Mercurial > repos > rnateam > mafft
comparison test-data/mafft_default.aln @ 15:bf28a8cff401 draft
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/mafft commit 2f6456c314c010fd73f5eeaf809a9afce47353af
author | bgruening |
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date | Wed, 20 Mar 2024 07:34:52 +0000 |
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14:6f28e90db932 | 15:bf28a8cff401 |
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1 > 1== M63632 1 Lampetra japonica rhodopsin <>[BBRC174,1125-1132'91] | |
2 ----------------------------------------MNG----------------T | |
3 E--G--DNFYVP----FSNKTGLARSPYEYPQY-------YLAEPWK---------YSAL | |
4 AAYMFFLILVGFPVNFLTLFVTVQHKKLRTPLNYILLNLAMANLFMVLFG-FTVTMYTSM | |
5 N-GYFV--FGPTMCSIEGFFATLGGEVALWSLVVLAIERYIVICKPMGN-FRFGNTHAIM | |
6 GVAFTWIMALAC-AAPPLVG-W-----SRYIPEGMQCSCGPDYYTLNPNFNNESYVVYMF | |
7 VVHFLVPFVIIFFCYGRLLCTV----KEAAAAQQ-------------------------- | |
8 ------------------------------------------------------------ | |
9 ------------------------------------------------------------ | |
10 -------------ESASTQK------AEKEVTRMVVLMVIGFLVCWVPYASVAFYIFT-H | |
11 QGS--DFGATFMTLPAFFAKSSALYNPVIYILMNKQFRNCMITTLCC--------GKNPL | |
12 GDDE--SGASTSKTEVSSVS-TSPVSPA-------------------------------- | |
13 --------------------------------------------------------- | |
14 > 2== U22180 1 rat opsin <rod>[J.Mol.Neurosci.5(3),207-209'94] | |
15 ----------------------------------------MNG----------------T | |
16 E--G--PNFYVP----FSNITGVVRSPFEQPQY-------YLAEPWQ---------FSML | |
17 AAYMFLLIVLGFPINFLTLYVTVQHKKLRTPLNYILLNLAVADLFMVFGG-FTTTLYTSL | |
18 H-GYFV--FGPTGCNLEGFFATLGGEIGLWSLVVLAIERYVVVCKPMSN-FRFGENHAIM | |
19 GVAFTWVMALAC-AAPPLVG-W-----SRYIPEGMQCSCGIDYYTLKPEVNNESFVIYMF | |
20 VVHFTIPMIVIFFCYGQLVFTV----KEAAAQQQ-------------------------- | |
21 ------------------------------------------------------------ | |
22 ------------------------------------------------------------ | |
23 -------------ESATTQK------AEKEVTRMVIIMVIFFLICWLPYASVAMYIFT-H | |
24 QGS--NFGPIFMTLPAFFAKTASIYNPIIYIMMNKQFRNCMLTSLCC--------GKNPL | |
25 GDDE--ASATASKTE------TSQVAPA-------------------------------- | |
26 --------------------------------------------------------- | |
27 > 3== M92038 1 chicken green sensitive cone opsin <retina>[PNAS89,5932-5936'9 | |
28 ----------------------------------------MNG----------------T | |
29 E--G--INFYVP----MSNKTGVVRSPFEYPQY-------YLAEPWK---------YRLV | |
30 CCYIFFLISTGLPINLLTLLVTFKHKKLRQPLNYILVNLAVADLFMACFG-FTVTFYTAW | |
31 N-GYFV--FGPVGCAVEGFFATLGGQVALWSLVVLAIERYIVVCKPMGN-FRFSATHAMM | |
32 GIAFTWVMAFSC-AAPPLFG-W-----SRYMPEGMQCSCGPDYYTHNPDYHNESYVLYMF | |
33 VIHFIIPVVVIFFSYGRLICKV----REAAAQQQ-------------------------- | |
34 ------------------------------------------------------------ | |
35 ------------------------------------------------------------ | |
36 -------------ESATTQK------AEKEVTRMVILMVLGFMLAWTPYAVVAFWIFT-N | |
37 KGA--DFTATLMAVPAFFSKSSSLYNPIIYVLMNKQFRNCMITTICC--------GKNPF | |
38 GDEDVSSTVSQSKTEVSSVS-SSQVSPA-------------------------------- | |
39 --------------------------------------------------------- | |
40 > 4=p A45229 opsin, green-sensitive (clone GFgr-1) - goldfish | |
41 ----------------------------------------MNG----------------T | |
42 E--G--KNFYVP----MSNRTGLVRSPFEYPQY-------YLAEPWQ---------FKIL | |
43 ALYLFFLMSMGLPINGLTLVVTAQHKKLRQPLNFILVNLAVAGTIMVCFG-FTVTFYTAI | |
44 N-GYFV--LGPTGCAVEGFMATLGGEVALWSLVVLAIERYIVVCKPMGS-FKFSSSHAFA | |
45 GIAFTWVMALAC-AAPPLFG-W-----SRYIPEGMQCSCGPDYYTLNPDYNNESYVIYMF | |
46 VCHFILPVAVIFFTYGRLVCTV----KAAAAQQQ-------------------------- | |
47 ------------------------------------------------------------ | |
48 ------------------------------------------------------------ | |
49 -------------DSASTQK------AEREVTKMVILMVFGFLIAWTPYATVAAWIFF-N | |
50 KGA--DFSAKFMAIPAFFSKSSALYNPVIYVLLNKQFRNCMLTTIFC--------GKNPL | |
51 GDDE-SSTVSTSKTEVSS------VSPA-------------------------------- | |
52 --------------------------------------------------------- | |
53 > 5=p B45229 opsin, green-sensitive (clone GFgr-2) - goldfish | |
