comparison test-data/mafft_default.aln @ 15:bf28a8cff401 draft

planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/mafft commit 2f6456c314c010fd73f5eeaf809a9afce47353af
author bgruening
date Wed, 20 Mar 2024 07:34:52 +0000
parents
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comparison
equal deleted inserted replaced
14:6f28e90db932 15:bf28a8cff401
1 > 1== M63632 1 Lampetra japonica rhodopsin <>[BBRC174,1125-1132'91]
2 ----------------------------------------MNG----------------T
3 E--G--DNFYVP----FSNKTGLARSPYEYPQY-------YLAEPWK---------YSAL
4 AAYMFFLILVGFPVNFLTLFVTVQHKKLRTPLNYILLNLAMANLFMVLFG-FTVTMYTSM
5 N-GYFV--FGPTMCSIEGFFATLGGEVALWSLVVLAIERYIVICKPMGN-FRFGNTHAIM
6 GVAFTWIMALAC-AAPPLVG-W-----SRYIPEGMQCSCGPDYYTLNPNFNNESYVVYMF
7 VVHFLVPFVIIFFCYGRLLCTV----KEAAAAQQ--------------------------
8 ------------------------------------------------------------
9 ------------------------------------------------------------
10 -------------ESASTQK------AEKEVTRMVVLMVIGFLVCWVPYASVAFYIFT-H
11 QGS--DFGATFMTLPAFFAKSSALYNPVIYILMNKQFRNCMITTLCC--------GKNPL
12 GDDE--SGASTSKTEVSSVS-TSPVSPA--------------------------------
13 ---------------------------------------------------------
14 > 2== U22180 1 rat opsin <rod>[J.Mol.Neurosci.5(3),207-209'94]
15 ----------------------------------------MNG----------------T
16 E--G--PNFYVP----FSNITGVVRSPFEQPQY-------YLAEPWQ---------FSML
17 AAYMFLLIVLGFPINFLTLYVTVQHKKLRTPLNYILLNLAVADLFMVFGG-FTTTLYTSL
18 H-GYFV--FGPTGCNLEGFFATLGGEIGLWSLVVLAIERYVVVCKPMSN-FRFGENHAIM
19 GVAFTWVMALAC-AAPPLVG-W-----SRYIPEGMQCSCGIDYYTLKPEVNNESFVIYMF
20 VVHFTIPMIVIFFCYGQLVFTV----KEAAAQQQ--------------------------
21 ------------------------------------------------------------
22 ------------------------------------------------------------
23 -------------ESATTQK------AEKEVTRMVIIMVIFFLICWLPYASVAMYIFT-H
24 QGS--NFGPIFMTLPAFFAKTASIYNPIIYIMMNKQFRNCMLTSLCC--------GKNPL
25 GDDE--ASATASKTE------TSQVAPA--------------------------------
26 ---------------------------------------------------------
27 > 3== M92038 1 chicken green sensitive cone opsin <retina>[PNAS89,5932-5936'9
28 ----------------------------------------MNG----------------T
29 E--G--INFYVP----MSNKTGVVRSPFEYPQY-------YLAEPWK---------YRLV
30 CCYIFFLISTGLPINLLTLLVTFKHKKLRQPLNYILVNLAVADLFMACFG-FTVTFYTAW
31 N-GYFV--FGPVGCAVEGFFATLGGQVALWSLVVLAIERYIVVCKPMGN-FRFSATHAMM
32 GIAFTWVMAFSC-AAPPLFG-W-----SRYMPEGMQCSCGPDYYTHNPDYHNESYVLYMF
33 VIHFIIPVVVIFFSYGRLICKV----REAAAQQQ--------------------------
34 ------------------------------------------------------------
35 ------------------------------------------------------------
36 -------------ESATTQK------AEKEVTRMVILMVLGFMLAWTPYAVVAFWIFT-N
37 KGA--DFTATLMAVPAFFSKSSSLYNPIIYVLMNKQFRNCMITTICC--------GKNPF
38 GDEDVSSTVSQSKTEVSSVS-SSQVSPA--------------------------------
39 ---------------------------------------------------------
40 > 4=p A45229 opsin, green-sensitive (clone GFgr-1) - goldfish
41 ----------------------------------------MNG----------------T
42 E--G--KNFYVP----MSNRTGLVRSPFEYPQY-------YLAEPWQ---------FKIL
43 ALYLFFLMSMGLPINGLTLVVTAQHKKLRQPLNFILVNLAVAGTIMVCFG-FTVTFYTAI
44 N-GYFV--LGPTGCAVEGFMATLGGEVALWSLVVLAIERYIVVCKPMGS-FKFSSSHAFA
45 GIAFTWVMALAC-AAPPLFG-W-----SRYIPEGMQCSCGPDYYTLNPDYNNESYVIYMF
46 VCHFILPVAVIFFTYGRLVCTV----KAAAAQQQ--------------------------
47 ------------------------------------------------------------
48 ------------------------------------------------------------
49 -------------DSASTQK------AEREVTKMVILMVFGFLIAWTPYATVAAWIFF-N
50 KGA--DFSAKFMAIPAFFSKSSALYNPVIYVLLNKQFRNCMLTTIFC--------GKNPL
51 GDDE-SSTVSTSKTEVSS------VSPA--------------------------------
52 ---------------------------------------------------------
53 > 5=p B45229 opsin, green-sensitive (clone GFgr-2) - goldfish
54 ----------------------------------------MNG----------------T
