view test-data/mafft_explicit_amino_blosum80.clustal.aln @ 15:bf28a8cff401 draft

planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/mafft commit 2f6456c314c010fd73f5eeaf809a9afce47353af
author bgruening
date Wed, 20 Mar 2024 07:34:52 +0000
parents
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CLUSTAL format alignment by MAFFT FFT-NS-2 (v7.520)


1==             ----------------------------------------MN------------------
2==             ----------------------------------------MN------------------
3==             ----------------------------------------MN------------------
4=p             ----------------------------------------MN------------------
5=p             ----------------------------------------MN------------------
6==             ----------------------------------------MK------------------
7==             ----------------------------------------MR------------------
8=opsin,        ------------------------------------------------------------
9==             ----------------------------------------MAQQWSLQRLAGRHPQDS--
10==            ----------------------------------------MAQQWSLQRLAGRHPQDS--
11==            ----------------------------------------MTEAWNVAVFAARRSRDD--
12==            ----------------------------------------MA-AWEAAFAARRRHEE---
13==            ----------------------------------------MS------------------
14==            ----------MESGNVS-------------SSLFGNVSTALR------------------
15==            ----------MEYHNVS-------------SVL-GNVSSVLR------------------
16==            ----------ME-------------------PLCNASEPPLR------------------
17==            ----------MD-------------------ALCNASEPPLR------------------
18==            --------------------------------MTNATGPQMA------------------
19==            --------------------------------MANVTGPQMA------------------
20==            ----------ME---SF-------------AVAAAQLGPHFA------------------
21==            ----------ME---SF-------------AVAAAQLGPHFA------------------
22==            ----------MD---SF-------------AAVATQLGPQFA------------------
23==            -----MERSHLP---ET-------------PFDLAHSGPRFQ------------------
24==            -----MERSLLP---EP-------------PLAMALLGPRFE------------------
25==            --------------------------------MIAVSGPSYE------------------
26==            ----------------------------------MANQLSYS------------------
27==            ---------------------------------------MVE------------------
28==            ----------------------------------------MG------------------
29==            ---------MMDVNSSGRPDLYGHLRSFL-LPEVGRGLPDLSPDGGADPVAG-SWAPHLL
30==            -------------------------------------------------------MPHLL
31=p            -------------------------------------------------------MPHLL
32==            ----------MDVLSP--------------------------------------------
33=p            ----------MDVFSF--------------------------------------------
34==            MANFTFGDLALDVARMG-----GLASTPSGLRSTGLTTPGLSPTGLVTSDFNDSYG---L
35=p            MANFTFGDLALDVARMG-----GLASTPSGLRSTGLTTPGLSPTGLVTSDFNDSYG---L
36==            -MEGAEGQEELDWEAL-------YLRLP--LQNCSWNSTGWEPNWNVTVVPNTTW-----
                                                                            

1==             -----GTE--GDN-FYVP----FSNKTGLARSPYEYPQY-YLAEPWK-----------YS
2==             -----GTE--GPN-FYVP----FSNITGVVRSPFEQPQY-YLAEPWQ-----------FS
3==             -----GTE--GIN-FYVP----MSNKTGVVRSPFEYPQY-YLAEPWK-----------YR
4=p             -----GTE--GKN-FYVP----MSNRTGLVRSPFEYPQY-YLAEPWQ-----------FK
5=p             -----GTE--GNN-FYVP----LSNRTGLVRSPFEYPQY-YLAEPWQ-----------FK
6==             -----QVPEFHED-FYIPIPLDINNLSAY--SPFLVPQD-HLGNQGI-----------FM
7==             -----KMS--EEE-FYL-----FKNISSV--GPWDGPQY-HIAPVWA-----------FY
8=opsin,        ------------------------------------------------------------
9==             ----YEDSTQSSI-FT------YTNSNST-RGPFEGPNY-HIAPRWV-----------YH
10==            ----YEDSTQSSI-FT------YTNSNST-RGPFEGPNY-HIAPRWV-----------YH
11==            -----DDTTRGSV-FT------YTNTNNT-RGPFEGPNY-HIAPRWV-----------YN
12==            -----EDTTRDSV-FT------YTNSNNT-RGPFEGPNY-HIAPRWV-----------YN
13==            -----SNSSQAP-------------PNGT-PGPFDGPQWPYQAPQST-----------YV
14==            -----PEARLSA-----------ETRLLGWNVPPEELR--HIPEHWLT--YPEPPESMNY
15==            -----PDARLSA-----------ESRLLGWNVPPDELR--HIPEHWLI--YPEPPESMNY
16==            -----PEAR-SSG---N-----GDLQFLGWNVPPDQIQ--YIPEHWLT--QLEPPASMHY
