj6ure7bs/job_working_directory/000/2'; +[ "$GALAXY_VIRTUAL_ENV" = "None" ] && GALAXY_VIRTUAL_ENV="$_GALAXY_VIRTUAL_ENV"; _galaxy_setup_environment True; python metadata/set.py; sh -c "exit $return_code" +galaxy.jobs.runners.local DEBUG 2024-02-23 13:14:01,758 [pN:main.1,p:74853,tN:LocalRunner.work_thread-1] (2) executing job script: /tmp/tmpj6ure7bs/job_working_directory/000/2/galaxy_2.sh +galaxy.jobs.runners.util.process_groups DEBUG 2024-02-23 13:14:51,671 [pN:main.1,p:74853,tN:LocalRunner.work_thread-1] check_pg(): No process found in process group 75033 +galaxy.jobs.runners.local DEBUG 2024-02-23 13:14:51,673 [pN:main.1,p:74853,tN:LocalRunner.work_thread-1] execution finished: /tmp/tmpj6ure7bs/job_working_directory/000/2/galaxy_2.sh +galaxy.jobs DEBUG 2024-02-23 13:14:51,719 [pN:main.1,p:74853,tN:LocalRunner.work_thread-1] finish(): Moved /tmp/tmpj6ure7bs/job_working_directory/000/2/outputs/dataset_fab2b00e-e716-4cd6-ab32-0509438ea8f2.dat to /tmp/tmpj6ure7bs/files/f/a/b/dataset_fab2b00e-e716-4cd6-ab32-0509438ea8f2.dat +galaxy.jobs DEBUG 2024-02-23 13:14:51,720 [pN:main.1,p:74853,tN:LocalRunner.work_thread-1] finish(): Moved /tmp/tmpj6ure7bs/job_working_directory/000/2/outputs/dataset_ccbb6293-458e-4095-89f6-0e946f989b0b.dat to /tmp/tmpj6ure7bs/files/c/c/b/dataset_ccbb6293-458e-4095-89f6-0e946f989b0b.dat +galaxy.model.metadata DEBUG 2024-02-23 13:14:51,759 [pN:main.1,p:74853,tN:LocalRunner.work_thread-1] loading metadata from file for: HistoryDatasetAssociation 2 +galaxy.model.metadata DEBUG 2024-02-23 13:14:51,768 [pN:main.1,p:74853,tN:LocalRunner.work_thread-1] loading metadata from file for: HistoryDatasetAssociation 3 +galaxy.jobs DEBUG 2024-02-23 13:14:51,801 [pN:main.1,p:74853,tN:LocalRunner.work_thread-1] job_wrapper.finish for job 2 executed (103.873 ms) +multipart.multipart DEBUG 2024-02-23 13:14:52,699 [pN:main.1,p:74853,tN:MainThread] Calling on_field_start with no data +multipart.multipart DEBUG 2024-02-23 13:14:52,699 [pN:main.1,p:74853,tN:MainThread] Calling on_field_name with data[0:4] +multipart.multipart DEBUG 2024-02-23 13:14:52,700 [pN:main.1,p:74853,tN:MainThread] Calling on_field_data with data[5:63] +multipart.multipart DEBUG 2024-02-23 13:14:52,700 [pN:main.1,p:74853,tN:MainThread] Calling on_field_end with no data +multipart.multipart DEBUG 2024-02-23 13:14:52,700 [pN:main.1,p:74853,tN:MainThread] Calling on_end with no data +galaxy.tools INFO 2024-02-23 13:14:52,845 [pN:main.1,p:74853,tN:WSGI_8] Validated and populated state for tool request (7.865 ms) +galaxy.tools.actions.upload DEBUG 2024-02-23 13:14:52,848 [pN:main.1,p:74853,tN:WSGI_8] Persisted uploads (0.123 ms) +galaxy.tools.actions.upload DEBUG 2024-02-23 13:14:52,891 [pN:main.1,p:74853,tN:WSGI_8] Checked uploads (42.421 ms) +galaxy.tools.actions.upload DEBUG 2024-02-23 13:14:52,893 [pN:main.1,p:74853,tN:WSGI_8] Created upload job (2.161 ms) +galaxy.tools.execute DEBUG 2024-02-23 13:14:52,893 [pN:main.1,p:74853,tN:WSGI_8] Tool upload1 created job None (45.249 ms) +galaxy.web_stack.handlers INFO 2024-02-23 13:14:52,906 [pN:main.1,p:74853,tN:WSGI_8] (Job[id=3,tool_id=upload1]) Handler '_default_' assigned using 'HANDLER_ASSIGNMENT_METHODS.DB_SKIP_LOCKED' assignment method +galaxy.tools.execute DEBUG 2024-02-23 13:14:52,909 [pN:main.1,p:74853,tN:WSGI_8] Created 1 job(s) for tool upload1 request (63.928 ms) +galaxy.jobs.mapper DEBUG 2024-02-23 13:14:53,827 [pN:main.1,p:74853,tN:JobHandlerQueue.monitor_thread] (3) Mapped job to destination id: docker_local +galaxy.jobs.handler DEBUG 2024-02-23 13:14:53,831 [pN:main.1,p:74853,tN:JobHandlerQueue.monitor_thread] (3) Dispatching to local runner +galaxy.jobs DEBUG 2024-02-23 13:14:53,838 [pN:main.1,p:74853,tN:JobHandlerQueue.monitor_thread] (3) Persisting job destination (destination id: docker_local) +galaxy.jobs DEBUG 2024-02-23 13:14:53,843 [pN:main.1,p:74853,tN:JobHandlerQueue.monitor_thread] (3) Working directory for job is: /tmp/tmpj6ure7bs/job_working_directory/000/3 +galaxy.jobs.runners DEBUG 2024-02-23 13:14:53,848 [pN:main.1,p:74853,tN:JobHandlerQueue.monitor_thread] Job [3] queued (17.198 ms) +galaxy.jobs.handler INFO 2024-02-23 13:14:53,862 [pN:main.1,p:74853,tN:JobHandlerQueue.monitor_thread] (3) Job dispatched +galaxy.jobs DEBUG 2024-02-23 13:14:53,913 [pN:main.1,p:74853,tN:LocalRunner.work_thread-2] Job wrapper for Job [3] prepared (40.063 ms) +galaxy.tool_util.deps.containers INFO 2024-02-23 13:14:53,913 [pN:main.1,p:74853,tN:LocalRunner.work_thread-2] Checking with container resolver [ExplicitContainerResolver[]] found description [None] +galaxy.tool_util.deps.containers INFO 2024-02-23 13:14:53,913 [pN:main.1,p:74853,tN:LocalRunner.work_thread-2] Checking with container resolver [CachedMulledDockerContainerResolver[namespace=biocontainers]] found description [None] +galaxy.tool_util.deps.containers INFO 2024-02-23 13:14:53,913 [pN:main.1,p:74853,tN:LocalRunner.work_thread-2] Checking with container resolver [CachedMulledDockerContainerResolver[namespace=local]] found description [None] +galaxy.tool_util.deps.containers INFO 2024-02-23 13:14:53,914 [pN:main.1,p:74853,tN:LocalRunner.work_thread-2] Checking with container resolver [MulledDockerContainerResolver[namespace=biocontainers]] found description [None] +galaxy.tool_util.deps.containers INFO 2024-02-23 13:14:53,914 [pN:main.1,p:74853,tN:LocalRunner.work_thread-2] Checking with container resolver [BuildDockerContainerResolver[namespace=local]] found description [None] +galaxy.jobs.command_factory INFO 2024-02-23 13:14:53,944 [pN:main.1,p:74853,tN:LocalRunner.work_thread-2] Built script [/tmp/tmpj6ure7bs/job_working_directory/000/3/tool_script.sh] for tool command [python '/scratch/rico/galaxy/tools/data_source/upload.py' '/scratch/rico/galaxy' '/tmp/tmpj6ure7bs/job_working_directory/000/3/registry.xml' '/tmp/tmpj6ure7bs/job_working_directory/000/3/upload_params.json' '4:/tmp/tmpj6ure7bs/job_working_directory/000/3/outputs/dataset_a9a022dd-9347-484e-b0d5-f0e043707b2d_files:/tmp/tmpj6ure7bs/job_working_directory/000/3/outputs/dataset_a9a022dd-9347-484e-b0d5-f0e043707b2d.dat'] +galaxy.jobs.runners DEBUG 2024-02-23 13:14:53,972 [pN:main.1,p:74853,tN:LocalRunner.work_thread-2] (3) command is: mkdir -p working outputs configs +if [ -d _working ]; then + rm -rf working/ outputs/ configs/; cp -R _working working; cp -R _outputs outputs; cp -R _configs configs +else + cp -R working _working; cp -R outputs _outputs; cp -R configs _configs +fi +cd working; /bin/bash /tmp/tmpj6ure7bs/job_working_directory/000/3/tool_script.sh > '../outputs/tool_stdout' 2> '../outputs/tool_stderr'; return_code=$?; echo $return_code > /tmp/tmpj6ure7bs/job_working_directory/000/3/galaxy_3.ec; cd '/tmp/tmpj6ure7bs/job_working_directory/000/3'; +[ "$GALAXY_VIRTUAL_ENV" = "None" ] && GALAXY_VIRTUAL_ENV="$_GALAXY_VIRTUAL_ENV"; _galaxy_setup_environment True; python metadata/set.py; sh -c "exit $return_code" +galaxy.jobs.runners.local DEBUG 2024-02-23 13:14:53,995 [pN:main.1,p:74853,tN:LocalRunner.work_thread-2] (3) executing job script: /tmp/tmpj6ure7bs/job_working_directory/000/3/galaxy_3.sh +galaxy.jobs.runners.util.process_groups DEBUG 2024-02-23 13:15:00,811 [pN:main.1,p:74853,tN:LocalRunner.work_thread-2] check_pg(): No process found in process group 75352 +galaxy.jobs.runners.local DEBUG 2024-02-23 13:15:00,812 [pN:main.1,p:74853,tN:LocalRunner.work_thread-2] execution finished: /tmp/tmpj6ure7bs/job_working_directory/000/3/galaxy_3.sh +galaxy.jobs DEBUG 2024-02-23 13:15:00,836 [pN:main.1,p:74853,tN:LocalRunner.work_thread-2] finish(): Moved /tmp/tmpj6ure7bs/job_working_directory/000/3/outputs/dataset_a9a022dd-9347-484e-b0d5-f0e043707b2d.dat to /tmp/tmpj6ure7bs/files/a/9/a/dataset_a9a022dd-9347-484e-b0d5-f0e043707b2d.dat +galaxy.model.metadata DEBUG 2024-02-23 13:15:00,844 [pN:main.1,p:74853,tN:LocalRunner.work_thread-2] loading metadata from file for: HistoryDatasetAssociation 4 +galaxy.jobs DEBUG 2024-02-23 13:15:00,870 [pN:main.1,p:74853,tN:LocalRunner.work_thread-2] job_wrapper.finish for job 3 executed (41.253 ms) +galaxy.tools INFO 2024-02-23 13:15:01,076 [pN:main.1,p:74853,tN:WSGI_5] Validated and populated state for tool request (3.879 ms) +galaxy.tools.actions INFO 2024-02-23 13:15:01,080 [pN:main.1,p:74853,tN:WSGI_5] Handled output named adaptor_report for tool ncbi_fcs_adaptor (1.139 ms) +galaxy.tools.actions INFO 2024-02-23 13:15:01,081 [pN:main.1,p:74853,tN:WSGI_5] Handled output named clean_fasta for tool ncbi_fcs_adaptor (0.765 ms) +galaxy.tools.actions DEBUG 2024-02-23 13:15:01,082 [pN:main.1,p:74853,tN:WSGI_5] Tool ncbi_fcs_adaptor output adaptor_log: dataset output filter (advanced['optional_log'] is not None and 'adaptor_log' in advanced['optional_log'].split(',')) failed: 'list' object has no attribute 'split' +galaxy.tools.actions INFO 2024-02-23 13:15:01,085 [pN:main.1,p:74853,tN:WSGI_5] Handled output named adaptor_log for tool ncbi_fcs_adaptor (3.009 ms) +galaxy.tools.actions DEBUG 2024-02-23 13:15:01,085 [pN:main.1,p:74853,tN:WSGI_5] Tool ncbi_fcs_adaptor output validate_fasta_log: dataset output filter (advanced['optional_log'] is not None and 'validate_fasta_log' in advanced['optional_log'].split(',')) failed: 'list' object has no attribute 'split' +galaxy.tools.actions INFO 2024-02-23 13:15:01,087 [pN:main.1,p:74853,tN:WSGI_5] Handled output named validate_fasta_log for tool ncbi_fcs_adaptor (2.524 ms) +galaxy.tools.actions INFO 2024-02-23 13:15:01,095 [pN:main.1,p:74853,tN:WSGI_5] Added output datasets to history (7.704 ms) +galaxy.tools.actions INFO 2024-02-23 13:15:01,097 [pN:main.1,p:74853,tN:WSGI_5] Setup for job Job[unflushed,tool_id=ncbi_fcs_adaptor] complete, ready to be enqueued (1.987 ms) +galaxy.tools.execute DEBUG 2024-02-23 13:15:01,098 [pN:main.1,p:74853,tN:WSGI_5] Tool ncbi_fcs_adaptor created job None (19.842 ms) +galaxy.web_stack.handlers INFO 2024-02-23 13:15:01,118 [pN:main.1,p:74853,tN:WSGI_5] (Job[id=4,tool_id=ncbi_fcs_adaptor]) Handler '_default_' assigned using 'HANDLER_ASSIGNMENT_METHODS.DB_SKIP_LOCKED' assignment method +galaxy.tools.execute DEBUG 2024-02-23 13:15:01,122 [pN:main.1,p:74853,tN:WSGI_5] Created 1 job(s) for tool ncbi_fcs_adaptor request (46.137 ms) +galaxy.jobs.mapper DEBUG 2024-02-23 13:15:02,057 [pN:main.1,p:74853,tN:JobHandlerQueue.monitor_thread] (4) Mapped job to destination id: docker_local +galaxy.jobs.handler DEBUG 2024-02-23 13:15:02,060 [pN:main.1,p:74853,tN:JobHandlerQueue.monitor_thread] (4) Dispatching to local runner +galaxy.jobs DEBUG 2024-02-23 13:15:02,066 [pN:main.1,p:74853,tN:JobHandlerQueue.monitor_thread] (4) Persisting job destination (destination id: docker_local) +galaxy.jobs DEBUG 2024-02-23 13:15:02,072 [pN:main.1,p:74853,tN:JobHandlerQueue.monitor_thread] (4) Working directory for job is: /tmp/tmpj6ure7bs/job_working_directory/000/4 +galaxy.jobs.runners DEBUG 2024-02-23 13:15:02,079 [pN:main.1,p:74853,tN:JobHandlerQueue.monitor_thread] Job [4] queued (18.111 ms) +galaxy.jobs.handler INFO 2024-02-23 13:15:02,088 [pN:main.1,p:74853,tN:JobHandlerQueue.monitor_thread] (4) Job dispatched +galaxy.jobs DEBUG 2024-02-23 13:15:02,136 [pN:main.1,p:74853,tN:LocalRunner.work_thread-3] Job wrapper for Job [4] prepared (38.436 ms) +galaxy.tool_util.deps.containers INFO 2024-02-23 13:15:02,137 [pN:main.1,p:74853,tN:LocalRunner.work_thread-3] Checking with container resolver [ExplicitContainerResolver[]] found description [ContainerDescription[identifier=ncbi/fcs-adaptor:0.5.0,type=docker]] +galaxy.jobs.command_factory INFO 2024-02-23 13:15:02,175 [pN:main.1,p:74853,tN:LocalRunner.work_thread-3] Built script [/tmp/tmpj6ure7bs/job_working_directory/000/4/tool_script.sh] for tool command [/app/fcs/bin/av_screen_x -o "$(pwd)" '--prok' '/tmp/tmpj6ure7bs/files/a/9/a/dataset_a9a022dd-9347-484e-b0d5-f0e043707b2d.dat'] +galaxy.jobs.runners DEBUG 2024-02-23 13:15:02,220 [pN:main.1,p:74853,tN:LocalRunner.work_thread-3] (4) command is: mkdir -p working outputs configs +if [ -d _working ]; then + rm -rf working/ outputs/ configs/; cp -R _working working; cp -R _outputs outputs; cp -R _configs configs +else + cp -R working _working; cp -R outputs _outputs; cp -R configs _configs +fi +cd working; +_on_exit() { + docker kill cc542df8dde14dfdb8fe7fd463c7c3c7 &> /dev/null +} +trap _on_exit EXIT +docker inspect ncbi/fcs-adaptor:0.5.0 > /dev/null 2>&1 +[ $? -ne 0 ] && docker pull ncbi/fcs-adaptor:0.5.0 > /dev/null 2>&1 + +docker run -e "GALAXY_SLOTS=$GALAXY_SLOTS" -e "GALAXY_MEMORY_MB=$GALAXY_MEMORY_MB" -e "GALAXY_MEMORY_MB_PER_SLOT=$GALAXY_MEMORY_MB_PER_SLOT" -e "HOME=$HOME" -e "_GALAXY_JOB_HOME_DIR=$_GALAXY_JOB_HOME_DIR" -e "_GALAXY_JOB_TMP_DIR=$_GALAXY_JOB_TMP_DIR" -e "TMPDIR=$TMPDIR" -e "TMP=$TMP" -e "TEMP=$TEMP" --name cc542df8dde14dfdb8fe7fd463c7c3c7 -v "$_GALAXY_JOB_TMP_DIR:$_GALAXY_JOB_TMP_DIR:rw" -v "$TMPDIR:$TMPDIR:rw" -v "$TMP:$TMP:rw" -v "$TEMP:$TEMP:rw" -v /scratch/rico/galaxy:/scratch/rico/galaxy:ro -v /scratch/rico/galaxytools/tools/ncbi_fcs_adaptor:/scratch/rico/galaxytools/tools/ncbi_fcs_adaptor:ro -v /tmp/tmpj6ure7bs/job_working_directory/000/4:/tmp/tmpj6ure7bs/job_working_directory/000/4:ro -v /tmp/tmpj6ure7bs/job_working_directory/000/4/outputs:/tmp/tmpj6ure7bs/job_working_directory/000/4/outputs:rw -v "$_GALAXY_JOB_HOME_DIR:$_GALAXY_JOB_HOME_DIR:rw" -v /tmp/tmpj6ure7bs/job_working_directory/000/4/working:/tmp/tmpj6ure7bs/job_working_directory/000/4/working:rw -v /tmp/tmpj6ure7bs/files:/tmp/tmpj6ure7bs/files:ro -v /scratch/rico/galaxy/tool-data:/scratch/rico/galaxy/tool-data:ro --cpus ${GALAXY_SLOTS:-1} -w /tmp/tmpj6ure7bs/job_working_directory/000/4/working --rm --user 1028:1028 ncbi/fcs-adaptor:0.5.0 /bin/sh /tmp/tmpj6ure7bs/job_working_directory/000/4/tool_script.sh > '../outputs/tool_stdout' 2> '../outputs/tool_stderr'; return_code=$?; echo $return_code > /tmp/tmpj6ure7bs/job_working_directory/000/4/galaxy_4.ec; +if [ -f "/tmp/tmpj6ure7bs/job_working_directory/000/4/working/fcs_adaptor_report.txt" ] ; then cp "/tmp/tmpj6ure7bs/job_working_directory/000/4/working/fcs_adaptor_report.txt" "/tmp/tmpj6ure7bs/job_working_directory/000/4/outputs/dataset_aacec71b-aada-4032-b6b2-7ee79bb4cb19.dat" ; fi; +if [ -f "/tmp/tmpj6ure7bs/job_working_directory/000/4/working/cleaned_sequences/"*".dat" ] ; then cp "/tmp/tmpj6ure7bs/job_working_directory/000/4/working/cleaned_sequences/"*".dat" "/tmp/tmpj6ure7bs/job_working_directory/000/4/outputs/dataset_daeb9588-084d-42b1-90b5-ce31e282c4e3.dat" ; fi; +if [ -f "/tmp/tmpj6ure7bs/job_working_directory/000/4/working/fcs_adaptor.log" ] ; then cp "/tmp/tmpj6ure7bs/job_working_directory/000/4/working/fcs_adaptor.log" "/tmp/tmpj6ure7bs/job_working_directory/000/4/outputs/dataset_0cffd599-cd29-4f5b-a831-6a2c8755a186.dat" ; fi; +if [ -f "/tmp/tmpj6ure7bs/job_working_directory/000/4/working/validate_fasta.txt" ] ; then cp "/tmp/tmpj6ure7bs/job_working_directory/000/4/working/validate_fasta.txt" "/tmp/tmpj6ure7bs/job_working_directory/000/4/outputs/dataset_bda6dec5-5aa2-49a5-aabb-a3ed847fb7ef.dat" ; fi; cd '/tmp/tmpj6ure7bs/job_working_directory/000/4'; +[ "$GALAXY_VIRTUAL_ENV" = "None" ] && GALAXY_VIRTUAL_ENV="$_GALAXY_VIRTUAL_ENV"; _galaxy_setup_environment True; python metadata/set.py; sh -c "exit $return_code" +galaxy.jobs.runners.local DEBUG 2024-02-23 13:15:02,244 [pN:main.1,p:74853,tN:LocalRunner.work_thread-3] (4) executing job script: /tmp/tmpj6ure7bs/job_working_directory/000/4/galaxy_4.sh +galaxy.jobs.runners.util.process_groups DEBUG 2024-02-23 13:15:50,744 [pN:main.1,p:74853,tN:LocalRunner.work_thread-3] check_pg(): No process found in process group 75513 +galaxy.jobs.runners.local DEBUG 2024-02-23 13:15:50,745 [pN:main.1,p:74853,tN:LocalRunner.work_thread-3] execution finished: /tmp/tmpj6ure7bs/job_working_directory/000/4/galaxy_4.sh +galaxy.jobs DEBUG 2024-02-23 13:15:50,782 [pN:main.1,p:74853,tN:LocalRunner.work_thread-3] finish(): Moved /tmp/tmpj6ure7bs/job_working_directory/000/4/outputs/dataset_aacec71b-aada-4032-b6b2-7ee79bb4cb19.dat to /tmp/tmpj6ure7bs/files/a/a/c/dataset_aacec71b-aada-4032-b6b2-7ee79bb4cb19.dat +galaxy.jobs DEBUG 2024-02-23 13:15:50,782 [pN:main.1,p:74853,tN:LocalRunner.work_thread-3] finish(): Moved /tmp/tmpj6ure7bs/job_working_directory/000/4/outputs/dataset_daeb9588-084d-42b1-90b5-ce31e282c4e3.dat to /tmp/tmpj6ure7bs/files/d/a/e/dataset_daeb9588-084d-42b1-90b5-ce31e282c4e3.dat +galaxy.jobs DEBUG 2024-02-23 13:15:50,782 [pN:main.1,p:74853,tN:LocalRunner.work_thread-3] finish(): Moved /tmp/tmpj6ure7bs/job_working_directory/000/4/outputs/dataset_0cffd599-cd29-4f5b-a831-6a2c8755a186.dat to /tmp/tmpj6ure7bs/files/0/c/f/dataset_0cffd599-cd29-4f5b-a831-6a2c8755a186.dat +galaxy.jobs DEBUG 2024-02-23 13:15:50,783 [pN:main.1,p:74853,tN:LocalRunner.work_thread-3] finish(): Moved /tmp/tmpj6ure7bs/job_working_directory/000/4/outputs/dataset_bda6dec5-5aa2-49a5-aabb-a3ed847fb7ef.dat to /tmp/tmpj6ure7bs/files/b/d/a/dataset_bda6dec5-5aa2-49a5-aabb-a3ed847fb7ef.dat +galaxy.model.metadata DEBUG 2024-02-23 13:15:50,797 [pN:main.1,p:74853,tN:LocalRunner.work_thread-3] loading metadata from file for: HistoryDatasetAssociation 5 +galaxy.model.metadata DEBUG 2024-02-23 13:15:50,803 [pN:main.1,p:74853,tN:LocalRunner.work_thread-3] loading metadata from file for: HistoryDatasetAssociation 6 +galaxy.model.metadata DEBUG 2024-02-23 13:15:50,810 [pN:main.1,p:74853,tN:LocalRunner.work_thread-3] loading metadata from file for: HistoryDatasetAssociation 7 +galaxy.model.metadata DEBUG 2024-02-23 13:15:50,835 [pN:main.1,p:74853,tN:LocalRunner.work_thread-3] loading metadata from file for: HistoryDatasetAssociation 8 +galaxy.jobs DEBUG 2024-02-23 13:15:50,899 [pN:main.1,p:74853,tN:LocalRunner.work_thread-3] job_wrapper.finish for job 4 executed (132.845 ms) +galaxy.queue_worker INFO 2024-02-23 13:15:53,443 [pN:main.1,p:74853,tN:MainThread] Sending reconfigure_watcher control task. +galaxy.util.monitors DEBUG 2024-02-23 13:15:53,458 [pN:main.1,p:74853,tN:MainThread] Joining monitor thread +galaxy.jobs.handler INFO 2024-02-23 13:15:53,459 [pN:main.1,p:74853,tN:MainThread] sending stop signal to worker thread +galaxy.util.monitors DEBUG 2024-02-23 13:15:53,459 [pN:main.1,p:74853,tN:MainThread] Joining monitor thread +galaxy.jobs.handler INFO 2024-02-23 13:15:53,459 [pN:main.1,p:74853,tN:MainThread] job handler queue stopped +galaxy.jobs.runners INFO 2024-02-23 13:15:53,459 [pN:main.1,p:74853,tN:MainThread] LocalRunner: Sending stop signal to 4 job worker threads +galaxy.jobs.runners INFO 2024-02-23 13:15:53,460 [pN:main.1,p:74853,tN:MainThread] Waiting up to 30 seconds for job worker threads to shutdown... +galaxy.jobs.runners DEBUG 2024-02-23 13:15:53,461 [pN:main.1,p:74853,tN:MainThread] Job worker thread terminated: LocalRunner.work_thread-0 +galaxy.jobs.runners INFO 2024-02-23 13:15:53,462 [pN:main.1,p:74853,tN:MainThread] All job worker threads shutdown cleanly +galaxy.jobs.handler INFO 2024-02-23 13:15:53,462 [pN:main.1,p:74853,tN:MainThread] sending stop signal to worker thread +galaxy.util.monitors DEBUG 2024-02-23 13:15:53,462 [pN:main.1,p:74853,tN:MainThread] Joining monitor thread +galaxy.jobs.handler INFO 2024-02-23 13:15:53,462 [pN:main.1,p:74853,tN:MainThread] job handler stop queue stopped +galaxy.jobs DEBUG 2024-02-23 13:24:43,065 [pN:main,p:76107,tN:MainThread] Loading job configuration from /scratch/rico/galaxytools/tools/ncbi_fcs_adaptor/planemo_job_conf.xml +galaxy.jobs DEBUG 2024-02-23 13:24:43,065 [pN:main,p:76107,tN:MainThread] Read job configuration from file: /scratch/rico/galaxytools/tools/ncbi_fcs_adaptor/planemo_job_conf.xml +galaxy.web_stack.handlers INFO 2024-02-23 13:24:43,073 [pN:main,p:76107,tN:MainThread] JobConfiguration: No job handler assignment method is set, defaulting to 'HANDLER_ASSIGNMENT_METHODS.DB_SKIP_LOCKED', set the `assign_with` attribute on <handlers> to override the default +galaxy.jobs INFO 2024-02-23 13:24:43,073 [pN:main,p:76107,tN:MainThread] Job handler assignment methods set to: db-skip-locked +galaxy.web_stack.handlers DEBUG 2024-02-23 13:24:43,074 [pN:main,p:76107,tN:MainThread] default set to child with id or tag 'docker_local' +galaxy.jobs DEBUG 2024-02-23 13:24:43,074 [pN:main,p:76107,tN:MainThread] Done loading job configuration +galaxy.security.vault WARNING 2024-02-23 13:24:43,193 [pN:main,p:76107,tN:MainThread] No vault configured. We recommend defining the vault_config_file setting in galaxy.yml +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,221 [pN:main,p:76107,tN:MainThread] Loading datatypes from /scratch/rico/galaxy/lib/galaxy/config/sample/datatypes_conf.xml.sample +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,221 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension source.h. +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,221 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension source.c. +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,221 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension source.cpp. +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,221 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension source.py. +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,221 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension source.go. +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,222 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension source.rs. +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,222 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension source.cs. +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,222 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:Binary from the datatype registry for extension hep.root. +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,222 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:JP2 from the datatype registry for extension jp2. +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,222 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:Ab1 from the datatype registry for extension ab1. +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,222 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.assembly:Amos from the datatype registry for extension afg. +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,223 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.goldenpath:GoldenPath from the datatype registry for extension agp. +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,223 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.anvio:AnvioComposite from the datatype registry for extension anvio_cog_profile. +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,223 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.anvio:AnvioComposite from the datatype registry for extension anvio_composite. +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,223 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:Data from the datatype registry for extension anvio_classifier. +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,223 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.anvio:AnvioContigsDB from the datatype registry for extension anvio_contigs_db. +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,223 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.anvio:AnvioDB from the datatype registry for extension anvio_db. +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,224 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.anvio:AnvioGenomesDB from the datatype registry for extension anvio_genomes_db. +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,224 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.anvio:AnvioPanDB from the datatype registry for extension anvio_pan_db. +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,224 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.anvio:AnvioComposite from the datatype registry for extension anvio_pfam_profile. +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,224 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.anvio:AnvioProfileDB from the datatype registry for extension anvio_profile_db. +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,224 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.anvio:AnvioSamplesDB from the datatype registry for extension anvio_samples_db. +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,224 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.text:Json from the datatype registry for extension anvio_state. +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,224 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.anvio:AnvioStructureDB from the datatype registry for extension anvio_structure_db. +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,224 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.tabular:TSV from the datatype registry for extension anvio_variability. +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,224 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.text:Arff from the datatype registry for extension arff. +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,224 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.text:Paf from the datatype registry for extension paf. +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,224 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.text:Gfa1 from the datatype registry for extension gfa1. +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,224 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.text:Gfa2 from the datatype registry for extension gfa2. +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,224 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:GenericAsn1 from the datatype registry for extension asn1. +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,225 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:GenericAsn1Binary from the datatype registry for extension asn1-binary. +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,225 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.sequence:Axt from the datatype registry for extension axt. +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,225 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.tabular:FeatureLocationIndex from the datatype registry for extension fli. +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,225 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:Bam from the datatype registry for extension bam. +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,225 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:Binary from the datatype registry for extension bai. +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,225 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:BamInputSorted from the datatype registry for extension qname_input_sorted.bam. +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,225 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:BamQuerynameSorted from the datatype registry for extension qname_sorted.bam. +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,225 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:BamNative from the datatype registry for extension unsorted.bam. +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,225 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:ProBam from the datatype registry for extension probam. +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,225 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:CRAM from the datatype registry for extension cram. +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,225 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.interval:Bed from the datatype registry for extension bed. +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,225 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.interval:BedGraph from the datatype registry for extension bedgraph. +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,225 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.interval:BedStrict from the datatype registry for extension bedstrict. +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,225 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.interval:Bed6 from the datatype registry for extension bed6. +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,225 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.interval:Bed12 from the datatype registry for extension bed12. +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,226 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.interval:ProBed from the datatype registry for extension probed. +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,226 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.chrominfo:ChromInfo from the datatype registry for extension len. +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,226 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:DAA from the datatype registry for extension daa. +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,226 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:RMA6 from the datatype registry for extension rma6. +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,226 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:DMND from the datatype registry for extension dmnd. +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,226 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:Parquet from the datatype registry for extension parquet. +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,226 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:Idat from the datatype registry for extension idat. +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,226 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:BigBed from the datatype registry for extension bigbed. +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,226 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:BigWig from the datatype registry for extension bigwig. +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,226 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:Binary from the datatype registry for extension cxb. +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,226 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.interval:ChromatinInteractions from the datatype registry for extension chrint. +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,227 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.tabular:CSV from the datatype registry for extension csv. +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,227 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.tabular:TSV from the datatype registry for extension tsv. +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,227 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.tabular:TSV from the datatype registry for extension intermine_tabular. +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,227 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.interval:CustomTrack from the datatype registry for extension customtrack. +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,227 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.ngsindex:BowtieColorIndex from the datatype registry for extension bowtie_color_index. +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,227 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.ngsindex:BowtieBaseIndex from the datatype registry for extension bowtie_base_index. +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,227 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.sequence:csFasta from the datatype registry for extension csfasta. +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,227 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:Data from the datatype registry for extension data. +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,227 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:Binary from the datatype registry for extension gz. +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,227 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:Binary from the datatype registry for extension binary. +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,227 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.text:Json from the datatype registry for extension d3_hierarchy. +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,228 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.text:ImgtJson from the datatype registry for extension imgt.json. +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,228 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.text:GeoJson from the datatype registry for extension geojson. +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,228 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.text:Json from the datatype registry for extension data_manager_json. +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,228 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.sequence:DotBracket from the datatype registry for extension dbn. +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,228 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.tabular:Tabular from the datatype registry for extension fai. +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,228 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.sequence:Fasta from the datatype registry for extension fasta. +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,228 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.sequence:Fastg from the datatype registry for extension fastg. +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,228 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.sequence:Fastq from the datatype registry for extension fastq. +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,228 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.sequence:FastqSanger from the datatype registry for extension fastqsanger. +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,228 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.sequence:FastqSolexa from the datatype registry for extension fastqsolexa. +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,229 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.sequence:FastqCSSanger from the datatype registry for extension fastqcssanger. +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,229 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.sequence:FastqIllumina from the datatype registry for extension fastqillumina. +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,229 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.sequence:SequenceSplitLocations from the datatype registry for extension fqtoc. +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,229 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.tabular:Eland from the datatype registry for extension eland. +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,229 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.tabular:ElandMulti from the datatype registry for extension elandmulti. +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,229 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.tracks:GeneTrack from the datatype registry for extension genetrack. +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,229 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.interval:Gff from the datatype registry for extension gff. +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,229 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.interval:Gff3 from the datatype registry for extension gff3. +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,229 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.images:Gif from the datatype registry for extension gif. +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,230 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.images:Gmaj from the datatype registry for extension gmaj.zip. +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,230 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension graph_dot. +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,230 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.interval:Gtf from the datatype registry for extension gtf. +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,230 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:Binary from the datatype registry for extension toolshed.gz. +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,230 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:Binary from the datatype registry for extension hdf4. +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,230 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:H5 from the datatype registry for extension h5. +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,230 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:H5 from the datatype registry for extension scool. +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,230 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:Grib from the datatype registry for extension grib. +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,230 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:Loom from the datatype registry for extension loom. +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,230 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:Anndata from the datatype registry for extension h5ad. +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,230 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:Visium from the datatype registry for extension visium.tar.gz. +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,230 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:H5 from the datatype registry for extension mz5. +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,230 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.text:Json from the datatype registry for extension hyphy_results.json. +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,230 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.text:Json from the datatype registry for extension hivtrace. +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,231 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:Cool from the datatype registry for extension cool. +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,231 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:MCool from the datatype registry for extension mcool. +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,231 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:H5MLM from the datatype registry for extension h5mlm. +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,231 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:LudwigModel from the datatype registry for extension ludwig_model. +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,231 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.text:Html from the datatype registry for extension html. +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,231 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.text:Html from the datatype registry for extension ludwig_report.html. +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,231 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.interval:Interval from the datatype registry for extension interval. +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,231 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:Binary from the datatype registry for extension jellyfish. +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,231 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:Binary from the datatype registry for extension ktab. +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,231 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:Binary from the datatype registry for extension hist. +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,231 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:Binary from the datatype registry for extension prof. +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,282 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.isa:IsaTab from the datatype registry for extension isa-tab. +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,282 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.isa:IsaJson from the datatype registry for extension isa-json. +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,282 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.tabular:Tabular from the datatype registry for extension picard_interval_list. +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,282 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension gatk_interval. +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,283 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension gatk_report. +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,283 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.tabular:Tabular from the datatype registry for extension gatk_dbsnp. +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,283 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.tabular:Tabular from the datatype registry for extension gatk_tranche. +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,283 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.tabular:Tabular from the datatype registry for extension gatk_recal. +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,283 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.tabular:Tabular from the datatype registry for extension cnn. +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,283 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.tabular:Tabular from the datatype registry for extension cns. +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,283 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.tabular:Tabular from the datatype registry for extension cnr. +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,283 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension hhr. +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,283 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.images:Jpg from the datatype registry for extension jpg. +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,283 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.images:Tiff from the datatype registry for extension tiff. +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,283 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.images:Tiff from the datatype registry for extension tf2. +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,284 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.images:Tiff from the datatype registry for extension tf8. +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,284 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.images:Tiff from the datatype registry for extension btf. +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,284 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.images:Tiff from the datatype registry for extension tif. +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,284 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.images:Tiff from the datatype registry for extension svs. +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,284 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.images:Tiff from the datatype registry for extension scn. +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,284 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.images:Tiff