diff test-data/mafft_explicit_amino_blosum80.clustal.aln @ 15:bf28a8cff401 draft

planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/mafft commit 2f6456c314c010fd73f5eeaf809a9afce47353af
author bgruening
date Wed, 20 Mar 2024 07:34:52 +0000
parents
children
line wrap: on
line diff
--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/test-data/mafft_explicit_amino_blosum80.clustal.aln	Wed Mar 20 07:34:52 2024 +0000
@@ -0,0 +1,458 @@
+CLUSTAL format alignment by MAFFT FFT-NS-2 (v7.520)
+
+
+1==             ----------------------------------------MN------------------
+2==             ----------------------------------------MN------------------
+3==             ----------------------------------------MN------------------
+4=p             ----------------------------------------MN------------------
+5=p             ----------------------------------------MN------------------
+6==             ----------------------------------------MK------------------
+7==             ----------------------------------------MR------------------
+8=opsin,        ------------------------------------------------------------
+9==             ----------------------------------------MAQQWSLQRLAGRHPQDS--
+10==            ----------------------------------------MAQQWSLQRLAGRHPQDS--
+11==            ----------------------------------------MTEAWNVAVFAARRSRDD--
+12==            ----------------------------------------MA-AWEAAFAARRRHEE---
+13==            ----------------------------------------MS------------------
+14==            ----------MESGNVS-------------SSLFGNVSTALR------------------
+15==            ----------MEYHNVS-------------SVL-GNVSSVLR------------------
+16==            ----------ME-------------------PLCNASEPPLR------------------
+17==            ----------MD-------------------ALCNASEPPLR------------------
+18==            --------------------------------MTNATGPQMA------------------
+19==            --------------------------------MANVTGPQMA------------------
+20==            ----------ME---SF-------------AVAAAQLGPHFA------------------
+21==            ----------ME---SF-------------AVAAAQLGPHFA------------------
+22==            ----------MD---SF-------------AAVATQLGPQFA------------------
+23==            -----MERSHLP---ET-------------PFDLAHSGPRFQ------------------
+24==            -----MERSLLP---EP-------------PLAMALLGPRFE------------------
+25==            --------------------------------MIAVSGPSYE------------------
+26==            ----------------------------------MANQLSYS------------------
+27==            ---------------------------------------MVE------------------
+28==            ----------------------------------------MG------------------
+29==            ---------MMDVNSSGRPDLYGHLRSFL-LPEVGRGLPDLSPDGGADPVAG-SWAPHLL
+30==            -------------------------------------------------------MPHLL
+31=p            -------------------------------------------------------MPHLL
+32==            ----------MDVLSP--------------------------------------------
+33=p            ----------MDVFSF--------------------------------------------
+34==            MANFTFGDLALDVARMG-----GLASTPSGLRSTGLTTPGLSPTGLVTSDFNDSYG---L
+35=p            MANFTFGDLALDVARMG-----GLASTPSGLRSTGLTTPGLSPTGLVTSDFNDSYG---L
+36==            -MEGAEGQEELDWEAL-------YLRLP--LQNCSWNSTGWEPNWNVTVVPNTTW-----
+                                                                            
+
+1==             -----GTE--GDN-FYVP----FSNKTGLARSPYEYPQY-YLAEPWK-----------YS
+2==             -----GTE--GPN-FYVP----FSNITGVVRSPFEQPQY-YLAEPWQ-----------FS
+3==             -----GTE--GIN-FYVP----MSNKTGVVRSPFEYPQY-YLAEPWK-----------YR
+4=p             -----GTE--GKN-FYVP----MSNRTGLVRSPFEYPQY-YLAEPWQ-----------FK
+5=p             -----GTE--GNN-FYVP----LSNRTGLVRSPFEYPQY-YLAEPWQ-----------FK
+6==             -----QVPEFHED-FYIPIPLDINNLSAY--SPFLVPQD-HLGNQGI-----------FM
+7==             -----KMS--EEE-FYL-----FKNISSV--GPWDGPQY-HIAPVWA-----------FY
+8=opsin,        ------------------------------------------------------------
+9==             ----YEDSTQSSI-FT------YTNSNST-RGPFEGPNY-HIAPRWV-----------YH
+10==            ----YEDSTQSSI-FT------YTNSNST-RGPFEGPNY-HIAPRWV-----------YH
+11==            -----DDTTRGSV-FT------YTNTNNT-RGPFEGPNY-HIAPRWV-----------YN
+12==            -----EDTTRDSV-FT------YTNSNNT-RGPFEGPNY-HIAPRWV-----------YN
+13==            -----SNSSQAP-------------PNGT-PGPFDGPQWPYQAPQST-----------YV
+14==            -----PEARLSA-----------ETRLLGWNVPPEELR--HIPEHWLT--YPEPPESMNY
+15==            -----PDARLSA-----------ESRLLGWNVPPDELR--HIPEHWLI--YPEPPESMNY
