annotate blastXmlToPsl.xml @ 0:d5c3e461f484 draft

planemo upload for repository https://github.com/remimarenco/blastXmlToPsl commit 748d4887ce50f21d581c973686a4c2f9eaa29cad-dirty
author rmarenco
date Thu, 14 Jul 2016 17:45:34 -0400
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d5c3e461f484 planemo upload for repository https://github.com/remimarenco/blastXmlToPsl commit 748d4887ce50f21d581c973686a4c2f9eaa29cad-dirty
rmarenco
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1 <tool id="blastXmlToPsl" name="blastXmlToPsl" version="0.1.0">
d5c3e461f484 planemo upload for repository https://github.com/remimarenco/blastXmlToPsl commit 748d4887ce50f21d581c973686a4c2f9eaa29cad-dirty
rmarenco
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2 <requirements>
d5c3e461f484 planemo upload for repository https://github.com/remimarenco/blastXmlToPsl commit 748d4887ce50f21d581c973686a4c2f9eaa29cad-dirty
rmarenco
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3 <requirement type="package" version="1.0">blastXmlToPsl</requirement>
d5c3e461f484 planemo upload for repository https://github.com/remimarenco/blastXmlToPsl commit 748d4887ce50f21d581c973686a4c2f9eaa29cad-dirty
rmarenco
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4 </requirements>
d5c3e461f484 planemo upload for repository https://github.com/remimarenco/blastXmlToPsl commit 748d4887ce50f21d581c973686a4c2f9eaa29cad-dirty
rmarenco
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5 <stdio>
d5c3e461f484 planemo upload for repository https://github.com/remimarenco/blastXmlToPsl commit 748d4887ce50f21d581c973686a4c2f9eaa29cad-dirty
rmarenco
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6 <exit_code range="1:" />
d5c3e461f484 planemo upload for repository https://github.com/remimarenco/blastXmlToPsl commit 748d4887ce50f21d581c973686a4c2f9eaa29cad-dirty
rmarenco
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7 </stdio>
d5c3e461f484 planemo upload for repository https://github.com/remimarenco/blastXmlToPsl commit 748d4887ce50f21d581c973686a4c2f9eaa29cad-dirty
rmarenco
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8 <command><![CDATA[
d5c3e461f484 planemo upload for repository https://github.com/remimarenco/blastXmlToPsl commit 748d4887ce50f21d581c973686a4c2f9eaa29cad-dirty
rmarenco
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9 blastXmlToPsl -convertToNucCoords $input $output
d5c3e461f484 planemo upload for repository https://github.com/remimarenco/blastXmlToPsl commit 748d4887ce50f21d581c973686a4c2f9eaa29cad-dirty
rmarenco
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10 ]]></command>
d5c3e461f484 planemo upload for repository https://github.com/remimarenco/blastXmlToPsl commit 748d4887ce50f21d581c973686a4c2f9eaa29cad-dirty
rmarenco
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11 <inputs>
d5c3e461f484 planemo upload for repository https://github.com/remimarenco/blastXmlToPsl commit 748d4887ce50f21d581c973686a4c2f9eaa29cad-dirty
rmarenco
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12 <param type="data" name="input" format="xml" />
d5c3e461f484 planemo upload for repository https://github.com/remimarenco/blastXmlToPsl commit 748d4887ce50f21d581c973686a4c2f9eaa29cad-dirty
rmarenco
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13 </inputs>
d5c3e461f484 planemo upload for repository https://github.com/remimarenco/blastXmlToPsl commit 748d4887ce50f21d581c973686a4c2f9eaa29cad-dirty
rmarenco
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14 <outputs>
d5c3e461f484 planemo upload for repository https://github.com/remimarenco/blastXmlToPsl commit 748d4887ce50f21d581c973686a4c2f9eaa29cad-dirty
rmarenco
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15 <data format="psl" name="output" />
d5c3e461f484 planemo upload for repository https://github.com/remimarenco/blastXmlToPsl commit 748d4887ce50f21d581c973686a4c2f9eaa29cad-dirty
rmarenco
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16 </outputs>
d5c3e461f484 planemo upload for repository https://github.com/remimarenco/blastXmlToPsl commit 748d4887ce50f21d581c973686a4c2f9eaa29cad-dirty
rmarenco
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17 <help><![CDATA[
d5c3e461f484 planemo upload for repository https://github.com/remimarenco/blastXmlToPsl commit 748d4887ce50f21d581c973686a4c2f9eaa29cad-dirty
rmarenco
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18 blastXmlToPsl - convert blast XML output to PSLs
d5c3e461f484 planemo upload for repository https://github.com/remimarenco/blastXmlToPsl commit 748d4887ce50f21d581c973686a4c2f9eaa29cad-dirty
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19 ]]></help>
d5c3e461f484 planemo upload for repository https://github.com/remimarenco/blastXmlToPsl commit 748d4887ce50f21d581c973686a4c2f9eaa29cad-dirty
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20 </tool>