Mercurial > repos > rnateam > mafft
view test-data/mafft_explicit_amino_blosum80.clustal.aln @ 16:8e649f27aa0d draft default tip
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/mafft commit 3d98df472498e1273369d23822d10db14f337443
| author | bgruening |
|---|---|
| date | Thu, 22 Aug 2024 19:20:24 +0000 |
| parents | bf28a8cff401 |
| children |
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CLUSTAL format alignment by MAFFT FFT-NS-2 (v7.520) 1== ----------------------------------------MN------------------ 2== ----------------------------------------MN------------------ 3== ----------------------------------------MN------------------ 4=p ----------------------------------------MN------------------ 5=p ----------------------------------------MN------------------ 6== ----------------------------------------MK------------------ 7== ----------------------------------------MR------------------ 8=opsin, ------------------------------------------------------------ 9== ----------------------------------------MAQQWSLQRLAGRHPQDS-- 10== ----------------------------------------MAQQWSLQRLAGRHPQDS-- 11== ----------------------------------------MTEAWNVAVFAARRSRDD-- 12== ----------------------------------------MA-AWEAAFAARRRHEE--- 13== ----------------------------------------MS------------------ 14== ----------MESGNVS-------------SSLFGNVSTALR------------------ 15== ----------MEYHNVS-------------SVL-GNVSSVLR------------------ 16== ----------ME-------------------PLCNASEPPLR------------------ 17== ----------MD-------------------ALCNASEPPLR------------------ 18== --------------------------------MTNATGPQMA------------------ 19== --------------------------------MANVTGPQMA------------------ 20== ----------ME---SF-------------AVAAAQLGPHFA------------------ 21== ----------ME---SF-------------AVAAAQLGPHFA------------------ 22== ----------MD---SF-------------AAVATQLGPQFA------------------ 23== -----MERSHLP---ET-------------PFDLAHSGPRFQ------------------ 24== -----MERSLLP---EP-------------PLAMALLGPRFE------------------ 25== --------------------------------MIAVSGPSYE------------------ 26== ----------------------------------MANQLSYS------------------ 27== ---------------------------------------MVE------------------ 28== ----------------------------------------MG------------------ 29== ---------MMDVNSSGRPDLYGHLRSFL-LPEVGRGLPDLSPDGGADPVAG-SWAPHLL 30== -------------------------------------------------------MPHLL 31=p -------------------------------------------------------MPHLL 32== ----------MDVLSP-------------------------------------------- 33=p ----------MDVFSF-------------------------------------------- 34== MANFTFGDLALDVARMG-----GLASTPSGLRSTGLTTPGLSPTGLVTSDFNDSYG---L 35=p MANFTFGDLALDVARMG-----GLASTPSGLRSTGLTTPGLSPTGLVTSDFNDSYG---L 36== -MEGAEGQEELDWEAL-------YLRLP--LQNCSWNSTGWEPNWNVTVVPNTTW----- 1== -----GTE--GDN-FYVP----FSNKTGLARSPYEYPQY-YLAEPWK-----------YS 2== -----GTE--GPN-FYVP----FSNITGVVRSPFEQPQY-YLAEPWQ-----------FS 3== -----GTE--GIN-FYVP----MSNKTGVVRSPFEYPQY-YLAEPWK-----------YR 4=p -----GTE--GKN-FYVP----MSNRTGLVRSPFEYPQY-YLAEPWQ-----------FK 5=p -----GTE--GNN-FYVP----LSNRTGLVRSPFEYPQY-YLAEPWQ-----------FK 6== -----QVPEFHED-FYIPIPLDINNLSAY--SPFLVPQD-HLGNQGI-----------FM 7== -----KMS--EEE-FYL-----FKNISSV--GPWDGPQY-HIAPVWA-----------FY 8=opsin, ------------------------------------------------------------ 9== ----YEDSTQSSI-FT------YTNSNST-RGPFEGPNY-HIAPRWV-----------YH 10== ----YEDSTQSSI-FT------YTNSNST-RGPFEGPNY-HIAPRWV-----------YH 11== -----DDTTRGSV-FT------YTNTNNT-RGPFEGPNY-HIAPRWV-----------YN 