Mercurial > repos > saharlcc > isoem2_isode2

diff IsoEM.loc.sample @ 7:aa9875d90894 draft

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author saharlcc
date Mon, 19 Sep 2016 22:09:12 -0400
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--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/IsoEM.loc.sample	Mon Sep 19 22:09:12 2016 -0400
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+#This file has file paths for the GTF, cluster file and tmap and hisat2  indices for IsoEM2 
+
+#NOTE: All entries in this file MUST be tab-delimited
+
+#Every entry has the following 5 fields:
+#Reference name	<GTF>	<TMAP_INDEX> <HISAT2_INDEX> <Cluster file>
+
+
+
+mm10-RefSeq77	/import1/GTF/mm10RefSeq77UCSCAug29-2016.gtf	/import1/tmap-index/tmap3.4.1/mm10-RefSeq77/mm10RefSeq77UCSCAug29-2016GTF-polyA200.fasta	/import1/hisat2-index/mm10-RefSeq77/mm10RefSeq77UCSCAug29-2016GTF-polyA200.fasta	/import1/GTF/mm10RefSeq77UCSCAug29-2016_TranscriptIDGeneName.txt
+hg38-RefSeq77	/import1/GTF/hg38RefSeq77UCSCAug29-2016.gtf	/import1/tmap-index/tmap3.4.1/hg38-RefSeq77/hg38RefSeq77UCSCAug29-2016GTF-polyA200.fasta	/import1/hisat2-index/hg38-RefSeq77/hg38RefSeq77UCSCAug29-2016GTF-polyA200.fasta	/import1/GTF/hg38RefSeq77UCSCAug29-2016_TranscriptIDGeneName.txt
+	
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