17==            -----PEARMSSG---S-----DELQFLGWNVPPDQIQ--YIPEHWLT--QLEPPASMHY
18==            -----YYGAASMD-FGY-----PEGVSIVDFVRPEIKP--YVHQHWYN--YPPVNPMWHY
19==            -----FYGSGAAT-FGY-----PEGMTVADFVPDRVKH--MVLDHWYN--YPPVNPMWHY
20==            -----PLS----------------NGSVVDKVTPDMAH--LISPYWNQ--FPAMDPIWAK
21==            -----PLS----------------NGSVVDKVTPDMAH--LISPYWNQ--FPAMDPIWAK
22==            -----APS----------------NGSVVDKVTPDMAH--LISPYWDQ--FPAMDPIWAK
23==            -----AQSSG--------------NGSVLDNVLPDMAH--LVNPYWSR--FAPMDPMMSK
24==            -----AQTGG--------------NRSVLDNVLPDMAP--LVNPHWSR--FAPMDPTMSK
25==            -----AFSYGGQARF--------NNQTVVDKVPPDMLH--LIDANWYQ--YPPLNPMWHG
26==            -----SLGWPYQP-----------NASVVDTMPKEMLY--MIHEHWYA--FPPMNPLWYS
27==            -----STTLVNQT-WWY-------NPTVD------------IHPHWAK--FDPIPDAVYY
28==            -----RDLRDNET-WWY-------NPSIV------------VHPHWRE--FDQVPDAVYY
29==            S---EVTASPAPT-WDAP----PDNASGCGEQIN----------------YGRVE---KV
30==            SGFLEVTASPAPT-WDAP----PDNVSGCGEQIN----------------YGRVE---KV
31=p            SGFLEVTASPAPT-WDAP----PDNVSGCGEQIN----------------YGRVE---KV
32==            -GQGNNTTSPPAP-FET-----GGNTTGISDVT-----------------VSYQ-----V
33=p            -GQGNNTTASQEP-FGT-----GGNVTSISDVT-----------------FSYQ-----V
34==            TGQFINGSHSSRS-RDNA----SANDTSATNMTDD--------RYWSLTVYSHEH---LV
35=p            TGQFINGSHSSRS-RDNA----SANDTSATNMTDD--------RYWSLTVYSHEH---LV
36==            -------WQASAP-FDTP----AALVRAAAK-----------------------------
                                                                            

1==             ALAAYMFFLILVGFPVNFLTLFVTVQHKKLRTPLNYILLNLAMANLFMVLFG-FTVTMYT
2==             MLAAYMFLLIVLGFPINFLTLYVTVQHKKLRTPLNYILLNLAVADLFMVFGG-FTTTLYT
3==             LVCCYIFFLISTGLPINLLTLLVTFKHKKLRQPLNYILVNLAVADLFMACFG-FTVTFYT
4=p             ILALYLFFLMSMGLPINGLTLVVTAQHKKLRQPLNFILVNLAVAGTIMVCFG-FTVTFYT
5=p             LLAVYMFFLICLGLPINGLTLICTAQHKKLRQPLNFILVNLAVAGAIMVCFG-FTVTFYT
6==             AMSVFMFFIFIGGASINILTILCTIQFKKLRSHLNYILVNLSIANLFVAIFG-SPLSFYS
7==             LQAAFMGTVFLIGFPLNAMVLVATLRYKKLRQPLNYILVNVSFGGFLLCIFS-VFPVFVA
8=opsin,        --------------------------------------------DLAETVIA-STISIVN
9==             LTSVWMIFVVIASVFTNGLVLAATMKFKKLRHPLNWILVNLAVADLAETVIA-STISVVN
10==            LTSVWMIFVVTASVFTNGLVLAATMKFKKLRHPLNWILVNLAVADLAETVIA-STISIVN
11==            LVSFFMIIVVIASCFTNGLVLVATAKFKKLRHPLNWILVNLAFVDLVETLVA-STISVFN
12==            LTSVWMIFVVAASVFTNGLVLVATWKFKKLRHPLNWILVNLAVADLGETVIA-STISVIN
13==            GVAVLMGTVVACASVVNGLVIVVSICYKKLRSPLNYILVNLAVADLLVTLCG-SSVSLSN
14==            LLGTLYIFFTLMSMLGNGLVIWVFSAAKSLRTPSNILVINLAFCDFMMMVK--TPIFIYN
15==            LLGTLYIFFTVISMIGNGLVMWVFSAAKSLRTPSNILVINLAFCDFMMMIK--TPIFIYN
16==            MLGVFYIFLFCASTVGNGMVIWIFSTSKSLRTPSNMFVLNLAVFDLIMCLK--APIF--N
17==            MLGVFYIFLFFASTLGNGMVIWIFSTSKSLRTPSNMFVLNLAVFDLIMCLK--APIFIYN
18==            LLGVIYLFLGTVSIFGNGLVIYLFNKSAALRTPANILVVNLALSDLIMLTTN-VPFFTYN
19==            LLGVVYLFLGVISIAGNGLVIYLYMKSQALKTPANMLIVNLALSDLIMLTTN-FPPFCYN
20==            ILTAYMIMIGMISWCGNGVVIYIFATTKSLRTPANLLVINLAISDFGIMITN-TPMMGIN
21==            ILTAYMIMIGMISWCGNGVVIYIFATTKSLRTPANLLVINLAISDFGIMITN-TPMMGIN
22==            ILTAYMIIIGMISWCGNGVVIYIFATTKSLRTPANLLVINLAISDFGIMITN-TPMMGIN
23==            ILGLFTLAIMIISCCGNGVVVYIFGGTKSLRTPANLLVLNLAFSDFCMMASQ-SPVMIIN
24==            ILGLFTLVILIISCCGNGVVVYIFGGTKSLRTPANLLVLNLAFSDFCMMASQ-SPVMIIN
25==            ILGFVIGMLGFVSAMGNGMVVYIFLSTKSLRTPSNLFVINLAISNFLMMFCM-SPPMVIN
26==            ILGVAMIILGIICVLGNGMVIYLMMTTKSLRTPTNLLVVNLAFSDFCMMAFM-MPTMTSN
27==            SVGIFIGVVGIIGILGNGVVIYLFSKTKSLQTPANMFIINLAMSDLSFSAINGFPLKTIS
28==            SLGIFIGICGIIGCGGNGIVIYLFTKTKSLQTPANMFIINLAFSDFTFSLVNGFPLMTIS
29==            VIGSILTLITLLTIAGNCLVVISVCFVKKLRQPSNYLIVSLALADLSVAVAV-MPFVSVT
30==            VIGSILTLITLLTIAGNCLVVISVSFVKKLRQPSNYLIVSLALADLSVAVAV-MPFVSVT
31=p            VIGSILTLITLLTIAGNCLVVISVSFVKKLRQPSNYLIVSLALADLSVAVAV-MPFVSVT
32==            ITSLLLGTLIFCAVLGNACVVAAIALERSLQNVANYLIGSLAVTDLMVSVLV-LPMAALY
33=p            ITSLLLGTLIFCAVLGNACVVAAIALERSLQNVANYLIGSLAVTDLMVSVLV-LPMAALY
34==            LTSVILGLFVLCCIIGNCFVIAAVMLERSLHNVANYLILSLAVADLMVAVLV-MPLSVVS
35=p            LTSVILGLFVLCCIIGNCFVIAAVMLERSLHNVANYLILSLAVADLMVAVLV-MPLSVVS
36==            --AVVLGLLILATVVGNVFVIAAILLERHLRSAANNLILSLAVADLLVACLV-MPLGAVY
                                                            .               

