Mercurial > repos > romaingred > pirna_pipeline

changeset 47:851c8bbb3214 draft

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Uploaded
author romaingred
date Fri, 01 Dec 2017 08:48:57 -0500
parents a03408665904
children 6936e45f6c80
files bin/piPipe.pl
diffstat 1 files changed, 2 insertions(+), 2 deletions(-) [+]
line wrap: on
line diff
--- a/bin/piPipe.pl	Fri Dec 01 08:14:22 2017 -0500
+++ b/bin/piPipe.pl	Fri Dec 01 08:48:57 2017 -0500
@@ -119,8 +119,8 @@
 	my $fastq_resized = $dir_fq.$name.'_'.$min.'-'.$max.'.fastq';
 	size_distribution (  $fastq[$child], $fastq_resized, $size_dir, $min, $max );
 
-	my $sam_genome = $gen_dir.$fastq_n[$child].'_'.$min.'-'.$max.'_'.$ref_name.'.sam';
-	my $sam_genome_unique = $gen_dir.$fastq_n[$child].'_'.$min.'-'.$max.'_'.$ref_name.'_unique.sam';
+	my $sam_genome = $gen_dir.$fastq_n[$child].'_'.$min.'-'.max.'sam';
+	my $sam_genome_unique = $gen_dir.$fastq_n[$child].'_'.$min.'-'.$max.'_unique.sam';
 	my $fastq_prefix = $gen_dir.$fastq_n[$child].'_'.$min.'-'.$max;
 
 	BWA_call ( $ref, $fastq_resized, $sam_genome, $mis, $proc_child, $report );