+16==            -----PEAR-SSG---N-----GDLQFLGWNVPPDQIQ--YIPEHWLT--QLEPPASMHY
+17==            -----PEARMSSG---S-----DELQFLGWNVPPDQIQ--YIPEHWLT--QLEPPASMHY
+18==            -----YYGAASMD-FGY-----PEGVSIVDFVRPEIKP--YVHQHWYN--YPPVNPMWHY
+19==            -----FYGSGAAT-FGY-----PEGMTVADFVPDRVKH--MVLDHWYN--YPPVNPMWHY
+20==            -----PLS----------------NGSVVDKVTPDMAH--LISPYWNQ--FPAMDPIWAK
+21==            -----PLS----------------NGSVVDKVTPDMAH--LISPYWNQ--FPAMDPIWAK
+22==            -----APS----------------NGSVVDKVTPDMAH--LISPYWDQ--FPAMDPIWAK
+23==            -----AQSSG--------------NGSVLDNVLPDMAH--LVNPYWSR--FAPMDPMMSK
+24==            -----AQTGG--------------NRSVLDNVLPDMAP--LVNPHWSR--FAPMDPTMSK
+25==            -----AFSYGGQARF--------NNQTVVDKVPPDMLH--LIDANWYQ--YPPLNPMWHG
+26==            -----SLGWPYQP-----------NASVVDTMPKEMLY--MIHEHWYA--FPPMNPLWYS
+27==            -----STTLVNQT-WWY-------NPTVD------------IHPHWAK--FDPIPDAVYY
+28==            -----RDLRDNET-WWY-------NPSIV------------VHPHWRE--FDQVPDAVYY
+29==            S---EVTASPAPT-WDAP----PDNASGCGEQIN----------------YGRVE---KV
+30==            SGFLEVTASPAPT-WDAP----PDNVSGCGEQIN----------------YGRVE---KV
+31=p            SGFLEVTASPAPT-WDAP----PDNVSGCGEQIN----------------YGRVE---KV
+32==            -GQGNNTTSPPAP-FET-----GGNTTGISDVT-----------------VSYQ-----V
+33=p            -GQGNNTTASQEP-FGT-----GGNVTSISDVT-----------------FSYQ-----V
+34==            TGQFINGSHSSRS-RDNA----SANDTSATNMTDD--------RYWSLTVYSHEH---LV
+35=p            TGQFINGSHSSRS-RDNA----SANDTSATNMTDD--------RYWSLTVYSHEH---LV
+36==            -------WQASAP-FDTP----AALVRAAAK-----------------------------
+                                                                            
+
+1==             ALAAYMFFLILVGFPVNFLTLFVTVQHKKLRTPLNYILLNLAMANLFMVLFG-FTVTMYT
+2==             MLAAYMFLLIVLGFPINFLTLYVTVQHKKLRTPLNYILLNLAVADLFMVFGG-FTTTLYT
+3==             LVCCYIFFLISTGLPINLLTLLVTFKHKKLRQPLNYILVNLAVADLFMACFG-FTVTFYT
+4=p             ILALYLFFLMSMGLPINGLTLVVTAQHKKLRQPLNFILVNLAVAGTIMVCFG-FTVTFYT
+5=p             LLAVYMFFLICLGLPINGLTLICTAQHKKLRQPLNFILVNLAVAGAIMVCFG-FTVTFYT
+6==             AMSVFMFFIFIGGASINILTILCTIQFKKLRSHLNYILVNLSIANLFVAIFG-SPLSFYS
+7==             LQAAFMGTVFLIGFPLNAMVLVATLRYKKLRQPLNYILVNVSFGGFLLCIFS-VFPVFVA
+8=opsin,        --------------------------------------------DLAETVIA-STISIVN
+9==             LTSVWMIFVVIASVFTNGLVLAATMKFKKLRHPLNWILVNLAVADLAETVIA-STISVVN
+10==            LTSVWMIFVVTASVFTNGLVLAATMKFKKLRHPLNWILVNLAVADLAETVIA-STISIVN
+11==            LVSFFMIIVVIASCFTNGLVLVATAKFKKLRHPLNWILVNLAFVDLVETLVA-STISVFN
+12==            LTSVWMIFVVAASVFTNGLVLVATWKFKKLRHPLNWILVNLAVADLGETVIA-STISVIN
+13==            GVAVLMGTVVACASVVNGLVIVVSICYKKLRSPLNYILVNLAVADLLVTLCG-SSVSLSN
+14==            LLGTLYIFFTLMSMLGNGLVIWVFSAAKSLRTPSNILVINLAFCDFMMMVK--TPIFIYN
+15==            LLGTLYIFFTVISMIGNGLVMWVFSAAKSLRTPSNILVINLAFCDFMMMIK--TPIFIYN
+16==            MLGVFYIFLFCASTVGNGMVIWIFSTSKSLRTPSNMFVLNLAVFDLIMCLK--APIF--N
+17==            MLGVFYIFLFFASTLGNGMVIWIFSTSKSLRTPSNMFVLNLAVFDLIMCLK--APIFIYN
+18==            LLGVIYLFLGTVSIFGNGLVIYLFNKSAALRTPANILVVNLALSDLIMLTTN-VPFFTYN
+19==            LLGVVYLFLGVISIAGNGLVIYLYMKSQALKTPANMLIVNLALSDLIMLTTN-FPPFCYN
+20==            ILTAYMIMIGMISWCGNGVVIYIFATTKSLRTPANLLVINLAISDFGIMITN-TPMMGIN
+21==            ILTAYMIMIGMISWCGNGVVIYIFATTKSLRTPANLLVINLAISDFGIMITN-TPMMGIN
+22==            ILTAYMIIIGMISWCGNGVVIYIFATTKSLRTPANLLVINLAISDFGIMITN-TPMMGIN
+23==            ILGLFTLAIMIISCCGNGVVVYIFGGTKSLRTPANLLVLNLAFSDFCMMASQ-SPVMIIN
+24==            ILGLFTLVILIISCCGNGVVVYIFGGTKSLRTPANLLVLNLAFSDFCMMASQ-SPVMIIN
+25==            ILGFVIGMLGFVSAMGNGMVVYIFLSTKSLRTPSNLFVINLAISNFLMMFCM-SPPMVIN
+26==            ILGVAMIILGIICVLGNGMVIYLMMTTKSLRTPTNLLVVNLAFSDFCMMAFM-MPTMTSN
+27==            SVGIFIGVVGIIGILGNGVVIYLFSKTKSLQTPANMFIINLAMSDLSFSAINGFPLKTIS
+28==            SLGIFIGICGIIGCGGNGIVIYLFTKTKSLQTPANMFIINLAFSDFTFSLVNGFPLMTIS
+29==            VIGSILTLITLLTIAGNCLVVISVCFVKKLRQPSNYLIVSLALADLSVAVAV-MPFVSVT
+30==            VIGSILTLITLLTIAGNCLVVISVSFVKKLRQPSNYLIVSLALADLSVAVAV-MPFVSVT
+31=p            VIGSILTLITLLTIAGNCLVVISVSFVKKLRQPSNYLIVSLALADLSVAVAV-MPFVSVT
+32==            ITSLLLGTLIFCAVLGNACVVAAIALERSLQNVANYLIGSLAVTDLMVSVLV-LPMAALY
+33=p            ITSLLLGTLIFCAVLGNACVVAAIALERSLQNVANYLIGSLAVTDLMVSVLV-LPMAALY
+34==            LTSVILGLFVLCCIIGNCFVIAAVMLERSLHNVANYLILSLAVADLMVAVLV-MPLSVVS
+35=p            LTSVILGLFVLCCIIGNCFVIAAVMLERSLHNVANYLILSLAVADLMVAVLV-MPLSVVS
+36==            --AVVLGLLILATVVGNVFVIAAILLERHLRSAANNLILSLAVADLLVACLV-MPLGAVY
+                                                            .               
