diff test-data/test2_log.txt @ 8:65c38d020fea draft

planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/rna_tools/sortmerna commit 1739cab238d13107d96acd9f87700869fa9d3193-dirty

--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/test-data/test2_log.txt	Sun Sep 24 14:28:47 2017 -0400
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+ Sat Sep 23 09:30:45 2017
+
+ Command: sortmerna --ref /private/var/folders/rp/scmd2sr56nq9cb0x9d_6_49m000dft/T/tmpuYZa_K/files/000/dataset_2.dat,dataset_2 --aligned aligned --reads /private/var/folders/rp/scmd2sr56nq9cb0x9d_6_49m000dft/T/tmpuYZa_K/files/000/dataset_1.dat --log --fastx -e 1.0 --match 2 --mismatch -3 --gap_open 5 --gap_ext 2 -N -3 -a 1 
+ Process pid = 14406
+ Parameters summary:
+    Index: dataset_2
+     Seed length = 18
+     Pass 1 = 18, Pass 2 = 9, Pass 3 = 3
+     Gumbel lambda = 0.605605
+     Gumbel K = 0.332977
+     Minimal SW score based on E-value = 17
+    Number of seeds = 2
+    Edges = 4 (as integer)
+    SW match = 2
+    SW mismatch = -3
+    SW gap open penalty = 5
+    SW gap extend penalty = 2
+    SW ambiguous nucleotide = -3
+    SQ tags are not output
+    Number of threads = 1 (OpenMP is not supported with your current C++ compiler).
+    Reads file = /private/var/folders/rp/scmd2sr56nq9cb0x9d_6_49m000dft/T/tmpuYZa_K/files/000/dataset_1.dat
+
+ Results:
+    Total reads = 1
+    Total reads passing E-value threshold = 1 (100.00%)
+    Total reads failing E-value threshold = 0 (0.00%)
+    Minimum read length = 89
+    Maximum read length = 89
+    Mean read length = 89
+ By database:
+    /private/var/folders/rp/scmd2sr56nq9cb0x9d_6_49m000dft/T/tmpuYZa_K/files/000/dataset_2.dat		100.00%
+
+ Sat Sep 23 09:30:45 2017
+