1==             SMN-GYFV--FGPTMCSIEGFFATLGGEVALWSLVVLAIERYIVICKPMGN-FRFGNTHA
2==             SLH-GYFV--FGPTGCNLEGFFATLGGEIGLWSLVVLAIERYVVVCKPMSN-FRFGENHA
3==             AWN-GYFV--FGPVGCAVEGFFATLGGQVALWSLVVLAIERYIVVCKPMGN-FRFSATHA
4=p             AIN-GYFV--LGPTGCAVEGFMATLGGEVALWSLVVLAIERYIVVCKPMGS-FKFSSSHA
5=p             AIN-GYFA--LGPTGCAVEGFMATLGGEVALWSLVVLAIERYIVVCKPMGS-FKFSSTHA
6==             FFN-RYFI--FGATACKIEGFLATLGGMVGLWSLAVVAFERWLVICKPLGN-FTFKTPHA
7==             SCN-GYFV--FGRHVCALEGFLGTVAGLVTGWSLAFLAFERYIVICKPFGN-FRFSSKHA
8=opsin,        QVS-GYFV--LGHPMCVLEGYTVSLCGITGLWSLAIISWERWLVVCKPFGN-VRFDAKLA
9==             QVY-GYFV--LGHPMCVLEGYTVSLCGITGLWSLAIISWERWMVVCKPFGN-VRFDAKLA
10==            QVS-GYFV--LGHPMCVLEGYTVSLCGITGLWSLAIISWERWLVVCKPFGN-VRFDAKLA
11==            QIF-GYFI--LGHPLCVIEGYVVSSCGITGLWSLAIISWERWFVVCKPFGN-IKFDSKLA
12==            QIS-GYFI--LGHPMCVVEGYTVSACGITALWSLAIISWERWFVVCKPFGN-IKFDGKLA
13==            NIN-GFFV--FGRRMCELEGFMVSLTGIVGLWSLAILALERYVVVCKPLGD-FQFQRRHA
14==            SFH-QGYA--LGHLGCQIFGIIGSYTGIAAGATNAFIAYDRFNVITRPMEG--KMTHGKA
15==            SFH-QGYA--LGHLGCQIFGVIGSYTGIAAGATNAFIAYDRYNVITRPMEG--KMTHGKA
16==            SFH-RGFAIYLGNTWCQIFASIGSYSGIGAGMTNAAIGYDRYNVITKPMNR--NMTFTKA
17==            SFH-RGFA--LGNTWCQIFASIGSYSGIGAGMTNAAIGYDRYNVITKPMNR--NMTFTKA
18==            CFSGGVWM--FSPQYCEIYACLGAITGVCSIWLLCMISFDRYNIICNGFNG-PKLTTGKA
19==            CFSGGRWM--FSGTYCEIYAALGAITGVCSIWTLCMISFDRYNIICNGFNG-PKLTQGKA
20==            LYF-ETWV--LGPMMCDIYAGLGSAFGCSSIWSMCMISLDRYQVIVKGMAG-RPMTIPLA
21==            LYF-ETWV--LGPMMCDIYAGLGSAFGCSSIWSMCMISLDRYQVIVKGMAG-RPMTIPLA
22==            LYF-ETWV--LGPMMCDIYAGLGSAFGCSSIWSMCMISLDRYQVIVKGMAG-RPMTIPLA
23==            FYY-ETWV--LGPLWCDIYAGCGSLFGCVSIWSMCMIAFDRYNVIVKGING-TPMTIKTS
24==            FYY-ETWV--LGPLWCDIYAACGSLFGCVSIWSMCMIAFDRYNVIVKGING-TPMTIKTS
25==            CYY-ETWV--LGPLFCQIYAMLGSLFGCGSIWTMTMIAFDRYNVIVKGLSG-KPLSINGA
26==            CFA-ETWI--LGPFMCEVYGMAGSLFGCASIWSMVMITLDRYNVIVRGMAA-APLTHKKA
27==            AFM-KKWI--FGKVACQLYGLLGGIFGFMSINTMAMISIDRYNVIGRPMAASKKMSHRRA
28==            CFL-KKWI--FGFAACKVYGFIGGIFGFMSIMTMAMISIDRYNVIGRPMAASKKMSHRRA
29==            DLIGGKWI--FGHFFCNVFIAMDVMCCTASIMTLCVISIDRYLGITRPLTYPVRQNGKCM
30==            DLIGGKWI--FGHFFCNVFIAMDVMCCTASIMTLCVISIDRYLGITRPLTYPVRQNGKCM
31=p            DLIGGKWI--FGHFFCNVFIAMDVMCCTASIMTLCVISIDRYLGITRPLTYPVRQNGKCM
32==            QVL-NKWT--LGQVTCDLFIALDVLCCTSSILHLCAIALDRYWAITDPIDYVNKRTPRRA
33=p            QVL-NKWT--LGQVTCDLFIALDVLCCTSSILHLCAIALDRYWAITDPIDYVNKRTPRRA
34==            EIS-KVWF--LHSEVCDMWISVDVLCCTASILHLVAIAMDRYWAVTS-IDYIRRRSARRI
35=p            EIS-KVWF--LHSEVCDMWISVDVLCCTASILHLVAIAMDRYWAVTS-IDYIRRRSARRI
36==            EVV-QRWT--LGPELCDMWTSGDVLCCTASILHLVAIALDRYWAVTN-IDYIHASTAKRV
                      :   :    * :                  :  :*:  :   :           

1==             IMGVAFTWIMALAC-AAPPLVG-W-----SRYIPEGMQCSCGPDYYTLNPNFNNESYVVY
2==             IMGVAFTWVMALAC-AAPPLVG-W-----SRYIPEGMQCSCGIDYYTLKPEVNNESFVIY
3==             MMGIAFTWVMAFSC-AAPPLFG-W-----SRYMPEGMQCSCGPDYYTHNPDYHNESYVLY
4=p             FAGIAFTWVMALAC-AAPPLFG-W-----SRYIPEGMQCSCGPDYYTLNPDYNNESYVIY
5=p             SAGIAFTWVMAMAC-AAPPLVG-W-----SRYIPEGIQCSCGPDYYTLNPEYNNESYVLY
6==             IAGCILPWISALAA-SLPPLFG-W-----SRYIPEGLQCSCGPDWYTTNNKYNNESYVMF
7==             LTVVLATWTIGIGV-SIPPFFG-W-----SRFIPEGLQCSCGPDWYTVGTKYRSESYTWF
8=opsin,        IVGIAFSWIWAAVW-TAPPIFG-W-----SRYWPHGLKTSCGPDVFSGSSYPGVQSYMIV
9==             IVGIAFSWIWAAVW-TAPPIFG-W-----SRYWPHGLKTSCGPDVFSGSSYPGVQSYMIV
10==            IVGIAFSWIWSAVW-TAPPIFG-W-----SRYWPHGLKTSCGPDVFSGSSYPGVQSYMIV
11==            IIGIVFSWVWAWGW-SAPPIFG-W-----SRYWPHGLKTSCGPDVFSGSVELGCQSFMLT
12==            VAGILFSWLWSCAW-TAPPIFG-W-----SRYWPHGLKTSCGPDVFSGSSDPGVQSYMVV
13==            VSGCAFTWGWALLW-SAPPLLG-W-----SSYVPEGLRTSCGPNWYTGGSNN--NSYILS
14==            IAMIIFIYMYATPW-VVACYTETW-----GRFVPEGYLTSCTFDYLT--DNFDTRLFVAC
15==            IAMIIFIYLYATPW-VVACYTESW-----GRFVPEGYLTSCTFDYLT--DNFDTRLFVAC
16==            VIMNIIIWLYCTPW-VVLPLTQFW-----DRFVPEGYLTSCSFDYLS--DNFDTRLFVGT
17==            VIMNIIIWLYCTPW-VVLPLTQFW-----DRFVPEGYLTSCSFDYLS--DNFDTRLFVGT
18==            VVFALISWVIAIGC-ALPPFFG-W-----GNYILEGILDSCSYDYLT--QDFNTFSYNIF