from the datatype registry for extension bif. +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,284 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.images:OMETiff from the datatype registry for extension ome.tiff. +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,284 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.images:Hamamatsu from the datatype registry for extension vms. +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,284 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.images:Hamamatsu from the datatype registry for extension vmu. +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,284 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.images:Hamamatsu from the datatype registry for extension ndpi. +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,284 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.images:Mirax from the datatype registry for extension mrxs. +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,284 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.images:Sakura from the datatype registry for extension svslide. +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,284 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.images:Bmp from the datatype registry for extension bmp. +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,284 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.images:Im from the datatype registry for extension im. +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,284 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.images:Pcd from the datatype registry for extension pcd. +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,285 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.images:Pcx from the datatype registry for extension pcx. +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,285 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.images:Ppm from the datatype registry for extension ppm. +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,285 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.images:Psd from the datatype registry for extension psd. +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,285 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.images:Xbm from the datatype registry for extension xbm. +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,285 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.images:Xpm from the datatype registry for extension xpm. +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,285 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.images:Rgb from the datatype registry for extension rgb. +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,285 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.images:Pbm from the datatype registry for extension pbm. +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,285 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.images:Pgm from the datatype registry for extension pgm. +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,285 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.images:Nrrd from the datatype registry for extension nrrd. +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,285 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.images:Nrrd from the datatype registry for extension nhdr. +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,285 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.sequence:RNADotPlotMatrix from the datatype registry for extension rna_eps. +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,286 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.qiime2:QIIME2Artifact from the datatype registry for extension qza. +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,286 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.qiime2:QIIME2Visualization from the datatype registry for extension qzv. +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,286 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.qiime2:QIIME2Metadata from the datatype registry for extension qiime2.tabular. +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,286 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:CompressedZipArchive from the datatype registry for extension zip. +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,286 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:CompressedZipArchive from the datatype registry for extension ncbi_genome_dataset.zip. +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,286 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:CompressedArchive from the datatype registry for extension tar. +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,286 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:Directory from the datatype registry for extension directory. +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,286 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.text:Yaml from the datatype registry for extension yaml. +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,286 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.tabular:Tabular from the datatype registry for extension mrm. +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,288 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.proteomics:Dta from the datatype registry for extension dta. +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,288 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.proteomics:Dta2d from the datatype registry for extension dta2d. +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,288 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.proteomics:Edta from the datatype registry for extension edta. +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,288 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.proteomics:PepXml from the datatype registry for extension pepxml. +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,288 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.proteomics:PepXml from the datatype registry for extension raw_pepxml. +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,288 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.proteomics:PepXml from the datatype registry for extension peptideprophet_pepxml. +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,288 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.proteomics:PepXml from the datatype registry for extension interprophet_pepxml. +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,288 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.proteomics:ProtXML from the datatype registry for extension protxml. +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,288 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.proteomics:ParamXml from the datatype registry for extension paramxml. +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,288 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.proteomics:Kroenik from the datatype registry for extension kroenik. +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,288 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.proteomics:PepList from the datatype registry for extension peplist. +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,288 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.proteomics:PSMS from the datatype registry for extension psms. +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,288 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.proteomics:PepXmlReport from the datatype registry for extension pepxml.tsv. +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,289 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.proteomics:ProtXmlReport from the datatype registry for extension protxml.tsv. +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,289 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.proteomics:MascotDat from the datatype registry for extension mascotdat. +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,289 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.proteomics:MzIdentML from the datatype registry for extension mzid. +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,289 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.proteomics:IdXML from the datatype registry for extension idxml. +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,289 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.proteomics:TandemXML from the datatype registry for extension tandem. +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,289 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension sirius.ms. +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,289 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.proteomics:ThermoRAW from the datatype registry for extension thermo.raw. +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,289 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:BafTar from the datatype registry for extension brukerbaf.d.tar. +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,289 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:YepTar from the datatype registry for extension agilentbrukeryep.d.tar. +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,289 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:TdfTar from the datatype registry for extension brukertdf.d.tar. +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,289 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:MassHunterTar from the datatype registry for extension agilentmasshunter.d.tar. +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,289 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:MassLynxTar from the datatype registry for extension watersmasslynx.raw.tar. +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,289 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:WiffTar from the datatype registry for extension wiff.tar. +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,289 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:Wiff2Tar from the datatype registry for extension wiff2.tar. +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,289 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.proteomics:MascotXML from the datatype registry for extension mascotxml. +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,289 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.proteomics:MzTab from the datatype registry for extension mztab. +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,289 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.proteomics:MzTab2 from the datatype registry for extension mztab2. +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,290 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.proteomics:MzML from the datatype registry for extension mzml. +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,290 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.proteomics:NmrML from the datatype registry for extension nmrml. +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,290 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:Meryldb from the datatype registry for extension meryldb. +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,290 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:Bref3 from the datatype registry for extension bref3. +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,290 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.proteomics:Mgf from the datatype registry for extension mgf. +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,290 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.proteomics:Wiff from the datatype registry for extension wiff. +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,290 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.proteomics:Wiff2 from the datatype registry for extension wiff2. +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,290 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.proteomics:MzXML from the datatype registry for extension mzxml. +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,290 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.proteomics:MzData from the datatype registry for extension mzdata. +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,290 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.proteomics:Ms2 from the datatype registry for extension ms2. +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,290 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.proteomics:MzQuantML from the datatype registry for extension mzq. +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,290 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:SQlite from the datatype registry for extension sqlite. +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,290 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:MzSQlite from the datatype registry for extension mz.sqlite. +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,290 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:OSW from the datatype registry for extension osw. +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,290 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:PQP from the datatype registry for extension pqp. +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,291 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.proteomics:TraML from the datatype registry for extension traml. +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,291 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.proteomics:TrafoXML from the datatype registry for extension trafoxml. +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,291 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.proteomics:FeatureXML from the datatype registry for extension featurexml. +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,291 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.proteomics:ConsensusXML from the datatype registry for extension consensusxml. +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,291 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.proteomics:UniProtXML from the datatype registry for extension uniprotxml. +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,291 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.proteomics:XquestXML from the datatype registry for extension xquest.xml. +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,291 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.proteomics:XquestSpecXML from the datatype registry for extension spec.xml. +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,291 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.proteomics:QCML from the datatype registry for extension qcml. +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,291 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.text:Json from the datatype registry for extension mzqc. +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,291 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.proteomics:Msp from the datatype registry for extension msp. +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,291 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.proteomics:SPLibNoIndex from the datatype registry for extension splib_noindex. +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,291 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.proteomics:SPLib from the datatype registry for extension splib. +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,291 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:BlibSQlite from the datatype registry for extension blib. +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,291 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:DlibSQlite from the datatype registry for extension dlib. +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,291 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:ElibSQlite from the datatype registry for extension elib. +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,291 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.proteomics:XHunterAslFormat from the datatype registry for extension hlf. +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,292 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:IdpDB from the datatype registry for extension idpdb. +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,292 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.proteomics:Sf3 from the datatype registry for extension sf3. +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,292 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:Binary from the datatype registry for extension cps. +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,292 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.tabular:ConnectivityTable from the datatype registry for extension ct. +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,292 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:PostgresqlArchive from the datatype registry for extension postgresql. +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,292 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:MongoDBArchive from the datatype registry for extension mongodb. +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,292 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:GeneNoteBook from the datatype registry for extension genenotebook. +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,292 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:SearchGuiArchive from the datatype registry for extension searchgui_archive. +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,292 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:Fast5Archive from the datatype registry for extension fast5.tar. +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,292 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:Fast5ArchiveGz from the datatype registry for extension fast5.tar.gz. +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,292 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:Fast5ArchiveBz2 from the datatype registry for extension fast5.tar.bz2. +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,292 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:CompressedArchive from the datatype registry for extension peptideshaker_archive. +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,292 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.tabular:Tabular from the datatype registry for extension percin. +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,292 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.xml:GenericXml from the datatype registry for extension percout. +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,292 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.tabular:Tabular from the datatype registry for extension hardklor. +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,293 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.tabular:Tabular from the datatype registry for extension kronik. +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,293 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.proteomics:ImzML from the datatype registry for extension imzml. +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,293 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.images:Analyze75 from the datatype registry for extension analyze75. +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,293 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.images:Nifti1 from the datatype registry for extension nii1. +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,293 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.images:Nifti2 from the datatype registry for extension nii2. +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,293 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.images:Gifti from the datatype registry for extension gii. +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,293 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.images:Tck from the datatype registry for extension tck. +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,293 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.images:Trk from the datatype registry for extension trk. +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,293 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.images:Mrc2014 from the datatype registry for extension mrc. +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,293 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.images:Star from the datatype registry for extension star. +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,293 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.proteomics:PEFF from the datatype registry for extension peff. +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,293 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension toml. +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,294 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.flow:FCS from the datatype registry for extension fcs. +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,294 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.tabular:Tabular from the datatype registry for extension flowtext. +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,294 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.tabular:Tabular from the datatype registry for extension flowclr. +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,294 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.tabular:Tabular from the datatype registry for extension flowmfi. +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,294 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.tabular:Tabular from the datatype registry for extension flowstat1. +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,294 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.tabular:Tabular from the datatype registry for extension flowstat2. +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,294 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.tabular:Tabular from the datatype registry for extension flowstat3. +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,294 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.tabular:Tabular from the datatype registry for extension flowscore. +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,294 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:RData from the datatype registry for extension flowframe. +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,294 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:RData from the datatype registry for extension fsom. +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,295 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:RData from the datatype registry for extension flowset. +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,295 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.tabular:Tabular from the datatype registry for extension metacyto_clr.txt. +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,295 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.metacyto:mSummary from the datatype registry for extension metacyto_summary.txt. +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,295 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.metacyto:mStats from the datatype registry for extension metacyto_stats.txt. +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,295 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:CompressedArchive from the datatype registry for extension deeptools_compute_matrix_archive. +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,295 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:CompressedArchive from the datatype registry for extension deeptools_coverage_matrix. +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,295 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:NetCDF from the datatype registry for extension netcdf. +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,295 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.images:Eps from the datatype registry for extension eps. +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,295 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.images:Rast from the datatype registry for extension rast. +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,295 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.images:Laj from the datatype registry for extension laj. +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,295 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.sequence:Lav from the datatype registry for extension lav. +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,296 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.sequence:Maf from the datatype registry for extension maf. +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,296 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.sequence:MafCustomTrack from the datatype registry for extension mafcustomtrack. +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,296 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.tabular:MatrixMarket from the datatype registry for extension mtx. +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,296 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.tabular:CMAP from the datatype registry for extension cmap. +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,296 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.interval:ENCODEPeak from the datatype registry for extension encodepeak. +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,296 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.images:Pdf from the datatype registry for extension pdf. +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,296 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.tabular:Pileup from the datatype registry for extension pileup. +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,296 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.tabular:Psl from the datatype registry for extension psl. +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,296 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.text:Obo from the datatype registry for extension obo. +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,296 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.xml:Owl from the datatype registry for extension owl. +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,296 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.images:Png from the datatype registry for extension png. +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,296 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.qualityscore:QualityScore from the datatype registry for extension qual. +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,296 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.qualityscore:QualityScoreSolexa from the datatype registry for extension qualsolexa. +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,296 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.qualityscore:QualityScoreIllumina from the datatype registry for extension qualillumina. +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,296 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.qualityscore:QualityScoreSOLiD from the datatype registry for extension qualsolid. +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,296 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.qualityscore:QualityScore454 from the datatype registry for extension qual454. +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,297 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.assembly:Roadmaps from the datatype registry for extension roadmaps. +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,297 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.tabular:Sam from the datatype registry for extension sam. +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,297 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:Scf from the datatype registry for extension scf. +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,297 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.assembly:Sequences from the datatype registry for extension sequences. +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,297 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.text:SnpEffDb from the datatype registry for extension snpeffdb. +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,297 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.text:SnpSiftDbNSFP from the datatype registry for extension snpsiftdbnsfp. +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,297 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.tabular:Tabular from the datatype registry for extension dbnsfp.tabular. +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,297 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:Sff from the datatype registry for extension sff. +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,297 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:Sra from the datatype registry for extension sra. +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,297 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.tabular:SraManifest from the datatype registry for extension sra_manifest.tabular. +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,297 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.xml:GenericXml from the datatype registry for extension svg. +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,297 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.tabular:Taxonomy from the datatype registry for extension taxonomy. +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,297 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.tabular:Tabular from the datatype registry for extension tabular. +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,298 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:TwoBit from the datatype registry for extension twobit. +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,298 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:SQmass from the datatype registry for extension sqmass. +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,298 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:GeminiSQLite from the datatype registry for extension gemini.sqlite. +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,298 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:ChiraSQLite from the datatype registry for extension chira.sqlite. +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,298 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:CuffDiffSQlite from the datatype registry for extension cuffdiff.sqlite. +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,298 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:GAFASQLite from the datatype registry for extension gafa.sqlite. +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,298 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:NcbiTaxonomySQlite from the datatype registry for extension ncbitaxonomy.sqlite. +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,298 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension txt. +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,298 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:LineCount from the datatype registry for extension linecount. +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,298 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.sequence:MemePsp from the datatype registry for extension memepsp. +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,298 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.xml:MEMEXml from the datatype registry for extension memexml. +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,298 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.xml:CisML from the datatype registry for extension cisml. +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,298 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.xml:GenericXml from the datatype registry for extension xml. +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,298 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.xml:GenericXml from the datatype registry for extension xsd. +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,298 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.xml:Dzi from the datatype registry for extension dzi. +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,298 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.tabular:Vcf from the datatype registry for extension vcf. +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,299 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:Bcf from the datatype registry for extension bcf. +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,299 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:Bcf from the datatype registry for extension bcf_bgzip. +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,299 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:BcfUncompressed from the datatype registry for extension bcf_uncompressed. +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,299 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.assembly:Velvet from the datatype registry for extension velvet. +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,299 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.interval:Wiggle from the datatype registry for extension wig. +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,300 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:Binary from the datatype registry for extension interval_index. +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,300 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:Binary from the datatype registry for extension odgi. +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,300 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:CompressedArchive from the datatype registry for extension vg. +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,300 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:Binary from the datatype registry for extension xg. +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,300 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:Binary from the datatype registry for extension protobuf2. +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,300 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:Binary from the datatype registry for extension protobuf3. +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,300 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:Binary from the datatype registry for extension onnx. +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,300 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:Binary from the datatype registry for extension tabix. +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,300 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.interval:IntervalTabix from the datatype registry for extension interval_tabix.gz. +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,300 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.interval:JuicerMediumTabix from the datatype registry for extension juicer_medium_tabix.gz. +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,300 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.interval:BedTabix from the datatype registry for extension bed_tabix.gz. +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,300 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.interval:GffTabix from the datatype registry for extension gff_tabix.gz. +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,300 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:Binary from the datatype registry for extension bgzip. +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,301 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.tabular:VcfGz from the datatype registry for extension vcf_bgzip. +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,301 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:Binary from the datatype registry for extension bus. +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,301 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:Binary from the datatype registry for extension kallisto.idx. +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,301 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.xml:Phyloxml from the datatype registry for extension phyloxml. +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,301 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:Newick from the datatype registry for extension newick. +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,301 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:Newick from the datatype registry for extension nhx. +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,301 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:Nexus from the datatype registry for extension nex. +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,301 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.text:IQTree from the datatype registry for extension iqtree. +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,302 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.mothur:SquareDistanceMatrix from the datatype registry for extension mldist. +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,304 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.genetics:Affybatch from the datatype registry for extension affybatch. +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,304 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.genetics:Eigenstratgeno from the datatype registry for extension eigenstratgeno. +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,304 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.genetics:Eigenstratpca from the datatype registry for extension eigenstratpca. +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,304 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.genetics:Eset from the datatype registry for extension eset. +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,304 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.genetics:Fped from the datatype registry for extension fped. +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,304 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.genetics:Fphe from the datatype registry for extension fphe. +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,304 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.genetics:GenomeGraphs from the datatype registry for extension gg. +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,304 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.genetics:ldIndep from the datatype registry for extension ldindep. +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,304 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.genetics:MAlist from the datatype registry for extension malist. +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,304 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.genetics:Lped from the datatype registry for extension lped. +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,304 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.genetics:Pbed from the datatype registry for extension pbed. +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,304 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.genetics:Pheno from the datatype registry for extension pheno. +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,305 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.genetics:Pphe from the datatype registry for extension pphe. +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,305 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.genetics:RexpBase from the datatype registry for extension rexpbase. +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,305 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.genetics:Rgenetics from the datatype registry for extension rgenetics. +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,305 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.genetics:Snptest from the datatype registry for extension snptest. +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,305 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.genetics:SNPMatrix from the datatype registry for extension snpmatrix. +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,305 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:ExcelXls from the datatype registry for extension xls. +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,305 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.text:Ipynb from the datatype registry for extension ipynb. +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,305 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.text:Json from the datatype registry for extension json. +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,305 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.text:ExpressionJson from the datatype registry for extension expression.json. +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,306 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.graph:Xgmml from the datatype registry for extension xgmml. +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,306 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.graph:Sif from the datatype registry for extension sif. +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,306 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.triples:Triples from the datatype registry for extension triples. +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,306 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.triples:HDT from the datatype registry for extension hdt. +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,306 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.triples:NTriples from the datatype registry for extension nt. +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,306 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.triples:N3 from the datatype registry for extension n3. +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,307 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.triples:Turtle from the datatype registry for extension ttl. +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,307 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.triples:Rdf from the datatype registry for extension rdf. +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,307 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.triples:Jsonld from the datatype registry for extension jsonld. +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,307 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:ExcelXls from the datatype registry for extension excel.xls. +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,307 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:Xlsx from the datatype registry for extension xlsx. +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,307 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:Binary from the datatype registry for extension docx. +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,307 