Mercurial > repos > rnateam > viennarna_rnaalifold
comparison test-data/Anolis_caro_chrUn_GL343207.trna3_AlaAGC_dp.ps @ 7:b63684e40386 draft default tip
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/rna_tools/vienna_rna commit 36681a08c6e44c663169caaefd964781c43d0d29
author | rnateam |
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date | Wed, 20 Dec 2017 08:29:54 -0500 |
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6:9cc1f04c696b | 7:b63684e40386 |
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1 %!PS-Adobe-3.0 EPSF-3.0 | |
2 %%Title: RNA Dot Plot | |
3 %%Creator: ViennaRNA-2.2.10 | |
4 %%CreationDate: Tue Dec 19 19:42:58 2017 | |
5 %%BoundingBox: 66 211 518 662 | |
6 %%DocumentFonts: Helvetica | |
7 %%Pages: 1 | |
8 %%EndComments | |
9 | |
10 %Options: | |
11 % | |
12 %This file contains the square roots of the base pair probabilities in the form | |
13 % i j sqrt(p(i,j)) ubox | |
14 | |
15 %%BeginProlog | |
16 /DPdict 100 dict def | |
17 DPdict begin | |
18 /logscale false def | |
19 /lpmin 1e-05 log def | |
20 | |
21 /box { %size x y box - draws box centered on x,y | |
22 2 index 0.5 mul sub % x -= 0.5 | |
23 exch 2 index 0.5 mul sub exch % y -= 0.5 | |
24 3 -1 roll dup rectfill | |
25 } bind def | |
26 | |
27 /ubox { | |
28 logscale { | |
29 log dup add lpmin div 1 exch sub dup 0 lt { pop 0 } if | |
30 } if | |
31 3 1 roll | |
32 exch len exch sub 1 add box | |
33 } bind def | |
34 | |
35 /lbox { | |
36 3 1 roll | |
37 len exch sub 1 add box | |
38 } bind def | |
39 | |
40 /drawseq { | |
41 % print sequence along all 4 sides | |
42 [ [0.7 -0.3 0 ] | |
43 [0.7 0.7 len add 0] | |
44 [-0.3 len sub -0.4 -90] | |
45 [-0.3 len sub 0.7 len add -90] | |
46 ] { | |
47 gsave | |
48 aload pop rotate translate | |
49 0 1 len 1 sub { | |
50 dup 0 moveto | |
51 sequence exch 1 getinterval | |
52 show | |
53 } for | |
54 grestore | |
55 } forall | |
56 } bind def | |
57 | |
58 /drawgrid{ | |
59 0.01 setlinewidth | |
60 len log 0.9 sub cvi 10 exch exp % grid spacing | |
61 dup 1 gt { | |
62 dup dup 20 div dup 2 array astore exch 40 div setdash | |
63 } { [0.3 0.7] 0.1 setdash } ifelse | |
64 0 exch len { | |
65 dup dup | |
66 0 moveto | |
67 len lineto | |
68 dup | |
69 len exch sub 0 exch moveto | |
70 len exch len exch sub lineto | |
71 stroke | |
72 } for | |
73 [] 0 setdash | |
74 0.04 setlinewidth | |
75 currentdict /cutpoint known { | |
76 cutpoint 1 sub | |
77 dup dup -1 moveto len 1 add lineto | |
78 len exch sub dup | |
79 -1 exch moveto len 1 add exch lineto | |
80 stroke | |
81 } if | |
82 0.5 neg dup translate | |
83 } bind def | |
84 | |
85 end | |
86 %%EndProlog | |
87 DPdict begin | |
88 %delete next line to get rid of title | |
89 270 665 moveto /Helvetica findfont 14 scalefont setfont (Anolis_caro_chrUn_GL343207.trna3_AlaAGC) show | |
90 | |
91 /sequence { (\ | |
92 GGGGAAUUAGCUCAAAUGGUAGAGCGCUCGCUUAGCAUGCGAGAGGUAGCGGGAUUGAUGCCCGCAUUCUCCA\ | |
93 ) } def | |
94 /len { sequence length } bind def | |
95 | |
96 72 216 translate | |
97 72 6 mul len 1 add div dup scale | |
98 /Helvetica findfont 0.95 scalefont setfont | |
99 | |
100 drawseq | |
101 0.5 dup translate | |
102 % draw diagonal | |
103 0.04 setlinewidth | |
104 0 len moveto len 0 lineto stroke | |
105 | |
106 /min { 2 copy gt { exch } if pop } bind def | |
107 | |
108 /utri{ % i j prob utri | |
109 gsave | |
110 1 min 2 div | |
