Mercurial > repos > ryanmorin > nextgen_variant_identification
comparison SNV/SNVMix2_source/SNVMix2-v0.12.1-rc1/Makefile @ 0:74f5ea818cea
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| author | ryanmorin |
|---|---|
| date | Wed, 12 Oct 2011 19:50:38 -0400 |
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| children |
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| -1:000000000000 | 0:74f5ea818cea |
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| 1 all: SNVMix2-devel | |
| 2 | |
| 3 SNVMix2-devel.o: SNVMix2.c SNVMix2.h | |
| 4 gcc -O2 -Isamtools-0.1.6/ -o SNVMix2-devel.o -c SNVMix2.c -funroll-loops | |
| 5 | |
| 6 SNVMix2-devel: SNVMix2-devel.o $(LOBJS) | |
| 7 gcc -O2 -Isamtools-0.1.6/ -Lsamtools-0.1.6/ -lbam -lm -lz SNVMix2-devel.o $(LOBJS) -o SNVMix2-devel | |
| 8 | |
| 9 | |
| 10 clean: | |
| 11 rm -f SNVMix2-devel SNVMix2-devel.o | |
| 12 | |
| 13 | |
| 14 LOBJS= samtools-0.1.6/bgzf.o samtools-0.1.6/kstring.o samtools-0.1.6/bam_aux.o samtools-0.1.6/bam.o samtools-0.1.6/bam_import.o samtools-0.1.6/sam.o samtools-0.1.6/bam_index.o\ | |
| 15 samtools-0.1.6/bam_pileup.o samtools-0.1.6/bam_lpileup.o samtools-0.1.6/bam_md.o samtools-0.1.6/glf.o samtools-0.1.6/razf.o samtools-0.1.6/faidx.o samtools-0.1.6/knetfile.o\ | |
| 16 samtools-0.1.6/bam_sort.o | |
| 17 |