12== -----EDTTRDSV-FT------YTNSNNT-RGPFEGPNY-HIAPRWV-----------YN 13== -----SNSSQAP-------------PNGT-PGPFDGPQWPYQAPQST-----------YV 14== -----PEARLSA-----------ETRLLGWNVPPEELR--HIPEHWLT--YPEPPESMNY 15== -----PDARLSA-----------ESRLLGWNVPPDELR--HIPEHWLI--YPEPPESMNY 16== -----PEAR-SSG---N-----GDLQFLGWNVPPDQIQ--YIPEHWLT--QLEPPASMHY 17== -----PEARMSSG---S-----DELQFLGWNVPPDQIQ--YIPEHWLT--QLEPPASMHY 18== -----YYGAASMD-FGY-----PEGVSIVDFVRPEIKP--YVHQHWYN--YPPVNPMWHY 19== -----FYGSGAAT-FGY-----PEGMTVADFVPDRVKH--MVLDHWYN--YPPVNPMWHY 20== -----PLS----------------NGSVVDKVTPDMAH--LISPYWNQ--FPAMDPIWAK 21== -----PLS----------------NGSVVDKVTPDMAH--LISPYWNQ--FPAMDPIWAK 22== -----APS----------------NGSVVDKVTPDMAH--LISPYWDQ--FPAMDPIWAK 23== -----AQSSG--------------NGSVLDNVLPDMAH--LVNPYWSR--FAPMDPMMSK 24== -----AQTGG--------------NRSVLDNVLPDMAP--LVNPHWSR--FAPMDPTMSK 25== -----AFSYGGQARF--------NNQTVVDKVPPDMLH--LIDANWYQ--YPPLNPMWHG 26== -----SLGWPYQP-----------NASVVDTMPKEMLY--MIHEHWYA--FPPMNPLWYS 27== -----STTLVNQT-WWY-------NPTVD------------IHPHWAK--FDPIPDAVYY 28== -----RDLRDNET-WWY-------NPSIV------------VHPHWRE--FDQVPDAVYY 29== S---EVTASPAPT-WDAP----PDNASGCGEQIN----------------YGRVE---KV 30== SGFLEVTASPAPT-WDAP----PDNVSGCGEQIN----------------YGRVE---KV 31=p SGFLEVTASPAPT-WDAP----PDNVSGCGEQIN----------------YGRVE---KV 32== -GQGNNTTSPPAP-FET-----GGNTTGISDVT-----------------VSYQ-----V 33=p -GQGNNTTASQEP-FGT-----GGNVTSISDVT-----------------FSYQ-----V 34== TGQFINGSHSSRS-RDNA----SANDTSATNMTDD--------RYWSLTVYSHEH---LV 35=p TGQFINGSHSSRS-RDNA----SANDTSATNMTDD--------RYWSLTVYSHEH---LV 36== -------WQASAP-FDTP----AALVRAAAK----------------------------- 1== ALAAYMFFLILVGFPVNFLTLFVTVQHKKLRTPLNYILLNLAMANLFMVLFG-FTVTMYT 2== MLAAYMFLLIVLGFPINFLTLYVTVQHKKLRTPLNYILLNLAVADLFMVFGG-FTTTLYT 3== LVCCYIFFLISTGLPINLLTLLVTFKHKKLRQPLNYILVNLAVADLFMACFG-FTVTFYT 4=p ILALYLFFLMSMGLPINGLTLVVTAQHKKLRQPLNFILVNLAVAGTIMVCFG-FTVTFYT 5=p LLAVYMFFLICLGLPINGLTLICTAQHKKLRQPLNFILVNLAVAGAIMVCFG-FTVTFYT 6== AMSVFMFFIFIGGASINILTILCTIQFKKLRSHLNYILVNLSIANLFVAIFG-SPLSFYS 7== LQAAFMGTVFLIGFPLNAMVLVATLRYKKLRQPLNYILVNVSFGGFLLCIFS-VFPVFVA 8=opsin, --------------------------------------------DLAETVIA-STISIVN 9== LTSVWMIFVVIASVFTNGLVLAATMKFKKLRHPLNWILVNLAVADLAETVIA-STISVVN 10== LTSVWMIFVVTASVFTNGLVLAATMKFKKLRHPLNWILVNLAVADLAETVIA-STISIVN 11== LVSFFMIIVVIASCFTNGLVLVATAKFKKLRHPLNWILVNLAFVDLVETLVA-STISVFN 12== LTSVWMIFVVAASVFTNGLVLVATWKFKKLRHPLNWILVNLAVADLGETVIA-STISVIN 13== GVAVLMGTVVACASVVNGLVIVVSICYKKLRSPLNYILVNLAVADLLVTLCG-SSVSLSN 14== LLGTLYIFFTLMSMLGNGLVIWVFSAAKSLRTPSNILVINLAFCDFMMMVK--TPIFIYN 15== LLGTLYIFFTVISMIGNGLVMWVFSAAKSLRTPSNILVINLAFCDFMMMIK--TPIFIYN 16== MLGVFYIFLFCASTVGNGMVIWIFSTSKSLRTPSNMFVLNLAVFDLIMCLK--APIF--N 17== MLGVFYIFLFFASTLGNGMVIWIFSTSKSLRTPSNMFVLNLAVFDLIMCLK--APIFIYN 18== LLGVIYLFLGTVSIFGNGLVIYLFNKSAALRTPANILVVNLALSDLIMLTTN-VPFFTYN 19== LLGVVYLFLGVISIAGNGLVIYLYMKSQALKTPANMLIVNLALSDLIMLTTN-FPPFCYN 20== ILTAYMIMIGMISWCGNGVVIYIFATTKSLRTPANLLVINLAISDFGIMITN-TPMMGIN 21== ILTAYMIMIGMISWCGNGVVIYIFATTKSLRTPANLLVINLAISDFGIMITN-TPMMGIN 22== ILTAYMIIIGMISWCGNGVVIYIFATTKSLRTPANLLVINLAISDFGIMITN-TPMMGIN 23== ILGLFTLAIMIISCCGNGVVVYIFGGTKSLRTPANLLVLNLAFSDFCMMASQ-SPVMIIN 24== ILGLFTLVILIISCCGNGVVVYIFGGTKSLRTPANLLVLNLAFSDFCMMASQ-SPVMIIN 25== ILGFVIGMLGFVSAMGNGMVVYIFLSTKSLRTPSNLFVINLAISNFLMMFCM-SPPMVIN 26== ILGVAMIILGIICVLGNGMVIYLMMTTKSLRTPTNLLVVNLAFSDFCMMAFM-MPTMTSN 27== SVGIFIGVVGIIGILGNGVVIYLFSKTKSLQTPANMFIINLAMSDLSFSAINGFPLKTIS 28== SLGIFIGICGIIGCGGNGIVIYLFTKTKSLQTPANMFIINLAFSDFTFSLVNGFPLMTIS 29== VIGSILTLITLLTIAGNCLVVISVCFVKKLRQPSNYLIVSLALADLSVAVAV-MPFVSVT 30== VIGSILTLITLLTIAGNCLVVISVSFVKKLRQPSNYLIVSLALADLSVAVAV-MPFVSVT 31=p VIGSILTLITLLTIAGNCLVVISVSFVKKLRQPSNYLIVSLALADLSVAVAV-MPFVSVT 32== ITSLLLGTLIFCAVLGNACVVAAIALERSLQNVANYLIGSLAVTDLMVSVLV-LPMAALY 33=p ITSLLLGTLIFCAVLGNACVVAAIALERSLQNVANYLIGSLAVTDLMVSVLV-LPMAALY 34== LTSVILGLFVLCCIIGNCFVIAAVMLERSLHNVANYLILSLAVADLMVAVLV-MPLSVVS 35=p LTSVILGLFVLCCIIGNCFVIAAVMLERSLHNVANYLILSLAVADLMVAVLV-MPLSVVS 36== --AVVLGLLILATVVGNVFVIAAILLERHLRSAANNLILSLAVADLLVACLV-MPLGAVY . 