55 E--G--NNFYVP----LSNRTGLVRSPFEYPQY-------YLAEPWQ---------FKLL
56 AVYMFFLICLGLPINGLTLICTAQHKKLRQPLNFILVNLAVAGAIMVCFG-FTVTFYTAI
57 N-GYFA--LGPTGCAVEGFMATLGGEVALWSLVVLAIERYIVVCKPMGS-FKFSSTHASA
58 GIAFTWVMAMAC-AAPPLVG-W-----SRYIPEGIQCSCGPDYYTLNPEYNNESYVLYMF
59 ICHFILPVTIIFFTYGRLVCTV----KAAAAQQQ--------------------------
60 ------------------------------------------------------------
61 ------------------------------------------------------------
62 -------------DSASTQK------AEREVTKMVILMVLGFLVAWTPYATVAAWIFF-N
63 KGA--AFSAQFMAIPAFFSKTSALYNPVIYVLLNKQFRSCMLTTLFC--------GKNPL
64 GDEE-SSTVSTSKTEVSS------VSPA--------------------------------
65 ---------------------------------------------------------
66 > 6== L11864 1 Carassius auratus blue cone opsin <retina>[Biochemistry32,208-
67 ----------------------------------------MKQ----------------V
68 PEFH--EDFYIPIPLDINNLS--AYSPFLVPQD-------HLGNQGI---------FMAM
69 SVFMFFIFIGGASINILTILCTIQFKKLRSHLNYILVNLSIANLFVAIFG-SPLSFYSFF
70 N-RYFI--FGATACKIEGFLATLGGMVGLWSLAVVAFERWLVICKPLGN-FTFKTPHAIA
71 GCILPWISALAA-SLPPLFG-W-----SRYIPEGLQCSCGPDWYTTNNKYNNESYVMFLF
72 CFCFAVPFGTIVFCYGQLLITL----KLAAKAQA--------------------------
73 ------------------------------------------------------------
74 ------------------------------------------------------------
75 -------------DSASTQK------AEREVTKMVVVMVLGFLVCWAPYASFSLWIVS-H
76 RGE--EFDLRMATIPSCLSKASTVYNPVIYVLMNKQFRSCMM-KMVC--------GKN-I
77 EEDE--ASTSSQVTQVSS------VAPEK-------------------------------
78 ---------------------------------------------------------
79 > 7== M13299 1 human BCP <>[Science232(4747),193-202'86]
80 ----------------------------------------MRK----------------M
81 S--E--EEFYL-----FKNIS--SVGPWDGPQY-------HIAPVWA---------FYLQ
82 AAFMGTVFLIGFPLNAMVLVATLRYKKLRQPLNYILVNVSFGGFLLCIFS-VFPVFVASC
83 N-GYFV--FGRHVCALEGFLGTVAGLVTGWSLAFLAFERYIVICKPFGN-FRFSSKHALT
84 VVLATWTIGIGV-SIPPFFG-W-----SRFIPEGLQCSCGPDWYTVGTKYRSESYTWFLF
85 IFCFIVPLSLICFSYTQLLRAL----KAVAAQQQ--------------------------
86 ------------------------------------------------------------
87 ------------------------------------------------------------
88 -------------ESATTQK------AEREVSRMVVVMVGSFCVCYVPYAAFAMYMVN-N
89 RNH--GLDLRLVTIPSFFSKSACIYNPIIYCFMNKQFQACIM-KMVC--------GKA-M
90 TDES--DTCSSQKTEVSTVS-STQVGPN--------------------------------
91 ---------------------------------------------------------
92 > 8=opsin, greensensitive human (fragment) S07060
93 ------------------------------------------------------------
94 ------------------------------------------------------------
95 ------------------------------------------DLAETVIA-STISIVNQV
96 S-GYFV--LGHPMCVLEGYTVSLCGITGLWSLAIISWERWLVVCKPFGN-VRFDAKLAIV
97 GIAFSWIWAAVW-TAPPIFG-W-----SRYWPHGLKTSCGPDVFSGSSYPGVQSYMIVLM
98 VTCCITPLSIIVLCYLQVWLAI----RAVAKQQK--------------------------
99 ------------------------------------------------------------
100 ------------------------------------------------------------
101 -------------ESESTQK------AEKEVTRMVVVMVLAFC-----------------
102 ------------------------------------------------------------
103 ------------------------------------------------------------
104 ---------------------------------------------------------
105 > 9== K03494 1 human GCP <>[Science232(4747),193-202'86]
106 ----------------------------------------MAQQWSLQRLAGRHPQDSYE
107 DSTQ--SSIFT-----YTNSNS-TRGPFEGPNY-------HIAPRWV---------YHLT
108 SVWMIFVVIASVFTNGLVLAATMKFKKLRHPLNWILVNLAVADLAETVIA-STISVVNQV
109 Y-GYFV--LGHPMCVLEGYTVSLCGITGLWSLAIISWERWMVVCKPFGN-VRFDAKLAIV
110 GIAFSWIWAAVW-TAPPIFG-W-----SRYWPHGLKTSCGPDVFSGSSYPGVQSYMIVLM
111 VTCCITPLSIIVLCYLQVWLAI----RAVAKQQK--------------------------
112 ------------------------------------------------------------
113 ------------------------------------------------------------
114 -------------ESESTQK------AEKEVTRMVVVMVLAFCFCWGPYAFFACFAAA-N
