Mercurial > repos > richard-burhans > segalign
view lastz-cmd.ini @ 11:168b0a92edd3 draft
planemo upload for repository https://github.com/richard-burhans/galaxytools/tree/main/tools/segalign commit 53e28d4dd9ab352c94f91f952ac855b89197f032
| author | richard-burhans |
|---|---|
| date | Fri, 12 Jul 2024 23:00:03 +0000 |
| parents | 5c72425b7f1b |
| children |
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[arguments] flag_args = allgappedbounds anyornone gapped gfextend markend nocensus noentropy nofilter nogapped nogfextend nomirror norecoverseeds notransition notrivial notwins noytrim recoverseeds self version yasra75 yasra85 yasra85short yasra90 yasra95 yasra95short yasra98 str_args = action:query action:target ambiguous ball chores filter format gap hspthresh include match maxwordcount mismatch nochain output outputmasking outputmasking+ outputmasking+:soft outputmasking:soft querydepth queryhsplimit rdotplot readgroup scores seed segments show strand targetcapsule twins writecapsule writesegments int_args = allocate:query allocate:target allocate:traceback exact gappedthresh inner masking queryhspbest step word xdrop ydrop bool_str_args= census census16 census32 chain entropy help infer inferonly infscores tableonly bool_int_args= progress progress+masking transition