Mercurial > repos > sauria > package_h5py_2_5_0

changeset 0:cc1a2aae5057 draft default tip

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planemo upload for repository https://github.com/bxlab/galaxy_tools/packages/package_h5py_2_5_0 commit abaefa638db82abe90f335d783c9503dce28944f-dirty
author sauria
date Fri, 05 Jun 2015 14:06:02 -0400
parents
children
files tool_dependencies.xml
diffstat 1 files changed, 43 insertions(+), 0 deletions(-) [+]
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--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/tool_dependencies.xml	Fri Jun 05 14:06:02 2015 -0400
@@ -0,0 +1,43 @@
+<?xml version="1.0"?>
+<tool_dependency>
+    <package name="hdf5" version="1.8.12">
+        <repository changeset_revision="85dfbc5ffda7" name="package_hdf5_1_8_12" owner="iuc" prior_installation_required="True" toolshed="https://toolshed.g2.bx.psu.edu" />
+    </package>
+    <package name="numpy" version="1.7.1">
+        <repository changeset_revision="8b3a5c7061d8" name="package_numpy_1_7" owner="iuc" toolshed="https://toolshed.g2.bx.psu.edu" />
+    </package>
+    <package name="cython" version="0.20.1">
+        <repository changeset_revision="c3a8c46fcb97" name="package_cython_0_20_1" owner="iuc" toolshed="https://toolshed.g2.bx.psu.edu" />
+    </package>
+    <package name="h5py" version="2.5.0">
+        <install version="1.0">
+            <actions>
+                <action type="download_by_url">https://pypi.python.org/packages/source/h/h5py/h5py-2.5.0.tar.gz</action>
+                <action type="set_environment_for_install">
+                    <repository changeset_revision="85dfbc5ffda7" name="package_hdf5_1_8_12" owner="iuc" prior_installation_required="True" toolshed="https://toolshed.g2.bx.psu.edu">
+                        <package name="hdf5" version="1.8.12" />
+                    </repository>
+                    <repository changeset_revision="8b3a5c7061d8" name="package_numpy_1_7" owner="iuc" toolshed="https://toolshed.g2.bx.psu.edu">
+                        <package name="numpy" version="1.7.1" />
+                    </repository>
+                    <repository changeset_revision="c3a8c46fcb97" name="package_cython_0_20_1" owner="iuc" toolshed="https://toolshed.g2.bx.psu.edu">
+                        <package name="cython" version="0.20.1" />
+                    </repository>
+                    <environment_variable action="set_to" name="HDF5_DIR">$HDF5_LIBRARY_PATH</environment_variable>
+                </action>
+                <action type="make_directory">$INSTALL_DIR/lib/python</action>
+                <action type="shell_command">
+                    export PYTHONPATH=$PYTHONPATH:$INSTALL_DIR/lib/python &amp;&amp;
+                    python setup.py install --install-lib $INSTALL_DIR/lib/python
+                </action>
+                <action type="set_environment">
+                    <environment_variable action="prepend_to" name="PYTHONPATH">$INSTALL_DIR/lib/python</environment_variable>
+                    <environment_variable action="set_to" name="PYTHONPATH_H5PY">$INSTALL_DIR/lib/python</environment_variable>
+                </action>
+            </actions>
+        </install>
+        <readme>
+            Compiling h5py requires cython.
+        </readme>
+    </package>
+</tool_dependency>