Mercurial > repos > richard-burhans > segalign

comparison lastz-cmd.ini @ 0:5c72425b7f1b draft

Find changesets by keywords (author, files, the commit message), revision number or hash, or revset expression.
planemo upload for repository https://github.com/richard-burhans/galaxytools/tree/main/tools/segalign commit 98a4dd44360447aa96d92143384d78e116d7581b
author richard-burhans
date Wed, 17 Apr 2024 18:06:54 +0000
parents
children
comparison
equal deleted inserted replaced
-1:000000000000 0:5c72425b7f1b
1 [arguments]
2 flag_args =
3 allgappedbounds
4 anyornone
5 gapped
6 gfextend
7 markend
8 nocensus
9 noentropy
10 nofilter
11 nogapped
12 nogfextend
13 nomirror
14 norecoverseeds
15 notransition
16 notrivial
17 notwins
18 noytrim
19 recoverseeds
20 self
21 version
22 yasra75
23 yasra85
24 yasra85short
25 yasra90
26 yasra95
27 yasra95short
28 yasra98
29
30 str_args =
31 action:query
32 action:target
33 ambiguous
34 ball
35 chores
36 filter
37 format
38 gap
39 hspthresh
40 include
41 match
42 maxwordcount
43 mismatch
44 nochain
45 output
46 outputmasking
47 outputmasking+
48 outputmasking+:soft
49 outputmasking:soft
50 querydepth
51 queryhsplimit
52 rdotplot
53 readgroup
54 scores
55 seed
56 segments
57 show
58 strand
59 targetcapsule
60 twins
61 writecapsule
62 writesegments
63
64 int_args =
65 allocate:query
66 allocate:target
67 allocate:traceback
68 exact
69 gappedthresh
70 inner
71 masking
72 queryhspbest
73 step
74 word
75 xdrop
76 ydrop
77
78 bool_str_args=
79 census
80 census16
81 census32
82 chain
83 entropy
84 help
85 infer
86 inferonly
87 infscores
88 tableonly
89
90 bool_int_args=
91 progress
92 progress+masking
93 transition
94