Mercurial > repos > romaingred > pirna_pipeline

comparison piPipe.xml @ 13:98b4a5ec8e63 draft

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author romaingred
date Mon, 16 Oct 2017 03:34:16 -0400
parents a888c001f08e
children 2be918bf0efe
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12:eec6ce306605 13:98b4a5ec8e63
214 <param name="mis" type="integer" value="0" label="genome mismatches"/> 214 <param name="mis" type="integer" value="0" label="genome mismatches"/>
215 <param name="misTE" type="integer" value="3" label="TE mismatches"/> 215 <param name="misTE" type="integer" value="3" label="TE mismatches"/>
216 <param name="PPPon" type="boolean" checked="true" label="PPPartners"/> 216 <param name="PPPon" type="boolean" checked="true" label="PPPartners"/>
217 </inputs> 217 </inputs>
218 <outputs> 218 <outputs>
219 <data format="html" name="html_out" label="${tool.name}_${first_input.name}_${on_string}"/> 219 <data format="html" name="html_out" label="${tool.name}_${first_input.name}_${on_string}"/>
220 220
221 <collection type="list" label="${tool.name}_fastq_outputs" name="output1"> 221 <collection format ="fastqsanger" type="list" label="${tool.name}_fastq_outputs" name="output_fastqsanger">
222 <discover_datasets pattern="(?P&lt;name&gt;.*)" directory="fastq_dir" /> 222 <discover_datasets ftype ="fastqsanger" pattern="(?P&lt;name&gt;.*)" directory="fastq_dir" />
223 </collection> 223 </collection>
224 224
225 </outputs> 225 </outputs>
226 </tool> 226 </tool>