Mercurial > repos > romaingred > pirna_pipeline

diff piPipe.xml @ 13:98b4a5ec8e63 draft

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Uploaded
author romaingred
date Mon, 16 Oct 2017 03:34:16 -0400
parents a888c001f08e
children 2be918bf0efe
line wrap: on
line diff
--- a/piPipe.xml	Mon Oct 16 03:33:55 2017 -0400
+++ b/piPipe.xml	Mon Oct 16 03:34:16 2017 -0400
@@ -216,10 +216,10 @@
     <param name="PPPon" type="boolean" checked="true" label="PPPartners"/>
   </inputs>
   <outputs>
-    <data format="html" name="html_out" label="${tool.name}_${first_input.name}_${on_string}"/>
+    <data  format="html" name="html_out" label="${tool.name}_${first_input.name}_${on_string}"/>
 
-       <collection type="list" label="${tool.name}_fastq_outputs" name="output1">
-            <discover_datasets pattern="(?P&lt;name&gt;.*)" directory="fastq_dir" />
+       <collection format ="fastqsanger" type="list" label="${tool.name}_fastq_outputs" name="output_fastqsanger">
+            <discover_datasets ftype ="fastqsanger" pattern="(?P&lt;name&gt;.*)" directory="fastq_dir" />
         </collection>
 
   </outputs>