19==            TFMCGLAWVISVGW-SLPPFFG-W-----GSYTLEGILDSCSYDYFT--RDMNTITYNIC
20==            LGKM---------------------------YVPEGNLTSCGIDYLE--RDWNPRSYLIF
21==            LGKIAYIWFMSSIW-CLAPAFG-W-----SRYVPEGNLTSCGIDYLE--RDWNPRSYLIF
22==            LGKIAYIWFMSTIWCCLAPVFG-W-----SRYVPEGNLTSCGIDYLE--RDWNPRSYLIF
23==            IMKILFIWMMAVFW-TVMPLIG-W-----SAYVPEGNLTACSIDYMT--RMWNPRSYLIT
24==            IMKIAFIWMMAVFW-TIMPLIG-W-----SSYVPEGNLTACSIDYMT--RQWNPRSYLIT
25==            LIRIIAIWLFSLGW-TIAPMFG-W-----NRYVPEGNMTACGTDYFN--RGLLSASYLVC
26==            TLLLLFVWIWSGGW-TILPFFG-W-----SRYVPEGNLTSCTVDYLT--KDWSSASYVVI
27==            FLMIIFVWMWSIVW-SVGPVFN-W-----GAYVPEGILTSCSFDYLS--TDPSTRSFILC
28==            FIMIIFVWLWSVLW-AIGPIFG-W-----GAYTLEGVLCNCSFDYIS--RDSTTRSNILC
29==            AKMILSVWLLSASI-TLPPLFG-W-----AQNVNDDKVCLISQDF----------GYTIY
30==            AKMILSVWLLSASI-TLPPLFG-W-----AQNVNDDKVCLISQDF----------GYTIY
31=p            AKMILSVWLLSASI-TLPPLFG-W-----AQNVNDDKVCLISQDF----------GYTIY
32==            AALISLTWLIGFLI-SIPPMLG-WRTPEDRSDPD---ACTISKDH----------GYTIY
33=p            AALISLTWLIGFLI-SIPPMLG-WRTPEDRSDPD---ACTISKDH----------GYTIY
34==            LLMIMVVWIVALFI-SIPPLFG-WRDP--NNDPDKTGTCIISQDK----------GYTIF
35=p            LLMIMVVWIVALFI-SIPPLFG-WRDP--NNDPDKTGTCIISQDK----------GYTIF
36==            GMMIACVWTVSFFV-CIAQLLG-WKDPDWNQRVSEDLRCVVSQDV----------GYQIF
                                                           :                

1==             MFVVHFLVPFVIIFFCYGRLLCTV----KE------------------------------
2==             MFVVHFTIPMIVIFFCYGQLVFTV----KE------------------------------
3==             MFVIHFIIPVVVIFFSYGRLICKV----RE------------------------------
4=p             MFVCHFILPVAVIFFTYGRLVCTV----KA------------------------------
5=p             MFICHFILPVTIIFFTYGRLVCTV----KA------------------------------
6==             LFCFCFAVPFGTIVFCYGQLLITL----KL------------------------------
7==             LFIFCFIVPLSLICFSYTQLLRAL----KA------------------------------
8=opsin,        LMVTCCITPLSIIVLCYLQVWLAI----RA------------------------------
9==             LMVTCCITPLSIIVLCYLQVWLAI----RA------------------------------
10==            LMVTCCIIPLAIIMLCYLQVWLAI----RA------------------------------
11==            LMITCCFLPLFIIIVCYLQVWMAI----RA------------------------------
12==            LMVTCCFFPLAIIILCYLQVWLAI----RA------------------------------
13==            LFVTCFVLPLSLILFSYTNLLLTL----RA------------------------------
14==            IFFFSFVCPTTMITYYYSQIVGHVFSHEKA------------------------------
15==            IFFFSFVCPTTMITYYYSQIVGHVFSHEKA------------------------------
16==            IFFFSFVCPTLMILYYYSQIVGHVFSHEKA------------------------------
17==            IFLFSFVVPTLMILYYYSQIVGHVFNHEKA------------------------------
18==            IFVFDYFLPAAIIVFSYVFIVKAIFAHEAA------------------------------
19==            IFIFDFFLPASVIVFSYVFIVKAIFAHEAA------------------------------
20==            YSIFVYYIPLFLICYSYWFIIAAVSAHEKA------------------------------
21==            YSIFVYYIPLFLICYSYWFIIAAVSAHEKA------------------------------
22==            YSIFVYYIPLFLICYSYWFIIAAVSAHEKA------------------------------
23==            YSLFVYYTPLFLICYSYWFIIAAVAAHEKA------------------------------
24==            YSLFVYYTPLFMICYSYWFIIATVAAHEKA------------------------------
25==            YGIWVYFVPLFLIIYSYWFIIQAVAAHEKN------------------------------
26==            YGLAVYFLPLITMIYCYFFIVHAVAEHEKQ------------------------------
27==            MYFCGFMLPIIIIAFCYFNIVMSVSNHEKE------------------------------
28==            MFILGFFGPILIIFFCYFNIVMSVSNHEKE------------------------------
29==            STAVAFYIPMSVMLFMYYQIYKAARKSAAKHKF-----------------PGF-------
30==            STAVAFYIPMSVMLFMYYQIYKAARKSAAKHKF-----------------PGF-------
31=p            STAVAFYIPMSVMLFMYYQIYKAARKSAAKHKF-----------------PGF-------
32==            STFGAFYIPLLLMLVLYGRIFRAARFRIRK------------------------------
33=p            STFGAFYIPLLLMLVLYGRIFRAARFRIRK------------------------------
34==            STVGAFYLPMLVMMIIYIRIWLVARSRIRKDKFQMTKARLKTEETTLVASPKTEYSVVSD
35=p            STVGAFYLPMLVMMIIYIRIWLVARSRIRKDKFQMTKARLKTEETTLVASPKTEYSVVSD
