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comparison galaxy_semwebtools @ 4:ee072a7d271b draft

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author saml
date Wed, 21 Nov 2012 12:53:24 -0500
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169 <h1><a class="repo-link" href="/saml/galaxy_semwebtools">galaxy_semwebtools</a></h1>
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350
351
352
353 <section id="readme">
354
355 <article class="readme file">
356 <h1 id="semantic-web-tools-for-galaxy">Semantic Web Tools for Galaxy</h1>
357 <h2 id="sparql-import-tool">SPARQL Import tool</h2>
358 <p>This <a href="http://galaxyproject.org/">Galaxy (bioinformatics web portal)</a> toolkit currently just contains a tool that enables to specify an URL to a SPARQL endpoint, and a SPARQL query, and to save the returned data in tabular format, for further processing in Galaxy's tools.</p>
359 <h2 id="installation">Installation</h2>
360 <ol>
361 <li>Create a folder "semweb_tools" under [galaxy_root]/tools/ and add these files.</li>
362 <li>Add the following section right under the starting &amp;lt;toolbox&amp;gt; tag in [galaxy_root]/tool_conf.xml:</li>
363 </ol>
364 <div class="codehilite"><pre> <span class="nt">&lt;section</span> <span class="na">name=</span><span class="s">&quot;Semantic Web Tools&quot;</span> <span class="na">id=</span><span class="s">&quot;semweb_tools&quot;</span><span class="nt">&gt;</span>
365 <span class="nt">&lt;tool</span> <span class="na">file=</span><span class="s">&quot;semweb_tools/sparql_import.xml&quot;</span> <span class="nt">/&gt;</span>
366 <span class="nt">&lt;/section&gt;</span>
367 </pre></div>
368
369
370 <h2 id="change-log">Change log</h2>
371 <ul>
372 <li>2012-11-16: Now works properly (at least for my simple test case)!</li>
373 <li>2012-11-16: Created today, still under heavy development!</li>
374 </ul>
375 </article>
376
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378
379
380
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382 <h1>
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399
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402
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404 <article class="news-item commit">
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406
407
408
409 <a href="/saml"><img alt="Samuel Lampa" src="https://secure.gravatar.com/avatar/87d770f5a0843a130b55572651e9d7d0?d=https%3A%2F%2Fdwz7u9t8u8usb.cloudfront.net%2Fm%2F2219cd120e6a%2Fimg%2Fdefault_avatar%2F32%2Fuser_blue.png&amp;s=32" class="avatar avatar32" /></a>
410
411
412 <p>
413
414
415 <a href="/saml">Samuel Lampa</a>
416
417 committed to
418
419
420 <a href="/saml/galaxy_semwebtools" title="saml/galaxy_semwebtools">saml/galaxy_semwebtools</a>
421
422
423 </p>
424 <time datetime="2012-11-21T17:52:02+00:00">a minute ago</time>
425 <div class="changeset">
426 <a href="/saml/galaxy_semwebtools/changeset/ddc47ed3955c049a79c9407846f856ee" class="changeset-hash">ddc47ed</a>
427 -
428
429 Initial check-in
430
431 </div>
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444 </article>
445
446
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452 <span class="icon create"></span>
453
454
455
456 <a href="/saml"><img alt="Samuel Lampa" src="https://secure.gravatar.com/avatar/87d770f5a0843a130b55572651e9d7d0?d=https%3A%2F%2Fdwz7u9t8u8usb.cloudfront.net%2Fm%2F2219cd120e6a%2Fimg%2Fdefault_avatar%2F32%2Fuser_blue.png&amp;s=32" class="avatar avatar32" /></a>
457
458
459
460 <p>
461
462
463 <a href="/saml">Samuel Lampa</a>
464
465 created
466
467
468 <a href="/saml/galaxy_semwebtools" title="saml/galaxy_semwebtools">saml/galaxy_semwebtools</a>
469
470 </p>
471
472
473 <time datetime="2012-11-21T17:49:18+00:00">4 minutes ago</time>
474
475
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478
479
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624 <a href="/saml" title="Samuel Lampa">
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639
640 <dl class="metadata">
641 <dt>Owner</dt>
642 <dd><a href="/saml">Samuel Lampa</a></dd>
643
644
645
646 <dt>Access Level</dt>
647 <dd>Public</dd>
648
649 <dt>Type</dt>
650 <dd>Mercurial</dd>
651
652
653 <dt>Language</dt>
654 <dd>Python</dd>
655
656
657 <dt>Last Updated</dt>
658 <dd><time datetime="2012-11-21T18:52:02.581101">a minute ago</time></dd>
659
660 <dt>Created</dt>
661 <dd><time datetime="2012-11-21T18:49:18.906678">4 minutes ago</time></dd>
662
663 <dt>Size</dt>
664 <dd>
665 3.9 KB
666 <a rel="nofollow"
667
668 href="/saml/galaxy_semwebtools/get/ddc47ed3955c.zip"
669
670 >(download)</a>
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