54 ----------------------------------------MNG----------------T | |
55 E--G--NNFYVP----LSNRTGLVRSPFEYPQY-------YLAEPWQ---------FKLL | |
56 AVYMFFLICLGLPINGLTLICTAQHKKLRQPLNFILVNLAVAGAIMVCFG-FTVTFYTAI | |
57 N-GYFA--LGPTGCAVEGFMATLGGEVALWSLVVLAIERYIVVCKPMGS-FKFSSTHASA | |
58 GIAFTWVMAMAC-AAPPLVG-W-----SRYIPEGIQCSCGPDYYTLNPEYNNESYVLYMF | |
59 ICHFILPVTIIFFTYGRLVCTV----KAAAAQQQ-------------------------- | |
60 ------------------------------------------------------------ | |
61 ------------------------------------------------------------ | |
62 -------------DSASTQK------AEREVTKMVILMVLGFLVAWTPYATVAAWIFF-N | |
63 KGA--AFSAQFMAIPAFFSKTSALYNPVIYVLLNKQFRSCMLTTLFC--------GKNPL | |
64 GDEE-SSTVSTSKTEVSS------VSPA-------------------------------- | |
65 --------------------------------------------------------- | |
66 > 6== L11864 1 Carassius auratus blue cone opsin <retina>[Biochemistry32,208- | |
67 ----------------------------------------MKQ----------------V | |
68 PEFH--EDFYIPIPLDINNLS--AYSPFLVPQD-------HLGNQGI---------FMAM | |
69 SVFMFFIFIGGASINILTILCTIQFKKLRSHLNYILVNLSIANLFVAIFG-SPLSFYSFF | |
70 N-RYFI--FGATACKIEGFLATLGGMVGLWSLAVVAFERWLVICKPLGN-FTFKTPHAIA | |
71 GCILPWISALAA-SLPPLFG-W-----SRYIPEGLQCSCGPDWYTTNNKYNNESYVMFLF | |
72 CFCFAVPFGTIVFCYGQLLITL----KLAAKAQA-------------------------- | |
73 ------------------------------------------------------------ | |
74 ------------------------------------------------------------ | |
75 -------------DSASTQK------AEREVTKMVVVMVLGFLVCWAPYASFSLWIVS-H | |
76 RGE--EFDLRMATIPSCLSKASTVYNPVIYVLMNKQFRSCMM-KMVC--------GKN-I | |
77 EEDE--ASTSSQVTQVSS------VAPEK------------------------------- | |
78 --------------------------------------------------------- | |
79 > 7== M13299 1 human BCP <>[Science232(4747),193-202'86] | |
80 ----------------------------------------MRK----------------M | |
81 S--E--EEFYL-----FKNIS--SVGPWDGPQY-------HIAPVWA---------FYLQ | |
82 AAFMGTVFLIGFPLNAMVLVATLRYKKLRQPLNYILVNVSFGGFLLCIFS-VFPVFVASC | |
83 N-GYFV--FGRHVCALEGFLGTVAGLVTGWSLAFLAFERYIVICKPFGN-FRFSSKHALT | |
84 VVLATWTIGIGV-SIPPFFG-W-----SRFIPEGLQCSCGPDWYTVGTKYRSESYTWFLF | |
85 IFCFIVPLSLICFSYTQLLRAL----KAVAAQQQ-------------------------- | |
86 ------------------------------------------------------------ | |
87 ------------------------------------------------------------ | |
88 -------------ESATTQK------AEREVSRMVVVMVGSFCVCYVPYAAFAMYMVN-N | |
89 RNH--GLDLRLVTIPSFFSKSACIYNPIIYCFMNKQFQACIM-KMVC--------GKA-M | |
90 TDES--DTCSSQKTEVSTVS-STQVGPN-------------------------------- | |
91 --------------------------------------------------------- | |
92 > 8=opsin, greensensitive human (fragment) S07060 | |
93 ------------------------------------------------------------ | |
94 ------------------------------------------------------------ | |
95 ------------------------------------------DLAETVIA-STISIVNQV | |
96 S-GYFV--LGHPMCVLEGYTVSLCGITGLWSLAIISWERWLVVCKPFGN-VRFDAKLAIV | |
97 GIAFSWIWAAVW-TAPPIFG-W-----SRYWPHGLKTSCGPDVFSGSSYPGVQSYMIVLM | |
98 VTCCITPLSIIVLCYLQVWLAI----RAVAKQQK-------------------------- | |
99 ------------------------------------------------------------ | |
100 ------------------------------------------------------------ | |
101 -------------ESESTQK------AEKEVTRMVVVMVLAFC----------------- | |
102 ------------------------------------------------------------ | |
103 ------------------------------------------------------------ | |
104 --------------------------------------------------------- | |
105 > 9== K03494 1 human GCP <>[Science232(4747),193-202'86] | |
106 ----------------------------------------MAQQWSLQRLAGRHPQDSYE | |
107 DSTQ--SSIFT-----YTNSNS-TRGPFEGPNY-------HIAPRWV---------YHLT | |
108 SVWMIFVVIASVFTNGLVLAATMKFKKLRHPLNWILVNLAVADLAETVIA-STISVVNQV | |
109 Y-GYFV--LGHPMCVLEGYTVSLCGITGLWSLAIISWERWMVVCKPFGN-VRFDAKLAIV | |
110 GIAFSWIWAAVW-TAPPIFG-W-----SRYWPHGLKTSCGPDVFSGSSYPGVQSYMIVLM | |
111 VTCCITPLSIIVLCYLQVWLAI----RAVAKQQK-------------------------- | |
112 ------------------------------------------------------------ | |
113 ------------------------------------------------------------ | |