+
+1==             SMN-GYFV--FGPTMCSIEGFFATLGGEVALWSLVVLAIERYIVICKPMGN-FRFGNTHA
+2==             SLH-GYFV--FGPTGCNLEGFFATLGGEIGLWSLVVLAIERYVVVCKPMSN-FRFGENHA
+3==             AWN-GYFV--FGPVGCAVEGFFATLGGQVALWSLVVLAIERYIVVCKPMGN-FRFSATHA
+4=p             AIN-GYFV--LGPTGCAVEGFMATLGGEVALWSLVVLAIERYIVVCKPMGS-FKFSSSHA
+5=p             AIN-GYFA--LGPTGCAVEGFMATLGGEVALWSLVVLAIERYIVVCKPMGS-FKFSSTHA
+6==             FFN-RYFI--FGATACKIEGFLATLGGMVGLWSLAVVAFERWLVICKPLGN-FTFKTPHA
+7==             SCN-GYFV--FGRHVCALEGFLGTVAGLVTGWSLAFLAFERYIVICKPFGN-FRFSSKHA
+8=opsin,        QVS-GYFV--LGHPMCVLEGYTVSLCGITGLWSLAIISWERWLVVCKPFGN-VRFDAKLA
+9==             QVY-GYFV--LGHPMCVLEGYTVSLCGITGLWSLAIISWERWMVVCKPFGN-VRFDAKLA
+10==            QVS-GYFV--LGHPMCVLEGYTVSLCGITGLWSLAIISWERWLVVCKPFGN-VRFDAKLA
+11==            QIF-GYFI--LGHPLCVIEGYVVSSCGITGLWSLAIISWERWFVVCKPFGN-IKFDSKLA
+12==            QIS-GYFI--LGHPMCVVEGYTVSACGITALWSLAIISWERWFVVCKPFGN-IKFDGKLA
+13==            NIN-GFFV--FGRRMCELEGFMVSLTGIVGLWSLAILALERYVVVCKPLGD-FQFQRRHA
+14==            SFH-QGYA--LGHLGCQIFGIIGSYTGIAAGATNAFIAYDRFNVITRPMEG--KMTHGKA
+15==            SFH-QGYA--LGHLGCQIFGVIGSYTGIAAGATNAFIAYDRYNVITRPMEG--KMTHGKA
+16==            SFH-RGFAIYLGNTWCQIFASIGSYSGIGAGMTNAAIGYDRYNVITKPMNR--NMTFTKA
+17==            SFH-RGFA--LGNTWCQIFASIGSYSGIGAGMTNAAIGYDRYNVITKPMNR--NMTFTKA
+18==            CFSGGVWM--FSPQYCEIYACLGAITGVCSIWLLCMISFDRYNIICNGFNG-PKLTTGKA
+19==            CFSGGRWM--FSGTYCEIYAALGAITGVCSIWTLCMISFDRYNIICNGFNG-PKLTQGKA
+20==            LYF-ETWV--LGPMMCDIYAGLGSAFGCSSIWSMCMISLDRYQVIVKGMAG-RPMTIPLA
+21==            LYF-ETWV--LGPMMCDIYAGLGSAFGCSSIWSMCMISLDRYQVIVKGMAG-RPMTIPLA
+22==            LYF-ETWV--LGPMMCDIYAGLGSAFGCSSIWSMCMISLDRYQVIVKGMAG-RPMTIPLA
+23==            FYY-ETWV--LGPLWCDIYAGCGSLFGCVSIWSMCMIAFDRYNVIVKGING-TPMTIKTS
+24==            FYY-ETWV--LGPLWCDIYAACGSLFGCVSIWSMCMIAFDRYNVIVKGING-TPMTIKTS
+25==            CYY-ETWV--LGPLFCQIYAMLGSLFGCGSIWTMTMIAFDRYNVIVKGLSG-KPLSINGA
+26==            CFA-ETWI--LGPFMCEVYGMAGSLFGCASIWSMVMITLDRYNVIVRGMAA-APLTHKKA
+27==            AFM-KKWI--FGKVACQLYGLLGGIFGFMSINTMAMISIDRYNVIGRPMAASKKMSHRRA
+28==            CFL-KKWI--FGFAACKVYGFIGGIFGFMSIMTMAMISIDRYNVIGRPMAASKKMSHRRA
+29==            DLIGGKWI--FGHFFCNVFIAMDVMCCTASIMTLCVISIDRYLGITRPLTYPVRQNGKCM
+30==            DLIGGKWI--FGHFFCNVFIAMDVMCCTASIMTLCVISIDRYLGITRPLTYPVRQNGKCM
+31=p            DLIGGKWI--FGHFFCNVFIAMDVMCCTASIMTLCVISIDRYLGITRPLTYPVRQNGKCM
+32==            QVL-NKWT--LGQVTCDLFIALDVLCCTSSILHLCAIALDRYWAITDPIDYVNKRTPRRA
+33=p            QVL-NKWT--LGQVTCDLFIALDVLCCTSSILHLCAIALDRYWAITDPIDYVNKRTPRRA
+34==            EIS-KVWF--LHSEVCDMWISVDVLCCTASILHLVAIAMDRYWAVTS-IDYIRRRSARRI
+35=p            EIS-KVWF--LHSEVCDMWISVDVLCCTASILHLVAIAMDRYWAVTS-IDYIRRRSARRI
+36==            EVV-QRWT--LGPELCDMWTSGDVLCCTASILHLVAIALDRYWAVTN-IDYIHASTAKRV
+                      :   :    * :                  :  :*:  :   :           
+
+1==             IMGVAFTWIMALAC-AAPPLVG-W-----SRYIPEGMQCSCGPDYYTLNPNFNNESYVVY
+2==             IMGVAFTWVMALAC-AAPPLVG-W-----SRYIPEGMQCSCGIDYYTLKPEVNNESFVIY
+3==             MMGIAFTWVMAFSC-AAPPLFG-W-----SRYMPEGMQCSCGPDYYTHNPDYHNESYVLY
+4=p             FAGIAFTWVMALAC-AAPPLFG-W-----SRYIPEGMQCSCGPDYYTLNPDYNNESYVIY
+5=p             SAGIAFTWVMAMAC-AAPPLVG-W-----SRYIPEGIQCSCGPDYYTLNPEYNNESYVLY
+6==             IAGCILPWISALAA-SLPPLFG-W-----SRYIPEGLQCSCGPDWYTTNNKYNNESYVMF
+7==             LTVVLATWTIGIGV-SIPPFFG-W-----SRFIPEGLQCSCGPDWYTVGTKYRSESYTWF
+8=opsin,        IVGIAFSWIWAAVW-TAPPIFG-W-----SRYWPHGLKTSCGPDVFSGSSYPGVQSYMIV
+9==             IVGIAFSWIWAAVW-TAPPIFG-W-----SRYWPHGLKTSCGPDVFSGSSYPGVQSYMIV
+10==            IVGIAFSWIWSAVW-TAPPIFG-W-----SRYWPHGLKTSCGPDVFSGSSYPGVQSYMIV
+11==            IIGIVFSWVWAWGW-SAPPIFG-W-----SRYWPHGLKTSCGPDVFSGSVELGCQSFMLT
+12==            VAGILFSWLWSCAW-TAPPIFG-W-----SRYWPHGLKTSCGPDVFSGSSDPGVQSYMVV
+13==            VSGCAFTWGWALLW-SAPPLLG-W-----SSYVPEGLRTSCGPNWYTGGSNN--NSYILS
+14==            IAMIIFIYMYATPW-VVACYTETW-----GRFVPEGYLTSCTFDYLT--DNFDTRLFVAC
+15==            IAMIIFIYLYATPW-VVACYTESW-----GRFVPEGYLTSCTFDYLT--DNFDTRLFVAC
+16==            VIMNIIIWLYCTPW-VVLPLTQFW-----DRFVPEGYLTSCSFDYLS--DNFDTRLFVGT
+17==            VIMNIIIWLYCTPW-VVLPLTQFW-----DRFVPEGYLTSCSFDYLS--DNFDTRLFVGT
+18==            VVFALISWVIAIGC-ALPPFFG-W-----GNYILEGILDSCSYDYLT--QDFNTFSYNIF
