diff lastz-cmd.ini @ 0:5c72425b7f1b draft

planemo upload for repository https://github.com/richard-burhans/galaxytools/tree/main/tools/segalign commit 98a4dd44360447aa96d92143384d78e116d7581b

--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/lastz-cmd.ini	Wed Apr 17 18:06:54 2024 +0000
@@ -0,0 +1,94 @@
+[arguments]
+flag_args =
+  allgappedbounds
+  anyornone
+  gapped
+  gfextend
+  markend
+  nocensus
+  noentropy
+  nofilter
+  nogapped
+  nogfextend
+  nomirror
+  norecoverseeds
+  notransition
+  notrivial
+  notwins
+  noytrim
+  recoverseeds
+  self
+  version
+  yasra75
+  yasra85
+  yasra85short
+  yasra90
+  yasra95
+  yasra95short
+  yasra98
+
+str_args =
+  action:query
+  action:target
+  ambiguous
+  ball
+  chores
+  filter
+  format
+  gap
+  hspthresh
+  include
+  match
+  maxwordcount
+  mismatch
+  nochain
+  output
+  outputmasking
+  outputmasking+
+  outputmasking+:soft
+  outputmasking:soft
+  querydepth
+  queryhsplimit
+  rdotplot
+  readgroup
+  scores
+  seed
+  segments
+  show
+  strand
+  targetcapsule
+  twins
+  writecapsule
+  writesegments
+
+int_args =
+  allocate:query
+  allocate:target
+  allocate:traceback
+  exact
+  gappedthresh
+  inner
+  masking
+  queryhspbest
+  step
+  word
+  xdrop
+  ydrop
+
+bool_str_args=
+  census
+  census16
+  census32
+  chain
+  entropy
+  help
+  infer
+  inferonly
+  infscores
+  tableonly
+
+bool_int_args=
+  progress
+  progress+masking
+  transition
+