changeset 6:810ef478fc98 draft

Uploaded

--- a/data_manager_gene_annotation/data_manager/data_manager.py	Tue Apr 26 14:34:42 2016 -0400
+++ b/data_manager_gene_annotation/data_manager/data_manager.py	Thu Apr 28 16:16:31 2016 -0400
@@ -11,7 +11,7 @@
 parser = argparse.ArgumentParser(description='Create data manager json.')
 parser.add_argument('--out', dest='output', action='store', help='JSON filename')
 parser.add_argument('--name', dest='name', action='store', default=str(datetime.date.today()), help='Data table entry unique ID')
-parser.add_argument('--url', dest='url', action='store', help='Download URL', default="http://www.scott-ouellette.com/gene_annotations/chr1-hg19_genes.gtf")
+parser.add_argument('--url', dest='url', action='store', help='Download URL')
 
 args = parser.parse_args()
 
@@ -40,7 +40,7 @@
             else:
                 break
     except Exception as e:
-        print e, "FUCK"
+        print e
     finally:
         if src:
             src.close()
@@ -73,4 +73,4 @@
     file(args.output, 'w').write(json.dumps(data_manager_json))
 
 if __name__ == '__main__':
-    main(args)
+    main(args)
\ No newline at end of file