111 0.85 mul 0.15 add 0.95 0.33 | |
112 3 1 roll % prepare hsb color | |
113 sethsbcolor | |
114 % now produce the coordinates for lines | |
115 exch 1 sub dup len exch sub dup 4 -1 roll dup 3 1 roll dup len exch sub | |
116 moveto lineto lineto closepath fill | |
117 grestore | |
118 } bind def | |
119 /uHmotif{ % i j uHmotif | |
120 gsave | |
121 1 min 2 div | |
122 0.85 mul 0.15 add 0.95 0.99 | |
123 3 1 roll % prepare hsb color | |
124 sethsbcolor | |
125 % now produce the coordinates for lines | |
126 exch 1 sub dup len exch sub dup 4 -1 roll dup 3 1 roll dup len exch sub | |
127 moveto lineto lineto closepath fill | |
128 grestore | |
129 } bind def | |
130 /lHmotif{ % i j lHmotif | |
131 gsave | |
132 1 min 2 div | |
133 0.85 mul 0.15 add 0.95 0.99 | |
134 3 1 roll % prepare hsb color | |
135 sethsbcolor | |
136 % now produce the coordinates for lines | |
137 dup len exch sub dup 4 -1 roll 1 sub dup 3 1 roll dup len exch sub | |
138 moveto lineto lineto closepath fill | |
139 grestore | |
140 } bind def | |
141 /uImotif{ % i j k l uImotif | |
142 gsave | |
143 1 min 2 div | |
144 0.85 mul 0.15 add 0.95 0.99 | |
145 3 1 roll % prepare hsb color | |
146 sethsbcolor | |
147 % now produce the coordinates for lines | |
148 1 sub dup 5 1 roll exch len exch sub dup 5 1 roll 3 -1 roll dup | |
149 5 1 roll exch 4 1 roll 3 1 roll exch 1 sub len exch sub dup 3 1 roll | |
150 moveto lineto lineto lineto closepath fill | |
151 grestore | |
152 } bind def | |
153 /lImotif{ % i j k l lImotif | |
154 gsave | |
155 1 min 2 div | |
156 0.85 mul 0.15 add 0.95 0.99 | |
157 3 1 roll % prepare hsb color | |
158 sethsbcolor | |
159 % now produce the coordinates for lines | |
160 4 -1 roll 1 sub dup 5 1 roll exch 1 sub len exch sub dup 3 -1 roll exch | |
161 5 -1 roll len exch sub dup 6 -1 roll dup 3 1 roll 7 4 roll | |
162 moveto lineto lineto lineto closepath fill | |
163 grestore | |
164 } bind def | |
165 | |
166 %data starts here | |
167 | |
168 %start of quadruplex data | |
169 | |
170 %start of Hmotif data | |
171 | |
172 %start of Imotif data | |
173 | |
174 %draw the grid | |
175 drawgrid | |
176 | |
177 %start of base pair probability data | |
178 1 71 0.011137621 ubox | |
179 1 72 0.998618513 ubox | |
180 2 70 0.011249479 ubox | |
181 2 71 0.999343269 ubox | |
182 2 72 0.029380302 ubox | |
183 3 69 0.016278852 ubox | |
184 3 70 0.998657995 ubox | |
185 3 71 0.029349731 ubox | |
186 3 72 0.013044031 ubox | |
187 4 68 0.015570075 ubox | |
188 4 69 0.999660285 ubox | |
189 4 70 0.006500567 ubox | |
190 4 71 0.013063530 ubox | |
191 5 67 0.017184802 ubox | |
192 5 68 0.995393993 ubox | |
193 5 70 0.012116272 ubox | |
194 6 20 0.003683136 ubox | |
195 6 47 0.007871866 ubox | |
196 6 67 0.961997835 ubox | |
197 6 68 0.010641824 ubox | |
198 7 19 0.003963646 ubox | |
199 7 22 0.016669769 ubox | |
200 7 23 0.006395271 ubox | |
201 7 26 0.010803708 ubox | |
202 7 45 0.003325342 ubox | |
203 7 46 0.008388346 ubox | |
204 7 66 0.889354167 ubox | |
205 8 18 0.004993356 ubox | |
206 8 21 0.043576199 ubox | |
207 8 22 0.009051039 ubox | |
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222 10 61 0.005362683 ubox | |
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347 1 72 0.9500000 lbox | |
348 2 71 0.9500000 lbox | |
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367 53 61 0.9500000 lbox | |
368 showpage | |
369 end | |
370 %%EOF |