annotate tools/tool_dependencies.xml @ 5:4600be69b96f draft

Added databases 1000g2015aug, SPIDEX, avsnp138, avsnp142, exac03

<?xml version="1.0"?>
<tool_dependency>
	<package name="cgatools" version="1.7"> 
        <install version="1.0">
            <actions>                				
                <action type="download_by_url">http://sourceforge.net/projects/cgatools/files/1.7.1/cgatools-1.7.1.5-linux_binary-x86_64.tar.gz</action>
				<action type="shell_command"> chmod a+x bin/cgatools</action>
                <action type="move_file">
                	<source>bin/cgatools</source>
                	<destination>$INSTALL_DIR/bin</destination>
                </action>	    
				<action type="set_environment">
                    <environment_variable name="PATH" action="prepend_to">$INSTALL_DIR/bin</environment_variable>
                    <environment_variable name="PATH" action="prepend_to">$REPOSITORY_INSTALL_DIR</environment_variable>
                </action>            	               			
            </actions>
        </install>
        <readme>
			Downloads and installs the cgatools binary. 
        </readme>
    </package>      
</tool_dependency>