114 -------------ESESTQK------AEKEVTRMVVVMVLAFCFCWGPYAFFACFAAA-N | |
115 PGY--PFHPLMAALPAFFAKSATIYNPVIYVFMNRQFRNCIL-QLF---------GKK-V | |
116 DDGS--ELSSASKTEVSSV---SSVSPA-------------------------------- | |
117 --------------------------------------------------------- | |
118 > 10== Z68193 1 human Red Opsin <>[] | |
119 ----------------------------------------MAQQWSLQRLAGRHPQDSYE | |
120 DSTQ--SSIFT-----YTNSNS-TRGPFEGPNY-------HIAPRWV---------YHLT | |
121 SVWMIFVVTASVFTNGLVLAATMKFKKLRHPLNWILVNLAVADLAETVIA-STISIVNQV | |
122 S-GYFV--LGHPMCVLEGYTVSLCGITGLWSLAIISWERWLVVCKPFGN-VRFDAKLAIV | |
123 GIAFSWIWSAVW-TAPPIFG-W-----SRYWPHGLKTSCGPDVFSGSSYPGVQSYMIVLM | |
124 VTCCIIPLAIIMLCYLQVWLAI----RAVAKQQK-------------------------- | |
125 ------------------------------------------------------------ | |
126 ------------------------------------------------------------ | |
127 -------------ESESTQK------AEKEVTRMVVVMIFAYCVCWGPYTFFACFAAA-N | |
128 PGY--AFHPLMAALPAYFAKSATIYNPVIYVFMNRQFRNCIL-QLF---------GKK-V | |
129 DDGS--ELSSASKTEVSSV---SSVSPA-------------------------------- | |
130 --------------------------------------------------------- | |
131 > 11== M92036 1 Gecko gecko P521 <retina>[PNAS89,6841-6845'92] | |
132 ----------------------------------------MTEAWNVAVFAARRSRDD-D | |
133 DTTR--GSVFT-----YTNTNN-TRGPFEGPNY-------HIAPRWV---------YNLV | |
134 SFFMIIVVIASCFTNGLVLVATAKFKKLRHPLNWILVNLAFVDLVETLVA-STISVFNQI | |
135 F-GYFI--LGHPLCVIEGYVVSSCGITGLWSLAIISWERWFVVCKPFGN-IKFDSKLAII | |
136 GIVFSWVWAWGW-SAPPIFG-W-----SRYWPHGLKTSCGPDVFSGSVELGCQSFMLTLM | |
137 ITCCFLPLFIIIVCYLQVWMAI----RAVAAQQK-------------------------- | |
138 ------------------------------------------------------------ | |
139 ------------------------------------------------------------ | |
140 -------------ESESTQK------AEREVSRMVVVMIVAFCICWGPYASFVSFAAA-N | |
141 PGY--AFHPLAAALPAYFAKSATIYNPVIYVFMNRQFRNCIM-QLF---------GKK-V | |
142 DDGS--EASTTSRTEVSSVS-NSSVAPA-------------------------------- | |
143 --------------------------------------------------------- | |
144 > 12== M62903 1 chicken visual pigment <>[BBRC173,1212-1217'90] | |
145 ----------------------------------------MAA-WEAAFAARRRHEE--E | |
146 DTTR--DSVFT-----YTNSNN-TRGPFEGPNY-------HIAPRWV---------YNLT | |
147 SVWMIFVVAASVFTNGLVLVATWKFKKLRHPLNWILVNLAVADLGETVIA-STISVINQI | |
148 S-GYFI--LGHPMCVVEGYTVSACGITALWSLAIISWERWFVVCKPFGN-IKFDGKLAVA | |
149 GILFSWLWSCAW-TAPPIFG-W-----SRYWPHGLKTSCGPDVFSGSSDPGVQSYMVVLM | |
150 VTCCFFPLAIIILCYLQVWLAI----RAVAAQQK-------------------------- | |
151 ------------------------------------------------------------ | |
152 ------------------------------------------------------------ | |
153 -------------ESESTQK------AEKEVSRMVVVMIVAYCFCWGPYTFFACFAAA-N | |
154 PGY--AFHPLAAALPAYFAKSATIYNPIIYVFMNRQFRNCIL-QLF---------GKK-V | |
155 DDGS--EVST-SRTEVSSVS-NSSVSPA-------------------------------- | |
156 --------------------------------------------------------- | |
157 > 13== S75720 1 chicken P-opsin <>[Science267(5203),1502-1506'95] | |
158 ----------------------------------------MS-----------------S | |
159 NSSQ--AP-----------PNG-TPGPFDGPQW------PYQAPQST---------YVGV | |
160 AVLMGTVVACASVVNGLVIVVSICYKKLRSPLNYILVNLAVADLLVTLCG-SSVSLSNNI | |
161 N-GFFV--FGRRMCELEGFMVSLTGIVGLWSLAILALERYVVVCKPLGD-FQFQRRHAVS | |
162 GCAFTWGWALLW-SAPPLLG-W-----SSYVPEGLRTSCGPNWYTGGSNN--NSYILSLF | |
163 VTCFVLPLSLILFSYTNLLLTL----RAAAAQQK-------------------------- | |
164 ------------------------------------------------------------ | |
165 ------------------------------------------------------------ | |
166 -------------EADTTQR------AEREVTRMVIVMVMAFLLCWLPYSTFALVVAT-H | |
167 KGI--IIQPVLASLPSYFSKTATVYNPIIYVFMNKQFQSCLL-EMLCCGY----QPQR-T | |
168 GKAS--PGTPGPHADVTAAGLRNKVMPAHPV----------------------------- | |
169 --------------------------------------------------------- | |
170 > 14== M17718 1 D.melanogaster Rh3 <>[J.Neurosci.7,1550-1557'87] | |
171 ----------MESGNVSS------------SLFGNVST-ALRP----------------E | |
172 ARLS--A----------ETRLLGWNVPPEELR--------HIPEHWLTYPEPPESMNYLL | |
173 GTLYIFFTLMSMLGNGLVIWVFSAAKSLRTPSNILVINLAFCDFMMMVK--TPIFIYNSF | |