115 PGY--PFHPLMAALPAFFAKSATIYNPVIYVFMNRQFRNCIL-QLF---------GKK-V
116 DDGS--ELSSASKTEVSSV---SSVSPA--------------------------------
117 ---------------------------------------------------------
118 > 10== Z68193 1 human Red Opsin <>[]
119 ----------------------------------------MAQQWSLQRLAGRHPQDSYE
120 DSTQ--SSIFT-----YTNSNS-TRGPFEGPNY-------HIAPRWV---------YHLT
121 SVWMIFVVTASVFTNGLVLAATMKFKKLRHPLNWILVNLAVADLAETVIA-STISIVNQV
122 S-GYFV--LGHPMCVLEGYTVSLCGITGLWSLAIISWERWLVVCKPFGN-VRFDAKLAIV
123 GIAFSWIWSAVW-TAPPIFG-W-----SRYWPHGLKTSCGPDVFSGSSYPGVQSYMIVLM
124 VTCCIIPLAIIMLCYLQVWLAI----RAVAKQQK--------------------------
125 ------------------------------------------------------------
126 ------------------------------------------------------------
127 -------------ESESTQK------AEKEVTRMVVVMIFAYCVCWGPYTFFACFAAA-N
128 PGY--AFHPLMAALPAYFAKSATIYNPVIYVFMNRQFRNCIL-QLF---------GKK-V
129 DDGS--ELSSASKTEVSSV---SSVSPA--------------------------------
130 ---------------------------------------------------------
131 > 11== M92036 1 Gecko gecko P521 <retina>[PNAS89,6841-6845'92]
132 ----------------------------------------MTEAWNVAVFAARRSRDD-D
133 DTTR--GSVFT-----YTNTNN-TRGPFEGPNY-------HIAPRWV---------YNLV
134 SFFMIIVVIASCFTNGLVLVATAKFKKLRHPLNWILVNLAFVDLVETLVA-STISVFNQI
135 F-GYFI--LGHPLCVIEGYVVSSCGITGLWSLAIISWERWFVVCKPFGN-IKFDSKLAII
136 GIVFSWVWAWGW-SAPPIFG-W-----SRYWPHGLKTSCGPDVFSGSVELGCQSFMLTLM
137 ITCCFLPLFIIIVCYLQVWMAI----RAVAAQQK--------------------------
138 ------------------------------------------------------------
139 ------------------------------------------------------------
140 -------------ESESTQK------AEREVSRMVVVMIVAFCICWGPYASFVSFAAA-N
141 PGY--AFHPLAAALPAYFAKSATIYNPVIYVFMNRQFRNCIM-QLF---------GKK-V
142 DDGS--EASTTSRTEVSSVS-NSSVAPA--------------------------------
143 ---------------------------------------------------------
144 > 12== M62903 1 chicken visual pigment <>[BBRC173,1212-1217'90]
145 ----------------------------------------MAA-WEAAFAARRRHEE--E
146 DTTR--DSVFT-----YTNSNN-TRGPFEGPNY-------HIAPRWV---------YNLT
147 SVWMIFVVAASVFTNGLVLVATWKFKKLRHPLNWILVNLAVADLGETVIA-STISVINQI
148 S-GYFI--LGHPMCVVEGYTVSACGITALWSLAIISWERWFVVCKPFGN-IKFDGKLAVA
149 GILFSWLWSCAW-TAPPIFG-W-----SRYWPHGLKTSCGPDVFSGSSDPGVQSYMVVLM
150 VTCCFFPLAIIILCYLQVWLAI----RAVAAQQK--------------------------
151 ------------------------------------------------------------
152 ------------------------------------------------------------
153 -------------ESESTQK------AEKEVSRMVVVMIVAYCFCWGPYTFFACFAAA-N
154 PGY--AFHPLAAALPAYFAKSATIYNPIIYVFMNRQFRNCIL-QLF---------GKK-V
155 DDGS--EVST-SRTEVSSVS-NSSVSPA--------------------------------
156 ---------------------------------------------------------
157 > 13== S75720 1 chicken P-opsin <>[Science267(5203),1502-1506'95]
158 ----------------------------------------MS-----------------S
159 NSSQ--AP-----------PNG-TPGPFDGPQW------PYQAPQST---------YVGV
160 AVLMGTVVACASVVNGLVIVVSICYKKLRSPLNYILVNLAVADLLVTLCG-SSVSLSNNI
161 N-GFFV--FGRRMCELEGFMVSLTGIVGLWSLAILALERYVVVCKPLGD-FQFQRRHAVS
162 GCAFTWGWALLW-SAPPLLG-W-----SSYVPEGLRTSCGPNWYTGGSNN--NSYILSLF
163 VTCFVLPLSLILFSYTNLLLTL----RAAAAQQK--------------------------
164 ------------------------------------------------------------
165 ------------------------------------------------------------
166 -------------EADTTQR------AEREVTRMVIVMVMAFLLCWLPYSTFALVVAT-H
167 KGI--IIQPVLASLPSYFSKTATVYNPIIYVFMNKQFQSCLL-EMLCCGY----QPQR-T
168 GKAS--PGTPGPHADVTAAGLRNKVMPAHPV-----------------------------
169 ---------------------------------------------------------
170 > 14== M17718 1 D.melanogaster Rh3 <>[J.Neurosci.7,1550-1557'87]
171 ----------MESGNVSS------------SLFGNVST-ALRP----------------E
172 ARLS--A----------ETRLLGWNVPPEELR--------HIPEHWLTYPEPPESMNYLL
173 GTLYIFFTLMSMLGNGLVIWVFSAAKSLRTPSNILVINLAFCDFMMMVK--TPIFIYNSF
174 H-QGYA--LGHLGCQIFGIIGSYTGIAAGATNAFIAYDRFNVITRPMEG--KMTHGKAIA
