Mercurial > repos > saharlcc > isoem2_isode2

comparison IsoEM.loc.sample @ 7:aa9875d90894 draft

Find changesets by keywords (author, files, the commit message), revision number or hash, or revset expression.
Uploaded
author saharlcc
date Mon, 19 Sep 2016 22:09:12 -0400
parents
children
comparison
equal deleted inserted replaced
6:bfae83dedd4c 7:aa9875d90894
1 #This file has file paths for the GTF, cluster file and tmap and hisat2 indices for IsoEM2
2
3 #NOTE: All entries in this file MUST be tab-delimited
4
5 #Every entry has the following 5 fields:
6 #Reference name <GTF> <TMAP_INDEX> <HISAT2_INDEX> <Cluster file>
7
8
9
10 mm10-RefSeq77 /import1/GTF/mm10RefSeq77UCSCAug29-2016.gtf /import1/tmap-index/tmap3.4.1/mm10-RefSeq77/mm10RefSeq77UCSCAug29-2016GTF-polyA200.fasta /import1/hisat2-index/mm10-RefSeq77/mm10RefSeq77UCSCAug29-2016GTF-polyA200.fasta /import1/GTF/mm10RefSeq77UCSCAug29-2016_TranscriptIDGeneName.txt
11 hg38-RefSeq77 /import1/GTF/hg38RefSeq77UCSCAug29-2016.gtf /import1/tmap-index/tmap3.4.1/hg38-RefSeq77/hg38RefSeq77UCSCAug29-2016GTF-polyA200.fasta /import1/hisat2-index/hg38-RefSeq77/hg38RefSeq77UCSCAug29-2016GTF-polyA200.fasta /import1/GTF/hg38RefSeq77UCSCAug29-2016_TranscriptIDGeneName.txt
12