Mercurial > repos > sauria > hifive

changeset 8:0b5a01448cb5 draft

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planemo upload for repository https://github.com/bxlab/galaxy_tools/suites/suite_hifive commit 225579f0fe2a3a5fb846db38eca83020a945beb3
author sauria
date Fri, 13 Jan 2017 13:57:11 -0500
parents 20dfaec1678c
children fb53ebc92f14
files hifive.xml hifive_macros.xml tool_dependencies.xml
diffstat 3 files changed, 16 insertions(+), 4 deletions(-) [+]
line wrap: on
line diff
--- a/hifive.xml	Thu Feb 11 11:08:06 2016 -0500
+++ b/hifive.xml	Fri Jan 13 13:57:11 2017 -0500
@@ -408,4 +408,16 @@
 @HIC_HELP@
 @5C_HELP@
 ]]></help>
+    <citations>
+        <citation type="bibtex">
+            @article{Genome Biology,
+                author = {Sauria MEG, Phillips-Cremins JE, Corces VG and Taylor J}.
+                year = {2015},
+                title = {HiFive: a tool suite for easy and efficient HiC and 5C data analysis},
+                publisher = {BioMed Central},
+                journal = {Genome Biology},
+                url = {https://genomebiology.biomedcentral.com/articles/10.1186/s13059-015-0806-y},
+            }
+        </citation>
+    </citations>
 </tool>
--- a/hifive_macros.xml	Thu Feb 11 11:08:06 2016 -0500
+++ b/hifive_macros.xml	Fri Jan 13 13:57:11 2017 -0500
@@ -2,7 +2,7 @@
 <macros>
     <xml name="requirements">
         <requirements>
-            <requirement type='package' version="1.2">hifive</requirement>
+            <requirement type='package' version="1.3">hifive</requirement>
             <requirement type='package' version='0.12'>scipy</requirement>
             <requirement type='package' version='0.20.1'>cython</requirement>
             <requirement type='package' version='2.5.0'>h5py</requirement>
--- a/tool_dependencies.xml	Thu Feb 11 11:08:06 2016 -0500
+++ b/tool_dependencies.xml	Fri Jan 13 13:57:11 2017 -0500
@@ -7,12 +7,12 @@
         <repository changeset_revision="300877695495" name="package_numpy_1_7" owner="iuc" prior_installation_required="True" toolshed="https://toolshed.g2.bx.psu.edu" />
     </package>
     <package name="cython" version="0.20.1">
-        <repository changeset_revision="c3a8c46fcb97" name="package_cython_0_20_1" owner="iuc" prior_installation_required="True" toolshed="https://toolshed.g2.bx.psu.edu" />
+        <repository changeset_revision="bf766623094e" name="package_cython_0_20_1" owner="iuc" prior_installation_required="True" toolshed="https://toolshed.g2.bx.psu.edu" />
     </package>
     <package name="h5py" version="2.5.0">
         <repository changeset_revision="cc1a2aae5057" name="package_h5py_2_5_0" owner="sauria" toolshed="https://toolshed.g2.bx.psu.edu" />
     </package>
-    <package name="hifive" version="1.2">
-        <repository changeset_revision="621925aadc25" name="package_hifive_1_2" owner="sauria" toolshed="https://toolshed.g2.bx.psu.edu" />
+    <package name="hifive" version="1.3">
+        <repository changeset_revision="a1a962713395" name="package_hifive_1_3" owner="sauria" toolshed="https://toolshed.g2.bx.psu.edu" />
     </package>
 </tool_dependency>