36==            ATASSFYVPVLIILILYWRIYQTARKRIR-------------------------------
                        *   :   *  :                                        

1==             --------------------------AAAAQQ----------------------------
2==             --------------------------AAAQQQ----------------------------
3==             --------------------------AAAQQQ----------------------------
4=p             --------------------------AAAQQQ----------------------------
5=p             --------------------------AAAQQQ----------------------------
6==             --------------------------AAKAQA----------------------------
7==             --------------------------VAAQQQ----------------------------
8=opsin,        --------------------------VAKQQK----------------------------
9==             --------------------------VAKQQK----------------------------
10==            --------------------------VAKQQK----------------------------
11==            --------------------------VAAQQK----------------------------
12==            --------------------------VAAQQK----------------------------
13==            --------------------------AAAQQK----------------------------
14==            --------------------------LRDQAKKM----------------------NVES
15==            --------------------------LRDQAKKM----------------------NVDS
16==            --------------------------LREQAKKM----------------------NVES
17==            --------------------------LREQAKKM----------------------NVES
18==            --------------------------MRAQAKKM----------------------NVST
19==            --------------------------MRAQAKKM----------------------NVTN
20==            --------------------------MREQAKKM----------------------NVKS
21==            --------------------------MREQAKKM----------------------NVKS
22==            --------------------------MREQAKKM----------------------NVKS
23==            --------------------------MREQAKKM----------------------NVKS
24==            --------------------------MRDQAKKM----------------------NVKS
25==            --------------------------MREQAKKM----------------------NVAS
26==            --------------------------LREQAKKM----------------------NVAS
27==            --------------------------MAAMAKRL----------------------NAKE
28==            --------------------------MAAMAKRL----------------------NAKE
29==            --------------------------PRVEPD------------------------SVIA
30==            --------------------------PRVQPE------------------------SVIS
31=p            --------------------------PRVQPE------------------------SVIS
32==            ---------TVKKVEKTGADTRHGASPAPQPKKS-----------VNGESGSR-------
33=p            ---------TVRKVEKKGAGTSLGTSSAPPPKKS-----------LNGQPGSG-------
34==            CNGCNSPDSTTEKKKRRAPFKSYGCSPRPERKKNRAKKLPENANGVNSNSSS--------
35=p            CNGCNSPDSTTEKKKRRAPFKSYGCSPRPERKKNRAKKLPENANGVNSNSSS--------
36==            --------------RRRGATARGGVGPPP---------VPAGGALVAGGGSGGIAAAVVA
                                                                            

1==             ------------------------------------------------------------
2==             ------------------------------------------------------------
3==             ------------------------------------------------------------
4=p             ------------------------------------------------------------
5=p             ------------------------------------------------------------
6==             ------------------------------------------------------------
7==             ------------------------------------------------------------
8=opsin,        ------------------------------------------------------------
9==             ------------------------------------------------------------
10==            ------------------------------------------------------------
11==            ------------------------------------------------------------
12==            ------------------------------------------------------------
13==            ------------------------------------------------------------
14==            L-----------------------------------------------------------
15==            L-----------------------------------------------------------
16==            L-----------------------------------------------------------