175 MIIFIYMYATPW-VVACYTETW-----GRFVPEGYLTSCTFDYLT--DNFDTRLFVACIF
176 FFSFVCPTTMITYYYSQIVGHVFSHEKALRDQAKK-------------------------
177 --------------------------------------------------MN--------
178 --VESL------------------------------------------------------
179 ----------RSNVDKNKET------AEIRIAKAAITICFLFFCSWTPYGVMSLIGAF-G
180 DKT--LLTPGATMIPACACKMVACIDPFVYAISHPRYRMELQKRCPWLAL---------N
181 EKAP--ESSAVASTSTTQEP--QQTTAA--------------------------------
182 ---------------------------------------------------------
183 > 15== X65879 1 Drosophila pseudoobscura Dpse\Rh3 <>[Genetics132(1),193-204'92
184 ----------MEYHNVSS------------VL-GNVSS-VLRP----------------D
185 ARLS--A----------ESRLLGWNVPPDELR--------HIPEHWLIYPEPPESMNYLL
186 GTLYIFFTVISMIGNGLVMWVFSAAKSLRTPSNILVINLAFCDFMMMIK--TPIFIYNSF
187 H-QGYA--LGHLGCQIFGVIGSYTGIAAGATNAFIAYDRYNVITRPMEG--KMTHGKAIA
188 MIIFIYLYATPW-VVACYTESW-----GRFVPEGYLTSCTFDYLT--DNFDTRLFVACIF
189 FFSFVCPTTMITYYYSQIVGHVFSHEKALRDQAKK-------------------------
190 --------------------------------------------------MN--------
191 --VDSL------------------------------------------------------
192 ----------RSNVDKSKEA------AEIRIAKAAITICFLFFASWTPYGVMSLIGAF-G
193 DKT--LLTPGATMIPACTCKMVACIDPFVYAISHPRYRMELQKRCPWLAI---------S
194 EKAP--ESRAAISTSTTQEQ--QQTTAA--------------------------------
195 ---------------------------------------------------------
196 > 16== M17730 1 D.melanogaster Rh4 opsin <>[J.Neurosci.7,1558-1566'87]
197 ----------ME------------------PL-CNASEPPLRP----------------E
198 AR-S--SG---N----GDLQFLGWNVPPDQIQ--------YIPEHWLTQLEPPASMHYML
199 GVFYIFLFCASTVGNGMVIWIFSTSKSLRTPSNMFVLNLAVFDLIMCLK--APIF--NSF
200 H-RGFAIYLGNTWCQIFASIGSYSGIGAGMTNAAIGYDRYNVITKPMNR--NMTFTKAVI
201 MNIIIWLYCTPW-VVLPLTQFW-----DRFVPEGYLTSCSFDYLS--DNFDTRLFVGTIF
202 FFSFVCPTLMILYYYSQIVGHVFSHEKALREQAKK-------------------------
203 --------------------------------------------------MN--------
204 --VESL------------------------------------------------------
205 ----------RSNVDKSKET------AEIRIAKAAITICFLFFVSWTPYGVMSLIGAF-G
206 DKS--LLTQGATMIPACTCKLVACIDPFVYAISHPRYRLELQKRCPWLGV---------N
207 EKSG--EISSAQST-TTQEQ--QQTTAA--------------------------------
208 ---------------------------------------------------------
209 > 17== X65880 1 Drosophila pseudoobscura Dpse\Rh4 <>[Genetics132(1),193-204'92
210 ----------MD------------------AL-CNASEPPLRP----------------E
211 ARMS--SG---S----DELQFLGWNVPPDQIQ--------YIPEHWLTQLEPPASMHYML
212 GVFYIFLFFASTLGNGMVIWIFSTSKSLRTPSNMFVLNLAVFDLIMCLK--APIFIYNSF
213 H-RGFA--LGNTWCQIFASIGSYSGIGAGMTNAAIGYDRYNVITKPMNR--NMTFTKAVI
214 MNIIIWLYCTPW-VVLPLTQFW-----DRFVPEGYLTSCSFDYLS--DNFDTRLFVGTIF
215 LFSFVVPTLMILYYYSQIVGHVFNHEKALREQAKK-------------------------
216 --------------------------------------------------MN--------
217 --VESL------------------------------------------------------
218 ----------RSNVDKSKET------AEIRIAKAAITICFLFFVSWTPYGVMSLIGAF-G
219 DKS--LLTPGATMIPACTCKLVACIEPFVYAISHPRYRMELQKRCPWLGV---------N
220 EKSG--EASSAQST-TTQEQ-TQQTSAA--------------------------------
221 ---------------------------------------------------------
222 > 18== D50584 1 Hemigrapsus sanguineus opsin BcRh2 <compound eye>[J.Exp.Biol.1
223 --------------------------------MTNATGPQMAY----------------Y
224 GAAS--MD-FGY----PEGVSIVDFVRPEIKP--------YVHQHWYNYPPVNPMWHYLL
225 GVIYLFLGTVSIFGNGLVIYLFNKSAALRTPANILVVNLALSDLIMLTTN-VPFFTYNCF
226 SGGVWM--FSPQYCEIYACLGAITGVCSIWLLCMISFDRYNIICNGFNG-PKLTTGKAVV
227 FALISWVIAIGC-ALPPFFG-W-----GNYILEGILDSCSYDYLT--QDFNTFSYNIFIF
228 VFDYFLPAAIIVFSYVFIVKAIFAHEAAMRAQAKK-------------------------
229 --------------------------------------------------MN--------
230 --VSTL------------------------------------------------------
231 ----------RS-NEADAQR------AEIRIAKTALVNVSLWFICWTPYALISLKGVM-G
232 DTS--GITPLVSTLPALLAKSCSCYNPFVYAISHPKYRLAITQHLPWFCV------HE-T