+19==            TFMCGLAWVISVGW-SLPPFFG-W-----GSYTLEGILDSCSYDYFT--RDMNTITYNIC
+20==            LGKM---------------------------YVPEGNLTSCGIDYLE--RDWNPRSYLIF
+21==            LGKIAYIWFMSSIW-CLAPAFG-W-----SRYVPEGNLTSCGIDYLE--RDWNPRSYLIF
+22==            LGKIAYIWFMSTIWCCLAPVFG-W-----SRYVPEGNLTSCGIDYLE--RDWNPRSYLIF
+23==            IMKILFIWMMAVFW-TVMPLIG-W-----SAYVPEGNLTACSIDYMT--RMWNPRSYLIT
+24==            IMKIAFIWMMAVFW-TIMPLIG-W-----SSYVPEGNLTACSIDYMT--RQWNPRSYLIT
+25==            LIRIIAIWLFSLGW-TIAPMFG-W-----NRYVPEGNMTACGTDYFN--RGLLSASYLVC
+26==            TLLLLFVWIWSGGW-TILPFFG-W-----SRYVPEGNLTSCTVDYLT--KDWSSASYVVI
+27==            FLMIIFVWMWSIVW-SVGPVFN-W-----GAYVPEGILTSCSFDYLS--TDPSTRSFILC
+28==            FIMIIFVWLWSVLW-AIGPIFG-W-----GAYTLEGVLCNCSFDYIS--RDSTTRSNILC
+29==            AKMILSVWLLSASI-TLPPLFG-W-----AQNVNDDKVCLISQDF----------GYTIY
+30==            AKMILSVWLLSASI-TLPPLFG-W-----AQNVNDDKVCLISQDF----------GYTIY
+31=p            AKMILSVWLLSASI-TLPPLFG-W-----AQNVNDDKVCLISQDF----------GYTIY
+32==            AALISLTWLIGFLI-SIPPMLG-WRTPEDRSDPD---ACTISKDH----------GYTIY
+33=p            AALISLTWLIGFLI-SIPPMLG-WRTPEDRSDPD---ACTISKDH----------GYTIY
+34==            LLMIMVVWIVALFI-SIPPLFG-WRDP--NNDPDKTGTCIISQDK----------GYTIF
+35=p            LLMIMVVWIVALFI-SIPPLFG-WRDP--NNDPDKTGTCIISQDK----------GYTIF
+36==            GMMIACVWTVSFFV-CIAQLLG-WKDPDWNQRVSEDLRCVVSQDV----------GYQIF
+                                                           :                
+
+1==             MFVVHFLVPFVIIFFCYGRLLCTV----KE------------------------------
+2==             MFVVHFTIPMIVIFFCYGQLVFTV----KE------------------------------
+3==             MFVIHFIIPVVVIFFSYGRLICKV----RE------------------------------
+4=p             MFVCHFILPVAVIFFTYGRLVCTV----KA------------------------------
+5=p             MFICHFILPVTIIFFTYGRLVCTV----KA------------------------------
+6==             LFCFCFAVPFGTIVFCYGQLLITL----KL------------------------------
+7==             LFIFCFIVPLSLICFSYTQLLRAL----KA------------------------------
+8=opsin,        LMVTCCITPLSIIVLCYLQVWLAI----RA------------------------------
+9==             LMVTCCITPLSIIVLCYLQVWLAI----RA------------------------------
+10==            LMVTCCIIPLAIIMLCYLQVWLAI----RA------------------------------
+11==            LMITCCFLPLFIIIVCYLQVWMAI----RA------------------------------
+12==            LMVTCCFFPLAIIILCYLQVWLAI----RA------------------------------
+13==            LFVTCFVLPLSLILFSYTNLLLTL----RA------------------------------
+14==            IFFFSFVCPTTMITYYYSQIVGHVFSHEKA------------------------------
+15==            IFFFSFVCPTTMITYYYSQIVGHVFSHEKA------------------------------
+16==            IFFFSFVCPTLMILYYYSQIVGHVFSHEKA------------------------------
+17==            IFLFSFVVPTLMILYYYSQIVGHVFNHEKA------------------------------
+18==            IFVFDYFLPAAIIVFSYVFIVKAIFAHEAA------------------------------
+19==            IFIFDFFLPASVIVFSYVFIVKAIFAHEAA------------------------------
+20==            YSIFVYYIPLFLICYSYWFIIAAVSAHEKA------------------------------
+21==            YSIFVYYIPLFLICYSYWFIIAAVSAHEKA------------------------------
+22==            YSIFVYYIPLFLICYSYWFIIAAVSAHEKA------------------------------
+23==            YSLFVYYTPLFLICYSYWFIIAAVAAHEKA------------------------------
+24==            YSLFVYYTPLFMICYSYWFIIATVAAHEKA------------------------------
+25==            YGIWVYFVPLFLIIYSYWFIIQAVAAHEKN------------------------------
+26==            YGLAVYFLPLITMIYCYFFIVHAVAEHEKQ------------------------------
+27==            MYFCGFMLPIIIIAFCYFNIVMSVSNHEKE------------------------------
+28==            MFILGFFGPILIIFFCYFNIVMSVSNHEKE------------------------------
+29==            STAVAFYIPMSVMLFMYYQIYKAARKSAAKHKF-----------------PGF-------
+30==            STAVAFYIPMSVMLFMYYQIYKAARKSAAKHKF-----------------PGF-------
+31=p            STAVAFYIPMSVMLFMYYQIYKAARKSAAKHKF-----------------PGF-------
+32==            STFGAFYIPLLLMLVLYGRIFRAARFRIRK------------------------------
+33=p            STFGAFYIPLLLMLVLYGRIFRAARFRIRK------------------------------
+34==            STVGAFYLPMLVMMIIYIRIWLVARSRIRKDKFQMTKARLKTEETTLVASPKTEYSVVSD
+35=p            STVGAFYLPMLVMMIIYIRIWLVARSRIRKDKFQMTKARLKTEETTLVASPKTEYSVVSD