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension btwisted. +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,307 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension cai. +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,307 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension cat_db. +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,307 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension charge. +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,307 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension checktrans. +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,307 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension chips. +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,307 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension codcmp. +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,308 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension coderet. +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,308 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension compseq. +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,308 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension cpgplot. +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,308 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension cpgreport. +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,308 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension cusp. +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,308 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension cut. +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,308 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension dan. +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,308 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension digest. +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,308 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension dreg. +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,308 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension einverted. +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,308 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension epestfind. +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,308 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension equicktandem. +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,308 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension est2genome. +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,308 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension etandem. +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,309 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension freak. +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,309 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension fuzznuc. +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,309 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension fuzzpro. +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,309 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension fuzztran. +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,309 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension garnier. +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,309 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension geecee. +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,309 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension helixturnhelix. +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,309 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension hmoment. +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,309 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension isochore. +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,309 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension match. +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,309 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension nametable. +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,309 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension needle. +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,309 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension newcpgreport. +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,309 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension newcpgseek. +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,310 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension noreturn. +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,310 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension palindrome. +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,310 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension pepcoil. +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,310 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension pepinfo. +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,310 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension pepstats. +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,310 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension polydot. +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,310 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension preg. +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,310 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension prettyseq. +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,310 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension primersearch. +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,310 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension showfeat. +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,310 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension showorf. +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,310 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension sixpack. +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,310 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension strider. +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,310 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension supermatcher. +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,311 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension syco. +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,311 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension textsearch. +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,311 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension vectorstrip. +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,311 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension wobble. +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,311 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension wordcount. +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,311 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension dbmotif. +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,311 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension diffseq. +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,311 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension excel. +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,311 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension feattable. +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,311 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension motif. +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,311 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension regions. +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,311 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension seqtable. +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,311 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension simple. +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,311 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension table. +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,312 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension tagseq. +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,312 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension acedb. +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,312 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension clustal. +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,312 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension codata. +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,312 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension embl. +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,312 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension fitch. +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,312 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension gcg. +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,312 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.sequence:Genbank from the datatype registry for extension genbank. +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,312 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension hennig86. +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,312 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension ig. +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,312 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension jackknifer. +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,312 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension jackknifernon. +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,312 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension mega. +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,313 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension meganon. +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,313 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension ncbi. +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,313 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension nexus. +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,313 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension nexusnon. +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,313 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.phylip:Phylip from the datatype registry for extension phylip. +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,313 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension phylipnon. +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,313 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension pir. +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,313 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension staden. +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,313 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension swiss. +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,314 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.msa:Msf from the datatype registry for extension msf. +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,314 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension markx0. +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,314 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension markx1. +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,314 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension markx10. +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,314 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension markx2. +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,314 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension markx3. +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,314 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension pair. +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,315 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension score. +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,315 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension srs. +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,315 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension srspair. +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,315 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.annotation:SnapHmm from the datatype registry for extension snaphmm. +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,315 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.annotation:Augustus from the datatype registry for extension augustus. +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,315 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:ICM from the datatype registry for extension icm. +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,315 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.msa:InfernalCM from the datatype registry for extension cm. +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,315 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.msa:Hmmer2 from the datatype registry for extension hmm2. +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,315 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.msa:Hmmer3 from the datatype registry for extension hmm3. +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,315 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.msa:Stockholm_1_0 from the datatype registry for extension stockholm. +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,315 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.msa:MauveXmfa from the datatype registry for extension xmfa. +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,316 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.microarrays:Cel from the datatype registry for extension cel. +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,316 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.microarrays:Gpr from the datatype registry for extension gpr. +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,316 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.microarrays:Gal from the datatype registry for extension gal. +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,316 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:RDS from the datatype registry for extension rds. +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,316 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:RDS from the datatype registry for extension phyloseq. +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,316 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:RData from the datatype registry for extension rdata. +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,316 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:RData from the datatype registry for extension rdata.sce. +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,316 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:RData from the datatype registry for extension rdata.xcms.raw. +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,316 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:RData from the datatype registry for extension rdata.msnbase.raw. +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,316 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:RData from the datatype registry for extension rdata.xcms.findchrompeaks. +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,317 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:RData from the datatype registry for extension rdata.xcms.group. +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,317 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:RData from the datatype registry for extension rdata.xcms.retcor. +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,317 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:RData from the datatype registry for extension rdata.xcms.fillpeaks. +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,317 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:RData from the datatype registry for extension rdata.camera.positive. +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,317 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:RData from the datatype registry for extension rdata.camera.negative. +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,317 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:RData from the datatype registry for extension rdata.camera.quick. +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,317 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.hdf5:HDF5SummarizedExperiment from the datatype registry for extension rdata.se. +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,317 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:Binary from the datatype registry for extension rdock_as. +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,317 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:OxliCountGraph from the datatype registry for extension oxlicg. +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,317 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:OxliNodeGraph from the datatype registry for extension oxling. +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,317 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:OxliTagSet from the datatype registry for extension oxlits. +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,318 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:OxliStopTags from the datatype registry for extension oxlist. +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,318 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:OxliSubset from the datatype registry for extension oxliss. +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,318 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:OxliGraphLabels from the datatype registry for extension oxligl. +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,318 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.constructive_solid_geometry:STL from the datatype registry for extension stl. +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,319 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.constructive_solid_geometry:PlyAscii from the datatype registry for extension plyascii. +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,319 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.constructive_solid_geometry:PlyBinary from the datatype registry for extension plybinary. +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,319 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.constructive_solid_geometry:VtkAscii from the datatype registry for extension vtkascii. +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,319 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.constructive_solid_geometry:VtkBinary from the datatype registry for extension vtkbinary. +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,319 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.text:Biom1 from the datatype registry for extension biom1. +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,319 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:Biom2 from the datatype registry for extension biom2. +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,319 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:MashSketch from the datatype registry for extension msh. +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,319 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.interval:ScIdx from the datatype registry for extension scidx. +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,320 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.molecules:SMILES from the datatype registry for extension smi. +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,320 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.molecules:SDF from the datatype registry for extension sdf. +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,320 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.molecules:InChI from the datatype registry for extension inchi. +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,320 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.molecules:MOL from the datatype registry for extension mol. +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,321 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.molecules:MOL2 from the datatype registry for extension mol2. +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,321 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.molecules:CML from the datatype registry for extension cml. +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,321 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.molecules:FPS from the datatype registry for extension fps. +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,321 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.molecules:OBFS from the datatype registry for extension obfs. +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,321 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.molecules:DRF from the datatype registry for extension drf. +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,321 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.molecules:PHAR from the datatype registry for extension phar. +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,321 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.molecules:PDB from the datatype registry for extension pdb. +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,321 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.molecules:PDBQT from the datatype registry for extension pdbqt. +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,321 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.molecules:PQR from the datatype registry for extension pqr. +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,321 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.molecules:Cell from the datatype registry for extension cell. +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,321 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.molecules:CIF from the datatype registry for extension cif. +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,321 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.molecules:XYZ from the datatype registry for extension xyz. +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,321 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.molecules:ExtendedXYZ from the datatype registry for extension extxyz. +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,321 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:Trr from the datatype registry for extension trr. +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,321 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:Dcd from the datatype registry for extension dcd. +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,321 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension top. +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,322 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension prmtop. +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,322 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension itp. +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,322 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension mdp. +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,322 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension ndx. +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,322 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension xvg. +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,322 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:Xtc from the datatype registry for extension xtc. +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,322 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:Cpt from the datatype registry for extension cpt. +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,322 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:Edr from the datatype registry for extension edr. +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,322 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:Binary from the datatype registry for extension tpr. +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,322 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.molecules:GRO from the datatype registry for extension gro. +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,322 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension inpcrd. +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,322 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:Vel from the datatype registry for extension vel. +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,322 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.molecules:grd from the datatype registry for extension grd. +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,322 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.molecules:grdtgz from the datatype registry for extension grd.tgz. +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,323 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.mothur:Otu from the datatype registry for extension mothur.otu. +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,323 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.mothur:Otu from the datatype registry for extension mothur.list. +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,323 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.mothur:Sabund from the datatype registry for extension mothur.sabund. +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,323 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.mothur:Sabund from the datatype registry for extension mothur.rabund. +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,323 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.mothur:GroupAbund from the datatype registry for extension mothur.shared. +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,323 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.mothur:GroupAbund from the datatype registry for extension mothur.relabund. +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,323 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.mothur:Names from the datatype registry for extension mothur.names. +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,323 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.mothur:Group from the datatype registry for extension mothur.design. +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,323 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.mothur:Summary from the datatype registry for extension mothur.summary. +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,323 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.mothur:Group from the datatype registry for extension mothur.groups. +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,323 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.mothur:Oligos from the datatype registry for extension mothur.oligos. +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,323 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.sequence:Fasta from the datatype registry for extension mothur.align. +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,323 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.mothur:AccNos from the datatype registry for extension mothur.accnos. +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,323 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.mothur:AccNos from the datatype registry for extension mothur.otulabels. +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,324 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.tabular:Tabular from the datatype registry for extension mothur.otu.corr. +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,324 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.mothur:SecondaryStructureMap from the datatype registry for extension mothur.map. +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,324 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.mothur:AlignCheck from the datatype registry for extension mothur.align.check. +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,324 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.mothur:AlignReport from the datatype registry for extension mothur.align.report. +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,324 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.mothur:LaneMask from the datatype registry for extension mothur.filter. +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,324 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.mothur:DistanceMatrix from the datatype registry for extension mothur.dist. +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,324 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension mothur.tre. +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,324 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.mothur:PairwiseDistanceMatrix from the datatype registry for extension mothur.pair.dist. +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,324 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.mothur:SquareDistanceMatrix from the datatype registry for extension mothur.square.dist. +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,324 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.mothur:LowerTriangleDistanceMatrix from the datatype registry for extension mothur.lower.dist. +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,324 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.mothur:RefTaxonomy from the datatype registry for extension mothur.ref.taxonomy. +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,324 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.mothur:RefTaxonomy from the datatype registry for extension mothur.seq.taxonomy. +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,324 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.mothur:RefTaxonomy from the datatype registry for extension mothur.rdp.taxonomy. +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,324 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.mothur:ConsensusTaxonomy from the datatype registry for extension mothur.cons.taxonomy. +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,325 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.mothur:TaxonomySummary from the datatype registry for extension mothur.tax.summary. +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,325 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.mothur:Frequency from the datatype registry for extension mothur.freq. +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,325 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.mothur:Quantile from the datatype registry for extension mothur.quan. +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,325 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.mothur:Quantile from the datatype registry for extension mothur.filtered.quan. +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,325 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.mothur:Quantile from the datatype registry for extension mothur.masked.quan. +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,325 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.mothur:Quantile from the datatype registry for extension mothur.filtered.masked.quan. +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,325 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.mothur:Axes from the datatype registry for extension mothur.axes. +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,325 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.mothur:SffFlow from the datatype registry for extension mothur.sff.flow. +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,325 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.mothur:CountTable from the datatype registry for extension mothur.count_table. +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,325 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.neo4j:Neo4jDB from the datatype registry for extension neostore. +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,326 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.neo4j:Neo4jDBzip from the datatype registry for extension neostore.zip. +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,326 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.tracks:UCSCTrackHub from the datatype registry for extension trackhub. +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,326 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.blast:BlastXml from the datatype registry for extension blastxml. +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,326 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.blast:BlastNucDb from the datatype registry for extension blastdbn. +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,326 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.blast:BlastProtDb from the datatype registry for extension blastdbp. +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,326 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.blast:BlastDomainDb from the datatype registry for extension blastdbd. +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,327 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.blast:LastDb from the datatype registry for extension lastdb. +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,327 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.blast:BlastNucDb5 from the datatype registry for extension blastdbn5. +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,327 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.blast:BlastProtDb5 from the datatype registry for extension blastdbp5. +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,327 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.blast:BlastDomainDb5 from the datatype registry for extension blastdbd5. +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,327 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:GenericAsn1 from the datatype registry for extension maskinfo-asn1. +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,327 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:GenericAsn1Binary from the datatype registry for extension maskinfo-asn1-binary. +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,327 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:GenericAsn1 from the datatype registry for extension pssm-asn1. +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,327 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.plant_tribes:PlantTribesKsComponents from the datatype registry for extension ptkscmp. +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,327 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.plant_tribes:Smat from the datatype registry for extension smat. +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,328 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.genetics:GenotypeMatrix from the datatype registry for extension alohomora_gts. +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,328 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.tabular:Tabular from the datatype registry for extension alohomora_map. +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,328 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.tabular:Tabular from the datatype registry for extension alohomora_maf. +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,328 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.tabular:Tabular from the datatype registry for extension alohomora_ped. +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,328 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.tabular:Tabular from the datatype registry for extension linkage_pedin. +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,328 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.genetics:DataIn from the datatype registry for extension linkage_datain. +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,328 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.genetics:MarkerMap from the datatype registry for extension linkage_map. +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,328 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.tabular:Tabular from the datatype registry for extension allegro_ihaplo. +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,328 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.tabular:Tabular from the datatype registry for extension allegro_descent. +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,328 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.genetics:AllegroLOD from the datatype registry for extension allegro_fparam. +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,328 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.genetics:IdeasPre from the datatype registry for extension ideaspre. +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,328 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.xml:Sbml from the datatype registry for extension sbml. +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,329 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.spaln:SpalnNuclDb from the datatype registry for extension spalndbnp. +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,329 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.spaln:SpalnProtDb from the datatype registry for extension spalndba. +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,329 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:RDS from the datatype registry for extension dada2_dada. +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,329 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:RDS from the datatype registry for extension dada2_errorrates. +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,330 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:RDS from the datatype registry for extension dada2_mergepairs. +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,330 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.tabular:Tabular from the datatype registry for extension dada2_sequencetable. +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,330 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.tabular:Tabular from the datatype registry for extension dada2_uniques. +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,330 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:RDS from the datatype registry for extension ampvis2. +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,330 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:Binary from the datatype registry for extension ckpt. +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,330 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:Binary from the datatype registry for extension tgz. +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,331 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.media:Wav from the datatype registry for extension wav. +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,332 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.media:Mp3 from the datatype registry for extension mp3. +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,332 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.media:Mkv from the datatype registry for extension mkv. +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,332 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.media:Mp4 from the datatype registry for extension mp4. +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,332 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.media:Flv from the datatype registry for extension flv. +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,332 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.media:Mpg from the datatype registry for extension mpg. +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,332 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.speech:TextGrid from the datatype registry for extension textgrid. +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,332 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.speech:BPF from the datatype registry for extension par. +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,332 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.tabular:Tabular from the datatype registry for extension ffindex. +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,332 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:Data from the datatype registry for extension ffdata. +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,332 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:Pretext from the datatype registry for extension pretext. +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,332 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.text:Html from the datatype registry for extension immuneml_receptors.html. +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,332 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:HexrdMaterials from the datatype registry for extension hexrd.materials.h5. +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,333 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:Npz from the datatype registry for extension npz. +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,333 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:HexrdImagesNpz from the datatype registry for extension hexrd.images.npz. +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,333 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:HexrdEtaOmeNpz from the datatype registry for extension hexrd.eta_ome.npz. +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,333 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:Npz from the datatype registry for extension hexrd.scored_orientations.npz. +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,333 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.tabular:Tabular from the datatype registry for extension hexrd.accepted_orientations. +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,333 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.text:Yaml from the datatype registry for extension hexrd.yml. +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,333 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.constructive_solid_geometry:NeperTess from the datatype registry for extension neper.tess. +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,333 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.constructive_solid_geometry:NeperTesr from the datatype registry for extension neper.tesr. +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,333 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.constructive_solid_geometry:NeperPoints from the datatype registry for extension neper.points. +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,333 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.constructive_solid_geometry:NeperPointsTabular from the datatype registry for extension neper.points.tsv. +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,333 