view test-data/test2_log.txt @ 8:65c38d020fea draft

planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/rna_tools/sortmerna commit 1739cab238d13107d96acd9f87700869fa9d3193-dirty

 Sat Sep 23 09:30:45 2017

 Command: sortmerna --ref /private/var/folders/rp/scmd2sr56nq9cb0x9d_6_49m000dft/T/tmpuYZa_K/files/000/dataset_2.dat,dataset_2 --aligned aligned --reads /private/var/folders/rp/scmd2sr56nq9cb0x9d_6_49m000dft/T/tmpuYZa_K/files/000/dataset_1.dat --log --fastx -e 1.0 --match 2 --mismatch -3 --gap_open 5 --gap_ext 2 -N -3 -a 1 
 Process pid = 14406
 Parameters summary:
    Index: dataset_2
     Seed length = 18
     Pass 1 = 18, Pass 2 = 9, Pass 3 = 3
     Gumbel lambda = 0.605605
     Gumbel K = 0.332977
     Minimal SW score based on E-value = 17
    Number of seeds = 2
    Edges = 4 (as integer)
    SW match = 2
    SW mismatch = -3
    SW gap open penalty = 5
    SW gap extend penalty = 2
    SW ambiguous nucleotide = -3
    SQ tags are not output
    Number of threads = 1 (OpenMP is not supported with your current C++ compiler).
    Reads file = /private/var/folders/rp/scmd2sr56nq9cb0x9d_6_49m000dft/T/tmpuYZa_K/files/000/dataset_1.dat

 Results:
    Total reads = 1
    Total reads passing E-value threshold = 1 (100.00%)
    Total reads failing E-value threshold = 0 (0.00%)
    Minimum read length = 89
    Maximum read length = 89
    Mean read length = 89
 By database:
    /private/var/folders/rp/scmd2sr56nq9cb0x9d_6_49m000dft/T/tmpuYZa_K/files/000/dataset_2.dat		100.00%

 Sat Sep 23 09:30:45 2017