annotate tool_dependencies.xml @ 1:a538bbdae31b draft

planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/metilene commit f332463404ef478e78d3ff4583b806dd68dfd3af-dirty

<?xml version="1.0"?>
<tool_dependency>
    <package name="perl" version="5.18.1">
        <repository changeset_revision="d905bb415eca" name="package_perl_5_18" owner="iuc" toolshed="https://toolshed.g2.bx.psu.edu" />
    </package>
    <package name="R" version="3.2.1">
        <repository changeset_revision="d0bf97420fb5" name="package_r_3_2_1" owner="iuc" toolshed="https://toolshed.g2.bx.psu.edu" />
    </package>
    <package name="bedtools" version="2.24">
        <repository changeset_revision="39b86c1e267d" name="package_bedtools_2_24" owner="iuc" toolshed="https://toolshed.g2.bx.psu.edu" />
    </package>
    <package name="gnu_coreutils" version="8.22">
        <repository changeset_revision="ac64dfe4b1fb" name="package_gnu_coreutils_8_22" owner="iuc" toolshed="https://toolshed.g2.bx.psu.edu" />
    </package>
    <package name="ggplot2" version="0.9.3">
        <repository changeset_revision="07de191649b4" name="package_r_ggplot2_0_9_3" owner="iuc" toolshed="https://toolshed.g2.bx.psu.edu" />
    </package>
    <package name="metilene" version="0.2-4">
        <install version="1.0">
            <actions>
                <action sha256sum="7430b4c2af4f43d389ad690dfe42c9ce7a63b2bff4ff0ac59afc0f1ec7e600f2" type="download_by_url">
                    https://depot.galaxyproject.org/software/metilene/metilene_0.2-4_src_all.tar.gz
                </action>
                <action type="shell_command">make</action>
                <!-- move binary and scripts to installation bin directory -->
                <action type="move_file">
                    <source>metilene</source>
                    <destination>$INSTALL_DIR/bin</destination>
                </action>
                <action type="move_file">
                    <source>metilene_input.pl</source>
                    <destination>$INSTALL_DIR/bin</destination>
                </action>
                <action type="move_file">
                    <source>metilene_output.pl</source>
                    <destination>$INSTALL_DIR/bin</destination>
                </action>
                <action type="move_file">
                    <source>metilene_output.R</source>
                    <destination>$INSTALL_DIR/bin</destination>
                </action>

                <action type="set_environment">
                    <environment_variable action="prepend_to" name="PATH">$INSTALL_DIR/bin</environment_variable>
                </action>
            </actions>
        </install>
        <readme>Metilene is precompiled for Linux</readme>
    </package>
</tool_dependency>