Mercurial > repos > rnateam > cmsearch_deoverlap
annotate cmsearch-deoverlap.xml @ 0:54b16c794341 draft
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/rna_tools/cmsearch_deoverlap commit 675c458c910bb85bd472e25209fa1df43179efb6
author | rnateam |
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date | Sat, 19 Aug 2023 05:37:02 +0000 |
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children | 3fd3be28a04c |
rev | line source |
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54b16c794341
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/rna_tools/cmsearch_deoverlap commit 675c458c910bb85bd472e25209fa1df43179efb6
rnateam
parents:
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changeset
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1 <tool id="cmsearch_deoverlap" name="CMsearch deoverlap" version="0.08+galaxy0" profile="21.05"> |
54b16c794341
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/rna_tools/cmsearch_deoverlap commit 675c458c910bb85bd472e25209fa1df43179efb6
rnateam
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2 <description>removes lower scoring overlaps from cmsearch results</description> |
54b16c794341
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/rna_tools/cmsearch_deoverlap commit 675c458c910bb85bd472e25209fa1df43179efb6
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3 <requirements> |
54b16c794341
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/rna_tools/cmsearch_deoverlap commit 675c458c910bb85bd472e25209fa1df43179efb6
rnateam
parents:
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4 <requirement type="package" version="5.26">perl</requirement> |
54b16c794341
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/rna_tools/cmsearch_deoverlap commit 675c458c910bb85bd472e25209fa1df43179efb6
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parents:
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5 </requirements> |
54b16c794341
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/rna_tools/cmsearch_deoverlap commit 675c458c910bb85bd472e25209fa1df43179efb6
rnateam
parents:
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6 <command><![CDATA[ |
54b16c794341
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/rna_tools/cmsearch_deoverlap commit 675c458c910bb85bd472e25209fa1df43179efb6
rnateam
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7 ln -s '$clan_information' clan_info && |
54b16c794341
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/rna_tools/cmsearch_deoverlap commit 675c458c910bb85bd472e25209fa1df43179efb6
rnateam
parents:
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8 ln -s '$cmsearch_matches' cmsearch_matches && |
54b16c794341
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/rna_tools/cmsearch_deoverlap commit 675c458c910bb85bd472e25209fa1df43179efb6
rnateam
parents:
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9 LC_ALL=C perl '$__tool_directory__/cmsearch-deoverlap.pl' |
54b16c794341
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/rna_tools/cmsearch_deoverlap commit 675c458c910bb85bd472e25209fa1df43179efb6
rnateam
parents:
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10 --clanin clan_info cmsearch_matches |
54b16c794341
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/rna_tools/cmsearch_deoverlap commit 675c458c910bb85bd472e25209fa1df43179efb6
rnateam
parents:
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11 #if $maxkeep: |
54b16c794341
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/rna_tools/cmsearch_deoverlap commit 675c458c910bb85bd472e25209fa1df43179efb6
rnateam
parents:
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12 $maxkeep |
54b16c794341
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/rna_tools/cmsearch_deoverlap commit 675c458c910bb85bd472e25209fa1df43179efb6
rnateam
parents:
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13 #end if |
54b16c794341
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/rna_tools/cmsearch_deoverlap commit 675c458c910bb85bd472e25209fa1df43179efb6
rnateam
parents:
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14 #if $dirty: |
54b16c794341
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/rna_tools/cmsearch_deoverlap commit 675c458c910bb85bd472e25209fa1df43179efb6
rnateam
parents:
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15 $dirty && |
54b16c794341
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/rna_tools/cmsearch_deoverlap commit 675c458c910bb85bd472e25209fa1df43179efb6
rnateam
parents:
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16 mv *.sort '$matches_sort' |
54b16c794341
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/rna_tools/cmsearch_deoverlap commit 675c458c910bb85bd472e25209fa1df43179efb6
rnateam
parents:
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17 #end if |
54b16c794341
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/rna_tools/cmsearch_deoverlap commit 675c458c910bb85bd472e25209fa1df43179efb6
rnateam
parents:
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18 && |
54b16c794341