+36==            ATASSFYVPVLIILILYWRIYQTARKRIR-------------------------------
+                        *   :   *  :                                        
+
+1==             --------------------------AAAAQQ----------------------------
+2==             --------------------------AAAQQQ----------------------------
+3==             --------------------------AAAQQQ----------------------------
+4=p             --------------------------AAAQQQ----------------------------
+5=p             --------------------------AAAQQQ----------------------------
+6==             --------------------------AAKAQA----------------------------
+7==             --------------------------VAAQQQ----------------------------
+8=opsin,        --------------------------VAKQQK----------------------------
+9==             --------------------------VAKQQK----------------------------
+10==            --------------------------VAKQQK----------------------------
+11==            --------------------------VAAQQK----------------------------
+12==            --------------------------VAAQQK----------------------------
+13==            --------------------------AAAQQK----------------------------
+14==            --------------------------LRDQAKKM----------------------NVES
+15==            --------------------------LRDQAKKM----------------------NVDS
+16==            --------------------------LREQAKKM----------------------NVES
+17==            --------------------------LREQAKKM----------------------NVES
+18==            --------------------------MRAQAKKM----------------------NVST
+19==            --------------------------MRAQAKKM----------------------NVTN
+20==            --------------------------MREQAKKM----------------------NVKS
+21==            --------------------------MREQAKKM----------------------NVKS
+22==            --------------------------MREQAKKM----------------------NVKS
+23==            --------------------------MREQAKKM----------------------NVKS
+24==            --------------------------MRDQAKKM----------------------NVKS
+25==            --------------------------MREQAKKM----------------------NVAS
+26==            --------------------------LREQAKKM----------------------NVAS
+27==            --------------------------MAAMAKRL----------------------NAKE
+28==            --------------------------MAAMAKRL----------------------NAKE
+29==            --------------------------PRVEPD------------------------SVIA
+30==            --------------------------PRVQPE------------------------SVIS
+31=p            --------------------------PRVQPE------------------------SVIS
+32==            ---------TVKKVEKTGADTRHGASPAPQPKKS-----------VNGESGSR-------
+33=p            ---------TVRKVEKKGAGTSLGTSSAPPPKKS-----------LNGQPGSG-------
+34==            CNGCNSPDSTTEKKKRRAPFKSYGCSPRPERKKNRAKKLPENANGVNSNSSS--------
+35=p            CNGCNSPDSTTEKKKRRAPFKSYGCSPRPERKKNRAKKLPENANGVNSNSSS--------
+36==            --------------RRRGATARGGVGPPP---------VPAGGALVAGGGSGGIAAAVVA
+                                                                            
+
+1==             ------------------------------------------------------------
+2==             ------------------------------------------------------------
+3==             ------------------------------------------------------------
+4=p             ------------------------------------------------------------
+5=p             ------------------------------------------------------------
+6==             ------------------------------------------------------------
+7==             ------------------------------------------------------------
+8=opsin,        ------------------------------------------------------------
+9==             ------------------------------------------------------------
+10==            ------------------------------------------------------------
+11==            ------------------------------------------------------------
+12==            ------------------------------------------------------------
+13==            ------------------------------------------------------------
+14==            L-----------------------------------------------------------
+15==            L-----------------------------------------------------------
+16==            L-----------------------------------------------------------
