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planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_sortmerna_database_downloader commit 4241c1d4b05a177bd2c74f5a139f51d4f65e0b55
author rnateam
date Tue, 13 Jun 2017 12:03:08 -0400
parents 30bb49887172
children
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<?xml version="1.0"?>
<data_managers>
    <data_manager tool_file="data_manager/data_manager_sortmerna_download.xml" id="data_manager_sortmerna_download" >
        <data_table name="rRNA_databases">  <!-- Defines a Data Table to be modified. -->
            <output> <!-- Handle the output of the Data Manager Tool -->
                <column name="value" />  <!-- columns that are going to be specified by the Data Manager Tool -->
                <column name="name" />  <!-- columns that are going to be specified by the Data Manager Tool -->
                <column name="path" output_ref="out_file" >
                    <move type="directory">
                        <source>${path}</source>
                        <target base="${GALAXY_DATA_MANAGER_DATA_PATH}">rRNA_databases/${name}</target>
                    </move>
                    <value_translation>${GALAXY_DATA_MANAGER_DATA_PATH}/rRNA_databases/${name}/${name}.fasta</value_translation>
                    <value_translation type="function">abspath</value_translation>
                </column>
            </output>
        </data_table>
    </data_manager>
</data_managers>