1== SMN-GYFV--FGPTMCSIEGFFATLGGEVALWSLVVLAIERYIVICKPMGN-FRFGNTHA 2== SLH-GYFV--FGPTGCNLEGFFATLGGEIGLWSLVVLAIERYVVVCKPMSN-FRFGENHA 3== AWN-GYFV--FGPVGCAVEGFFATLGGQVALWSLVVLAIERYIVVCKPMGN-FRFSATHA 4=p AIN-GYFV--LGPTGCAVEGFMATLGGEVALWSLVVLAIERYIVVCKPMGS-FKFSSSHA 5=p AIN-GYFA--LGPTGCAVEGFMATLGGEVALWSLVVLAIERYIVVCKPMGS-FKFSSTHA 6== FFN-RYFI--FGATACKIEGFLATLGGMVGLWSLAVVAFERWLVICKPLGN-FTFKTPHA 7== SCN-GYFV--FGRHVCALEGFLGTVAGLVTGWSLAFLAFERYIVICKPFGN-FRFSSKHA 8=opsin, QVS-GYFV--LGHPMCVLEGYTVSLCGITGLWSLAIISWERWLVVCKPFGN-VRFDAKLA 9== QVY-GYFV--LGHPMCVLEGYTVSLCGITGLWSLAIISWERWMVVCKPFGN-VRFDAKLA 10== QVS-GYFV--LGHPMCVLEGYTVSLCGITGLWSLAIISWERWLVVCKPFGN-VRFDAKLA 11== QIF-GYFI--LGHPLCVIEGYVVSSCGITGLWSLAIISWERWFVVCKPFGN-IKFDSKLA 12== QIS-GYFI--LGHPMCVVEGYTVSACGITALWSLAIISWERWFVVCKPFGN-IKFDGKLA 13== NIN-GFFV--FGRRMCELEGFMVSLTGIVGLWSLAILALERYVVVCKPLGD-FQFQRRHA 14== SFH-QGYA--LGHLGCQIFGIIGSYTGIAAGATNAFIAYDRFNVITRPMEG--KMTHGKA 15== SFH-QGYA--LGHLGCQIFGVIGSYTGIAAGATNAFIAYDRYNVITRPMEG--KMTHGKA 16== SFH-RGFAIYLGNTWCQIFASIGSYSGIGAGMTNAAIGYDRYNVITKPMNR--NMTFTKA 17== SFH-RGFA--LGNTWCQIFASIGSYSGIGAGMTNAAIGYDRYNVITKPMNR--NMTFTKA 18== CFSGGVWM--FSPQYCEIYACLGAITGVCSIWLLCMISFDRYNIICNGFNG-PKLTTGKA 19== CFSGGRWM--FSGTYCEIYAALGAITGVCSIWTLCMISFDRYNIICNGFNG-PKLTQGKA 20== LYF-ETWV--LGPMMCDIYAGLGSAFGCSSIWSMCMISLDRYQVIVKGMAG-RPMTIPLA 21== LYF-ETWV--LGPMMCDIYAGLGSAFGCSSIWSMCMISLDRYQVIVKGMAG-RPMTIPLA 22== LYF-ETWV--LGPMMCDIYAGLGSAFGCSSIWSMCMISLDRYQVIVKGMAG-RPMTIPLA 23== FYY-ETWV--LGPLWCDIYAGCGSLFGCVSIWSMCMIAFDRYNVIVKGING-TPMTIKTS 24== FYY-ETWV--LGPLWCDIYAACGSLFGCVSIWSMCMIAFDRYNVIVKGING-TPMTIKTS 25== CYY-ETWV--LGPLFCQIYAMLGSLFGCGSIWTMTMIAFDRYNVIVKGLSG-KPLSINGA 26== CFA-ETWI--LGPFMCEVYGMAGSLFGCASIWSMVMITLDRYNVIVRGMAA-APLTHKKA 27== AFM-KKWI--FGKVACQLYGLLGGIFGFMSINTMAMISIDRYNVIGRPMAASKKMSHRRA 28== CFL-KKWI--FGFAACKVYGFIGGIFGFMSIMTMAMISIDRYNVIGRPMAASKKMSHRRA 29== DLIGGKWI--FGHFFCNVFIAMDVMCCTASIMTLCVISIDRYLGITRPLTYPVRQNGKCM 30== DLIGGKWI--FGHFFCNVFIAMDVMCCTASIMTLCVISIDRYLGITRPLTYPVRQNGKCM 31=p DLIGGKWI--FGHFFCNVFIAMDVMCCTASIMTLCVISIDRYLGITRPLTYPVRQNGKCM 32== QVL-NKWT--LGQVTCDLFIALDVLCCTSSILHLCAIALDRYWAITDPIDYVNKRTPRRA 33=p QVL-NKWT--LGQVTCDLFIALDVLCCTSSILHLCAIALDRYWAITDPIDYVNKRTPRRA 34== EIS-KVWF--LHSEVCDMWISVDVLCCTASILHLVAIAMDRYWAVTS-IDYIRRRSARRI 35=p EIS-KVWF--LHSEVCDMWISVDVLCCTASILHLVAIAMDRYWAVTS-IDYIRRRSARRI 36== EVV-QRWT--LGPELCDMWTSGDVLCCTASILHLVAIALDRYWAVTN-IDYIHASTAKRV : : * : : :*: : : 1== IMGVAFTWIMALAC-AAPPLVG-W-----SRYIPEGMQCSCGPDYYTLNPNFNNESYVVY 2== IMGVAFTWVMALAC-AAPPLVG-W-----SRYIPEGMQCSCGIDYYTLKPEVNNESFVIY 3== MMGIAFTWVMAFSC-AAPPLFG-W-----SRYMPEGMQCSCGPDYYTHNPDYHNESYVLY 4=p FAGIAFTWVMALAC-AAPPLFG-W-----SRYIPEGMQCSCGPDYYTLNPDYNNESYVIY 5=p SAGIAFTWVMAMAC-AAPPLVG-W-----SRYIPEGIQCSCGPDYYTLNPEYNNESYVLY 6== IAGCILPWISALAA-SLPPLFG-W-----SRYIPEGLQCSCGPDWYTTNNKYNNESYVMF 7== LTVVLATWTIGIGV-SIPPFFG-W-----SRFIPEGLQCSCGPDWYTVGTKYRSESYTWF 8=opsin, IVGIAFSWIWAAVW-TAPPIFG-W-----SRYWPHGLKTSCGPDVFSGSSYPGVQSYMIV 9== IVGIAFSWIWAAVW-TAPPIFG-W-----SRYWPHGLKTSCGPDVFSGSSYPGVQSYMIV 10== IVGIAFSWIWSAVW-TAPPIFG-W-----SRYWPHGLKTSCGPDVFSGSSYPGVQSYMIV 11== IIGIVFSWVWAWGW-SAPPIFG-W-----SRYWPHGLKTSCGPDVFSGSVELGCQSFMLT 12== VAGILFSWLWSCAW-TAPPIFG-W-----SRYWPHGLKTSCGPDVFSGSSDPGVQSYMVV 