233 ETKS--NDDSQSNSTVAQDK-A--------------------------------------
234 ---------------------------------------------------------
235 > 19== D50583 1 Hemigrapsus sanguineus opsin BcRh1 <compound eye>[J.Exp.Biol.1
236 --------------------------------MANVTGPQMAF----------------Y
237 GSGA--AT-FGY----PEGMTVADFVPDRVKH--------MVLDHWYNYPPVNPMWHYLL
238 GVVYLFLGVISIAGNGLVIYLYMKSQALKTPANMLIVNLALSDLIMLTTN-FPPFCYNCF
239 SGGRWM--FSGTYCEIYAALGAITGVCSIWTLCMISFDRYNIICNGFNG-PKLTQGKATF
240 MCGLAWVISVGW-SLPPFFG-W-----GSYTLEGILDSCSYDYFT--RDMNTITYNICIF
241 IFDFFLPASVIVFSYVFIVKAIFAHEAAMRAQAKK-------------------------
242 --------------------------------------------------MN--------
243 --VTNL------------------------------------------------------
244 ----------RS-NEAETQR------AEIRIAKTALVNVSLWFICWTPYAAITIQGLL-G
245 NAE--GITPLLTTLPALLAKSCSCYNPFVYAISHPKFRLAITQHLPWFCV------HE-K
246 DPND--VEENQSSNTQTQEK-S--------------------------------------
247 ---------------------------------------------------------
248 > 20== K02320 1 D.melanogaster opsin <>[Cell40,851-858'85]
249 ----------ME----SF------------AVAAAQLGPHFAP----------------L
250 S-----------------NGSVVDKVTPDMAH--------LISPYWNQFPAMDPIWAKIL
251 TAYMIMIGMISWCGNGVVIYIFATTKSLRTPANLLVINLAISDFGIMITN-TPMMGINLY
252 F-ETWV--LGPMMCDIYAGLGSAFGCSSIWSMCMISLDRYQVIVKGMAG-RPMTIPLALG
253 KM---------------------------YVPEGNLTSCGIDYLE--RDWNPRSYLIFYS
254 IFVYYIPLFLICYSYWFIIAAVSAHEKAMREQAKK-------------------------
255 --------------------------------------------------MN--------
256 --VKSL------------------------------------------------------
257 ----------RS-SEDAEKS------AEGKLAKVALVTITLWFMAWTPYLVINCMGLF-K
258 F-E--GLTPLNTIWGACFAKSAACYNPIVYGISHPKYRLALKEKCPCCVF------GK-V
259 DDGK--SSDAQSQA-TASEA-ESKA-----------------------------------
260 ---------------------------------------------------------
261 > 21== K02315 1 D.melanogaster ninaE <>[Cell40,839-850'85]
262 ----------ME----SF------------AVAAAQLGPHFAP----------------L
263 S-----------------NGSVVDKVTPDMAH--------LISPYWNQFPAMDPIWAKIL
264 TAYMIMIGMISWCGNGVVIYIFATTKSLRTPANLLVINLAISDFGIMITN-TPMMGINLY
265 F-ETWV--LGPMMCDIYAGLGSAFGCSSIWSMCMISLDRYQVIVKGMAG-RPMTIPLALG
266 KIAYIWFMSSIW-CLAPAFG-W-----SRYVPEGNLTSCGIDYLE--RDWNPRSYLIFYS
267 IFVYYIPLFLICYSYWFIIAAVSAHEKAMREQAKK-------------------------
268 --------------------------------------------------MN--------
269 --VKSL------------------------------------------------------
270 ----------RS-SEDAEKS------AEGKLAKVALVTITLWFMAWTPYLVINCMGLF-K
271 F-E--GLTPLNTIWGACFAKSAACYNPIVYGISHPKYRLALKEKCPCCVF------GK-V
272 DDGK--SSDAQSQA-TASEA-ESKA-----------------------------------
273 ---------------------------------------------------------
274 > 22== X65877 1 Drosophila pseudoobscura Dpse\ninaE <>[Genetics132(1),193-204'
275 ----------MD----SF------------AAVATQLGPQFAA----------------P
276 S-----------------NGSVVDKVTPDMAH--------LISPYWDQFPAMDPIWAKIL
277 TAYMIIIGMISWCGNGVVIYIFATTKSLRTPANLLVINLAISDFGIMITN-TPMMGINLY
278 F-ETWV--LGPMMCDIYAGLGSAFGCSSIWSMCMISLDRYQVIVKGMAG-RPMTIPLALG
279 KIAYIWFMSTIWCCLAPVFG-W-----SRYVPEGNLTSCGIDYLE--RDWNPRSYLIFYS
280 IFVYYIPLFLICYSYWFIIAAVSAHEKAMREQAKK-------------------------
281 --------------------------------------------------MN--------
282 --VKSL------------------------------------------------------
283 ----------RS-SEDADKS------AEGKLAKVALVTISLWFMAWTPYLVINCMGLF-K
284 F-E--GLTPLNTIWGACFAKSAACYNPIVYGISHPKYRLALKEKCPCCVF------GK-V
285 DDGK--SSEAQSQA-TTSEA-ESKA-----------------------------------
286 ---------------------------------------------------------
287 > 23== M12896 1 D.melanogaster Rh2 <>[Cell44,705-710'86]
288 -----MERSHLP----ET------------PFDLAHSGPRFQA----------------Q
289 SSG---------------NGSVLDNVLPDMAH--------LVNPYWSRFAPMDPMMSKIL
290 GLFTLAIMIISCCGNGVVVYIFGGTKSLRTPANLLVLNLAFSDFCMMASQ-SPVMIINFY
291 Y-ETWV--LGPLWCDIYAGCGSLFGCVSIWSMCMIAFDRYNVIVKGING-TPMTIKTSIM
