Mercurial > repos > rnateam > splitfasta
comparison splitfasta.xml @ 3:7439ffbd8943 draft
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/hacked/splitFasta commit 9ffd40a178fb3aa8fff618f95d8b3fd7bf58240d
author | rnateam |
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date | Wed, 08 Jul 2015 06:23:46 -0400 |
parents | a9803f1fff75 |
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2:a9803f1fff75 | 3:7439ffbd8943 |
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5 <exit_code range="1:" /> | 5 <exit_code range="1:" /> |
6 </stdio> | 6 </stdio> |
7 | 7 |
8 <command interpreter="python"> | 8 <command interpreter="python"> |
9 <![CDATA[ | 9 <![CDATA[ |
10 splitFasta.py $inputFile; echo 'blah' > blah | 10 splitFasta.py $inputFile |
11 ]]></command> | 11 ]]></command> |
12 <inputs> | 12 <inputs> |
13 <param name="inputFile" type="data" format="txt" label="Fasta file to split"/> | 13 <param name="inputFile" type="data" format="fasta" label="Fasta file to split"/> |
14 <param name="outputFormat" type="select" label="Output Format"> | 14 <param name="outputFormat" type="select" label="Output Format"> |
15 <option value="separate">Separate History Items</option> | 15 <option value="separate">Separate History Items</option> |
16 <option value="collection">Create dataset collection</option> | 16 <option value="collection">Create dataset collection</option> |
17 </param> | 17 </param> |
18 </inputs> | 18 </inputs> |
27 </data> | 27 </data> |
28 </outputs> | 28 </outputs> |
29 <help><![CDATA[ | 29 <help><![CDATA[ |
30 Takes an input file and writes each consecutive two lines to a separate file, in a dataset collection. | 30 Takes an input file and writes each consecutive two lines to a separate file, in a dataset collection. |
31 ]]></help> | 31 ]]></help> |
32 <citations> | |
33 <citation type="bibtex"> | |
34 @ARTICLE{bgruening_galaxytools, | |
35 Author = {Björn Grüning, Cameron Smith, Torsten Houwaart, Nicola Soranzo, Eric Rasche}, | |
36 keywords = {bioinformatics, ngs, galaxy, cheminformatics, rna}, | |
37 title = {{Galaxy Tools - A collection of bioinformatics and cheminformatics tools for the Galaxy environment}}, | |
38 url = {https://github.com/bgruening/galaxytools} | |
39 } | |
40 </citation> | |
41 | |
42 </citations> | |
32 </tool> | 43 </tool> |