annotate tool_dependencies.xml @ 0:48f412c4d0c9 draft

planemo upload

<?xml version="1.0"?>
<tool_dependency>
    <package name="humann2" version="0.6.1">
        <install version="1.0">
            <actions>
                <action type="download_by_url" md5sum="fae7549ac333b973badf7e99805d50d1">https://bitbucket.org/biobakery/humann2/get/0.6.1.tar.gz</action>
                <action type="make_directory">$INSTALL_DIR/lib/python</action>
                <action type="shell_command">
                    export PYTHONPATH=$PYTHONPATH:$INSTALL_DIR/lib/python &amp;&amp;
                    python setup.py install --bypass-dependencies-install --install-lib $INSTALL_DIR/lib/python --install-scripts=$INSTALL_DIR/</action>
                <action type="make_directory">$INSTALL_DIR/databases</action>
                <action type="set_environment">
                    <environment_variable action="prepend_to" name="PYTHONPATH">$INSTALL_DIR/lib/python</environment_variable>
                    <environment_variable name="HUMANN2_DIR" action="set_to">$INSTALL_DIR/</environment_variable>
                    <environment_variable name="PATH" action="prepend_to">$INSTALL_DIR/</environment_variable>
                </action>
            </actions>
        </install>
        <readme></readme>
    </package>
</tool_dependency>