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author saket-choudhary
date Tue, 07 Oct 2014 19:25:07 -0400
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+++ b/fathmm/README.rst	Tue Oct 07 19:25:07 2014 -0400
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+Galaxy wrapper for the FATHMM webservice 
+===================================================
+
+This tool is copyright 2014 by Saket Choudhary<saketkc@gmail.com>, Indian Institute of Technology Bombay
+All rights reserved. MIT licensed.
+
+Licence (MIT)
+=============
+
+Permission is hereby granted, free of charge, to any person obtaining a copy
+of this software and associated documentation files (the "Software"), to deal
+in the Software without restriction, including without limitation the rights
+to use, copy, modify, merge, publish, distribute, sublicense, and/or sell
+copies of the Software, and to permit persons to whom the Software is
+furnished to do so, subject to the following conditions:
+
+The above copyright notice and this permission notice shall be included in
+all copies or substantial portions of the Software.
+
+THE SOFTWARE IS PROVIDED "AS IS", WITHOUT WARRANTY OF ANY KIND, EXPRESS OR
+IMPLIED, INCLUDING BUT NOT LIMITED TO THE WARRANTIES OF MERCHANTABILITY,
+FITNESS FOR A PARTICULAR PURPOSE AND NONINFRINGEMENT. IN NO EVENT SHALL THE
+AUTHORS OR COPYRIGHT HOLDERS BE LIABLE FOR ANY CLAIM, DAMAGES OR OTHER
+LIABILITY, WHETHER IN AN ACTION OF CONTRACT, TORT OR OTHERWISE, ARISING FROM,
+OUT OF OR IN CONNECTION WITH THE SOFTWARE OR THE USE OR OTHER DEALINGS IN
+THE SOFTWARE.
+
+Citations
+===========
+
+
+    If you use this tool in Galaxy, please cite :
+
+        Shihab HA, Gough J, Cooper DN, Stenson PD, Barker GLA, Edwards KJ, Day INM, Gaunt, TR. (2013).
+        Predicting the Functional, Molecular and PhenotypicConsequences of Amino Acid Substitutions using
+        Hidden Markov Models. Hum. Mutat., 34:57-65
+
+        
+        Shihab HA, Gough J, Cooper DN, Day INM, Gaunt, TR. (2013). Predicting the Functional Consequences
+        of Cancer-Associated Amino Acid Substitutions. Bioinformatics 29:1504-1510.
+
+        
+        Shihab HA, Gough J, Mort M, Cooper DN, Day INM, Gaunt, TR. (2014).
+        Ranking Non-Synonymous Single Nucleotide Polymorphisms based on Disease Concepts. In Press