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/rna_tools/cmsearch_deoverlap commit 675c458c910bb85bd472e25209fa1df43179efb6
rnateam
parents:
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19 mv *.deoverlapped '$deoverlapped_matches' |
54b16c794341
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/rna_tools/cmsearch_deoverlap commit 675c458c910bb85bd472e25209fa1df43179efb6
rnateam
parents:
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20 |
54b16c794341
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/rna_tools/cmsearch_deoverlap commit 675c458c910bb85bd472e25209fa1df43179efb6
rnateam
parents:
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21 ]]></command> |
54b16c794341
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/rna_tools/cmsearch_deoverlap commit 675c458c910bb85bd472e25209fa1df43179efb6
rnateam
parents:
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22 <inputs> |
54b16c794341
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/rna_tools/cmsearch_deoverlap commit 675c458c910bb85bd472e25209fa1df43179efb6
rnateam
parents:
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23 <param name="clan_information" type="data" format="txt" label="Clan information" help="Each row in the file contains an RNA clan and its corresponding family members"/> |
54b16c794341
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/rna_tools/cmsearch_deoverlap commit 675c458c910bb85bd472e25209fa1df43179efb6
rnateam
parents:
diff
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24 <param name="cmsearch_matches" type="data" format="tabular" label="The tabular result file from cmsearch"/> |
54b16c794341
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/rna_tools/cmsearch_deoverlap commit 675c458c910bb85bd472e25209fa1df43179efb6
rnateam
parents:
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25 <param argument="--maxkeep" type="boolean" truevalue="--maxkeep" falsevalue="" label="Keep hits that only overlap with other hits that are not kept" help="If this option is not set, all hits with higher scoring overlap will be removed." /> |
54b16c794341
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/rna_tools/cmsearch_deoverlap commit 675c458c910bb85bd472e25209fa1df43179efb6
rnateam
parents:
diff
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26 <param argument="--dirty" type="boolean" truevalue="--dirty" falsevalue="" label="Keep the intermediate sorted tblout file"/> |
54b16c794341
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/rna_tools/cmsearch_deoverlap commit 675c458c910bb85bd472e25209fa1df43179efb6
rnateam
parents:
diff
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27 </inputs> |
54b16c794341
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/rna_tools/cmsearch_deoverlap commit 675c458c910bb85bd472e25209fa1df43179efb6
rnateam
parents:
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28 <outputs> |
54b16c794341
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/rna_tools/cmsearch_deoverlap commit 675c458c910bb85bd472e25209fa1df43179efb6
rnateam
parents:
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29 <data name="deoverlapped_matches" format="tabular" label="Deoverlapped matches" /> |
54b16c794341
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/rna_tools/cmsearch_deoverlap commit 675c458c910bb85bd472e25209fa1df43179efb6
rnateam
parents:
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30 <data name="matches_sort" format="tabular" label="Sorted matches"> |
54b16c794341
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/rna_tools/cmsearch_deoverlap commit 675c458c910bb85bd472e25209fa1df43179efb6
rnateam
parents:
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31 <filter>dirty</filter> |
54b16c794341
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/rna_tools/cmsearch_deoverlap commit 675c458c910bb85bd472e25209fa1df43179efb6
rnateam
parents:
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32 </data> |
54b16c794341
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/rna_tools/cmsearch_deoverlap commit 675c458c910bb85bd472e25209fa1df43179efb6
rnateam
parents:
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33 </outputs> |
54b16c794341
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/rna_tools/cmsearch_deoverlap commit 675c458c910bb85bd472e25209fa1df43179efb6
rnateam
parents:
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34 <tests> |
54b16c794341
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/rna_tools/cmsearch_deoverlap commit 675c458c910bb85bd472e25209fa1df43179efb6
rnateam
parents:
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35 <test expect_num_outputs="2"> |
54b16c794341
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/rna_tools/cmsearch_deoverlap commit 675c458c910bb85bd472e25209fa1df43179efb6
rnateam
parents:
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36 <param name="clan_information" value="ribo.claninfo" /> |
54b16c794341
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/rna_tools/cmsearch_deoverlap commit 675c458c910bb85bd472e25209fa1df43179efb6
rnateam
parents:
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37 <param name="cmsearch_matches" value="1.cmsearch.tblout" /> |
54b16c794341
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/rna_tools/cmsearch_deoverlap commit 675c458c910bb85bd472e25209fa1df43179efb6
rnateam
parents:
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38 <param name="dirty" value="--dirty"/> |
54b16c794341
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/rna_tools/cmsearch_deoverlap commit 675c458c910bb85bd472e25209fa1df43179efb6
rnateam
parents:
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39 <output name="deoverlapped_matches" file="1.cmsearch.tblout.deoverlapped" /> |
54b16c794341
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/rna_tools/cmsearch_deoverlap commit 675c458c910bb85bd472e25209fa1df43179efb6
rnateam
parents:
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40 <output name="matches_sort" file="1.cmsearch.tblout.sort" /> |
54b16c794341
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/rna_tools/cmsearch_deoverlap commit 675c458c910bb85bd472e25209fa1df43179efb6
rnateam
parents:
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41 </test> |
54b16c794341
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/rna_tools/cmsearch_deoverlap commit 675c458c910bb85bd472e25209fa1df43179efb6
rnateam
parents:
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42 <test expect_num_outputs="1"> |
54b16c794341
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/rna_tools/cmsearch_deoverlap commit 675c458c910bb85bd472e25209fa1df43179efb6
rnateam
parents:
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43 <param name="clan_information" value="ribo.claninfo" /> |
54b16c794341
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/rna_tools/cmsearch_deoverlap commit 675c458c910bb85bd472e25209fa1df43179efb6
rnateam
parents:
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44 <param name="cmsearch_matches" value="1.cmsearch.tblout" /> |
54b16c794341
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/rna_tools/cmsearch_deoverlap commit 675c458c910bb85bd472e25209fa1df43179efb6
rnateam
parents:
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45 <param name="dirty" value=""/> |
54b16c794341
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/rna_tools/cmsearch_deoverlap commit 675c458c910bb85bd472e25209fa1df43179efb6
rnateam
parents:
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46 <output name="deoverlapped_matches" file="1.cmsearch.tblout.deoverlapped" /> |
54b16c794341
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/rna_tools/cmsearch_deoverlap commit 675c458c910bb85bd472e25209fa1df43179efb6
rnateam
parents:
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47 </test> |
54b16c794341
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/rna_tools/cmsearch_deoverlap commit 675c458c910bb85bd472e25209fa1df43179efb6
rnateam
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48 </tests> |
54b16c794341
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/rna_tools/cmsearch_deoverlap commit 675c458c910bb85bd472e25209fa1df43179efb6
rnateam
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49 <help><![CDATA[ |
54b16c794341
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/rna_tools/cmsearch_deoverlap commit 675c458c910bb85bd472e25209fa1df43179efb6
rnateam
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50 |
54b16c794341
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/rna_tools/cmsearch_deoverlap commit 675c458c910bb85bd472e25209fa1df43179efb6
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51 .. class:: infomark |
54b16c794341
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/rna_tools/cmsearch_deoverlap commit 675c458c910bb85bd472e25209fa1df43179efb6
rnateam
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52 |
54b16c794341
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/rna_tools/cmsearch_deoverlap commit 675c458c910bb85bd472e25209fa1df43179efb6
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53 **What this tool does** |
54b16c794341
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/rna_tools/cmsearch_deoverlap commit 675c458c910bb85bd472e25209fa1df43179efb6
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54 |
54b16c794341
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/rna_tools/cmsearch_deoverlap commit 675c458c910bb85bd472e25209fa1df43179efb6
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55 This tool removes lower-scoring overlaps from cmsearch results. Given information about the clans and the cmsearch tbl output this tool returns a filtered cmsearch tbl output. |
54b16c794341
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/rna_tools/cmsearch_deoverlap commit 675c458c910bb85bd472e25209fa1df43179efb6
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56 |
54b16c794341
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/rna_tools/cmsearch_deoverlap commit 675c458c910bb85bd472e25209fa1df43179efb6
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57 **clan.info:** |
54b16c794341
