Mercurial > repos > shellac > sam_consensus_v3
annotate env/lib/python3.9/site-packages/bioblend/_tests/TestGalaxyJobs.py @ 0:4f3585e2f14b draft default tip
"planemo upload commit 60cee0fc7c0cda8592644e1aad72851dec82c959"
author | shellac |
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date | Mon, 22 Mar 2021 18:12:50 +0000 |
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1 from . import ( |
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2 GalaxyTestBase, |
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3 test_util |
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4 ) |
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5 |
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6 |
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7 class TestGalaxyJobs(GalaxyTestBase.GalaxyTestBase): |
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8 @test_util.skip_unless_galaxy('release_21.01') |
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9 @test_util.skip_unless_tool("random_lines1") |
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10 def test_run_and_rerun_random_lines(self): |
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11 history_id = self.gi.histories.create_history(name="test_run_random_lines history")["id"] |
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12 dataset_id = self._test_dataset(history_id, contents="line 1\nline 2\rline 3\r\nline 4") |
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13 tool_inputs = { |
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14 'num_lines': '1', |
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15 'input': { |
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16 'src': 'hda', |
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17 'id': dataset_id |
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18 }, |
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19 'seed_source': { |
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20 'seed_source_selector': 'set_seed', |
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21 'seed': 'asdf' |
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22 } |
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23 } |
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24 |
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25 original_output = self.gi.tools.run_tool( |
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26 history_id=history_id, |
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27 tool_id="random_lines1", |
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28 tool_inputs=tool_inputs, |
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29 input_format='21.01' |
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30 ) |
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31 original_job_id = original_output['jobs'][0]['id'] |
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32 build_for_rerun = self.gi.jobs._build_for_rerun(original_job_id) |
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33 self.assertEqual(build_for_rerun['state_inputs']['seed_source']['seed'], 'asdf') |
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34 |
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35 rerun_output = self.gi.jobs.rerun_job(original_job_id) |
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36 rerun_output_content = self.gi.datasets.download_dataset(rerun_output['outputs'][0]['id']) |
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37 original_output_content = self.gi.datasets.download_dataset(original_output['outputs'][0]['id']) |
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38 self.assertEqual(rerun_output_content, original_output_content) |