13== VSGCAFTWGWALLW-SAPPLLG-W-----SSYVPEGLRTSCGPNWYTGGSNN--NSYILS 14== IAMIIFIYMYATPW-VVACYTETW-----GRFVPEGYLTSCTFDYLT--DNFDTRLFVAC 15== IAMIIFIYLYATPW-VVACYTESW-----GRFVPEGYLTSCTFDYLT--DNFDTRLFVAC 16== VIMNIIIWLYCTPW-VVLPLTQFW-----DRFVPEGYLTSCSFDYLS--DNFDTRLFVGT 17== VIMNIIIWLYCTPW-VVLPLTQFW-----DRFVPEGYLTSCSFDYLS--DNFDTRLFVGT 18== VVFALISWVIAIGC-ALPPFFG-W-----GNYILEGILDSCSYDYLT--QDFNTFSYNIF 19== TFMCGLAWVISVGW-SLPPFFG-W-----GSYTLEGILDSCSYDYFT--RDMNTITYNIC 20== LGKM---------------------------YVPEGNLTSCGIDYLE--RDWNPRSYLIF 21== LGKIAYIWFMSSIW-CLAPAFG-W-----SRYVPEGNLTSCGIDYLE--RDWNPRSYLIF 22== LGKIAYIWFMSTIWCCLAPVFG-W-----SRYVPEGNLTSCGIDYLE--RDWNPRSYLIF 23== IMKILFIWMMAVFW-TVMPLIG-W-----SAYVPEGNLTACSIDYMT--RMWNPRSYLIT 24== IMKIAFIWMMAVFW-TIMPLIG-W-----SSYVPEGNLTACSIDYMT--RQWNPRSYLIT 25== LIRIIAIWLFSLGW-TIAPMFG-W-----NRYVPEGNMTACGTDYFN--RGLLSASYLVC 26== TLLLLFVWIWSGGW-TILPFFG-W-----SRYVPEGNLTSCTVDYLT--KDWSSASYVVI 27== FLMIIFVWMWSIVW-SVGPVFN-W-----GAYVPEGILTSCSFDYLS--TDPSTRSFILC 28== FIMIIFVWLWSVLW-AIGPIFG-W-----GAYTLEGVLCNCSFDYIS--RDSTTRSNILC 29== AKMILSVWLLSASI-TLPPLFG-W-----AQNVNDDKVCLISQDF----------GYTIY 30== AKMILSVWLLSASI-TLPPLFG-W-----AQNVNDDKVCLISQDF----------GYTIY 31=p AKMILSVWLLSASI-TLPPLFG-W-----AQNVNDDKVCLISQDF----------GYTIY 32== AALISLTWLIGFLI-SIPPMLG-WRTPEDRSDPD---ACTISKDH----------GYTIY 33=p AALISLTWLIGFLI-SIPPMLG-WRTPEDRSDPD---ACTISKDH----------GYTIY 34== LLMIMVVWIVALFI-SIPPLFG-WRDP--NNDPDKTGTCIISQDK----------GYTIF 35=p LLMIMVVWIVALFI-SIPPLFG-WRDP--NNDPDKTGTCIISQDK----------GYTIF 36== GMMIACVWTVSFFV-CIAQLLG-WKDPDWNQRVSEDLRCVVSQDV----------GYQIF : 1== MFVVHFLVPFVIIFFCYGRLLCTV----KE------------------------------ 2== MFVVHFTIPMIVIFFCYGQLVFTV----KE------------------------------ 3== MFVIHFIIPVVVIFFSYGRLICKV----RE------------------------------ 4=p MFVCHFILPVAVIFFTYGRLVCTV----KA------------------------------ 5=p MFICHFILPVTIIFFTYGRLVCTV----KA------------------------------ 6== LFCFCFAVPFGTIVFCYGQLLITL----KL------------------------------ 7== LFIFCFIVPLSLICFSYTQLLRAL----KA------------------------------ 8=opsin, LMVTCCITPLSIIVLCYLQVWLAI----RA------------------------------ 9== LMVTCCITPLSIIVLCYLQVWLAI----RA------------------------------ 10== LMVTCCIIPLAIIMLCYLQVWLAI----RA------------------------------ 11== LMITCCFLPLFIIIVCYLQVWMAI----RA------------------------------ 12== LMVTCCFFPLAIIILCYLQVWLAI----RA------------------------------ 13== LFVTCFVLPLSLILFSYTNLLLTL----RA------------------------------ 14== IFFFSFVCPTTMITYYYSQIVGHVFSHEKA------------------------------ 15== IFFFSFVCPTTMITYYYSQIVGHVFSHEKA------------------------------ 16== IFFFSFVCPTLMILYYYSQIVGHVFSHEKA------------------------------ 17== IFLFSFVVPTLMILYYYSQIVGHVFNHEKA------------------------------ 18== IFVFDYFLPAAIIVFSYVFIVKAIFAHEAA------------------------------ 19== IFIFDFFLPASVIVFSYVFIVKAIFAHEAA------------------------------ 20== YSIFVYYIPLFLICYSYWFIIAAVSAHEKA------------------------------ 21== YSIFVYYIPLFLICYSYWFIIAAVSAHEKA------------------------------ 22== YSIFVYYIPLFLICYSYWFIIAAVSAHEKA------------------------------ 23== YSLFVYYTPLFLICYSYWFIIAAVAAHEKA------------------------------ 24== YSLFVYYTPLFMICYSYWFIIATVAAHEKA------------------------------ 25== YGIWVYFVPLFLIIYSYWFIIQAVAAHEKN------------------------------ 26== YGLAVYFLPLITMIYCYFFIVHAVAEHEKQ------------------------------ 27== MYFCGFMLPIIIIAFCYFNIVMSVSNHEKE------------------------------ 28== MFILGFFGPILIIFFCYFNIVMSVSNHEKE------------------------------ 29== STAVAFYIPMSVMLFMYYQIYKAARKSAAKHKF-----------------PGF------- 30== STAVAFYIPMSVMLFMYYQIYKAARKSAAKHKF-----------------PGF------- 31=p