17==            L-----------------------------------------------------------
18==            L-----------------------------------------------------------
19==            L-----------------------------------------------------------
20==            L-----------------------------------------------------------
21==            L-----------------------------------------------------------
22==            L-----------------------------------------------------------
23==            L-----------------------------------------------------------
24==            L-----------------------------------------------------------
25==            L-----------------------------------------------------------
26==            L-----------------------------------------------------------
27==            L-----------------------------------------------------------
28==            L-----------------------------------------------------------
29==            L-----------------NGIVKLQ--------KEVEECAN------------------L
30==            L-----------------NGVVKLQ--------KEVEECAN------------------L
31=p            L-----------------NGVVKLQ--------KEVEECAN------------------L
32==            --NWRLGVESKAGGALCANGAVRQGDDGAALEVIEVHRVGNSKEHLPLPSEAGPTPCA--
33=p            --DWRRCAENRAVGTPCTNGAVRQGDDEATLEVIEVHRVGNSKEHLPLPSESGSNSYA--
34==            --SERLKQIQIETAEAFANGCA----EEASIAMLERQ-CNNGKKISSNDTPYS-------
35=p            --SERLKQIQIETAEAFANGCA----EEASIAMLERQ-CNNGKKISSNDTPYS-------
36==            VIGRPLPTISETTTTGFTNVSS----NNTS---PEKQSCANGLEADPPTTGYGAVAAAYY
                                                                            

1==             --------ESASTQK------AEKEVTRMVVLMVIGFLVCWVPYASVAFYIFT-HQGS--
2==             --------ESATTQK------AEKEVTRMVIIMVIFFLICWLPYASVAMYIFT-HQGS--
3==             --------ESATTQK------AEKEVTRMVILMVLGFMLAWTPYAVVAFWIFT-NKGA--
4=p             --------DSASTQK------AEREVTKMVILMVFGFLIAWTPYATVAAWIFF-NKGA--
5=p             --------DSASTQK------AEREVTKMVILMVLGFLVAWTPYATVAAWIFF-NKGA--
6==             --------DSASTQK------AEREVTKMVVVMVLGFLVCWAPYASFSLWIVS-HRGE--
7==             --------ESATTQK------AEREVSRMVVVMVGSFCVCYVPYAAFAMYMVN-NRNH--
8=opsin,        --------ESESTQK------AEKEVTRMVVVMVLAFC----------------------
9==             --------ESESTQK------AEKEVTRMVVVMVLAFCFCWGPYAFFACFAAA-NPGY--
10==            --------ESESTQK------AEKEVTRMVVVMIFAYCVCWGPYTFFACFAAA-NPGY--
11==            --------ESESTQK------AEREVSRMVVVMIVAFCICWGPYASFVSFAAA-NPGY--
12==            --------ESESTQK------AEKEVSRMVVVMIVAYCFCWGPYTFFACFAAA-NPGY--
13==            --------EADTTQR------AEREVTRMVIVMVMAFLLCWLPYSTFALVVAT-HKGI--
14==            -----RSNVDKNKET------AEIRIAKAAITICFLFFCSWTPYGVMSLIGAF-GDKT--
15==            -----RSNVDKSKEA------AEIRIAKAAITICFLFFASWTPYGVMSLIGAF-GDKT--
16==            -----RSNVDKSKET------AEIRIAKAAITICFLFFVSWTPYGVMSLIGAF-GDKS--
17==            -----RSNVDKSKET------AEIRIAKAAITICFLFFVSWTPYGVMSLIGAF-GDKS--
18==            -----RS-NEADAQR------AEIRIAKTALVNVSLWFICWTPYALISLKGVM-GDTS--
19==            -----RS-NEAETQR------AEIRIAKTALVNVSLWFICWTPYAAITIQGLL-GNAE--
20==            -----RS-SEDAEKS------AEGKLAKVALVTITLWFMAWTPYLVINCMGLF-KF-E--
21==            -----RS-SEDAEKS------AEGKLAKVALVTITLWFMAWTPYLVINCMGLF-KF-E--
22==            -----RS-SEDADKS------AEGKLAKVALVTISLWFMAWTPYLVINCMGLF-KF-E--
23==            -----RS-SEDCDKS------AEGKLAKVALTTISLWFMAWTPYLVICYFGLF-KI-D--
24==            -----RS-SEDCDKS------AENKLAKVALTTISLWFMAWTPYLIICYFGLF-KI-D--
25==            -----RS-SENQNTS------AECKLAKVALMTISLWFMAWTPYLVINFSGIF-NL-V--
26==            -----RANADQQKQS------AECRLAKVAMMTVGLWFMAWTPYLIISWAGVF-SSGT--
27==            -----R--KAQAGAS------AEMKLAKISMVIITQFMLSWSPYAIIALLAQF-GPAE--
28==            -----R--KAQAGAN------AEMRLAKISIVIVSQFLLSWSPYAVVALLAQF-GPLE--
29==            SRLLKHERKNISIFK------REQKAATTLGIIVGAFTVCWLPFFLLSTARPFICGTSCS
30==            SRLLKHERKNISIFK------REQKAATTLGIIVGAFTVCWLPFFLLSTARPFICGTSCS
31=p            SRLLKHERKNISIFK------REQKAATTLGIIVGAFTVCWLPFFLLSTARPFICGTSCS
32==            PASFERKNERNAEAKRKMALARERKTVKTLGIIMGTFILCWLPFFIVALVLPF-CESSC-
33=p            PACLERKNERNAEAKRKMALARERKTVKTLGIIMGTFILCWLPFFIVALVLPF-CESSC-
34==            ------RTREKLELK------RERKAARTLAIITGAFLICWLPFFIIALIGPF-VDPE--