292 KILFIWMMAVFW-TVMPLIG-W-----SAYVPEGNLTACSIDYMT--RMWNPRSYLITYS
293 LFVYYTPLFLICYSYWFIIAAVAAHEKAMREQAKK-------------------------
294 --------------------------------------------------MN--------
295 --VKSL------------------------------------------------------
296 ----------RS-SEDCDKS------AEGKLAKVALTTISLWFMAWTPYLVICYFGLF-K
297 I-D--GLTPLTTIWGATFAKTSAVYNPIVYGISHPKYRIVLKEKCPMCVF------GN-T
298 DEPK--PDAPASDTETTSEA-DSKA-----------------------------------
299 ---------------------------------------------------------
300 > 24== X65878 1 Drosophila pseudoobscura Dpse\Rh2 <>[Genetics132(1),193-204'92
301 -----MERSLLP----EP------------PLAMALLGPRFEA----------------Q
302 TGG---------------NRSVLDNVLPDMAP--------LVNPHWSRFAPMDPTMSKIL
303 GLFTLVILIISCCGNGVVVYIFGGTKSLRTPANLLVLNLAFSDFCMMASQ-SPVMIINFY
304 Y-ETWV--LGPLWCDIYAACGSLFGCVSIWSMCMIAFDRYNVIVKGING-TPMTIKTSIM
305 KIAFIWMMAVFW-TIMPLIG-W-----SSYVPEGNLTACSIDYMT--RQWNPRSYLITYS
306 LFVYYTPLFMICYSYWFIIATVAAHEKAMRDQAKK-------------------------
307 --------------------------------------------------MN--------
308 --VKSL------------------------------------------------------
309 ----------RS-SEDCDKS------AENKLAKVALTTISLWFMAWTPYLIICYFGLF-K
310 I-D--GLTPLTTIWGATFAKTSAVYNPIVYGISHPNDRLVLKEKCPMCVC------GT-T
311 DEPK--PDAPPSDTETTSEA-ESKD-----------------------------------
312 ---------------------------------------------------------
313 > 25== U26026 1 Apis mellifera long-wavelength rhodopsin <>[]
314 --------------------------------MIAVSGPSYEA----------------F
315 SYGG--QARF-------NNQTVVDKVPPDMLH--------LIDANWYQYPPLNPMWHGIL
316 GFVIGMLGFVSAMGNGMVVYIFLSTKSLRTPSNLFVINLAISNFLMMFCM-SPPMVINCY
317 Y-ETWV--LGPLFCQIYAMLGSLFGCGSIWTMTMIAFDRYNVIVKGLSG-KPLSINGALI
318 RIIAIWLFSLGW-TIAPMFG-W-----NRYVPEGNMTACGTDYFN--RGLLSASYLVCYG
319 IWVYFVPLFLIIYSYWFIIQAVAAHEKNMREQAKK-------------------------
320 --------------------------------------------------MN--------
321 --VASL------------------------------------------------------
322 ----------RS-SENQNTS------AECKLAKVALMTISLWFMAWTPYLVINFSGIF-N
323 L-V--KISPLFTIWGSLFAKANAVYNPIVYGISHPKYRAALFAKFPSLAC-------A-A
324 EPSS--DAVSTTSGTTTVTD-NEKSNA---------------------------------
325 ---------------------------------------------------------
326 > 26== L03781 1 Limulus polyphemus opsin <>[PNAS90,6150-6154'93]
327 ----------------------------------MANQLSYSS----------------L
328 GWPY--QP----------NASVVDTMPKEMLY--------MIHEHWYAFPPMNPLWYSIL
329 GVAMIILGIICVLGNGMVIYLMMTTKSLRTPTNLLVVNLAFSDFCMMAFM-MPTMTSNCF
330 A-ETWI--LGPFMCEVYGMAGSLFGCASIWSMVMITLDRYNVIVRGMAA-APLTHKKATL
331 LLLFVWIWSGGW-TILPFFG-W-----SRYVPEGNLTSCTVDYLT--KDWSSASYVVIYG
332 LAVYFLPLITMIYCYFFIVHAVAEHEKQLREQAKK-------------------------
333 --------------------------------------------------MN--------
334 --VASL------------------------------------------------------
335 ----------RANADQQKQS------AECRLAKVAMMTVGLWFMAWTPYLIISWAGVF-S
336 SGT--RLTPLATIWGSVFAKANSCYNPIVYGISHPRYKAALYQRFPSLAC------GS-G
337 ESGS--DVKSEASATTTMEE-KPKIPEA--------------------------------
338 ---------------------------------------------------------
339 > 27== X07797 1 Octopus dofleini rhodopsin <>[FEBS232(1),69-72'88]
340 ---------------------------------------MVES----------------T
341 TLVN--QT-WWY------NPTVD------------------IHPHWAKFDPIPDAVYYSV
342 GIFIGVVGIIGILGNGVVIYLFSKTKSLQTPANMFIINLAMSDLSFSAINGFPLKTISAF
343 M-KKWI--FGKVACQLYGLLGGIFGFMSINTMAMISIDRYNVIGRPMAASKKMSHRRAFL
344 MIIFVWMWSIVW-SVGPVFN-W-----GAYVPEGILTSCSFDYLS--TDPSTRSFILCMY
345 FCGFMLPIIIIAFCYFNIVMSVSNHEKEMAAMAKR-------------------------
346 --------------------------------------------------LN--------
347 --AKEL------------------------------------------------------
348 ----------R--KAQAGAS------AEMKLAKISMVIITQFMLSWSPYAIIALLAQF-G
349 PAE--WVTPYAAELPVLFAKASAIHNPIVYSVSHPKFREAIQTTFPWLLTCCQFDEKE-C
350 EDAN--DAEEEVVASER--G-GESRDAAQMKEMMAMMQKMQAQQAAYQPPPPPQGY--PP