STAVAFYIPMSVMLFMYYQIYKAARKSAAKHKF-----------------PGF------- 32== STFGAFYIPLLLMLVLYGRIFRAARFRIRK------------------------------ 33=p STFGAFYIPLLLMLVLYGRIFRAARFRIRK------------------------------ 34== STVGAFYLPMLVMMIIYIRIWLVARSRIRKDKFQMTKARLKTEETTLVASPKTEYSVVSD 35=p STVGAFYLPMLVMMIIYIRIWLVARSRIRKDKFQMTKARLKTEETTLVASPKTEYSVVSD 36== ATASSFYVPVLIILILYWRIYQTARKRIR------------------------------- * : * : 1== --------------------------AAAAQQ---------------------------- 2== --------------------------AAAQQQ---------------------------- 3== --------------------------AAAQQQ---------------------------- 4=p --------------------------AAAQQQ---------------------------- 5=p --------------------------AAAQQQ---------------------------- 6== --------------------------AAKAQA---------------------------- 7== --------------------------VAAQQQ---------------------------- 8=opsin, --------------------------VAKQQK---------------------------- 9== --------------------------VAKQQK---------------------------- 10== --------------------------VAKQQK---------------------------- 11== --------------------------VAAQQK---------------------------- 12== --------------------------VAAQQK---------------------------- 13== --------------------------AAAQQK---------------------------- 14== --------------------------LRDQAKKM----------------------NVES 15== --------------------------LRDQAKKM----------------------NVDS 16== --------------------------LREQAKKM----------------------NVES 17== --------------------------LREQAKKM----------------------NVES 18== --------------------------MRAQAKKM----------------------NVST 19== --------------------------MRAQAKKM----------------------NVTN 20== --------------------------MREQAKKM----------------------NVKS 21== --------------------------MREQAKKM----------------------NVKS 22== --------------------------MREQAKKM----------------------NVKS 23== --------------------------MREQAKKM----------------------NVKS 24== --------------------------MRDQAKKM----------------------NVKS 25== --------------------------MREQAKKM----------------------NVAS 26== --------------------------LREQAKKM----------------------NVAS 27== --------------------------MAAMAKRL----------------------NAKE 28== --------------------------MAAMAKRL----------------------NAKE 29== --------------------------PRVEPD------------------------SVIA 30== --------------------------PRVQPE------------------------SVIS 31=p --------------------------PRVQPE------------------------SVIS 32== ---------TVKKVEKTGADTRHGASPAPQPKKS-----------VNGESGSR------- 33=p ---------TVRKVEKKGAGTSLGTSSAPPPKKS-----------LNGQPGSG------- 34== CNGCNSPDSTTEKKKRRAPFKSYGCSPRPERKKNRAKKLPENANGVNSNSSS-------- 35=p CNGCNSPDSTTEKKKRRAPFKSYGCSPRPERKKNRAKKLPENANGVNSNSSS-------- 36== --------------RRRGATARGGVGPPP---------VPAGGALVAGGGSGGIAAAVVA 1== ------------------------------------------------------------ 2== ------------------------------------------------------------ 3== ------------------------------------------------------------ 4=p ------------------------------------------------------------ 5=p ------------------------------------------------------------ 6== ------------------------------------------------------------ 7== ------------------------------------------------------------ 8=opsin, ------------------------------------------------------------ 9== ------------------------------------------------------------ 10== ------------------------------------------------------------ 11== ------------------------------------------------------------ 12== ------------------------------------------------------------ 13== ------------------------------------------------------------ 