0
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1 all: SNVMix2-devel
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2
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3 SNVMix2-devel.o: SNVMix2.c SNVMix2.h
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4 gcc -O2 -Isamtools-0.1.6/ -o SNVMix2-devel.o -c SNVMix2.c -funroll-loops
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5
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6 SNVMix2-devel: SNVMix2-devel.o $(LOBJS)
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7 gcc -O2 -Isamtools-0.1.6/ -Lsamtools-0.1.6/ -lbam -lm -lz SNVMix2-devel.o $(LOBJS) -o SNVMix2-devel
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8
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9
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10 clean:
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11 rm -f SNVMix2-devel SNVMix2-devel.o
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12
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13
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14 LOBJS= samtools-0.1.6/bgzf.o samtools-0.1.6/kstring.o samtools-0.1.6/bam_aux.o samtools-0.1.6/bam.o samtools-0.1.6/bam_import.o samtools-0.1.6/sam.o samtools-0.1.6/bam_index.o\
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15 samtools-0.1.6/bam_pileup.o samtools-0.1.6/bam_lpileup.o samtools-0.1.6/bam_md.o samtools-0.1.6/glf.o samtools-0.1.6/razf.o samtools-0.1.6/faidx.o samtools-0.1.6/knetfile.o\
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16 samtools-0.1.6/bam_sort.o
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17
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