35=p            ------RTREKLELK------RERKAARTLAIITGAFLICWLPFFIIALIGPF-VDPE--
36==            PSLVRRKPKEAADSK------RERKAAKTLAIITGAFVACWLPFFVLAILVPT-CDCE--
                                      * .           :                       

1==             DFGATFMTLPAFFAKSSALYNPVIYILMNKQFRNCMITTLCC--------GKNPLGDDE-
2==             NFGPIFMTLPAFFAKTASIYNPIIYIMMNKQFRNCMLTSLCC--------GKNPLGDDE-
3==             DFTATLMAVPAFFSKSSSLYNPIIYVLMNKQFRNCMITTICC--------GKNPFGDEDV
4=p             DFSAKFMAIPAFFSKSSALYNPVIYVLLNKQFRNCMLTTIFC--------GKNPLGDDE-
5=p             AFSAQFMAIPAFFSKTSALYNPVIYVLLNKQFRSCMLTTLFC--------GKNPLGDEE-
6==             EFDLRMATIPSCLSKASTVYNPVIYVLMNKQFRSCMMKMV-C--------GKN-IEEDE-
7==             GLDLRLVTIPSFFSKSACIYNPIIYCFMNKQFQACIMKMV-C--------GKA-MTDES-
8=opsin,        ------------------------------------------------------------
9==             PFHPLMAALPAFFAKSATIYNPVIYVFMNRQFRNCILQLF----------GKK-VDDGS-
10==            AFHPLMAALPAYFAKSATIYNPVIYVFMNRQFRNCILQLF----------GKK-VDDGS-
11==            AFHPLAAALPAYFAKSATIYNPVIYVFMNRQFRNCIMQLF----------GKK-VDDGS-
12==            AFHPLAAALPAYFAKSATIYNPIIYVFMNRQFRNCILQLF----------GKK-VDDGS-
13==            IIQPVLASLPSYFSKTATVYNPIIYVFMNKQFQSCLLEMLCCG-----YQPQR-TGKAS-
14==            LLTPGATMIPACACKMVACIDPFVYAISHPRYRMELQKRCPWLAL---------NEKAP-
15==            LLTPGATMIPACTCKMVACIDPFVYAISHPRYRMELQKRCPWLAI---------SEKAP-
16==            LLTQGATMIPACTCKLVACIDPFVYAISHPRYRLELQKRCPWLGV---------NEKSG-
17==            LLTPGATMIPACTCKLVACIEPFVYAISHPRYRMELQKRCPWLGV---------NEKSG-
18==            GITPLVSTLPALLAKSCSCYNPFVYAISHPKYRLAITQHLPWFCV------HE-TETKS-
19==            GITPLLTTLPALLAKSCSCYNPFVYAISHPKFRLAITQHLPWFCV------HE-KDPND-
20==            GLTPLNTIWGACFAKSAACYNPIVYGISHPKYRLALKEKCPCCVF------GK-VDDGK-
21==            GLTPLNTIWGACFAKSAACYNPIVYGISHPKYRLALKEKCPCCVF------GK-VDDGK-
22==            GLTPLNTIWGACFAKSAACYNPIVYGISHPKYRLALKEKCPCCVF------GK-VDDGK-
23==            GLTPLTTIWGATFAKTSAVYNPIVYGISHPKYRIVLKEKCPMCVF------GN-TDEPK-
24==            GLTPLTTIWGATFAKTSAVYNPIVYGISHPNDRLVLKEKCPMCVC------GT-TDEPK-
25==            KISPLFTIWGSLFAKANAVYNPIVYGISHPKYRAALFAKFPSLAC-------A-AEPSS-
26==            RLTPLATIWGSVFAKANSCYNPIVYGISHPRYKAALYQRFPSLAC------GS-GESGS-
27==            WVTPYAAELPVLFAKASAIHNPIVYSVSHPKFREAIQTTFPWLLTCCQFDEKE-CEDAN-
28==            WVTPYAAQLPVMFAKASAIHNPMIYSVSHPKFREAISQTFPWVLTCCQFDDKE-TEDDK-
29==            CIPLWVERTFLWLGYANSLINPFIYAFFNRDLRTTYRSLLQCQYR---------------
30==            CIPLWVERTCLWLGYANSLINPFIYAFFNRDLRPTSRSLLQCQYR---------------
31=p            CIPLWVERTCLWLGYANSLINPFIYAFFNRDLRTTYRSLLQCQYR---------------
32==            HMPTLLGAIINWLGYSNSLLNPVIYAYFNKDFQNAFKKIIKCKFC---------------
33=p            HMPALLGAIINWLGYSNSLLNPVIYAYFNKDFQNAFKKIIKCKFC---------------
34==            GIPPFARSFVLWLGYFNSLLNPIIYTIFSPEFRSAFQKILFGKYR---------------
35=p            GIPPFARSFVLWLGYFNSLLNPIIYTIFSPEFRSAFQKILFGKYR---------------
36==            -VSPVLTSLSLWLGYFNSTLNPVIYTVFSPEFRHAFQRLLCGRRV---------------
                                                                            

1==             -SGASTSKTEVSSVS-TSPVSPA-------------------------------------
2==             -ASATASKTE------TSQVAPA-------------------------------------
3==             SSTVSQSKTEVSSVS-SSQVSPA-------------------------------------
4=p             SSTVSTSKTEVSS------VSPA-------------------------------------
5=p             SSTVSTSKTEVSS------VSPA-------------------------------------
6==             -ASTSSQVTQVSS------VAPEK------------------------------------
7==             -DTCSSQKTEVSTVS-STQVGPN-------------------------------------
8=opsin,        ------------------------------------------------------------
9==             -ELSSASKTEVSSV---SSVSPA-------------------------------------
10==            -ELSSASKTEVSSV---SSVSPA-------------------------------------
11==            -EASTTSRTEVSSVS-NSSVAPA-------------------------------------
12==            -EVST-SRTEVSSVS-NSSVSPA-------------------------------------
13==            -PGTPGPHADVTAAGLRNKVMPAHPV----------------------------------
14==            -ESSAVASTSTTQEP--QQTTAA-------------------------------------
15==            -ESRAAISTSTTQEQ--QQTTAA-------------------------------------