14== L----------------------------------------------------------- 15== L----------------------------------------------------------- 16== L----------------------------------------------------------- 17== L----------------------------------------------------------- 18== L----------------------------------------------------------- 19== L----------------------------------------------------------- 20== L----------------------------------------------------------- 21== L----------------------------------------------------------- 22== L----------------------------------------------------------- 23== L----------------------------------------------------------- 24== L----------------------------------------------------------- 25== L----------------------------------------------------------- 26== L----------------------------------------------------------- 27== L----------------------------------------------------------- 28== L----------------------------------------------------------- 29== L-----------------NGIVKLQ--------KEVEECAN------------------L 30== L-----------------NGVVKLQ--------KEVEECAN------------------L 31=p L-----------------NGVVKLQ--------KEVEECAN------------------L 32== --NWRLGVESKAGGALCANGAVRQGDDGAALEVIEVHRVGNSKEHLPLPSEAGPTPCA-- 33=p --DWRRCAENRAVGTPCTNGAVRQGDDEATLEVIEVHRVGNSKEHLPLPSESGSNSYA-- 34== --SERLKQIQIETAEAFANGCA----EEASIAMLERQ-CNNGKKISSNDTPYS------- 35=p --SERLKQIQIETAEAFANGCA----EEASIAMLERQ-CNNGKKISSNDTPYS------- 36== VIGRPLPTISETTTTGFTNVSS----NNTS---PEKQSCANGLEADPPTTGYGAVAAAYY 1== --------ESASTQK------AEKEVTRMVVLMVIGFLVCWVPYASVAFYIFT-HQGS-- 2== --------ESATTQK------AEKEVTRMVIIMVIFFLICWLPYASVAMYIFT-HQGS-- 3== --------ESATTQK------AEKEVTRMVILMVLGFMLAWTPYAVVAFWIFT-NKGA-- 4=p --------DSASTQK------AEREVTKMVILMVFGFLIAWTPYATVAAWIFF-NKGA-- 5=p --------DSASTQK------AEREVTKMVILMVLGFLVAWTPYATVAAWIFF-NKGA-- 6== --------DSASTQK------AEREVTKMVVVMVLGFLVCWAPYASFSLWIVS-HRGE-- 7== --------ESATTQK------AEREVSRMVVVMVGSFCVCYVPYAAFAMYMVN-NRNH-- 8=opsin, --------ESESTQK------AEKEVTRMVVVMVLAFC---------------------- 9== --------ESESTQK------AEKEVTRMVVVMVLAFCFCWGPYAFFACFAAA-NPGY-- 10== --------ESESTQK------AEKEVTRMVVVMIFAYCVCWGPYTFFACFAAA-NPGY-- 11== --------ESESTQK------AEREVSRMVVVMIVAFCICWGPYASFVSFAAA-NPGY-- 12== --------ESESTQK------AEKEVSRMVVVMIVAYCFCWGPYTFFACFAAA-NPGY-- 13== --------EADTTQR------AEREVTRMVIVMVMAFLLCWLPYSTFALVVAT-HKGI-- 14== -----RSNVDKNKET------AEIRIAKAAITICFLFFCSWTPYGVMSLIGAF-GDKT-- 15== -----RSNVDKSKEA------AEIRIAKAAITICFLFFASWTPYGVMSLIGAF-GDKT-- 16== -----RSNVDKSKET------AEIRIAKAAITICFLFFVSWTPYGVMSLIGAF-GDKS-- 17== -----RSNVDKSKET------AEIRIAKAAITICFLFFVSWTPYGVMSLIGAF-GDKS-- 18== -----RS-NEADAQR------AEIRIAKTALVNVSLWFICWTPYALISLKGVM-GDTS-- 19== -----RS-NEAETQR------AEIRIAKTALVNVSLWFICWTPYAAITIQGLL-GNAE-- 20== -----RS-SEDAEKS------AEGKLAKVALVTITLWFMAWTPYLVINCMGLF-KF-E-- 21== -----RS-SEDAEKS------AEGKLAKVALVTITLWFMAWTPYLVINCMGLF-KF-E-- 22== -----RS-SEDADKS------AEGKLAKVALVTISLWFMAWTPYLVINCMGLF-KF-E-- 23== -----RS-SEDCDKS------AEGKLAKVALTTISLWFMAWTPYLVICYFGLF-KI-D-- 24== -----RS-SEDCDKS------AENKLAKVALTTISLWFMAWTPYLIICYFGLF-KI-D-- 25== -----RS-SENQNTS------AECKLAKVALMTISLWFMAWTPYLVINFSGIF-NL-V-- 26== -----RANADQQKQS------AECRLAKVAMMTVGLWFMAWTPYLIISWAGVF-SSGT-- 27== -----R--KAQAGAS------AEMKLAKISMVIITQFMLSWSPYAIIALLAQF-GPAE-- 28== -----R--KAQAGAN------AEMRLAKISIVIVSQFLLSWSPYAVVALLAQF-GPLE-- 29== SRLLKHERKNISIFK------REQKAATTLGIIVGAFTVCWLPFFLLSTARPFICGTSCS 30== SRLLKHERKNISIFK------REQKAATTLGIIVGAFTVCWLPFFLLSTARPFICGTSCS 31=p SRLLKHERKNISIFK------REQKAATTLGIIVGAFTVCWLPFFLLSTARPFICGTSCS 