Mercurial > repos > romaingred > pirna_pipeline
diff bin/piPipe.pl @ 47:851c8bbb3214 draft
Uploaded
| author | romaingred |
|---|---|
| date | Fri, 01 Dec 2017 08:48:57 -0500 |
| parents | 0be8011b3d98 |
| children | 71ac58e0d5be |
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--- a/bin/piPipe.pl Fri Dec 01 08:14:22 2017 -0500 +++ b/bin/piPipe.pl Fri Dec 01 08:48:57 2017 -0500 @@ -119,8 +119,8 @@ my $fastq_resized = $dir_fq.$name.'_'.$min.'-'.$max.'.fastq'; size_distribution ( $fastq[$child], $fastq_resized, $size_dir, $min, $max ); - my $sam_genome = $gen_dir.$fastq_n[$child].'_'.$min.'-'.$max.'_'.$ref_name.'.sam'; - my $sam_genome_unique = $gen_dir.$fastq_n[$child].'_'.$min.'-'.$max.'_'.$ref_name.'_unique.sam'; + my $sam_genome = $gen_dir.$fastq_n[$child].'_'.$min.'-'.max.'sam'; + my $sam_genome_unique = $gen_dir.$fastq_n[$child].'_'.$min.'-'.$max.'_unique.sam'; my $fastq_prefix = $gen_dir.$fastq_n[$child].'_'.$min.'-'.$max; BWA_call ( $ref, $fastq_resized, $sam_genome, $mis, $proc_child, $report );