174 H-QGYA--LGHLGCQIFGIIGSYTGIAAGATNAFIAYDRFNVITRPMEG--KMTHGKAIA | |
175 MIIFIYMYATPW-VVACYTETW-----GRFVPEGYLTSCTFDYLT--DNFDTRLFVACIF | |
176 FFSFVCPTTMITYYYSQIVGHVFSHEKALRDQAKK------------------------- | |
177 --------------------------------------------------MN-------- | |
178 --VESL------------------------------------------------------ | |
179 ----------RSNVDKNKET------AEIRIAKAAITICFLFFCSWTPYGVMSLIGAF-G | |
180 DKT--LLTPGATMIPACACKMVACIDPFVYAISHPRYRMELQKRCPWLAL---------N | |
181 EKAP--ESSAVASTSTTQEP--QQTTAA-------------------------------- | |
182 --------------------------------------------------------- | |
183 > 15== X65879 1 Drosophila pseudoobscura Dpse\Rh3 <>[Genetics132(1),193-204'92 | |
184 ----------MEYHNVSS------------VL-GNVSS-VLRP----------------D | |
185 ARLS--A----------ESRLLGWNVPPDELR--------HIPEHWLIYPEPPESMNYLL | |
186 GTLYIFFTVISMIGNGLVMWVFSAAKSLRTPSNILVINLAFCDFMMMIK--TPIFIYNSF | |
187 H-QGYA--LGHLGCQIFGVIGSYTGIAAGATNAFIAYDRYNVITRPMEG--KMTHGKAIA | |
188 MIIFIYLYATPW-VVACYTESW-----GRFVPEGYLTSCTFDYLT--DNFDTRLFVACIF | |
189 FFSFVCPTTMITYYYSQIVGHVFSHEKALRDQAKK------------------------- | |
190 --------------------------------------------------MN-------- | |
191 --VDSL------------------------------------------------------ | |
192 ----------RSNVDKSKEA------AEIRIAKAAITICFLFFASWTPYGVMSLIGAF-G | |
193 DKT--LLTPGATMIPACTCKMVACIDPFVYAISHPRYRMELQKRCPWLAI---------S | |
194 EKAP--ESRAAISTSTTQEQ--QQTTAA-------------------------------- | |
195 --------------------------------------------------------- | |
196 > 16== M17730 1 D.melanogaster Rh4 opsin <>[J.Neurosci.7,1558-1566'87] | |
197 ----------ME------------------PL-CNASEPPLRP----------------E | |
198 AR-S--SG---N----GDLQFLGWNVPPDQIQ--------YIPEHWLTQLEPPASMHYML | |
199 GVFYIFLFCASTVGNGMVIWIFSTSKSLRTPSNMFVLNLAVFDLIMCLK--APIF--NSF | |
200 H-RGFAIYLGNTWCQIFASIGSYSGIGAGMTNAAIGYDRYNVITKPMNR--NMTFTKAVI | |
201 MNIIIWLYCTPW-VVLPLTQFW-----DRFVPEGYLTSCSFDYLS--DNFDTRLFVGTIF | |
202 FFSFVCPTLMILYYYSQIVGHVFSHEKALREQAKK------------------------- | |
203 --------------------------------------------------MN-------- | |
204 --VESL------------------------------------------------------ | |
205 ----------RSNVDKSKET------AEIRIAKAAITICFLFFVSWTPYGVMSLIGAF-G | |
206 DKS--LLTQGATMIPACTCKLVACIDPFVYAISHPRYRLELQKRCPWLGV---------N | |
207 EKSG--EISSAQST-TTQEQ--QQTTAA-------------------------------- | |
208 --------------------------------------------------------- | |
209 > 17== X65880 1 Drosophila pseudoobscura Dpse\Rh4 <>[Genetics132(1),193-204'92 | |
210 ----------MD------------------AL-CNASEPPLRP----------------E | |
211 ARMS--SG---S----DELQFLGWNVPPDQIQ--------YIPEHWLTQLEPPASMHYML | |
212 GVFYIFLFFASTLGNGMVIWIFSTSKSLRTPSNMFVLNLAVFDLIMCLK--APIFIYNSF | |
213 H-RGFA--LGNTWCQIFASIGSYSGIGAGMTNAAIGYDRYNVITKPMNR--NMTFTKAVI | |
214 MNIIIWLYCTPW-VVLPLTQFW-----DRFVPEGYLTSCSFDYLS--DNFDTRLFVGTIF | |
215 LFSFVVPTLMILYYYSQIVGHVFNHEKALREQAKK------------------------- | |
216 --------------------------------------------------MN-------- | |
217 --VESL------------------------------------------------------ | |
218 ----------RSNVDKSKET------AEIRIAKAAITICFLFFVSWTPYGVMSLIGAF-G | |
219 DKS--LLTPGATMIPACTCKLVACIEPFVYAISHPRYRMELQKRCPWLGV---------N | |
220 EKSG--EASSAQST-TTQEQ-TQQTSAA-------------------------------- | |
221 --------------------------------------------------------- | |
222 > 18== D50584 1 Hemigrapsus sanguineus opsin BcRh2 <compound eye>[J.Exp.Biol.1 | |
223 --------------------------------MTNATGPQMAY----------------Y | |
224 GAAS--MD-FGY----PEGVSIVDFVRPEIKP--------YVHQHWYNYPPVNPMWHYLL | |
225 GVIYLFLGTVSIFGNGLVIYLFNKSAALRTPANILVVNLALSDLIMLTTN-VPFFTYNCF | |
226 SGGVWM--FSPQYCEIYACLGAITGVCSIWLLCMISFDRYNIICNGFNG-PKLTTGKAVV | |
227 FALISWVIAIGC-ALPPFFG-W-----GNYILEGILDSCSYDYLT--QDFNTFSYNIFIF | |
228 VFDYFLPAAIIVFSYVFIVKAIFAHEAAMRAQAKK------------------------- | |
229 --------------------------------------------------MN-------- | |
230 --VSTL------------------------------------------------------ | |
231 ----------RS-NEADAQR------AEIRIAKTALVNVSLWFICWTPYALISLKGVM-G | |
232 DTS--GITPLVSTLPALLAKSCSCYNPFVYAISHPKYRLAITQHLPWFCV------HE-T | |
