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diff SNV/SNVMix2_source/SNVMix2-v0.12.1-rc1/Makefile @ 0:74f5ea818cea

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author ryanmorin
date Wed, 12 Oct 2011 19:50:38 -0400
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--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/SNV/SNVMix2_source/SNVMix2-v0.12.1-rc1/Makefile	Wed Oct 12 19:50:38 2011 -0400
@@ -0,0 +1,17 @@
+all: SNVMix2-devel
+
+SNVMix2-devel.o: SNVMix2.c SNVMix2.h
+	gcc -O2 -Isamtools-0.1.6/ -o SNVMix2-devel.o -c SNVMix2.c -funroll-loops
+
+SNVMix2-devel: SNVMix2-devel.o $(LOBJS)
+	gcc -O2 -Isamtools-0.1.6/ -Lsamtools-0.1.6/ -lbam -lm -lz  SNVMix2-devel.o $(LOBJS) -o SNVMix2-devel
+
+
+clean:
+	rm -f SNVMix2-devel SNVMix2-devel.o
+
+
+LOBJS= samtools-0.1.6/bgzf.o samtools-0.1.6/kstring.o samtools-0.1.6/bam_aux.o samtools-0.1.6/bam.o samtools-0.1.6/bam_import.o samtools-0.1.6/sam.o samtools-0.1.6/bam_index.o\
+	samtools-0.1.6/bam_pileup.o samtools-0.1.6/bam_lpileup.o samtools-0.1.6/bam_md.o samtools-0.1.6/glf.o samtools-0.1.6/razf.o samtools-0.1.6/faidx.o samtools-0.1.6/knetfile.o\
+	samtools-0.1.6/bam_sort.o
+