16==            -EISSAQST-TTQEQ--QQTTAA-------------------------------------
17==            -EASSAQST-TTQEQ-TQQTSAA-------------------------------------
18==            -NDDSQSNSTVAQDK-A-------------------------------------------
19==            -VEENQSSNTQTQEK-S-------------------------------------------
20==            -SSDAQSQA-TASEA-ESKA----------------------------------------
21==            -SSDAQSQA-TASEA-ESKA----------------------------------------
22==            -SSEAQSQA-TTSEA-ESKA----------------------------------------
23==            -PDAPASDTETTSEA-DSKA----------------------------------------
24==            -PDAPPSDTETTSEA-ESKD----------------------------------------
25==            -DAVSTTSGTTTVTD-NEKSNA--------------------------------------
26==            -DVKSEASATTTMEE-KPKIPEA-------------------------------------
27==            -DAEEEVVASER--G-GESRDAAQMKEMMAMMQKMQAQQAAYQPPPPPQGY--PPQGYPP
28==            -DAETEIPAGESSDA-APSADAAQMKEMMAMMQKMQQQQAAY----PPQGYAPPPQGYPP
29==            -NINRKLSAAGMHEALKLAERPERPEFVL--------QNADY------------------
30==            -NINRKLSAAGMHEALKLAERPERSEFVL--------QNSDH------------------
31=p            -NINRKLSAAGMHEALKLAERPERSEFVL--------QNSDH------------------
32==            -RQ---------------------------------------------------------
33=p            -RR---------------------------------------------------------
34==            -RGHR-------------------------------------------------------
35=p            -RGHR-------------------------------------------------------
36==            -RRRRA---------------PQ-------------------------------------
                                                                            

1==             ----------------------------------------------------
2==             ----------------------------------------------------
3==             ----------------------------------------------------
4=p             ----------------------------------------------------
5=p             ----------------------------------------------------
6==             ----------------------------------------------------
7==             ----------------------------------------------------
8=opsin,        ----------------------------------------------------
9==             ----------------------------------------------------
10==            ----------------------------------------------------
11==            ----------------------------------------------------
12==            ----------------------------------------------------
13==            ----------------------------------------------------
14==            ----------------------------------------------------
15==            ----------------------------------------------------
16==            ----------------------------------------------------
17==            ----------------------------------------------------
18==            ----------------------------------------------------
19==            ----------------------------------------------------
20==            ----------------------------------------------------
21==            ----------------------------------------------------
22==            ----------------------------------------------------
23==            ----------------------------------------------------
24==            ----------------------------------------------------
25==            ----------------------------------------------------
26==            ----------------------------------------------------
27==            QGAYPPPQGYPPQGYPPQGYPPQGYPPQGAPPQVEAPQGAPPQGVDNQAYQA
28==            QGY--PPQGYPPQGYPPQGYPP---PPQGAPPQ-GAPPAAPPQGVDNQAYQA
29==            ---------------------------------------CRKKGHDS-----
30==            ---------------------------------------CGKKGHDT-----
31=p            ---------------------------------------CGKKGHDT-----
32==            ----------------------------------------------------
33=p            ----------------------------------------------------
34==            ----------------------------------------------------
35=p            ----------------------------------------------------
36==            ----------------------------------------------------