Mercurial > repos > shellac > sam_consensus_v3
annotate env/lib/python3.9/site-packages/bioblend/galaxy/datatypes/__init__.py @ 0:4f3585e2f14b draft default tip
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author | shellac |
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date | Mon, 22 Mar 2021 18:12:50 +0000 |
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1 """ |
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2 Contains possible interactions with the Galaxy Datatype |
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3 """ |
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4 from bioblend.galaxy.client import Client |
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5 |
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6 |
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7 class DatatypesClient(Client): |
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8 |
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9 def __init__(self, galaxy_instance): |
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10 self.module = 'datatypes' |
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11 super().__init__(galaxy_instance) |
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12 |
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13 def get_datatypes(self, extension_only=False, upload_only=False): |
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14 """ |
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15 Get the list of all installed datatypes. |
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16 |
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17 :type extension_only: bool |
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18 :param extension_only: Return only the extension rather than the datatype name |
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19 |
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20 :type upload_only: bool |
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21 :param upload_only: Whether to return only datatypes which can be uploaded |
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22 |
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23 :rtype: list |
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24 :return: A list of datatype names. |
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25 For example:: |
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26 |
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27 ['snpmatrix', |
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28 'snptest', |
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29 'tabular', |
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30 'taxonomy', |
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31 'twobit', |
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32 'txt', |
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33 'vcf', |
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34 'wig', |
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35 'xgmml', |
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36 'xml'] |
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37 """ |
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38 |
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39 params = {} |
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40 if extension_only: |
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41 params['extension_only'] = True |
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42 |
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43 if upload_only: |
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44 params['upload_only'] = True |
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45 |
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46 return self._get(params=params) |
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47 |
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48 def get_sniffers(self): |
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49 """ |
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50 Get the list of all installed sniffers. |
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51 |
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52 :rtype: list |
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53 :return: A list of sniffer names. |
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54 For example:: |
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55 |
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56 ['galaxy.datatypes.tabular:Vcf', |
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57 'galaxy.datatypes.binary:TwoBit', |
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58 'galaxy.datatypes.binary:Bam', |
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59 'galaxy.datatypes.binary:Sff', |
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60 'galaxy.datatypes.xml:Phyloxml', |
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61 'galaxy.datatypes.xml:GenericXml', |
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62 'galaxy.datatypes.sequence:Maf', |
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63 'galaxy.datatypes.sequence:Lav', |
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64 'galaxy.datatypes.sequence:csFasta'] |
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65 """ |
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66 url = self._make_url() + '/sniffers' |
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67 return self._get(url=url) |