233 ETKS--NDDSQSNSTVAQDK-A-------------------------------------- | |
234 --------------------------------------------------------- | |
235 > 19== D50583 1 Hemigrapsus sanguineus opsin BcRh1 <compound eye>[J.Exp.Biol.1 | |
236 --------------------------------MANVTGPQMAF----------------Y | |
237 GSGA--AT-FGY----PEGMTVADFVPDRVKH--------MVLDHWYNYPPVNPMWHYLL | |
238 GVVYLFLGVISIAGNGLVIYLYMKSQALKTPANMLIVNLALSDLIMLTTN-FPPFCYNCF | |
239 SGGRWM--FSGTYCEIYAALGAITGVCSIWTLCMISFDRYNIICNGFNG-PKLTQGKATF | |
240 MCGLAWVISVGW-SLPPFFG-W-----GSYTLEGILDSCSYDYFT--RDMNTITYNICIF | |
241 IFDFFLPASVIVFSYVFIVKAIFAHEAAMRAQAKK------------------------- | |
242 --------------------------------------------------MN-------- | |
243 --VTNL------------------------------------------------------ | |
244 ----------RS-NEAETQR------AEIRIAKTALVNVSLWFICWTPYAAITIQGLL-G | |
245 NAE--GITPLLTTLPALLAKSCSCYNPFVYAISHPKFRLAITQHLPWFCV------HE-K | |
246 DPND--VEENQSSNTQTQEK-S-------------------------------------- | |
247 --------------------------------------------------------- | |
248 > 20== K02320 1 D.melanogaster opsin <>[Cell40,851-858'85] | |
249 ----------ME----SF------------AVAAAQLGPHFAP----------------L | |
250 S-----------------NGSVVDKVTPDMAH--------LISPYWNQFPAMDPIWAKIL | |
251 TAYMIMIGMISWCGNGVVIYIFATTKSLRTPANLLVINLAISDFGIMITN-TPMMGINLY | |
252 F-ETWV--LGPMMCDIYAGLGSAFGCSSIWSMCMISLDRYQVIVKGMAG-RPMTIPLALG | |
253 KM---------------------------YVPEGNLTSCGIDYLE--RDWNPRSYLIFYS | |
254 IFVYYIPLFLICYSYWFIIAAVSAHEKAMREQAKK------------------------- | |
255 --------------------------------------------------MN-------- | |
256 --VKSL------------------------------------------------------ | |
257 ----------RS-SEDAEKS------AEGKLAKVALVTITLWFMAWTPYLVINCMGLF-K | |
258 F-E--GLTPLNTIWGACFAKSAACYNPIVYGISHPKYRLALKEKCPCCVF------GK-V | |
259 DDGK--SSDAQSQA-TASEA-ESKA----------------------------------- | |
260 --------------------------------------------------------- | |
261 > 21== K02315 1 D.melanogaster ninaE <>[Cell40,839-850'85] | |
262 ----------ME----SF------------AVAAAQLGPHFAP----------------L | |
263 S-----------------NGSVVDKVTPDMAH--------LISPYWNQFPAMDPIWAKIL | |
264 TAYMIMIGMISWCGNGVVIYIFATTKSLRTPANLLVINLAISDFGIMITN-TPMMGINLY | |
265 F-ETWV--LGPMMCDIYAGLGSAFGCSSIWSMCMISLDRYQVIVKGMAG-RPMTIPLALG | |
266 KIAYIWFMSSIW-CLAPAFG-W-----SRYVPEGNLTSCGIDYLE--RDWNPRSYLIFYS | |
267 IFVYYIPLFLICYSYWFIIAAVSAHEKAMREQAKK------------------------- | |
268 --------------------------------------------------MN-------- | |
269 --VKSL------------------------------------------------------ | |
270 ----------RS-SEDAEKS------AEGKLAKVALVTITLWFMAWTPYLVINCMGLF-K | |
271 F-E--GLTPLNTIWGACFAKSAACYNPIVYGISHPKYRLALKEKCPCCVF------GK-V | |
272 DDGK--SSDAQSQA-TASEA-ESKA----------------------------------- | |
273 --------------------------------------------------------- | |
274 > 22== X65877 1 Drosophila pseudoobscura Dpse\ninaE <>[Genetics132(1),193-204' | |
275 ----------MD----SF------------AAVATQLGPQFAA----------------P | |
276 S-----------------NGSVVDKVTPDMAH--------LISPYWDQFPAMDPIWAKIL | |
277 TAYMIIIGMISWCGNGVVIYIFATTKSLRTPANLLVINLAISDFGIMITN-TPMMGINLY | |
278 F-ETWV--LGPMMCDIYAGLGSAFGCSSIWSMCMISLDRYQVIVKGMAG-RPMTIPLALG | |
279 KIAYIWFMSTIWCCLAPVFG-W-----SRYVPEGNLTSCGIDYLE--RDWNPRSYLIFYS | |
280 IFVYYIPLFLICYSYWFIIAAVSAHEKAMREQAKK------------------------- | |
281 --------------------------------------------------MN-------- | |
282 --VKSL------------------------------------------------------ | |
283 ----------RS-SEDADKS------AEGKLAKVALVTISLWFMAWTPYLVINCMGLF-K | |
284 F-E--GLTPLNTIWGACFAKSAACYNPIVYGISHPKYRLALKEKCPCCVF------GK-V | |
285 DDGK--SSEAQSQA-TTSEA-ESKA----------------------------------- | |
286 --------------------------------------------------------- | |
287 > 23== M12896 1 D.melanogaster Rh2 <>[Cell44,705-710'86] | |
288 -----MERSHLP----ET------------PFDLAHSGPRFQA----------------Q | |
289 SSG---------------NGSVLDNVLPDMAH--------LVNPYWSRFAPMDPMMSKIL | |
290 GLFTLAIMIISCCGNGVVVYIFGGTKSLRTPANLLVLNLAFSDFCMMASQ-SPVMIINFY | |
291 Y-ETWV--LGPLWCDIYAGCGSLFGCVSIWSMCMIAFDRYNVIVKGING-TPMTIKTSIM | |
