Mercurial > repos > rnateam > blockbuster

changeset 2:0f3d3f9f120f draft

Find changesets by keywords (author, files, the commit message), revision number or hash, or revset expression.
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/blockbuster commit 7a097197b6a5eda0ee430b36dd8e91bd3ce1db7b
author rnateam
date Fri, 15 Jan 2016 07:52:56 -0500
parents 293c1420bcd7
children 7c7ff7a3503f
files blockbuster.tar.bz2 blockbuster.xml tool_dependencies.xml
diffstat 3 files changed, 6 insertions(+), 5 deletions(-) [+]
line wrap: on
line diff
Binary file blockbuster.tar.bz2 has changed
--- a/blockbuster.xml	Wed Oct 07 08:53:14 2015 -0400
+++ b/blockbuster.xml	Fri Jan 15 07:52:56 2016 -0500
@@ -1,7 +1,7 @@
-<tool id="blockbuster" name="blockbuster" version="0.1.1">
+<tool id="blockbuster" name="blockbuster" version="0.1.1.1">
     <description>detects blocks of overlapping reads using a gaussian-distribution approach</description>
     <requirements>
-        <requirement type="package" version="0.0.1">blockbuster</requirement>
+        <requirement type="package" version="0.0.1.1">blockbuster</requirement>
     </requirements>
     <command>
 <![CDATA[
--- a/tool_dependencies.xml	Wed Oct 07 08:53:14 2015 -0400
+++ b/tool_dependencies.xml	Fri Jan 15 07:52:56 2016 -0500
@@ -1,10 +1,11 @@
 <?xml version="1.0"?>
 <tool_dependency>
     <!-- blockbuster seems to have no version number, assuming a really small one -->
-    <package name="blockbuster" version="0.0.1">
+    <!-- the version 0.0.1.1 fixes the memory leak in blockbuster, but is not yet (15.01.2016) upstream-->
+    <package name="blockbuster" version="0.0.1.1">
         <install version="1.0">
             <actions>
-                <action type="download_by_url">https://github.com/bgruening/download_store/raw/master/blockbuster/blockbuster-0.0.1.tar.gz</action>
+                <action type="download_by_url">https://github.com/bgruening/download_store/raw/master/blockbuster/blockbuster-0.0.1.1.tar.gz</action>
                 <action type="shell_command">make</action>
                 <action type="move_file">
                     <source>blockbuster.x</source>
@@ -17,7 +18,7 @@
         </install>
         <readme>
         Blockbuster detects blocks of overlapping reads using a gaussian-distribution approach.
-        GCC is needed to compilte Blockbuster.
+        GCC is needed to compile Blockbuster.
         http://hoffmann.bioinf.uni-leipzig.de/LIFE/blockbuster.html
         </readme>
     </package>