Mercurial > repos > sauria > hifive
changeset 9:fb53ebc92f14 draft
planemo upload for repository https://github.com/bxlab/galaxy_tools/suites/suite_hifive commit 87e9dfebf772b1403f8b09af1e995d354879f761
| author | sauria |
|---|---|
| date | Fri, 13 Jan 2017 15:43:34 -0500 |
| parents | 0b5a01448cb5 |
| children | 4a978cf8cf92 |
| files | hifive_macros.xml test-data/hic.raw test-data/temp.fends test-data/temp.hcd test-data/temp.hcp test-data/temp.txt test-data/test.txt test-data/test_fend.bed test-data/test_frag.bed tool_dependencies.xml |
| diffstat | 10 files changed, 655 insertions(+), 22 deletions(-) [+] |
line wrap: on
line diff
--- a/hifive_macros.xml Fri Jan 13 13:57:11 2017 -0500 +++ b/hifive_macros.xml Fri Jan 13 15:43:34 2017 -0500 @@ -3,10 +3,6 @@ <xml name="requirements"> <requirements> <requirement type='package' version="1.3">hifive</requirement> - <requirement type='package' version='0.12'>scipy</requirement> - <requirement type='package' version='0.20.1'>cython</requirement> - <requirement type='package' version='2.5.0'>h5py</requirement> - <requirement type='package' version='1.7.1'>numpy</requirement> <yield/> </requirements> </xml>
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--- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/test-data/temp.txt Fri Jan 13 15:43:34 2017 -0500 @@ -0,0 +1,1 @@ +chr1 20000 30000 chr1 30000 40000 0.303682
--- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/test-data/test.txt Fri Jan 13 15:43:34 2017 -0500 @@ -0,0 +1,2 @@ +hifive hic-complete express --bed test_fend.bed -R hic.raw -i 600 -f 3 -j 1000 -n 10 -d -P temp +hifive hic-interval -c 1 -s 20000 -e 40000 -b 10000 -d enrichment temp.hcp temp.txt
--- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/test-data/test_fend.bed Fri Jan 13 15:43:34 2017 -0500 @@ -0,0 +1,50 @@ +chr1 16007 16013 HindIII 0 . +chr1 24571 24577 HindIII 0 . +chr1 27981 27987 HindIII 0 . +chr1 30429 30435 HindIII 0 . +chr1 32153 32159 HindIII 0 . +chr1 32774 32780 HindIII 0 . +chr1 37752 37758 HindIII 0 . +chr1 38369 38375 HindIII 0 . +chr1 38791 38797 HindIII 0 . +chr1 39255 39261 HindIII 0 . +chr1 43602 43608 HindIII 0 . +chr1 46455 46461 HindIII 0 . +chr1 52419 52425 HindIII 0 . +chr1 56815 56821 HindIII 0 . +chr1 58747 58753 HindIII 0 . +chr1 58954 58960 HindIII 0 . +chr1 59356 59362 HindIII 0 . +chr1 75365 75371 HindIII 0 . +chr1 83359 83365 HindIII 0 . +chr1 84049 84055 HindIII 0 . +chr1 90742 90748 HindIII 0 . +chr1 91319 91325 HindIII 0 . +chr1 91586 91592 HindIII 0 . +chr1 92457 92463 HindIII 0 . +chr1 97923 97929 HindIII 0 . +chr2 15298 15304 HindIII 0 . +chr2 16049 16055 HindIII 0 . +chr2 18132 18138 HindIII 0 . +chr2 24992 24998 HindIII 0 . +chr2 28070 28076 HindIII 0 . +chr2 28179 28185 HindIII 0 . +chr2 36363 36369 HindIII 0 . +chr2 39160 39166 HindIII 0 . +chr2 39794 39800 HindIII 0 . +chr2 40429 40435 HindIII 0 . +chr2 51587 51593 HindIII 0 . +chr2 51663 51669 HindIII 0 . +chr2 52608 52614 HindIII 0 . +chr2 55288 55294 HindIII 0 . +chr2 57768 57774 HindIII 0 . +chr2 58355 58361 HindIII 0 . +chr2 62941 62947 HindIII 0 . +chr2 63723 63729 HindIII 0 . +chr2 65095 65101 HindIII 0 . +chr2 71813 71819 HindIII 0 . +chr2 74696 74702 HindIII 0 . +chr2 85327 85333 HindIII 0 . +chr2 93076 93082 HindIII 0 . +chr2 95210 95216 HindIII 0 . +chr2 97029 97035 HindIII 0 .
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--- a/tool_dependencies.xml Fri Jan 13 13:57:11 2017 -0500 +++ /dev/null Thu Jan 01 00:00:00 1970 +0000 @@ -1,18 +0,0 @@ -<?xml version="1.0"?> -<tool_dependency> - <package name="scipy" version="0.12.0"> - <repository changeset_revision="cfbbe183f8a7" name="package_scipy_0_12" owner="iuc" toolshed="https://toolshed.g2.bx.psu.edu" /> - </package> - <package name="numpy" version="1.7.1"> - <repository changeset_revision="300877695495" name="package_numpy_1_7" owner="iuc" prior_installation_required="True" toolshed="https://toolshed.g2.bx.psu.edu" /> - </package> - <package name="cython" version="0.20.1"> - <repository changeset_revision="bf766623094e" name="package_cython_0_20_1" owner="iuc" prior_installation_required="True" toolshed="https://toolshed.g2.bx.psu.edu" /> - </package> - <package name="h5py" version="2.5.0"> - <repository changeset_revision="cc1a2aae5057" name="package_h5py_2_5_0" owner="sauria" toolshed="https://toolshed.g2.bx.psu.edu" /> - </package> - <package name="hifive" version="1.3"> - <repository changeset_revision="a1a962713395" name="package_hifive_1_3" owner="sauria" toolshed="https://toolshed.g2.bx.psu.edu" /> - </package> -</tool_dependency>