32== PASFERKNERNAEAKRKMALARERKTVKTLGIIMGTFILCWLPFFIVALVLPF-CESSC- 33=p PACLERKNERNAEAKRKMALARERKTVKTLGIIMGTFILCWLPFFIVALVLPF-CESSC- 34== ------RTREKLELK------RERKAARTLAIITGAFLICWLPFFIIALIGPF-VDPE-- 35=p ------RTREKLELK------RERKAARTLAIITGAFLICWLPFFIIALIGPF-VDPE-- 36== PSLVRRKPKEAADSK------RERKAAKTLAIITGAFVACWLPFFVLAILVPT-CDCE-- * . : 1== DFGATFMTLPAFFAKSSALYNPVIYILMNKQFRNCMITTLCC--------GKNPLGDDE- 2== NFGPIFMTLPAFFAKTASIYNPIIYIMMNKQFRNCMLTSLCC--------GKNPLGDDE- 3== DFTATLMAVPAFFSKSSSLYNPIIYVLMNKQFRNCMITTICC--------GKNPFGDEDV 4=p DFSAKFMAIPAFFSKSSALYNPVIYVLLNKQFRNCMLTTIFC--------GKNPLGDDE- 5=p AFSAQFMAIPAFFSKTSALYNPVIYVLLNKQFRSCMLTTLFC--------GKNPLGDEE- 6== EFDLRMATIPSCLSKASTVYNPVIYVLMNKQFRSCMMKMV-C--------GKN-IEEDE- 7== GLDLRLVTIPSFFSKSACIYNPIIYCFMNKQFQACIMKMV-C--------GKA-MTDES- 8=opsin, ------------------------------------------------------------ 9== PFHPLMAALPAFFAKSATIYNPVIYVFMNRQFRNCILQLF----------GKK-VDDGS- 10== AFHPLMAALPAYFAKSATIYNPVIYVFMNRQFRNCILQLF----------GKK-VDDGS- 11== AFHPLAAALPAYFAKSATIYNPVIYVFMNRQFRNCIMQLF----------GKK-VDDGS- 12== AFHPLAAALPAYFAKSATIYNPIIYVFMNRQFRNCILQLF----------GKK-VDDGS- 13== IIQPVLASLPSYFSKTATVYNPIIYVFMNKQFQSCLLEMLCCG-----YQPQR-TGKAS- 14== LLTPGATMIPACACKMVACIDPFVYAISHPRYRMELQKRCPWLAL---------NEKAP- 15== LLTPGATMIPACTCKMVACIDPFVYAISHPRYRMELQKRCPWLAI---------SEKAP- 16== LLTQGATMIPACTCKLVACIDPFVYAISHPRYRLELQKRCPWLGV---------NEKSG- 17== LLTPGATMIPACTCKLVACIEPFVYAISHPRYRMELQKRCPWLGV---------NEKSG- 18== GITPLVSTLPALLAKSCSCYNPFVYAISHPKYRLAITQHLPWFCV------HE-TETKS- 19== GITPLLTTLPALLAKSCSCYNPFVYAISHPKFRLAITQHLPWFCV------HE-KDPND- 20== GLTPLNTIWGACFAKSAACYNPIVYGISHPKYRLALKEKCPCCVF------GK-VDDGK- 21== GLTPLNTIWGACFAKSAACYNPIVYGISHPKYRLALKEKCPCCVF------GK-VDDGK- 22== GLTPLNTIWGACFAKSAACYNPIVYGISHPKYRLALKEKCPCCVF------GK-VDDGK- 23== GLTPLTTIWGATFAKTSAVYNPIVYGISHPKYRIVLKEKCPMCVF------GN-TDEPK- 24== GLTPLTTIWGATFAKTSAVYNPIVYGISHPNDRLVLKEKCPMCVC------GT-TDEPK- 25== KISPLFTIWGSLFAKANAVYNPIVYGISHPKYRAALFAKFPSLAC-------A-AEPSS- 26== RLTPLATIWGSVFAKANSCYNPIVYGISHPRYKAALYQRFPSLAC------GS-GESGS- 27== WVTPYAAELPVLFAKASAIHNPIVYSVSHPKFREAIQTTFPWLLTCCQFDEKE-CEDAN- 28== WVTPYAAQLPVMFAKASAIHNPMIYSVSHPKFREAISQTFPWVLTCCQFDDKE-TEDDK- 29== CIPLWVERTFLWLGYANSLINPFIYAFFNRDLRTTYRSLLQCQYR--------------- 30== CIPLWVERTCLWLGYANSLINPFIYAFFNRDLRPTSRSLLQCQYR--------------- 31=p CIPLWVERTCLWLGYANSLINPFIYAFFNRDLRTTYRSLLQCQYR--------------- 32== HMPTLLGAIINWLGYSNSLLNPVIYAYFNKDFQNAFKKIIKCKFC--------------- 33=p HMPALLGAIINWLGYSNSLLNPVIYAYFNKDFQNAFKKIIKCKFC--------------- 34== GIPPFARSFVLWLGYFNSLLNPIIYTIFSPEFRSAFQKILFGKYR--------------- 35=p GIPPFARSFVLWLGYFNSLLNPIIYTIFSPEFRSAFQKILFGKYR--------------- 36== -VSPVLTSLSLWLGYFNSTLNPVIYTVFSPEFRHAFQRLLCGRRV--------------- 1== -SGASTSKTEVSSVS-TSPVSPA------------------------------------- 2== -ASATASKTE------TSQVAPA------------------------------------- 3== SSTVSQSKTEVSSVS-SSQVSPA------------------------------------- 4=p SSTVSTSKTEVSS------VSPA------------------------------------- 5=p SSTVSTSKTEVSS------VSPA------------------------------------- 6== -ASTSSQVTQVSS------VAPEK------------------------------------ 7== -DTCSSQKTEVSTVS-STQVGPN------------------------------------- 8=opsin, ------------------------------------------------------------ 9== -ELSSASKTEVSSV---SSVSPA------------------------------------- 10== -ELSSASKTEVSSV---SSVSPA------------------------------------- 11== -EASTTSRTEVSSVS-NSSVAPA------------------------------------- 12== -EVST-SRTEVSSVS-NSSVSPA------------------------------------- 13== -PGTPGPHADVTAAGLRNKVMPAHPV---------------------------------- 