+17==            L-----------------------------------------------------------
+18==            L-----------------------------------------------------------
+19==            L-----------------------------------------------------------
+20==            L-----------------------------------------------------------
+21==            L-----------------------------------------------------------
+22==            L-----------------------------------------------------------
+23==            L-----------------------------------------------------------
+24==            L-----------------------------------------------------------
+25==            L-----------------------------------------------------------
+26==            L-----------------------------------------------------------
+27==            L-----------------------------------------------------------
+28==            L-----------------------------------------------------------
+29==            L-----------------NGIVKLQ--------KEVEECAN------------------L
+30==            L-----------------NGVVKLQ--------KEVEECAN------------------L
+31=p            L-----------------NGVVKLQ--------KEVEECAN------------------L
+32==            --NWRLGVESKAGGALCANGAVRQGDDGAALEVIEVHRVGNSKEHLPLPSEAGPTPCA--
+33=p            --DWRRCAENRAVGTPCTNGAVRQGDDEATLEVIEVHRVGNSKEHLPLPSESGSNSYA--
+34==            --SERLKQIQIETAEAFANGCA----EEASIAMLERQ-CNNGKKISSNDTPYS-------
+35=p            --SERLKQIQIETAEAFANGCA----EEASIAMLERQ-CNNGKKISSNDTPYS-------
+36==            VIGRPLPTISETTTTGFTNVSS----NNTS---PEKQSCANGLEADPPTTGYGAVAAAYY
+                                                                            
+
+1==             --------ESASTQK------AEKEVTRMVVLMVIGFLVCWVPYASVAFYIFT-HQGS--
+2==             --------ESATTQK------AEKEVTRMVIIMVIFFLICWLPYASVAMYIFT-HQGS--
+3==             --------ESATTQK------AEKEVTRMVILMVLGFMLAWTPYAVVAFWIFT-NKGA--
+4=p             --------DSASTQK------AEREVTKMVILMVFGFLIAWTPYATVAAWIFF-NKGA--
+5=p             --------DSASTQK------AEREVTKMVILMVLGFLVAWTPYATVAAWIFF-NKGA--
+6==             --------DSASTQK------AEREVTKMVVVMVLGFLVCWAPYASFSLWIVS-HRGE--
+7==             --------ESATTQK------AEREVSRMVVVMVGSFCVCYVPYAAFAMYMVN-NRNH--
+8=opsin,        --------ESESTQK------AEKEVTRMVVVMVLAFC----------------------
+9==             --------ESESTQK------AEKEVTRMVVVMVLAFCFCWGPYAFFACFAAA-NPGY--
+10==            --------ESESTQK------AEKEVTRMVVVMIFAYCVCWGPYTFFACFAAA-NPGY--
+11==            --------ESESTQK------AEREVSRMVVVMIVAFCICWGPYASFVSFAAA-NPGY--
+12==            --------ESESTQK------AEKEVSRMVVVMIVAYCFCWGPYTFFACFAAA-NPGY--
+13==            --------EADTTQR------AEREVTRMVIVMVMAFLLCWLPYSTFALVVAT-HKGI--
+14==            -----RSNVDKNKET------AEIRIAKAAITICFLFFCSWTPYGVMSLIGAF-GDKT--
+15==            -----RSNVDKSKEA------AEIRIAKAAITICFLFFASWTPYGVMSLIGAF-GDKT--
+16==            -----RSNVDKSKET------AEIRIAKAAITICFLFFVSWTPYGVMSLIGAF-GDKS--
+17==            -----RSNVDKSKET------AEIRIAKAAITICFLFFVSWTPYGVMSLIGAF-GDKS--
+18==            -----RS-NEADAQR------AEIRIAKTALVNVSLWFICWTPYALISLKGVM-GDTS--
+19==            -----RS-NEAETQR------AEIRIAKTALVNVSLWFICWTPYAAITIQGLL-GNAE--
+20==            -----RS-SEDAEKS------AEGKLAKVALVTITLWFMAWTPYLVINCMGLF-KF-E--
+21==            -----RS-SEDAEKS------AEGKLAKVALVTITLWFMAWTPYLVINCMGLF-KF-E--
+22==            -----RS-SEDADKS------AEGKLAKVALVTISLWFMAWTPYLVINCMGLF-KF-E--
+23==            -----RS-SEDCDKS------AEGKLAKVALTTISLWFMAWTPYLVICYFGLF-KI-D--
+24==            -----RS-SEDCDKS------AENKLAKVALTTISLWFMAWTPYLIICYFGLF-KI-D--
+25==            -----RS-SENQNTS------AECKLAKVALMTISLWFMAWTPYLVINFSGIF-NL-V--
+26==            -----RANADQQKQS------AECRLAKVAMMTVGLWFMAWTPYLIISWAGVF-SSGT--
+27==            -----R--KAQAGAS------AEMKLAKISMVIITQFMLSWSPYAIIALLAQF-GPAE--
+28==            -----R--KAQAGAN------AEMRLAKISIVIVSQFLLSWSPYAVVALLAQF-GPLE--
+29==            SRLLKHERKNISIFK------REQKAATTLGIIVGAFTVCWLPFFLLSTARPFICGTSCS
+30==            SRLLKHERKNISIFK------REQKAATTLGIIVGAFTVCWLPFFLLSTARPFICGTSCS
+31=p            SRLLKHERKNISIFK------REQKAATTLGIIVGAFTVCWLPFFLLSTARPFICGTSCS
+32==            PASFERKNERNAEAKRKMALARERKTVKTLGIIMGTFILCWLPFFIVALVLPF-CESSC-
+33=p            PACLERKNERNAEAKRKMALARERKTVKTLGIIMGTFILCWLPFFIVALVLPF-CESSC-
+34==            ------RTREKLELK------RERKAARTLAIITGAFLICWLPFFIIALIGPF-VDPE--