351 QGYPPQGAYPPPQGYPPQGYPPQGYPPQGYPPQGAPPQVEAPQGAPPQGVDNQAYQA
352 > 28== X70498 1 Todarodes pacificus rhodopsin <retina>[FEBS317(1-2),5-11'93]
353 ----------------------------------------MGR----------------D
354 LRDN--ET-WWY------NPSIV------------------VHPHWREFDQVPDAVYYSL
355 GIFIGICGIIGCGGNGIVIYLFTKTKSLQTPANMFIINLAFSDFTFSLVNGFPLMTISCF
356 L-KKWI--FGFAACKVYGFIGGIFGFMSIMTMAMISIDRYNVIGRPMAASKKMSHRRAFI
357 MIIFVWLWSVLW-AIGPIFG-W-----GAYTLEGVLCNCSFDYIS--RDSTTRSNILCMF
358 ILGFFGPILIIFFCYFNIVMSVSNHEKEMAAMAKR-------------------------
359 --------------------------------------------------LN--------
360 --AKEL------------------------------------------------------
361 ----------R--KAQAGAN------AEMRLAKISIVIVSQFLLSWSPYAVVALLAQF-G
362 PLE--WVTPYAAQLPVMFAKASAIHNPMIYSVSHPKFREAISQTFPWVLTCCQFDDKE-T
363 EDDK--DAETEIPAGESSDA-APSADAAQMKEMMAMMQKMQQQQAAY----PPQGYAPPP
364 QGYPPQGY--PPQGYPPQGYPPQGYPP---PPQGAPPQ-GAPPAAPPQGVDNQAYQA
365 > 29== L21195 1 human serotonin 5-HT7 receptor protein <placenta and fetal bra
366 ---------MMDVNSSGRPDLYGHLRSFL-LPEVGRGLPDLSPDGGA------------D
367 PVAGSWAPHLLS------EVTASPAPTWDAPPDNASGCGEQIN--------YGRVEKVVI
368 GSILTLITLLTIAGNCLVVISVCFVKKLRQPSNYLIVSLALADLSVAVAV-MPFVSVTDL
369 IGGKWI--FGHFFCNVFIAMDVMCCTASIMTLCVISIDRYLGITRPLTYPVRQNGKCMAK
370 MILSVWLLSASI-TLPPLFG-W-----AQNVNDDKVCLISQDF----------GYTIYST
371 AVAFYIPMSVMLFMYYQIY-------KAARKSAAKHKF----------------------
372 ---------------------------------PGFPRV----EPDSVIALNG-------
373 --IVKL----------------------QK---------EVEECAN--------------
374 ----LSRLLKHERKNISIFK------REQKAATTLGIIVGAFTVCWLPFFLLSTARPFIC
375 GTSCSCIPLWVERTFLWLGYANSLINPFIYAFFNRDLRTTYRSLLQCQYR----NINR--
376 ------KLSAAGMHEALKLAERPERPEF------------VLQNADY-------------
377 --------------------------------------------CRKKGHDS-----
378 > 30== L15228 1 rat 5HT-7 serotonin receptor <>[JBC268,18200-18204'93]
379 ------------------------------------------------------------
380 ------MPHLLS---GFLEVTASPAPTWDAPPDNVSGCGEQIN--------YGRVEKVVI
381 GSILTLITLLTIAGNCLVVISVSFVKKLRQPSNYLIVSLALADLSVAVAV-MPFVSVTDL
382 IGGKWI--FGHFFCNVFIAMDVMCCTASIMTLCVISIDRYLGITRPLTYPVRQNGKCMAK
383 MILSVWLLSASI-TLPPLFG-W-----AQNVNDDKVCLISQDF----------GYTIYST
384 AVAFYIPMSVMLFMYYQIY-------KAARKSAAKHKF----------------------
385 ---------------------------------PGFPRV----QPESVISLNG-------
386 --VVKL----------------------QK---------EVEECAN--------------
387 ----LSRLLKHERKNISIFK------REQKAATTLGIIVGAFTVCWLPFFLLSTARPFIC
388 GTSCSCIPLWVERTCLWLGYANSLINPFIYAFFNRDLRPTSRSLLQCQYR----NINR--
389 ------KLSAAGMHEALKLAERPERSEF------------VLQNSDH-------------
390 --------------------------------------------CGKKGHDT-----
391 > 31=p A47425 serotonin receptor 5HT-7 - rat
392 ------------------------------------------------------------
393 ------MPHLLS---GFLEVTASPAPTWDAPPDNVSGCGEQIN--------YGRVEKVVI
394 GSILTLITLLTIAGNCLVVISVSFVKKLRQPSNYLIVSLALADLSVAVAV-MPFVSVTDL
395 IGGKWI--FGHFFCNVFIAMDVMCCTASIMTLCVISIDRYLGITRPLTYPVRQNGKCMAK
396 MILSVWLLSASI-TLPPLFG-W-----AQNVNDDKVCLISQDF----------GYTIYST
397 AVAFYIPMSVMLFMYYQIY-------KAARKSAAKHKF----------------------
398 ---------------------------------PGFPRV----QPESVISLNG-------
399 --VVKL----------------------QK---------EVEECAN--------------
400 ----LSRLLKHERKNISIFK------REQKAATTLGIIVGAFTVCWLPFFLLSTARPFIC
401 GTSCSCIPLWVERTCLWLGYANSLINPFIYAFFNRDLRTTYRSLLQCQYR----NINR--
402 ------KLSAAGMHEALKLAERPERSEF------------VLQNSDH-------------
403 --------------------------------------------CGKKGHDT-----
404 > 32== M83181 1 human serotonin receptor <>[JBC267(11),7553-7562'92]
405 ----------MDVLSP--------------------------------------------
406 ---------------GQGNNTTSPPAPFET-GGNTTGISDVT---------VSYQ--VIT
407 SLLLGTLIFCAVLGNACVVAAIALERSLQNVANYLIGSLAVTDLMVSVLV-LPMAALYQV
408 L-NKWT--LGQVTCDLFIALDVLCCTSSILHLCAIALDRYWAITDPIDYVNKRTPRRAAA
409 LISLTWLIGFLI-SIPPMLG-WRTPEDRSDPD---ACTISKDH----------GYTIYST