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.constructive_solid_geometry:NeperMultiScaleCell from the datatype registry for extension neper.mscell. +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,333 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.constructive_solid_geometry:GmshMsh from the datatype registry for extension gmsh.msh. +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,333 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.constructive_solid_geometry:GmshGeo from the datatype registry for extension gmsh.geo. +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,333 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.constructive_solid_geometry:ZsetGeof from the datatype registry for extension zset.geof. +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,334 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:Binary from the datatype registry for extension stl. +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,334 [pN:main,p:76107,tN:MainThread] Overriding conflicting datatype with extension 'stl', using datatype from /scratch/rico/galaxy/lib/galaxy/config/sample/datatypes_conf.xml.sample. +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,334 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.text:Text from the datatype registry for extension pov. +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,334 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.text:PithyaResult from the datatype registry for extension pithya.result. +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,334 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.text:PithyaProperty from the datatype registry for extension pithya.property. +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,334 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.text:PithyaModel from the datatype registry for extension pithya.model. +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,334 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.text:BCSLts from the datatype registry for extension bcsl.ts. +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,334 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.text:BCSLmodel from the datatype registry for extension bcsl.model. +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,334 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.text:StormSample from the datatype registry for extension storm.sample. +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,334 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.text:StormCheck from the datatype registry for extension storm.check. +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,334 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.text:CTLresult from the datatype registry for extension ctl.result. +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,334 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.text:Castep from the datatype registry for extension castep. +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,334 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.text:Param from the datatype registry for extension param. +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,334 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.text:FormattedDensity from the datatype registry for extension den_fmt. +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,335 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.larch:AthenaProject from the datatype registry for extension prj. +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,335 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.larch:FEFFInput from the datatype registry for extension inp. +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,335 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.tabular:CSV from the datatype registry for extension sp. +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,335 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.tabular:CSV from the datatype registry for extension gds. +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,335 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.tabular:CSV from the datatype registry for extension feff. +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,335 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension feffit. +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,335 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:Binary from the datatype registry for extension bil. +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,335 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension hdr. +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,335 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.gis:Shapefile from the datatype registry for extension shp. +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,336 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:FITS from the datatype registry for extension fits. +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,336 [pN:main,p:76107,tN:MainThread] Retrieved datatype module galaxy.datatypes.chain:Chain from the datatype registry for extension chain. +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,336 [pN:main,p:76107,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.plant_tribes:PlantTribesKsComponents' +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,336 [pN:main,p:76107,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.plant_tribes:Smat' +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,336 [pN:main,p:76107,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.mothur:Sabund' +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,336 [pN:main,p:76107,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.mothur:Otu' +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,336 [pN:main,p:76107,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.mothur:GroupAbund' +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,336 [pN:main,p:76107,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.mothur:SecondaryStructureMap' +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,336 [pN:main,p:76107,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.mothur:LowerTriangleDistanceMatrix' +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,336 [pN:main,p:76107,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.mothur:SquareDistanceMatrix' +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,336 [pN:main,p:76107,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.mothur:PairwiseDistanceMatrix' +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,336 [pN:main,p:76107,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.mothur:Oligos' +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,336 [pN:main,p:76107,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.mothur:Quantile' +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,336 [pN:main,p:76107,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.mothur:Frequency' +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,336 [pN:main,p:76107,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.mothur:LaneMask' +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,337 [pN:main,p:76107,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.mothur:RefTaxonomy' +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,337 [pN:main,p:76107,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.mothur:Axes' +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,337 [pN:main,p:76107,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.constructive_solid_geometry:PlyAscii' +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,337 [pN:main,p:76107,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.constructive_solid_geometry:PlyBinary' +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,337 [pN:main,p:76107,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.constructive_solid_geometry:VtkAscii' +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,337 [pN:main,p:76107,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.constructive_solid_geometry:VtkBinary' +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,337 [pN:main,p:76107,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.constructive_solid_geometry:NeperTess' +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,337 [pN:main,p:76107,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.constructive_solid_geometry:NeperTesr' +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,337 [pN:main,p:76107,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.constructive_solid_geometry:GmshMsh' +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,337 [pN:main,p:76107,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.goldenpath:GoldenPath' +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,337 [pN:main,p:76107,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.interval:ScIdx' +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,337 [pN:main,p:76107,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.tabular:Vcf' +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,337 [pN:main,p:76107,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.binary:JP2' +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,337 [pN:main,p:76107,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.binary:TwoBit' +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,337 [pN:main,p:76107,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.binary:GeminiSQLite' +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,337 [pN:main,p:76107,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.binary:SQmass' +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,337 [pN:main,p:76107,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.binary:MzSQlite' +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,337 [pN:main,p:76107,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.binary:OSW' +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,337 [pN:main,p:76107,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.binary:PQP' +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,337 [pN:main,p:76107,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.binary:IdpDB' +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,337 [pN:main,p:76107,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.binary:ElibSQlite' +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,337 [pN:main,p:76107,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.binary:DlibSQlite' +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,337 [pN:main,p:76107,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.binary:BlibSQlite' +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,337 [pN:main,p:76107,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.binary:ChiraSQLite' +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,337 [pN:main,p:76107,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.binary:CuffDiffSQlite' +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,337 [pN:main,p:76107,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.binary:GAFASQLite' +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,337 [pN:main,p:76107,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.binary:NcbiTaxonomySQlite' +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,338 [pN:main,p:76107,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.binary:SQlite' +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,338 [pN:main,p:76107,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.binary:H5MLM' +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,338 [pN:main,p:76107,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.binary:Cool' +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,338 [pN:main,p:76107,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.binary:MCool' +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,338 [pN:main,p:76107,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.binary:Loom' +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,338 [pN:main,p:76107,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.binary:Anndata' +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,338 [pN:main,p:76107,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.binary:Biom2' +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,338 [pN:main,p:76107,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.binary:HexrdMaterials' +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,338 [pN:main,p:76107,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.binary:H5' +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,338 [pN:main,p:76107,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.binary:Grib' +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,338 [pN:main,p:76107,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.binary:HexrdImagesNpz' +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,338 [pN:main,p:76107,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.binary:HexrdEtaOmeNpz' +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,338 [pN:main,p:76107,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.binary:Npz' +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,338 [pN:main,p:76107,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.binary:Bam' +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,338 [pN:main,p:76107,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.binary:BamQuerynameSorted' +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,338 [pN:main,p:76107,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.binary:BamNative' +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,338 [pN:main,p:76107,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.binary:CRAM' +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,338 [pN:main,p:76107,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.binary:Sff' +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,338 [pN:main,p:76107,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.binary:Sra' +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,338 [pN:main,p:76107,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.binary:NetCDF' +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,338 [pN:main,p:76107,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.binary:DAA' +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,338 [pN:main,p:76107,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.binary:RMA6' +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,338 [pN:main,p:76107,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.binary:DMND' +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,338 [pN:main,p:76107,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.binary:Parquet' +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,338 [pN:main,p:76107,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.binary:BafTar' +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,338 [pN:main,p:76107,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.binary:TdfTar' +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,338 [pN:main,p:76107,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.binary:MassHunterTar' +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,339 [pN:main,p:76107,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.binary:MassLynxTar' +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,339 [pN:main,p:76107,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.binary:YepTar' +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,339 [pN:main,p:76107,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.binary:WiffTar' +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,339 [pN:main,p:76107,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.binary:Fast5ArchiveGz' +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,339 [pN:main,p:76107,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.binary:Fast5ArchiveBz2' +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,339 [pN:main,p:76107,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.binary:Fast5Archive' +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,339 [pN:main,p:76107,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.binary:Meryldb' +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,339 [pN:main,p:76107,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.binary:Bref3' +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,339 [pN:main,p:76107,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.binary:PostgresqlArchive' +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,339 [pN:main,p:76107,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.binary:ICM' +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,339 [pN:main,p:76107,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.binary:Idat' +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,339 [pN:main,p:76107,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.binary:Trr' +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,339 [pN:main,p:76107,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.binary:Dcd' +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,339 [pN:main,p:76107,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.binary:Xtc' +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,339 [pN:main,p:76107,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.binary:Cpt' +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,339 [pN:main,p:76107,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.binary:Edr' +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,339 [pN:main,p:76107,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.binary:Vel' +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,339 [pN:main,p:76107,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.binary:Xlsx' +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,339 [pN:main,p:76107,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.qiime2:QIIME2Metadata' +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,339 [pN:main,p:76107,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.qiime2:QIIME2Artifact' +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,339 [pN:main,p:76107,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.qiime2:QIIME2Visualization' +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,339 [pN:main,p:76107,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.binary:CompressedZipArchive' +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,339 [pN:main,p:76107,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.binary:Pretext' +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,339 [pN:main,p:76107,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.annotation:Augustus' +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,339 [pN:main,p:76107,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.xml:Owl' +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,340 [pN:main,p:76107,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.chain:Chain' +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,340 [pN:main,p:76107,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.triples:Rdf' +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,340 [pN:main,p:76107,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.blast:BlastXml' +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,340 [pN:main,p:76107,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.images:Gifti' +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,340 [pN:main,p:76107,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.xml:Phyloxml' +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,340 [pN:main,p:76107,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.xml:Dzi' +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,340 [pN:main,p:76107,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.xml:Sbml' +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,340 [pN:main,p:76107,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.proteomics:Dta2d' +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,340 [pN:main,p:76107,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.proteomics:Edta' +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,340 [pN:main,p:76107,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.proteomics:ConsensusXML' +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,340 [pN:main,p:76107,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.proteomics:IdXML' +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,340 [pN:main,p:76107,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.proteomics:FeatureXML' +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,340 [pN:main,p:76107,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.proteomics:MascotXML' +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,340 [pN:main,p:76107,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.proteomics:Mgf' +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,340 [pN:main,p:76107,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.proteomics:Ms2' +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,340 [pN:main,p:76107,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.proteomics:Msp' +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,340 [pN:main,p:76107,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.proteomics:MzData' +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,340 [pN:main,p:76107,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.proteomics:MzIdentML' +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,340 [pN:main,p:76107,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.proteomics:MzML' +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,340 [pN:main,p:76107,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.proteomics:MzQuantML' +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,340 [pN:main,p:76107,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.proteomics:MzTab' +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,340 [pN:main,p:76107,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.proteomics:MzTab2' +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,340 [pN:main,p:76107,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.proteomics:ParamXml' +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,340 [pN:main,p:76107,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.proteomics:MzXML' +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,341 [pN:main,p:76107,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.proteomics:NmrML' +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,341 [pN:main,p:76107,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.proteomics:Kroenik' +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,341 [pN:main,p:76107,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.proteomics:PepList' +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,341 [pN:main,p:76107,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.proteomics:PSMS' +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,341 [pN:main,p:76107,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.proteomics:PepXml' +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,341 [pN:main,p:76107,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.proteomics:ProtXML' +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,341 [pN:main,p:76107,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.proteomics:SPLib' +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,341 [pN:main,p:76107,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.proteomics:TandemXML' +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,341 [pN:main,p:76107,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.proteomics:ThermoRAW' +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,341 [pN:main,p:76107,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.proteomics:TraML' +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,341 [pN:main,p:76107,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.proteomics:TrafoXML' +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,341 [pN:main,p:76107,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.proteomics:UniProtXML' +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,341 [pN:main,p:76107,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.proteomics:XquestXML' +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,341 [pN:main,p:76107,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.proteomics:XquestSpecXML' +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,341 [pN:main,p:76107,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.proteomics:QCML' +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,341 [pN:main,p:76107,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.proteomics:Wiff' +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,341 [pN:main,p:76107,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.proteomics:PEFF' +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,341 [pN:main,p:76107,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.molecules:CML' +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,341 [pN:main,p:76107,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.xml:GenericXml' +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,341 [pN:main,p:76107,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.triples:HDT' +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,341 [pN:main,p:76107,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.triples:Turtle' +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,341 [pN:main,p:76107,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.triples:NTriples' +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,342 [pN:main,p:76107,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.triples:Jsonld' +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,342 [pN:main,p:76107,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.sequence:Maf' +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,342 [pN:main,p:76107,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.sequence:Lav' +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,342 [pN:main,p:76107,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.sequence:MemePsp' +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,342 [pN:main,p:76107,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.sequence:Fastg' +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,342 [pN:main,p:76107,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.sequence:csFasta' +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,342 [pN:main,p:76107,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.qualityscore:QualityScoreSOLiD' +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,342 [pN:main,p:76107,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.qualityscore:QualityScore454' +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,342 [pN:main,p:76107,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.molecules:SDF' +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,342 [pN:main,p:76107,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.molecules:PDB' +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,342 [pN:main,p:76107,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.molecules:Cell' +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,342 [pN:main,p:76107,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.molecules:CIF' +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,342 [pN:main,p:76107,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.molecules:ExtendedXYZ' +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,342 [pN:main,p:76107,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.molecules:XYZ' +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,342 [pN:main,p:76107,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.molecules:MOL2' +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,342 [pN:main,p:76107,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.molecules:InChI' +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,342 [pN:main,p:76107,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.molecules:FPS' +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,342 [pN:main,p:76107,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.molecules:PQR' +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,342 [pN:main,p:76107,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.molecules:GRO' +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,342 [pN:main,p:76107,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.phylip:Phylip' +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,342 [pN:main,p:76107,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.sequence:Fasta' +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,342 [pN:main,p:76107,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.sequence:FastqCSSanger' +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,343 [pN:main,p:76107,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.sequence:FastqSanger' +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,343 [pN:main,p:76107,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.sequence:Fastq' +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,343 [pN:main,p:76107,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.interval:Wiggle' +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,343 [pN:main,p:76107,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.text:Html' +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,343 [pN:main,p:76107,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.images:Pdf' +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,343 [pN:main,p:76107,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.sequence:Axt' +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,343 [pN:main,p:76107,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.sequence:Genbank' +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,343 [pN:main,p:76107,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.interval:Bed' +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,343 [pN:main,p:76107,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.interval:CustomTrack' +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,343 [pN:main,p:76107,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.interval:Gtf' +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,343 [pN:main,p:76107,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.interval:Gff' +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,343 [pN:main,p:76107,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.interval:Gff3' +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,343 [pN:main,p:76107,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.tabular:Pileup' +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,343 [pN:main,p:76107,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.tabular:Psl' +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,343 [pN:main,p:76107,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.text:Paf' +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,343 [pN:main,p:76107,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.interval:Interval' +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,343 [pN:main,p:76107,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.tabular:Sam' +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,343 [pN:main,p:76107,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.data:Newick' +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,343 [pN:main,p:76107,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.data:Nexus' +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,343 [pN:main,p:76107,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.text:IQTree' +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,344 [pN:main,p:76107,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.text:Obo' +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,344 [pN:main,p:76107,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.text:Arff' +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,344 [pN:main,p:76107,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.text:Ipynb' +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,344 [pN:main,p:76107,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.text:Biom1' +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,344 [pN:main,p:76107,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.text:ImgtJson' +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,344 [pN:main,p:76107,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.text:GeoJson' +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,344 [pN:main,p:76107,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.text:PithyaResult' +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,344 [pN:main,p:76107,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.text:BCSLts' +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,344 [pN:main,p:76107,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.text:Json' +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,344 [pN:main,p:76107,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.genetics:GenotypeMatrix' +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,344 [pN:main,p:76107,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.genetics:DataIn' +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,344 [pN:main,p:76107,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.genetics:MarkerMap' +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,344 [pN:main,p:76107,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.genetics:AllegroLOD' +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,344 [pN:main,p:76107,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.sequence:RNADotPlotMatrix' +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,344 [pN:main,p:76107,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.sequence:DotBracket' +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,344 [pN:main,p:76107,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.tabular:CMAP' +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,344 [pN:main,p:76107,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.tabular:ConnectivityTable' +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,344 [pN:main,p:76107,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.tabular:CSV' +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,344 [pN:main,p:76107,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.metacyto:mSummary' +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,344 [pN:main,p:76107,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.metacyto:mStats' +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,344 [pN:main,p:76107,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.tabular:TSV' +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,345 [pN:main,p:76107,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.tabular:MatrixMarket' +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,345 [pN:main,p:76107,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.msa:Hmmer2' +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,345 [pN:main,p:76107,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.msa:Hmmer3' +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,345 [pN:main,p:76107,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.msa:Stockholm_1_0' +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,345 [pN:main,p:76107,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.msa:MauveXmfa' +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,345 [pN:main,p:76107,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.msa:InfernalCM' +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,345 [pN:main,p:76107,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.annotation:SnapHmm' +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,345 [pN:main,p:76107,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.microarrays:Cel' +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,345 [pN:main,p:76107,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.microarrays:Gpr' +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,345 [pN:main,p:76107,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.microarrays:Gal' +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,345 [pN:main,p:76107,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.binary:RData' +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,345 [pN:main,p:76107,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.binary:RDS' +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,345 [pN:main,p:76107,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.images:Mrc2014' +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,345 [pN:main,p:76107,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.images:Jpg' +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,345 [pN:main,p:76107,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.images:Png' +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,345 [pN:main,p:76107,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.images:OMETiff' +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,345 [pN:main,p:76107,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.images:Tiff' +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,345 [pN:main,p:76107,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.images:Bmp' +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,345 [pN:main,p:76107,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.images:Gif' +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,345 [pN:main,p:76107,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.images:Im' +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,346 [pN:main,p:76107,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.images:Pcd' +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,346 [pN:main,p:76107,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.images:Pcx' +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,346 [pN:main,p:76107,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.images:Ppm' +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,346 [pN:main,p:76107,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.images:Psd' +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,346 [pN:main,p:76107,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.images:Xbm' +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,346 [pN:main,p:76107,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.images:Rgb' +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,346 [pN:main,p:76107,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.images:Pbm' +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,346 [pN:main,p:76107,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.images:Pgm' +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,346 [pN:main,p:76107,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.images:Xpm' +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,346 [pN:main,p:76107,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.images:Eps' +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,346 [pN:main,p:76107,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.images:Rast' +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,346 [pN:main,p:76107,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.images:Tck' +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,346 [pN:main,p:76107,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.images:Trk' +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,346 [pN:main,p:76107,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.images:Nifti1' +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,346 [pN:main,p:76107,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.images:Nifti2' +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,346 [pN:main,p:76107,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.images:Star' +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,346 [pN:main,p:76107,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.media:Wav' +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,346 [pN:main,p:76107,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.media:Mkv' +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,346 [pN:main,p:76107,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.media:Mp3' +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,347 [pN:main,p:76107,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.media:Mp4' +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,347 [pN:main,p:76107,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.media:Flv' +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,347 [pN:main,p:76107,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.media:Mpg' +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,347 [pN:main,p:76107,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.speech:TextGrid' +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,347 [pN:main,p:76107,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.speech:BPF' +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,347 [pN:main,p:76107,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.larch:FEFFInput' +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,347 [pN:main,p:76107,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.larch:AthenaProject' +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,347 [pN:main,p:76107,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.text:Castep' +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,347 [pN:main,p:76107,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.text:CTLresult' +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,347 [pN:main,p:76107,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.text:FormattedDensity' +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,347 [pN:main,p:76107,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.text:Param' +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,347 [pN:main,p:76107,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.text:Yaml' +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,347 [pN:main,p:76107,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.binary:OxliCountGraph' +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,347 [pN:main,p:76107,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.binary:OxliNodeGraph' +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,347 [pN:main,p:76107,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.binary:OxliTagSet' +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,347 [pN:main,p:76107,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.binary:OxliStopTags' +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,347 [pN:main,p:76107,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.binary:OxliSubset' +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,347 [pN:main,p:76107,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.binary:OxliGraphLabels' +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,348 [pN:main,p:76107,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.binary:FITS' +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,348 [pN:main,p:76107,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.neo4j:Neo4jDBzip' +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,348 [pN:main,p:76107,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.text:PithyaProperty' +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,348 [pN:main,p:76107,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.text:PithyaModel' +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,348 [pN:main,p:76107,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.text:BCSLmodel' +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,348 [pN:main,p:76107,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.text:StormSample' +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,348 [pN:main,p:76107,tN:MainThread] Loaded sniffer for datatype 'galaxy.datatypes.text:StormCheck' +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,351 [pN:main,p:76107,tN:MainThread] Build site file [tool-data/shared/ucsc/ucsc_build_sites.txt] not found using sample [tool-data/shared/ucsc/ucsc_build_sites.txt.sample]. +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,351 [pN:main,p:76107,tN:MainThread] Loaded build site 'ucsc': tool-data/shared/ucsc/ucsc_build_sites.txt.sample with display sites: ['main', 'test', 'archaea', 'ucla'] +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,351 [pN:main,p:76107,tN:MainThread] Loaded build site 'gbrowse': tool-data/shared/gbrowse/gbrowse_build_sites.txt with display sites: ['modencode', 'sgd_yeast', 'tair', 'wormbase', 'wormbase_ws120', 'wormbase_ws140', 'wormbase_ws170', 'wormbase_ws180', 'wormbase_ws190', 'wormbase_ws200', 'wormbase_ws204', 'wormbase_ws210', 'wormbase_ws220', 'wormbase_ws225'] +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,351 [pN:main,p:76107,tN:MainThread] Loaded build site 'ensembl': tool-data/shared/ensembl/ensembl_sites.txt +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,351 [pN:main,p:76107,tN:MainThread] Loaded build site 'ensembl_data_url': tool-data/shared/ensembl/ensembl_sites_data_URL.txt +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,351 [pN:main,p:76107,tN:MainThread] Build site file [tool-data/shared/igv/igv_build_sites.txt] not found using sample [tool-data/shared/igv/igv_build_sites.txt.sample]. +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,351 [pN:main,p:76107,tN:MainThread] Loaded build site 'igv': tool-data/shared/igv/igv_build_sites.txt.sample +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,351 [pN:main,p:76107,tN:MainThread] Build site file [tool-data/shared/rviewer/rviewer_build_sites.txt] not found using sample [tool-data/shared/rviewer/rviewer_build_sites.txt.sample]. +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,351 [pN:main,p:76107,tN:MainThread] Loaded build site 'rviewer': tool-data/shared/rviewer/rviewer_build_sites.txt.sample +galaxy.util.tool_shed.tool_shed_registry DEBUG 2024-02-23 13:24:43,352 [pN:main,p:76107,tN:MainThread] Loading references to tool sheds from /tmp/tmpu7x63f_i/tool_sheds_conf.xml +galaxy.util.tool_shed.tool_shed_registry DEBUG 2024-02-23 13:24:43,352 [pN:main,p:76107,tN:MainThread] Loaded reference to tool shed: Target Shed +galaxy.queue_worker INFO 2024-02-23 13:24:43,352 [pN:main,p:76107,tN:MainThread] Initializing main Galaxy Queue Worker on sqlalchemy+sqlite:////tmp/tmpu7x63f_i/galaxy.sqlite?isolation_level=IMMEDIATE +galaxy.tool_util.data WARNING 2024-02-23 13:24:43,359 [pN:main,p:76107,tN:MainThread] Cannot find index file '/scratch/rico/galaxytools/tools/ncbi_fcs_adaptor/test-data/ncbi_fcs_adaptor_config.tsv' for tool data table 'ncbi_fcs_adaptor_config' +galaxy.tool_util.data DEBUG 2024-02-23 13:24:43,359 [pN:main,p:76107,tN:MainThread] Loaded tool data table 'ncbi_fcs_adaptor_config' from file '/scratch/rico/galaxytools/tools/ncbi_fcs_adaptor/tool_data_table_conf.xml.test' +galaxy.tool_util.data WARNING 2024-02-23 13:24:43,359 [pN:main,p:76107,tN:MainThread] Cannot find index file '/scratch/rico/galaxytools/tools/ncbi_fcs_adaptor/test-data/ncbi_fcs_adaptor_databases.loc' for tool data table 'ncbi_fcs_adaptor_databases' +galaxy.tool_util.data DEBUG 2024-02-23 13:24:43,359 [pN:main,p:76107,tN:MainThread] Loaded tool data table 'ncbi_fcs_adaptor_databases' from file '/scratch/rico/galaxytools/tools/ncbi_fcs_adaptor/tool_data_table_conf.xml.test' +galaxy.tool_util.data WARNING 2024-02-23 13:24:43,359 [pN:main,p:76107,tN:MainThread] Cannot find index file '/scratch/rico/galaxytools/tools/ncbi_fcs_adaptor/test-data/ncbi_fcs_adaptor_divisions.tsv' for tool data table 'ncbi_fcs_adaptor_divisions' +galaxy.tool_util.data DEBUG 2024-02-23 13:24:43,359 [pN:main,p:76107,tN:MainThread] Loaded tool data table 'ncbi_fcs_adaptor_divisions' from file '/scratch/rico/galaxytools/tools/ncbi_fcs_adaptor/tool_data_table_conf.xml.test' +galaxy.visualization.genomes ERROR 2024-02-23 13:24:43,362 [pN:main,p:76107,tN:MainThread] Error reading twobit.loc +Traceback (most recent call last): + File "/scratch/rico/galaxy/lib/galaxy/visualization/genomes.py", line 220, in reload_genomes + with open(twobit_path) as f: +FileNotFoundError: [Errno 2] No such file or directory: '/scratch/rico/galaxy/tool-data/twobit.loc' +galaxy.util WARNING 2024-02-23 13:24:43,502 [pN:main,p:76107,tN:MainThread] directory not found: /scratch/rico/galaxy/lib/galaxy/util/../../../config/plugins/activities +galaxy.tools WARNING 2024-02-23 13:24:43,503 [pN:main,p:76107,tN:MainThread] The default shed tool config file (/tmp/tmpu7x63f_i/shed_tool_conf.xml) has been added to the tool_config_file option, if this is not the desired behavior, please set shed_tool_config_file to your primary shed-enabled tool config file +galaxy.tool_util.toolbox.base INFO 2024-02-23 13:24:43,503 [pN:main,p:76107,tN:MainThread] Parsing the tool configuration /tmp/tmpu7x63f_i/tool_conf.xml +galaxy.tool_util.toolbox.base DEBUG 2024-02-23 13:24:43,503 [pN:main,p:76107,tN:MainThread] Tool path for tool configuration /tmp/tmpu7x63f_i/tool_conf.xml is None +galaxy.tool_util.toolbox.base DEBUG 2024-02-23 13:24:43,509 [pN:main,p:76107,tN:MainThread] Loaded tool id: upload1, version: 1.1.7 into tool panel.. +galaxy.tool_util.toolbox.base DEBUG 2024-02-23 13:24:43,511 [pN:main,p:76107,tN:MainThread] Loaded tool id: ncbi_fcs_adaptor, version: 0.5.0+galaxy0 into tool panel.. +galaxy.tools WARNING 2024-02-23 13:24:43,511 [pN:main,p:76107,tN:MainThread] The default shed tool config file (/tmp/tmpu7x63f_i/shed_tool_conf.xml) has been added to the tool_config_file option, if this is not the desired behavior, please set shed_tool_config_file to your primary shed-enabled tool config file +galaxy.tool_util.toolbox.base INFO 2024-02-23 13:24:43,511 [pN:main,p:76107,tN:MainThread] Parsing the tool configuration /tmp/tmpu7x63f_i/shed_tools_conf.xml +galaxy.tool_util.toolbox.base DEBUG 2024-02-23 13:24:43,511 [pN:main,p:76107,tN:MainThread] Tool path for shed tool configuration /tmp/tmpu7x63f_i/shed_tools_conf.xml is /tmp/tmpu7x63f_i/shed_tools +galaxy.tools WARNING 2024-02-23 13:24:43,511 [pN:main,p:76107,tN:MainThread] The default shed tool config file (/tmp/tmpu7x63f_i/shed_tool_conf.xml) has been added to the tool_config_file option, if this is not the desired behavior, please set shed_tool_config_file to your primary shed-enabled tool config file +galaxy.tool_util.toolbox.base INFO 2024-02-23 13:24:43,511 [pN:main,p:76107,tN:MainThread] Parsing the tool configuration /tmp/tmpu7x63f_i/empty_tool_conf.xml +galaxy.tool_util.toolbox.base DEBUG 2024-02-23 13:24:43,511 [pN:main,p:76107,tN:MainThread] Tool path for tool configuration /tmp/tmpu7x63f_i/empty_tool_conf.xml is None +galaxy.tool_util.toolbox.base DEBUG 2024-02-23 13:24:43,511 [pN:main,p:76107,tN:MainThread] Reading tools from config files finished (8.676 ms) +galaxy.tool_util.toolbox.base DEBUG 2024-02-23 13:24:43,512 [pN:main,p:76107,tN:MainThread] Loaded tool id: upload1, version: 1.1.7 into tool panel.. +galaxy.tool_util.toolbox.views.edam DEBUG 2024-02-23 13:24:43,512 [pN:main,p:76107,tN:MainThread] Loading EDAM tool panel finished (0.926 ms) +galaxy.tool_util.toolbox.base DEBUG 2024-02-23 13:24:43,513 [pN:main,p:76107,tN:MainThread] Loaded tool id: upload1, version: 1.1.7 into tool panel.. +galaxy.tool_util.toolbox.views.edam DEBUG 2024-02-23 13:24:43,513 [pN:main,p:76107,tN:MainThread] Loading EDAM tool panel finished (0.804 ms) +galaxy.tool_util.toolbox.integrated_panel DEBUG 2024-02-23 13:24:43,513 [pN:main,p:76107,tN:MainThread] Writing integrated tool panel config file to '/tmp/tmpu7x63f_i/integrated_tool_panel_conf.xml' +galaxy.util ERROR 2024-02-23 13:24:43,973 [pN:main,p:76107,tN:MainThread] Error parsing file /tmp/tmpu7x63f_i +Traceback (most recent call last): + File "/scratch/rico/galaxy/lib/galaxy/util/__init__.py", line 305, in parse_xml + tree = etree.parse(str(fname), parser=parser) + File "src/lxml/etree.pyx", line 3541, in lxml.etree.parse + File "src/lxml/parser.pxi", line 1879, in lxml.etree._parseDocument + File "src/lxml/parser.pxi", line 1905, in lxml.etree._parseDocumentFromURL + File "src/lxml/parser.pxi", line 1808, in lxml.etree._parseDocFromFile + File "src/lxml/parser.pxi", line 1180, in lxml.etree._BaseParser._parseDocFromFile + File "src/lxml/parser.pxi", line 618, in lxml.etree._ParserContext._handleParseResultDoc + File "src/lxml/parser.pxi", line 728, in lxml.etree._handleParseResult + File "src/lxml/parser.pxi", line 657, in lxml.etree._raiseParseError + File "/tmp/tmpu7x63f_i", line 1 +lxml.etree.XMLSyntaxError: Document is empty, line 1, column 1 +galaxy.tools.data_manager.manager ERROR 2024-02-23 13:24:43,974 [pN:main,p:76107,tN:MainThread] There was an error parsing your Data Manager config file "/tmp/tmpu7x63f_i": Document is empty, line 1, column 1 (tmpu7x63f_i, line 1) +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,975 [pN:main,p:76107,tN:MainThread] Loaded display application 'ucsc_bam' for datatype 'bam', inherit=False. +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,975 [pN:main,p:76107,tN:MainThread] Loaded display application 'ensembl_bam' for datatype 'bam', inherit=False. +galaxy.datatypes.display_applications.application ERROR 2024-02-23 13:24:43,976 [pN:main,p:76107,tN:MainThread] Error loading a set of Dynamic Display Application links: Unable to find data table named "igv_broad_genomes". +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,977 [pN:main,p:76107,tN:MainThread] Loaded display application 'igv_bam' for datatype 'bam', inherit=False. +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,977 [pN:main,p:76107,tN:MainThread] Loaded display application 'igb_bam' for datatype 'bam', inherit=False. +galaxy.datatypes.display_applications.application ERROR 2024-02-23 13:24:43,977 [pN:main,p:76107,tN:MainThread] Error loading a set of Dynamic Display Application links: Unable to find data table named "bam_iobio". +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,977 [pN:main,p:76107,tN:MainThread] Loaded display application 'iobio_bam' for datatype 'bam', inherit=False. +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,978 [pN:main,p:76107,tN:MainThread] Loaded display application 'igb_bed' for datatype 'bed', inherit=False. +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,978 [pN:main,p:76107,tN:MainThread] Loaded display application 'igb_bedgraph' for datatype 'bedgraph', inherit=False. +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,978 [pN:main,p:76107,tN:MainThread] Loaded display application 'ucsc_bigbed' for datatype 'bigbed', inherit=False. +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,979 [pN:main,p:76107,tN:MainThread] Loaded display application 'igb_bb' for datatype 'bigbed', inherit=False. +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,979 [pN:main,p:76107,tN:MainThread] Loaded display application 'ucsc_bigwig' for datatype 'bigwig', inherit=False. +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,979 [pN:main,p:76107,tN:MainThread] Loaded display application 'igb_bigwig' for datatype 'bigwig', inherit=False. +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,980 [pN:main,p:76107,tN:MainThread] Loaded display application 'igv_bigwig' for datatype 'bigwig', inherit=False. +galaxy.datatypes.display_applications.application ERROR 2024-02-23 13:24:43,980 [pN:main,p:76107,tN:MainThread] Error loading a set of Dynamic Display Application links: Unable to find data table named "intermine_simple_display". +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,980 [pN:main,p:76107,tN:MainThread] Loaded display application 'intermine_simple' for datatype 'intermine_tabular', inherit=False. +galaxy.datatypes.display_applications.application ERROR 2024-02-23 13:24:43,980 [pN:main,p:76107,tN:MainThread] Error loading a set of Dynamic Display Application links: Unable to find data table named "igv_broad_genomes". +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,980 [pN:main,p:76107,tN:MainThread] Loaded display application 'igv_fasta' for datatype 'fasta', inherit=True. +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,981 [pN:main,p:76107,tN:MainThread] Loaded display application 'ensembl_gff' for datatype 'gff', inherit=True. +galaxy.datatypes.display_applications.application ERROR 2024-02-23 13:24:43,982 [pN:main,p:76107,tN:MainThread] Error loading a set of Dynamic Display Application links: Unable to find data table named "igv_broad_genomes". +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,982 [pN:main,p:76107,tN:MainThread] Loaded display application 'igv_gff' for datatype 'gff', inherit=True. +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,982 [pN:main,p:76107,tN:MainThread] Loaded display application 'igb_gtf' for datatype 'gtf', inherit=False. +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,983 [pN:main,p:76107,tN:MainThread] Loaded display application 'ensembl_interval' for datatype 'interval', inherit=True. +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,984 [pN:main,p:76107,tN:MainThread] Loaded display application 'gbrowse_interval_as_bed' for datatype 'interval', inherit=True. +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,984 [pN:main,p:76107,tN:MainThread] Loaded display application 'rviewer_interval' for datatype 'interval', inherit=True. +galaxy.datatypes.display_applications.application ERROR 2024-02-23 13:24:43,984 [pN:main,p:76107,tN:MainThread] Error loading a set of Dynamic Display Application links: Unable to find data table named "igv_broad_genomes". +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,984 [pN:main,p:76107,tN:MainThread] Loaded display application 'igv_interval_as_bed' for datatype 'interval', inherit=True. +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,984 [pN:main,p:76107,tN:MainThread] Loaded display application 'avivator' for datatype 'ome.tiff', inherit=False. +galaxy.datatypes.display_applications.application ERROR 2024-02-23 13:24:43,985 [pN:main,p:76107,tN:MainThread] Error loading a set of Dynamic Display Application links: Unable to find data table named "q2view_display". +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,985 [pN:main,p:76107,tN:MainThread] Loaded display application 'q2view' for datatype 'qza', inherit=False. +galaxy.datatypes.display_applications.application ERROR 2024-02-23 13:24:43,985 [pN:main,p:76107,tN:MainThread] Error loading a set of Dynamic Display Application links: Unable to find data table named "q2view_display". +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,985 [pN:main,p:76107,tN:MainThread] Loaded display application 'q2view' for datatype 'qzv', inherit=False. +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,985 [pN:main,p:76107,tN:MainThread] Loaded display application 'ucsc_maf_customtrack' for datatype 'mafcustomtrack', inherit=False. +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,985 [pN:main,p:76107,tN:MainThread] Loaded display application 'minerva_tabular' for datatype 'tabular', inherit=False. +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,986 [pN:main,p:76107,tN:MainThread] Loaded display application 'ucsc_vcf' for datatype 'vcf', inherit=False. +galaxy.datatypes.display_applications.application ERROR 2024-02-23 13:24:43,986 [pN:main,p:76107,tN:MainThread] Error loading a set of Dynamic Display Application links: Unable to find data table named "igv_broad_genomes". +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,986 [pN:main,p:76107,tN:MainThread] Loaded display application 'igv_vcf' for datatype 'vcf', inherit=False. +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,987 [pN:main,p:76107,tN:MainThread] Loaded display application 'rviewer_vcf' for datatype 'vcf', inherit=True. +galaxy.datatypes.display_applications.application ERROR 2024-02-23 13:24:43,987 [pN:main,p:76107,tN:MainThread] Error loading a set of Dynamic Display Application links: Unable to find data table named "vcf_iobio". +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,987 [pN:main,p:76107,tN:MainThread] Loaded display application 'iobio_vcf' for datatype 'vcf', inherit=False. +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,987 [pN:main,p:76107,tN:MainThread] Loaded display application 'igb_wig' for datatype 'wig', inherit=False. +galaxy.datatypes.display_applications.application ERROR 2024-02-23 13:24:43,988 [pN:main,p:76107,tN:MainThread] Error loading a set of Dynamic Display Application links: Unable to find data table named "igv_broad_genomes". +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,988 [pN:main,p:76107,tN:MainThread] Loaded display application 'igv_vcf' for datatype 'vcf_bgzip', inherit=False. +galaxy.datatypes.display_applications.application ERROR 2024-02-23 13:24:43,988 [pN:main,p:76107,tN:MainThread] Error loading a set of Dynamic Display Application links: Unable to find data table named "igv_broad_genomes". +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,988 [pN:main,p:76107,tN:MainThread] Loaded display application 'igv_genbank' for datatype 'genbank', inherit=False. +galaxy.datatypes.display_applications.application ERROR 2024-02-23 13:24:43,988 [pN:main,p:76107,tN:MainThread] Error loading a set of Dynamic Display Application links: Unable to find data table named "biom_simple_display". +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,988 [pN:main,p:76107,tN:MainThread] Loaded display application 'biom_simple' for datatype 'biom1', inherit=False. +galaxy.datatypes.display_applications.application ERROR 2024-02-23 13:24:43,988 [pN:main,p:76107,tN:MainThread] Error loading a set of Dynamic Display Application links: Unable to find data table named "icn3d_simple_display". +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,988 [pN:main,p:76107,tN:MainThread] Loaded display application 'icn3d_simple' for datatype 'sdf', inherit=False. +galaxy.datatypes.display_applications.application ERROR 2024-02-23 13:24:43,989 [pN:main,p:76107,tN:MainThread] Error loading a set of Dynamic Display Application links: Unable to find data table named "icn3d_simple_display". +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,989 [pN:main,p:76107,tN:MainThread] Loaded display application 'icn3d_simple' for datatype 'mol2', inherit=False. +galaxy.datatypes.display_applications.application ERROR 2024-02-23 13:24:43,989 [pN:main,p:76107,tN:MainThread] Error loading a set of Dynamic Display Application links: Unable to find data table named "icn3d_simple_display". +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,989 [pN:main,p:76107,tN:MainThread] Loaded display application 'icn3d_simple' for datatype 'pdb', inherit=False. +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,989 [pN:main,p:76107,tN:MainThread] Loaded display application 'ucsc_trackhub' for datatype 'trackhub', inherit=False. +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,989 [pN:main,p:76107,tN:MainThread] Adding inherited display application 'ensembl_interval' to datatype 'bed' +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,989 [pN:main,p:76107,tN:MainThread] Adding inherited display application 'gbrowse_interval_as_bed' to datatype 'bed' +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,989 [pN:main,p:76107,tN:MainThread] Adding inherited display application 'rviewer_interval' to datatype 'bed' +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,989 [pN:main,p:76107,tN:MainThread] Adding inherited display application 'igv_interval_as_bed' to datatype 'bed' +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,989 [pN:main,p:76107,tN:MainThread] Adding inherited display application 'ensembl_interval' to datatype 'bedgraph' +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,989 [pN:main,p:76107,tN:MainThread] Adding inherited display application 'gbrowse_interval_as_bed' to datatype 'bedgraph' +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,989 [pN:main,p:76107,tN:MainThread] Adding inherited display application 'rviewer_interval' to datatype 'bedgraph' +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,989 [pN:main,p:76107,tN:MainThread] Adding inherited display application 'igv_interval_as_bed' to datatype 'bedgraph' +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,989 [pN:main,p:76107,tN:MainThread] Adding inherited display application 'ensembl_interval' to datatype 'bedstrict' +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,989 [pN:main,p:76107,tN:MainThread] Adding inherited display application 'gbrowse_interval_as_bed' to datatype 'bedstrict' +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,989 [pN:main,p:76107,tN:MainThread] Adding inherited display application 'rviewer_interval' to datatype 'bedstrict' +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,989 [pN:main,p:76107,tN:MainThread] Adding inherited display application 'igv_interval_as_bed' to datatype 'bedstrict' +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,989 [pN:main,p:76107,tN:MainThread] Adding inherited display application 'ensembl_interval' to datatype 'bed6' +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,989 [pN:main,p:76107,tN:MainThread] Adding inherited display application 'gbrowse_interval_as_bed' to datatype 'bed6' +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,989 [pN:main,p:76107,tN:MainThread] Adding inherited display application 'rviewer_interval' to datatype 'bed6' +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,989 [pN:main,p:76107,tN:MainThread] Adding inherited display application 'igv_interval_as_bed' to datatype 'bed6' +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,990 [pN:main,p:76107,tN:MainThread] Adding inherited display application 'ensembl_interval' to datatype 'bed12' +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,990 [pN:main,p:76107,tN:MainThread] Adding inherited display application 'gbrowse_interval_as_bed' to datatype 'bed12' +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,990 [pN:main,p:76107,tN:MainThread] Adding inherited display application 'rviewer_interval' to datatype 'bed12' +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,990 [pN:main,p:76107,tN:MainThread] Adding inherited display application 'igv_interval_as_bed' to datatype 'bed12' +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,990 [pN:main,p:76107,tN:MainThread] Adding inherited display application 'ensembl_interval' to datatype 'probed' +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,990 [pN:main,p:76107,tN:MainThread] Adding inherited display application 'gbrowse_interval_as_bed' to datatype 'probed' +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,990 [pN:main,p:76107,tN:MainThread] Adding inherited display application 'rviewer_interval' to datatype 'probed' +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,990 [pN:main,p:76107,tN:MainThread] Adding inherited display application 'igv_interval_as_bed' to datatype 'probed' +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,990 [pN:main,p:76107,tN:MainThread] Adding inherited display application 'ensembl_interval' to datatype 'chrint' +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,990 [pN:main,p:76107,tN:MainThread] Adding inherited display application 'gbrowse_interval_as_bed' to datatype 'chrint' +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,990 [pN:main,p:76107,tN:MainThread] Adding inherited display application 'rviewer_interval' to datatype 'chrint' +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,990 [pN:main,p:76107,tN:MainThread] Adding inherited display application 'igv_interval_as_bed' to datatype 'chrint' +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,990 [pN:main,p:76107,tN:MainThread] Adding inherited display application 'igv_fasta' to datatype 'fasta.gz' +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,990 [pN:main,p:76107,tN:MainThread] Adding inherited display application 'ensembl_gff' to datatype 'gff3' +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,990 [pN:main,p:76107,tN:MainThread] Adding inherited display application 'igv_gff' to datatype 'gff3' +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,990 [pN:main,p:76107,tN:MainThread] Adding inherited display application 'ensembl_gff' to datatype 'gff3.gz' +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,990 [pN:main,p:76107,tN:MainThread] Adding inherited display application 'igv_gff' to datatype 'gff3.gz' +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,990 [pN:main,p:76107,tN:MainThread] Adding inherited display application 'ensembl_gff' to datatype 'gff3.bz2' +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,990 [pN:main,p:76107,tN:MainThread] Adding inherited display application 'igv_gff' to datatype 'gff3.bz2' +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,990 [pN:main,p:76107,tN:MainThread] Adding inherited display application 'ensembl_gff' to datatype 'gtf' +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,990 [pN:main,p:76107,tN:MainThread] Adding inherited display application 'igv_gff' to datatype 'gtf' +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,991 [pN:main,p:76107,tN:MainThread] Adding inherited display application 'ensembl_interval' to datatype 'encodepeak' +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,991 [pN:main,p:76107,tN:MainThread] Adding inherited display application 'gbrowse_interval_as_bed' to datatype 'encodepeak' +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,991 [pN:main,p:76107,tN:MainThread] Adding inherited display application 'rviewer_interval' to datatype 'encodepeak' +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,991 [pN:main,p:76107,tN:MainThread] Adding inherited display application 'igv_interval_as_bed' to datatype 'encodepeak' +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,991 [pN:main,p:76107,tN:MainThread] Adding inherited display application 'igv_fasta' to datatype 'sequences' +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,991 [pN:main,p:76107,tN:MainThread] Adding inherited display application 'ensembl_interval' to datatype 'interval_tabix.gz' +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,991 [pN:main,p:76107,tN:MainThread] Adding inherited display application 'gbrowse_interval_as_bed' to datatype 'interval_tabix.gz' +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,991 [pN:main,p:76107,tN:MainThread] Adding inherited display application 'rviewer_interval' to datatype 'interval_tabix.gz' +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,991 [pN:main,p:76107,tN:MainThread] Adding inherited display application 'igv_interval_as_bed' to datatype 'interval_tabix.gz' +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,992 [pN:main,p:76107,tN:MainThread] Adding inherited display application 'ensembl_interval' to datatype 'juicer_medium_tabix.gz' +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,992 [pN:main,p:76107,tN:MainThread] Adding inherited display application 'gbrowse_interval_as_bed' to datatype 'juicer_medium_tabix.gz' +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,992 [pN:main,p:76107,tN:MainThread] Adding inherited display application 'rviewer_interval' to datatype 'juicer_medium_tabix.gz' +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,992 [pN:main,p:76107,tN:MainThread] Adding inherited display application 'igv_interval_as_bed' to datatype 'juicer_medium_tabix.gz' +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,992 [pN:main,p:76107,tN:MainThread] Adding inherited display application 'ensembl_interval' to datatype 'bed_tabix.gz' +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,992 [pN:main,p:76107,tN:MainThread] Adding inherited display application 'gbrowse_interval_as_bed' to datatype 'bed_tabix.gz' +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,992 [pN:main,p:76107,tN:MainThread] Adding inherited display application 'rviewer_interval' to datatype 'bed_tabix.gz' +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,992 [pN:main,p:76107,tN:MainThread] Adding inherited display application 'igv_interval_as_bed' to datatype 'bed_tabix.gz' +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,992 [pN:main,p:76107,tN:MainThread] Adding inherited display application 'ensembl_interval' to datatype 'gff_tabix.gz' +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,992 [pN:main,p:76107,tN:MainThread] Adding inherited display application 'gbrowse_interval_as_bed' to datatype 'gff_tabix.gz' +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,992 [pN:main,p:76107,tN:MainThread] Adding inherited display application 'rviewer_interval' to datatype 'gff_tabix.gz' +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,992 [pN:main,p:76107,tN:MainThread] Adding inherited display application 'igv_interval_as_bed' to datatype 'gff_tabix.gz' +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,993 [pN:main,p:76107,tN:MainThread] Adding inherited display application 'igv_fasta' to datatype 'mothur.align' +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,995 [pN:main,p:76107,tN:MainThread] Loaded converter: CONVERTER_uncompressed_to_gz +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,995 [pN:main,p:76107,tN:MainThread] Loaded converter: CONVERTER_gz_to_uncompressed +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,997 [pN:main,p:76107,tN:MainThread] Loaded converter: CONVERTER_uncompressed_to_gz +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,997 [pN:main,p:76107,tN:MainThread] Loaded converter: CONVERTER_gz_to_uncompressed +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,999 [pN:main,p:76107,tN:MainThread] Loaded converter: CONVERTER_uncompressed_to_gz +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:43,999 [pN:main,p:76107,tN:MainThread] Loaded converter: CONVERTER_gz_to_uncompressed +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:44,000 [pN:main,p:76107,tN:MainThread] Loaded converter: CONVERTER_Bam_Bai_0 +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:44,001 [pN:main,p:76107,tN:MainThread] Loaded converter: CONVERTER_bam_to_bigwig_0 +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:44,002 [pN:main,p:76107,tN:MainThread] Loaded converter: CONVERTER_bam_to_qname_sorted_bam +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:44,003 [pN:main,p:76107,tN:MainThread] Loaded converter: CONVERTER_bam_to_bigwig_0 +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:44,003 [pN:main,p:76107,tN:MainThread] Loaded converter: CONVERTER_bam_to_coodinate_sorted_bam +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:44,004 [pN:main,p:76107,tN:MainThread] Loaded converter: CONVERTER_bam_to_qname_sorted_bam +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:44,005 [pN:main,p:76107,tN:MainThread] Loaded converter: CONVERTER_cram_to_bam_0 +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:44,006 [pN:main,p:76107,tN:MainThread] Loaded converter: CONVERTER_bed_to_gff_0 +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:44,007 [pN:main,p:76107,tN:MainThread] Loaded converter: CONVERTER_interval_to_bgzip_0 +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:44,009 [pN:main,p:76107,tN:MainThread] Loaded converter: CONVERTER_interval_to_tabix_0 +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:44,010 [pN:main,p:76107,tN:MainThread] Loaded converter: CONVERTER_bed_gff_or_vcf_to_bigwig_0 +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:44,010 [pN:main,p:76107,tN:MainThread] Loaded converter: CONVERTER_bed_to_fli_0 +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:44,011 [pN:main,p:76107,tN:MainThread] Loaded converter: CONVERTER_bedgraph_to_bigwig +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:44,012 [pN:main,p:76107,tN:MainThread] Loaded converter: CONVERTER_len_to_linecount +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:44,012 [pN:main,p:76107,tN:MainThread] Loaded converter: CONVERTER_parquet_to_csv +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:44,014 [pN:main,p:76107,tN:MainThread] Loaded converter: bigwigtowig +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:44,016 [pN:main,p:76107,tN:MainThread] Loaded converter: CONVERTER_interval_to_bgzip_0 +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:44,017 [pN:main,p:76107,tN:MainThread] Loaded converter: CONVERTER_interval_to_tabix_0 +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:44,018 [pN:main,p:76107,tN:MainThread] Loaded converter: CONVERTER_bed_gff_or_vcf_to_bigwig_0 +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:44,019 [pN:main,p:76107,tN:MainThread] Loaded converter: csv_to_tabular +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:44,019 [pN:main,p:76107,tN:MainThread] Loaded converter: tabular_to_csv +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:44,020 [pN:main,p:76107,tN:MainThread] Loaded converter: CONVERTER_fasta_to_tabular +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:44,021 [pN:main,p:76107,tN:MainThread] Loaded converter: CONVERTER_fasta_to_bowtie_base_index +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:44,021 [pN:main,p:76107,tN:MainThread] Loaded converter: CONVERTER_fasta_to_bowtie_color_index +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:44,022 [pN:main,p:76107,tN:MainThread] Loaded converter: CONVERTER_fasta_to_2bit +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:44,023 [pN:main,p:76107,tN:MainThread] Loaded converter: CONVERTER_fasta_to_len +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:44,024 [pN:main,p:76107,tN:MainThread] Loaded converter: CONVERTER_fasta_to_fai +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:44,025 [pN:main,p:76107,tN:MainThread] Loaded converter: CONVERTER_uncompressed_to_gz +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:44,025 [pN:main,p:76107,tN:MainThread] Loaded converter: CONVERTER_gz_to_uncompressed +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:44,026 [pN:main,p:76107,tN:MainThread] Loaded converter: CONVERTER_fastq_to_fqtoc0 +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:44,027 [pN:main,p:76107,tN:MainThread] Loaded converter: CONVERTER_uncompressed_to_gz +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:44,028 [pN:main,p:76107,tN:MainThread] Loaded converter: CONVERTER_gz_to_uncompressed +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:44,029 [pN:main,p:76107,tN:MainThread] Loaded converter: CONVERTER_bz2_to_uncompressed +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:44,029 [pN:main,p:76107,tN:MainThread] Loaded converter: CONVERTER_fastq_to_fqtoc0 +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:44,030 [pN:main,p:76107,tN:MainThread] Loaded converter: CONVERTER_uncompressed_to_gz +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:44,031 [pN:main,p:76107,tN:MainThread] Loaded converter: CONVERTER_gz_to_uncompressed +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:44,032 [pN:main,p:76107,tN:MainThread] Loaded converter: CONVERTER_bz2_to_uncompressed +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:44,033 [pN:main,p:76107,tN:MainThread] Loaded converter: CONVERTER_fastq_to_fqtoc0 +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:44,034 [pN:main,p:76107,tN:MainThread] Loaded converter: CONVERTER_uncompressed_to_gz +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:44,034 [pN:main,p:76107,tN:MainThread] Loaded converter: CONVERTER_gz_to_uncompressed +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:44,035 [pN:main,p:76107,tN:MainThread] Loaded converter: CONVERTER_bz2_to_uncompressed +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:44,036 [pN:main,p:76107,tN:MainThread] Loaded converter: CONVERTER_fastq_to_fqtoc0 +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:44,037 [pN:main,p:76107,tN:MainThread] Loaded converter: CONVERTER_uncompressed_to_gz +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:44,038 [pN:main,p:76107,tN:MainThread] Loaded converter: CONVERTER_gz_to_uncompressed +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:44,039 [pN:main,p:76107,tN:MainThread] Loaded converter: CONVERTER_bz2_to_uncompressed +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:44,040 [pN:main,p:76107,tN:MainThread] Loaded converter: CONVERTER_fastq_to_fqtoc0 +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:44,041 [pN:main,p:76107,tN:MainThread] Loaded converter: CONVERTER_uncompressed_to_gz +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:44,042 [pN:main,p:76107,tN:MainThread] Loaded converter: CONVERTER_gz_to_uncompressed +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:44,042 [pN:main,p:76107,tN:MainThread] Loaded converter: CONVERTER_bz2_to_uncompressed +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:44,043 [pN:main,p:76107,tN:MainThread] Loaded converter: CONVERTER_gff_to_bed_0 +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:44,044 [pN:main,p:76107,tN:MainThread] Loaded converter: CONVERTER_gff_to_interval_index_0 +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:44,044 [pN:main,p:76107,tN:MainThread] Loaded converter: CONVERTER_bed_gff_or_vcf_to_bigwig_0 +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:44,045 [pN:main,p:76107,tN:MainThread] Loaded converter: CONVERTER_gff_to_fli_0 +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:44,047 [pN:main,p:76107,tN:MainThread] Loaded converter: CONVERTER_interval_to_bgzip_0 +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:44,048 [pN:main,p:76107,tN:MainThread] Loaded converter: CONVERTER_interval_to_tabix_0 +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:44,049 [pN:main,p:76107,tN:MainThread] Loaded converter: CONVERTER_uncompressed_to_gz +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:44,050 [pN:main,p:76107,tN:MainThread] Loaded converter: CONVERTER_gz_to_uncompressed +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:44,051 [pN:main,p:76107,tN:MainThread] Loaded converter: CONVERTER_bz2_to_uncompressed +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:44,051 [pN:main,p:76107,tN:MainThread] Loaded converter: CONVERTER_gff_to_interval_index_0 +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:44,052 [pN:main,p:76107,tN:MainThread] Loaded converter: CONVERTER_bed_gff_or_vcf_to_bigwig_0 +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:44,053 [pN:main,p:76107,tN:MainThread] Loaded converter: CONVERTER_interval_to_bed_0 +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:44,053 [pN:main,p:76107,tN:MainThread] Loaded converter: CONVERTER_interval_to_bedstrict_0 +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:44,054 [pN:main,p:76107,tN:MainThread] Loaded converter: CONVERTER_interval_to_bed6_0 +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:44,055 [pN:main,p:76107,tN:MainThread] Loaded converter: CONVERTER_interval_to_bed12_0 +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:44,056 [pN:main,p:76107,tN:MainThread] Loaded converter: CONVERTER_interval_to_bgzip_0 +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:44,058 [pN:main,p:76107,tN:MainThread] Loaded converter: CONVERTER_interval_to_tabix_0 +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:44,058 [pN:main,p:76107,tN:MainThread] Loaded converter: CONVERTER_interval_to_bigwig_0 +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:44,059 [pN:main,p:76107,tN:MainThread] Loaded converter: CONVERTER_picard_interval_list_to_bed6 +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:44,060 [pN:main,p:76107,tN:MainThread] Loaded converter: CONVERTER_tar_to_directory +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:44,061 [pN:main,p:76107,tN:MainThread] Loaded converter: CONVERTER_uncompressed_to_gz +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:44,062 [pN:main,p:76107,tN:MainThread] Loaded converter: CONVERTER_gz_to_uncompressed +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:44,063 [pN:main,p:76107,tN:MainThread] Loaded converter: CONVERTER_uncompressed_to_gz +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:44,063 [pN:main,p:76107,tN:MainThread] Loaded converter: CONVERTER_gz_to_uncompressed +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:44,064 [pN:main,p:76107,tN:MainThread] Loaded converter: CONVERTER_uncompressed_to_gz +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:44,065 [pN:main,p:76107,tN:MainThread] Loaded converter: CONVERTER_gz_to_uncompressed +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:44,066 [pN:main,p:76107,tN:MainThread] Loaded converter: CONVERTER_maf_to_fasta_0 +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:44,066 [pN:main,p:76107,tN:MainThread] Loaded converter: CONVERTER_maf_to_interval_0 +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:44,068 [pN:main,p:76107,tN:MainThread] Loaded converter: CONVERTER_interval_to_tabix_0 +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:44,069 [pN:main,p:76107,tN:MainThread] Loaded converter: CONVERTER_interval_to_bgzip_0 +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:44,070 [pN:main,p:76107,tN:MainThread] Loaded converter: CONVERTER_bed_gff_or_vcf_to_bigwig_0 +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:44,072 [pN:main,p:76107,tN:MainThread] Loaded converter: CONVERTER_interval_to_bgzip_0 +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:44,073 [pN:main,p:76107,tN:MainThread] Loaded converter: CONVERTER_interval_to_tabix_0 +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:44,074 [pN:main,p:76107,tN:MainThread] Loaded converter: CONVERTER_sam_to_unsorted_bam +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:44,075 [pN:main,p:76107,tN:MainThread] Loaded converter: CONVERTER_bam_to_coodinate_sorted_bam +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:44,075 [pN:main,p:76107,tN:MainThread] Loaded converter: CONVERTER_bam_to_qname_sorted_bam +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:44,076 [pN:main,p:76107,tN:MainThread] Loaded converter: CONVERTER_sam_to_bigwig_0 +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:44,077 [pN:main,p:76107,tN:MainThread] Loaded converter: tabular_to_dbnsfp +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:44,077 [pN:main,p:76107,tN:MainThread] Loaded converter: