Mercurial > repos > ryanmorin > nextgen_variant_identification

diff tool_conf.xml.sample @ 5:a4975ec34575

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author ryanmorin
date Mon, 17 Oct 2011 14:57:09 -0400
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--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/tool_conf.xml.sample	Mon Oct 17 14:57:09 2011 -0400
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+#add the following section to your file to enable these tools
+ <section name="NGS: Variant Calling" id="SNV">
+ <label text="SNV pipeline" id="SNV" />
+    <tool file="SNV/snvmix.xml" />
+    <tool file="SNV/snvmix2.xml" />
+    <tool file="SNV/filter_snvmix.xml" />
+    <tool file="SNV/snp_filters.xml" />
+    <tool file="SNV/annotate.xml" />
+    <tool file="SNV/filter_snvmix_somatic.xml" />
+  </section>
+