Mercurial > repos > rnateam > viennarna_rnaeval
view test-data/Anolis_caro_chrUn_GL343590.trna2_AlaAGC_dp.ps @ 7:4f1a37b08904 draft default tip
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/rna_tools/vienna_rna commit 36681a08c6e44c663169caaefd964781c43d0d29
author | rnateam |
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date | Wed, 20 Dec 2017 08:31:22 -0500 |
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%!PS-Adobe-3.0 EPSF-3.0 %%Title: RNA Dot Plot %%Creator: ViennaRNA-2.2.10 %%CreationDate: Tue Dec 19 19:42:58 2017 %%BoundingBox: 66 211 518 662 %%DocumentFonts: Helvetica %%Pages: 1 %%EndComments %Options: % %This file contains the square roots of the base pair probabilities in the form % i j sqrt(p(i,j)) ubox %%BeginProlog /DPdict 100 dict def DPdict begin /logscale false def /lpmin 1e-05 log def /box { %size x y box - draws box centered on x,y 2 index 0.5 mul sub % x -= 0.5 exch 2 index 0.5 mul sub exch % y -= 0.5 3 -1 roll dup rectfill } bind def /ubox { logscale { log dup add lpmin div 1 exch sub dup 0 lt { pop 0 } if } if 3 1 roll exch len exch sub 1 add box } bind def /lbox { 3 1 roll len exch sub 1 add box } bind def /drawseq { % print sequence along all 4 sides [ [0.7 -0.3 0 ] [0.7 0.7 len add 0] [-0.3 len sub -0.4 -90] [-0.3 len sub 0.7 len add -90] ] { gsave aload pop rotate translate 0 1 len 1 sub { dup 0 moveto sequence exch 1 getinterval show } for grestore } forall } bind def /drawgrid{ 0.01 setlinewidth len log 0.9 sub cvi 10 exch exp % grid spacing dup 1 gt { dup dup 20 div dup 2 array astore exch 40 div setdash } { [0.3 0.7] 0.1 setdash } ifelse 0 exch len { dup dup 0 moveto len lineto dup len exch sub 0 exch moveto len exch len exch sub lineto stroke } for [] 0 setdash 0.04 setlinewidth currentdict /cutpoint known { cutpoint 1 sub dup dup -1 moveto len 1 add lineto len exch sub dup -1 exch moveto len 1 add exch lineto stroke } if 0.5 neg dup translate } bind def end %%EndProlog DPdict begin %delete next line to get rid of title 270 665 moveto /Helvetica findfont 14 scalefont setfont (Anolis_caro_chrUn_GL343590.trna2_AlaAGC) show /sequence { (\ UGGGAAUUAGCUCAAAUGGUAGAGCGCUCGCUUAGCAUGUGAGAGGUAGUGGGAUCGAUGCCCACAUUCUCCA\ ) } def /len { sequence length } bind def 72 216 translate 72 6 mul len 1 add div dup scale /Helvetica findfont 0.95 scalefont setfont drawseq 0.5 dup translate % draw diagonal 0.04 setlinewidth 0 len moveto len 0 lineto stroke /min { 2 copy gt { exch } if pop } bind def /utri{ % i j prob utri gsave 1 min 2 div 0.85 mul 0.15 add 0.95 0.33 3 1 roll % prepare hsb color sethsbcolor % now produce the coordinates for lines exch 1 sub dup len exch sub dup 4 -1 roll dup 3 1 roll dup len exch sub moveto lineto lineto closepath fill grestore } bind def /uHmotif{ % i j uHmotif gsave 1 min 2 div 0.85 mul 0.15 add 0.95 0.99 3 1 roll % prepare hsb color sethsbcolor % now produce the coordinates for lines exch 1 sub dup len exch sub dup 4 -1 roll dup 3 1 roll dup len exch sub moveto lineto lineto closepath fill grestore } bind def /lHmotif{ % i j lHmotif gsave 1 min 2 div 0.85 mul 0.15 add 0.95 0.99 3 1 roll % prepare hsb color sethsbcolor % now produce the coordinates for lines dup len exch sub dup 4 -1 roll 1 sub dup 3 1 roll dup len exch sub moveto lineto lineto closepath fill grestore } bind def /uImotif{ % i j k l uImotif gsave 1 min 2 div 0.85 mul 0.15 add 0.95 0.99 3 1 roll % prepare hsb color sethsbcolor % now produce the coordinates for lines 1 sub dup 5 1 roll exch len exch sub dup 5 1 roll 3 -1 roll dup 5 1 roll exch 4 1 roll 3 1 roll exch 1 sub len exch sub dup 3 1 roll moveto lineto lineto lineto closepath fill grestore } bind def /lImotif{ % i j k l lImotif gsave 1 min 2 div 0.85 mul 0.15 add 0.95 0.99 3 1 roll % prepare hsb color sethsbcolor % now produce the coordinates for lines 4 -1 roll 1 sub dup 5 1 roll exch 1 sub len exch sub dup 3 -1 roll exch 5 -1 roll len exch sub dup 6 -1 roll dup 3 1 roll 7 4 roll moveto lineto lineto lineto closepath fill grestore } bind def %data starts here %start of quadruplex data %start of Hmotif data %start of Imotif data %draw the grid drawgrid %start of base pair probability data 1 6 0.004632238 ubox 1 9 0.006654223 ubox 1 14 0.116131258 ubox 1 15 0.005506901 ubox 1 30 0.009716645 ubox 1 34 0.073740324 ubox 1 37 0.006701873 ubox 1 64 0.004871484 ubox 1 73 0.570925214 ubox 2 8 0.007083382 ubox 2 11 0.008406236 ubox 2 12 0.007044803 ubox 2 13 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