Mercurial > repos > romaingred > pirna_pipeline
changeset 37:af4ee65eaffb draft
Uploaded
| author | romaingred |
|---|---|
| date | Tue, 28 Nov 2017 10:05:52 -0500 |
| parents | dfe259eb1e6b |
| children | 15fbf3bdb553 |
| files | bin/piPipe.pl |
| diffstat | 1 files changed, 2 insertions(+), 2 deletions(-) [+] |
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--- a/bin/piPipe.pl Tue Nov 28 09:24:35 2017 -0500 +++ b/bin/piPipe.pl Tue Nov 28 10:05:52 2017 -0500 @@ -203,7 +203,7 @@ extract_sam ( $type_sequence_hashP, $sam_genome, $type_sam_genome, $type_sam_uni_genome, $type_genome_fastq, $type_uni_genome_fastq ); } - my $ex_count_file = $type_dir.'transcripts_reads_counts.txt'; + my $ex_count_file = $type_dir.$type_prefix.'transcripts_reads_counts.txt'; my ( $ex_count, $ex_ref_size ) = sam_count ( $type_sam_transcripts ); rpms_rpkm( $ex_count, $ex_ref_size, $ma, $ex_count_file, $pi, $mi, $bo ); @@ -253,7 +253,7 @@ #HTML Main Webpage my $index_page = $dir.$fastq_n[$child].'.html'; - main_page ( $gen_dir, $index_page, \@fastq_n, $fastq_n[$child], $ma, $ma_uni, $dir ); + main_page ( $gen_dir, $index_page, \@fastq_n, $fastq_n[$child], $ma, $ma_uni, $dir ); copy ($index_page, $html_out) if $child == 0; #HTML Menu my $menu_page = $dir.$fastq_n[$child].'-sub.html';