Mercurial > repos > shellac > sam_consensus_v3
annotate env/lib/python3.9/site-packages/cwltool/provenance_constants.py @ 0:4f3585e2f14b draft default tip
"planemo upload commit 60cee0fc7c0cda8592644e1aad72851dec82c959"
author | shellac |
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date | Mon, 22 Mar 2021 18:12:50 +0000 |
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1 import hashlib |
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2 import os |
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3 import uuid |
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4 |
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5 from prov.identifier import Namespace |
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6 |
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7 __citation__ = "https://doi.org/10.5281/zenodo.1208477" |
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8 |
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9 # NOTE: Semantic versioning of the CWLProv Research Object |
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10 # **and** the cwlprov files |
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11 # |
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12 # Rough guide (major.minor.patch): |
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13 # 1. Bump major number if removing/"breaking" resources or PROV statements |
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14 # 2. Bump minor number if adding resources or PROV statements |
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15 # 3. Bump patch number for non-breaking non-adding changes, |
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16 # e.g. fixing broken relative paths |
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17 CWLPROV_VERSION = "https://w3id.org/cwl/prov/0.6.0" |
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18 |
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19 # Research Object folders |
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20 METADATA = "metadata" |
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21 DATA = "data" |
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22 WORKFLOW = "workflow" |
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23 SNAPSHOT = "snapshot" |
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24 # sub-folders |
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25 MAIN = os.path.join(WORKFLOW, "main") |
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26 PROVENANCE = os.path.join(METADATA, "provenance") |
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27 LOGS = os.path.join(METADATA, "logs") |
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28 WFDESC = Namespace("wfdesc", "http://purl.org/wf4ever/wfdesc#") |
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29 WFPROV = Namespace("wfprov", "http://purl.org/wf4ever/wfprov#") |
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30 WF4EVER = Namespace("wf4ever", "http://purl.org/wf4ever/wf4ever#") |
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31 RO = Namespace("ro", "http://purl.org/wf4ever/ro#") |
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32 ORE = Namespace("ore", "http://www.openarchives.org/ore/terms/") |
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33 FOAF = Namespace("foaf", "http://xmlns.com/foaf/0.1/") |
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34 SCHEMA = Namespace("schema", "http://schema.org/") |
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35 CWLPROV = Namespace("cwlprov", "https://w3id.org/cwl/prov#") |
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36 ORCID = Namespace("orcid", "https://orcid.org/") |
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37 UUID = Namespace("id", "urn:uuid:") |
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38 |
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39 # BagIt and YAML always use UTF-8 |
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40 ENCODING = "UTF-8" |
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41 TEXT_PLAIN = 'text/plain; charset="%s"' % ENCODING |
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42 |
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43 # sha1, compatible with the File type's "checksum" field |
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44 # e.g. "checksum" = "sha1$47a013e660d408619d894b20806b1d5086aab03b" |
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45 # See ./cwltool/schemas/v1.0/Process.yml |
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46 Hasher = hashlib.sha1 |
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47 SHA1 = "sha1" |
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48 SHA256 = "sha256" |
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49 SHA512 = "sha512" |
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50 |
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51 # TODO: Better identifiers for user, at least |
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52 # these should be preserved in ~/.config/cwl for every execution |
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53 # on this host |
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54 USER_UUID = uuid.uuid4().urn |
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55 ACCOUNT_UUID = uuid.uuid4().urn |