tabular_to_csv +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:44,078 [pN:main,p:76107,tN:MainThread] Loaded converter: CONVERTER_uncompressed_to_gz +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:44,079 [pN:main,p:76107,tN:MainThread] Loaded converter: CONVERTER_gz_to_uncompressed +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:44,081 [pN:main,p:76107,tN:MainThread] Loaded converter: CONVERTER_interval_to_bgzip_0 +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:44,081 [pN:main,p:76107,tN:MainThread] Loaded converter: CONVERTER_vcf_to_vcf_bgzip_0 +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:44,083 [pN:main,p:76107,tN:MainThread] Loaded converter: CONVERTER_interval_to_tabix_0 +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:44,083 [pN:main,p:76107,tN:MainThread] Loaded converter: CONVERTER_bed_gff_or_vcf_to_bigwig_0 +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:44,084 [pN:main,p:76107,tN:MainThread] Loaded converter: CONVERTER_uncompressed_to_gz +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:44,085 [pN:main,p:76107,tN:MainThread] Loaded converter: CONVERTER_bcf_uncompressed_to_bcf +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:44,086 [pN:main,p:76107,tN:MainThread] Loaded converter: CONVERTER_bcf_uncompressed_to_bcf +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:44,087 [pN:main,p:76107,tN:MainThread] Loaded converter: CONVERTER_wig_to_bigwig +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:44,087 [pN:main,p:76107,tN:MainThread] Loaded converter: CONVERTER_wiggle_to_interval_0 +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:44,088 [pN:main,p:76107,tN:MainThread] Loaded converter: CONVERTER_vcf_bgzip_to_tabix_0 +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:44,089 [pN:main,p:76107,tN:MainThread] Loaded converter: CONVERTER_gz_to_uncompressed +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:44,089 [pN:main,p:76107,tN:MainThread] Loaded converter: lped2fpedconvert +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:44,090 [pN:main,p:76107,tN:MainThread] Loaded converter: lped2pbedconvert +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:44,091 [pN:main,p:76107,tN:MainThread] Loaded converter: pbed2lpedconvert +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:44,091 [pN:main,p:76107,tN:MainThread] Loaded converter: pbed2ldindepconvert +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:44,092 [pN:main,p:76107,tN:MainThread] Loaded converter: CONVERTER_uncompressed_to_gz +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:44,093 [pN:main,p:76107,tN:MainThread] Loaded converter: CONVERTER_gz_to_uncompressed +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:44,094 [pN:main,p:76107,tN:MainThread] Loaded converter: CONVERTER_biom +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:44,095 [pN:main,p:76107,tN:MainThread] Loaded converter: CONVERTER_biom +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:44,098 [pN:main,p:76107,tN:MainThread] Loaded converter: CONVERTER_molecules +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:44,102 [pN:main,p:76107,tN:MainThread] Loaded converter: CONVERTER_molecules +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:44,105 [pN:main,p:76107,tN:MainThread] Loaded converter: CONVERTER_molecules +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:44,105 [pN:main,p:76107,tN:MainThread] Loaded converter: CONVERTER_SMILES_to_MOL +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:44,109 [pN:main,p:76107,tN:MainThread] Loaded converter: CONVERTER_molecules +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:44,110 [pN:main,p:76107,tN:MainThread] Loaded converter: CONVERTER_smiles_to_smiles +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:44,113 [pN:main,p:76107,tN:MainThread] Loaded converter: CONVERTER_molecules +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:44,116 [pN:main,p:76107,tN:MainThread] Loaded converter: CONVERTER_molecules +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:44,119 [pN:main,p:76107,tN:MainThread] Loaded converter: CONVERTER_molecules +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:44,122 [pN:main,p:76107,tN:MainThread] Loaded converter: CONVERTER_molecules +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:44,125 [pN:main,p:76107,tN:MainThread] Loaded converter: CONVERTER_molecules +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:44,128 [pN:main,p:76107,tN:MainThread] Loaded converter: CONVERTER_molecules +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:44,129 [pN:main,p:76107,tN:MainThread] Loaded converter: CONVERTER_inchi_to_mol +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:44,132 [pN:main,p:76107,tN:MainThread] Loaded converter: CONVERTER_molecules +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:44,136 [pN:main,p:76107,tN:MainThread] Loaded converter: CONVERTER_molecules +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:44,139 [pN:main,p:76107,tN:MainThread] Loaded converter: CONVERTER_molecules +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:44,142 [pN:main,p:76107,tN:MainThread] Loaded converter: CONVERTER_molecules +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:44,145 [pN:main,p:76107,tN:MainThread] Loaded converter: CONVERTER_molecules +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:44,148 [pN:main,p:76107,tN:MainThread] Loaded converter: CONVERTER_molecules +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:44,151 [pN:main,p:76107,tN:MainThread] Loaded converter: CONVERTER_molecules +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:44,155 [pN:main,p:76107,tN:MainThread] Loaded converter: CONVERTER_molecules +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:44,158 [pN:main,p:76107,tN:MainThread] Loaded converter: CONVERTER_molecules +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:44,161 [pN:main,p:76107,tN:MainThread] Loaded converter: CONVERTER_molecules +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:44,162 [pN:main,p:76107,tN:MainThread] Loaded converter: CONVERTER_mol2_to_mol +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:44,165 [pN:main,p:76107,tN:MainThread] Loaded converter: CONVERTER_molecules +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:44,166 [pN:main,p:76107,tN:MainThread] Loaded converter: CONVERTER_cml_to_smiles +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:44,169 [pN:main,p:76107,tN:MainThread] Loaded converter: CONVERTER_molecules +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:44,172 [pN:main,p:76107,tN:MainThread] Loaded converter: CONVERTER_molecules +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:44,175 [pN:main,p:76107,tN:MainThread] Loaded converter: CONVERTER_molecules +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:44,176 [pN:main,p:76107,tN:MainThread] Loaded converter: CONVERTER_Pdb_to_Gro_0 +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:44,177 [pN:main,p:76107,tN:MainThread] Loaded converter: CONVERTER_mdconvert +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:44,178 [pN:main,p:76107,tN:MainThread] Loaded converter: CONVERTER_mdconvert +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:44,180 [pN:main,p:76107,tN:MainThread] Loaded converter: CONVERTER_mdconvert +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:44,181 [pN:main,p:76107,tN:MainThread] Loaded converter: CONVERTER_mdconvert +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:44,182 [pN:main,p:76107,tN:MainThread] Loaded converter: CONVERTER_mdconvert +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:44,183 [pN:main,p:76107,tN:MainThread] Loaded converter: CONVERTER_mdconvert +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:44,184 [pN:main,p:76107,tN:MainThread] Loaded converter: CONVERTER_Gro_to_Pdb_0 +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:44,185 [pN:main,p:76107,tN:MainThread] Loaded converter: CONVERTER_ref_to_seq_taxomony +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:44,185 [pN:main,p:76107,tN:MainThread] Loaded converter: CONVERTER_neostorezip_to_neostore +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:44,186 [pN:main,p:76107,tN:MainThread] Loaded external metadata tool: __SET_METADATA__ +galaxy.tools.special_tools DEBUG 2024-02-23 13:24:44,187 [pN:main,p:76107,tN:MainThread] Loaded history export tool: __EXPORT_HISTORY__ +galaxy.tools.special_tools DEBUG 2024-02-23 13:24:44,188 [pN:main,p:76107,tN:MainThread] Loaded history export to uri tool: __EXPORT_HISTORY_TO_URI__ +galaxy.tools.special_tools DEBUG 2024-02-23 13:24:44,188 [pN:main,p:76107,tN:MainThread] Loaded history import tool: __IMPORT_HISTORY__ +galaxy.tools.special_tools DEBUG 2024-02-23 13:24:44,189 [pN:main,p:76107,tN:MainThread] Loaded data fetch tool: __DATA_FETCH__ +galaxy.visualization.plugins.registry INFO 2024-02-23 13:24:44,190 [pN:main,p:76107,tN:MainThread] VisualizationsRegistry, loaded plugin: PCA_3Dplot +galaxy.visualization.plugins.registry INFO 2024-02-23 13:24:44,190 [pN:main,p:76107,tN:MainThread] VisualizationsRegistry, loaded plugin: aequatus +galaxy.visualization.plugins.registry INFO 2024-02-23 13:24:44,190 [pN:main,p:76107,tN:MainThread] VisualizationsRegistry, loaded plugin: annotate_image +galaxy.visualization.plugins.config_parser INFO 2024-02-23 13:24:44,191 [pN:main,p:76107,tN:MainThread] template syntax is deprecated: use entry_point instead +galaxy.visualization.plugins.registry INFO 2024-02-23 13:24:44,191 [pN:main,p:76107,tN:MainThread] VisualizationsRegistry, loaded plugin: chiraviz +galaxy.visualization.plugins.config_parser INFO 2024-02-23 13:24:44,192 [pN:main,p:76107,tN:MainThread] Visualizations plugin disabled: Circster. Skipping... +galaxy.visualization.plugins.config_parser INFO 2024-02-23 13:24:44,192 [pN:main,p:76107,tN:MainThread] template syntax is deprecated: use entry_point instead +galaxy.visualization.plugins.registry INFO 2024-02-23 13:24:44,192 [pN:main,p:76107,tN:MainThread] VisualizationsRegistry, loaded plugin: csg +galaxy.visualization.plugins.registry INFO 2024-02-23 13:24:44,193 [pN:main,p:76107,tN:MainThread] VisualizationsRegistry, loaded plugin: cytoscape +galaxy.visualization.plugins.registry INFO 2024-02-23 13:24:44,193 [pN:main,p:76107,tN:MainThread] VisualizationsRegistry, loaded plugin: drawrna +galaxy.visualization.plugins.registry INFO 2024-02-23 13:24:44,194 [pN:main,p:76107,tN:MainThread] VisualizationsRegistry, loaded plugin: editor +galaxy.visualization.plugins.registry INFO 2024-02-23 13:24:44,195 [pN:main,p:76107,tN:MainThread] VisualizationsRegistry, loaded plugin: example +galaxy.visualization.plugins.config_parser INFO 2024-02-23 13:24:44,195 [pN:main,p:76107,tN:MainThread] template syntax is deprecated: use entry_point instead +galaxy.visualization.plugins.registry INFO 2024-02-23 13:24:44,196 [pN:main,p:76107,tN:MainThread] VisualizationsRegistry, loaded plugin: fits_image_viewer +galaxy.visualization.plugins.config_parser INFO 2024-02-23 13:24:44,196 [pN:main,p:76107,tN:MainThread] template syntax is deprecated: use entry_point instead +galaxy.visualization.plugins.registry INFO 2024-02-23 13:24:44,196 [pN:main,p:76107,tN:MainThread] VisualizationsRegistry, loaded plugin: graphviz +galaxy.visualization.plugins.registry INFO 2024-02-23 13:24:44,197 [pN:main,p:76107,tN:MainThread] VisualizationsRegistry, loaded plugin: h5web +galaxy.visualization.plugins.registry INFO 2024-02-23 13:24:44,198 [pN:main,p:76107,tN:MainThread] VisualizationsRegistry, loaded plugin: heatmap_cluster +galaxy.visualization.plugins.registry INFO 2024-02-23 13:24:44,200 [pN:main,p:76107,tN:MainThread] VisualizationsRegistry, loaded plugin: heatmap_default +galaxy.visualization.plugins.config_parser INFO 2024-02-23 13:24:44,200 [pN:main,p:76107,tN:MainThread] template syntax is deprecated: use entry_point instead +galaxy.visualization.plugins.registry INFO 2024-02-23 13:24:44,200 [pN:main,p:76107,tN:MainThread] VisualizationsRegistry, loaded plugin: hivtrace +galaxy.visualization.plugins.config_parser INFO 2024-02-23 13:24:44,200 [pN:main,p:76107,tN:MainThread] template syntax is deprecated: use entry_point instead +galaxy.visualization.plugins.registry INFO 2024-02-23 13:24:44,200 [pN:main,p:76107,tN:MainThread] VisualizationsRegistry, loaded plugin: hyphyvision +galaxy.visualization.plugins.registry INFO 2024-02-23 13:24:44,202 [pN:main,p:76107,tN:MainThread] VisualizationsRegistry, loaded plugin: jqplot_bar +galaxy.visualization.plugins.registry INFO 2024-02-23 13:24:44,203 [pN:main,p:76107,tN:MainThread] VisualizationsRegistry, loaded plugin: jqplot_box +galaxy.visualization.plugins.registry INFO 2024-02-23 13:24:44,204 [pN:main,p:76107,tN:MainThread] VisualizationsRegistry, loaded plugin: jqplot_histogram +galaxy.visualization.plugins.registry INFO 2024-02-23 13:24:44,205 [pN:main,p:76107,tN:MainThread] VisualizationsRegistry, loaded plugin: jqplot_line +galaxy.visualization.plugins.registry INFO 2024-02-23 13:24:44,207 [pN:main,p:76107,tN:MainThread] VisualizationsRegistry, loaded plugin: jqplot_scatter +galaxy.visualization.plugins.config_parser INFO 2024-02-23 13:24:44,207 [pN:main,p:76107,tN:MainThread] template syntax is deprecated: use entry_point instead +galaxy.visualization.plugins.registry INFO 2024-02-23 13:24:44,207 [pN:main,p:76107,tN:MainThread] VisualizationsRegistry, loaded plugin: audio_player +galaxy.visualization.plugins.config_parser INFO 2024-02-23 13:24:44,207 [pN:main,p:76107,tN:MainThread] template syntax is deprecated: use entry_point instead +galaxy.visualization.plugins.registry INFO 2024-02-23 13:24:44,208 [pN:main,p:76107,tN:MainThread] VisualizationsRegistry, loaded plugin: video_player +galaxy.visualization.plugins.registry INFO 2024-02-23 13:24:44,208 [pN:main,p:76107,tN:MainThread] VisualizationsRegistry, loaded plugin: msa +galaxy.visualization.plugins.config_parser INFO 2024-02-23 13:24:44,209 [pN:main,p:76107,tN:MainThread] template syntax is deprecated: use entry_point instead +galaxy.visualization.plugins.registry INFO 2024-02-23 13:24:44,209 [pN:main,p:76107,tN:MainThread] VisualizationsRegistry, loaded plugin: mvpapp +galaxy.visualization.plugins.registry INFO 2024-02-23 13:24:44,209 [pN:main,p:76107,tN:MainThread] VisualizationsRegistry, loaded plugin: ngl +galaxy.visualization.plugins.registry INFO 2024-02-23 13:24:44,210 [pN:main,p:76107,tN:MainThread] VisualizationsRegistry, loaded plugin: nora +galaxy.visualization.plugins.registry INFO 2024-02-23 13:24:44,212 [pN:main,p:76107,tN:MainThread] VisualizationsRegistry, loaded plugin: nvd3_bar +galaxy.visualization.plugins.registry INFO 2024-02-23 13:24:44,213 [pN:main,p:76107,tN:MainThread] VisualizationsRegistry, loaded plugin: nvd3_bar_stacked +galaxy.visualization.plugins.registry INFO 2024-02-23 13:24:44,214 [pN:main,p:76107,tN:MainThread] VisualizationsRegistry, loaded plugin: nvd3_histogram +galaxy.visualization.plugins.registry INFO 2024-02-23 13:24:44,215 [pN:main,p:76107,tN:MainThread] VisualizationsRegistry, loaded plugin: nvd3_histogram_discrete +galaxy.visualization.plugins.registry INFO 2024-02-23 13:24:44,217 [pN:main,p:76107,tN:MainThread] VisualizationsRegistry, loaded plugin: nvd3_horizontal +galaxy.visualization.plugins.registry INFO 2024-02-23 13:24:44,218 [pN:main,p:76107,tN:MainThread] VisualizationsRegistry, loaded plugin: nvd3_horizontal_stacked +galaxy.visualization.plugins.registry INFO 2024-02-23 13:24:44,219 [pN:main,p:76107,tN:MainThread] VisualizationsRegistry, loaded plugin: nvd3_line +galaxy.visualization.plugins.registry INFO 2024-02-23 13:24:44,221 [pN:main,p:76107,tN:MainThread] VisualizationsRegistry, loaded plugin: nvd3_line_focus +galaxy.visualization.plugins.registry INFO 2024-02-23 13:24:44,223 [pN:main,p:76107,tN:MainThread] VisualizationsRegistry, loaded plugin: nvd3_pie +galaxy.visualization.plugins.registry INFO 2024-02-23 13:24:44,226 [pN:main,p:76107,tN:MainThread] VisualizationsRegistry, loaded plugin: nvd3_scatter +galaxy.visualization.plugins.registry INFO 2024-02-23 13:24:44,231 [pN:main,p:76107,tN:MainThread] VisualizationsRegistry, loaded plugin: nvd3_stackedarea +galaxy.visualization.plugins.registry INFO 2024-02-23 13:24:44,234 [pN:main,p:76107,tN:MainThread] VisualizationsRegistry, loaded plugin: nvd3_stackedarea_full +galaxy.visualization.plugins.registry INFO 2024-02-23 13:24:44,235 [pN:main,p:76107,tN:MainThread] VisualizationsRegistry, loaded plugin: nvd3_stackedarea_stream +galaxy.visualization.plugins.registry INFO 2024-02-23 13:24:44,236 [pN:main,p:76107,tN:MainThread] VisualizationsRegistry, loaded plugin: openlayers +galaxy.visualization.plugins.registry INFO 2024-02-23 13:24:44,237 [pN:main,p:76107,tN:MainThread] VisualizationsRegistry, loaded plugin: openseadragon +galaxy.visualization.plugins.registry INFO 2024-02-23 13:24:44,237 [pN:main,p:76107,tN:MainThread] VisualizationsRegistry, loaded plugin: phylocanvas +galaxy.visualization.plugins.registry INFO 2024-02-23 13:24:44,240 [pN:main,p:76107,tN:MainThread] VisualizationsRegistry, loaded plugin: phyloviz +galaxy.visualization.plugins.registry INFO 2024-02-23 13:24:44,240 [pN:main,p:76107,tN:MainThread] VisualizationsRegistry, loaded plugin: pv +galaxy.visualization.plugins.registry INFO 2024-02-23 13:24:44,241 [pN:main,p:76107,tN:MainThread] VisualizationsRegistry, loaded plugin: scatterplot +galaxy.visualization.plugins.config_parser INFO 2024-02-23 13:24:44,241 [pN:main,p:76107,tN:MainThread] Visualizations plugin disabled: Sweepster. Skipping... +galaxy.visualization.plugins.registry INFO 2024-02-23 13:24:44,241 [pN:main,p:76107,tN:MainThread] VisualizationsRegistry, loaded plugin: trackster +galaxy.visualization.plugins.registry INFO 2024-02-23 13:24:44,242 [pN:main,p:76107,tN:MainThread] VisualizationsRegistry, loaded plugin: ts_visjs +galaxy.visualization.plugins.config_parser INFO 2024-02-23 13:24:44,242 [pN:main,p:76107,tN:MainThread] template syntax is deprecated: use entry_point instead +galaxy.visualization.plugins.registry INFO 2024-02-23 13:24:44,242 [pN:main,p:76107,tN:MainThread] VisualizationsRegistry, loaded plugin: unipept +galaxy.visualization.plugins.registry INFO 2024-02-23 13:24:44,242 [pN:main,p:76107,tN:MainThread] VisualizationsRegistry, loaded plugin: venn +galaxy.tours._impl INFO 2024-02-23 13:24:44,258 [pN:main,p:76107,tN:MainThread] Loaded tour 'core.galaxy_ui' +galaxy.tours._impl INFO 2024-02-23 13:24:44,269 [pN:main,p:76107,tN:MainThread] Loaded tour 'core.deferred' +galaxy.tours._impl INFO 2024-02-23 13:24:44,277 [pN:main,p:76107,tN:MainThread] Loaded tour 'core.history' +galaxy.tours._impl INFO 2024-02-23 13:24:44,284 [pN:main,p:76107,tN:MainThread] Loaded tour 'core.windows' +galaxy.workflow.scheduling_manager INFO 2024-02-23 13:24:44,287 [pN:main,p:76107,tN:MainThread] No workflow schedulers plugin config file defined, using default scheduler. +galaxy.web_stack.handlers INFO 2024-02-23 13:24:44,287 [pN:main,p:76107,tN:MainThread] WorkflowSchedulingManager: No job handler assignment method is set, defaulting to 'HANDLER_ASSIGNMENT_METHODS.DB_SKIP_LOCKED', set the `assign_with` attribute on <handlers> to override the default +galaxy.workflow.scheduling_manager DEBUG 2024-02-23 13:24:44,288 [pN:main,p:76107,tN:MainThread] Starting workflow schedulers +galaxy.app INFO 2024-02-23 13:24:44,289 [pN:main,p:76107,tN:MainThread] Galaxy app startup finished (2168.414 ms) +galaxy.web.framework.base DEBUG 2024-02-23 13:24:44,306 [pN:main,p:76107,tN:MainThread] Enabling 'user' controller, class: User +galaxy.web.framework.base DEBUG 2024-02-23 13:24:44,306 [pN:main,p:76107,tN:MainThread] Enabling 'data_manager' controller, class: DataManager +galaxy.web.framework.base DEBUG 2024-02-23 13:24:44,306 [pN:main,p:76107,tN:MainThread] Enabling 'async' controller, class: ASync +galaxy.web.framework.base DEBUG 2024-02-23 13:24:44,307 [pN:main,p:76107,tN:MainThread] Enabling 'tag' controller, class: TagsController +galaxy.web.framework.base DEBUG 2024-02-23 13:24:44,310 [pN:main,p:76107,tN:MainThread] Enabling 'page' controller, class: PageController +galaxy.web.framework.base DEBUG 2024-02-23 13:24:44,310 [pN:main,p:76107,tN:MainThread] Enabling 'root' controller, class: RootController +galaxy.web.framework.base DEBUG 2024-02-23 13:24:44,310 [pN:main,p:76107,tN:MainThread] Enabling 'tool_runner' controller, class: ToolRunner +galaxy.web.framework.base DEBUG 2024-02-23 13:24:44,311 [pN:main,p:76107,tN:MainThread] Enabling 'error' controller, class: Error +galaxy.web.framework.base DEBUG 2024-02-23 13:24:44,311 [pN:main,p:76107,tN:MainThread] Enabling 'forms' controller, class: Forms +galaxy.web.framework.base DEBUG 2024-02-23 13:24:44,320 [pN:main,p:76107,tN:MainThread] Enabling 'admin_toolshed' controller, class: AdminGalaxy +galaxy.web.framework.base DEBUG 2024-02-23 13:24:44,320 [pN:main,p:76107,tN:MainThread] Enabling 'admin_toolshed' controller, class: AdminToolshed +galaxy.web.framework.base DEBUG 2024-02-23 13:24:44,321 [pN:main,p:76107,tN:MainThread] Enabling 'visualization' controller, class: VisualizationController +galaxy.web.framework.base DEBUG 2024-02-23 13:24:44,321 [pN:main,p:76107,tN:MainThread] Enabling 'shed_tool_static' controller, class: ShedToolStatic +galaxy.web.framework.base DEBUG 2024-02-23 13:24:44,322 [pN:main,p:76107,tN:MainThread] Enabling 'authnz' controller, class: JSAppLauncher +galaxy.web.framework.base DEBUG 2024-02-23 13:24:44,322 [pN:main,p:76107,tN:MainThread] Enabling 'authnz' controller, class: OIDC +galaxy.web.framework.base DEBUG 2024-02-23 13:24:44,323 [pN:main,p:76107,tN:MainThread] Enabling 'workflow' controller, class: WorkflowController +galaxy.web.framework.base DEBUG 2024-02-23 13:24:44,324 [pN:main,p:76107,tN:MainThread] Enabling 'history' controller, class: HistoryController +galaxy.web.framework.base DEBUG 2024-02-23 13:24:44,342 [pN:main,p:76107,tN:MainThread] Enabling 'dataset' controller, class: DatasetInterface +galaxy.web.framework.base DEBUG 2024-02-23 13:24:44,342 [pN:main,p:76107,tN:MainThread] Enabling 'admin' controller, class: AdminGalaxy +galaxy.web.framework.base DEBUG 2024-02-23 13:24:44,776 [pN:main,p:76107,tN:MainThread] Enabling 'library_datasets' API controller, class: LibraryDatasetsController +galaxy.web.framework.base DEBUG 2024-02-23 13:24:44,872 [pN:main,p:76107,tN:MainThread] Enabling 'jobs' API controller, class: JobController +galaxy.web.framework.base DEBUG 2024-02-23 13:24:44,946 [pN:main,p:76107,tN:MainThread] Enabling 'job_files' API controller, class: JobFilesAPIController +galaxy.web.framework.base DEBUG 2024-02-23 13:24:44,976 [pN:main,p:76107,tN:MainThread] Enabling 'toolshed' API controller, class: ToolShedController +galaxy.web.framework.base DEBUG 2024-02-23 13:24:44,986 [pN:main,p:76107,tN:MainThread] Enabling 'tools' API controller, class: ToolsController +galaxy.web.framework.base DEBUG 2024-02-23 13:24:45,062 [pN:main,p:76107,tN:MainThread] Enabling 'trs_consumer' API controller, class: TrsConsumeAPIController +galaxy.web.framework.base DEBUG 2024-02-23 13:24:45,063 [pN:main,p:76107,tN:MainThread] Enabling 'history_dataset_extended_metadata' API controller, class: HistoryDatasetExtendMetadataController +galaxy.web.framework.base DEBUG 2024-02-23 13:24:45,063 [pN:main,p:76107,tN:MainThread] Enabling 'library_dataset_extended_metadata' API controller, class: LibraryDatasetExtendMetadataController +galaxy.web.framework.base DEBUG 2024-02-23 13:24:45,063 [pN:main,p:76107,tN:MainThread] Enabling 'container_resolution' API controller, class: ContainerResolutionAPIController +galaxy.web.framework.base DEBUG 2024-02-23 13:24:45,064 [pN:main,p:76107,tN:MainThread] Enabling 'job_ports' API controller, class: JobPortsAPIController +galaxy.web.framework.base DEBUG 2024-02-23 13:24:45,064 [pN:main,p:76107,tN:MainThread] Enabling 'tool_dependencies' API controller, class: ToolDependenciesAPIController +galaxy.web.framework.base DEBUG 2024-02-23 13:24:45,152 [pN:main,p:76107,tN:MainThread] Enabling 'history_content_provenance' API controller, class: HDAProvenanceController +galaxy.web.framework.base DEBUG 2024-02-23 13:24:45,152 [pN:main,p:76107,tN:MainThread] Enabling 'ldda_provenance' API controller, class: LDDAProvenanceController +galaxy.web.framework.base DEBUG 2024-02-23 13:24:45,152 [pN:main,p:76107,tN:MainThread] Enabling 'tool_entry_points' API controller, class: ToolEntryPointsAPIController +galaxy.web.framework.base DEBUG 2024-02-23 13:24:45,236 [pN:main,p:76107,tN:MainThread] Enabling 'authenticate' API controller, class: AuthenticationController +galaxy.web.framework.base DEBUG 2024-02-23 13:24:45,497 [pN:main,p:76107,tN:MainThread] Enabling 'trs_search' API controller, class: TrsSearchAPIController +galaxy.web.framework.base DEBUG 2024-02-23 13:24:45,530 [pN:main,p:76107,tN:MainThread] Enabling 'tool_shed_repositories' API controller, class: ToolShedRepositoriesController +galaxy.web.framework.base DEBUG 2024-02-23 13:24:45,646 [pN:main,p:76107,tN:MainThread] Enabling 'forms' API controller, class: FormDefinitionAPIController +galaxy.web.framework.base DEBUG 2024-02-23 13:24:45,819 [pN:main,p:76107,tN:MainThread] Enabling 'workflows' API controller, class: WorkflowsAPIController +galaxy.web.framework.base DEBUG 2024-02-23 13:24:45,819 [pN:main,p:76107,tN:MainThread] Enabling 'uploads' API controller, class: UploadsAPIController +galaxy.web.framework.base DEBUG 2024-02-23 13:24:46,315 [pN:main,p:76107,tN:MainThread] Enabling 'history_annotations' API controller, class: HistoryAnnotationsController +galaxy.web.framework.base DEBUG 2024-02-23 13:24:46,315 [pN:main,p:76107,tN:MainThread] Enabling 'history_content_annotations' API controller, class: HistoryContentAnnotationsController +galaxy.web.framework.base DEBUG 2024-02-23 13:24:46,315 [pN:main,p:76107,tN:MainThread] Enabling 'workflow_annotations' API controller, class: WorkflowAnnotationsController +galaxy.web.framework.base DEBUG 2024-02-23 13:24:46,360 [pN:main,p:76107,tN:MainThread] Enabling 'visualizations' API controller, class: VisualizationsController +galaxy.web.framework.base DEBUG 2024-02-23 13:24:46,361 [pN:main,p:76107,tN:MainThread] Enabling 'sanitize_allow' API controller, class: SanitizeAllowController +galaxy.web.framework.base DEBUG 2024-02-23 13:24:46,361 [pN:main,p:76107,tN:MainThread] Enabling 'page_revisions' API controller, class: PageRevisionsController +galaxy.web.framework.base DEBUG 2024-02-23 13:24:46,432 [pN:main,p:76107,tN:MainThread] Enabling 'library_contents' API controller, class: LibraryContentsController +galaxy.web.framework.base DEBUG 2024-02-23 13:24:46,551 [pN:main,p:76107,tN:MainThread] Enabling 'users' API controller, class: UserAPIController +galaxy.web.framework.base DEBUG 2024-02-23 13:24:46,552 [pN:main,p:76107,tN:MainThread] Enabling 'cloudauthz' API controller, class: CloudAuthzController +galaxy.web.framework.base DEBUG 2024-02-23 13:24:46,552 [pN:main,p:76107,tN:MainThread] Enabling 'webhooks' API controller, class: WebhooksController +galaxy.web.framework.base DEBUG 2024-02-23 13:24:46,626 [pN:main,p:76107,tN:MainThread] Enabling 'plugins' API controller, class: PluginsController +galaxy.web.framework.base DEBUG 2024-02-23 13:24:46,662 [pN:main,p:76107,tN:MainThread] Enabling 'dynamic_tools' API controller, class: DynamicToolsController +galaxy.webapps.util DEBUG 2024-02-23 13:24:46,945 [pN:main,p:76107,tN:MainThread] Enabling 'paste.httpexceptions' middleware +galaxy.webapps.util DEBUG 2024-02-23 13:24:46,946 [pN:main,p:76107,tN:MainThread] Enabling 'RemoteUser' middleware +galaxy.webapps.util DEBUG 2024-02-23 13:24:46,946 [pN:main,p:76107,tN:MainThread] Enabling 'ErrorMiddleware' middleware +galaxy.webapps.util DEBUG 2024-02-23 13:24:46,946 [pN:main,p:76107,tN:MainThread] Enabling 'TusMiddleware' middleware +galaxy.webapps.util DEBUG 2024-02-23 13:24:46,946 [pN:main,p:76107,tN:MainThread] Enabling 'XForwardedHostMiddleware' middleware +galaxy.webapps.util DEBUG 2024-02-23 13:24:46,946 [pN:main,p:76107,tN:MainThread] Enabling 'RequestIDMiddleware' middleware +galaxy.webapps.util DEBUG 2024-02-23 13:24:46,946 [pN:main,p:76107,tN:MainThread] Enabling 'build_url_map' middleware +galaxy.webapps.galaxy.buildapp DEBUG 2024-02-23 13:24:46,946 [pN:main,p:76107,tN:MainThread] Prior to webapp return, Galaxy thread <_MainThread(MainThread, started 139763045857088)> is alive. +galaxy.web_stack DEBUG 2024-02-23 13:24:48,550 [pN:main.1,p:76310,tN:Thread-2] server_name set to: main.1 +galaxy.jobs.manager DEBUG 2024-02-23 13:24:48,552 [pN:main.1,p:76310,tN:Thread-2] Initializing job handler +galaxy.jobs INFO 2024-02-23 13:24:48,552 [pN:main.1,p:76310,tN:Thread-2] Handler 'main.1' will load all configured runner plugins +galaxy.jobs.runners.state_handler_factory DEBUG 2024-02-23 13:24:48,561 [pN:main.1,p:76310,tN:Thread-2] Loaded 'failure' state handler from module galaxy.jobs.runners.state_handlers.resubmit +galaxy.jobs DEBUG 2024-02-23 13:24:48,562 [pN:main.1,p:76310,tN:Thread-2] Loaded job runner 'galaxy.jobs.runners.local:LocalJobRunner' as 'local' +galaxy.jobs.handler DEBUG 2024-02-23 13:24:48,562 [pN:main.1,p:76310,tN:Thread-2] Loaded job runners plugins: local +galaxy.jobs.runners DEBUG 2024-02-23 13:24:48,562 [pN:main.1,p:76310,tN:Thread-2] Starting 4 LocalRunner workers +galaxy.jobs.handler DEBUG 2024-02-23 13:24:48,577 [pN:main.1,p:76310,tN:Thread-2] Handler queue starting for jobs assigned to handler: main.1 +galaxy.jobs.handler INFO 2024-02-23 13:24:48,615 [pN:main.1,p:76310,tN:JobHandlerQueue.monitor_thread] Handler job grabber initialized with 'HANDLER_ASSIGNMENT_METHODS.DB_SKIP_LOCKED' assignment method for handler 'main.1', tag(s): +galaxy.jobs.handler INFO 2024-02-23 13:24:48,617 [pN:main.1,p:76310,tN:Thread-2] job handler queue started +galaxy.jobs.handler INFO 2024-02-23 13:24:48,623 [pN:main.1,p:76310,tN:Thread-2] job handler stop queue started +galaxy.jobs.handler INFO 2024-02-23 13:24:48,626 [pN:main.1,p:76310,tN:WorkflowRequestMonitor.monitor_thread] Handler job grabber initialized with 'HANDLER_ASSIGNMENT_METHODS.DB_SKIP_LOCKED' assignment method for handler 'main.1', tag(s): _default_, None +galaxy.queue_worker INFO 2024-02-23 13:24:48,633 [pN:main.1,p:76310,tN:Thread-2] Binding and starting galaxy control worker for main.1 +galaxy.queue_worker DEBUG 2024-02-23 13:24:48,648 [pN:main.1,p:76310,tN:Thread-2] Executing toolbox reload on 'main.1' +galaxy.util WARNING 2024-02-23 13:24:48,716 [pN:main.1,p:76310,tN:Thread-2] directory not found: /scratch/rico/galaxy/lib/galaxy/util/../../../config/plugins/activities +galaxy.tools WARNING 2024-02-23 13:24:48,730 [pN:main.1,p:76310,tN:Thread-2] The default shed tool config file (/tmp/tmpu7x63f_i/shed_tool_conf.xml) has been added to the tool_config_file option, if this is not the desired behavior, please set shed_tool_config_file to your primary shed-enabled tool config file +galaxy.tool_util.toolbox.base INFO 2024-02-23 13:24:48,730 [pN:main.1,p:76310,tN:Thread-2] Parsing the tool configuration /tmp/tmpu7x63f_i/tool_conf.xml +galaxy.tool_util.toolbox.base DEBUG 2024-02-23 13:24:48,731 [pN:main.1,p:76310,tN:Thread-2] Tool path for tool configuration /tmp/tmpu7x63f_i/tool_conf.xml is None +galaxy.tools WARNING 2024-02-23 13:24:48,731 [pN:main.1,p:76310,tN:Thread-2] The default shed tool config file (/tmp/tmpu7x63f_i/shed_tool_conf.xml) has been added to the tool_config_file option, if this is not the desired behavior, please set shed_tool_config_file to your primary shed-enabled tool config file +galaxy.tool_util.toolbox.base INFO 2024-02-23 13:24:48,731 [pN:main.1,p:76310,tN:Thread-2] Parsing the tool configuration /tmp/tmpu7x63f_i/shed_tools_conf.xml +galaxy.tool_util.toolbox.base DEBUG 2024-02-23 13:24:48,732 [pN:main.1,p:76310,tN:Thread-2] Tool path for shed tool configuration /tmp/tmpu7x63f_i/shed_tools_conf.xml is /tmp/tmpu7x63f_i/shed_tools +galaxy.tools WARNING 2024-02-23 13:24:48,732 [pN:main.1,p:76310,tN:Thread-2] The default shed tool config file (/tmp/tmpu7x63f_i/shed_tool_conf.xml) has been added to the tool_config_file option, if this is not the desired behavior, please set shed_tool_config_file to your primary shed-enabled tool config file +galaxy.tool_util.toolbox.base INFO 2024-02-23 13:24:48,732 [pN:main.1,p:76310,tN:Thread-2] Parsing the tool configuration /tmp/tmpu7x63f_i/empty_tool_conf.xml +galaxy.tool_util.toolbox.base DEBUG 2024-02-23 13:24:48,732 [pN:main.1,p:76310,tN:Thread-2] Tool path for tool configuration /tmp/tmpu7x63f_i/empty_tool_conf.xml is None +galaxy.tool_util.toolbox.base DEBUG 2024-02-23 13:24:48,732 [pN:main.1,p:76310,tN:Thread-2] Reading tools from config files finished (2.373 ms) +galaxy.tool_util.toolbox.base DEBUG 2024-02-23 13:24:48,733 [pN:main.1,p:76310,tN:Thread-2] Loaded tool id: upload1, version: 1.1.7 into tool panel.. +galaxy.tool_util.toolbox.base DEBUG 2024-02-23 13:24:48,733 [pN:main.1,p:76310,tN:Thread-2] Loading tool panel finished (0.504 ms) +galaxy.tool_util.toolbox.base DEBUG 2024-02-23 13:24:48,737 [pN:main.1,p:76310,tN:Thread-2] Loaded tool id: upload1, version: 1.1.7 into tool panel.. +galaxy.tool_util.toolbox.views.edam DEBUG 2024-02-23 13:24:48,737 [pN:main.1,p:76310,tN:Thread-2] Loading EDAM tool panel finished (4.084 ms) +galaxy.tool_util.toolbox.base DEBUG 2024-02-23 13:24:48,739 [pN:main.1,p:76310,tN:Thread-2] Loaded tool id: upload1, version: 1.1.7 into tool panel.. +galaxy.tool_util.toolbox.views.edam DEBUG 2024-02-23 13:24:48,739 [pN:main.1,p:76310,tN:Thread-2] Loading EDAM tool panel finished (1.589 ms) +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:48,740 [pN:main.1,p:76310,tN:Thread-2] Loaded converter: CONVERTER_uncompressed_to_gz +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:48,740 [pN:main.1,p:76310,tN:Thread-2] Loaded converter: CONVERTER_gz_to_uncompressed +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:48,741 [pN:main.1,p:76310,tN:Thread-2] Loaded converter: CONVERTER_uncompressed_to_gz +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:48,741 [pN:main.1,p:76310,tN:Thread-2] Loaded converter: CONVERTER_gz_to_uncompressed +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:48,741 [pN:main.1,p:76310,tN:Thread-2] Loaded converter: CONVERTER_uncompressed_to_gz +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:48,742 [pN:main.1,p:76310,tN:Thread-2] Loaded converter: CONVERTER_gz_to_uncompressed +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:48,742 [pN:main.1,p:76310,tN:Thread-2] Loaded converter: CONVERTER_Bam_Bai_0 +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:48,743 [pN:main.1,p:76310,tN:Thread-2] Loaded converter: CONVERTER_bam_to_bigwig_0 +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:48,745 [pN:main.1,p:76310,tN:Thread-2] Loaded converter: CONVERTER_bam_to_qname_sorted_bam +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:48,746 [pN:main.1,p:76310,tN:Thread-2] Loaded converter: CONVERTER_bam_to_bigwig_0 +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:48,746 [pN:main.1,p:76310,tN:Thread-2] Loaded converter: CONVERTER_bam_to_coodinate_sorted_bam +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:48,746 [pN:main.1,p:76310,tN:Thread-2] Loaded converter: CONVERTER_bam_to_qname_sorted_bam +galaxy.model.database_heartbeat DEBUG 2024-02-23 13:24:48,746 [pN:main.1,p:76310,tN:database_heartbeart_main.1.thread] main.1 is config watcher +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:48,748 [pN:main.1,p:76310,tN:Thread-2] Loaded converter: CONVERTER_cram_to_bam_0 +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:48,750 [pN:main.1,p:76310,tN:Thread-2] Loaded converter: CONVERTER_bed_to_gff_0 +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:48,751 [pN:main.1,p:76310,tN:Thread-2] Loaded converter: CONVERTER_interval_to_bgzip_0 +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:48,752 [pN:main.1,p:76310,tN:Thread-2] Loaded converter: CONVERTER_interval_to_tabix_0 +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:48,752 [pN:main.1,p:76310,tN:Thread-2] Loaded converter: CONVERTER_bed_gff_or_vcf_to_bigwig_0 +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:48,753 [pN:main.1,p:76310,tN:Thread-2] Loaded converter: CONVERTER_bed_to_fli_0 +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:48,753 [pN:main.1,p:76310,tN:Thread-2] Loaded converter: CONVERTER_bedgraph_to_bigwig +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:48,753 [pN:main.1,p:76310,tN:Thread-2] Loaded converter: CONVERTER_len_to_linecount +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:48,753 [pN:main.1,p:76310,tN:Thread-2] Loaded converter: CONVERTER_parquet_to_csv +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:48,753 [pN:main.1,p:76310,tN:Thread-2] Loaded converter: bigwigtowig +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:48,753 [pN:main.1,p:76310,tN:Thread-2] Loaded converter: CONVERTER_interval_to_bgzip_0 +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:48,753 [pN:main.1,p:76310,tN:Thread-2] Loaded converter: CONVERTER_interval_to_tabix_0 +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:48,754 [pN:main.1,p:76310,tN:Thread-2] Loaded converter: CONVERTER_bed_gff_or_vcf_to_bigwig_0 +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:48,754 [pN:main.1,p:76310,tN:Thread-2] Loaded converter: csv_to_tabular +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:48,754 [pN:main.1,p:76310,tN:Thread-2] Loaded converter: tabular_to_csv +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:48,754 [pN:main.1,p:76310,tN:Thread-2] Loaded converter: CONVERTER_fasta_to_tabular +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:48,755 [pN:main.1,p:76310,tN:Thread-2] Loaded converter: CONVERTER_fasta_to_bowtie_base_index +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:48,755 [pN:main.1,p:76310,tN:Thread-2] Loaded converter: CONVERTER_fasta_to_bowtie_color_index +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:48,755 [pN:main.1,p:76310,tN:Thread-2] Loaded converter: CONVERTER_fasta_to_2bit +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:48,756 [pN:main.1,p:76310,tN:Thread-2] Loaded converter: CONVERTER_fasta_to_len +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:48,756 [pN:main.1,p:76310,tN:Thread-2] Loaded converter: CONVERTER_fasta_to_fai +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:48,757 [pN:main.1,p:76310,tN:Thread-2] Loaded converter: CONVERTER_uncompressed_to_gz +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:48,757 [pN:main.1,p:76310,tN:Thread-2] Loaded converter: CONVERTER_gz_to_uncompressed +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:48,757 [pN:main.1,p:76310,tN:Thread-2] Loaded converter: CONVERTER_fastq_to_fqtoc0 +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:48,765 [pN:main.1,p:76310,tN:Thread-2] Loaded converter: CONVERTER_uncompressed_to_gz +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:48,766 [pN:main.1,p:76310,tN:Thread-2] Loaded converter: CONVERTER_gz_to_uncompressed +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:48,766 [pN:main.1,p:76310,tN:Thread-2] Loaded converter: CONVERTER_bz2_to_uncompressed +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:48,766 [pN:main.1,p:76310,tN:Thread-2] Loaded converter: CONVERTER_fastq_to_fqtoc0 +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:48,766 [pN:main.1,p:76310,tN:Thread-2] Loaded converter: CONVERTER_uncompressed_to_gz +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:48,766 [pN:main.1,p:76310,tN:Thread-2] Loaded converter: CONVERTER_gz_to_uncompressed +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:48,766 [pN:main.1,p:76310,tN:Thread-2] Loaded converter: CONVERTER_bz2_to_uncompressed +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:48,767 [pN:main.1,p:76310,tN:Thread-2] Loaded converter: CONVERTER_fastq_to_fqtoc0 +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:48,767 [pN:main.1,p:76310,tN:Thread-2] Loaded converter: CONVERTER_uncompressed_to_gz +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:48,767 [pN:main.1,p:76310,tN:Thread-2] Loaded converter: CONVERTER_gz_to_uncompressed +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:48,767 [pN:main.1,p:76310,tN:Thread-2] Loaded converter: CONVERTER_bz2_to_uncompressed +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:48,767 [pN:main.1,p:76310,tN:Thread-2] Loaded converter: CONVERTER_fastq_to_fqtoc0 +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:48,768 [pN:main.1,p:76310,tN:Thread-2] Loaded converter: CONVERTER_uncompressed_to_gz +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:48,768 [pN:main.1,p:76310,tN:Thread-2] Loaded converter: CONVERTER_gz_to_uncompressed +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:48,768 [pN:main.1,p:76310,tN:Thread-2] Loaded converter: CONVERTER_bz2_to_uncompressed +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:48,768 [pN:main.1,p:76310,tN:Thread-2] Loaded converter: CONVERTER_fastq_to_fqtoc0 +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:48,769 [pN:main.1,p:76310,tN:Thread-2] Loaded converter: CONVERTER_uncompressed_to_gz +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:48,769 [pN:main.1,p:76310,tN:Thread-2] Loaded converter: CONVERTER_gz_to_uncompressed +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:48,769 [pN:main.1,p:76310,tN:Thread-2] Loaded converter: CONVERTER_bz2_to_uncompressed +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:48,769 [pN:main.1,p:76310,tN:Thread-2] Loaded converter: CONVERTER_gff_to_bed_0 +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:48,770 [pN:main.1,p:76310,tN:Thread-2] Loaded converter: CONVERTER_gff_to_interval_index_0 +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:48,770 [pN:main.1,p:76310,tN:Thread-2] Loaded converter: CONVERTER_bed_gff_or_vcf_to_bigwig_0 +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:48,770 [pN:main.1,p:76310,tN:Thread-2] Loaded converter: CONVERTER_gff_to_fli_0 +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:48,770 [pN:main.1,p:76310,tN:Thread-2] Loaded converter: CONVERTER_interval_to_bgzip_0 +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:48,771 [pN:main.1,p:76310,tN:Thread-2] Loaded converter: CONVERTER_interval_to_tabix_0 +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:48,771 [pN:main.1,p:76310,tN:Thread-2] Loaded converter: CONVERTER_uncompressed_to_gz +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:48,771 [pN:main.1,p:76310,tN:Thread-2] Loaded converter: CONVERTER_gz_to_uncompressed +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:48,771 [pN:main.1,p:76310,tN:Thread-2] Loaded converter: CONVERTER_bz2_to_uncompressed +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:48,771 [pN:main.1,p:76310,tN:Thread-2] Loaded converter: CONVERTER_gff_to_interval_index_0 +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:48,772 [pN:main.1,p:76310,tN:Thread-2] Loaded converter: CONVERTER_bed_gff_or_vcf_to_bigwig_0 +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:48,772 [pN:main.1,p:76310,tN:Thread-2] Loaded converter: CONVERTER_interval_to_bed_0 +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:48,772 [pN:main.1,p:76310,tN:Thread-2] Loaded converter: CONVERTER_interval_to_bedstrict_0 +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:48,773 [pN:main.1,p:76310,tN:Thread-2] Loaded converter: CONVERTER_interval_to_bed6_0 +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:48,773 [pN:main.1,p:76310,tN:Thread-2] Loaded converter: CONVERTER_interval_to_bed12_0 +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:48,773 [pN:main.1,p:76310,tN:Thread-2] Loaded converter: CONVERTER_interval_to_bgzip_0 +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:48,774 [pN:main.1,p:76310,tN:Thread-2] Loaded converter: CONVERTER_interval_to_tabix_0 +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:48,774 [pN:main.1,p:76310,tN:Thread-2] Loaded converter: CONVERTER_interval_to_bigwig_0 +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:48,774 [pN:main.1,p:76310,tN:Thread-2] Loaded converter: CONVERTER_picard_interval_list_to_bed6 +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:48,774 [pN:main.1,p:76310,tN:Thread-2] Loaded converter: CONVERTER_tar_to_directory +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:48,775 [pN:main.1,p:76310,tN:Thread-2] Loaded converter: CONVERTER_uncompressed_to_gz +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:48,775 [pN:main.1,p:76310,tN:Thread-2] Loaded converter: CONVERTER_gz_to_uncompressed +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:48,775 [pN:main.1,p:76310,tN:Thread-2] Loaded converter: CONVERTER_uncompressed_to_gz +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:48,775 [pN:main.1,p:76310,tN:Thread-2] Loaded converter: CONVERTER_gz_to_uncompressed +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:48,776 [pN:main.1,p:76310,tN:Thread-2] Loaded converter: CONVERTER_uncompressed_to_gz +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:48,776 [pN:main.1,p:76310,tN:Thread-2] Loaded converter: CONVERTER_gz_to_uncompressed +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:48,776 [pN:main.1,p:76310,tN:Thread-2] Loaded converter: CONVERTER_maf_to_fasta_0 +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:48,776 [pN:main.1,p:76310,tN:Thread-2] Loaded converter: CONVERTER_maf_to_interval_0 +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:48,776 [pN:main.1,p:76310,tN:Thread-2] Loaded converter: CONVERTER_interval_to_tabix_0 +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:48,776 [pN:main.1,p:76310,tN:Thread-2] Loaded converter: CONVERTER_interval_to_bgzip_0 +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:48,777 [pN:main.1,p:76310,tN:Thread-2] Loaded converter: CONVERTER_bed_gff_or_vcf_to_bigwig_0 +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:48,777 [pN:main.1,p:76310,tN:Thread-2] Loaded converter: CONVERTER_interval_to_bgzip_0 +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:48,777 [pN:main.1,p:76310,tN:Thread-2] Loaded converter: CONVERTER_interval_to_tabix_0 +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:48,777 [pN:main.1,p:76310,tN:Thread-2] Loaded converter: CONVERTER_sam_to_unsorted_bam +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:48,778 [pN:main.1,p:76310,tN:Thread-2] Loaded converter: CONVERTER_bam_to_coodinate_sorted_bam +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:48,778 [pN:main.1,p:76310,tN:Thread-2] Loaded converter: CONVERTER_bam_to_qname_sorted_bam +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:48,778 [pN:main.1,p:76310,tN:Thread-2] Loaded converter: CONVERTER_sam_to_bigwig_0 +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:48,778 [pN:main.1,p:76310,tN:Thread-2] Loaded converter: tabular_to_dbnsfp +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:48,778 [pN:main.1,p:76310,tN:Thread-2] Loaded converter: tabular_to_csv +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:48,779 [pN:main.1,p:76310,tN:Thread-2] Loaded converter: CONVERTER_uncompressed_to_gz +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:48,779 [pN:main.1,p:76310,tN:Thread-2] Loaded converter: CONVERTER_gz_to_uncompressed +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:48,779 [pN:main.1,p:76310,tN:Thread-2] Loaded converter: CONVERTER_interval_to_bgzip_0 +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:48,779 [pN:main.1,p:76310,tN:Thread-2] Loaded converter: CONVERTER_vcf_to_vcf_bgzip_0 +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:48,780 [pN:main.1,p:76310,tN:Thread-2] Loaded converter: CONVERTER_interval_to_tabix_0 +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:48,780 [pN:main.1,p:76310,tN:Thread-2] Loaded converter: CONVERTER_bed_gff_or_vcf_to_bigwig_0 +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:48,780 [pN:main.1,p:76310,tN:Thread-2] Loaded converter: CONVERTER_uncompressed_to_gz +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:48,781 [pN:main.1,p:76310,tN:Thread-2] Loaded converter: CONVERTER_bcf_uncompressed_to_bcf +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:48,781 [pN:main.1,p:76310,tN:Thread-2] Loaded converter: CONVERTER_bcf_uncompressed_to_bcf +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:48,781 [pN:main.1,p:76310,tN:Thread-2] Loaded converter: CONVERTER_wig_to_bigwig +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:48,781 [pN:main.1,p:76310,tN:Thread-2] Loaded converter: CONVERTER_wiggle_to_interval_0 +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:48,781 [pN:main.1,p:76310,tN:Thread-2] Loaded converter: CONVERTER_vcf_bgzip_to_tabix_0 +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:48,782 [pN:main.1,p:76310,tN:Thread-2] Loaded converter: CONVERTER_gz_to_uncompressed +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:48,782 [pN:main.1,p:76310,tN:Thread-2] Loaded converter: lped2fpedconvert +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:48,782 [pN:main.1,p:76310,tN:Thread-2] Loaded converter: lped2pbedconvert +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:48,782 [pN:main.1,p:76310,tN:Thread-2] Loaded converter: pbed2lpedconvert +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:48,782 [pN:main.1,p:76310,tN:Thread-2] Loaded converter: pbed2ldindepconvert +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:48,783 [pN:main.1,p:76310,tN:Thread-2] Loaded converter: CONVERTER_uncompressed_to_gz +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:48,783 [pN:main.1,p:76310,tN:Thread-2] Loaded converter: CONVERTER_gz_to_uncompressed +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:48,783 [pN:main.1,p:76310,tN:Thread-2] Loaded converter: CONVERTER_biom +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:48,783 [pN:main.1,p:76310,tN:Thread-2] Loaded converter: CONVERTER_biom +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:48,783 [pN:main.1,p:76310,tN:Thread-2] Loaded converter: CONVERTER_molecules +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:48,784 [pN:main.1,p:76310,tN:Thread-2] Loaded converter: CONVERTER_molecules +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:48,784 [pN:main.1,p:76310,tN:Thread-2] Loaded converter: CONVERTER_molecules +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:48,784 [pN:main.1,p:76310,tN:Thread-2] Loaded converter: CONVERTER_SMILES_to_MOL +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:48,784 [pN:main.1,p:76310,tN:Thread-2] Loaded converter: CONVERTER_molecules +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:48,784 [pN:main.1,p:76310,tN:Thread-2] Loaded converter: CONVERTER_smiles_to_smiles +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:48,785 [pN:main.1,p:76310,tN:Thread-2] Loaded converter: CONVERTER_molecules +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:48,785 [pN:main.1,p:76310,tN:Thread-2] Loaded converter: CONVERTER_molecules +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:48,785 [pN:main.1,p:76310,tN:Thread-2] Loaded converter: CONVERTER_molecules +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:48,785 [pN:main.1,p:76310,tN:Thread-2] Loaded converter: CONVERTER_molecules +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:48,785 [pN:main.1,p:76310,tN:Thread-2] Loaded converter: CONVERTER_molecules +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:48,786 [pN:main.1,p:76310,tN:Thread-2] Loaded converter: CONVERTER_molecules +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:48,786 [pN:main.1,p:76310,tN:Thread-2] Loaded converter: CONVERTER_inchi_to_mol +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:48,787 [pN:main.1,p:76310,tN:Thread-2] Loaded converter: CONVERTER_molecules +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:48,787 [pN:main.1,p:76310,tN:Thread-2] Loaded converter: CONVERTER_molecules +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:48,787 [pN:main.1,p:76310,tN:Thread-2] Loaded converter: CONVERTER_molecules +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:48,787 [pN:main.1,p:76310,tN:Thread-2] Loaded converter: CONVERTER_molecules +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:48,787 [pN:main.1,p:76310,tN:Thread-2] Loaded converter: CONVERTER_molecules +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:48,799 [pN:main.1,p:76310,tN:Thread-2] Loaded converter: CONVERTER_molecules +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:48,799 [pN:main.1,p:76310,tN:Thread-2] Loaded converter: CONVERTER_molecules +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:48,800 [pN:main.1,p:76310,tN:Thread-2] Loaded converter: CONVERTER_molecules +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:48,800 [pN:main.1,p:76310,tN:Thread-2] Loaded converter: CONVERTER_molecules +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:48,800 [pN:main.1,p:76310,tN:Thread-2] Loaded converter: CONVERTER_molecules +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:48,800 [pN:main.1,p:76310,tN:Thread-2] Loaded converter: CONVERTER_mol2_to_mol +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:48,802 [pN:main.1,p:76310,tN:Thread-2] Loaded converter: CONVERTER_molecules +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:48,802 [pN:main.1,p:76310,tN:Thread-2] Loaded converter: CONVERTER_cml_to_smiles +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:48,802 [pN:main.1,p:76310,tN:Thread-2] Loaded converter: CONVERTER_molecules +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:48,802 [pN:main.1,p:76310,tN:Thread-2] Loaded converter: CONVERTER_molecules +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:48,803 [pN:main.1,p:76310,tN:Thread-2] Loaded converter: CONVERTER_molecules +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:48,803 [pN:main.1,p:76310,tN:Thread-2] Loaded converter: CONVERTER_Pdb_to_Gro_0 +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:48,803 [pN:main.1,p:76310,tN:Thread-2] Loaded converter: CONVERTER_mdconvert +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:48,803 [pN:main.1,p:76310,tN:Thread-2] Loaded converter: CONVERTER_mdconvert +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:48,803 [pN:main.1,p:76310,tN:Thread-2] Loaded converter: CONVERTER_mdconvert +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:48,803 [pN:main.1,p:76310,tN:Thread-2] Loaded converter: CONVERTER_mdconvert +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:48,804 [pN:main.1,p:76310,tN:Thread-2] Loaded converter: CONVERTER_mdconvert +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:48,804 [pN:main.1,p:76310,tN:Thread-2] Loaded converter: CONVERTER_mdconvert +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:48,804 [pN:main.1,p:76310,tN:Thread-2] Loaded converter: CONVERTER_Gro_to_Pdb_0 +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:48,806 [pN:main.1,p:76310,tN:Thread-2] Loaded converter: CONVERTER_ref_to_seq_taxomony +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:48,806 [pN:main.1,p:76310,tN:Thread-2] Loaded converter: CONVERTER_neostorezip_to_neostore +galaxy.datatypes.registry DEBUG 2024-02-23 13:24:48,810 [pN:main.1,p:76310,tN:Thread-2] Loaded external metadata tool: __SET_METADATA__ +galaxy.tools.special_tools DEBUG 2024-02-23 13:24:48,812 [pN:main.1,p:76310,tN:Thread-2] Loaded history export tool: __EXPORT_HISTORY__ +galaxy.tools.special_tools DEBUG 2024-02-23 13:24:48,816 [pN:main.1,p:76310,tN:Thread-2] Loaded history export to uri tool: __EXPORT_HISTORY_TO_URI__ +galaxy.tools.special_tools DEBUG 2024-02-23 13:24:48,817 [pN:main.1,p:76310,tN:Thread-2] Loaded history import tool: __IMPORT_HISTORY__ +galaxy.tools.special_tools DEBUG 2024-02-23 13:24:48,820 [pN:main.1,p:76310,tN:Thread-2] Loaded data fetch tool: __DATA_FETCH__ +galaxy.queue_worker INFO 2024-02-23 13:24:48,820 [pN:main.1,p:76310,tN:Thread-2] Queuing async task rebuild_toolbox_search_index for main.1. +galaxy.queue_worker DEBUG 2024-02-23 13:24:48,835 [pN:main.1,p:76310,tN:Thread-2] Toolbox reload (188.007 ms) +galaxy.queue_worker INFO 2024-02-23 13:24:48,836 [pN:main.1,p:76310,tN:Thread-2] Queuing async task rebuild_toolbox_search_index for main.1. +galaxy.web_stack INFO 2024-02-23 13:24:48,844 [pN:main.1,p:76310,tN:Thread-2] Galaxy server instance 'main.1' is running +[92m +Serving on http://127.0.0.1:39427 +[0m +multipart.multipart DEBUG 2024-02-23 13:24:49,532 [pN:main.1,p:76310,tN:MainThread] Calling on_field_start with no data +multipart.multipart DEBUG 2024-02-23 13:24:49,532 [pN:main.1,p:76310,tN:MainThread] Calling on_field_name with data[0:4] +multipart.multipart DEBUG 2024-02-23 13:24:49,532 [pN:main.1,p:76310,tN:MainThread] Calling on_field_data with data[5:63] +multipart.multipart DEBUG 2024-02-23 13:24:49,532 [pN:main.1,p:76310,tN:MainThread] Calling on_field_end with no data +multipart.multipart DEBUG 2024-02-23 13:24:49,532 [pN:main.1,p:76310,tN:MainThread] Calling on_end with no data +galaxy.tools INFO 2024-02-23 13:24:49,706 [pN:main.1,p:76310,tN:WSGI_0] Validated and populated state for tool request (11.250 ms) +galaxy.tools.actions.upload DEBUG 2024-02-23 13:24:49,712 [pN:main.1,p:76310,tN:WSGI_0] Persisted uploads (0.123 ms) +galaxy.tools.actions.upload DEBUG 2024-02-23 13:24:49,791 [pN:main.1,p:76310,tN:WSGI_0] Checked uploads (78.653 ms) +galaxy.tools.actions.upload DEBUG 2024-02-23 13:24:49,794 [pN:main.1,p:76310,tN:WSGI_0] Created upload job (3.491 ms) +galaxy.tools.execute DEBUG 2024-02-23 13:24:49,795 [pN:main.1,p:76310,tN:WSGI_0] Tool upload1 created job None (83.248 ms) +galaxy.web_stack.handlers INFO 2024-02-23 13:24:49,831 [pN:main.1,p:76310,tN:WSGI_0] (Job[id=1,tool_id=upload1]) Handler '_default_' assigned using 'HANDLER_ASSIGNMENT_METHODS.DB_SKIP_LOCKED' assignment method +galaxy.tools.execute DEBUG 2024-02-23 13:24:49,844 [pN:main.1,p:76310,tN:WSGI_0] Created 1 job(s) for tool upload1 request (137.341 ms) +galaxy.queue_worker INFO 2024-02-23 13:24:49,860 [pN:main.1,p:76310,tN:Thread-1] Instance 'main.1' received 'rebuild_toolbox_search_index' task, executing now. +galaxy.tools.search DEBUG 2024-02-23 13:24:49,860 [pN:main.1,p:76310,tN:Thread-1] Starting to build toolbox index of panel default. +galaxy.tools.search DEBUG 2024-02-23 13:24:49,888 [pN:main.1,p:76310,tN:Thread-1] Toolbox index of panel default finished (27.744 ms) +galaxy.tools.search DEBUG 2024-02-23 13:24:49,888 [pN:main.1,p:76310,tN:Thread-1] Starting to build toolbox index of panel ontology:edam_operations. +galaxy.tools.search DEBUG 2024-02-23 13:24:49,906 [pN:main.1,p:76310,tN:Thread-1] Toolbox index of panel ontology:edam_operations finished (17.556 ms) +galaxy.tools.search DEBUG 2024-02-23 13:24:49,906 [pN:main.1,p:76310,tN:Thread-1] Starting to build toolbox index of panel ontology:edam_topics. +galaxy.tools.search DEBUG 2024-02-23 13:24:49,911 [pN:main.1,p:76310,tN:Thread-1] Toolbox index of panel ontology:edam_topics finished (4.644 ms) +galaxy.queue_worker INFO 2024-02-23 13:24:49,933 [pN:main.1,p:76310,tN:Thread-1] Instance 'main.1' received 'rebuild_toolbox_search_index' task, executing now. +galaxy.tools.search DEBUG 2024-02-23 13:24:49,933 [pN:main.1,p:76310,tN:Thread-1] Starting to build toolbox index of panel default. +galaxy.tools.search DEBUG 2024-02-23 13:24:49,983 [pN:main.1,p:76310,tN:Thread-1] Toolbox index of panel default finished (48.967 ms) +galaxy.tools.search DEBUG 2024-02-23 13:24:49,983 [pN:main.1,p:76310,tN:Thread-1] Starting to build toolbox index of panel ontology:edam_operations. +galaxy.tools.search DEBUG 2024-02-23 13:24:49,988 [pN:main.1,p:76310,tN:Thread-1] Toolbox index of panel ontology:edam_operations finished (5.496 ms) +galaxy.tools.search DEBUG 2024-02-23 13:24:49,989 [pN:main.1,p:76310,tN:Thread-1] Starting to build toolbox index of panel ontology:edam_topics. +galaxy.tools.search DEBUG 2024-02-23 13:24:49,993 [pN:main.1,p:76310,tN:Thread-1] Toolbox index of panel ontology:edam_topics finished (4.199 ms) +galaxy.jobs.mapper DEBUG 2024-02-23 13:24:50,870 [pN:main.1,p:76310,tN:JobHandlerQueue.monitor_thread] (1) Mapped job to destination id: docker_local +galaxy.jobs.handler DEBUG 2024-02-23 13:24:50,885 [pN:main.1,p:76310,tN:JobHandlerQueue.monitor_thread] (1) Dispatching to local runner +galaxy.jobs DEBUG 2024-02-23 13:24:50,899 [pN:main.1,p:76310,tN:JobHandlerQueue.monitor_thread] (1) Persisting job destination (destination id: docker_local) +galaxy.jobs DEBUG 2024-02-23 13:24:50,910 [pN:main.1,p:76310,tN:JobHandlerQueue.monitor_thread] (1) Working directory for job is: /tmp/tmpu7x63f_i/job_working_directory/000/1 +galaxy.jobs.runners DEBUG 2024-02-23 13:24:50,917 [pN:main.1,p:76310,tN:JobHandlerQueue.monitor_thread] Job [1] queued (30.885 ms) +galaxy.jobs.handler INFO 2024-02-23 13:24:50,928 [pN:main.1,p:76310,tN:JobHandlerQueue.monitor_thread] (1) Job dispatched +galaxy.jobs DEBUG 2024-02-23 13:24:51,023 [pN:main.1,p:76310,tN:LocalRunner.work_thread-0] Job wrapper for Job [1] prepared (87.577 ms) +galaxy.tool_util.deps.containers INFO 2024-02-23 13:24:51,024 [pN:main.1,p:76310,tN:LocalRunner.work_thread-0] Checking with container resolver [ExplicitContainerResolver[]] found description [None] +galaxy.tool_util.deps.containers INFO 2024-02-23 13:24:51,024 [pN:main.1,p:76310,tN:LocalRunner.work_thread-0] Checking with container resolver [CachedMulledDockerContainerResolver[namespace=biocontainers]] found description [None] +galaxy.tool_util.deps.containers INFO 2024-02-23 13:24:51,024 [pN:main.1,p:76310,tN:LocalRunner.work_thread-0] Checking with container resolver [CachedMulledDockerContainerResolver[namespace=local]] found description [None] +galaxy.tool_util.deps.containers INFO 2024-02-23 13:24:51,024 [pN:main.1,p:76310,tN:LocalRunner.work_thread-0] Checking with container resolver [MulledDockerContainerResolver[namespace=biocontainers]] found description [None] +galaxy.tool_util.deps.containers INFO 2024-02-23 13:24:51,024 [pN:main.1,p:76310,tN:LocalRunner.work_thread-0] Checking with container resolver [BuildDockerContainerResolver[namespace=local]] found description [None] +galaxy.jobs.command_factory INFO 2024-02-23 13:24:51,052 [pN:main.1,p:76310,tN:LocalRunner.work_thread-0] Built script [/tmp/tmpu7x63f_i/job_working_directory/000/1/tool_script.sh] for tool command [python '/scratch/rico/galaxy/tools/data_source/upload.py' '/scratch/rico/galaxy' '/tmp/tmpu7x63f_i/job_working_directory/000/1/registry.xml' '/tmp/tmpu7x63f_i/job_working_directory/000/1/upload_params.json' '1:/tmp/tmpu7x63f_i/job_working_directory/000/1/outputs/dataset_eec98b5f-f9be-4dc5-96b4-503ed9063d81_files:/tmp/tmpu7x63f_i/job_working_directory/000/1/outputs/dataset_eec98b5f-f9be-4dc5-96b4-503ed9063d81.dat'] +galaxy.jobs.runners DEBUG 2024-02-23 13:24:51,107 [pN:main.1,p:76310,tN:LocalRunner.work_thread-0] (1) command is: mkdir -p working outputs configs +if [ -d _working ]; then + rm -rf working/ outputs/ configs/; cp -R _working working; cp -R _outputs outputs; cp -R _configs configs +else + cp -R working _working; cp -R outputs _outputs; cp -R configs _configs +fi +cd working; /bin/bash /tmp/tmpu7x63f_i/job_working_directory/000/1/tool_script.sh > '../outputs/tool_stdout' 2> '../outputs/tool_stderr'; return_code=$?; echo $return_code > /tmp/tmpu7x63f_i/job_working_directory/000/1/galaxy_1.ec; cd '/tmp/tmpu7x63f_i/job_working_directory/000/1'; +[ "$GALAXY_VIRTUAL_ENV" = "None" ] && GALAXY_VIRTUAL_ENV="$_GALAXY_VIRTUAL_ENV"; _galaxy_setup_environment True; python metadata/set.py; sh -c "exit $return_code" +galaxy.jobs.runners.local DEBUG 2024-02-23 13:24:51,129 [pN:main.1,p:76310,tN:LocalRunner.work_thread-0] (1) executing job script: /tmp/tmpu7x63f_i/job_working_directory/000/1/galaxy_1.sh +galaxy.jobs.runners.util.process_groups DEBUG 2024-02-23 13:24:56,804 [pN:main.1,p:76310,tN:LocalRunner.work_thread-0] check_pg(): No process found in process group 76332 +galaxy.jobs.runners.local DEBUG 2024-02-23 13:24:56,805 [pN:main.1,p:76310,tN:LocalRunner.work_thread-0] execution finished: /tmp/tmpu7x63f_i/job_working_directory/000/1/galaxy_1.sh +galaxy.jobs DEBUG 2024-02-23 13:24:56,843 [pN:main.1,p:76310,tN:LocalRunner.work_thread-0] finish(): Moved /tmp/tmpu7x63f_i/job_working_directory/000/1/outputs/dataset_eec98b5f-f9be-4dc5-96b4-503ed9063d81.dat to /tmp/tmpu7x63f_i/files/e/e/c/dataset_eec98b5f-f9be-4dc5-96b4-503ed9063d81.dat +galaxy.model.metadata DEBUG 2024-02-23 13:24:56,857 [pN:main.1,p:76310,tN:LocalRunner.work_thread-0] loading metadata from file for: HistoryDatasetAssociation 1 +galaxy.jobs DEBUG 2024-02-23 13:24:56,909 [pN:main.1,p:76310,tN:LocalRunner.work_thread-0] job_wrapper.finish for job 1 executed (79.553 ms) +galaxy.tools INFO 2024-02-23 13:24:57,214 [pN:main.1,p:76310,tN:WSGI_2] Validated and populated state for tool request (12.825 ms) +galaxy.tools.actions INFO 2024-02-23 13:24:57,221 [pN:main.1,p:76310,tN:WSGI_2] Handled output named adaptor_report for tool ncbi_fcs_adaptor (3.467 ms) +galaxy.tools.actions INFO 2024-02-23 13:24:57,223 [pN:main.1,p:76310,tN:WSGI_2] Handled output named clean_fasta for tool ncbi_fcs_adaptor (2.550 ms) +galaxy.tools.actions INFO 2024-02-23 13:24:57,240 [pN:main.1,p:76310,tN:WSGI_2] Added output datasets to history (16.898 ms) +galaxy.tools.actions INFO 2024-02-23 13:24:57,242 [pN:main.1,p:76310,tN:WSGI_2] Setup for job Job[unflushed,tool_id=ncbi_fcs_adaptor] complete, ready to be enqueued (1.769 ms) +galaxy.tools.execute DEBUG 2024-02-23 13:24:57,242 [pN:main.1,p:76310,tN:WSGI_2] Tool ncbi_fcs_adaptor created job None (26.970 ms) +galaxy.web_stack.handlers INFO 2024-02-23 13:24:57,270 [pN:main.1,p:76310,tN:WSGI_2] (Job[id=2,tool_id=ncbi_fcs_adaptor]) Handler '_default_' assigned using 'HANDLER_ASSIGNMENT_METHODS.DB_SKIP_LOCKED' assignment method +galaxy.tools.execute DEBUG 2024-02-23 13:24:57,279 [pN:main.1,p:76310,tN:WSGI_2] Created 1 job(s) for tool ncbi_fcs_adaptor request (64.987 ms) +galaxy.jobs.mapper DEBUG 2024-02-23 13:24:58,083 [pN:main.1,p:76310,tN:JobHandlerQueue.monitor_thread] (2) Mapped job to destination id: docker_local +galaxy.jobs.handler DEBUG 2024-02-23 13:24:58,085 [pN:main.1,p:76310,tN:JobHandlerQueue.monitor_thread] (2) Dispatching to local runner +galaxy.jobs DEBUG 2024-02-23 13:24:58,091 [pN:main.1,p:76310,tN:JobHandlerQueue.monitor_thread] (2) Persisting job destination (destination id: docker_local) +galaxy.jobs DEBUG 2024-02-23 13:24:58,096 [pN:main.1,p:76310,tN:JobHandlerQueue.monitor_thread] (2) Working directory for job is: /tmp/tmpu7x63f_i/job_working_directory/000/2 +galaxy.jobs.runners DEBUG 2024-02-23 13:24:58,104 [pN:main.1,p:76310,tN:JobHandlerQueue.monitor_thread] Job [2] queued (17.918 ms) +galaxy.jobs.handler INFO 2024-02-23 13:24:58,113 [pN:main.1,p:76310,tN:JobHandlerQueue.monitor_thread] (2) Job dispatched +galaxy.security.object_wrapper WARNING 2024-02-23 13:24:58,154 [pN:main.1,p:76310,tN:LocalRunner.work_thread-1] Unable to create dynamic subclass SafeStringWrapper__galaxy.model.none_like.None__NoneType__NotImplementedType__Number__SafeStringWrapper__ToolParameterValueWrapper__bool__bytearray__ellipsis for <class 'galaxy.model.none_like.NoneDataset'>, None: type() doesn't support MRO entry resolution; use types.new_class() +galaxy.jobs DEBUG 2024-02-23 13:24:58,171 [pN:main.1,p:76310,tN:LocalRunner.work_thread-1] Job wrapper for Job [2] prepared (48.293 ms) +galaxy.tool_util.deps.containers INFO 2024-02-23 13:24:58,171 [pN:main.1,p:76310,tN:LocalRunner.work_thread-1] Checking with container resolver [ExplicitContainerResolver[]] found description [ContainerDescription[identifier=ncbi/fcs-adaptor:0.5.0,type=docker]] +galaxy.jobs.command_factory INFO 2024-02-23 13:24:58,228 [pN:main.1,p:76310,tN:LocalRunner.work_thread-1] Built script [/tmp/tmpu7x63f_i/job_working_directory/000/2/tool_script.sh] for tool command [/app/fcs/bin/av_screen_x -o "$(pwd)" '--prok' '/tmp/tmpu7x63f_i/files/e/e/c/dataset_eec98b5f-f9be-4dc5-96b4-503ed9063d81.dat'] +galaxy.jobs.runners DEBUG 2024-02-23 13:24:58,271 [pN:main.1,p:76310,tN:LocalRunner.work_thread-1] (2) command is: mkdir -p working outputs configs +if [ -d _working ]; then + rm -rf working/ outputs/ configs/; cp -R _working working; cp -R _outputs outputs; cp -R _configs configs +else + cp -R working _working; cp -R outputs _outputs; cp -R configs _configs +fi +cd working; +_on_exit() { + docker kill f71ddf064bc8471290726ff32293b0f0 &> /dev/null +} +trap _on_exit EXIT +docker inspect ncbi/fcs-adaptor:0.5.0 > /dev/null 2>&1 +[ $? -ne 0 ] && docker pull ncbi/fcs-adaptor:0.5.0 > /dev/null 2>&1 + +docker run -e "GALAXY_SLOTS=$GALAXY_SLOTS" -e "GALAXY_MEMORY_MB=$GALAXY_MEMORY_MB" -e "GALAXY_MEMORY_MB_PER_SLOT=$GALAXY_MEMORY_MB_PER_SLOT" -e "HOME=$HOME" -e "_GALAXY_JOB_HOME_DIR=$_GALAXY_JOB_HOME_DIR" -e "_GALAXY_JOB_TMP_DIR=$_GALAXY_JOB_TMP_DIR" -e "TMPDIR=$TMPDIR" -e "TMP=$TMP" -e "TEMP=$TEMP" --name f71ddf064bc8471290726ff32293b0f0 -v "$_GALAXY_JOB_TMP_DIR:$_GALAXY_JOB_TMP_DIR:rw" -v "$TMPDIR:$TMPDIR:rw" -v "$TMP:$TMP:rw" -v "$TEMP:$TEMP:rw" -v /scratch/rico/galaxy:/scratch/rico/galaxy:ro -v /scratch/rico/galaxytools/tools/ncbi_fcs_adaptor:/scratch/rico/galaxytools/tools/ncbi_fcs_adaptor:ro -v /tmp/tmpu7x63f_i/job_working_directory/000/2:/tmp/tmpu7x63f_i/job_working_directory/000/2:ro -v /tmp/tmpu7x63f_i/job_working_directory/000/2/outputs:/tmp/tmpu7x63f_i/job_working_directory/000/2/outputs:rw -v "$_GALAXY_JOB_HOME_DIR:$_GALAXY_JOB_HOME_DIR:rw" -v /tmp/tmpu7x63f_i/job_working_directory/000/2/working:/tmp/tmpu7x63f_i/job_working_directory/000/2/working:rw -v /tmp/tmpu7x63f_i/files:/tmp/tmpu7x63f_i/files:ro -v /scratch/rico/galaxy/tool-data:/scratch/rico/galaxy/tool-data:ro --cpus ${GALAXY_SLOTS:-1} -w /tmp/tmpu7x63f_i/job_working_directory/000/2/working --rm --user 1028:1028 ncbi/fcs-adaptor:0.5.0 /bin/sh /tmp/tmpu7x63f_i/job_working_directory/000/2/tool_script.sh > '../outputs/tool_stdout' 2> '../outputs/tool_stderr'; return_code=$?; echo $return_code > /tmp/tmpu7x63f_i/job_working_directory/000/2/galaxy_2.ec; +if [ -f "/tmp/tmpu7x63f_i/job_working_directory/000/2/working/fcs_adaptor_report.txt" ] ; then cp "/tmp/tmpu7x63f_i/job_working_directory/000/2/working/fcs_adaptor_report.txt" "/tmp/tmpu7x63f_i/job_working_directory/000/2/outputs/dataset_1a2ea823-d7e6-495f-a31e-e8d6621f705c.dat" ; fi; +if [ -f "/tmp/tmpu7x63f_i/job_working_directory/000/2/working/cleaned_sequences/"*".dat" ] ; then cp "/tmp/tmpu7x63f_i/job_working_directory/000/2/working/cleaned_sequences/"*".dat" "/tmp/tmpu7x63f_i/job_working_directory/000/2/outputs/dataset_4e39d590-f2e3-4821-87bc-68df5a7106cb.dat" ; fi; cd '/tmp/tmpu7x63f_i/job_working_directory/000/2'; +[ "$GALAXY_VIRTUAL_ENV" = "None" ] && GALAXY_VIRTUAL_ENV="$_GALAXY_VIRTUAL_ENV"; _galaxy_setup_environment True; python metadata/set.py; sh -c "exit $return_code" +galaxy.jobs.runners.local DEBUG 2024-02-23 13:24:58,294 [pN:main.1,p:76310,tN:LocalRunner.work_thread-1] (2) executing job script: /tmp/tmpu7x63f_i/job_working_directory/000/2/galaxy_2.sh +galaxy.jobs.runners.util.process_groups DEBUG 2024-02-23 13:25:49,969 [pN:main.1,p:76310,tN:LocalRunner.work_thread-1] check_pg(): No process found in process group 76490 +galaxy.jobs.runners.local DEBUG 2024-02-23 13:25:49,970 [pN:main.1,p:76310,tN:LocalRunner.work_thread-1] execution finished: /tmp/tmpu7x63f_i/job_working_directory/000/2/galaxy_2.sh +galaxy.jobs DEBUG 2024-02-23 13:25:49,995 [pN:main.1,p:76310,tN:LocalRunner.work_thread-1] finish(): Moved /tmp/tmpu7x63f_i/job_working_directory/000/2/outputs/dataset_1a2ea823-d7e6-495f-a31e-e8d6621f705c.dat to /tmp/tmpu7x63f_i/files/1/a/2/dataset_1a2ea823-d7e6-495f-a31e-e8d6621f705c.dat +galaxy.jobs DEBUG 2024-02-23 13:25:49,995 [pN:main.1,p:76310,tN:LocalRunner.work_thread-1] finish(): Moved /tmp/tmpu7x63f_i/job_working_directory/000/2/outputs/dataset_4e39d590-f2e3-4821-87bc-68df5a7106cb.dat to /tmp/tmpu7x63f_i/files/4/e/3/dataset_4e39d590-f2e3-4821-87bc-68df5a7106cb.dat +galaxy.model.metadata DEBUG 2024-02-23 13:25:50,004 [pN:main.1,p:76310,tN:LocalRunner.work_thread-1] loading metadata from file for: HistoryDatasetAssociation 2 +galaxy.model.metadata DEBUG 2024-02-23 13:25:50,011 [pN:main.1,p:76310,tN:LocalRunner.work_thread-1] loading metadata from file for: HistoryDatasetAssociation 3 +galaxy.jobs DEBUG 2024-02-23 13:25:50,081 [pN:main.1,p:76310,tN:LocalRunner.work_thread-1] job_wrapper.finish for job 2 executed (91.685 ms) +multipart.multipart DEBUG 2024-02-23 13:25:50,805 [pN:main.1,p:76310,tN:MainThread] Calling on_field_start with no data +multipart.multipart DEBUG 2024-02-23 13:25:50,805 [pN:main.1,p:76310,tN:MainThread] Calling on_field_name with data[0:4] +multipart.multipart DEBUG 2024-02-23 13:25:50,805 [pN:main.1,p:76310,tN:MainThread] Calling on_field_data with data[5:63] +multipart.multipart DEBUG 2024-02-23 13:25:50,805 [pN:main.1,p:76310,tN:MainThread] Calling on_field_end with no data +multipart.multipart DEBUG 2024-02-23 13:25:50,805 [pN:main.1,p:76310,tN:MainThread] Calling on_end with no data +galaxy.tools INFO 2024-02-23 13:25:50,949 [pN:main.1,p:76310,tN:WSGI_8] Validated and populated state for tool request (7.807 ms) +galaxy.tools.actions.upload DEBUG 2024-02-23 13:25:50,953 [pN:main.1,p:76310,tN:WSGI_8] Persisted uploads (0.127 ms) +galaxy.tools.actions.upload DEBUG 2024-02-23 13:25:50,994 [pN:main.1,p:76310,tN:WSGI_8] Checked uploads (41.512 ms) +galaxy.tools.actions.upload DEBUG 2024-02-23 13:25:50,996 [pN:main.1,p:76310,tN:WSGI_8] Created upload job (2.119 ms) +galaxy.tools.execute DEBUG 2024-02-23 13:25:50,997 [pN:main.1,p:76310,tN:WSGI_8] Tool upload1 created job None (44.285 ms) +galaxy.web_stack.handlers INFO 2024-02-23 13:25:51,010 [pN:main.1,p:76310,tN:WSGI_8] (Job[id=3,tool_id=upload1]) Handler '_default_' assigned using 'HANDLER_ASSIGNMENT_METHODS.DB_SKIP_LOCKED' assignment method +galaxy.tools.execute DEBUG 2024-02-23 13:25:51,014 [pN:main.1,p:76310,tN:WSGI_8] Created 1 job(s) for tool upload1 request (64.682 ms) +galaxy.jobs.mapper DEBUG 2024-02-23 13:25:51,360 [pN:main.1,p:76310,tN:JobHandlerQueue.monitor_thread] (3) Mapped job to destination id: docker_local +galaxy.jobs.handler DEBUG 2024-02-23 13:25:51,366 [pN:main.1,p:76310,tN:JobHandlerQueue.monitor_thread] (3) Dispatching to local runner +galaxy.jobs DEBUG 2024-02-23 13:25:51,383 [pN:main.1,p:76310,tN:JobHandlerQueue.monitor_thread] (3) Persisting job destination (destination id: docker_local) +galaxy.jobs DEBUG 2024-02-23 13:25:51,393 [pN:main.1,p:76310,tN:JobHandlerQueue.monitor_thread] (3) Working directory for job is: /tmp/tmpu7x63f_i/job_working_directory/000/3 +galaxy.jobs.runners DEBUG 2024-02-23 13:25:51,399 [pN:main.1,p:76310,tN:JobHandlerQueue.monitor_thread] Job [3] queued (32.821 ms) +galaxy.jobs.handler INFO 2024-02-23 13:25:51,420 [pN:main.1,p:76310,tN:JobHandlerQueue.monitor_thread] (3) Job dispatched +galaxy.jobs DEBUG 2024-02-23 13:25:51,459 [pN:main.1,p:76310,tN:LocalRunner.work_thread-3] Job wrapper for Job [3] prepared (38.864 ms) +galaxy.tool_util.deps.containers INFO 2024-02-23 13:25:51,460 [pN:main.1,p:76310,tN:LocalRunner.work_thread-3] Checking with container resolver [ExplicitContainerResolver[]] found description [None] +galaxy.tool_util.deps.containers INFO 2024-02-23 13:25:51,460 [pN:main.1,p:76310,tN:LocalRunner.work_thread-3] Checking with container resolver [CachedMulledDockerContainerResolver[namespace=biocontainers]] found description [None] +galaxy.tool_util.deps.containers INFO 2024-02-23 13:25:51,460 [pN:main.1,p:76310,tN:LocalRunner.work_thread-3] Checking with container resolver [CachedMulledDockerContainerResolver[namespace=local]] found description [None] +galaxy.tool_util.deps.containers INFO 2024-02-23 13:25:51,460 [pN:main.1,p:76310,tN:LocalRunner.work_thread-3] Checking with container resolver [MulledDockerContainerResolver[namespace=biocontainers]] found description [None] +galaxy.tool_util.deps.containers INFO 2024-02-23 13:25:51,460 [pN:main.1,p:76310,tN:LocalRunner.work_thread-3] Checking with container resolver [BuildDockerContainerResolver[namespace=local]] found description [None] +galaxy.jobs.command_factory INFO 2024-02-23 13:25:51,486 [pN:main.1,p:76310,tN:LocalRunner.work_thread-3] Built script [/tmp/tmpu7x63f_i/job_working_directory/000/3/tool_script.sh] for tool command [python '/scratch/rico/galaxy/tools/data_source/upload.py' '/scratch/rico/galaxy' '/tmp/tmpu7x63f_i/job_working_directory/000/3/registry.xml' '/tmp/tmpu7x63f_i/job_working_directory/000/3/upload_params.json' '4:/tmp/tmpu7x63f_i/job_working_directory/000/3/outputs/dataset_96bb2ac5-08a0-48d7-9de5-79affb15526d_files:/tmp/tmpu7x63f_i/job_working_directory/000/3/outputs/dataset_96bb2ac5-08a0-48d7-9de5-79affb15526d.dat'] +galaxy.jobs.runners DEBUG 2024-02-23 13:25:51,512 [pN:main.1,p:76310,tN:LocalRunner.work_thread-3] (3) command is: mkdir -p working outputs configs +if [ -d _working ]; then + rm -rf working/ outputs/ configs/; cp -R _working working; cp -R _outputs outputs; cp -R _configs configs +else + cp -R working _working; cp -R outputs _outputs; cp -R configs _configs +fi +cd working; /bin/bash /tmp/tmpu7x63f_i/job_working_directory/000/3/tool_script.sh > '../outputs/tool_stdout' 2> '../outputs/tool_stderr'; return_code=$?; echo $return_code > /tmp/tmpu7x63f_i/job_working_directory/000/3/galaxy_3.ec; cd '/tmp/tmpu7x63f_i/job_working_directory/000/3'; +[ "$GALAXY_VIRTUAL_ENV" = "None" ] && GALAXY_VIRTUAL_ENV="$_GALAXY_VIRTUAL_ENV"; _galaxy_setup_environment True; python metadata/set.py; sh -c "exit $return_code" +galaxy.jobs.runners.local DEBUG 2024-02-23 13:25:51,533 [pN:main.1,p:76310,tN:LocalRunner.work_thread-3] (3) executing job script: /tmp/tmpu7x63f_i/job_working_directory/000/3/galaxy_3.sh +galaxy.jobs.runners.util.process_groups DEBUG 2024-02-23 13:25:57,636 [pN:main.1,p:76310,tN:LocalRunner.work_thread-3] check_pg(): No process found in process group 76848 +galaxy.jobs.runners.local DEBUG 2024-02-23 13:25:57,638 [pN:main.1,p:76310,tN:LocalRunner.work_thread-3] execution finished: /tmp/tmpu7x63f_i/job_working_directory/000/3/galaxy_3.sh +galaxy.jobs DEBUG 2024-02-23 13:25:57,660 [pN:main.1,p:76310,tN:LocalRunner.work_thread-3] finish(): Moved /tmp/tmpu7x63f_i/job_working_directory/000/3/outputs/dataset_96bb2ac5-08a0-48d7-9de5-79affb15526d.dat to /tmp/tmpu7x63f_i/files/9/6/b/dataset_96bb2ac5-08a0-48d7-9de5-79affb15526d.dat +galaxy.model.metadata DEBUG 2024-02-23 13:25:57,668 [pN:main.1,p:76310,tN:LocalRunner.work_thread-3] loading metadata from file for: HistoryDatasetAssociation 4 +galaxy.jobs DEBUG 2024-02-23 13:25:57,695 [pN:main.1,p:76310,tN:LocalRunner.work_thread-3] job_wrapper.finish for job 3 executed (41.217 ms) +galaxy.tools INFO 2024-02-23 13:25:57,927 [pN:main.1,p:76310,tN:WSGI_5] Validated and populated state for tool request (4.567 ms) +galaxy.tools.actions INFO 2024-02-23 13:25:57,932 [pN:main.1,p:76310,tN:WSGI_5] Handled output named adaptor_report for tool ncbi_fcs_adaptor (1.226 ms) +galaxy.tools.actions INFO 2024-02-23 13:25:57,933 [pN:main.1,p:76310,tN:WSGI_5] Handled output named clean_fasta for tool ncbi_fcs_adaptor (0.730 ms) +galaxy.tools.actions DEBUG 2024-02-23 13:25:57,933 [pN:main.1,p:76310,tN:WSGI_5] Tool ncbi_fcs_adaptor output adaptor_log: dataset output filter (advanced['optional_log'] is not None and 'adaptor_log' in advanced['optional_log'].split(',')) failed: 'list' object has no attribute 'split' +galaxy.tools.actions INFO 2024-02-23 13:25:57,936 [pN:main.1,p:76310,tN:WSGI_5] Handled output named adaptor_log for tool ncbi_fcs_adaptor (3.053 ms) +galaxy.tools.actions DEBUG 2024-02-23 13:25:57,936 [pN:main.1,p:76310,tN:WSGI_5] Tool ncbi_fcs_adaptor output validate_fasta_log: dataset output filter (advanced['optional_log'] is not None and 'validate_fasta_log' in advanced['optional_log'].split(',')) failed: 'list' object has no attribute 'split' +galaxy.tools.actions INFO 2024-02-23 13:25:57,939 [pN:main.1,p:76310,tN:WSGI_5] Handled output named validate_fasta_log for tool ncbi_fcs_adaptor (2.494 ms) +galaxy.tools.actions INFO 2024-02-23 13:25:57,947 [pN:main.1,p:76310,tN:WSGI_5] Added output datasets to history (7.846 ms) +galaxy.tools.actions INFO 2024-02-23 13:25:57,950 [pN:main.1,p:76310,tN:WSGI_5] Setup for job Job[unflushed,tool_id=ncbi_fcs_adaptor] complete, ready to be enqueued (2.292 ms) +galaxy.tools.execute DEBUG 2024-02-23 13:25:57,950 [pN:main.1,p:76310,tN:WSGI_5] Tool ncbi_fcs_adaptor created job None (20.728 ms) +galaxy.web_stack.handlers INFO 2024-02-23 13:25:57,971 [pN:main.1,p:76310,tN:WSGI_5] (Job[id=4,tool_id=ncbi_fcs_adaptor]) Handler '_default_' assigned using 'HANDLER_ASSIGNMENT_METHODS.DB_SKIP_LOCKED' assignment method +galaxy.tools.execute DEBUG 2024-02-23 13:25:57,975 [pN:main.1,p:76310,tN:WSGI_5] Created 1 job(s) for tool ncbi_fcs_adaptor request (47.336 ms) +galaxy.jobs.mapper DEBUG 2024-02-23 13:25:58,624 [pN:main.1,p:76310,tN:JobHandlerQueue.monitor_thread] (4) Mapped job to destination id: docker_local +galaxy.jobs.handler DEBUG 2024-02-23 13:25:58,630 [pN:main.1,p:76310,tN:JobHandlerQueue.monitor_thread] (4) Dispatching to local runner +galaxy.jobs DEBUG 2024-02-23 13:25:58,647 [pN:main.1,p:76310,tN:JobHandlerQueue.monitor_thread] (4) Persisting job destination (destination id: docker_local) +galaxy.jobs DEBUG 2024-02-23 13:25:58,659 [pN:main.1,p:76310,tN:JobHandlerQueue.monitor_thread] (4) Working directory for job is: /tmp/tmpu7x63f_i/job_working_directory/000/4 +galaxy.jobs.runners DEBUG 2024-02-23 13:25:58,666 [pN:main.1,p:76310,tN:JobHandlerQueue.monitor_thread] Job [4] queued (36.198 ms) +galaxy.jobs.handler INFO 2024-02-23 13:25:58,679 [pN:main.1,p:76310,tN:JobHandlerQueue.monitor_thread] (4) Job dispatched +galaxy.jobs DEBUG 2024-02-23 13:25:58,748 [pN:main.1,p:76310,tN:LocalRunner.work_thread-3] Job wrapper for Job [4] prepared (53.521 ms) +galaxy.tool_util.deps.containers INFO 2024-02-23 13:25:58,749 [pN:main.1,p:76310,tN:LocalRunner.work_thread-3] Checking with container resolver [ExplicitContainerResolver[]] found description [ContainerDescription[identifier=ncbi/fcs-adaptor:0.5.0,type=docker]] +galaxy.jobs.command_factory INFO 2024-02-23 13:25:58,784 [pN:main.1,p:76310,tN:LocalRunner.work_thread-3] Built script [/tmp/tmpu7x63f_i/job_working_directory/000/4/tool_script.sh] for tool command [/app/fcs/bin/av_screen_x -o "$(pwd)" '--prok' '/tmp/tmpu7x63f_i/files/9/6/b/dataset_96bb2ac5-08a0-48d7-9de5-79affb15526d.dat'] +galaxy.jobs.runners DEBUG 2024-02-23 13:25:58,828 [pN:main.1,p:76310,tN:LocalRunner.work_thread-3] (4) command is: mkdir -p working outputs configs +if [ -d _working ]; then + rm -rf working/ outputs/ configs/; cp -R _working working; cp -R _outputs outputs; cp -R _configs configs +else + cp -R working _working; cp -R outputs _outputs; cp -R configs _configs +fi +cd working; +_on_exit() { + docker kill 44f5466e5ac0453c8dfe234c278e5cf8 &> /dev/null +} +trap _on_exit EXIT +docker inspect ncbi/fcs-adaptor:0.5.0 > /dev/null 2>&1 +[ $? -ne 0 ] && docker pull ncbi/fcs-adaptor:0.5.0 > /dev/null 2>&1 + +docker run -e "GALAXY_SLOTS=$GALAXY_SLOTS" -e "GALAXY_MEMORY_MB=$GALAXY_MEMORY_MB" -e "GALAXY_MEMORY_MB_PER_SLOT=$GALAXY_MEMORY_MB_PER_SLOT" -e "HOME=$HOME" -e "_GALAXY_JOB_HOME_DIR=$_GALAXY_JOB_HOME_DIR" -e "_GALAXY_JOB_TMP_DIR=$_GALAXY_JOB_TMP_DIR" -e "TMPDIR=$TMPDIR" -e "TMP=$TMP" -e "TEMP=$TEMP" --name 44f5466e5ac0453c8dfe234c278e5cf8 -v "$_GALAXY_JOB_TMP_DIR:$_GALAXY_JOB_TMP_DIR:rw" -v "$TMPDIR:$TMPDIR:rw" -v "$TMP:$TMP:rw" -v "$TEMP:$TEMP:rw" -v /scratch/rico/galaxy:/scratch/rico/galaxy:ro -v /scratch/rico/galaxytools/tools/ncbi_fcs_adaptor:/scratch/rico/galaxytools/tools/ncbi_fcs_adaptor:ro -v /tmp/tmpu7x63f_i/job_working_directory/000/4:/tmp/tmpu7x63f_i/job_working_directory/000/4:ro -v /tmp/tmpu7x63f_i/job_working_directory/000/4/outputs:/tmp/tmpu7x63f_i/job_working_directory/000/4/outputs:rw -v "$_GALAXY_JOB_HOME_DIR:$_GALAXY_JOB_HOME_DIR:rw" -v /tmp/tmpu7x63f_i/job_working_directory/000/4/working:/tmp/tmpu7x63f_i/job_working_directory/000/4/working:rw -v /tmp/tmpu7x63f_i/files:/tmp/tmpu7x63f_i/files:ro -v /scratch/rico/galaxy/tool-data:/scratch/rico/galaxy/tool-data:ro --cpus ${GALAXY_SLOTS:-1} -w /tmp/tmpu7x63f_i/job_working_directory/000/4/working --rm --user 1028:1028 ncbi/fcs-adaptor:0.5.0 /bin/sh /tmp/tmpu7x63f_i/job_working_directory/000/4/tool_script.sh > '../outputs/tool_stdout' 2> '../outputs/tool_stderr'; return_code=$?; echo $return_code > /tmp/tmpu7x63f_i/job_working_directory/000/4/galaxy_4.ec; +if [ -f "/tmp/tmpu7x63f_i/job_working_directory/000/4/working/fcs_adaptor_report.txt" ] ; then cp "/tmp/tmpu7x63f_i/job_working_directory/000/4/working/fcs_adaptor_report.txt" "/tmp/tmpu7x63f_i/job_working_directory/000/4/outputs/dataset_5bd87a72-fbff-4e4a-a27a-aa9a07b645ae.dat" ; fi; +if [ -f "/tmp/tmpu7x63f_i/job_working_directory/000/4/working/cleaned_sequences/"*".dat" ] ; then cp "/tmp/tmpu7x63f_i/job_working_directory/000/4/working/cleaned_sequences/"*".dat" "/tmp/tmpu7x63f_i/job_working_directory/000/4/outputs/dataset_2556b660-7d40-4c96-ae9b-4e54b5c33132.dat" ; fi; +if [ -f "/tmp/tmpu7x63f_i/job_working_directory/000/4/working/fcs_adaptor.log" ] ; then cp "/tmp/tmpu7x63f_i/job_working_directory/000/4/working/fcs_adaptor.log" "/tmp/tmpu7x63f_i/job_working_directory/000/4/outputs/dataset_8294ec1f-feb6-4427-822b-0d653c89d82d.dat" ; fi; +if [ -f "/tmp/tmpu7x63f_i/job_working_directory/000/4/working/validate_fasta.txt" ] ; then cp "/tmp/tmpu7x63f_i/job_working_directory/000/4/working/validate_fasta.txt" "/tmp/tmpu7x63f_i/job_working_directory/000/4/outputs/dataset_664ec871-210e-4cf1-867e-c67d8419c064.dat" ; fi; cd '/tmp/tmpu7x63f_i/job_working_directory/000/4'; +[ "$GALAXY_VIRTUAL_ENV" = "None" ] && GALAXY_VIRTUAL_ENV="$_GALAXY_VIRTUAL_ENV"; _galaxy_setup_environment True; python metadata/set.py; sh -c "exit $return_code" +galaxy.jobs.runners.local DEBUG 2024-02-23 13:25:58,850 [pN:main.1,p:76310,tN:LocalRunner.work_thread-3] (4) executing job script: /tmp/tmpu7x63f_i/job_working_directory/000/4/galaxy_4.sh +galaxy.jobs.runners.util.process_groups DEBUG 2024-02-23 13:26:49,072 [pN:main.1,p:76310,tN:LocalRunner.work_thread-3] check_pg(): No process found in process group 77003 +galaxy.jobs.runners.local DEBUG 2024-02-23 13:26:49,073 [pN:main.1,p:76310,tN:LocalRunner.work_thread-3] execution finished: /tmp/tmpu7x63f_i/job_working_directory/000/4/galaxy_4.sh +galaxy.jobs DEBUG 2024-02-23 13:26:49,095 [pN:main.1,p:76310,tN:LocalRunner.work_thread-3] finish(): Moved /tmp/tmpu7x63f_i/job_working_directory/000/4/outputs/dataset_5bd87a72-fbff-4e4a-a27a-aa9a07b645ae.dat to /tmp/tmpu7x63f_i/files/5/b/d/dataset_5bd87a72-fbff-4e4a-a27a-aa9a07b645ae.dat +galaxy.jobs DEBUG 2024-02-23 13:26:49,096 [pN:main.1,p:76310,tN:LocalRunner.work_thread-3] finish(): Moved /tmp/tmpu7x63f_i/job_working_directory/000/4/outputs/dataset_2556b660-7d40-4c96-ae9b-4e54b5c33132.dat to /tmp/tmpu7x63f_i/files/2/5/5/dataset_2556b660-7d40-4c96-ae9b-4e54b5c33132.dat +galaxy.jobs DEBUG 2024-02-23 13:26:49,096 [pN:main.1,p:76310,tN:LocalRunner.work_thread-3] finish(): Moved /tmp/tmpu7x63f_i/job_working_directory/000/4/outputs/dataset_8294ec1f-feb6-4427-822b-0d653c89d82d.dat to /tmp/tmpu7x63f_i/files/8/2/9/dataset_8294ec1f-feb6-4427-822b-0d653c89d82d.dat +galaxy.jobs DEBUG 2024-02-23 13:26:49,096 [pN:main.1,p:76310,tN:LocalRunner.work_thread-3] finish(): Moved /tmp/tmpu7x63f_i/job_working_directory/000/4/outputs/dataset_664ec871-210e-4cf1-867e-c67d8419c064.dat to /tmp/tmpu7x63f_i/files/6/6/4/dataset_664ec871-210e-4cf1-867e-c67d8419c064.dat +galaxy.model.metadata DEBUG 2024-02-23 13:26:49,104 [pN:main.1,p:76310,tN:LocalRunner.work_thread-3] loading metadata from file for: HistoryDatasetAssociation 5 +galaxy.model.metadata DEBUG 2024-02-23 13:26:49,108 [pN:main.1,p:76310,tN:LocalRunner.work_thread-3] loading metadata from file for: HistoryDatasetAssociation 6 +galaxy.model.metadata DEBUG 2024-02-23 13:26:49,111 [pN:main.1,p:76310,tN:LocalRunner.work_thread-3] loading metadata from file for: HistoryDatasetAssociation 7 +galaxy.model.metadata DEBUG 2024-02-23 13:26:49,136 [pN:main.1,p:76310,tN:LocalRunner.work_thread-3] loading metadata from file for: HistoryDatasetAssociation 8 +galaxy.jobs DEBUG 2024-02-23 13:26:49,199 [pN:main.1,p:76310,tN:LocalRunner.work_thread-3] job_wrapper.finish for job 4 executed (108.579 ms) + +ps ax + PID TTY STAT TIME COMMAND + 1 ? Ss 0:12 /sbin/init + 2 ? S 0:02 [kthreadd] + 3 ? I< 0:00 [rcu_gp] + 4 ? I< 0:00 [rcu_par_gp] + 6 ? I< 0:00 [kworker/0:0H] + 8 ? I 2:16 [kworker/u224:0-ixgbe] + 9 ? I< 0:00 [mm_percpu_wq] + 10 ? S 0:05 [ksoftirqd/0] + 11 ? I 4:21 [rcu_sched] + 12 ? I 0:00 [rcu_bh] + 13 ? S 0:01 [migration/0] + 15 ? S 0:00 [cpuhp/0] + 16 ? S 0:00 [cpuhp/1] + 17 ? S 0:21 [migration/1] + 18 ? S 0:00 [ksoftirqd/1] + 20 ? I< 0:00 [kworker/1:0H-kblockd] + 21 ? S 0:00 [cpuhp/2] + 22 ? S 0:21 [migration/2] + 23 ? S 0:00 [ksoftirqd/2] + 25 ? I< 0:00 [kworker/2:0H-kblockd] + 26 ? S 0:00 [cpuhp/3] + 27 ? S 0:21 [migration/3] + 28 ? S 0:00 [ksoftirqd/3] + 30 ? I< 0:00 [kworker/3:0H-kblockd] + 31 ? S 0:00 [cpuhp/4] + 32 ? S 0:21 [migration/4] + 33 ? S 0:00 [ksoftirqd/4] + 35 ? I< 0:00 [kworker/4:0H-kblockd] + 36 ? S 0:00 [cpuhp/5] + 37 ? S 0:21 [migration/5] + 38 ? S 0:00 [ksoftirqd/5] + 40 ? I< 0:00 [kworker/5:0H-kblockd] + 41 ? S 0:00 [cpuhp/6] + 42 ? S 0:21 [migration/6] + 43 ? S 0:00 [ksoftirqd/6] + 45 ? I< 0:00 [kworker/6:0H-kblockd] + 46 ? S 0:00 [cpuhp/7] + 47 ? S 0:21 [migration/7] + 48 ? S 0:00 [ksoftirqd/7] + 50 ? I< 0:00 [kworker/7:0H] + 51 ? S 0:00 [cpuhp/8] + 52 ? S 0:21 [migration/8] + 53 ? S 0:00 [ksoftirqd/8] + 55 ? I< 0:00 [kworker/8:0H-kblockd] + 56 ? S 0:00 [cpuhp/9] + 57 ? S 0:21 [migration/9] + 58 ? S 0:00 [ksoftirqd/9] + 60 ? I< 0:00 [kworker/9:0H-kblockd] + 61 ? S 0:00 [cpuhp/10] + 62 ? S 0:21 [migration/10] + 63 ? S 0:03 [ksoftirqd/10] + 65 ? I< 0:00 [kworker/10:0H-kblockd] + 66 ? S 0:00 [cpuhp/11] + 67 ? S 0:21 [migration/11] + 68 ? S 0:00 [ksoftirqd/11] + 70 ? I< 0:00 [kworker/11:0H-kblockd] + 71 ? S 0:00 [cpuhp/12] + 72 ? S 0:21 [migration/12] + 73 ? S 0:00 [ksoftirqd/12] + 75 ? I< 0:00 [kworker/12:0H-kblockd] + 76 ? S 0:00 [cpuhp/13] + 77 ? S 0:21 [migration/13] + 78 ? S 0:00 [ksoftirqd/13] + 80 ? I< 0:00 [kworker/13:0H-kblockd] + 81 ? S 0:00 [cpuhp/14] + 82 ? S 0:21 [migration/14] + 83 ? S 0:00 [ksoftirqd/14] + 85 ? I< 0:00 [kworker/14:0H-kblockd] + 86 ? S 0:00 [cpuhp/15] + 87 ? S 0:21 [migration/15] + 88 ? S 0:00 [ksoftirqd/15] + 90 ? I< 0:00 [kworker/15:0H-kblockd] + 91 ? S 0:00 [cpuhp/16] + 92 ? S 0:21 [migration/16] + 93 ? S 0:00 [ksoftirqd/16] + 95 ? I< 0:00 [kworker/16:0H-kblockd] + 96 ? S 0:00 [cpuhp/17] + 97 ? S 0:21 [migration/17] + 98 ? S 0:00 [ksoftirqd/17] + 100 ? I< 0:00 [kworker/17:0H-kblockd] + 101 ? S 0:00 [cpuhp/18] + 102 ? S 0:21 [migration/18] + 103 ? S 0:00 [ksoftirqd/18] + 105 ? I< 0:00 [kworker/18:0H-kblockd] + 106 ? S 0:00 [cpuhp/19] + 107 ? S 0:21 [migration/19] + 108 ? S 0:00 [ksoftirqd/19] + 110 ? I< 0:00 [kworker/19:0H-kblockd] + 111 ? S 0:00 [cpuhp/20] + 112 ? S 0:21 [migration/20] + 113 ? S 0:00 [ksoftirqd/20] + 115 ? I< 0:00 [kworker/20:0H-kblockd] + 116 ? S 0:00 [cpuhp/21] + 117 ? S 0:21 [migration/21] + 118 ? S 0:00 [ksoftirqd/21] + 120 ? I< 0:00 [kworker/21:0H-kblockd] + 121 ? S 0:00 [cpuhp/22] + 122 ? S 0:21 [migration/22] + 123 ? S 0:00 [ksoftirqd/22] + 125 ? I< 0:00 [kworker/22:0H-kblockd] + 126 ? S 0:00 [cpuhp/23] + 127 ? S 0:21 [migration/23] + 128 ? S 0:00 [ksoftirqd/23] + 130 ? I< 0:00 [kworker/23:0H-kblockd] + 131 ? S 0:00 [cpuhp/24] + 132 ? S 0:21 [migration/24] + 133 ? S 0:00 [ksoftirqd/24] + 135 ? I< 0:00 [kworker/24:0H-kblockd] + 136 ? S 0:00 [cpuhp/25] + 137 ? S 0:21 [migration/25] + 138 ? S 0:00 [ksoftirqd/25] + 140 ? I< 0:00 [kworker/25:0H-kblockd] + 141 ? S 0:00 [cpuhp/26] + 142 ? S 0:21 [migration/26] + 143 ? S 0:00 [ksoftirqd/26] + 145 ? I< 0:00 [kworker/26:0H-kblockd] + 146 ? S 0:00 [cpuhp/27] + 147 ? S 0:21 [migration/27] + 148 ? S 0:00 [ksoftirqd/27] + 150 ? I< 0:00 [kworker/27:0H-kblockd] + 151 ? S 0:00 [cpuhp/28] + 152 ? S 0:21 [migration/28] + 153 ? S 0:00 [ksoftirqd/28] + 155 ? I< 0:00 [kworker/28:0H-kblockd] + 157 ? S 0:00 [cpuhp/29] + 158 ? S 0:21 [migration/29] + 159 ? S 0:00 [ksoftirqd/29] + 161 ? I< 0:00 [kworker/29:0H] + 162 ? S 0:00 [cpuhp/30] + 163 ? S 0:21 [migration/30] + 164 ? S 0:00 [ksoftirqd/30] + 166 ? I< 0:00 [kworker/30:0H-kblockd] + 167 ? S 0:00 [cpuhp/31] + 168 ? S 0:21 [migration/31] + 169 ? S 0:00 [ksoftirqd/31] + 171 ? I< 0:00 [kworker/31:0H-kblockd] + 172 ? S 0:00 [cpuhp/32] + 173 ? S 0:21 [migration/32] + 174 ? S 0:00 [ksoftirqd/32] + 176 ? I< 0:00 [kworker/32:0H-kblockd] + 177 ? S 0:00 [cpuhp/33] + 178 ? S 0:21 [migration/33] + 179 ? S 0:00 [ksoftirqd/33] + 181 ? I< 0:00 [kworker/33:0H-kblockd] + 182 ? S 0:00 [cpuhp/34] + 183 ? S 0:21 [migration/34] + 184 ? S 0:00 [ksoftirqd/34] + 186 ? I< 0:00 [kworker/34:0H-kblockd] + 187 ? S 0:00 [cpuhp/35] + 188 ? S 0:21 [migration/35] + 189 ? S 0:00 [ksoftirqd/35] + 191 ? I< 0:00 [kworker/35:0H-kblockd] + 192 ? S 0:00 [cpuhp/36] + 193 ? S 0:21 [migration/36] + 194 ? S 0:00 [ksoftirqd/36] + 196 ? I< 0:00 [kworker/36:0H] + 197 ? S 0:00 [cpuhp/37] + 198 ? S 0:21 [migration/37] + 199 ? S 0:00 [ksoftirqd/37] + 201 ? I< 0:00 [kworker/37:0H] + 202 ? S 0:00 [cpuhp/38] + 203 ? S 0:21 [migration/38] + 204 ? S 0:00 [ksoftirqd/38] + 206 ? I< 0:00 [kworker/38:0H] + 207 ? S 0:00 [cpuhp/39] + 208 ? S 0:21 [migration/39] + 209 ? S 0:00 [ksoftirqd/39] + 211 ? I< 0:00 [kworker/39:0H] + 212 ? S 0:00 [cpuhp/40] + 213 ? S 0:21 [migration/40] + 214 ? S 0:00 [ksoftirqd/40] + 216 ? I< 0:00 [kworker/40:0H-kblockd] + 217 ? S 0:00 [cpuhp/41] + 218 ? S 0:21 [migration/41] + 219 ? S 0:00 [ksoftirqd/41] + 221 ? I< 0:00 [kworker/41:0H-kblockd] + 222 ? S 0:00 [cpuhp/42] + 223 ? S 0:21 [migration/42] + 224 ? S 0:00 [ksoftirqd/42] + 226 ? I< 0:00 [kworker/42:0H-kblockd] + 227 ? S 0:00 [cpuhp/43] + 228 ? S 0:21 [migration/43] + 229 ? S 0:00 [ksoftirqd/43] + 231 ? I< 0:00 [kworker/43:0H-kblockd] + 232 ? S 0:00 [cpuhp/44] + 233 ? S 0:21 [migration/44] + 234 ? S 0:00 [ksoftirqd/44] + 236 ? I< 0:00 [kworker/44:0H] + 237 ? S 0:00 [cpuhp/45] + 238 ? S 0:21 [migration/45] + 239 ? S 0:00 [ksoftirqd/45] + 241 ? I< 0:00 [kworker/45:0H-kblockd] + 242 ? S 0:00 [cpuhp/46] + 243 ? S 0:21 [migration/46] + 244 ? S 0:00 [ksoftirqd/46] + 246 ? I< 0:00 [kworker/46:0H-kblockd] + 247 ? S 0:00 [cpuhp/47] + 248 ? S 0:21 [migration/47] + 249 ? S 0:00 [ksoftirqd/47] + 251 ? I< 0:00 [kworker/47:0H-kblockd] + 252 ? S 0:00 [cpuhp/48] + 253 ? S 0:21 [migration/48] + 254 ? S 0:00 [ksoftirqd/48] + 256 ? I< 0:00 [kworker/48:0H-kblockd] + 257 ? S 0:00 [cpuhp/49] + 258 ? S 0:21 [migration/49] + 259 ? S 0:00 [ksoftirqd/49] + 261 ? I< 0:00 [kworker/49:0H-kblockd] + 262 ? S 0:00 [cpuhp/50] + 263 ? S 0:21 [migration/50] + 264 ? S 0:00 [ksoftirqd/50] + 266 ? I< 0:00 [kworker/50:0H] + 267 ? S 0:00 [cpuhp/51] + 268 ? S 0:21 [migration/51] + 269 ? S 0:00 [ksoftirqd/51] + 271 ? I< 0:00 [kworker/51:0H] + 272 ? S 0:00 [cpuhp/52] + 273 ? S 0:21 [migration/52] + 274 ? S 0:00 [ksoftirqd/52] + 276 ? I< 0:00 [kworker/52:0H-kblockd] + 277 ? S 0:00 [cpuhp/53] + 278 ? S 0:21 [migration/53] + 279 ? S 0:00 [ksoftirqd/53] + 281 ? I< 0:00 [kworker/53:0H-kblockd] + 282 ? S 0:00 [cpuhp/54] + 283 ? S 0:21 [migration/54] + 284 ? S 0:00 [ksoftirqd/54] + 286 ? I< 0:00 [kworker/54:0H-kblockd] + 287 ? S 0:00 [cpuhp/55] + 288 ? S 0:22 [migration/55] + 289 ? S 0:00 [ksoftirqd/55] + 291 ? I< 0:00 [kworker/55:0H-kblockd] + 292 ? S 0:00 [cpuhp/56] + 293 ? S 0:22 [migration/56] + 294 ? S 0:00 [ksoftirqd/56] + 296 ? I< 0:00 [kworker/56:0H-kblockd] + 297 ? S 0:00 [cpuhp/57] + 298 ? S 0:22 [migration/57] + 299 ? S 0:00 [ksoftirqd/57] + 301 ? I< 0:00 [kworker/57:0H-kblockd] + 302 ? S 0:00 [cpuhp/58] + 303 ? S 0:22 [migration/58] + 304 ? S 0:00 [ksoftirqd/58] + 306 ? I< 0:00 [kworker/58:0H-kblockd] + 307 ? S 0:00 [cpuhp/59] + 308 ? S 0:22 [migration/59] + 309 ? S 0:00 [ksoftirqd/59] + 311 ? I< 0:00 [kworker/59:0H-kblockd] + 312 ? S 0:00 [cpuhp/60] + 313 ? S 0:22 [migration/60] + 314 ? S 0:00 [ksoftirqd/60] + 316 ? I< 0:00 [kworker/60:0H-kblockd] + 317 ? S 0:00 [cpuhp/61] + 318 ? S 0:22 [migration/61] + 319 ? S 0:00 [ksoftirqd/61] + 321 ? I< 0:00 [kworker/61:0H-kblockd] + 322 ? S 0:00 [cpuhp/62] + 323 ? S 0:22 [migration/62] + 324 ? S 0:00 [ksoftirqd/62] + 326 ? I< 0:00 [kworker/62:0H-kblockd] + 327 ? S 0:00 [cpuhp/63] + 328 ? S 0:22 [migration/63] + 329 ? S 0:00 [ksoftirqd/63] + 331 ? I< 0:00 [kworker/63:0H-kblockd] + 332 ? S 0:00 [cpuhp/64] + 333 ? S 0:22 [migration/64] + 334 ? S 0:00 [ksoftirqd/64] + 336 ? I< 0:00 [kworker/64:0H-kblockd] + 337 ? S 0:00 [cpuhp/65] + 338 ? S 0:22 [migration/65] + 339 ? S 0:00 [ksoftirqd/65] + 341 ? I< 0:00 [kworker/65:0H] + 342 ? S 0:00 [cpuhp/66] + 343 ? S 0:22 [migration/66] + 344 ? S 0:00 [ksoftirqd/66] + 346 ? I< 0:00 [kworker/66:0H-kblockd] + 347 ? S 0:00 [cpuhp/67] + 348 ? S 0:22 [migration/67] + 349 ? S 0:00 [ksoftirqd/67] + 351 ? I< 0:00 [kworker/67:0H-kblockd] + 352 ? S 0:00 [cpuhp/68] + 353 ? S 0:22 [migration/68] + 354 ? S 0:00 [ksoftirqd/68] + 356 ? I< 0:00 [kworker/68:0H-kblockd] + 357 ? S 0:00 [cpuhp/69] + 358 ? S 0:22 [migration/69] + 359 ? S 0:00 [ksoftirqd/69] + 361 ? I< 0:00 [kworker/69:0H-kblockd] + 362 ? S 0:00 [cpuhp/70] + 363 ? S 0:22 [migration/70] + 364 ? S 0:00 [ksoftirqd/70] + 366 ? I< 0:00 [kworker/70:0H-kblockd] + 367 ? S 0:00 [cpuhp/71] + 368 ? S 0:22 [migration/71] + 369 ? S 0:00 [ksoftirqd/71] + 371 ? I< 0:00 [kworker/71:0H] + 372 ? S 0:00 [cpuhp/72] + 373 ? S 0:22 [migration/72] + 374 ? S 0:00 [ksoftirqd/72] + 376 ? I< 0:00 [kworker/72:0H-kblockd] + 377 ? S 0:00 [cpuhp/73] + 378 ? S 0:22 [migration/73] + 379 ? S 0:00 [ksoftirqd/73] + 381 ? I< 0:00 [kworker/73:0H-kblockd] + 382 ? S 0:00 [cpuhp/74] + 383 ? S 0:22 [migration/74] + 384 ? S 0:00 [ksoftirqd/74] + 386 ? I< 0:00 [kworker/74:0H-kblockd] + 387 ? S 0:00 [cpuhp/75] + 388 ? S 0:22 [migration/75] + 389 ? S 0:00 [ksoftirqd/75] + 391 ? I< 0:00 [kworker/75:0H-kblockd] + 392 ? S 0:00 [cpuhp/76] + 393 ? S 0:22 [migration/76] + 394 ? S 0:00 [ksoftirqd/76] + 396 ? I< 0:00 [kworker/76:0H] + 397 ? S 0:00 [cpuhp/77] + 398 ? S 0:22 [migration/77] + 399 ? S 0:00 [ksoftirqd/77] + 401 ? I< 0:00 [kworker/77:0H-kblockd] + 479 ? S 0:00 [cpuhp/78] + 480 ? S 0:22 [migration/78] + 481 ? S 0:00 [ksoftirqd/78] + 483 ? I< 0:00 [kworker/78:0H-kblockd] + 484 ? S 0:00 [cpuhp/79] + 485 ? S 0:22 [migration/79] + 486 ? S 0:00 [ksoftirqd/79] + 488 ? I< 0:00 [kworker/79:0H-kblockd] + 489 ? S 0:00 [cpuhp/80] + 490 ? S 0:22 [migration/80] + 491 ? S 0:00 [ksoftirqd/80] + 493 ? I< 0:00 [kworker/80:0H-kblockd] + 494 ? S 0:00 [cpuhp/81] + 495 ? S 0:22 [migration/81] + 496 ? S 0:00 [ksoftirqd/81] + 498 ? I< 0:00 [kworker/81:0H-kblockd] + 499 ? S 0:00 [cpuhp/82] + 500 ? S 0:22 [migration/82] + 501 ? S 0:00 [ksoftirqd/82] + 503 ? I< 0:00 [kworker/82:0H-kblockd] + 504 ? S 0:00 [cpuhp/83] + 505 ? S 0:22 [migration/83] + 506 ? S 0:00 [ksoftirqd/83] + 508 ? I< 0:00 [kworker/83:0H-kblockd] + 509 ? S 0:00 [cpuhp/84] + 510 ? S 0:22 [migration/84] + 511 ? S 0:00 [ksoftirqd/84] + 513 ? I< 0:00 [kworker/84:0H-kblockd] + 514 ? S 0:00 [cpuhp/85] + 515 ? S 0:22 [migration/85] + 516 ? S 0:00 [ksoftirqd/85] + 518 ? I< 0:00 [kworker/85:0H-kblockd] + 519 ? S 0:00 [cpuhp/86] + 520 ? S 0:22 [migration/86] + 521 ? S 0:00 [ksoftirqd/86] + 523 ? I< 0:00 [kworker/86:0H-kblockd] + 524 ? S 0:00 [cpuhp/87] + 525 ? S 0:22 [migration/87] + 526 ? S 0:00 [ksoftirqd/87] + 528 ? I< 0:00 [kworker/87:0H] + 529 ? S 0:00 [cpuhp/88] + 530 ? S 0:22 [migration/88] + 531 ? S 0:00 [ksoftirqd/88] + 533 ? I< 0:00 [kworker/88:0H-kblockd] + 534 ? S 0:00 [cpuhp/89] + 535 ? S 0:22 [migration/89] + 536 ? S 0:00 [ksoftirqd/89] + 538 ? I< 0:00 [kworker/89:0H] + 539 ? S 0:00 [cpuhp/90] + 540 ? S 0:22 [migration/90] + 541 ? S 0:00 [ksoftirqd/90] + 543 ? I< 0:00 [kworker/90:0H] + 544 ? S 0:00 [cpuhp/91] + 545 ? S 0:22 [migration/91] + 546 ? S 0:00 [ksoftirqd/91] + 548 ? I< 0:00 [kworker/91:0H] + 549 ? S 0:00 [cpuhp/92] + 550 ? S 0:22 [migration/92] + 551 ? S 0:00 [ksoftirqd/92] + 553 ? I< 0:00 [kworker/92:0H-kblockd] + 554 ? S 0:00 [cpuhp/93] + 555 ? S 0:22 [migration/93] + 556 ? S 0:00 [ksoftirqd/93] + 558 ? I< 0:00 [kworker/93:0H-kblockd] + 559 ? S 0:00 [cpuhp/94] + 560 ? S 0:22 [migration/94] + 561 ? S 0:00 [ksoftirqd/94] + 563 ? I< 0:00 [kworker/94:0H-kblockd] + 564 ? S 0:00 [cpuhp/95] + 565 ? S 0:22 [migration/95] + 566 ? S 0:00 [ksoftirqd/95] + 568 ? I< 0:00 [kworker/95:0H-kblockd] + 569 ? S 0:00 [cpuhp/96] + 570 ? S 0:22 [migration/96] + 571 ? S 0:00 [ksoftirqd/96] + 573 ? I< 0:00 [kworker/96:0H-kblockd] + 574 ? S 0:00 [cpuhp/97] + 575 ? S 0:22 [migration/97] + 576 ? S 0:00 [ksoftirqd/97] + 578 ? I< 0:00 [kworker/97:0H-kblockd] + 579 ? S 0:00 [cpuhp/98] + 580 ? S 0:22 [migration/98] + 581 ? S 0:00 [ksoftirqd/98] + 583 ? I< 0:00 [kworker/98:0H-kblockd] + 584 ? S 0:00 [cpuhp/99] + 585 ? S 0:22 [migration/99] + 586 ? S 0:00 [ksoftirqd/99] + 588 ? I< 0:00 [kworker/99:0H-kblockd] + 589 ? S 0:00 [cpuhp/100] + 590 ? S 0:22 [migration/100] + 591 ? S 0:00 [ksoftirqd/100] + 593 ? I< 0:00 [kworker/100:0H-kblockd] + 594 ? S 0:00 [cpuhp/101] + 595 ? S 0:22 [migration/101] + 596 ? S 0:00 [ksoftirqd/101] + 598 ? I< 0:00 [kworker/101:0H] + 599 ? S 0:00 [cpuhp/102] + 600 ? S 0:22 [migration/102] + 601 ? S 0:00 [ksoftirqd/102] + 603 ? I< 0:00 [kworker/102:0H] + 604 ? S 0:00 [cpuhp/103] + 605 ? S 0:22 [migration/103] + 606 ? S 0:00 [ksoftirqd/103] + 608 ? I< 0:00 [kworker/103:0H] + 609 ? S 0:00 [cpuhp/104] + 610 ? S 0:22 [migration/104] + 611 ? S 0:00 [ksoftirqd/104] + 613 ? I< 0:00 [kworker/104:0H-kblockd] + 614 ? S 0:00 [cpuhp/105] + 615 ? S 0:22 [migration/105] + 616 ? S 0:00 [ksoftirqd/105] + 618 ? I< 0:00 [kworker/105:0H-kblockd] + 619 ? S 0:00 [cpuhp/106] + 620 ? S 0:22 [migration/106] + 621 ? S 0:00 [ksoftirqd/106] + 623 ? I< 0:00 [kworker/106:0H-kblockd] + 624 ? S 0:00 [cpuhp/107] + 625 ? S 0:22 [migration/107] + 626 ? S 0:00 [ksoftirqd/107] + 628 ? I< 0:00 [kworker/107:0H-kblockd] + 629 ? S 0:00 [cpuhp/108] + 630 ? S 0:22 [migration/108] + 631 ? S 0:00 [ksoftirqd/108] + 633 ? I< 0:00 [kworker/108:0H-kblockd] + 634 ? S 0:00 [cpuhp/109] + 635 ? S 0:22 [migration/109] + 636 ? S 0:00 [ksoftirqd/109] + 638 ? I< 0:00 [kworker/109:0H-kblockd] + 639 ? S 0:00 [cpuhp/110] + 640 ? S 0:22 [migration/110] + 641 ? S 0:00 [ksoftirqd/110] + 643 ? I< 0:00 [kworker/110:0H-kblockd] + 644 ? S 0:00 [cpuhp/111] + 645 ? S 0:22 [migration/111] + 646 ? S 0:00 [ksoftirqd/111] + 648 ? I< 0:00 [kworker/111:0H-kblockd] + 649 ? S 0:00 [kdevtmpfs] + 650 ? I< 0:00 [netns] + 651 ? S 0:01 [kauditd] + 654 ? S 0:01 [khungtaskd] + 655 ? S 0:00 [oom_reaper] + 656 ? I< 0:00 [writeback] + 657 ? S 0:00 [kcompactd0] + 658 ? S 0:00 [kcompactd1] + 659 ? SN 0:00 [ksmd] + 660 ? SN 0:13 [khugepaged] + 661 ? I< 0:00 [crypto] + 662 ? I< 0:00 [kintegrityd] + 663 ? I< 0:00 [kblockd] + 698 ? I< 0:00 [edac-poller] + 699 ? I< 0:00 [devfreq_wq] + 700 ? S 0:00 [watchdogd] + 701 ? S 0:00 [kswapd0] + 702 ? S 0:00 [kswapd1] + 720 ? I< 0:00 [kthrotld] + 721 ? I< 0:00 [ipv6_addrconf] + 731 ? I< 0:00 [kstrp] + 897 ? I< 0:00 [ixgbe] + 898 ? I< 0:00 [ata_sff] + 947 ? S 0:00 [scsi_eh_0] + 948 ? I< 0:00 [scsi_tmf_0] + 949 ? S 0:00 [scsi_eh_1] + 950 ? I< 0:00 [scsi_tmf_1] + 951 ? S 0:00 [scsi_eh_2] + 952 ? I< 0:00 [scsi_tmf_2] + 953 ? S 0:00 [scsi_eh_3] + 954 ? I< 0:00 [scsi_tmf_3] + 955 ? S 0:00 [scsi_eh_4] + 956 ? I< 0:00 [scsi_tmf_4] + 957 ? S 0:00 [scsi_eh_5] + 958 ? I< 0:00 [scsi_tmf_5] + 964 ? I< 0:00 [kworker/30:1H-events_highpri] + 970 ? I< 0:00 [kdmflush] + 976 ? I< 0:00 [kdmflush] + 991 ? I< 0:00 [kworker/9:1H-events_highpri] + 1002 ? I< 0:00 [kworker/20:1H-events_highpri] + 1003 ? I< 0:07 [kworker/10:1H-kblockd] + 1005 ? I< 0:00 [kworker/97:1H-events_highpri] + 1008 ? I< 0:00 [kworker/u227:0] + 1012 ? I< 0:00 [kworker/21:1H-events_highpri] + 1013 ? S 0:21 [jbd2/dm-0-8] + 1014 ? I< 0:00 [ext4-rsv-conver] + 1015 ? I< 0:00 [kworker/17:1H-events_highpri] + 1020 ? I< 0:00 [kworker/24:1H-events_highpri] + 1024 ? I< 0:00 [kworker/74:1H-events_highpri] + 1026 ? I< 0:00 [kworker/78:1H-events_highpri] + 1029 ? I< 0:00 [kworker/79:1H-events_highpri] + 1031 ? I< 0:00 [kworker/73:1H-events_highpri] + 1033 ? I< 0:00 [kworker/19:1H-events_highpri] + 1038 ? I< 0:00 [kworker/82:1H-events_highpri] + 1050 ? I< 0:00 [kworker/29:1H-events_highpri] + 1052 ? I< 0:00 [kworker/87:1H-events_highpri] + 1053 ? I< 0:00 [kworker/85:1H-events_highpri] + 1054 ? I< 0:00 [kworker/6:1H-events_highpri] + 1055 ? I< 0:00 [kworker/72:1H-events_highpri] + 1058 ? I< 0:00 [kworker/1:1H-kblockd] + 1059 ? I< 0:00 [kworker/57:1H-events_highpri] + 1071 ? I< 0:00 [kworker/83:1H-events_highpri] + 1074 ? I< 0:00 [kworker/76:1H-events_highpri] + 1076 ? I< 0:00 [kworker/58:1H-events_highpri] + 1079 ? I< 0:00 [kworker/59:1H-events_highpri] + 1080 ? I< 0:00 [rpciod] + 1081 ? I< 0:00 [xprtiod] + 1083 ? S 0:00 [nv_queue] + 1084 ? S 0:00 [nv_queue] + 1086 ? I< 0:00 [kworker/75:1H-events_highpri] + 1089 ? I< 0:00 [kworker/22:1H-events_highpri] + 1092 ? S 0:00 [nvidia-modeset/] + 1093 ? S 0:00 [nvidia-modeset/] + 1095 ? Ss 0:08 /lib/systemd/systemd-journald + 1103 ? I< 0:00 [kworker/69:1H-events_highpri] + 1104 ? I< 0:00 [kworker/13:1H-events_highpri] + 1107 ? I< 0:00 [kworker/15:1H-events_highpri] + 1109 ? Ss 0:01 /lib/systemd/systemd-udevd + 1120 ? I< 0:00 [kworker/77:1H-events_highpri] + 1124 ? I< 0:00 [kworker/26:1H-events_highpri] + 1237 ? I< 0:00 [kworker/61:1H-events_highpri] + 1260 ? I< 0:00 [ipmi-msghandler] + 1261 ? I< 0:00 [kworker/84:1H-events_highpri] + 1262 ? I< 0:00 [kworker/7:1H-events_highpri] + 1265 ? I< 0:00 [kworker/25:1H-events_highpri] + 1271 ? I< 0:00 [kworker/102:1H-events_highpri] + 1273 ? I< 0:00 [kworker/53:1H-kblockd] + 1275 ? I< 0:00 [kworker/106:1H-events_highpri] + 1306 ? S 0:00 [irq/266-mei_me] + 1308 ? I< 0:00 [kworker/11:1H-kblockd] + 1309 ? I< 0:00 [kworker/36:1H-events_highpri] + 1311 ? I< 0:00 [ttm_swap] + 1315 ? I< 0:00 [kworker/3:1H-events_highpri] + 1322 ? I< 0:00 [kdmflush] + 1323 ? I< 0:00 [kdmflush] + 1325 ? I< 0:00 [kworker/45:1H-events_highpri] + 1326 ? I< 0:00 [kdmflush] + 1328 ? I< 0:00 [kdmflush] + 1330 ? I< 0:00 [kdmflush] + 1332 ? I< 0:00 [kdmflush] + 1335 ? I< 0:00 [kdmflush] + 1337 ? I< 0:00 [kdmflush] + 1355 ? SN 0:00 [kipmi0] + 1360 ? I< 0:00 [kworker/66:1H-events_highpri] + 1372 ? I< 0:00 [kworker/27:1H-kblockd] + 1383 ? I< 0:00 [kworker/51:1H-events_highpri] + 1390 ? I< 0:00 [kworker/16:1H-events_highpri] + 1393 ? S 0:00 [jbd2/sda1-8] + 1394 ? I< 0:00 [ext4-rsv-conver] + 1400 ? I< 0:00 [kworker/60:1H-events_highpri] + 1401 ? S 0:09 [jbd2/dm-2-8] + 1402 ? I< 0:00 [ext4-rsv-conver] + 1404 ? I< 0:00 [kworker/5:1H-kblockd] + 1405 ? S 0:04 [jbd2/dm-3-8] + 1406 ? I< 0:00 [ext4-rsv-conver] + 1408 ? I< 0:00 [kworker/62:1H-events_highpri] + 1409 ? S 0:00 [jbd2/dm-7-8] + 1410 ? I< 0:00 [ext4-rsv-conver] + 1412 ? I< 0:00 [kworker/63:1H-events_highpri] + 1413 ? S 0:00 [jbd2/dm-8-8] + 1414 ? I< 0:00 [ext4-rsv-conver] + 1416 ? I< 0:00 [kworker/64:1H-events_highpri] + 1417 ? S 0:06 [jbd2/dm-9-8] + 1418 ? I< 0:00 [ext4-rsv-conver] + 1420 ? S 0:03 [jbd2/dm-6-8] + 1421 ? I< 0:00 [ext4-rsv-conver] + 1423 ? S 0:14 [jbd2/dm-4-8] + 1424 ? I< 0:00 [ext4-rsv-conver] + 1427 ? S 0:00 [jbd2/dm-5-8] + 1428 ? I< 0:00 [ext4-rsv-conver] + 1434 ? I< 0:00 [kworker/18:1H-events_highpri] + 1438 ? I< 0:00 [kworker/56:1H-events_highpri] + 1442 ? I< 0:00 [kworker/68:1H-kblockd] + 1443 ? I< 0:00 [kworker/65:1H-events_highpri] + 1447 ? I< 0:00 [kworker/23:1H-events_highpri] + 1455 ? Ss 0:00 /sbin/dhclient -4 -v -i -pf /run/dhclient.eno2.pid -lf /var/lib/dhcp/dhclient.eno2.leases -I -df /var/lib/dhcp/dhclient6.eno2.leases eno2 + 1464 ? I< 0:00 [kworker/81:1H-events_highpri] + 1467 ? I< 0:00 [kworker/38:1H-events_highpri] + 1468 ? I< 0:00 [kworker/37:1H-events_highpri] + 1469 ? I< 0:00 [kworker/39:1H-events_highpri] + 1472 ? I< 0:00 [kworker/71:1H-kblockd] + 1476 ? I< 0:00 [kworker/34:1H-events_highpri] + 1477 ? Ss 0:00 /usr/sbin/rpc.gssd + 1483 ? Ss 0:00 /sbin/rpcbind -f -w + 1484 ? I< 0:00 [kworker/88:1H-events_highpri] + 1486 ? I< 0:00 [kworker/8:1H-events_highpri] + 1488 ? I 0:00 [kworker/u224:1-ixgbe] + 1489 ? Ss 0:00 /usr/bin/dbus-daemon --system --address=systemd: --nofork --nopidfile --systemd-activation --syslog-only + 1493 ? Ssl 0:22 /usr/sbin/nscd + 1499 ? Ss 0:11 /usr/bin/nvidia-persistenced --user nvpd + 1508 ? S 0:00 [irq/267-nvidia] + 1509 ? S 0:00 [irq/268-nvidia] + 1510 ? S 0:00 [irq/269-nvidia] + 1511 ? Ssl 0:24 /usr/sbin/rsyslogd -n -iNONE + 1512 ? S 0:00 [irq/270-nvidia] + 1513 ? S 0:00 [irq/271-nvidia] + 1514 ? S 0:00 [irq/272-nvidia] + 1515 ? S 0:00 [nvidia] + 1516 ? S 0:00 [nv_queue] + 1517 ? Ss 0:00 /usr/sbin/rasdaemon -f -r + 1523 ? Ss 0:01 /lib/systemd/systemd-logind + 1524 ? Ss 0:00 /usr/sbin/smartd -n + 1526 ? I< 0:00 [kworker/14:1H-kblockd] + 1530 ? S 0:00 [irq/273-nvidia] + 1531 ? S 0:00 [irq/274-nvidia] + 1532 ? S 0:00 [irq/275-nvidia] + 1533 ? S 0:00 [irq/276-nvidia] + 1534 ? S 0:00 [irq/277-nvidia] + 1535 ? S 0:00 [irq/278-nvidia] + 1536 ? S 0:00 [nvidia] + 1537 ? S 0:00 [nv_queue] + 1613 ? I< 0:00 [kworker/49:1H-events_highpri] + 1652 ? I< 0:00 [kworker/32:1H-events_highpri] + 1661 ? I< 0:00 [kworker/43:1H-events_highpri] + 1669 ? I< 0:00 [nfsiod] + 1679 ? I< 0:00 [kworker/47:1H-events_highpri] + 1681 ? I< 0:00 [kworker/109:1H-events_highpri] + 1683 ? Ssl 0:00 /usr/bin/python3 /usr/share/unattended-upgrades/unattended-upgrade-shutdown --wait-for-signal + 1684 ? I< 0:00 [kworker/111:1H-events_highpri] + 1690 ? I< 0:00 [kworker/55:1H-events_highpri] + 1718 ? I< 0:00 [kworker/89:1H-events_highpri] + 1725 ? I< 0:00 [kworker/31:1H-events_highpri] + 1730 ? Ssl 0:35 /usr/sbin/ntpd -p /var/run/ntpd.pid -g -u 106:112 + 1732 ? I< 0:00 [kworker/50:1H-events_highpri] + 1738 ? I< 0:00 [kworker/96:1H-events_highpri] + 1781 ? I< 0:00 [kworker/86:1H-events_highpri] + 1783 ? Ssl 37:38 splunkd --under-systemd --systemd-delegate=yes -p 8089 _internal_launch_under_systemd + 1785 ? I< 0:00 [kworker/0:1H-events_highpri] + 1786 ? S 0:00 [afs_pagecopy] + 1800 ? Ss 0:00 /opt/nessus_agent/sbin/nessus-service -q + 1801 ? I< 0:00 [kworker/46:1H-events_highpri] + 1803 ? I< 0:00 [kworker/42:1H-events_highpri] + 1806 ? Ss 0:00 /usr/sbin/sshd -D + 1813 ? I< 0:00 [kworker/93:1H-events_highpri] + 1815 ? Ssl 12:18 /usr/bin/containerd + 1816 ? I< 0:00 [kworker/108:1H-events_highpri] + 1824 ? S 0:00 [afs_callback] + 1825 ? S 5:39 [afs_rxlistener] + 1826 ? S 0:27 [afs_rxevent] + 1827 ? Ss 0:00 /sbin/afsd -afsdb -dynroot -fakestat + 1828 ? I< 0:00 [kworker/101:1H-events_highpri] + 1836 ? S 0:16 [afsd] + 1837 ? S 0:03 [afs_checkserver] + 1840 ? S 0:55 [afs_background] + 1841 ? S 0:47 [afs_background] + 1842 ? S 0:49 [afs_background] + 1843 ? S 1:08 [afs_background] + 1856 ? S 0:08 [afs_cachetrim] + 1895 ? I< 0:00 [kworker/41:1H-events_highpri] + 1902 ? Ssl 10:03 /usr/bin/dockerd -H fd:// --containerd=/run/containerd/containerd.sock + 1905 ? I< 0:00 [kworker/44:1H-events_highpri] + 1914 ? I< 0:00 [kworker/90:1H-events_highpri] + 1915 ? I< 0:00 [kworker/91:1H-events_highpri] + 1944 ? I< 0:00 [kworker/48:1H-events_highpri] + 1956 ? I< 0:00 [kworker/103:1H-events_highpri] + 1999 ? Ss 0:03 /usr/lib/postfix/sbin/master -w + 2001 ? S 0:00 qmgr -l -t unix -u + 2004 ? I< 0:00 [kworker/104:1H-events_highpri] + 2046 ? I< 0:00 [kworker/110:1H-events_highpri] + 2055 ? I< 0:00 [kworker/28:1H-events_highpri] + 2208 ? S 0:00 [NFSv4 callback] + 2288 ? Ss 0:01 /usr/sbin/cron -f + 2289 ? Ss 0:00 [splunkd pid=1783] splunkd --under-systemd --systemd-delegate=yes -p 8089 _internal_launch_under_systemd [process-runner] + 2292 ? Ssl 0:11 /usr/sbin/automount --pid-file /var/run/autofs.pid + 2295 ? I< 0:00 [kworker/92:1H-events_highpri] + 2299 ttyS1 Ss+ 0:00 /sbin/agetty -o -p -- \u --keep-baud 115200,38400,9600 ttyS1 vt220 + 2300 tty1 Ss+ 0:00 /sbin/agetty -o -p -- \u --noclear tty1 linux + 2327 ? I< 0:00 [kworker/12:1H-events_highpri] + 2345 ? I< 0:00 [kworker/2:1H-events_highpri] + 2383 ? I< 0:00 [kworker/80:1H-events_highpri] + 2385 ? S 0:00 [irq/279-nvidia] + 2386 ? S 0:00 [irq/280-nvidia] + 2387 ? S 0:00 [irq/281-nvidia] + 2388 ? S 0:00 [irq/282-nvidia] + 2389 ? S 0:00 [irq/283-nvidia] + 2390 ? S 0:00 [irq/284-nvidia] + 2391 ? S 0:00 [nvidia] + 2392 ? S 0:00 [nv_queue] + 2394 ? I< 0:00 [kworker/52:1H-events_highpri] + 2398 ? S 0:00 [irq/285-nvidia] + 2399 ? S 0:00 [irq/286-nvidia] + 2400 ? S 0:00 [irq/287-nvidia] + 2401 ? S 0:00 [irq/288-nvidia] + 2402 ? S 0:00 [irq/289-nvidia] + 2403 ? S 0:00 [irq/290-nvidia] + 2404 ? S 0:00 [nvidia] + 2405 ? S 0:00 [nv_queue] + 2407 ? S 0:00 /usr/sbin/slurmd + 2422 ? I< 0:00 [kworker/4:1H-kblockd] + 3096 ? I< 0:00 [kworker/70:1H-events_highpri] + 3133 ? I< 0:00 [kworker/95:1H-events_highpri] + 3157 ? I< 0:00 [kworker/67:1H-events_highpri] + 3354 ? I< 0:00 [kworker/98:1H-events_highpri] + 3403 ? I< 0:00 [kworker/33:1H-events_highpri] + 3466 ? I< 0:00 [kworker/35:1H-events_highpri] + 3575 ? S 0:00 [UVM global queu] + 3576 ? S 0:00 [UVM deferred re] + 3577 ? S 0:00 [UVM Tools Event] + 3719 ? I< 0:00 [kworker/40:1H-events_highpri] + 5579 ? I< 0:00 [kworker/94:1H-events_highpri] + 9929 ? I< 0:00 [kworker/105:1H-events_highpri] + 11965 ? I< 0:00 [kworker/99:1H-events_highpri] + 12161 ? I< 0:00 [kworker/100:1H-events_highpri] + 12973 ? I< 0:00 [kworker/54:1H-events_highpri] + 13254 ? I< 0:00 [kworker/107:1H-events_highpri] + 41529 ? Ss 0:00 sshd: rico [priv] + 41541 ? S 0:02 sshd: rico + 42537 ? Sl 0:05 /usr/sbin/munged + 44261 ? I 0:00 [kworker/107:0-mm_percpu_wq] + 45584 ? I 0:02 [kworker/39:0-events] + 45644 ? I 0:00 [kworker/40:3-events] + 45658 ? I 0:01 [kworker/54:0-events] + 46744 ? I 0:00 [kworker/94:0-events] + 48334 ? I 0:00 [kworker/44:2-events] + 48361 ? I 0:00 [kworker/47:0-rcu_gp] + 49993 ? I 0:00 [kworker/51:0-events] + 50341 ? I 0:00 [kworker/53:1-events] + 50919 ? I 0:00 [kworker/55:0-events] + 50965 ? I 0:00 [kworker/85:2-events] + 51446 ? S 0:00 nessusd -q + 51447 ? Sl 10:08 /opt/nessus_agent/sbin/nessus-agent-module -q + 54341 ? I 0:00 [kworker/73:2-events] + 54425 ? I 0:01 [kworker/82:1-events] + 54438 ? I 0:00 [kworker/69:0-events] + 54483 ? I 0:00 [kworker/77:1-events] + 55648 ? I 0:01 [kworker/6:0-events] + 55691 ? I 0:00 [kworker/62:2-events] + 55737 ? I 0:00 [kworker/64:0-events] + 55855 ? I 0:00 [kworker/2:0-events] + 55864 ? I 0:01 [kworker/11:0-events] + 55883 ? I 0:01 [kworker/2:2-events] + 55893 ? I 0:00 [kworker/16:2-events] + 55921 ? Ss 0:00 sshd: dzb5732 [priv] + 55935 ? S 0:00 sshd: dzb5732@notty + 55936 ? Ss 0:00 bash + 55995 ? S 0:00 sh /data6/deepro/tmp/.vscode-server/bin/31c37ee8f63491495ac49e43b8544550fbae4533/bin/code-server --start-server --host=127.0.0.1 --accept-server-license-terms --enable-remote-auto-shutdown --telemetry-level all --socket-path=/tmp/vscode-ssh-remote-server-sock-1708700833 --connection-token-file /data6/deepro/tmp/.vscode-server/.31c37ee8f63491495ac49e43b8544550fbae4533.token + 56064 ? Sl 0:31 /data6/deepro/tmp/.vscode-server/bin/31c37ee8f63491495ac49e43b8544550fbae4533/node /data6/deepro/tmp/.vscode-server/bin/31c37ee8f63491495ac49e43b8544550fbae4533/out/server-main.js --start-server --host=127.0.0.1 --accept-server-license-terms --enable-remote-auto-shutdown --telemetry-level all --socket-path=/tmp/vscode-ssh-remote-server-sock-1708700833 --connection-token-file /data6/deepro/tmp/.vscode-server/.31c37ee8f63491495ac49e43b8544550fbae4533.token + 56107 ? Ss 0:00 sshd: dzb5732 [priv] + 56140 ? S 0:07 sshd: dzb5732@notty + 56141 ? Ss 0:00 bash + 56157 ? Sl 2:18 /data6/deepro/tmp/.vscode-server/bin/31c37ee8f63491495ac49e43b8544550fbae4533/node --dns-result-order=ipv4first /data6/deepro/tmp/.vscode-server/bin/31c37ee8f63491495ac49e43b8544550fbae4533/out/bootstrap-fork --type=extensionHost --transformURIs --useHostProxy=false + 56164 ? Sl 0:16 /data6/deepro/tmp/.vscode-server/bin/31c37ee8f63491495ac49e43b8544550fbae4533/node /data6/deepro/tmp/.vscode-server/bin/31c37ee8f63491495ac49e43b8544550fbae4533/out/bootstrap-fork --type=ptyHost --logsPath /data6/deepro/tmp/.vscode-server/data/logs/20240223T100713 + 56179 ? Sl 9:15 /data6/deepro/tmp/.vscode-server/bin/31c37ee8f63491495ac49e43b8544550fbae4533/node /data6/deepro/tmp/.vscode-server/bin/31c37ee8f63491495ac49e43b8544550fbae4533/out/bootstrap-fork --type=fileWatcher + 56195 ? I 0:00 [kworker/6:1-events] + 56255 pts/3 Ss+ 0:00 /usr/bin/bash --init-file /data6/deepro/tmp/.vscode-server/bin/31c37ee8f63491495ac49e43b8544550fbae4533/out/vs/workbench/contrib/terminal/browser/media/shellIntegration-bash.sh + 56275 pts/4 Ss+ 0:00 /usr/bin/bash --init-file /data6/deepro/tmp/.vscode-server/bin/31c37ee8f63491495ac49e43b8544550fbae4533/out/vs/workbench/contrib/terminal/browser/media/shellIntegration-bash.sh + 56475 ? Ss 0:00 sshd: dzb5732 [priv] + 56515 ? S 0:01 sshd: dzb5732@notty + 56516 ? Ss 0:00 /bin/sh + 56536 ? Sl 0:02 /afs/bx.psu.edu/user/d/dzb5732/.vscode-remote-containers/bin/31c37ee8f63491495ac49e43b8544550fbae4533/node /afs/bx.psu.edu/user/d/dzb5732/.vscode-remote-containers/dist/vscode-remote-containers-server-0.338.1.js + 64567 ? I 0:00 [kworker/102:2-events] + 64569 ? I 0:00 [kworker/81:1-mm_percpu_wq] + 64577 ? I 0:00 [kworker/104:2-events] + 64589 ? I 0:00 [kworker/14:1-events] + 64602 ? I 0:00 [kworker/79:2-events] + 64647 ? Sl 31:17 /data6/deepro/tmp/.vscode-server/bin/31c37ee8f63491495ac49e43b8544550fbae4533/node /data6/deepro/tmp/.vscode-server/extensions/ms-python.vscode-pylance-2024.2.2/dist/server.bundle.js --cancellationReceive=file:117d994ada03816ca0b2cd931f7953dfd0caa2e22f --node-ipc --clientProcessId=56157 + 64733 pts/5 Ss+ 0:00 /usr/bin/bash --init-file /data6/deepro/tmp/.vscode-server/bin/31c37ee8f63491495ac49e43b8544550fbae4533/out/vs/workbench/contrib/terminal/browser/media/shellIntegration-bash.sh + 65232 ? I 0:00 [kworker/19:2-events] + 65323 ? I 0:00 [kworker/97:1-events] + 65348 ? I 0:00 [kworker/8:0-events] + 65366 ? I 0:00 [kworker/106:0-events] + 65433 ? I 0:00 [kworker/109:1-events] + 65479 ? I 0:00 [kworker/41:2-events] + 65490 ? I< 0:08 [kworker/u229:3-xprtiod] + 65499 ? I 0:00 [kworker/86:2-mm_percpu_wq] + 65634 ? I 0:00 [kworker/7:0-events] + 65660 ? I 0:00 [kworker/14:0-events] + 65690 ? I 0:00 [kworker/15:2-events] + 65704 ? I 0:00 [kworker/19:0-mm_percpu_wq] + 65712 ? I 0:00 [kworker/89:0-events] + 65767 ? I 0:00 [kworker/41:1-events] + 65769 ? I 0:00 [kworker/51:2-events] + 65783 ? I 0:00 [kworker/42:2-events] + 65842 ? Sl 1:04 /data6/deepro/miniconda3/envs/dnanexus/bin/python -m ipykernel_launcher --f=/afs/bx.psu.edu/user/d/dzb5732/.local/share/jupyter/runtime/kernel-v2-56157echxRufKUmkG.json + 66010 ? I 0:00 [kworker/71:2-events] + 66058 ? I 0:00 [kworker/5:2-events] + 66194 ? I 0:00 [kworker/21:1-events] + 66468 ? I 0:00 [kworker/56:0-events] + 66491 ? I 0:00 [kworker/63:2-events] + 66497 ? I 0:00 [kworker/64:1-events] + 66524 ? I 0:00 [kworker/60:2-events] + 66530 ? I 0:00 [kworker/61:0-events] + 66546 ? I 0:00 [kworker/70:1-mm_percpu_wq] + 66554 ? I 0:00 [kworker/65:0-events] + 66564 ? I 0:00 [kworker/21:0-events] + 66582 ? I 0:00 [kworker/27:1-events] + 66591 ? I 0:00 [kworker/68:2-events] + 66595 ? I 0:00 [kworker/20:0-events] + 66608 ? I 0:00 [kworker/73:0-events] + 66613 ? I 0:00 [kworker/74:0-events] + 66638 ? I 0:00 [kworker/22:2-events] + 66644 ? I 0:00 [kworker/23:1-events] + 66661 ? I 0:00 [kworker/1:2-events] + 66667 ? I 0:00 [kworker/62:1-events] + 66672 ? I 0:00 [kworker/58:2-events] + 66676 ? I 0:00 [kworker/60:1-events] + 66680 ? S 0:00 pickup -l -t unix -u -c + 66691 ? Ss 0:00 sshd: rico [priv] + 66711 ? S 0:02 sshd: rico@pts/6 + 66712 pts/6 Ss 0:00 -bash + 66726 ? I 0:00 [kworker/65:2-events] + 66849 ? I 0:00 [kworker/27:2-events] + 66867 ? I 0:00 [kworker/66:0-events] + 67194 ? I 0:00 [kworker/59:2-events] + 67199 ? I 0:00 [kworker/68:1-events] + 67202 ? I 0:00 [kworker/67:1-events] + 67207 ? I 0:00 [kworker/70:2-events] + 67213 ? I 0:00 [kworker/71:1-mm_percpu_wq] + 67218 ? I 0:00 [kworker/72:1-events] + 67222 ? I 0:00 [kworker/76:0-events] + 67230 ? I 0:00 [kworker/78:1-events] + 67244 ? I 0:00 [kworker/82:0-events] + 67251 ? I 0:00 [kworker/74:2-events] + 67256 ? I 0:00 [kworker/75:2-mm_percpu_wq] + 67261 ? I 0:00 [kworker/67:2-events] + 67276 ? Ss 0:00 sshd: rico [priv] + 67289 ? S 0:02 sshd: rico@pts/7 + 67290 pts/7 Ss+ 0:00 -bash + 67306 ? I 0:00 [kworker/11:2-events] + 67788 ? I 0:00 [kworker/38:1-events] + 67904 ? I 0:00 [kworker/43:0-events] + 67912 ? I 0:00 [kworker/44:1-events] + 67921 ? I 0:00 [kworker/45:0-events] + 67930 ? I 0:00 [kworker/46:2-events] + 67932 ? I 0:00 [kworker/23:2-events] + 67946 ? I 0:00 [kworker/47:2-events] + 67949 ? I 0:00 [kworker/24:0-events] + 67955 ? I 0:00 [kworker/49:0-events] + 67957 ? I 0:00 [kworker/57:1-events] + 67966 ? I 0:00 [kworker/50:1-events] + 67971 ? I 0:00 [kworker/75:1-events] + 68008 ? I 0:00 [kworker/59:0-events] + 68461 ? I 0:00 [kworker/52:0-events] + 68482 ? I 0:01 [kworker/34:0-events] + 68483 ? I 0:00 [kworker/87:0-events] + 68489 ? I 0:00 [kworker/38:2-events] + 68490 ? I 0:00 [kworker/40:1-events] + 68600 ? I 0:00 [kworker/53:2-events] + 68613 ? I 0:00 [kworker/54:2-events] + 68628 ? I 0:00 [kworker/55:1-events] + 68640 ? I 0:00 [kworker/84:0-cgroup_destroy] + 68656 ? I 0:00 [kworker/85:1-events] + 68661 ? I 0:00 [kworker/80:0-events] + 68667 ? I 0:00 [kworker/3:0-events] + 68670 ? I 0:00 [kworker/88:0-events] + 68672 ? I 0:00 [kworker/77:0-events] + 68675 ? I 0:00 [kworker/89:1-events] + 68688 ? I 0:00 [kworker/90:2-events] + 68696 ? I 0:00 [kworker/8:2-events] + 68698 ? I 0:00 [kworker/91:1-events] + 68701 ? I 0:01 [kworker/0:0-events] + 68705 ? I 0:00 [kworker/93:0-events] + 68731 ? I 0:00 [kworker/94:1-events] + 68737 ? I 0:00 [kworker/15:1-events] + 68768 ? I 0:00 [kworker/96:2-events] + 68770 ? I 0:00 [kworker/3:1-events] + 68791 ? I 0:00 [kworker/9:2-events] + 68797 ? I 0:00 [kworker/100:1-events] + 68806 ? I 0:00 [kworker/101:0-events] + 68825 ? I 0:00 [kworker/103:1-events] + 68829 ? I 0:00 [kworker/13:2-events] + 68833 ? I 0:00 [kworker/104:0-events] + 68844 ? I 0:00 [kworker/105:1-mm_percpu_wq] + 68846 ? I 0:00 [kworker/63:0-events] + 68855 ? I 0:00 [kworker/106:2-events] + 68863 ? I 0:00 [kworker/4:0-events] + 68867 ? I 0:00 [kworker/12:0-events] + 68890 ? I 0:00 [kworker/107:2-events] + 68895 ? I 0:00 [kworker/16:0-events] + 68913 ? I 0:00 [kworker/109:0-events] + 68950 ? I 0:00 [kworker/18:0-events] + 69008 ? I 0:00 [kworker/110:0-events] + 69033 ? I 0:00 [kworker/22:1-events] + 69039 ? I 0:00 [kworker/13:1-events] + 69041 ? I 0:00 [kworker/29:2-rcu_gp] + 69056 ? I 0:00 [kworker/17:1-events] + 69108 ? I 0:00 [kworker/33:1-events] + 69146 ? I 0:00 [kworker/34:2] + 69152 ? I 0:00 [kworker/35:2-events] + 69154 ? I 0:00 [kworker/83:2-events] + 69157 ? I 0:00 [kworker/36:1-events] + 69238 ? I 0:00 [kworker/5:1-mm_percpu_wq] + 69312 ? I 0:00 [kworker/28:1-rcu_gp] + 69314 ? I 0:00 [kworker/25:2-events] + 69317 ? I 0:00 [kworker/29:1-events] + 69321 ? I 0:00 [kworker/57:0-events] + 69323 ? I 0:00 [kworker/30:1-events] + 69402 ? I 0:00 [kworker/1:1-events] + 69450 ? I 0:00 [kworker/58:1-events] + 69505 ? I 0:00 [kworker/56:2-events] + 69779 ? I 0:00 [kworker/35:1-events] + 69806 ? I 0:00 [kworker/10:2-events] + 69980 ? I 0:00 [kworker/31:2-events] + 70238 ? I 0:02 [kworker/0:2-events] + 70329 ? I 0:00 [kworker/92:0-events] + 70674 ? I 0:00 [kworker/110:2-rcu_gp] + 70725 ? I 0:00 [kworker/87:1-events] + 70828 ? I 0:00 [kworker/4:2-events] + 71141 ? I 0:00 [kworker/76:1-mm_percpu_wq] + 71328 ? I 0:00 [kworker/28:0-events] + 71330 ? I 0:00 [kworker/69:2-events] + 71340 ? I 0:00 [kworker/39:2-events] + 71453 ? I 0:00 [kworker/91:2-mm_percpu_wq] + 71461 ? I 0:00 [kworker/31:0-events] + 71634 ? I 0:00 [kworker/25:1-events] + 72294 ? I 0:00 [kworker/72:2-events] + 72380 ? I 0:00 [kworker/92:2-events] + 72400 ? I 0:00 [kworker/111:3-events] + 72401 ? I 0:00 [kworker/33:0-events] + 72404 ? I 0:00 [kworker/32:1-rcu_par_gp] + 72769 ? I 0:00 [kworker/95:2-rcu_gp] + 72771 ? I 0:00 [kworker/66:2-events] + 72789 ? I 0:01 [kworker/u225:24-events_unbound] + 72804 ? I< 0:00 [kworker/u228:4-xprtiod] + 72890 ? I 0:00 [kworker/96:1-events] + 72893 ? I 0:00 [kworker/37:2-events] + 72912 ? I 0:00 [kworker/48:2-events] + 72918 ? I 0:00 [kworker/52:1-rcu_gp] + 72924 ? I 0:00 [kworker/78:2-events] + 73018 ? I 0:00 [kworker/81:0-events] + 73659 ? I 0:00 [kworker/84:1-events] + 73812 ? I 0:00 [kworker/83:0-events] + 73818 ? I 0:00 [kworker/101:2-mm_percpu_wq] + 73840 ? I 0:00 [kworker/86:1-events] + 74133 ? I 0:00 [kworker/88:1] + 74285 ? I 0:00 [kworker/46:0-events] + 74286 ? I 0:00 [kworker/90:1-events] + 74305 ? I 0:00 [kworker/98:2-events] + 74307 ? I 0:00 [kworker/26:2-events] + 74308 ? I 0:00 [kworker/108:1-rcu_gp] + 74309 ? I 0:00 [kworker/108:3-events] + 74310 ? I 0:00 [kworker/93:1-events] + 74315 ? I 0:00 [kworker/111:1-rcu_gp] + 74321 ? I 0:00 [kworker/79:0-events] + 74417 ? I 0:00 [kworker/99:0-events] + 74422 ? I 0:00 [kworker/61:1-events] + 74430 ? I 0:00 [kworker/100:0-events] + 74435 ? I 0:00 [kworker/7:1-events] + 74547 ? I 0:00 [kworker/9:0-events] + 74549 ? I 0:00 [kworker/10:0-events] + 74869 ? I 0:00 [kworker/103:0-events] + 75139 ? I 0:00 [kworker/102:1-events] + 75141 ? I 0:00 [kworker/u226:1-flush-254:3] + 75142 ? I< 0:00 [kworker/u229:0-xprtiod] + 75244 ? I 0:00 [kworker/43:1-events] + 75249 ? I 0:00 [kworker/30:0-rcu_gp] + 75250 ? I 0:00 [kworker/32:2-rcu_par_gp] + 75256 ? I 0:00 [kworker/80:2-rcu_par_gp] + 75329 ? I 0:00 [kworker/105:2-events] + 75503 ? I< 0:00 [kworker/u228:1-xprtiod] + 75510 ? I 0:00 [kworker/37:1-events] + 75633 ? I 0:00 [kworker/42:0-events] + 75718 ? I 0:00 [kworker/95:1-events] + 75719 ? I 0:00 [kworker/36:2-events] + 75722 ? I 0:00 [kworker/97:0-events] + 75725 ? I 0:00 [kworker/98:1-rcu_gp] + 75804 ? I 0:00 [kworker/99:2-events] + 75820 ? I 0:00 [kworker/u225:1-events_unbound] + 75827 ? I 0:00 [kworker/48:0-events] + 75829 ? I 0:00 [kworker/12:1-events] + 75835 ? I 0:00 [kworker/49:1-events] + 75840 ? I 0:00 [kworker/17:2-mm_percpu_wq] + 75845 ? I 0:00 [kworker/18:1-events] + 75848 ? I 0:00 [kworker/50:0-events] + 75851 ? I 0:00 [kworker/20:1-events] + 75857 ? I 0:00 [kworker/26:0-events] + 75858 ? I 0:00 [kworker/u226:0-rpciod] + 75862 ? I 0:00 [kworker/24:2-events] + 75863 ? I 0:00 [kworker/u225:2-events_unbound] + 75865 ? I 0:00 [kworker/45:2-events] + 75868 ? I 0:00 [kworker/66:1-events] + 75874 ? I 0:00 [kworker/46:1-events] + 75893 ? I 0:00 [kworker/47:1-events] + 75894 pts/6 S+ 0:00 bash ./do-test.bash + 75896 pts/6 S+ 0:11 /scratch/rico/.venv/bin/python3 /scratch/rico/.venv/bin/planemo --verbose test --job_config_file=/scratch/rico/galaxytools/tools/ncbi_fcs_adaptor/planemo_job_conf.xml --no_cleanup --galaxy_root=/scratch/rico/galaxy + 75897 pts/6 S+ 0:00 tee test.log + 76003 ? I 0:00 [kworker/60:0-events] + 76006 ? I 0:00 [kworker/10:1-kdmflush] + 76009 ? I 0:00 [kworker/2:1-events] + 76104 ? Ss 0:00 /scratch/rico/.planemo/gx_venv_3/bin/python /scratch/rico/.planemo/gx_venv_3/bin/supervisord -c /tmp/tmpu7x63f_i/gravity/supervisor/supervisord.conf + 76105 ? S 0:14 /scratch/rico/.planemo/gx_venv_3/bin/python /scratch/rico/.planemo/gx_venv_3/bin/celery --app galaxy.celery worker --concurrency 2 --loglevel DEBUG --pool threads --queues celery,galaxy.internal,galaxy.external + 76106 ? S 0:11 /scratch/rico/.planemo/gx_venv_3/bin/python /scratch/rico/.planemo/gx_venv_3/bin/celery --app galaxy.celery beat --loglevel DEBUG --schedule /tmp/tmpu7x63f_i/gravity/celery-beat-schedule + 76107 ? S 0:17 /scratch/rico/.planemo/gx_venv_3/bin/python /scratch/rico/.planemo/gx_venv_3/bin/gunicorn galaxy.webapps.galaxy.fast_factory:factory() --timeout 300 --pythonpath lib -k galaxy.webapps.galaxy.workers.Worker -b localhost:39427 --workers=1 --config python:galaxy.web_stack.gunicorn_config --preload + 76309 ? S 0:00 /scratch/rico/.planemo/gx_venv_3/bin/python -c from multiprocessing.semaphore_tracker import main;main(7) + 76310 ? Sl 0:26 /scratch/rico/.planemo/gx_venv_3/bin/python /scratch/rico/.planemo/gx_venv_3/bin/gunicorn galaxy.webapps.galaxy.fast_factory:factory() --timeout 300 --pythonpath lib -k galaxy.webapps.galaxy.workers.Worker -b localhost:39427 --workers=1 --config python:galaxy.web_stack.gunicorn_config --preload + 76528 ? I 0:00 [kworker/106:1-events] + 76594 ? I 0:00 [kworker/37:0-events] + 76612 ? I 0:00 [kworker/84:2-cgroup_destroy] + 76614 ? S 0:00 sleep 180 + 76631 ? I 0:00 [kworker/5:0-events] + 76632 ? S 0:00 sleep 180 + 76703 ? I 0:00 [kworker/43:2-events] + 76725 ? I 0:00 [kworker/35:0-events] + 76744 ? I 0:00 [kworker/29:0] + 76749 ? I 0:00 [kworker/31:1-rcu_gp] + 76750 ? I 0:00 [kworker/32:0-events] + 77043 ? I 0:00 [kworker/101:1] + 77106 ? I 0:00 [kworker/u226:2-rpciod] + 77127 ? I 0:00 [kworker/18:2-events] + 77128 ? I< 0:00 [kworker/u229:1-xprtiod] + 77195 ? I 0:00 [kworker/49:2-events] + 77214 ? I 0:00 [kworker/28:2] + 77215 ? I 0:00 [kworker/44:0-events] + 77220 ? I 0:00 [kworker/33:2-events] + 77234 ? I 0:00 [kworker/u224:2] + 77317 ? I 0:00 [kworker/u225:0-events_unbound] + 77318 pts/6 R+ 0:00 ps ax +104034 ? Sl 17:26 /data6/deepro/miniconda3/envs/dnanexus/bin/python -m ipykernel_launcher --f=/afs/bx.psu.edu/user/d/dzb5732/.local/share/jupyter/runtime/kernel-v2-97629et4BqJf1SGy3.json +Shut down +supervisord has terminated +engine.test returning [<planemo.test.results.StructuredData object at 0x7f4411ea56a0>] +No file specified for test_output_markdown, skipping test output. +No file specified for test_output_text, skipping test output. +No file specified for test_output_xunit, skipping test output. +No file specified for test_output_junit, skipping test output. +No file specified for test_output_allure, skipping test output. +Killing pid file [/scratch/rico/galaxy/main.pid] +pid_file exists? [False] +All 2 test(s) executed passed. +ncbi_fcs_adaptor (Test #1): passed +ncbi_fcs_adaptor (Test #2): passed +Exiting planemo with exit code [0]