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/rna_tools/cmsearch_deoverlap commit 675c458c910bb85bd472e25209fa1df43179efb6
rnateam
parents:
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58 |
54b16c794341
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/rna_tools/cmsearch_deoverlap commit 675c458c910bb85bd472e25209fa1df43179efb6
rnateam
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59 CL00111 SSU_rRNA_bacteria SSU_rRNA_archaea SSU_rRNA_eukarya SSU_rRNA_microsporidia SSU_trypano_mito |
54b16c794341
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/rna_tools/cmsearch_deoverlap commit 675c458c910bb85bd472e25209fa1df43179efb6
rnateam
parents:
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60 |
54b16c794341
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/rna_tools/cmsearch_deoverlap commit 675c458c910bb85bd472e25209fa1df43179efb6
rnateam
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61 CL00112 LSU_rRNA_archaea LSU_rRNA_bacteria LSU_rRNA_eukarya LSU_trypano_mito 5_8S_rRNA |
54b16c794341
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/rna_tools/cmsearch_deoverlap commit 675c458c910bb85bd472e25209fa1df43179efb6
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62 |
54b16c794341
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/rna_tools/cmsearch_deoverlap commit 675c458c910bb85bd472e25209fa1df43179efb6
rnateam
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63 CL99999 5S_rRNA mtPerm-5S |
54b16c794341
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/rna_tools/cmsearch_deoverlap commit 675c458c910bb85bd472e25209fa1df43179efb6
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64 |
54b16c794341
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/rna_tools/cmsearch_deoverlap commit 675c458c910bb85bd472e25209fa1df43179efb6
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65 **cmsearch.tblout:** |
54b16c794341
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/rna_tools/cmsearch_deoverlap commit 675c458c910bb85bd472e25209fa1df43179efb6
rnateam
parents:
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66 |
54b16c794341
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/rna_tools/cmsearch_deoverlap commit 675c458c910bb85bd472e25209fa1df43179efb6
rnateam
parents:
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67 contig--2249925 - SSU_rRNA_bacteria RF00177 hmm 19 914 2 898 + - 6 0.50 5.7 638.4 1.1e-189 ! - |
54b16c794341
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/rna_tools/cmsearch_deoverlap commit 675c458c910bb85bd472e25209fa1df43179efb6
rnateam
parents:
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68 |
54b16c794341
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/rna_tools/cmsearch_deoverlap commit 675c458c910bb85bd472e25209fa1df43179efb6
rnateam
parents:
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69 contig--2255364 - SSU_rRNA_bacteria RF00177 hmm 325 1084 765 1 - - 6 0.52 3.9 624.0 2.5e-185 ! - |
54b16c794341
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/rna_tools/cmsearch_deoverlap commit 675c458c910bb85bd472e25209fa1df43179efb6
rnateam
parents:
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70 |
54b16c794341
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/rna_tools/cmsearch_deoverlap commit 675c458c910bb85bd472e25209fa1df43179efb6
rnateam
parents:
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71 contig--2369838 - SSU_rRNA_bacteria RF00177 hmm 90 938 20 855 + - 6 0.52 7.0 609.3 6.6e-181 ! - |
54b16c794341
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/rna_tools/cmsearch_deoverlap commit 675c458c910bb85bd472e25209fa1df43179efb6
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72 |
54b16c794341
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/rna_tools/cmsearch_deoverlap commit 675c458c910bb85bd472e25209fa1df43179efb6
rnateam
parents:
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73 contig--2271497 - SSU_rRNA_bacteria RF00177 hmm 4 812 835 2 - - 6 0.51 5.0 597.5 2.5e-177 ! - |
54b16c794341
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/rna_tools/cmsearch_deoverlap commit 675c458c910bb85bd472e25209fa1df43179efb6
rnateam
parents:
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74 |
54b16c794341
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/rna_tools/cmsearch_deoverlap commit 675c458c910bb85bd472e25209fa1df43179efb6
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parents:
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75 contig--2369838 - SSU_rRNA_archaea RF01959 hmm 70 894 17 855 + - 6 0.52 5.4 346.7 9.9e-102 ! - |
54b16c794341
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/rna_tools/cmsearch_deoverlap commit 675c458c910bb85bd472e25209fa1df43179efb6
rnateam
parents:
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76 |
54b16c794341
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/rna_tools/cmsearch_deoverlap commit 675c458c910bb85bd472e25209fa1df43179efb6
rnateam
parents:
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77 **cmsearch.tblout.deoverlapped:** |
54b16c794341
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/rna_tools/cmsearch_deoverlap commit 675c458c910bb85bd472e25209fa1df43179efb6