14== -ESSAVASTSTTQEP--QQTTAA------------------------------------- 15== -ESRAAISTSTTQEQ--QQTTAA------------------------------------- 16== -EISSAQST-TTQEQ--QQTTAA------------------------------------- 17== -EASSAQST-TTQEQ-TQQTSAA------------------------------------- 18== -NDDSQSNSTVAQDK-A------------------------------------------- 19== -VEENQSSNTQTQEK-S------------------------------------------- 20== -SSDAQSQA-TASEA-ESKA---------------------------------------- 21== -SSDAQSQA-TASEA-ESKA---------------------------------------- 22== -SSEAQSQA-TTSEA-ESKA---------------------------------------- 23== -PDAPASDTETTSEA-DSKA---------------------------------------- 24== -PDAPPSDTETTSEA-ESKD---------------------------------------- 25== -DAVSTTSGTTTVTD-NEKSNA-------------------------------------- 26== -DVKSEASATTTMEE-KPKIPEA------------------------------------- 27== -DAEEEVVASER--G-GESRDAAQMKEMMAMMQKMQAQQAAYQPPPPPQGY--PPQGYPP 28== -DAETEIPAGESSDA-APSADAAQMKEMMAMMQKMQQQQAAY----PPQGYAPPPQGYPP 29== -NINRKLSAAGMHEALKLAERPERPEFVL--------QNADY------------------ 30== -NINRKLSAAGMHEALKLAERPERSEFVL--------QNSDH------------------ 31=p -NINRKLSAAGMHEALKLAERPERSEFVL--------QNSDH------------------ 32== -RQ--------------------------------------------------------- 33=p -RR--------------------------------------------------------- 34== -RGHR------------------------------------------------------- 35=p -RGHR------------------------------------------------------- 36== -RRRRA---------------PQ------------------------------------- 1== ---------------------------------------------------- 2== ---------------------------------------------------- 3== ---------------------------------------------------- 4=p ---------------------------------------------------- 5=p ---------------------------------------------------- 6== ---------------------------------------------------- 7== ---------------------------------------------------- 8=opsin, ---------------------------------------------------- 9== ---------------------------------------------------- 10== ---------------------------------------------------- 11== ---------------------------------------------------- 12== ---------------------------------------------------- 13== ---------------------------------------------------- 14== ---------------------------------------------------- 15== ---------------------------------------------------- 16== ---------------------------------------------------- 17== ---------------------------------------------------- 18== ---------------------------------------------------- 19== ---------------------------------------------------- 20== ---------------------------------------------------- 21== ---------------------------------------------------- 22== ---------------------------------------------------- 23== ---------------------------------------------------- 24== ---------------------------------------------------- 25== ---------------------------------------------------- 26== ---------------------------------------------------- 27== QGAYPPPQGYPPQGYPPQGYPPQGYPPQGAPPQVEAPQGAPPQGVDNQAYQA 28== QGY--PPQGYPPQGYPPQGYPP---PPQGAPPQ-GAPPAAPPQGVDNQAYQA 29== ---------------------------------------CRKKGHDS----- 30== ---------------------------------------CGKKGHDT----- 31=p ---------------------------------------CGKKGHDT----- 32== ---------------------------------------------------- 33=p ---------------------------------------------------- 34== ---------------------------------------------------- 35=p ---------------------------------------------------- 36== ----------------------------------------------------