view tool_dependencies.xml @ 2:0f3d3f9f120f draft

planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/blockbuster commit 7a097197b6a5eda0ee430b36dd8e91bd3ce1db7b

<?xml version="1.0"?>
<tool_dependency>
    <!-- blockbuster seems to have no version number, assuming a really small one -->
    <!-- the version 0.0.1.1 fixes the memory leak in blockbuster, but is not yet (15.01.2016) upstream-->
    <package name="blockbuster" version="0.0.1.1">
        <install version="1.0">
            <actions>
                <action type="download_by_url">https://github.com/bgruening/download_store/raw/master/blockbuster/blockbuster-0.0.1.1.tar.gz</action>
                <action type="shell_command">make</action>
                <action type="move_file">
                    <source>blockbuster.x</source>
                    <destination>$INSTALL_DIR/bin</destination>
                </action>
                <action type="set_environment">
                    <environment_variable name="PATH" action="prepend_to">$INSTALL_DIR/bin</environment_variable>
                </action>
            </actions>
        </install>
        <readme>
        Blockbuster detects blocks of overlapping reads using a gaussian-distribution approach.
        GCC is needed to compile Blockbuster.
        http://hoffmann.bioinf.uni-leipzig.de/LIFE/blockbuster.html
        </readme>
    </package>
</tool_dependency>