Mercurial > repos > saharlcc > isoem2_isode2

changeset 16:72e55a2c0bbf draft

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Bug fix in output files headers
author saharlcc
date Mon, 03 Apr 2017 17:58:38 -0400
parents 491a5e3e4b78
children 40e893e4a37f
files isoem2_isode2/isoDE2.sh
diffstat 1 files changed, 4 insertions(+), 4 deletions(-) [+]
line wrap: on
line diff
--- a/isoem2_isode2/isoDE2.sh	Mon Apr 03 17:55:43 2017 -0400
+++ b/isoem2_isode2/isoDE2.sh	Mon Apr 03 17:58:38 2017 -0400
@@ -141,7 +141,7 @@
 date
 
 
-awk '{if (NR == 1) {print "Gene ID\tConservative log2 FC\t Single run log2 FC\t c1 average FPKM\tc2 average FPKM";} else {if ($6 == 0 && $7 == 0) {two="0";} else {two=$2;} print $1 "\t" two "\t"  $5 "\t" $6 "\t" $7}}' Bootstrap_Merge1_DIR/output.txt > ${geneFPKMout_file}
+awk '{if (NR == 1) {print "Gene ID\tConfident log2 FC\t Single run log2 FC\t c1 average FPKM\tc2 average FPKM";} else {if ($6 == 0 && $7 == 0) {two="0";} else {two=$2;} print $1 "\t" two "\t"  $5 "\t" $6 "\t" $7}}' Bootstrap_Merge1_DIR/output.txt > ${geneFPKMout_file}
 
 cd ..
 
@@ -164,7 +164,7 @@
 echo awk command
 date
 pwd
-awk '{if (NR == 1) {print "Isoform ID\tConservative log2 FC\t Single run log2 FC\t c1 average FPKM\tc2 average FPKM";} else {if ($6 == 0 && $7 == 0) {two="0";} else {two=$2;} print $1 "\t" two "\t"  $5 "\t" $6 "\t" $7}}' Bootstrap_Merge1_DIR/output.txt  > ${isoFPKMout_file}
+awk '{if (NR == 1) {print "Isoform ID\tConfident log2 FC\t Single run log2 FC\t c1 average FPKM\tc2 average FPKM";} else {if ($6 == 0 && $7 == 0) {two="0";} else {two=$2;} print $1 "\t" two "\t"  $5 "\t" $6 "\t" $7}}' Bootstrap_Merge1_DIR/output.txt  > ${isoFPKMout_file}
 cd ..
 
 
@@ -184,7 +184,7 @@
 echo awk command
 date
 pwd
-awk '{if (NR == 1) {print "Gene ID\tConservative log2 FC\t Single run log2 FC\t c1 average TPM\tc2 average TPM";} else {if ($6 == 0 && $7 == 0) {two="0";} else {two=$2;} print $1 "\t" two "\t"  $5 "\t" $6 "\t" $7}}'  Bootstrap_Merge1_DIR/output.txt  > ${geneTPMout_file}
+awk '{if (NR == 1) {print "Gene ID\tConfident log2 FC\t Single run log2 FC\t c1 average TPM\tc2 average TPM";} else {if ($6 == 0 && $7 == 0) {two="0";} else {two=$2;} print $1 "\t" two "\t"  $5 "\t" $6 "\t" $7}}'  Bootstrap_Merge1_DIR/output.txt  > ${geneTPMout_file}
 cd ..
 
 
@@ -204,7 +204,7 @@
 echo awk command
 date
 
-awk '{if (NR == 1) {print "Conservative Isoform ID\tConfident log2 FC\t Single run log2 FC\t c1 average TPM\tc2 average TPM";} else {if ($6 == 0 && $7 == 0) {two="0";} else {two=$2;} print $1 "\t" two "\t"  $5 "\t" $6 "\t" $7}}'  Bootstrap_Merge1_DIR/output.txt  > ${isoTPMout_file}
+awk '{if (NR == 1) {print "Isoform ID\tConfident log2 FC\t Single run log2 FC\t c1 average TPM\tc2 average TPM";} else {if ($6 == 0 && $7 == 0) {two="0";} else {two=$2;} print $1 "\t" two "\t"  $5 "\t" $6 "\t" $7}}'  Bootstrap_Merge1_DIR/output.txt  > ${isoTPMout_file}
 
 cd ..