292 KILFIWMMAVFW-TVMPLIG-W-----SAYVPEGNLTACSIDYMT--RMWNPRSYLITYS | |
293 LFVYYTPLFLICYSYWFIIAAVAAHEKAMREQAKK------------------------- | |
294 --------------------------------------------------MN-------- | |
295 --VKSL------------------------------------------------------ | |
296 ----------RS-SEDCDKS------AEGKLAKVALTTISLWFMAWTPYLVICYFGLF-K | |
297 I-D--GLTPLTTIWGATFAKTSAVYNPIVYGISHPKYRIVLKEKCPMCVF------GN-T | |
298 DEPK--PDAPASDTETTSEA-DSKA----------------------------------- | |
299 --------------------------------------------------------- | |
300 > 24== X65878 1 Drosophila pseudoobscura Dpse\Rh2 <>[Genetics132(1),193-204'92 | |
301 -----MERSLLP----EP------------PLAMALLGPRFEA----------------Q | |
302 TGG---------------NRSVLDNVLPDMAP--------LVNPHWSRFAPMDPTMSKIL | |
303 GLFTLVILIISCCGNGVVVYIFGGTKSLRTPANLLVLNLAFSDFCMMASQ-SPVMIINFY | |
304 Y-ETWV--LGPLWCDIYAACGSLFGCVSIWSMCMIAFDRYNVIVKGING-TPMTIKTSIM | |
305 KIAFIWMMAVFW-TIMPLIG-W-----SSYVPEGNLTACSIDYMT--RQWNPRSYLITYS | |
306 LFVYYTPLFMICYSYWFIIATVAAHEKAMRDQAKK------------------------- | |
307 --------------------------------------------------MN-------- | |
308 --VKSL------------------------------------------------------ | |
309 ----------RS-SEDCDKS------AENKLAKVALTTISLWFMAWTPYLIICYFGLF-K | |
310 I-D--GLTPLTTIWGATFAKTSAVYNPIVYGISHPNDRLVLKEKCPMCVC------GT-T | |
311 DEPK--PDAPPSDTETTSEA-ESKD----------------------------------- | |
312 --------------------------------------------------------- | |
313 > 25== U26026 1 Apis mellifera long-wavelength rhodopsin <>[] | |
314 --------------------------------MIAVSGPSYEA----------------F | |
315 SYGG--QARF-------NNQTVVDKVPPDMLH--------LIDANWYQYPPLNPMWHGIL | |
316 GFVIGMLGFVSAMGNGMVVYIFLSTKSLRTPSNLFVINLAISNFLMMFCM-SPPMVINCY | |
317 Y-ETWV--LGPLFCQIYAMLGSLFGCGSIWTMTMIAFDRYNVIVKGLSG-KPLSINGALI | |
318 RIIAIWLFSLGW-TIAPMFG-W-----NRYVPEGNMTACGTDYFN--RGLLSASYLVCYG | |
319 IWVYFVPLFLIIYSYWFIIQAVAAHEKNMREQAKK------------------------- | |
320 --------------------------------------------------MN-------- | |
321 --VASL------------------------------------------------------ | |
322 ----------RS-SENQNTS------AECKLAKVALMTISLWFMAWTPYLVINFSGIF-N | |
323 L-V--KISPLFTIWGSLFAKANAVYNPIVYGISHPKYRAALFAKFPSLAC-------A-A | |
324 EPSS--DAVSTTSGTTTVTD-NEKSNA--------------------------------- | |
325 --------------------------------------------------------- | |
326 > 26== L03781 1 Limulus polyphemus opsin <>[PNAS90,6150-6154'93] | |
327 ----------------------------------MANQLSYSS----------------L | |
328 GWPY--QP----------NASVVDTMPKEMLY--------MIHEHWYAFPPMNPLWYSIL | |
329 GVAMIILGIICVLGNGMVIYLMMTTKSLRTPTNLLVVNLAFSDFCMMAFM-MPTMTSNCF | |
330 A-ETWI--LGPFMCEVYGMAGSLFGCASIWSMVMITLDRYNVIVRGMAA-APLTHKKATL | |
331 LLLFVWIWSGGW-TILPFFG-W-----SRYVPEGNLTSCTVDYLT--KDWSSASYVVIYG | |
332 LAVYFLPLITMIYCYFFIVHAVAEHEKQLREQAKK------------------------- | |
333 --------------------------------------------------MN-------- | |
334 --VASL------------------------------------------------------ | |
335 ----------RANADQQKQS------AECRLAKVAMMTVGLWFMAWTPYLIISWAGVF-S | |
336 SGT--RLTPLATIWGSVFAKANSCYNPIVYGISHPRYKAALYQRFPSLAC------GS-G | |
337 ESGS--DVKSEASATTTMEE-KPKIPEA-------------------------------- | |
338 --------------------------------------------------------- | |
339 > 27== X07797 1 Octopus dofleini rhodopsin <>[FEBS232(1),69-72'88] | |
340 ---------------------------------------MVES----------------T | |
341 TLVN--QT-WWY------NPTVD------------------IHPHWAKFDPIPDAVYYSV | |
342 GIFIGVVGIIGILGNGVVIYLFSKTKSLQTPANMFIINLAMSDLSFSAINGFPLKTISAF | |
343 M-KKWI--FGKVACQLYGLLGGIFGFMSINTMAMISIDRYNVIGRPMAASKKMSHRRAFL | |
344 MIIFVWMWSIVW-SVGPVFN-W-----GAYVPEGILTSCSFDYLS--TDPSTRSFILCMY | |
345 FCGFMLPIIIIAFCYFNIVMSVSNHEKEMAAMAKR------------------------- | |
346 --------------------------------------------------LN-------- | |
347 --AKEL------------------------------------------------------ | |
348 ----------R--KAQAGAS------AEMKLAKISMVIITQFMLSWSPYAIIALLAQF-G | |
349 PAE--WVTPYAAELPVLFAKASAIHNPIVYSVSHPKFREAIQTTFPWLLTCCQFDEKE-C | |
350 EDAN--DAEEEVVASER--G-GESRDAAQMKEMMAMMQKMQAQQAAYQPPPPPQGY--PP | |
