Mercurial > repos > rmarenco > regtools_junctions_extract
annotate tool_dependencies.xml @ 1:a3f5068aec02 draft default tip
planemo upload commit db634d933827ebc78981c7a0aa18205a85fa42e6
author | rmarenco |
---|---|
date | Fri, 22 Jul 2016 17:33:07 -0400 |
parents | 4c8a5b14a95f |
children |
rev | line source |
---|---|
0
4c8a5b14a95f
planemo upload commit ac72c5334c6412f92d771e8eeff38b9fa5c5947c-dirty
rmarenco
parents:
diff
changeset
|
1 <?xml version="1.0"?> |
4c8a5b14a95f
planemo upload commit ac72c5334c6412f92d771e8eeff38b9fa5c5947c-dirty
rmarenco
parents:
diff
changeset
|
2 <tool_dependency> |
4c8a5b14a95f
planemo upload commit ac72c5334c6412f92d771e8eeff38b9fa5c5947c-dirty
rmarenco
parents:
diff
changeset
|
3 <package name="regtools" version="0.3.0"> |
4c8a5b14a95f
planemo upload commit ac72c5334c6412f92d771e8eeff38b9fa5c5947c-dirty
rmarenco
parents:
diff
changeset
|
4 <install version="1.0"> |
4c8a5b14a95f
planemo upload commit ac72c5334c6412f92d771e8eeff38b9fa5c5947c-dirty
rmarenco
parents:
diff
changeset
|
5 <actions> |
4c8a5b14a95f
planemo upload commit ac72c5334c6412f92d771e8eeff38b9fa5c5947c-dirty
rmarenco
parents:
diff
changeset
|
6 <action type="shell_command">git clone --recursive https://github.com/griffithlab/regtools.git</action> |
4c8a5b14a95f
planemo upload commit ac72c5334c6412f92d771e8eeff38b9fa5c5947c-dirty
rmarenco
parents:
diff
changeset
|
7 <action type="make_directory">build</action> |
4c8a5b14a95f
planemo upload commit ac72c5334c6412f92d771e8eeff38b9fa5c5947c-dirty
rmarenco
parents:
diff
changeset
|
8 <action type="change_directory">build</action> |
4c8a5b14a95f
planemo upload commit ac72c5334c6412f92d771e8eeff38b9fa5c5947c-dirty
rmarenco
parents:
diff
changeset
|
9 |
4c8a5b14a95f
planemo upload commit ac72c5334c6412f92d771e8eeff38b9fa5c5947c-dirty
rmarenco
parents:
diff
changeset
|
10 <action type="set_environment_for_install"> |
4c8a5b14a95f
planemo upload commit ac72c5334c6412f92d771e8eeff38b9fa5c5947c-dirty
rmarenco
parents:
diff
changeset
|
11 <repository changeset_revision="1aea698a1c63" name="package_cmake_3_2_3" owner="iuc" prior_installation_required="True" toolshed="https://toolshed.g2.bx.psu.edu"> |
4c8a5b14a95f
planemo upload commit ac72c5334c6412f92d771e8eeff38b9fa5c5947c-dirty
rmarenco
parents:
diff
changeset
|
12 <package name="cmake" version="3.2.3" /> |
4c8a5b14a95f
planemo upload commit ac72c5334c6412f92d771e8eeff38b9fa5c5947c-dirty
rmarenco
parents:
diff
changeset
|
13 </repository> |
4c8a5b14a95f
planemo upload commit ac72c5334c6412f92d771e8eeff38b9fa5c5947c-dirty
rmarenco
parents:
diff
changeset
|
14 </action> |
4c8a5b14a95f
planemo upload commit ac72c5334c6412f92d771e8eeff38b9fa5c5947c-dirty
rmarenco
parents:
diff
changeset
|
15 <action type="shell_command">cmake ..</action> |
4c8a5b14a95f
planemo upload commit ac72c5334c6412f92d771e8eeff38b9fa5c5947c-dirty
rmarenco
parents:
diff
changeset
|
16 |
4c8a5b14a95f
planemo upload commit ac72c5334c6412f92d771e8eeff38b9fa5c5947c-dirty
rmarenco
parents:
diff
changeset
|
17 <action type="shell_command">make</action> |
4c8a5b14a95f
planemo upload commit ac72c5334c6412f92d771e8eeff38b9fa5c5947c-dirty
rmarenco
parents:
diff
changeset
|
18 <action type="move_file"> |
4c8a5b14a95f
planemo upload commit ac72c5334c6412f92d771e8eeff38b9fa5c5947c-dirty
rmarenco
parents:
diff
changeset
|
19 <source>regtools</source> |
4c8a5b14a95f
planemo upload commit ac72c5334c6412f92d771e8eeff38b9fa5c5947c-dirty
rmarenco
parents:
diff
changeset
|
20 <destination>$INSTALL_DIR</destination> |
4c8a5b14a95f
planemo upload commit ac72c5334c6412f92d771e8eeff38b9fa5c5947c-dirty
rmarenco
parents:
diff
changeset
|
21 </action> |
4c8a5b14a95f
planemo upload commit ac72c5334c6412f92d771e8eeff38b9fa5c5947c-dirty
rmarenco
parents:
diff
changeset
|
22 <action type="set_environment"> |
4c8a5b14a95f
planemo upload commit ac72c5334c6412f92d771e8eeff38b9fa5c5947c-dirty
rmarenco
parents:
diff
changeset
|
23 <environment_variable action="prepend_to" name="PATH">$INSTALL_DIR</environment_variable> |
4c8a5b14a95f
planemo upload commit ac72c5334c6412f92d771e8eeff38b9fa5c5947c-dirty
rmarenco
parents:
diff
changeset
|
24 </action> |
4c8a5b14a95f
planemo upload commit ac72c5334c6412f92d771e8eeff38b9fa5c5947c-dirty
rmarenco
parents:
diff
changeset
|
25 </actions> |
4c8a5b14a95f
planemo upload commit ac72c5334c6412f92d771e8eeff38b9fa5c5947c-dirty
rmarenco
parents:
diff
changeset
|
26 </install> |
4c8a5b14a95f
planemo upload commit ac72c5334c6412f92d771e8eeff38b9fa5c5947c-dirty
rmarenco
parents:
diff
changeset
|
27 </package> |
4c8a5b14a95f
planemo upload commit ac72c5334c6412f92d771e8eeff38b9fa5c5947c-dirty
rmarenco
parents:
diff
changeset
|
28 </tool_dependency> |