+35=p            ------RTREKLELK------RERKAARTLAIITGAFLICWLPFFIIALIGPF-VDPE--
+36==            PSLVRRKPKEAADSK------RERKAAKTLAIITGAFVACWLPFFVLAILVPT-CDCE--
+                                      * .           :                       
+
+1==             DFGATFMTLPAFFAKSSALYNPVIYILMNKQFRNCMITTLCC--------GKNPLGDDE-
+2==             NFGPIFMTLPAFFAKTASIYNPIIYIMMNKQFRNCMLTSLCC--------GKNPLGDDE-
+3==             DFTATLMAVPAFFSKSSSLYNPIIYVLMNKQFRNCMITTICC--------GKNPFGDEDV
+4=p             DFSAKFMAIPAFFSKSSALYNPVIYVLLNKQFRNCMLTTIFC--------GKNPLGDDE-
+5=p             AFSAQFMAIPAFFSKTSALYNPVIYVLLNKQFRSCMLTTLFC--------GKNPLGDEE-
+6==             EFDLRMATIPSCLSKASTVYNPVIYVLMNKQFRSCMMKMV-C--------GKN-IEEDE-
+7==             GLDLRLVTIPSFFSKSACIYNPIIYCFMNKQFQACIMKMV-C--------GKA-MTDES-
+8=opsin,        ------------------------------------------------------------
+9==             PFHPLMAALPAFFAKSATIYNPVIYVFMNRQFRNCILQLF----------GKK-VDDGS-
+10==            AFHPLMAALPAYFAKSATIYNPVIYVFMNRQFRNCILQLF----------GKK-VDDGS-
+11==            AFHPLAAALPAYFAKSATIYNPVIYVFMNRQFRNCIMQLF----------GKK-VDDGS-
+12==            AFHPLAAALPAYFAKSATIYNPIIYVFMNRQFRNCILQLF----------GKK-VDDGS-
+13==            IIQPVLASLPSYFSKTATVYNPIIYVFMNKQFQSCLLEMLCCG-----YQPQR-TGKAS-
+14==            LLTPGATMIPACACKMVACIDPFVYAISHPRYRMELQKRCPWLAL---------NEKAP-
+15==            LLTPGATMIPACTCKMVACIDPFVYAISHPRYRMELQKRCPWLAI---------SEKAP-
+16==            LLTQGATMIPACTCKLVACIDPFVYAISHPRYRLELQKRCPWLGV---------NEKSG-
+17==            LLTPGATMIPACTCKLVACIEPFVYAISHPRYRMELQKRCPWLGV---------NEKSG-
+18==            GITPLVSTLPALLAKSCSCYNPFVYAISHPKYRLAITQHLPWFCV------HE-TETKS-
+19==            GITPLLTTLPALLAKSCSCYNPFVYAISHPKFRLAITQHLPWFCV------HE-KDPND-
+20==            GLTPLNTIWGACFAKSAACYNPIVYGISHPKYRLALKEKCPCCVF------GK-VDDGK-
+21==            GLTPLNTIWGACFAKSAACYNPIVYGISHPKYRLALKEKCPCCVF------GK-VDDGK-
+22==            GLTPLNTIWGACFAKSAACYNPIVYGISHPKYRLALKEKCPCCVF------GK-VDDGK-
+23==            GLTPLTTIWGATFAKTSAVYNPIVYGISHPKYRIVLKEKCPMCVF------GN-TDEPK-
+24==            GLTPLTTIWGATFAKTSAVYNPIVYGISHPNDRLVLKEKCPMCVC------GT-TDEPK-
+25==            KISPLFTIWGSLFAKANAVYNPIVYGISHPKYRAALFAKFPSLAC-------A-AEPSS-
+26==            RLTPLATIWGSVFAKANSCYNPIVYGISHPRYKAALYQRFPSLAC------GS-GESGS-
+27==            WVTPYAAELPVLFAKASAIHNPIVYSVSHPKFREAIQTTFPWLLTCCQFDEKE-CEDAN-
+28==            WVTPYAAQLPVMFAKASAIHNPMIYSVSHPKFREAISQTFPWVLTCCQFDDKE-TEDDK-
+29==            CIPLWVERTFLWLGYANSLINPFIYAFFNRDLRTTYRSLLQCQYR---------------
+30==            CIPLWVERTCLWLGYANSLINPFIYAFFNRDLRPTSRSLLQCQYR---------------
+31=p            CIPLWVERTCLWLGYANSLINPFIYAFFNRDLRTTYRSLLQCQYR---------------
+32==            HMPTLLGAIINWLGYSNSLLNPVIYAYFNKDFQNAFKKIIKCKFC---------------
+33=p            HMPALLGAIINWLGYSNSLLNPVIYAYFNKDFQNAFKKIIKCKFC---------------
+34==            GIPPFARSFVLWLGYFNSLLNPIIYTIFSPEFRSAFQKILFGKYR---------------
+35=p            GIPPFARSFVLWLGYFNSLLNPIIYTIFSPEFRSAFQKILFGKYR---------------
+36==            -VSPVLTSLSLWLGYFNSTLNPVIYTVFSPEFRHAFQRLLCGRRV---------------
+                                                                            
+
+1==             -SGASTSKTEVSSVS-TSPVSPA-------------------------------------
+2==             -ASATASKTE------TSQVAPA-------------------------------------
+3==             SSTVSQSKTEVSSVS-SSQVSPA-------------------------------------
+4=p             SSTVSTSKTEVSS------VSPA-------------------------------------
+5=p             SSTVSTSKTEVSS------VSPA-------------------------------------
+6==             -ASTSSQVTQVSS------VAPEK------------------------------------
+7==             -DTCSSQKTEVSTVS-STQVGPN-------------------------------------
+8=opsin,        ------------------------------------------------------------
+9==             -ELSSASKTEVSSV---SSVSPA-------------------------------------
+10==            -ELSSASKTEVSSV---SSVSPA-------------------------------------
+11==            -EASTTSRTEVSSVS-NSSVAPA-------------------------------------
+12==            -EVST-SRTEVSSVS-NSSVSPA-------------------------------------
+13==            -PGTPGPHADVTAAGLRNKVMPAHPV----------------------------------
+14==            -ESSAVASTSTTQEP--QQTTAA-------------------------------------
+15==            -ESRAAISTSTTQEQ--QQTTAA-------------------------------------