351 QGYPPQGAYPPPQGYPPQGYPPQGYPPQGYPPQGAPPQVEAPQGAPPQGVDNQAYQA | |
352 > 28== X70498 1 Todarodes pacificus rhodopsin <retina>[FEBS317(1-2),5-11'93] | |
353 ----------------------------------------MGR----------------D | |
354 LRDN--ET-WWY------NPSIV------------------VHPHWREFDQVPDAVYYSL | |
355 GIFIGICGIIGCGGNGIVIYLFTKTKSLQTPANMFIINLAFSDFTFSLVNGFPLMTISCF | |
356 L-KKWI--FGFAACKVYGFIGGIFGFMSIMTMAMISIDRYNVIGRPMAASKKMSHRRAFI | |
357 MIIFVWLWSVLW-AIGPIFG-W-----GAYTLEGVLCNCSFDYIS--RDSTTRSNILCMF | |
358 ILGFFGPILIIFFCYFNIVMSVSNHEKEMAAMAKR------------------------- | |
359 --------------------------------------------------LN-------- | |
360 --AKEL------------------------------------------------------ | |
361 ----------R--KAQAGAN------AEMRLAKISIVIVSQFLLSWSPYAVVALLAQF-G | |
362 PLE--WVTPYAAQLPVMFAKASAIHNPMIYSVSHPKFREAISQTFPWVLTCCQFDDKE-T | |
363 EDDK--DAETEIPAGESSDA-APSADAAQMKEMMAMMQKMQQQQAAY----PPQGYAPPP | |
364 QGYPPQGY--PPQGYPPQGYPPQGYPP---PPQGAPPQ-GAPPAAPPQGVDNQAYQA | |
365 > 29== L21195 1 human serotonin 5-HT7 receptor protein <placenta and fetal bra | |
366 ---------MMDVNSSGRPDLYGHLRSFL-LPEVGRGLPDLSPDGGA------------D | |
367 PVAGSWAPHLLS------EVTASPAPTWDAPPDNASGCGEQIN--------YGRVEKVVI | |
368 GSILTLITLLTIAGNCLVVISVCFVKKLRQPSNYLIVSLALADLSVAVAV-MPFVSVTDL | |
369 IGGKWI--FGHFFCNVFIAMDVMCCTASIMTLCVISIDRYLGITRPLTYPVRQNGKCMAK | |
370 MILSVWLLSASI-TLPPLFG-W-----AQNVNDDKVCLISQDF----------GYTIYST | |
371 AVAFYIPMSVMLFMYYQIY-------KAARKSAAKHKF---------------------- | |
372 ---------------------------------PGFPRV----EPDSVIALNG------- | |
373 --IVKL----------------------QK---------EVEECAN-------------- | |
374 ----LSRLLKHERKNISIFK------REQKAATTLGIIVGAFTVCWLPFFLLSTARPFIC | |
375 GTSCSCIPLWVERTFLWLGYANSLINPFIYAFFNRDLRTTYRSLLQCQYR----NINR-- | |
376 ------KLSAAGMHEALKLAERPERPEF------------VLQNADY------------- | |
377 --------------------------------------------CRKKGHDS----- | |
378 > 30== L15228 1 rat 5HT-7 serotonin receptor <>[JBC268,18200-18204'93] | |
379 ------------------------------------------------------------ | |
380 ------MPHLLS---GFLEVTASPAPTWDAPPDNVSGCGEQIN--------YGRVEKVVI | |
381 GSILTLITLLTIAGNCLVVISVSFVKKLRQPSNYLIVSLALADLSVAVAV-MPFVSVTDL | |
382 IGGKWI--FGHFFCNVFIAMDVMCCTASIMTLCVISIDRYLGITRPLTYPVRQNGKCMAK | |
383 MILSVWLLSASI-TLPPLFG-W-----AQNVNDDKVCLISQDF----------GYTIYST | |
384 AVAFYIPMSVMLFMYYQIY-------KAARKSAAKHKF---------------------- | |
385 ---------------------------------PGFPRV----QPESVISLNG------- | |
386 --VVKL----------------------QK---------EVEECAN-------------- | |
387 ----LSRLLKHERKNISIFK------REQKAATTLGIIVGAFTVCWLPFFLLSTARPFIC | |
388 GTSCSCIPLWVERTCLWLGYANSLINPFIYAFFNRDLRPTSRSLLQCQYR----NINR-- | |
389 ------KLSAAGMHEALKLAERPERSEF------------VLQNSDH------------- | |
390 --------------------------------------------CGKKGHDT----- | |
391 > 31=p A47425 serotonin receptor 5HT-7 - rat | |
392 ------------------------------------------------------------ | |
393 ------MPHLLS---GFLEVTASPAPTWDAPPDNVSGCGEQIN--------YGRVEKVVI | |
394 GSILTLITLLTIAGNCLVVISVSFVKKLRQPSNYLIVSLALADLSVAVAV-MPFVSVTDL | |
395 IGGKWI--FGHFFCNVFIAMDVMCCTASIMTLCVISIDRYLGITRPLTYPVRQNGKCMAK | |
396 MILSVWLLSASI-TLPPLFG-W-----AQNVNDDKVCLISQDF----------GYTIYST | |
397 AVAFYIPMSVMLFMYYQIY-------KAARKSAAKHKF---------------------- | |
398 ---------------------------------PGFPRV----QPESVISLNG------- | |
399 --VVKL----------------------QK---------EVEECAN-------------- | |
400 ----LSRLLKHERKNISIFK------REQKAATTLGIIVGAFTVCWLPFFLLSTARPFIC | |
401 GTSCSCIPLWVERTCLWLGYANSLINPFIYAFFNRDLRTTYRSLLQCQYR----NINR-- | |
402 ------KLSAAGMHEALKLAERPERSEF------------VLQNSDH------------- | |
403 --------------------------------------------CGKKGHDT----- | |
404 > 32== M83181 1 human serotonin receptor <>[JBC267(11),7553-7562'92] | |
405 ----------MDVLSP-------------------------------------------- | |
406 ---------------GQGNNTTSPPAPFET-GGNTTGISDVT---------VSYQ--VIT | |
407 SLLLGTLIFCAVLGNACVVAAIALERSLQNVANYLIGSLAVTDLMVSVLV-LPMAALYQV | |
408 L-NKWT--LGQVTCDLFIALDVLCCTSSILHLCAIALDRYWAITDPIDYVNKRTPRRAAA | |
409 LISLTWLIGFLI-SIPPMLG-WRTPEDRSDPD---ACTISKDH----------GYTIYST | |
