Mercurial > repos > rnateam > graphclust_align_cluster
changeset 2:40371e8b6ee2 draft default tip
"planemo upload for repository https://github.com/bgruening/galaxytools/tools/GraphClust/AlignCluster commit 6f9cc1c762abc9a45af9c459bd2603426148a369-dirty"
| author | rnateam |
|---|---|
| date | Sun, 12 Sep 2021 20:11:46 +0000 |
| parents | 953353eacec2 |
| children | |
| files | align_cluster.xml |
| diffstat | 1 files changed, 2 insertions(+), 2 deletions(-) [+] |
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--- a/align_cluster.xml Sun Oct 28 18:52:14 2018 -0400 +++ b/align_cluster.xml Sun Sep 12 20:11:46 2021 +0000 @@ -102,12 +102,12 @@ <when value="yes" > <param format="fasta" name="transcript_loci_fasta" type="data" label="Loci reference sequence" help="Sequence of reference species (human) for the genomic loci (precursor mRNA/lncRNA) to locate the clusters" /> - <param name='transcript_loci_bed' type="text" value="chr1 0 100000 gene 0 +" + <param name='transcript_loci_bed' type="txt" value="chr1 0 100000 gene 0 +" help="bed entry string of the reference transcript loci for bed/ucsc-track output. 'chrom start end name score strand' white-space separated."> <validator type="regex" message="one-line bed string must have at least 6 entries as BED6 format (chrom start end name 0 strand) (space and tab allowed)">^\S+\s+[0-9]+\s+[0-9]+\s+\S+\s+\S+\s+[-+]\s*$</validator> </param> - <param name='genome_version' value="hg38" type="text" label="reference genome assembly" + <param name='genome_version' value="hg38" type="txt" label="reference genome assembly" help="ucsc reference genome assembly version used in the input MAF alignments (e.g. hg38, hg19, mm10). To identify the reference in clusters"> <validator type="regex" message="ucsc genome assembly version has an alphabet prefix and a number suffix">^[a-zA-Z]+[0-9]+$</validator> </param>