410 FGAFYIPLLLMLVLYGRIF-------RAARFRIRK-------------------------
411 --------------TVKKVEKTGADTRHGASPAPQPKKS-----------VNGESGSR--
412 -------NWRLGVESKAGGALCANGAVRQGDDGAALEVIEVHRVGNSKEHLPLPSEAG--
413 PTPCAPASFERKNERNAEAKRKMALARERKTVKTLGIIMGTFILCWLPFFIVALVLPF-C
414 ESSC-HMPTLLGAIINWLGYSNSLLNPVIYAYFNKDFQNAFKKIIKCKFC----RQ----
415 ------------------------------------------------------------
416 ---------------------------------------------------------
417 > 33=p A35181 serotonin receptor class 1A - rat
418 ----------MDVFSF--------------------------------------------
419 ---------------GQGNNTTASQEPFGT-GGNVTSISDVT---------FSYQ--VIT
420 SLLLGTLIFCAVLGNACVVAAIALERSLQNVANYLIGSLAVTDLMVSVLV-LPMAALYQV
421 L-NKWT--LGQVTCDLFIALDVLCCTSSILHLCAIALDRYWAITDPIDYVNKRTPRRAAA
422 LISLTWLIGFLI-SIPPMLG-WRTPEDRSDPD---ACTISKDH----------GYTIYST
423 FGAFYIPLLLMLVLYGRIF-------RAARFRIRK-------------------------
424 --------------TVRKVEKKGAGTSLGTSSAPPPKKS-----------LNGQPGSG--
425 -------DWRRCAENRAVGTPCTNGAVRQGDDEATLEVIEVHRVGNSKEHLPLPSESG--
426 SNSYAPACLERKNERNAEAKRKMALARERKTVKTLGIIMGTFILCWLPFFIVALVLPF-C
427 ESSC-HMPALLGAIINWLGYSNSLLNPVIYAYFNKDFQNAFKKIIKCKFC----RR----
428 ------------------------------------------------------------
429 ---------------------------------------------------------
430 > 34== L06803 1 Lymnaea stagnalis serotonin receptor <>[PNAS90,11-15'93]
431 MANFTFGDLALDVARMG-----GLASTPSGLRSTGLTTPGLSPTGLV------------T
432 SDFN--DSYGLT---GQFINGSHSSRSRDNASANDTSATNMTDDRYWSLTVYSHEHLVLT
433 SVILGLFVLCCIIGNCFVIAAVMLERSLHNVANYLILSLAVADLMVAVLV-MPLSVVSEI
434 S-KVWF--LHSEVCDMWISVDVLCCTASILHLVAIAMDRYWAVTS-IDYIRRRSARRILL
435 MIMVVWIVALFI-SIPPLFG-WRDP--NNDPDKTGTCIISQDK----------GYTIFST
436 VGAFYLPMLVMMIIYIRIW-------LVARSRIRKDKFQMTKARLKTEETTLVASPKTEY
437 SVVSDCNGCNSPDSTTEKKKRRAPFKSYGCSPRPERKKNRAKKLPENANGVNSNSSS---
438 -------SERLKQIQIETAEAFANGCA----EEASIAMLERQ-CNNGKKISSNDTPYS--
439 -----------RTREKLELK------RERKAARTLAIITGAFLICWLPFFIIALIGPF-V
440 DPE--GIPPFARSFVLWLGYFNSLLNPIIYTIFSPEFRSAFQKILFGKYR----RGHR--
441 ------------------------------------------------------------
442 ---------------------------------------------------------
443 > 35=p A47174 serotonin receptor, 5HTlym receptor - great pond snail
444 MANFTFGDLALDVARMG-----GLASTPSGLRSTGLTTPGLSPTGLV------------T
445 SDFN--DSYGLT---GQFINGSHSSRSRDNASANDTSATNMTDDRYWSLTVYSHEHLVLT
446 SVILGLFVLCCIIGNCFVIAAVMLERSLHNVANYLILSLAVADLMVAVLV-MPLSVVSEI
447 S-KVWF--LHSEVCDMWISVDVLCCTASILHLVAIAMDRYWAVTS-IDYIRRRSARRILL
448 MIMVVWIVALFI-SIPPLFG-WRDP--NNDPDKTGTCIISQDK----------GYTIFST
449 VGAFYLPMLVMMIIYIRIW-------LVARSRIRKDKFQMTKARLKTEETTLVASPKTEY
450 SVVSDCNGCNSPDSTTEKKKRRAPFKSYGCSPRPERKKNRAKKLPENANGVNSNSSS---
451 -------SERLKQIQIETAEAFANGCA----EEASIAMLERQ-CNNGKKISSNDTPYS--
452 -----------RTREKLELK------RERKAARTLAIITGAFLICWLPFFIIALIGPF-V
453 DPE--GIPPFARSFVLWLGYFNSLLNPIIYTIFSPEFRSAFQKILFGKYR----RGHR--
454 ------------------------------------------------------------
455 ---------------------------------------------------------
456 > 36== X95604 1 Bombyx mori serotonin receptor <antennae>[InsectBiochem.Mol.Bi
457 -MEGAEGQEELDWEAL-------YLRLP--LQNCSWNSTGWEPNWNV------------T
458 VVPN--TTWW------------QASAPFDTPAALVRAAAK--------------------
459 AVVLGLLILATVVGNVFVIAAILLERHLRSAANNLILSLAVADLLVACLV-MPLGAVYEV
460 V-QRWT--LGPELCDMWTSGDVLCCTASILHLVAIALDRYWAVTN-IDYIHASTAKRVGM
461 MIACVWTVSFFV-CIAQLLG-WKDPDWNQRVSEDLRCVVSQDV----------GYQIFAT
462 ASSFYVPVLIILILYWRIY-------QTARKRIR--------------------------
463 -------------------RRRGATARGGVGPPP---------VPAGGALVAGGGSGGIA
464 AAVVAVIGRPLPTISETTTTGFTNVSS----NNTSP---EKQSCANGLEADPPTTGYGAV
465 AAAYYPSLVRRKPKEAADSK------RERKAAKTLAIITGAFVACWLPFFVLAILVPT-C
466 DCE---VSPVLTSLSLWLGYFNSTLNPVIYTVFSPEFRHAFQRLLCGRRV----RRRR--
467 ------A---------------PQ------------------------------------
468 ---------------------------------------------------------