410 FGAFYIPLLLMLVLYGRIF-------RAARFRIRK------------------------- | |
411 --------------TVKKVEKTGADTRHGASPAPQPKKS-----------VNGESGSR-- | |
412 -------NWRLGVESKAGGALCANGAVRQGDDGAALEVIEVHRVGNSKEHLPLPSEAG-- | |
413 PTPCAPASFERKNERNAEAKRKMALARERKTVKTLGIIMGTFILCWLPFFIVALVLPF-C | |
414 ESSC-HMPTLLGAIINWLGYSNSLLNPVIYAYFNKDFQNAFKKIIKCKFC----RQ---- | |
415 ------------------------------------------------------------ | |
416 --------------------------------------------------------- | |
417 > 33=p A35181 serotonin receptor class 1A - rat | |
418 ----------MDVFSF-------------------------------------------- | |
419 ---------------GQGNNTTASQEPFGT-GGNVTSISDVT---------FSYQ--VIT | |
420 SLLLGTLIFCAVLGNACVVAAIALERSLQNVANYLIGSLAVTDLMVSVLV-LPMAALYQV | |
421 L-NKWT--LGQVTCDLFIALDVLCCTSSILHLCAIALDRYWAITDPIDYVNKRTPRRAAA | |
422 LISLTWLIGFLI-SIPPMLG-WRTPEDRSDPD---ACTISKDH----------GYTIYST | |
423 FGAFYIPLLLMLVLYGRIF-------RAARFRIRK------------------------- | |
424 --------------TVRKVEKKGAGTSLGTSSAPPPKKS-----------LNGQPGSG-- | |
425 -------DWRRCAENRAVGTPCTNGAVRQGDDEATLEVIEVHRVGNSKEHLPLPSESG-- | |
426 SNSYAPACLERKNERNAEAKRKMALARERKTVKTLGIIMGTFILCWLPFFIVALVLPF-C | |
427 ESSC-HMPALLGAIINWLGYSNSLLNPVIYAYFNKDFQNAFKKIIKCKFC----RR---- | |
428 ------------------------------------------------------------ | |
429 --------------------------------------------------------- | |
430 > 34== L06803 1 Lymnaea stagnalis serotonin receptor <>[PNAS90,11-15'93] | |
431 MANFTFGDLALDVARMG-----GLASTPSGLRSTGLTTPGLSPTGLV------------T | |
432 SDFN--DSYGLT---GQFINGSHSSRSRDNASANDTSATNMTDDRYWSLTVYSHEHLVLT | |
433 SVILGLFVLCCIIGNCFVIAAVMLERSLHNVANYLILSLAVADLMVAVLV-MPLSVVSEI | |
434 S-KVWF--LHSEVCDMWISVDVLCCTASILHLVAIAMDRYWAVTS-IDYIRRRSARRILL | |
435 MIMVVWIVALFI-SIPPLFG-WRDP--NNDPDKTGTCIISQDK----------GYTIFST | |
436 VGAFYLPMLVMMIIYIRIW-------LVARSRIRKDKFQMTKARLKTEETTLVASPKTEY | |
437 SVVSDCNGCNSPDSTTEKKKRRAPFKSYGCSPRPERKKNRAKKLPENANGVNSNSSS--- | |
438 -------SERLKQIQIETAEAFANGCA----EEASIAMLERQ-CNNGKKISSNDTPYS-- | |
439 -----------RTREKLELK------RERKAARTLAIITGAFLICWLPFFIIALIGPF-V | |
440 DPE--GIPPFARSFVLWLGYFNSLLNPIIYTIFSPEFRSAFQKILFGKYR----RGHR-- | |
441 ------------------------------------------------------------ | |
442 --------------------------------------------------------- | |
443 > 35=p A47174 serotonin receptor, 5HTlym receptor - great pond snail | |
444 MANFTFGDLALDVARMG-----GLASTPSGLRSTGLTTPGLSPTGLV------------T | |
445 SDFN--DSYGLT---GQFINGSHSSRSRDNASANDTSATNMTDDRYWSLTVYSHEHLVLT | |
446 SVILGLFVLCCIIGNCFVIAAVMLERSLHNVANYLILSLAVADLMVAVLV-MPLSVVSEI | |
447 S-KVWF--LHSEVCDMWISVDVLCCTASILHLVAIAMDRYWAVTS-IDYIRRRSARRILL | |
448 MIMVVWIVALFI-SIPPLFG-WRDP--NNDPDKTGTCIISQDK----------GYTIFST | |
449 VGAFYLPMLVMMIIYIRIW-------LVARSRIRKDKFQMTKARLKTEETTLVASPKTEY | |
450 SVVSDCNGCNSPDSTTEKKKRRAPFKSYGCSPRPERKKNRAKKLPENANGVNSNSSS--- | |
451 -------SERLKQIQIETAEAFANGCA----EEASIAMLERQ-CNNGKKISSNDTPYS-- | |
452 -----------RTREKLELK------RERKAARTLAIITGAFLICWLPFFIIALIGPF-V | |
453 DPE--GIPPFARSFVLWLGYFNSLLNPIIYTIFSPEFRSAFQKILFGKYR----RGHR-- | |
454 ------------------------------------------------------------ | |
455 --------------------------------------------------------- | |
456 > 36== X95604 1 Bombyx mori serotonin receptor <antennae>[InsectBiochem.Mol.Bi | |
457 -MEGAEGQEELDWEAL-------YLRLP--LQNCSWNSTGWEPNWNV------------T | |
458 VVPN--TTWW------------QASAPFDTPAALVRAAAK-------------------- | |
459 AVVLGLLILATVVGNVFVIAAILLERHLRSAANNLILSLAVADLLVACLV-MPLGAVYEV | |
460 V-QRWT--LGPELCDMWTSGDVLCCTASILHLVAIALDRYWAVTN-IDYIHASTAKRVGM | |
461 MIACVWTVSFFV-CIAQLLG-WKDPDWNQRVSEDLRCVVSQDV----------GYQIFAT | |
462 ASSFYVPVLIILILYWRIY-------QTARKRIR-------------------------- | |
463 -------------------RRRGATARGGVGPPP---------VPAGGALVAGGGSGGIA | |
464 AAVVAVIGRPLPTISETTTTGFTNVSS----NNTSP---EKQSCANGLEADPPTTGYGAV | |
465 AAAYYPSLVRRKPKEAADSK------RERKAAKTLAIITGAFVACWLPFFVLAILVPT-C | |
466 DCE---VSPVLTSLSLWLGYFNSTLNPVIYTVFSPEFRHAFQRLLCGRRV----RRRR-- | |
467 ------A---------------PQ------------------------------------ | |
468 --------------------------------------------------------- |