+16==            -EISSAQST-TTQEQ--QQTTAA-------------------------------------
+17==            -EASSAQST-TTQEQ-TQQTSAA-------------------------------------
+18==            -NDDSQSNSTVAQDK-A-------------------------------------------
+19==            -VEENQSSNTQTQEK-S-------------------------------------------
+20==            -SSDAQSQA-TASEA-ESKA----------------------------------------
+21==            -SSDAQSQA-TASEA-ESKA----------------------------------------
+22==            -SSEAQSQA-TTSEA-ESKA----------------------------------------
+23==            -PDAPASDTETTSEA-DSKA----------------------------------------
+24==            -PDAPPSDTETTSEA-ESKD----------------------------------------
+25==            -DAVSTTSGTTTVTD-NEKSNA--------------------------------------
+26==            -DVKSEASATTTMEE-KPKIPEA-------------------------------------
+27==            -DAEEEVVASER--G-GESRDAAQMKEMMAMMQKMQAQQAAYQPPPPPQGY--PPQGYPP
+28==            -DAETEIPAGESSDA-APSADAAQMKEMMAMMQKMQQQQAAY----PPQGYAPPPQGYPP
+29==            -NINRKLSAAGMHEALKLAERPERPEFVL--------QNADY------------------
+30==            -NINRKLSAAGMHEALKLAERPERSEFVL--------QNSDH------------------
+31=p            -NINRKLSAAGMHEALKLAERPERSEFVL--------QNSDH------------------
+32==            -RQ---------------------------------------------------------
+33=p            -RR---------------------------------------------------------
+34==            -RGHR-------------------------------------------------------
+35=p            -RGHR-------------------------------------------------------
+36==            -RRRRA---------------PQ-------------------------------------
+                                                                            
+
+1==             ----------------------------------------------------
+2==             ----------------------------------------------------
+3==             ----------------------------------------------------
+4=p             ----------------------------------------------------
+5=p             ----------------------------------------------------
+6==             ----------------------------------------------------
+7==             ----------------------------------------------------
+8=opsin,        ----------------------------------------------------
+9==             ----------------------------------------------------
+10==            ----------------------------------------------------
+11==            ----------------------------------------------------
+12==            ----------------------------------------------------
+13==            ----------------------------------------------------
+14==            ----------------------------------------------------
+15==            ----------------------------------------------------
+16==            ----------------------------------------------------
+17==            ----------------------------------------------------
+18==            ----------------------------------------------------
+19==            ----------------------------------------------------
+20==            ----------------------------------------------------
+21==            ----------------------------------------------------
+22==            ----------------------------------------------------
+23==            ----------------------------------------------------
+24==            ----------------------------------------------------
+25==            ----------------------------------------------------
+26==            ----------------------------------------------------
+27==            QGAYPPPQGYPPQGYPPQGYPPQGYPPQGAPPQVEAPQGAPPQGVDNQAYQA
+28==            QGY--PPQGYPPQGYPPQGYPP---PPQGAPPQ-GAPPAAPPQGVDNQAYQA
+29==            ---------------------------------------CRKKGHDS-----
+30==            ---------------------------------------CGKKGHDT-----
+31=p            ---------------------------------------CGKKGHDT-----
+32==            ----------------------------------------------------
+33=p            ----------------------------------------------------
+34==            ----------------------------------------------------
+35=p            ----------------------------------------------------
+36==            ----------------------------------------------------
+