Mercurial > repos > saharlcc > isoem2_isode2

annotate IsoEM.loc.sample @ 8:dc8efad9c31b draft

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author saharlcc
date Mon, 19 Sep 2016 22:09:41 -0400
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1 #This file has file paths for the GTF, cluster file and tmap and hisat2 indices for IsoEM2
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3 #NOTE: All entries in this file MUST be tab-delimited
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5 #Every entry has the following 5 fields:
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6 #Reference name <GTF> <TMAP_INDEX> <HISAT2_INDEX> <Cluster file>
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10 mm10-RefSeq77 /import1/GTF/mm10RefSeq77UCSCAug29-2016.gtf /import1/tmap-index/tmap3.4.1/mm10-RefSeq77/mm10RefSeq77UCSCAug29-2016GTF-polyA200.fasta /import1/hisat2-index/mm10-RefSeq77/mm10RefSeq77UCSCAug29-2016GTF-polyA200.fasta /import1/GTF/mm10RefSeq77UCSCAug29-2016_TranscriptIDGeneName.txt
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11 hg38-RefSeq77 /import1/GTF/hg38RefSeq77UCSCAug29-2016.gtf /import1/tmap-index/tmap3.4.1/hg38-RefSeq77/hg38RefSeq77UCSCAug29-2016GTF-polyA200.fasta /import1/hisat2-index/hg38-RefSeq77/hg38RefSeq77UCSCAug29-2016GTF-polyA200.fasta /import1/GTF/hg38RefSeq77UCSCAug29-2016_TranscriptIDGeneName.txt
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