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78 |
54b16c794341
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/rna_tools/cmsearch_deoverlap commit 675c458c910bb85bd472e25209fa1df43179efb6
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79 contig--2249925 - SSU_rRNA_bacteria RF00177 hmm 19 914 2 898 + - 6 0.50 5.7 638.4 1.1e-189 ! - |
54b16c794341
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/rna_tools/cmsearch_deoverlap commit 675c458c910bb85bd472e25209fa1df43179efb6
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80 |
54b16c794341
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/rna_tools/cmsearch_deoverlap commit 675c458c910bb85bd472e25209fa1df43179efb6
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81 contig--2255364 - SSU_rRNA_bacteria RF00177 hmm 325 1084 765 1 - - 6 0.52 3.9 624.0 2.5e-185 ! - |
54b16c794341
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/rna_tools/cmsearch_deoverlap commit 675c458c910bb85bd472e25209fa1df43179efb6
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82 |
54b16c794341
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/rna_tools/cmsearch_deoverlap commit 675c458c910bb85bd472e25209fa1df43179efb6
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83 contig--2271497 - SSU_rRNA_bacteria RF00177 hmm 4 812 835 2 - - 6 0.51 5.0 597.5 2.5e-177 ! - |
54b16c794341
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/rna_tools/cmsearch_deoverlap commit 675c458c910bb85bd472e25209fa1df43179efb6
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84 |
54b16c794341
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/rna_tools/cmsearch_deoverlap commit 675c458c910bb85bd472e25209fa1df43179efb6
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85 contig--2369838 - SSU_rRNA_bacteria RF00177 hmm 90 938 20 855 + - 6 0.52 7.0 609.3 6.6e-181 ! - |
54b16c794341
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/rna_tools/cmsearch_deoverlap commit 675c458c910bb85bd472e25209fa1df43179efb6
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86 |
54b16c794341
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/rna_tools/cmsearch_deoverlap commit 675c458c910bb85bd472e25209fa1df43179efb6
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87 |
54b16c794341
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/rna_tools/cmsearch_deoverlap commit 675c458c910bb85bd472e25209fa1df43179efb6
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88 ]]></help> |
54b16c794341
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/rna_tools/cmsearch_deoverlap commit 675c458c910bb85bd472e25209fa1df43179efb6
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89 <citations> |
54b16c794341
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/rna_tools/cmsearch_deoverlap commit 675c458c910bb85bd472e25209fa1df43179efb6
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90 <citation type="bibtex"> |
54b16c794341
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/rna_tools/cmsearch_deoverlap commit 675c458c910bb85bd472e25209fa1df43179efb6
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91 @software{nawrocki_nawrockiecmsearch_tblout_deoverlap_2019, |
54b16c794341
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/rna_tools/cmsearch_deoverlap commit 675c458c910bb85bd472e25209fa1df43179efb6
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92 title = {nawrockie/cmsearch\_tblout\_deoverlap}, |
54b16c794341
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/rna_tools/cmsearch_deoverlap commit 675c458c910bb85bd472e25209fa1df43179efb6
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93 url = {https://github.com/nawrockie/cmsearch_tblout_deoverlap}, |
54b16c794341
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/rna_tools/cmsearch_deoverlap commit 675c458c910bb85bd472e25209fa1df43179efb6
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94 abstract = {Script that removes lower scoring overlaps from cmsearch v1.1x --tblout files.}, |
54b16c794341
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/rna_tools/cmsearch_deoverlap commit 675c458c910bb85bd472e25209fa1df43179efb6
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95 author = {Nawrocki, Eric}, |
54b16c794341
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/rna_tools/cmsearch_deoverlap commit 675c458c910bb85bd472e25209fa1df43179efb6
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96 year = {2019}} |
54b16c794341
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/rna_tools/cmsearch_deoverlap commit 675c458c910bb85bd472e25209fa1df43179efb6
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97 </citation> |
54b16c794341
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/rna_tools/cmsearch_deoverlap commit 675c458c910bb85bd472e25209fa1df43179efb6
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98 </citations> |
54b16c794341
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/rna_tools/cmsearch_deoverlap commit 675c458c910bb85bd472e25209fa1df43179efb6
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99 </tool> |